Query 041250
Match_columns 259
No_of_seqs 205 out of 2166
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 08:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 1.1E-48 3.8E-53 346.2 20.2 250 2-259 24-324 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 3.2E-42 1.1E-46 306.0 21.2 254 1-259 35-343 (364)
3 3lst_A CALO1 methyltransferase 100.0 9.1E-42 3.1E-46 301.3 20.3 246 1-259 37-326 (348)
4 3gwz_A MMCR; methyltransferase 100.0 2.2E-41 7.4E-46 301.1 19.7 246 1-259 53-346 (369)
5 3i53_A O-methyltransferase; CO 100.0 2.7E-41 9.1E-46 296.3 16.8 244 1-259 20-311 (332)
6 3reo_A (ISO)eugenol O-methyltr 100.0 8E-41 2.7E-45 297.4 19.6 254 1-259 36-345 (368)
7 2ip2_A Probable phenazine-spec 100.0 1.8E-39 6.2E-44 284.7 18.9 244 1-259 23-312 (334)
8 1fp2_A Isoflavone O-methyltran 100.0 3.7E-39 1.3E-43 284.9 18.3 255 1-259 31-331 (352)
9 1zg3_A Isoflavanone 4'-O-methy 100.0 3.9E-39 1.3E-43 285.4 17.0 257 1-259 25-337 (358)
10 3dp7_A SAM-dependent methyltra 100.0 3.8E-39 1.3E-43 286.1 16.8 249 1-259 30-332 (363)
11 3mcz_A O-methyltransferase; ad 100.0 9.8E-39 3.4E-43 282.0 19.3 245 1-259 39-329 (352)
12 1fp1_D Isoliquiritigenin 2'-O- 100.0 3E-38 1E-42 281.1 18.0 254 1-259 39-350 (372)
13 2r3s_A Uncharacterized protein 100.0 3.4E-37 1.1E-41 270.1 18.7 247 1-259 21-313 (335)
14 1x19_A CRTF-related protein; m 100.0 9.3E-37 3.2E-41 270.2 18.8 244 1-259 46-338 (359)
15 1qzz_A RDMB, aclacinomycin-10- 100.0 8.1E-37 2.8E-41 271.7 18.1 247 1-259 31-329 (374)
16 1tw3_A COMT, carminomycin 4-O- 100.0 1.4E-36 4.8E-41 268.9 18.2 247 1-259 34-329 (360)
17 4gek_A TRNA (CMO5U34)-methyltr 99.8 7.4E-19 2.5E-23 148.8 16.1 108 112-222 68-185 (261)
18 3dtn_A Putative methyltransfer 99.8 3.9E-17 1.3E-21 135.2 17.1 152 103-259 34-204 (234)
19 2qe6_A Uncharacterized protein 99.7 2E-16 6.7E-21 134.7 16.2 135 114-257 77-232 (274)
20 3ujc_A Phosphoethanolamine N-m 99.7 2.1E-16 7.3E-21 132.8 14.9 145 102-259 45-196 (266)
21 3bus_A REBM, methyltransferase 99.7 3.6E-16 1.2E-20 132.3 16.0 146 102-259 51-206 (273)
22 1vl5_A Unknown conserved prote 99.7 2.3E-16 8E-21 132.7 13.6 146 99-259 24-180 (260)
23 2o57_A Putative sarcosine dime 99.7 7.2E-16 2.4E-20 132.2 16.0 143 102-259 68-224 (297)
24 3ou2_A SAM-dependent methyltra 99.7 6.8E-16 2.3E-20 125.9 15.1 112 102-219 35-150 (218)
25 1nkv_A Hypothetical protein YJ 99.7 6.8E-16 2.3E-20 129.3 15.1 144 101-259 25-177 (256)
26 3hnr_A Probable methyltransfer 99.7 4.7E-16 1.6E-20 127.4 13.8 148 102-259 35-191 (220)
27 1kpg_A CFA synthase;, cyclopro 99.7 1.3E-15 4.4E-20 130.0 14.8 152 102-259 54-218 (287)
28 3mgg_A Methyltransferase; NYSG 99.7 6.8E-16 2.3E-20 130.9 12.6 143 112-259 35-188 (276)
29 1xxl_A YCGJ protein; structura 99.7 1.7E-15 5.7E-20 126.1 14.3 144 101-259 10-164 (239)
30 3dh0_A SAM dependent methyltra 99.7 1.7E-15 5.8E-20 123.9 13.6 136 101-259 26-171 (219)
31 3jwg_A HEN1, methyltransferase 99.7 1.3E-15 4.4E-20 124.8 12.8 109 102-215 19-141 (219)
32 3dlc_A Putative S-adenosyl-L-m 99.6 1.7E-16 5.9E-21 129.3 7.4 148 102-259 34-193 (219)
33 1xtp_A LMAJ004091AAA; SGPP, st 99.6 1.1E-15 3.9E-20 127.7 12.1 139 102-259 83-228 (254)
34 3pfg_A N-methyltransferase; N, 99.6 1.8E-15 6.1E-20 127.5 12.8 131 84-219 17-155 (263)
35 3jwh_A HEN1; methyltransferase 99.6 1E-15 3.5E-20 125.3 10.9 109 103-216 20-142 (217)
36 3f4k_A Putative methyltransfer 99.6 4E-15 1.4E-19 124.6 14.7 141 103-259 36-186 (257)
37 3h2b_A SAM-dependent methyltra 99.6 6.8E-16 2.3E-20 124.9 9.5 127 115-259 42-172 (203)
38 3vc1_A Geranyl diphosphate 2-C 99.6 9.3E-15 3.2E-19 126.4 17.2 144 102-259 106-259 (312)
39 3hem_A Cyclopropane-fatty-acyl 99.6 2.3E-15 8E-20 129.5 13.3 151 102-258 62-232 (302)
40 3lcc_A Putative methyl chlorid 99.6 1.3E-15 4.4E-20 126.2 10.7 102 115-221 67-177 (235)
41 3l8d_A Methyltransferase; stru 99.6 5E-15 1.7E-19 122.9 14.1 134 112-259 51-190 (242)
42 1pjz_A Thiopurine S-methyltran 99.6 2.5E-15 8.6E-20 122.2 12.0 100 112-216 20-141 (203)
43 2fk8_A Methoxy mycolic acid sy 99.6 8.3E-15 2.8E-19 126.8 16.0 152 102-259 80-244 (318)
44 2qm3_A Predicted methyltransfe 99.6 1.8E-16 6.1E-21 140.7 5.1 196 10-218 47-280 (373)
45 4fsd_A Arsenic methyltransfera 99.6 5.3E-15 1.8E-19 131.6 14.3 136 113-259 82-241 (383)
46 2p35_A Trans-aconitate 2-methy 99.6 2.7E-15 9.4E-20 125.7 11.6 108 102-216 23-133 (259)
47 2xvm_A Tellurite resistance pr 99.6 6.4E-15 2.2E-19 118.4 13.4 113 102-221 22-142 (199)
48 3dli_A Methyltransferase; PSI- 99.6 6.6E-15 2.2E-19 122.4 13.4 130 112-259 39-174 (240)
49 3gu3_A Methyltransferase; alph 99.6 4E-15 1.4E-19 127.0 12.3 101 112-217 20-128 (284)
50 3bxo_A N,N-dimethyltransferase 99.6 6.6E-15 2.2E-19 121.8 13.0 103 113-220 39-146 (239)
51 3kkz_A Uncharacterized protein 99.6 5.2E-15 1.8E-19 124.9 12.6 133 112-259 44-186 (267)
52 3ocj_A Putative exported prote 99.6 2.2E-15 7.4E-20 130.0 9.9 106 112-220 116-232 (305)
53 2ex4_A Adrenal gland protein A 99.6 2.9E-15 1E-19 124.6 10.0 128 114-259 79-215 (241)
54 3sm3_A SAM-dependent methyltra 99.6 1.4E-14 4.9E-19 119.3 14.0 140 112-259 28-197 (235)
55 1ve3_A Hypothetical protein PH 99.6 6.6E-15 2.2E-19 120.9 10.8 101 113-218 37-145 (227)
56 3g5l_A Putative S-adenosylmeth 99.6 2.2E-14 7.5E-19 120.0 12.9 106 103-216 35-146 (253)
57 3ccf_A Cyclopropane-fatty-acyl 99.6 1.4E-14 4.8E-19 123.1 11.7 107 101-216 46-155 (279)
58 3i9f_A Putative type 11 methyl 99.6 5.6E-15 1.9E-19 116.2 8.5 110 104-224 9-121 (170)
59 2p7i_A Hypothetical protein; p 99.6 2.6E-14 8.8E-19 118.6 12.9 135 113-259 41-189 (250)
60 3g2m_A PCZA361.24; SAM-depende 99.6 1.2E-14 4.1E-19 124.9 10.7 111 101-219 72-194 (299)
61 4hg2_A Methyltransferase type 99.6 1.4E-14 4.7E-19 122.2 10.8 98 113-219 38-139 (257)
62 3e23_A Uncharacterized protein 99.6 1.4E-14 4.7E-19 118.0 10.5 128 112-259 41-171 (211)
63 2gb4_A Thiopurine S-methyltran 99.6 4.4E-14 1.5E-18 118.8 13.0 101 113-218 67-194 (252)
64 3ggd_A SAM-dependent methyltra 99.6 1.2E-14 4.1E-19 121.0 9.5 103 112-219 54-167 (245)
65 2p8j_A S-adenosylmethionine-de 99.5 1.4E-14 4.6E-19 117.6 9.0 143 112-258 21-172 (209)
66 4htf_A S-adenosylmethionine-de 99.5 1.7E-14 5.8E-19 122.9 9.7 136 114-259 68-222 (285)
67 3ege_A Putative methyltransfer 99.5 7.2E-14 2.5E-18 117.7 13.4 107 102-219 24-134 (261)
68 3bkx_A SAM-dependent methyltra 99.5 9.5E-14 3.3E-18 117.4 14.2 150 102-259 33-209 (275)
69 3g5t_A Trans-aconitate 3-methy 99.5 8.2E-14 2.8E-18 119.6 13.5 101 113-219 35-153 (299)
70 2yqz_A Hypothetical protein TT 99.5 1.1E-13 3.8E-18 116.0 13.4 96 112-214 37-140 (263)
71 3bkw_A MLL3908 protein, S-aden 99.5 8.8E-14 3E-18 115.3 12.0 126 83-216 10-145 (243)
72 3m70_A Tellurite resistance pr 99.5 9.9E-14 3.4E-18 118.2 12.3 113 102-221 110-229 (286)
73 3g07_A 7SK snRNA methylphospha 99.5 3.7E-14 1.3E-18 121.6 9.6 100 113-215 45-220 (292)
74 3cgg_A SAM-dependent methyltra 99.5 3.8E-13 1.3E-17 107.2 14.9 99 113-216 45-148 (195)
75 3ofk_A Nodulation protein S; N 99.5 1E-13 3.5E-18 113.1 10.2 101 112-217 49-156 (216)
76 3e8s_A Putative SAM dependent 99.5 6.1E-14 2.1E-18 114.7 8.5 143 103-259 43-199 (227)
77 3uwp_A Histone-lysine N-methyl 99.5 7.6E-14 2.6E-18 123.6 9.0 114 102-223 163-296 (438)
78 2gs9_A Hypothetical protein TT 99.5 1.8E-13 6.1E-18 111.3 10.4 127 114-257 36-170 (211)
79 3e05_A Precorrin-6Y C5,15-meth 99.5 6E-13 2E-17 107.7 13.0 106 102-217 30-144 (204)
80 3giw_A Protein of unknown func 99.5 4E-13 1.4E-17 113.4 12.2 137 113-257 77-237 (277)
81 3cc8_A Putative methyltransfer 99.5 3.6E-13 1.2E-17 110.3 11.7 154 88-259 9-175 (230)
82 3thr_A Glycine N-methyltransfe 99.5 8.5E-14 2.9E-18 118.9 8.2 108 102-216 47-176 (293)
83 2aot_A HMT, histamine N-methyl 99.5 3.2E-13 1.1E-17 115.6 11.4 133 114-259 52-211 (292)
84 2pxx_A Uncharacterized protein 99.5 2.6E-13 8.7E-18 110.2 10.2 111 104-218 32-162 (215)
85 1af7_A Chemotaxis receptor met 99.5 1.8E-13 6.1E-18 116.2 9.0 97 114-213 105-250 (274)
86 3htx_A HEN1; HEN1, small RNA m 99.5 3.6E-13 1.2E-17 127.7 11.9 101 112-216 719-835 (950)
87 3hm2_A Precorrin-6Y C5,15-meth 99.4 3.7E-13 1.3E-17 106.1 9.4 104 103-218 16-130 (178)
88 3iv6_A Putative Zn-dependent a 99.4 8.4E-13 2.9E-17 111.2 11.4 108 101-216 34-149 (261)
89 1wzn_A SAM-dependent methyltra 99.4 1.1E-12 3.9E-17 109.3 12.0 98 112-214 39-144 (252)
90 1y8c_A S-adenosylmethionine-de 99.4 6.9E-13 2.4E-17 109.8 10.3 95 114-213 37-140 (246)
91 1vlm_A SAM-dependent methyltra 99.4 1.2E-12 4.3E-17 107.1 11.6 125 115-259 48-178 (219)
92 4dcm_A Ribosomal RNA large sub 99.4 1.4E-12 4.7E-17 115.7 11.2 108 103-215 213-334 (375)
93 3d2l_A SAM-dependent methyltra 99.4 1.2E-12 4.1E-17 108.3 10.2 95 113-213 32-135 (243)
94 2pjd_A Ribosomal RNA small sub 99.4 5.5E-13 1.9E-17 116.9 8.4 110 102-216 186-304 (343)
95 1ri5_A MRNA capping enzyme; me 99.4 1.5E-12 5.1E-17 111.0 10.9 102 112-217 62-176 (298)
96 1dus_A MJ0882; hypothetical pr 99.4 3.5E-12 1.2E-16 101.5 12.0 108 102-217 42-159 (194)
97 3fpf_A Mtnas, putative unchara 99.4 1.9E-12 6.7E-17 110.4 10.2 97 112-216 120-223 (298)
98 3mti_A RRNA methylase; SAM-dep 99.4 4E-12 1.4E-16 101.1 10.8 104 112-220 20-140 (185)
99 3bgv_A MRNA CAP guanine-N7 met 99.4 6E-12 2E-16 108.7 12.6 111 102-216 22-156 (313)
100 2kw5_A SLR1183 protein; struct 99.4 4.2E-12 1.5E-16 102.3 10.6 95 117-218 32-134 (202)
101 3fzg_A 16S rRNA methylase; met 99.3 1.8E-12 6E-17 103.3 6.7 97 112-215 47-152 (200)
102 1yzh_A TRNA (guanine-N(7)-)-me 99.3 1.1E-11 3.7E-16 101.2 11.6 98 114-215 41-156 (214)
103 2zfu_A Nucleomethylin, cerebra 99.3 7.5E-12 2.6E-16 101.9 10.5 94 103-217 57-153 (215)
104 3b3j_A Histone-arginine methyl 99.3 3.9E-12 1.3E-16 116.2 9.7 106 102-213 148-261 (480)
105 3orh_A Guanidinoacetate N-meth 99.3 1E-12 3.6E-17 109.1 5.2 98 113-216 59-171 (236)
106 2vdw_A Vaccinia virus capping 99.3 4.4E-12 1.5E-16 109.3 9.2 99 114-216 48-170 (302)
107 3q87_B N6 adenine specific DNA 99.3 6.7E-12 2.3E-16 99.0 9.5 95 113-218 22-126 (170)
108 3eey_A Putative rRNA methylase 99.3 7.2E-12 2.5E-16 100.6 9.8 106 112-220 20-144 (197)
109 3mq2_A 16S rRNA methyltransfer 99.3 3.8E-12 1.3E-16 104.0 8.2 106 103-215 18-140 (218)
110 3njr_A Precorrin-6Y methylase; 99.3 1.5E-11 5E-16 99.9 11.7 99 104-216 47-155 (204)
111 3mb5_A SAM-dependent methyltra 99.3 3.8E-12 1.3E-16 106.5 8.4 104 102-217 83-196 (255)
112 2fca_A TRNA (guanine-N(7)-)-me 99.3 8.5E-12 2.9E-16 102.0 10.2 98 114-215 38-153 (213)
113 1u2z_A Histone-lysine N-methyl 99.3 1E-11 3.6E-16 111.5 11.6 110 104-221 234-365 (433)
114 2y1w_A Histone-arginine methyl 99.3 5E-12 1.7E-16 111.0 9.0 107 102-214 40-154 (348)
115 2avn_A Ubiquinone/menaquinone 99.3 6E-12 2.1E-16 105.7 9.1 98 113-217 53-154 (260)
116 1zx0_A Guanidinoacetate N-meth 99.3 2.1E-12 7.3E-17 107.0 6.2 101 113-217 59-172 (236)
117 1yb2_A Hypothetical protein TA 99.3 9.3E-12 3.2E-16 105.6 10.2 104 102-217 100-213 (275)
118 3grz_A L11 mtase, ribosomal pr 99.3 5.6E-12 1.9E-16 102.0 8.5 99 112-219 58-163 (205)
119 1fbn_A MJ fibrillarin homologu 99.3 1.5E-11 5E-16 101.6 11.0 95 112-214 72-177 (230)
120 4e2x_A TCAB9; kijanose, tetron 99.3 9.9E-12 3.4E-16 111.5 10.8 139 101-259 96-243 (416)
121 3dxy_A TRNA (guanine-N(7)-)-me 99.3 4.2E-12 1.4E-16 104.3 7.5 98 114-215 34-150 (218)
122 4dzr_A Protein-(glutamine-N5) 99.3 7.7E-13 2.6E-17 107.2 3.0 101 113-216 29-165 (215)
123 2b3t_A Protein methyltransfera 99.3 1.8E-11 6E-16 103.9 11.6 98 114-214 109-237 (276)
124 3p2e_A 16S rRNA methylase; met 99.3 5.6E-12 1.9E-16 104.0 8.2 101 113-216 23-140 (225)
125 1nt2_A Fibrillarin-like PRE-rR 99.3 1.7E-11 5.9E-16 100.0 11.0 96 112-215 55-161 (210)
126 3lbf_A Protein-L-isoaspartate 99.3 2.1E-11 7.3E-16 98.8 10.8 99 103-216 68-175 (210)
127 1o9g_A RRNA methyltransferase; 99.3 9.3E-12 3.2E-16 104.0 8.6 100 114-216 51-215 (250)
128 1jsx_A Glucose-inhibited divis 99.3 1E-11 3.5E-16 100.4 8.5 92 115-215 66-165 (207)
129 3p9n_A Possible methyltransfer 99.3 3.9E-11 1.3E-15 95.9 11.7 100 113-217 43-155 (189)
130 2yxe_A Protein-L-isoaspartate 99.3 2.5E-11 8.6E-16 98.8 10.5 100 104-216 69-178 (215)
131 3ntv_A MW1564 protein; rossman 99.3 9.4E-12 3.2E-16 103.0 8.0 100 112-219 69-180 (232)
132 3tfw_A Putative O-methyltransf 99.3 1E-11 3.6E-16 103.8 8.4 100 112-219 61-174 (248)
133 2bm8_A Cephalosporin hydroxyla 99.3 2.2E-11 7.6E-16 101.1 9.7 95 114-216 81-188 (236)
134 2i62_A Nicotinamide N-methyltr 99.2 2.9E-12 9.9E-17 107.4 4.0 100 113-216 55-199 (265)
135 2ozv_A Hypothetical protein AT 99.2 2.5E-11 8.5E-16 102.3 9.7 101 112-215 34-170 (260)
136 1xdz_A Methyltransferase GIDB; 99.2 9.1E-12 3.1E-16 103.5 6.8 94 113-215 69-174 (240)
137 3kr9_A SAM-dependent methyltra 99.2 2.5E-11 8.6E-16 99.8 9.2 96 112-214 13-118 (225)
138 3q7e_A Protein arginine N-meth 99.2 1.7E-11 5.7E-16 107.7 8.7 97 112-212 64-170 (349)
139 3duw_A OMT, O-methyltransferas 99.2 1.9E-11 6.6E-16 100.1 8.5 100 112-219 56-171 (223)
140 1nv8_A HEMK protein; class I a 99.2 4.1E-11 1.4E-15 102.3 10.6 95 114-213 123-247 (284)
141 3g89_A Ribosomal RNA small sub 99.2 1.3E-11 4.6E-16 103.3 7.3 95 113-216 79-185 (249)
142 2yxd_A Probable cobalt-precorr 99.2 2.9E-11 9.9E-16 95.3 8.8 100 102-216 25-132 (183)
143 3gjy_A Spermidine synthase; AP 99.2 2.2E-11 7.5E-16 105.0 8.7 99 115-216 90-201 (317)
144 1jg1_A PIMT;, protein-L-isoasp 99.2 3.5E-11 1.2E-15 99.5 9.6 100 103-216 82-190 (235)
145 2gpy_A O-methyltransferase; st 99.2 3.3E-11 1.1E-15 99.5 9.5 98 112-217 52-162 (233)
146 1l3i_A Precorrin-6Y methyltran 99.2 3.3E-11 1.1E-15 95.6 9.0 103 103-217 24-136 (192)
147 3u81_A Catechol O-methyltransf 99.2 1.1E-11 3.7E-16 101.7 6.3 102 112-219 56-174 (221)
148 3evz_A Methyltransferase; NYSG 99.2 3.9E-11 1.3E-15 98.6 9.6 101 112-216 53-180 (230)
149 3ckk_A TRNA (guanine-N(7)-)-me 99.2 3.1E-11 1.1E-15 100.2 9.0 99 113-215 45-168 (235)
150 2fyt_A Protein arginine N-meth 99.2 7.4E-11 2.5E-15 103.2 11.8 105 102-212 54-168 (340)
151 3tr6_A O-methyltransferase; ce 99.2 2.3E-11 7.8E-16 99.7 8.0 101 112-220 62-179 (225)
152 2g72_A Phenylethanolamine N-me 99.2 6.8E-12 2.3E-16 107.0 5.0 129 114-259 71-246 (289)
153 3dmg_A Probable ribosomal RNA 99.2 5.5E-11 1.9E-15 105.6 11.0 97 114-215 233-340 (381)
154 1vbf_A 231AA long hypothetical 99.2 6.8E-11 2.3E-15 97.3 10.8 99 103-216 61-166 (231)
155 2ipx_A RRNA 2'-O-methyltransfe 99.2 3.4E-11 1.1E-15 99.5 8.7 95 112-213 75-180 (233)
156 3lpm_A Putative methyltransfer 99.2 5.8E-11 2E-15 99.8 10.1 99 112-214 46-175 (259)
157 3r0q_C Probable protein argini 99.2 3.2E-11 1.1E-15 107.0 8.8 102 112-217 61-171 (376)
158 1ej0_A FTSJ; methyltransferase 99.2 9.4E-11 3.2E-15 91.6 10.6 105 104-217 13-138 (180)
159 2h00_A Methyltransferase 10 do 99.2 2.1E-12 7.2E-17 108.1 0.9 101 114-217 65-194 (254)
160 2plw_A Ribosomal RNA methyltra 99.2 1.3E-10 4.3E-15 93.5 11.3 103 104-215 13-154 (201)
161 2a14_A Indolethylamine N-methy 99.2 1.3E-11 4.3E-16 104.1 5.4 100 113-217 54-199 (263)
162 2pwy_A TRNA (adenine-N(1)-)-me 99.2 6.9E-11 2.3E-15 98.7 9.6 104 102-217 86-200 (258)
163 1dl5_A Protein-L-isoaspartate 99.2 9.1E-11 3.1E-15 101.6 10.6 101 103-216 66-176 (317)
164 1p91_A Ribosomal RNA large sub 99.2 5.2E-11 1.8E-15 100.3 8.8 94 113-218 84-181 (269)
165 3adn_A Spermidine synthase; am 99.2 5E-11 1.7E-15 102.2 8.7 100 113-215 82-198 (294)
166 3r3h_A O-methyltransferase, SA 99.2 2.1E-11 7.3E-16 101.6 6.2 101 112-220 58-175 (242)
167 2vdv_E TRNA (guanine-N(7)-)-me 99.2 3.4E-11 1.2E-15 100.5 7.4 94 113-214 48-172 (246)
168 1g8a_A Fibrillarin-like PRE-rR 99.2 1.3E-10 4.6E-15 95.4 10.9 96 112-214 71-177 (227)
169 4df3_A Fibrillarin-like rRNA/T 99.2 9.7E-11 3.3E-15 96.8 9.7 101 112-219 75-186 (233)
170 3bwc_A Spermidine synthase; SA 99.2 3.8E-11 1.3E-15 103.5 7.5 100 113-215 94-210 (304)
171 1ws6_A Methyltransferase; stru 99.2 3.3E-11 1.1E-15 94.2 6.5 96 114-216 41-148 (171)
172 1g6q_1 HnRNP arginine N-methyl 99.2 7.2E-11 2.5E-15 102.8 9.2 98 112-213 36-143 (328)
173 2fhp_A Methylase, putative; al 99.2 8.1E-11 2.8E-15 93.3 8.4 97 113-216 43-155 (187)
174 3lec_A NADB-rossmann superfami 99.2 1.1E-10 3.6E-15 96.3 9.0 97 112-215 19-125 (230)
175 1o54_A SAM-dependent O-methylt 99.2 1.3E-10 4.5E-15 98.5 9.8 104 102-217 102-215 (277)
176 2nxc_A L11 mtase, ribosomal pr 99.2 7.8E-11 2.7E-15 98.9 8.3 97 112-218 118-221 (254)
177 3dr5_A Putative O-methyltransf 99.1 1.5E-10 5.2E-15 95.1 9.5 96 116-219 58-167 (221)
178 3c3p_A Methyltransferase; NP_9 99.1 4.9E-11 1.7E-15 96.9 6.4 98 113-218 55-163 (210)
179 3m33_A Uncharacterized protein 99.1 2.6E-11 8.7E-16 99.8 4.4 87 113-212 47-139 (226)
180 2frn_A Hypothetical protein PH 99.1 1.1E-10 3.9E-15 99.1 8.5 96 113-218 124-228 (278)
181 2esr_A Methyltransferase; stru 99.1 5E-11 1.7E-15 94.0 5.7 98 113-217 30-140 (177)
182 3gnl_A Uncharacterized protein 99.1 1.6E-10 5.4E-15 96.0 8.9 97 112-215 19-125 (244)
183 1sui_A Caffeoyl-COA O-methyltr 99.1 1.6E-10 5.6E-15 96.5 8.9 100 112-219 77-194 (247)
184 3tma_A Methyltransferase; thum 99.1 2.3E-10 7.7E-15 100.6 10.2 110 102-216 193-318 (354)
185 2hnk_A SAM-dependent O-methylt 99.1 9.3E-11 3.2E-15 97.2 7.2 100 112-219 58-185 (239)
186 2avd_A Catechol-O-methyltransf 99.1 1.3E-10 4.5E-15 95.4 8.0 100 112-219 67-183 (229)
187 2ld4_A Anamorsin; methyltransf 99.1 1.3E-10 4.4E-15 91.7 7.5 86 112-218 10-104 (176)
188 2ift_A Putative methylase HI07 99.1 8.8E-11 3E-15 95.0 6.6 97 114-217 53-165 (201)
189 1i9g_A Hypothetical protein RV 99.1 3E-10 1E-14 96.1 9.9 104 102-217 89-205 (280)
190 3lcv_B Sisomicin-gentamicin re 99.1 4.6E-11 1.6E-15 99.5 4.6 101 112-216 130-237 (281)
191 2pbf_A Protein-L-isoaspartate 99.1 5E-10 1.7E-14 91.8 10.5 94 112-216 78-194 (227)
192 3c3y_A Pfomt, O-methyltransfer 99.1 3.2E-10 1.1E-14 94.1 9.0 98 112-217 68-183 (237)
193 2yvl_A TRMI protein, hypotheti 99.1 7.4E-10 2.5E-14 91.8 10.8 101 103-217 82-192 (248)
194 1iy9_A Spermidine synthase; ro 99.1 1.3E-10 4.4E-15 98.7 6.1 99 113-214 74-188 (275)
195 2fpo_A Methylase YHHF; structu 99.1 3.4E-10 1.2E-14 91.6 8.4 97 114-217 54-162 (202)
196 3dou_A Ribosomal RNA large sub 99.1 5.6E-10 1.9E-14 89.7 9.2 104 102-216 14-140 (191)
197 3frh_A 16S rRNA methylase; met 99.1 3.4E-10 1.2E-14 93.4 8.0 96 113-216 104-206 (253)
198 1r18_A Protein-L-isoaspartate( 99.1 3.2E-10 1.1E-14 93.2 7.9 93 112-215 82-194 (227)
199 2i7c_A Spermidine synthase; tr 99.1 2.3E-10 7.7E-15 97.6 7.2 100 113-215 77-192 (283)
200 2b2c_A Spermidine synthase; be 99.1 2.2E-10 7.6E-15 99.1 7.1 100 113-215 107-222 (314)
201 3a27_A TYW2, uncharacterized p 99.1 3E-10 1E-14 96.2 7.8 101 112-221 117-225 (272)
202 1ixk_A Methyltransferase; open 99.1 7.4E-10 2.5E-14 95.8 10.3 109 105-218 111-249 (315)
203 3cbg_A O-methyltransferase; cy 99.1 2E-10 6.9E-15 94.9 6.5 100 112-219 70-186 (232)
204 2pt6_A Spermidine synthase; tr 99.0 2.5E-10 8.6E-15 99.1 7.1 99 113-214 115-229 (321)
205 1i1n_A Protein-L-isoaspartate 99.0 7.7E-10 2.6E-14 90.6 9.7 94 112-216 75-183 (226)
206 1uir_A Polyamine aminopropyltr 99.0 2.3E-10 7.8E-15 99.0 6.7 101 113-216 76-196 (314)
207 2oxt_A Nucleoside-2'-O-methylt 99.0 6E-10 2E-14 94.1 9.1 98 112-216 72-186 (265)
208 1mjf_A Spermidine synthase; sp 99.0 2.4E-10 8.2E-15 97.3 6.7 99 113-215 74-193 (281)
209 2o07_A Spermidine synthase; st 99.0 1.8E-10 6.1E-15 99.2 5.8 100 113-215 94-209 (304)
210 3bzb_A Uncharacterized protein 99.0 1.4E-09 4.7E-14 92.6 11.1 99 112-214 77-204 (281)
211 2wa2_A Non-structural protein 99.0 5.4E-10 1.8E-14 94.9 8.5 98 112-216 80-194 (276)
212 3sso_A Methyltransferase; macr 99.0 3.6E-10 1.2E-14 99.9 7.6 95 113-217 215-326 (419)
213 2nyu_A Putative ribosomal RNA 99.0 1.2E-09 4.1E-14 87.3 10.0 104 104-216 13-146 (196)
214 1xj5_A Spermidine synthase 1; 99.0 3.4E-10 1.2E-14 98.7 7.0 99 113-214 119-234 (334)
215 1zq9_A Probable dimethyladenos 99.0 3.6E-10 1.2E-14 96.4 6.7 103 101-211 17-143 (285)
216 1inl_A Spermidine synthase; be 99.0 3.8E-10 1.3E-14 96.8 6.7 99 113-214 89-204 (296)
217 3id6_C Fibrillarin-like rRNA/T 99.0 1.3E-09 4.5E-14 90.1 9.6 96 112-215 74-181 (232)
218 2b25_A Hypothetical protein; s 99.0 1E-09 3.5E-14 95.6 9.2 103 102-216 95-220 (336)
219 1ne2_A Hypothetical protein TA 99.0 9.9E-10 3.4E-14 88.3 8.5 89 113-202 50-139 (200)
220 3gdh_A Trimethylguanosine synt 99.0 2.3E-11 8E-16 100.8 -1.9 93 114-213 78-179 (241)
221 4hc4_A Protein arginine N-meth 99.0 1.1E-09 3.9E-14 96.6 8.8 94 115-212 84-186 (376)
222 3ajd_A Putative methyltransfer 99.0 1.3E-09 4.4E-14 92.4 8.8 105 112-219 81-215 (274)
223 4azs_A Methyltransferase WBDD; 99.0 4.1E-10 1.4E-14 105.0 6.0 105 112-221 64-179 (569)
224 3hp7_A Hemolysin, putative; st 99.0 1.2E-09 4.1E-14 93.1 8.3 101 103-214 75-184 (291)
225 2p41_A Type II methyltransfera 99.0 9.6E-10 3.3E-14 94.7 7.3 96 112-213 80-189 (305)
226 2cmg_A Spermidine synthase; tr 98.9 2.7E-09 9.2E-14 89.9 8.9 90 113-214 71-170 (262)
227 2yxl_A PH0851 protein, 450AA l 98.9 6.7E-09 2.3E-13 94.1 11.5 106 112-220 257-394 (450)
228 3opn_A Putative hemolysin; str 98.9 4.4E-09 1.5E-13 87.0 8.6 100 102-214 26-136 (232)
229 2ih2_A Modification methylase 98.9 8.6E-09 3E-13 92.2 10.6 107 101-216 28-165 (421)
230 2f8l_A Hypothetical protein LM 98.9 4.3E-09 1.5E-13 92.1 7.6 100 114-216 130-257 (344)
231 1wy7_A Hypothetical protein PH 98.8 2.7E-08 9.4E-13 80.1 11.0 89 113-202 48-141 (207)
232 1qam_A ERMC' methyltransferase 98.8 1.1E-08 3.7E-13 85.2 8.7 83 101-187 19-107 (244)
233 2igt_A SAM dependent methyltra 98.8 1.1E-08 3.6E-13 89.2 8.8 99 114-217 153-274 (332)
234 2h1r_A Dimethyladenosine trans 98.8 7.8E-09 2.7E-13 88.7 7.6 90 101-195 31-127 (299)
235 1sqg_A SUN protein, FMU protei 98.8 2.8E-08 9.6E-13 89.4 11.3 105 112-219 244-378 (429)
236 3m6w_A RRNA methylase; rRNA me 98.8 9.5E-09 3.3E-13 93.1 7.6 103 112-218 99-232 (464)
237 3tm4_A TRNA (guanine N2-)-meth 98.8 9E-09 3.1E-13 91.1 7.2 92 112-204 215-322 (373)
238 2frx_A Hypothetical protein YE 98.8 3.9E-08 1.3E-12 89.7 11.5 103 114-219 117-250 (479)
239 1yub_A Ermam, rRNA methyltrans 98.7 3.4E-09 1.2E-13 88.2 3.0 105 101-214 18-144 (245)
240 3k0b_A Predicted N6-adenine-sp 98.7 3.3E-08 1.1E-12 87.9 9.5 113 101-216 190-351 (393)
241 3k6r_A Putative transferase PH 98.7 1.6E-08 5.5E-13 85.7 7.0 100 112-221 123-231 (278)
242 2yx1_A Hypothetical protein MJ 98.7 2.5E-08 8.5E-13 87.0 8.3 95 113-219 194-295 (336)
243 3ldg_A Putative uncharacterize 98.7 1E-07 3.6E-12 84.5 12.1 113 101-216 183-344 (384)
244 2as0_A Hypothetical protein PH 98.7 2.8E-08 9.7E-13 88.5 7.7 100 114-217 217-337 (396)
245 3gru_A Dimethyladenosine trans 98.7 6.3E-08 2.2E-12 82.8 8.8 78 101-182 39-123 (295)
246 1wxx_A TT1595, hypothetical pr 98.7 3.5E-08 1.2E-12 87.5 7.4 99 114-217 209-327 (382)
247 3ldu_A Putative methylase; str 98.7 7.8E-08 2.7E-12 85.3 9.6 113 101-216 184-345 (385)
248 3m4x_A NOL1/NOP2/SUN family pr 98.6 4.4E-08 1.5E-12 88.6 6.7 110 104-218 97-237 (456)
249 2b78_A Hypothetical protein SM 98.6 5.6E-08 1.9E-12 86.3 7.1 100 113-216 211-332 (385)
250 3c0k_A UPF0064 protein YCCW; P 98.6 6.9E-08 2.3E-12 86.0 7.5 100 113-216 219-340 (396)
251 2xyq_A Putative 2'-O-methyl tr 98.6 1.4E-07 4.9E-12 80.4 8.8 94 112-217 61-173 (290)
252 1m6y_A S-adenosyl-methyltransf 98.6 9.7E-08 3.3E-12 81.9 7.7 78 101-180 15-105 (301)
253 2okc_A Type I restriction enzy 98.6 6.7E-08 2.3E-12 87.4 6.8 109 103-216 162-308 (445)
254 4dmg_A Putative uncharacterize 98.6 1.4E-07 4.6E-12 84.0 8.1 101 114-219 214-330 (393)
255 3ftd_A Dimethyladenosine trans 98.6 1.8E-07 6E-12 78.2 8.2 86 101-189 20-110 (249)
256 3fut_A Dimethyladenosine trans 98.5 2.5E-07 8.5E-12 78.2 8.9 90 102-197 37-133 (271)
257 2qfm_A Spermine synthase; sper 98.5 1.5E-07 5.2E-12 82.2 6.9 99 113-215 187-314 (364)
258 1uwv_A 23S rRNA (uracil-5-)-me 98.5 4.5E-07 1.5E-11 81.7 10.1 91 112-213 284-387 (433)
259 1qyr_A KSGA, high level kasuga 98.5 1.8E-07 6.2E-12 78.2 5.7 91 101-195 10-111 (252)
260 3uzu_A Ribosomal RNA small sub 98.4 1E-07 3.5E-12 80.9 3.8 69 102-172 32-105 (279)
261 2jjq_A Uncharacterized RNA met 98.4 8.6E-07 2.9E-11 79.6 10.0 91 113-214 289-386 (425)
262 3v97_A Ribosomal RNA large sub 98.4 6.5E-07 2.2E-11 85.3 9.6 99 114-216 539-658 (703)
263 3tqs_A Ribosomal RNA small sub 98.4 2.8E-07 9.6E-12 77.2 6.2 68 101-172 18-90 (255)
264 3o4f_A Spermidine synthase; am 98.4 8.1E-07 2.8E-11 75.6 8.2 100 112-214 81-197 (294)
265 3b5i_A S-adenosyl-L-methionine 98.4 6.1E-06 2.1E-10 72.7 14.0 103 115-220 53-230 (374)
266 3v97_A Ribosomal RNA large sub 98.4 1.5E-06 5E-11 82.9 10.2 110 102-216 180-348 (703)
267 4gqb_A Protein arginine N-meth 98.3 8.2E-07 2.8E-11 83.0 6.5 123 79-211 327-463 (637)
268 1rjd_A PPM1P, carboxy methyl t 98.3 2.6E-05 8.8E-10 67.7 14.9 104 113-220 96-237 (334)
269 2r6z_A UPF0341 protein in RSP 98.2 2.1E-06 7.1E-11 72.0 7.1 72 112-185 81-173 (258)
270 2dul_A N(2),N(2)-dimethylguano 98.2 2.9E-06 9.9E-11 75.0 7.8 93 114-215 47-164 (378)
271 2efj_A 3,7-dimethylxanthine me 98.2 1.2E-05 4.2E-10 70.8 11.7 141 115-258 53-280 (384)
272 3bt7_A TRNA (uracil-5-)-methyl 98.2 1.7E-06 5.9E-11 76.2 5.8 89 115-216 214-327 (369)
273 2b9e_A NOL1/NOP2/SUN domain fa 98.1 1.5E-05 5E-10 68.6 10.3 68 112-179 100-180 (309)
274 2ar0_A M.ecoki, type I restric 98.1 1.3E-05 4.5E-10 74.0 9.3 108 104-216 161-313 (541)
275 3axs_A Probable N(2),N(2)-dime 98.1 4.2E-06 1.4E-10 74.2 5.7 93 114-215 52-158 (392)
276 3evf_A RNA-directed RNA polyme 98.0 1E-05 3.5E-10 67.7 7.6 104 112-219 72-187 (277)
277 3ua3_A Protein arginine N-meth 98.0 4.5E-06 1.5E-10 78.3 5.8 124 77-211 380-530 (745)
278 1m6e_X S-adenosyl-L-methionnin 98.0 3.4E-05 1.2E-09 67.4 10.9 143 113-258 50-268 (359)
279 2k4m_A TR8_protein, UPF0146 pr 98.0 1.7E-05 5.7E-10 60.1 7.6 85 112-217 33-123 (153)
280 3gcz_A Polyprotein; flavivirus 97.9 9.6E-06 3.3E-10 68.0 5.4 107 101-213 79-199 (282)
281 2oyr_A UPF0341 protein YHIQ; a 97.8 2.3E-05 7.8E-10 65.5 5.9 80 102-185 76-176 (258)
282 1wg8_A Predicted S-adenosylmet 97.8 3.9E-05 1.3E-09 64.5 7.2 77 100-180 10-96 (285)
283 3c6k_A Spermine synthase; sper 97.8 3.3E-05 1.1E-09 67.7 6.8 97 114-214 205-330 (381)
284 3khk_A Type I restriction-modi 97.8 2.1E-05 7.3E-10 72.6 5.4 99 115-216 245-396 (544)
285 3s1s_A Restriction endonucleas 97.7 0.0001 3.6E-09 70.3 9.0 101 113-216 320-466 (878)
286 3ll7_A Putative methyltransfer 97.7 2.2E-05 7.5E-10 69.9 4.0 67 112-180 91-170 (410)
287 4auk_A Ribosomal RNA large sub 97.7 0.0003 1E-08 61.4 10.9 95 112-215 209-306 (375)
288 2uyo_A Hypothetical protein ML 97.6 0.00043 1.5E-08 59.4 10.9 103 113-221 101-223 (310)
289 3lkd_A Type I restriction-modi 97.6 0.00016 5.5E-09 66.7 8.4 100 114-216 221-359 (542)
290 2qy6_A UPF0209 protein YFCK; s 97.6 7.2E-05 2.5E-09 62.5 5.2 93 114-213 60-211 (257)
291 3eld_A Methyltransferase; flav 97.6 0.00019 6.5E-09 60.5 7.6 107 102-214 71-190 (300)
292 3cvo_A Methyltransferase-like 97.5 0.00078 2.7E-08 54.0 9.8 94 112-219 28-157 (202)
293 3tka_A Ribosomal RNA small sub 97.2 0.00096 3.3E-08 57.4 7.7 69 99-169 44-115 (347)
294 3p8z_A Mtase, non-structural p 97.0 0.001 3.5E-08 54.3 6.1 102 101-204 67-179 (267)
295 2px2_A Genome polyprotein [con 97.0 0.0025 8.4E-08 52.7 8.1 107 101-214 62-182 (269)
296 3iei_A Leucine carboxyl methyl 96.9 0.022 7.4E-07 49.2 14.0 104 114-221 90-235 (334)
297 3lkz_A Non-structural protein 96.7 0.0062 2.1E-07 51.3 8.6 112 101-219 83-207 (321)
298 2wk1_A NOVP; transferase, O-me 96.6 0.003 1E-07 53.3 5.8 97 113-217 105-245 (282)
299 4fzv_A Putative methyltransfer 96.5 0.012 4E-07 51.4 9.4 107 112-221 146-290 (359)
300 1i4w_A Mitochondrial replicati 96.4 0.0072 2.5E-07 52.6 6.9 55 115-169 59-116 (353)
301 3ufb_A Type I restriction-modi 96.3 0.026 8.7E-07 51.9 10.4 109 103-216 208-363 (530)
302 2zig_A TTHA0409, putative modi 96.0 0.011 3.9E-07 50.0 6.2 41 113-155 234-275 (297)
303 3r24_A NSP16, 2'-O-methyl tran 95.6 0.046 1.6E-06 46.1 8.2 94 112-216 107-218 (344)
304 2heo_A Z-DNA binding protein 1 95.3 0.0008 2.7E-08 44.0 -2.9 55 8-63 12-66 (67)
305 2zwa_A Leucine carboxyl methyl 95.1 0.31 1.1E-05 46.1 13.3 105 114-223 107-262 (695)
306 2vz8_A Fatty acid synthase; tr 95.1 0.0073 2.5E-07 65.0 2.2 97 115-216 1241-1349(2512)
307 1y0u_A Arsenical resistance op 94.4 0.0025 8.4E-08 44.5 -2.4 56 7-67 32-87 (96)
308 1zkd_A DUF185; NESG, RPR58, st 94.0 0.15 5.3E-06 44.7 7.6 66 81-152 53-125 (387)
309 3r4k_A Transcriptional regulat 93.9 0.0048 1.7E-07 51.3 -2.0 59 9-67 9-67 (260)
310 3b73_A PHIH1 repressor-like pr 93.9 0.0063 2.2E-07 43.8 -1.1 63 7-71 14-78 (111)
311 2oo3_A Protein involved in cat 93.9 0.27 9.4E-06 41.1 8.7 100 115-221 92-204 (283)
312 3iht_A S-adenosyl-L-methionine 93.5 0.38 1.3E-05 36.5 8.0 94 115-218 41-149 (174)
313 3g7u_A Cytosine-specific methy 93.4 0.48 1.6E-05 41.4 9.8 99 116-221 3-124 (376)
314 3mq0_A Transcriptional repress 93.3 0.012 4.1E-07 49.4 -0.6 58 9-67 33-90 (275)
315 1qbj_A Protein (double-strande 93.3 0.01 3.5E-07 40.1 -0.8 63 5-68 9-75 (81)
316 2xrn_A HTH-type transcriptiona 93.1 0.01 3.4E-07 48.8 -1.3 61 9-69 9-69 (241)
317 3pqk_A Biofilm growth-associat 92.7 0.015 5E-07 40.9 -0.8 59 5-65 22-82 (102)
318 2g7u_A Transcriptional regulat 92.6 0.016 5.6E-07 48.0 -0.7 59 9-69 17-75 (257)
319 1g60_A Adenine-specific methyl 92.6 0.13 4.3E-06 42.5 4.7 41 113-155 211-252 (260)
320 1u2w_A CADC repressor, cadmium 92.4 0.012 4.2E-07 42.9 -1.6 61 5-66 41-103 (122)
321 1mkm_A ICLR transcriptional re 92.3 0.022 7.5E-07 46.9 -0.4 57 9-66 11-67 (249)
322 2ia2_A Putative transcriptiona 92.2 0.017 5.9E-07 48.1 -1.2 56 9-66 24-79 (265)
323 1xmk_A Double-stranded RNA-spe 92.1 0.018 6.1E-07 38.7 -0.9 59 7-67 12-73 (79)
324 1g55_A DNA cytosine methyltran 92.0 0.48 1.7E-05 40.8 7.8 102 116-219 3-122 (343)
325 3jth_A Transcription activator 91.8 0.014 4.7E-07 40.6 -1.8 60 5-66 22-83 (98)
326 1qgp_A Protein (double strande 91.5 0.016 5.6E-07 38.7 -1.7 57 7-64 15-75 (77)
327 2o0y_A Transcriptional regulat 91.3 0.034 1.1E-06 46.1 -0.3 58 9-67 26-83 (260)
328 1r7j_A Conserved hypothetical 91.3 0.035 1.2E-06 38.6 -0.1 55 10-69 12-66 (95)
329 2wte_A CSA3; antiviral protein 91.3 0.024 8.4E-07 46.6 -1.2 63 7-70 153-215 (244)
330 3cuo_A Uncharacterized HTH-typ 90.5 0.022 7.6E-07 39.3 -1.9 60 6-66 24-85 (99)
331 3fwz_A Inner membrane protein 90.5 2.9 9.8E-05 30.5 9.9 87 115-213 7-103 (140)
332 1r1u_A CZRA, repressor protein 90.4 0.015 5E-07 41.3 -2.9 58 6-65 26-85 (106)
333 3f6o_A Probable transcriptiona 90.2 0.014 4.8E-07 42.2 -3.2 62 3-66 15-78 (118)
334 3vyw_A MNMC2; tRNA wobble urid 89.7 0.32 1.1E-05 41.2 4.4 92 114-212 96-223 (308)
335 1ylf_A RRF2 family protein; st 89.7 0.05 1.7E-06 41.1 -0.6 47 20-66 29-75 (149)
336 3k69_A Putative transcription 89.6 0.12 4.1E-06 39.6 1.5 47 20-66 27-74 (162)
337 1ub9_A Hypothetical protein PH 89.5 0.028 9.4E-07 38.9 -2.0 64 3-67 13-81 (100)
338 4f3n_A Uncharacterized ACR, CO 89.5 0.37 1.3E-05 42.9 4.8 60 81-149 113-177 (432)
339 3df8_A Possible HXLR family tr 89.5 0.032 1.1E-06 39.9 -1.7 60 8-69 29-92 (111)
340 2jsc_A Transcriptional regulat 89.4 0.027 9.4E-07 40.7 -2.1 59 6-66 21-81 (118)
341 2py6_A Methyltransferase FKBM; 88.9 0.52 1.8E-05 41.6 5.4 43 113-155 225-270 (409)
342 2htj_A P fimbrial regulatory p 88.9 0.061 2.1E-06 36.0 -0.6 42 9-51 3-44 (81)
343 2oqg_A Possible transcriptiona 88.8 0.029 9.8E-07 40.0 -2.4 60 6-67 21-82 (114)
344 2y75_A HTH-type transcriptiona 88.7 0.072 2.5E-06 39.0 -0.3 47 20-66 25-72 (129)
345 3lwf_A LIN1550 protein, putati 88.5 0.082 2.8E-06 40.5 -0.1 47 20-66 43-90 (159)
346 2kko_A Possible transcriptiona 88.4 0.015 5.2E-07 41.4 -4.1 58 7-66 26-85 (108)
347 3tos_A CALS11; methyltransfera 88.4 0.88 3E-05 37.5 6.0 94 115-215 70-217 (257)
348 1jhg_A Trp operon repressor; c 88.2 0.11 3.9E-06 36.4 0.5 39 5-45 44-82 (101)
349 2hzt_A Putative HTH-type trans 88.1 0.07 2.4E-06 37.7 -0.7 59 9-69 17-81 (107)
350 3f6v_A Possible transcriptiona 87.9 0.034 1.1E-06 42.3 -2.6 63 3-67 55-119 (151)
351 2k02_A Ferrous iron transport 87.6 0.084 2.9E-06 36.1 -0.5 39 11-50 7-45 (87)
352 1r1t_A Transcriptional repress 87.3 0.047 1.6E-06 39.8 -2.1 57 7-65 47-105 (122)
353 1xn7_A Hypothetical protein YH 87.3 0.089 3E-06 35.2 -0.5 38 11-49 7-44 (78)
354 3t8r_A Staphylococcus aureus C 86.9 0.097 3.3E-06 39.2 -0.6 47 20-66 27-74 (143)
355 3s2e_A Zinc-containing alcohol 86.3 2.8 9.6E-05 35.5 8.3 93 112-216 164-264 (340)
356 4a5n_A Uncharacterized HTH-typ 86.2 0.13 4.6E-06 37.9 -0.1 59 10-70 30-94 (131)
357 1on2_A Transcriptional regulat 86.0 0.11 3.8E-06 38.4 -0.7 49 20-69 21-69 (142)
358 2f2e_A PA1607; transcription f 85.9 0.12 4.2E-06 38.8 -0.5 58 10-69 28-89 (146)
359 2jt1_A PEFI protein; solution 85.9 0.063 2.2E-06 35.8 -1.9 40 11-50 9-53 (77)
360 3ggo_A Prephenate dehydrogenas 85.9 3.7 0.00013 34.6 8.8 83 116-204 34-120 (314)
361 1oyi_A Double-stranded RNA-bin 85.9 0.1 3.5E-06 35.2 -0.8 59 6-66 17-76 (82)
362 1z7u_A Hypothetical protein EF 85.7 0.1 3.5E-06 37.2 -1.0 59 9-69 25-89 (112)
363 1xd7_A YWNA; structural genomi 85.7 0.13 4.3E-06 38.6 -0.5 46 20-66 23-68 (145)
364 1yyv_A Putative transcriptiona 85.6 0.081 2.8E-06 39.0 -1.6 61 7-69 36-102 (131)
365 3nrv_A Putative transcriptiona 85.0 0.15 5.1E-06 37.7 -0.4 63 7-70 41-108 (148)
366 3ech_A MEXR, multidrug resista 84.9 0.16 5.3E-06 37.4 -0.3 63 7-70 38-105 (142)
367 2lnb_A Z-DNA-binding protein 1 84.9 0.082 2.8E-06 34.9 -1.6 40 7-46 20-59 (80)
368 2x4h_A Hypothetical protein SS 84.7 0.15 5.2E-06 37.4 -0.5 49 19-69 29-77 (139)
369 1tbx_A ORF F-93, hypothetical 84.6 0.094 3.2E-06 36.3 -1.6 61 8-69 10-76 (99)
370 3fm5_A Transcriptional regulat 84.5 0.13 4.5E-06 38.2 -0.9 64 7-70 40-108 (150)
371 3k0l_A Repressor protein; heli 84.1 0.24 8.2E-06 37.4 0.4 63 7-70 47-114 (162)
372 2pg4_A Uncharacterized protein 83.9 0.16 5.6E-06 34.8 -0.5 59 11-69 20-82 (95)
373 3bja_A Transcriptional regulat 83.9 0.18 6.1E-06 36.7 -0.4 63 7-70 34-101 (139)
374 3uko_A Alcohol dehydrogenase c 83.8 6.1 0.00021 34.0 9.4 95 112-217 191-297 (378)
375 3h2s_A Putative NADH-flavin re 83.8 7.7 0.00026 30.1 9.4 91 121-215 5-104 (224)
376 3b1f_A Putative prephenate deh 83.2 7.6 0.00026 31.9 9.5 83 116-204 7-93 (290)
377 2fa5_A Transcriptional regulat 83.0 0.2 6.9E-06 37.6 -0.4 62 8-70 51-117 (162)
378 2c7p_A Modification methylase 82.9 1.6 5.3E-05 37.3 5.1 97 115-220 11-124 (327)
379 2zkz_A Transcriptional repress 82.9 0.09 3.1E-06 36.6 -2.3 59 6-66 27-87 (99)
380 3qv2_A 5-cytosine DNA methyltr 82.8 1.5 5.2E-05 37.4 5.0 106 114-220 9-134 (327)
381 2hr3_A Probable transcriptiona 82.7 0.26 8.9E-06 36.3 0.1 65 6-70 35-104 (147)
382 2fbk_A Transcriptional regulat 82.4 0.36 1.2E-05 37.2 0.8 64 7-70 70-140 (181)
383 1pl8_A Human sorbitol dehydrog 82.3 8.8 0.0003 32.6 9.8 93 112-216 169-274 (356)
384 4ej6_A Putative zinc-binding d 82.2 7.8 0.00027 33.2 9.5 96 112-218 180-287 (370)
385 3ew7_A LMO0794 protein; Q8Y8U8 82.2 6.2 0.00021 30.5 8.2 95 117-216 2-103 (221)
386 3g3z_A NMB1585, transcriptiona 82.1 0.2 6.7E-06 37.0 -0.8 63 7-70 32-99 (145)
387 2lkp_A Transcriptional regulat 82.1 0.06 2.1E-06 38.7 -3.6 44 6-51 32-75 (119)
388 3cdh_A Transcriptional regulat 82.0 0.26 8.9E-06 36.7 -0.1 63 7-70 44-111 (155)
389 2fsw_A PG_0823 protein; alpha- 81.9 0.19 6.6E-06 35.4 -0.9 58 10-69 29-92 (107)
390 3two_A Mannitol dehydrogenase; 81.7 2.3 7.8E-05 36.2 5.8 89 112-216 174-266 (348)
391 2bv6_A MGRA, HTH-type transcri 81.4 0.16 5.6E-06 37.2 -1.5 62 8-70 39-105 (142)
392 2fu4_A Ferric uptake regulatio 81.1 0.16 5.3E-06 33.9 -1.5 44 8-51 19-68 (83)
393 3hsr_A HTH-type transcriptiona 80.7 0.16 5.6E-06 37.3 -1.7 63 7-70 37-104 (140)
394 3bdd_A Regulatory protein MARR 80.7 0.26 8.8E-06 35.9 -0.6 63 7-70 32-99 (142)
395 3jv7_A ADH-A; dehydrogenase, n 80.7 2 6.8E-05 36.6 5.0 94 112-216 169-271 (345)
396 3boq_A Transcriptional regulat 80.6 0.23 8E-06 37.2 -0.9 64 7-70 48-116 (160)
397 2gxg_A 146AA long hypothetical 80.5 0.33 1.1E-05 35.6 -0.0 62 7-70 38-104 (146)
398 3r0a_A Putative transcriptiona 80.5 0.17 5.7E-06 36.8 -1.6 45 7-51 27-72 (123)
399 3oop_A LIN2960 protein; protei 80.3 0.17 5.8E-06 37.2 -1.7 63 7-70 38-105 (143)
400 1f8f_A Benzyl alcohol dehydrog 80.0 7.7 0.00026 33.2 8.6 95 112-217 188-291 (371)
401 3eco_A MEPR; mutlidrug efflux 79.6 0.22 7.4E-06 36.4 -1.3 64 7-70 32-101 (139)
402 4dvj_A Putative zinc-dependent 79.6 2.9 9.9E-05 35.9 5.7 91 114-215 171-270 (363)
403 2nnn_A Probable transcriptiona 79.4 0.16 5.5E-06 37.0 -2.1 63 7-70 39-106 (140)
404 3bpv_A Transcriptional regulat 79.4 0.19 6.4E-06 36.6 -1.7 62 8-70 31-97 (138)
405 2fbh_A Transcriptional regulat 79.2 0.29 1E-05 35.8 -0.7 62 8-70 39-106 (146)
406 3jw4_A Transcriptional regulat 79.2 0.32 1.1E-05 36.0 -0.5 63 8-70 43-111 (148)
407 2pex_A Transcriptional regulat 78.8 0.24 8.1E-06 36.9 -1.3 63 7-70 48-115 (153)
408 1jgs_A Multiple antibiotic res 78.8 0.27 9.1E-06 35.8 -1.0 62 8-70 36-102 (138)
409 3bro_A Transcriptional regulat 78.7 0.34 1.1E-05 35.3 -0.5 62 8-69 36-103 (141)
410 2a61_A Transcriptional regulat 78.5 0.19 6.5E-06 36.9 -1.9 63 7-70 34-101 (145)
411 3tgn_A ADC operon repressor AD 78.1 0.43 1.5E-05 35.0 -0.0 61 7-69 39-104 (146)
412 3kp7_A Transcriptional regulat 78.0 0.33 1.1E-05 36.0 -0.8 61 8-70 40-107 (151)
413 3bj6_A Transcriptional regulat 78.0 0.3 1E-05 36.1 -0.9 62 8-70 42-108 (152)
414 3cjn_A Transcriptional regulat 77.9 0.3 1E-05 36.7 -1.0 63 7-70 53-120 (162)
415 2eth_A Transcriptional regulat 77.9 0.3 1E-05 36.4 -1.0 63 7-70 45-112 (154)
416 4hbl_A Transcriptional regulat 77.8 0.24 8.4E-06 36.7 -1.5 63 7-70 42-109 (149)
417 3ius_A Uncharacterized conserv 77.7 20 0.00069 28.9 10.2 94 116-216 6-103 (286)
418 4h0n_A DNMT2; SAH binding, tra 77.6 1.8 6.2E-05 37.0 3.8 102 116-219 4-122 (333)
419 1lj9_A Transcriptional regulat 77.6 0.29 9.9E-06 35.9 -1.1 62 8-70 31-97 (144)
420 1e3j_A NADP(H)-dependent ketos 77.5 11 0.00037 32.0 8.7 93 112-216 166-272 (352)
421 1jvb_A NAD(H)-dependent alcoho 77.5 8.1 0.00028 32.7 7.9 94 112-216 168-272 (347)
422 1j5y_A Transcriptional regulat 77.4 0.32 1.1E-05 38.0 -1.0 57 7-65 22-79 (187)
423 2rdp_A Putative transcriptiona 77.4 0.27 9.3E-06 36.3 -1.4 62 8-70 44-110 (150)
424 2qvo_A Uncharacterized protein 77.4 0.3 1E-05 33.5 -1.0 48 22-69 31-80 (95)
425 4eez_A Alcohol dehydrogenase 1 77.3 8.1 0.00028 32.6 7.9 94 112-216 161-264 (348)
426 3deu_A Transcriptional regulat 77.2 0.28 9.7E-06 37.3 -1.3 64 7-70 54-122 (166)
427 3f3x_A Transcriptional regulat 77.2 0.18 6.1E-06 37.1 -2.4 62 7-70 38-104 (144)
428 2pn6_A ST1022, 150AA long hypo 76.9 0.47 1.6E-05 35.4 -0.2 44 7-51 4-47 (150)
429 3pvc_A TRNA 5-methylaminomethy 76.6 1.7 6E-05 40.8 3.7 92 114-212 58-208 (689)
430 1pqw_A Polyketide synthase; ro 76.4 13 0.00046 28.3 8.3 93 112-217 36-139 (198)
431 3s2w_A Transcriptional regulat 76.3 0.28 9.5E-06 36.8 -1.6 61 9-70 53-118 (159)
432 2aef_A Calcium-gated potassium 75.9 27 0.00091 27.4 10.8 87 114-213 8-103 (234)
433 2g1u_A Hypothetical protein TM 75.8 21 0.00071 26.1 11.6 84 114-204 18-110 (155)
434 2qww_A Transcriptional regulat 75.8 0.38 1.3E-05 35.7 -0.9 63 7-70 42-111 (154)
435 3e6m_A MARR family transcripti 75.8 0.26 9E-06 37.1 -1.9 62 8-70 55-121 (161)
436 2nyx_A Probable transcriptiona 75.3 0.28 9.6E-06 37.3 -1.8 63 7-70 46-113 (168)
437 1q1h_A TFE, transcription fact 75.2 0.19 6.4E-06 35.5 -2.7 43 9-51 21-63 (110)
438 1sfx_A Conserved hypothetical 75.0 0.31 1.1E-05 33.7 -1.5 44 7-51 21-64 (109)
439 2h6e_A ADH-4, D-arabinose 1-de 74.7 5.9 0.0002 33.5 6.3 92 114-216 170-270 (344)
440 3l4b_C TRKA K+ channel protien 74.1 13 0.00043 29.1 7.7 86 117-213 2-97 (218)
441 1cdo_A Alcohol dehydrogenase; 73.8 24 0.00082 30.0 10.1 93 112-216 190-295 (374)
442 2cfx_A HTH-type transcriptiona 73.8 0.48 1.7E-05 35.1 -0.8 43 7-50 6-48 (144)
443 4aik_A Transcriptional regulat 73.8 0.57 2E-05 35.0 -0.4 63 8-70 33-100 (151)
444 2fbi_A Probable transcriptiona 73.8 0.24 8.3E-06 36.1 -2.5 63 7-70 37-104 (142)
445 3i4p_A Transcriptional regulat 73.7 0.64 2.2E-05 35.3 -0.1 43 7-50 4-46 (162)
446 1z91_A Organic hydroperoxide r 73.4 0.34 1.1E-05 35.6 -1.8 63 8-71 42-109 (147)
447 2w25_A Probable transcriptiona 73.4 0.5 1.7E-05 35.3 -0.8 43 7-50 8-50 (150)
448 3ubt_Y Modification methylase 73.4 17 0.00059 30.3 8.9 94 117-219 2-113 (331)
449 2cyy_A Putative HTH-type trans 73.1 0.55 1.9E-05 35.1 -0.6 44 7-51 8-51 (151)
450 3hrs_A Metalloregulator SCAR; 73.0 0.76 2.6E-05 36.7 0.1 51 19-70 18-68 (214)
451 3m6i_A L-arabinitol 4-dehydrog 72.2 43 0.0015 28.2 14.1 93 112-216 177-284 (363)
452 2c0c_A Zinc binding alcohol de 72.1 21 0.00072 30.3 9.2 93 112-217 161-263 (362)
453 2jhf_A Alcohol dehydrogenase E 71.9 19 0.00066 30.7 9.0 94 112-216 189-294 (374)
454 2h09_A Transcriptional regulat 71.7 0.66 2.3E-05 34.6 -0.5 54 14-69 48-101 (155)
455 3l9w_A Glutathione-regulated p 71.7 17 0.00057 31.9 8.5 89 115-214 4-101 (413)
456 1e3i_A Alcohol dehydrogenase, 71.6 30 0.001 29.5 10.1 94 112-216 193-298 (376)
457 3mag_A VP39; methylated adenin 71.3 2.9 9.8E-05 35.1 3.2 33 114-146 60-96 (307)
458 2p5v_A Transcriptional regulat 71.2 0.6 2.1E-05 35.3 -0.8 43 7-50 11-53 (162)
459 3ps9_A TRNA 5-methylaminomethy 71.2 7.6 0.00026 36.3 6.6 91 115-212 67-216 (676)
460 1v3u_A Leukotriene B4 12- hydr 71.0 14 0.00048 30.9 7.7 93 112-217 143-246 (333)
461 1boo_A Protein (N-4 cytosine-s 71.0 4.7 0.00016 34.1 4.7 41 113-155 251-292 (323)
462 2dbb_A Putative HTH-type trans 70.7 0.6 2E-05 34.8 -0.9 43 7-50 10-52 (151)
463 1s3j_A YUSO protein; structura 70.6 0.35 1.2E-05 35.9 -2.3 62 8-70 39-105 (155)
464 2e1c_A Putative HTH-type trans 70.5 0.75 2.6E-05 35.4 -0.4 44 7-51 28-71 (171)
465 2y0c_A BCEC, UDP-glucose dehyd 69.9 14 0.00049 33.0 7.9 99 113-218 6-130 (478)
466 2cg4_A Regulatory protein ASNC 69.7 0.62 2.1E-05 34.8 -1.0 43 7-50 9-51 (152)
467 2frh_A SARA, staphylococcal ac 69.7 0.95 3.2E-05 32.6 0.0 62 8-69 39-106 (127)
468 4fx0_A Probable transcriptiona 69.5 1.1 3.9E-05 33.2 0.5 62 9-70 36-105 (148)
469 2zig_A TTHA0409, putative modi 69.4 4.7 0.00016 33.6 4.3 55 157-214 19-96 (297)
470 1p0f_A NADP-dependent alcohol 69.3 18 0.00061 30.8 8.2 94 112-216 189-294 (373)
471 1uly_A Hypothetical protein PH 69.1 0.78 2.7E-05 36.0 -0.6 46 4-51 18-63 (192)
472 3nqo_A MARR-family transcripti 69.0 0.69 2.4E-05 35.9 -0.9 64 7-70 42-111 (189)
473 2o0m_A Transcriptional regulat 68.9 1 3.4E-05 38.8 0.0 60 8-70 22-81 (345)
474 2ia0_A Putative HTH-type trans 68.9 0.72 2.5E-05 35.4 -0.8 43 7-50 18-60 (171)
475 1i1g_A Transcriptional regulat 68.6 0.79 2.7E-05 33.6 -0.6 43 8-51 6-48 (141)
476 2fxa_A Protease production reg 68.3 0.42 1.4E-05 37.9 -2.3 62 8-70 50-116 (207)
477 2fzw_A Alcohol dehydrogenase c 67.4 26 0.00088 29.8 8.8 93 112-216 188-293 (373)
478 3u2r_A Regulatory protein MARR 67.4 0.42 1.4E-05 36.2 -2.5 63 8-70 48-116 (168)
479 4a2c_A Galactitol-1-phosphate 67.3 54 0.0018 27.3 11.2 96 112-218 158-263 (346)
480 1bja_A Transcription regulator 66.9 0.68 2.3E-05 32.0 -1.2 60 7-69 17-77 (95)
481 2obp_A Putative DNA-binding pr 66.6 1.4 4.9E-05 30.5 0.4 50 20-69 35-87 (96)
482 3gg2_A Sugar dehydrogenase, UD 66.6 20 0.00069 31.7 8.1 98 117-219 4-125 (450)
483 3c85_A Putative glutathione-re 65.6 40 0.0014 25.2 9.3 87 115-213 39-137 (183)
484 2hcy_A Alcohol dehydrogenase 1 65.6 20 0.00067 30.2 7.6 90 112-216 167-270 (347)
485 3c24_A Putative oxidoreductase 65.4 25 0.00087 28.6 8.1 83 116-213 12-98 (286)
486 3qwb_A Probable quinone oxidor 65.2 59 0.002 27.0 10.6 92 112-216 146-248 (334)
487 1rjw_A ADH-HT, alcohol dehydro 65.1 53 0.0018 27.4 10.2 90 112-216 162-262 (339)
488 1lss_A TRK system potassium up 64.8 33 0.0011 24.0 9.3 86 116-213 5-100 (140)
489 3tqh_A Quinone oxidoreductase; 63.9 8.8 0.0003 32.1 5.0 90 112-214 150-244 (321)
490 2o3j_A UDP-glucose 6-dehydroge 63.6 23 0.0008 31.6 8.0 96 116-216 10-135 (481)
491 3fpc_A NADP-dependent alcohol 63.3 7.7 0.00026 32.9 4.5 95 112-217 164-268 (352)
492 2qlz_A Transcription factor PF 63.2 0.17 6E-06 41.1 -5.6 63 3-67 9-79 (232)
493 1jko_C HIN recombinase, DNA-in 63.1 1.9 6.6E-05 25.0 0.5 25 21-45 21-45 (52)
494 3g79_A NDP-N-acetyl-D-galactos 62.9 53 0.0018 29.4 10.1 101 115-221 18-152 (478)
495 2p5k_A Arginine repressor; DNA 62.9 1.2 4.2E-05 27.6 -0.5 36 12-48 11-51 (64)
496 2p4w_A Transcriptional regulat 62.0 0.84 2.9E-05 36.2 -1.7 63 3-67 12-81 (202)
497 1uxc_A FRUR (1-57), fructose r 61.9 1.7 5.7E-05 27.7 0.0 24 22-45 1-24 (65)
498 3lsg_A Two-component response 61.6 2 7E-05 29.5 0.5 26 20-45 18-43 (103)
499 1v4r_A Transcriptional repress 61.3 3.8 0.00013 28.1 1.8 47 4-51 17-65 (102)
500 2i6t_A Ubiquitin-conjugating e 61.0 21 0.00072 29.8 6.8 65 115-181 14-85 (303)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=1.1e-48 Score=346.15 Aligned_cols=250 Identities=18% Similarity=0.309 Sum_probs=220.7
Q ss_pred HHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--CCCCceeecCHhhh-hhhcCCCCC--
Q 041250 2 TLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--NDEEQGYVLTNASK-LLLKDNPLS-- 76 (259)
Q Consensus 2 aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~~~~~y~~t~~~~-~l~~~~~~~-- 76 (259)
+|.+|+||||||.|.+.++|+|++|||+++|++++.+.|+|+.+..++++.. +...+.|++|+.++ +|.+++|.+
T Consensus 24 ~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~~l~~~~~~~~~ 103 (353)
T 4a6d_A 24 VLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETRGGKAFYRNTELSSDYLTTVSPTSQC 103 (353)
T ss_dssp HHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHSTTSTTCCH
T ss_pred HHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEeccCccceeeCCHHHHHHhhcCCchHHH
Confidence 7899999999999987557999999999999999999999999988876532 23456899999987 666666532
Q ss_pred ----------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCC
Q 041250 77 ----------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLN 116 (259)
Q Consensus 77 ----------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~ 116 (259)
+|+.++|+....|.++|...+....+.+++.++ +++..
T Consensus 104 ~~~~~~~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~--~~~~~ 181 (353)
T 4a6d_A 104 SMLKYMGRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD--LSVFP 181 (353)
T ss_dssp HHHHHHHHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC--GGGCS
T ss_pred HHHHHhCHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC--cccCC
Confidence 234467788889999999988888889999999 88888
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc-----CCCCeEEEeCCCCC-CCCCccEEeehhhhccCChHH
Q 041250 117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES-----DLVNLKYVGGDMFK-AISPAYAVLLKWILLDWNDEE 190 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~ri~~~~~d~~~-~~~~~D~~~~~~vlh~~~d~~ 190 (259)
+|||||||+|.++.++++++|+++++++|+|++++.+++ ..+||+++.+||++ +.|++|+|+++++||+|+|++
T Consensus 182 ~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~ 261 (353)
T 4a6d_A 182 LMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDWADGK 261 (353)
T ss_dssp EEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGGSCHHH
T ss_pred eEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeecccCCHHH
Confidence 999999999999999999999999999999999998876 46899999999998 566899999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 191 CVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 191 ~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
+.+||++++++|+| ||+|+|+|.++++++..| ....++|+.||+.++|++||.+||++|+++|
T Consensus 262 ~~~iL~~~~~al~p---gg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~~g~ert~~e~~~ll~~A 324 (353)
T 4a6d_A 262 CSHLLERIYHTCKP---GGGILVIESLLDEDRRGP---LLTQLYSLNMLVQTEGQERTPTHYHMLLSSA 324 (353)
T ss_dssp HHHHHHHHHHHCCT---TCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCC---CCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhCCCcCCCHHHHHHHHHHC
Confidence 99999999999999 999999999999887665 3457899999999999999999999999875
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=3.2e-42 Score=305.98 Aligned_cols=254 Identities=31% Similarity=0.554 Sum_probs=215.5
Q ss_pred CHHHHHHHcCcchhhhcCC-CCCCHHHHHHHcCC--Ccc---ccccceeccccccCCCCCC----C---CceeecCHhhh
Q 041250 1 MTLKCAFQLGIPDIINKHG-KPMTLNELVSALTI--NLS---KTQCFFAQQKLVSSGNNND----E---EQGYVLTNASK 67 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~-~~~t~~elA~~~~~--~~~---~l~~ll~~~~~~~~~~~~~----~---~~~y~~t~~~~ 67 (259)
++|++|+++|||++|.+.+ +|.|++|||+++|+ +++ .+.|+|+++...+++.... . ++.|.+|+.++
T Consensus 35 ~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~ 114 (364)
T 3p9c_A 35 MTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCK 114 (364)
T ss_dssp HHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGG
T ss_pred HHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCHHHH
Confidence 4799999999999999753 69999999999998 888 8999999999888753211 1 47899999999
Q ss_pred hhhcCC-CCC----------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHH
Q 041250 68 LLLKDN-PLS----------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQ 106 (259)
Q Consensus 68 ~l~~~~-~~~----------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~ 106 (259)
.|+.+. +.+ +|+.++|+..+.|.++|...+....+.+++
T Consensus 115 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~ 194 (364)
T 3p9c_A 115 FLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLE 194 (364)
T ss_dssp GSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 887653 321 344567888889999999887777777888
Q ss_pred hcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccC
Q 041250 107 KCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDW 186 (259)
Q Consensus 107 ~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~ 186 (259)
.++. +++..+|||||||+|.++..+++++|+++++++|+|.+++.++ ..+||+|+.+|+++++|..|+|++++++|+|
T Consensus 195 ~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~ 272 (364)
T 3p9c_A 195 LYHG-FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAP-QFPGVTHVGGDMFKEVPSGDTILMKWILHDW 272 (364)
T ss_dssp HCCT-TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCTTEEEEECCTTTCCCCCSEEEEESCGGGS
T ss_pred hccc-ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhh-hcCCeEEEeCCcCCCCCCCCEEEehHHhccC
Confidence 8762 5677899999999999999999999999999999999999988 4589999999999987766999999999999
Q ss_pred ChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhh-ccCccccCHHHHHHHHhcC
Q 041250 187 NDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMV-LLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 187 ~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~-~~~g~~rt~~e~~~ll~~a 259 (259)
+++++.++|++++++|+| ||+|+|+|.+.++....+........+|+.|++ ..+|++||.+||++++++|
T Consensus 273 ~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~A 343 (364)
T 3p9c_A 273 SDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGA 343 (364)
T ss_dssp CHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHC
Confidence 999999999999999999 999999999988765543222234678999995 4699999999999999876
No 3
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=9.1e-42 Score=301.26 Aligned_cols=246 Identities=22% Similarity=0.390 Sum_probs=216.5
Q ss_pred CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhhcCCCCC----
Q 041250 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLS---- 76 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~---- 76 (259)
++|++|+++|||++|.+ +|.|++|||+++|++++.++|+|+++...+++ +.+++.|.+|+.++.|.++++.+
T Consensus 37 ~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l--~~~~~~y~~t~~s~~l~~~~~~~~~~~ 112 (348)
T 3lst_A 37 AALRAAAAVGVADHLVD--GPRTPAELAAATGTDADALRRVLRLLAVRDVV--RESDGRFALTDKGAALRSDSPVPARAG 112 (348)
T ss_dssp HHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEETTEEEECTTTGGGSTTSSSCSHHH
T ss_pred HHHHHHHHcCchhHhhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCE--EecCCEEecCHHHHHHhcCCCccHHHH
Confidence 47999999999999986 79999999999999999999999999998876 33788999999999887665421
Q ss_pred ------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEE
Q 041250 77 ------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVD 120 (259)
Q Consensus 77 ------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlD 120 (259)
+|+.++|+..+.|.++|...+....+.+++.++ +++..+|||
T Consensus 113 ~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~--~~~~~~vLD 190 (348)
T 3lst_A 113 ILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD--FPATGTVAD 190 (348)
T ss_dssp HHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC--CCSSEEEEE
T ss_pred HHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC--ccCCceEEE
Confidence 344567888889999999988887888999998 788899999
Q ss_pred ecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc----CCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHHHHHH
Q 041250 121 VGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES----DLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKILK 196 (259)
Q Consensus 121 vGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~~il~ 196 (259)
||||+|.++..+++++|+++++++|+|+++...+. ..+||+++.+|+++++|+||+|++++++|+|+++++.++|+
T Consensus 191 vG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~ 270 (348)
T 3lst_A 191 VGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILT 270 (348)
T ss_dssp ETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHH
T ss_pred ECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHHHHHH
Confidence 99999999999999999999999999888873321 45799999999998777999999999999999999999999
Q ss_pred HHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 197 ~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
+++++|+| ||+|+|.|.+.++.... .....+|+.|+...+|++||.+||++++++|
T Consensus 271 ~~~~~Lkp---gG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a 326 (348)
T 3lst_A 271 NCRRVMPA---HGRVLVIDAVVPEGNDA----HQSKEMDFMMLAARTGQERTAAELEPLFTAA 326 (348)
T ss_dssp HHHHTCCT---TCEEEEEECCBCSSSSC----CHHHHHHHHHHHTTSCCCCBHHHHHHHHHHT
T ss_pred HHHHhcCC---CCEEEEEEeccCCCCCc----chhhhcChhhhhcCCCcCCCHHHHHHHHHHC
Confidence 99999999 99999999998876443 2346889999988899999999999999875
No 4
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=2.2e-41 Score=301.14 Aligned_cols=246 Identities=26% Similarity=0.462 Sum_probs=218.3
Q ss_pred CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCce-eecCHhhhhhhcCCCCC---
Q 041250 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQG-YVLTNASKLLLKDNPLS--- 76 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~-y~~t~~~~~l~~~~~~~--- 76 (259)
++|++|+++|||+.|++ +|.|++|||+++|++++.+.|+|+++...+++. +.+++. |.+|+.++.|.++++.+
T Consensus 53 ~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~-~~~~~~~y~~t~~s~~L~~~~~~~~~~ 129 (369)
T 3gwz_A 53 RAIHVAVELGVPELLQE--GPRTATALAEATGAHEQTLRRLLRLLATVGVFD-DLGHDDLFAQNALSAVLLPDPASPVAT 129 (369)
T ss_dssp HHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSE-ECSSTTEEECCHHHHTTSCCTTCHHHH
T ss_pred HHHHHHHHCChhhhhcC--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEE-EeCCCceEecCHHHHHHhcCCchhHHH
Confidence 47999999999999996 899999999999999999999999999988762 345678 99999999887665521
Q ss_pred -------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEE
Q 041250 77 -------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLV 119 (259)
Q Consensus 77 -------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vl 119 (259)
+|+.++|+..+.|.++|...+....+.+++.++ +++..+||
T Consensus 130 ~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~--~~~~~~vl 207 (369)
T 3gwz_A 130 DARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD--FSGAATAV 207 (369)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC--CTTCSEEE
T ss_pred HHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC--CccCcEEE
Confidence 345567888889999999888777788898888 77889999
Q ss_pred EecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCCCCC-CccEEeehhhhccCChHHHH
Q 041250 120 DVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWNDEECV 192 (259)
Q Consensus 120 DvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~d~~~~ 192 (259)
|||||+|.++..+++++|+++++++|+|.+++.+++ ..+||+|+.+|+++++| +||+|++++++|+|+++++.
T Consensus 208 DvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~ 287 (369)
T 3gwz_A 208 DIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVV 287 (369)
T ss_dssp EETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHH
T ss_pred EeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCCHHHHH
Confidence 999999999999999999999999999999998886 36899999999998777 79999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 193 KILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 193 ~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
++|++++++|+| ||+++|+|.+.++.... . ..++|+.|+...+|++||.+||++++++|
T Consensus 288 ~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~~~g~~~t~~e~~~ll~~a 346 (369)
T 3gwz_A 288 RILRRIATAMKP---DSRLLVIDNLIDERPAA----S-TLFVDLLLLVLVGGAERSESEFAALLEKS 346 (369)
T ss_dssp HHHHHHHTTCCT---TCEEEEEEEBCCSSCCH----H-HHHHHHHHHHHHSCCCBCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CCEEEEEEeccCCCCCC----c-hhHhhHHHHhhcCCccCCHHHHHHHHHHC
Confidence 999999999999 99999999998876543 2 46889999988999999999999999876
No 5
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=2.7e-41 Score=296.33 Aligned_cols=244 Identities=24% Similarity=0.324 Sum_probs=209.5
Q ss_pred CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhhcCCCCC----
Q 041250 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLS---- 76 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~---- 76 (259)
++|++|+++|||++|.+ +|.|++|||+++|++++.+.|+|+.+...+++. +.+++.|.+|+.++.|..+++.+
T Consensus 20 ~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~-~~~~~~y~~t~~s~~l~~~~~~~~~~~ 96 (332)
T 3i53_A 20 MAVRVAATLRVADHIAA--GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFT-RDGQGVYGLTEFGEQLRDDHAAGKRKW 96 (332)
T ss_dssp HHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-ECTTSBEEECTTGGGGSTTCTTCCHHH
T ss_pred HHHHHHHHcChHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEE-ecCCCeEEcCHhHHHHhcCCchhHHHH
Confidence 47999999999999986 799999999999999999999999999888652 34578999999999877655421
Q ss_pred -------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEE
Q 041250 77 -------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLV 119 (259)
Q Consensus 77 -------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vl 119 (259)
+|+.++|+..+.|.++|...+....+.+++.++ +++..+||
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~--~~~~~~vl 174 (332)
T 3i53_A 97 LDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD--WAALGHVV 174 (332)
T ss_dssp HCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC--CGGGSEEE
T ss_pred HHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC--CCCCCEEE
Confidence 223456667778888888776665566777777 66778999
Q ss_pred EecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCCCCC-CccEEeehhhhccCChHHHH
Q 041250 120 DVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWNDEECV 192 (259)
Q Consensus 120 DvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~d~~~~ 192 (259)
|||||+|.++..+++++|+.+++++|+|.+++.+++ ..+||+|+.+|+++++| +||+|++++++|+|+++++.
T Consensus 175 DvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~~~~~~ 254 (332)
T 3i53_A 175 DVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAV 254 (332)
T ss_dssp EETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGGSCHHHHH
T ss_pred EeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhccCCHHHHH
Confidence 999999999999999999999999999999998886 35899999999998787 79999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 193 KILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 193 ~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
++|++++++|+| ||+|+|+|.+.++. .+ ...+|+.|+...+|++||.+||++++++|
T Consensus 255 ~~l~~~~~~L~p---gG~l~i~e~~~~~~--~~-----~~~~d~~~~~~~~~~~~t~~e~~~ll~~a 311 (332)
T 3i53_A 255 AILRRCAEAAGS---GGVVLVIEAVAGDE--HA-----GTGMDLRMLTYFGGKERSLAELGELAAQA 311 (332)
T ss_dssp HHHHHHHHHHTT---TCEEEEEECCCC-----C-----CHHHHHHHHHHHSCCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCC---CCEEEEEeecCCCC--Cc-----cHHHHHHHHhhCCCCCCCHHHHHHHHHHC
Confidence 999999999999 99999999988876 22 24789999888899999999999999875
No 6
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=8e-41 Score=297.37 Aligned_cols=254 Identities=30% Similarity=0.554 Sum_probs=213.1
Q ss_pred CHHHHHHHcCcchhhhcC---CCCCCHHHHHHHcC-CCcc---ccccceeccccccCCCCC----CC---CceeecCHhh
Q 041250 1 MTLKCAFQLGIPDIINKH---GKPMTLNELVSALT-INLS---KTQCFFAQQKLVSSGNNN----DE---EQGYVLTNAS 66 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~---~~~~t~~elA~~~~-~~~~---~l~~ll~~~~~~~~~~~~----~~---~~~y~~t~~~ 66 (259)
++|++|+++|||+.|.+. ++|.|++|||+++| .++. .+.|+|+++...+++... .. +++|.+|+.+
T Consensus 36 ~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s 115 (368)
T 3reo_A 36 MALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVC 115 (368)
T ss_dssp HHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTH
T ss_pred HHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHH
Confidence 479999999999999872 24799999999998 4665 899999999888765321 11 3789999999
Q ss_pred hhhhcCC-CCC----------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHH
Q 041250 67 KLLLKDN-PLS----------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMI 105 (259)
Q Consensus 67 ~~l~~~~-~~~----------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~ 105 (259)
+.|..+. +.+ +|+.++|+..+.|.++|...+....+.++
T Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~ 195 (368)
T 3reo_A 116 KFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKIL 195 (368)
T ss_dssp HHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHH
Confidence 9776543 321 33456778888999999988877777788
Q ss_pred HhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhcc
Q 041250 106 QKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLD 185 (259)
Q Consensus 106 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~ 185 (259)
+.++. +++..+|||||||+|.++..+++++|+++++++|+|.+++.++ ..+||+|+.+|+++++|..|+|++++++|+
T Consensus 196 ~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~ 273 (368)
T 3reo_A 196 EMYNG-FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAP-AFSGVEHLGGDMFDGVPKGDAIFIKWICHD 273 (368)
T ss_dssp TTCCT-TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCTTEEEEECCTTTCCCCCSEEEEESCGGG
T ss_pred Hhccc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhh-hcCCCEEEecCCCCCCCCCCEEEEechhhc
Confidence 88762 5677899999999999999999999999999999999999988 457999999999998876699999999999
Q ss_pred CChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhc-cCccccCHHHHHHHHhcC
Q 041250 186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVL-LTGTERDEKEWAKIFADS 259 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~-~~g~~rt~~e~~~ll~~a 259 (259)
|+++++.++|++++++|+| ||+|+|+|.+.++....+........+|+.|+.. .+|++||.+||+++|++|
T Consensus 274 ~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~A 345 (368)
T 3reo_A 274 WSDEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMAS 345 (368)
T ss_dssp BCHHHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHC
Confidence 9999999999999999999 9999999999887665432223446789999876 499999999999999876
No 7
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.8e-39 Score=284.72 Aligned_cols=244 Identities=23% Similarity=0.331 Sum_probs=211.7
Q ss_pred CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhhcCCCCC----
Q 041250 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLS---- 76 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~---- 76 (259)
++|++++++|||+.|.+ +|.|++|||+++|++++.++|+|+.+...+++. +.+++.|.+|+.++.|. ++|.+
T Consensus 23 ~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~-~~~~~~y~~t~~s~~l~-~~~~~~~~~ 98 (334)
T 2ip2_A 23 RCVYVATRLGLADLIES--GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQ-GDTRDGYANTPTSHLLR-DVEGSFRDM 98 (334)
T ss_dssp HHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EETTTEEEECHHHHTTS-SSTTCSHHH
T ss_pred HHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceE-ecCCCeEecCHHHHHHh-CCCccHHHH
Confidence 37899999999999986 799999999999999999999999999888752 33458999999999877 55421
Q ss_pred -----------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEe
Q 041250 77 -----------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDV 121 (259)
Q Consensus 77 -----------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDv 121 (259)
+|+.++|+..+.|.++| ..+....+.+++.++ +++ .+||||
T Consensus 99 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~--~~~-~~vlDv 174 (334)
T 2ip2_A 99 VLFYGEEFHAAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD--FRG-RSFVDV 174 (334)
T ss_dssp HHHHTTHHHHHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC--CTT-CEEEEE
T ss_pred HHHhcCchhhHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC--CCC-CEEEEe
Confidence 23445777888899999 777777788888888 667 999999
Q ss_pred cCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCCCCC-CccEEeehhhhccCChHHHHHH
Q 041250 122 GGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWNDEECVKI 194 (259)
Q Consensus 122 GgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~d~~~~~i 194 (259)
|||+|.++..+++++|+.+++++|+|.+++.+++ ..+|++++.+|+++++| +||+|++++++|+|+++++.++
T Consensus 175 G~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~ 254 (334)
T 2ip2_A 175 GGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRL 254 (334)
T ss_dssp TCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCCHHHHHHH
T ss_pred CCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCCHHHHHHH
Confidence 9999999999999999999999999989988876 25799999999999776 5999999999999999999999
Q ss_pred HHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 195 LKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 195 l~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
|++++++|+| ||+++|.|.+.++.... .....+|+.|+...+|++||.+||++++++|
T Consensus 255 l~~~~~~L~p---gG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 312 (334)
T 2ip2_A 255 LGNCREAMAG---DGRVVVIERTISASEPS----PMSVLWDVHLFMACAGRHRTTEEVVDLLGRG 312 (334)
T ss_dssp HHHHHHHSCT---TCEEEEEECCBCSSSCC----HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHT
T ss_pred HHHHHHhcCC---CCEEEEEEeccCCCCCc----chhHHhhhHhHhhCCCcCCCHHHHHHHHHHC
Confidence 9999999999 99999999988775442 2356789999887899999999999999875
No 8
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=3.7e-39 Score=284.93 Aligned_cols=255 Identities=45% Similarity=0.794 Sum_probs=210.6
Q ss_pred CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCC---ccccccceeccccccCCCCCC--CCceeecCHhhhhhhcCCCC
Q 041250 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTIN---LSKTQCFFAQQKLVSSGNNND--EEQGYVLTNASKLLLKDNPL 75 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~---~~~l~~ll~~~~~~~~~~~~~--~~~~y~~t~~~~~l~~~~~~ 75 (259)
++|++++++|||+.|+..++|.|++|||+++|++ ++.++|+|+.+...+++. +. .++.|.+|+.+++|+++++.
T Consensus 31 ~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~-~~~~~~~~y~~t~~s~~L~~~~~~ 109 (352)
T 1fp2_A 31 MSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFE-IITKEEESYALTVASELLVRGSDL 109 (352)
T ss_dssp HHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEE-EEESSSEEEEECHHHHTTSTTSSS
T ss_pred HHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEE-EecCCCCeEeCCHHHHHHhCCCCc
Confidence 4789999999999998743599999999999995 778999999999888752 22 36899999999988876642
Q ss_pred C-----------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCC
Q 041250 76 S-----------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEG 114 (259)
Q Consensus 76 ~-----------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~ 114 (259)
+ +|+.++|+..+.|.++|...+....+. ++.+++.+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~ 188 (352)
T 1fp2_A 110 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDG 188 (352)
T ss_dssp CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTT
T ss_pred cHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhccccccc
Confidence 2 223345666778889998887766666 7777222777
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHHHH
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECVKI 194 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~~i 194 (259)
..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .++++++.+|+++++|+||+|++++++|+|+++++.++
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~ 267 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG-SNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRI 267 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-BTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHH
T ss_pred CceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc-CCCcEEEeccccCCCCCccEEEeehhhccCCHHHHHHH
Confidence 88999999999999999999999999999999999999985 35699999999988788999999999999999999999
Q ss_pred HHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 195 LKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 195 l~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
|++++++|+|.++||+++|+|.+.++....+........+|+.|+. .+|++||.+||++++++|
T Consensus 268 l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~g~~~t~~e~~~ll~~a 331 (352)
T 1fp2_A 268 LKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEA 331 (352)
T ss_dssp HHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTCCCEEHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-ccCCCCCHHHHHHHHHHC
Confidence 9999999998222699999999988765432112345678888887 669999999999999875
No 9
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=3.9e-39 Score=285.45 Aligned_cols=257 Identities=46% Similarity=0.762 Sum_probs=211.9
Q ss_pred CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCC---CccccccceeccccccCCCCC-----C-C---CceeecCHhhhh
Q 041250 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTI---NLSKTQCFFAQQKLVSSGNNN-----D-E---EQGYVLTNASKL 68 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~---~~~~l~~ll~~~~~~~~~~~~-----~-~---~~~y~~t~~~~~ 68 (259)
++|++|+++|||+.|+..++|.|++|||+++|+ +++.++|+|+.+...+++... . + ++.|.+|+.+++
T Consensus 25 ~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~s~~ 104 (358)
T 1zg3_A 25 MALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKL 104 (358)
T ss_dssp HHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHHT
T ss_pred HHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCCHHHHH
Confidence 479999999999999973359999999999999 578899999999988875322 1 1 479999999998
Q ss_pred hhcCCCCC------------------------------------------chhhcCchHHH--HHHHHHHhcchhhhHHH
Q 041250 69 LLKDNPLS------------------------------------------EYAGDESKLNN--FFNEAMASDARLATSVM 104 (259)
Q Consensus 69 l~~~~~~~------------------------------------------~~l~~~~~~~~--~f~~~m~~~~~~~~~~~ 104 (259)
|+++++.+ +|+.++|+..+ .|.++|...+.... .+
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~ 183 (358)
T 1zg3_A 105 LISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LV 183 (358)
T ss_dssp TCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-HH
T ss_pred HhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-HH
Confidence 88766422 12234556667 88888988776655 77
Q ss_pred HHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhc
Q 041250 105 IQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILL 184 (259)
Q Consensus 105 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh 184 (259)
++.+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ ..+++++.+|+++++|+||+|+++++||
T Consensus 184 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~~~~d~~~~~~~~D~v~~~~vlh 262 (358)
T 1zg3_A 184 LQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG-NENLNFVGGDMFKSIPSADAVLLKWVLH 262 (358)
T ss_dssp HHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC-CSSEEEEECCTTTCCCCCSEEEEESCGG
T ss_pred HHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc-CCCcEEEeCccCCCCCCceEEEEccccc
Confidence 888832267778999999999999999999999999999999999998885 4569999999999878899999999999
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
+|+++++.++|++++++|+|.++||+++|+|.+.++....|........+|+.|+...+|++||.+||++++++|
T Consensus 263 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~a 337 (358)
T 1zg3_A 263 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDA 337 (358)
T ss_dssp GSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHc
Confidence 999999999999999999972225999999999887665421123456889999887799999999999999875
No 10
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=3.8e-39 Score=286.07 Aligned_cols=249 Identities=18% Similarity=0.221 Sum_probs=199.3
Q ss_pred CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhhcCCCCC----
Q 041250 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLS---- 76 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~---- 76 (259)
++|++++++|||+.|++.++|.|++|||+++|++++.+.|+|+++...+++ +.++++|++|+.+++|+++++.+
T Consensus 30 ~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l--~~~~~~y~~t~~s~~L~~~~~~~~~~~ 107 (363)
T 3dp7_A 30 QVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTI--LLEEDRYVLAKAGWFLLNDKMARVNME 107 (363)
T ss_dssp HHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSE--EEETTEEEECHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCe--EecCCEEecccchHHhhCCCcccchhe
Confidence 378999999999999974479999999999999999999999999998876 44688999999999887664311
Q ss_pred -----------------------------------chhhcCchHHH----HHHHHHHhcchhhhHHHHHhcccccCCCCe
Q 041250 77 -----------------------------------EYAGDESKLNN----FFNEAMASDARLATSVMIQKCKNVFEGLNS 117 (259)
Q Consensus 77 -----------------------------------~~l~~~~~~~~----~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 117 (259)
+|+.++|+..+ .|...|.... ...+++.+. ..+..+
T Consensus 108 ~~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~l~~~~--~~~~~~ 182 (363)
T 3dp7_A 108 FNHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQS---FGKALEIVF--SHHPKR 182 (363)
T ss_dssp HHHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCC---CHHHHHHHG--GGCCSE
T ss_pred eecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhh---HHHHHHHhc--ccCCCE
Confidence 33445666554 2445554332 233444444 356789
Q ss_pred EEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCCC---CC-CccEEeehhhhccCC
Q 041250 118 LVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKA---IS-PAYAVLLKWILLDWN 187 (259)
Q Consensus 118 vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~~---~~-~~D~~~~~~vlh~~~ 187 (259)
|||||||+|.++..+++++|+++++++|+|.+++.|++ ..+||+++.+|++++ +| +||+|++++++|+|+
T Consensus 183 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~ 262 (363)
T 3dp7_A 183 LLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFS 262 (363)
T ss_dssp EEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSC
T ss_pred EEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCC
Confidence 99999999999999999999999999999999998886 236899999999984 56 699999999999999
Q ss_pred hHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhh-hhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 188 DEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSI-ETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 188 d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~-~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
++++.++|++++++|+| ||+|+|+|.+.++....+... ......++.|+...++++||.+||+++|++|
T Consensus 263 ~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~A 332 (363)
T 3dp7_A 263 EEEVISILTRVAQSIGK---DSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENA 332 (363)
T ss_dssp HHHHHHHHHHHHHHCCT---TCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCC---CcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHc
Confidence 99999999999999999 999999999888765432100 1112344455555688999999999999876
No 11
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=9.8e-39 Score=281.95 Aligned_cols=245 Identities=16% Similarity=0.196 Sum_probs=208.1
Q ss_pred CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh-hhhcCCCCC---
Q 041250 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK-LLLKDNPLS--- 76 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~-~l~~~~~~~--- 76 (259)
++|++|+++|||++|. +|.|++|||+++|++++.+.|+|+.+...+++ +..++.|.+|+.++ +|.++++.+
T Consensus 39 ~~l~~a~~lgif~~l~---~~~t~~elA~~~~~~~~~l~rlLr~L~~~gll--~~~~~~y~~t~~s~~~l~~~~~~~~~~ 113 (352)
T 3mcz_A 39 AILHYAVADKLFDLTQ---TGRTPAEVAASFGMVEGKAAILLHALAALGLL--TKEGDAFRNTALTERYLTTTSADYIGP 113 (352)
T ss_dssp HHHHHHHHTTHHHHTT---SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEETTEEEECHHHHHHHSTTCTTCCHH
T ss_pred HHHHHHHHCChHHHhC---CCCCHHHHHHHhCcChHHHHHHHHHHHHCCCe--EecCCeeecCHHHHhhccCCChhhHHH
Confidence 3799999999999997 49999999999999999999999999988875 44557899999997 666665532
Q ss_pred ----------------c--------------hhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCC-CCeEEEecCCc
Q 041250 77 ----------------E--------------YAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEG-LNSLVDVGGGT 125 (259)
Q Consensus 77 ----------------~--------------~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~-~~~vlDvGgG~ 125 (259)
+ ++..+|+..+.|.++|...... ...+++.++ +.+ ..+|||||||+
T Consensus 114 ~~~~~~~~~~~~~~l~~~l~~g~~~~f~~~~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~--~~~~~~~vlDvG~G~ 190 (352)
T 3mcz_A 114 IVEHQYLQWDNWPRLGEILRSEKPLAFQQESRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG--VFARARTVIDLAGGH 190 (352)
T ss_dssp HHHHHHTTTTTGGGHHHHHTCSSCCTTSHHHHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG--GGTTCCEEEEETCTT
T ss_pred HHHHhHHHHHHHHHHHHHHhCCCCCCcccccccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC--CcCCCCEEEEeCCCc
Confidence 1 1235677788899999873222 236788888 665 89999999999
Q ss_pred hHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCCC---CC-CccEEeehhhhccCChHHHHHHH
Q 041250 126 GTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKA---IS-PAYAVLLKWILLDWNDEECVKIL 195 (259)
Q Consensus 126 G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~~---~~-~~D~~~~~~vlh~~~d~~~~~il 195 (259)
|.++..+++++|+++++++|+|.+++.+++ ..+|++++.+|++++ .+ +||+|++++++|+|+++++.++|
T Consensus 191 G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l 270 (352)
T 3mcz_A 191 GTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVI 270 (352)
T ss_dssp CHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHH
Confidence 999999999999999999999999988876 346899999999984 55 49999999999999999999999
Q ss_pred HHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhcc-CccccCHHHHHHHHhcC
Q 041250 196 KKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLL-TGTERDEKEWAKIFADS 259 (259)
Q Consensus 196 ~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~-~g~~rt~~e~~~ll~~a 259 (259)
++++++|+| ||+++|+|.+.++....+ ....++|+.|+..+ +|++||.+||++++++|
T Consensus 271 ~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 329 (352)
T 3mcz_A 271 GHAAGLVKP---GGALLILTMTMNDDRVTP---ALSADFSLHMMVNTNHGELHPTPWIAGVVRDA 329 (352)
T ss_dssp HHHHHTEEE---EEEEEEEEECCCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHT
T ss_pred HHHHHHcCC---CCEEEEEEeccCCCCCCC---chHHHhhHHHHhhCCCCCcCCHHHHHHHHHHC
Confidence 999999999 999999999998876554 34578999998765 89999999999999875
No 12
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=3e-38 Score=281.15 Aligned_cols=254 Identities=29% Similarity=0.504 Sum_probs=210.9
Q ss_pred CHHHHHHHcCcchhhhcCCCC---CCHHHHHHHcCC------CccccccceeccccccCCCCC----CC---CceeecCH
Q 041250 1 MTLKCAFQLGIPDIINKHGKP---MTLNELVSALTI------NLSKTQCFFAQQKLVSSGNNN----DE---EQGYVLTN 64 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~~~---~t~~elA~~~~~------~~~~l~~ll~~~~~~~~~~~~----~~---~~~y~~t~ 64 (259)
++|++|+++|||+.|++.++| .|++|||+++|+ +++.+.|+|+.+...+++... .+ ++.|.+|+
T Consensus 39 ~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~ 118 (372)
T 1fp1_D 39 AVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSM 118 (372)
T ss_dssp HHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECT
T ss_pred HHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEecccccCCCCcCCeEecCH
Confidence 478999999999999973216 999999999999 678999999999988876322 11 36999999
Q ss_pred hhhhhhcCCC-CC-----------------------------------------chhhcCchHHHHHHHHHHhcchhhhH
Q 041250 65 ASKLLLKDNP-LS-----------------------------------------EYAGDESKLNNFFNEAMASDARLATS 102 (259)
Q Consensus 65 ~~~~l~~~~~-~~-----------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~ 102 (259)
.+++|+++++ .+ +|+..+|+..+.|.++|...+....+
T Consensus 119 ~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~ 198 (372)
T 1fp1_D 119 VGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMK 198 (372)
T ss_dssp TGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHH
Confidence 9998887654 11 12234566777899999887776667
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhh
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWI 182 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~v 182 (259)
.+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .++++++.+|+++++|.+|+|+++++
T Consensus 199 ~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-~~~v~~~~~d~~~~~~~~D~v~~~~~ 276 (372)
T 1fp1_D 199 RMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP-LSGIEHVGGDMFASVPQGDAMILKAV 276 (372)
T ss_dssp HHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-CTTEEEEECCTTTCCCCEEEEEEESS
T ss_pred HHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh-cCCCEEEeCCcccCCCCCCEEEEecc
Confidence 7888875 256778999999999999999999999999999999999999885 46799999999998778999999999
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
+|+|+++++.++|++++++|+| ||+++|.|.+.++....+........+|+.|+...+|++||.+||++++++|
T Consensus 277 lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a 350 (372)
T 1fp1_D 277 CHNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLS 350 (372)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHC
Confidence 9999999999999999999999 9999999999887654321111356788888876689999999999999875
No 13
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=3.4e-37 Score=270.07 Aligned_cols=247 Identities=18% Similarity=0.226 Sum_probs=212.7
Q ss_pred CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh-hhhhcCCCCC---
Q 041250 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS-KLLLKDNPLS--- 76 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~-~~l~~~~~~~--- 76 (259)
++|++++++|||+.|++ +|.|++|||+++|++++.++|+|+.+...+++ +.+++.|++|+.+ ++|.++++.+
T Consensus 21 ~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l--~~~~~~y~~t~~~~~~l~~~~~~~~~~ 96 (335)
T 2r3s_A 21 AAIKAAVELNVFTAISQ--GIESSQSLAQKCQTSERGMRMLCDYLVIIGFM--TKQAEGYRLTSDSAMFLDRQSKFYVGD 96 (335)
T ss_dssp HHHHHHHHTTHHHHHTT--SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEETTEEEECHHHHHHTCTTSTTCCGG
T ss_pred HHHHHHHHcChHHHHhc--CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCe--EecCCEEecCHHHHHHhccCCcHHHHH
Confidence 37899999999999996 89999999999999999999999999998876 4467899999999 6787765422
Q ss_pred -------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhccccc--CCCCeEEEecC
Q 041250 77 -------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVF--EGLNSLVDVGG 123 (259)
Q Consensus 77 -------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~--~~~~~vlDvGg 123 (259)
+++..+|+....|.+.|..........+++.++ + .+..+||||||
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vlDvG~ 174 (335)
T 2r3s_A 97 AIEFLLSPMITNGFNDLTAAVLKGGTAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN--ENKIEPLKVLDISA 174 (335)
T ss_dssp GHHHHTCHHHHGGGTTHHHHHHHTSCCSTTTGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT--C--CCCSEEEEETC
T ss_pred HHHHhcchhhHHHHHhHHHHHhcCCCCCCCcccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc--cccCCCCEEEEECC
Confidence 112345777888888888877766777888888 5 77889999999
Q ss_pred CchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhhccCChHHHHHHH
Q 041250 124 GTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDWNDEECVKIL 195 (259)
Q Consensus 124 G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~~d~~~~~il 195 (259)
|+|.++..+++++|+.+++++|++.+++.+++ ..+|++++.+|+++ +.+ +||+|++++++|+|+++++.++|
T Consensus 175 G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l 254 (335)
T 2r3s_A 175 SHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLL 254 (335)
T ss_dssp TTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGGSCHHHHHHHH
T ss_pred CcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhccCCHHHHHHHH
Confidence 99999999999999999999999988888876 25689999999998 666 49999999999999999999999
Q ss_pred HHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhcc-CccccCHHHHHHHHhcC
Q 041250 196 KKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLL-TGTERDEKEWAKIFADS 259 (259)
Q Consensus 196 ~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~-~g~~rt~~e~~~ll~~a 259 (259)
++++++|+| ||+++|+|...++....+ .....+|+.|+... +++.+|.++|++++++|
T Consensus 255 ~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~a 313 (335)
T 2r3s_A 255 RKIKTALAV---EGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYTFAEYESMFSNA 313 (335)
T ss_dssp HHHHHHEEE---EEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHT
T ss_pred HHHHHhCCC---CcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHC
Confidence 999999999 999999999988765443 34568889888876 89999999999999875
No 14
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=9.3e-37 Score=270.18 Aligned_cols=244 Identities=19% Similarity=0.308 Sum_probs=207.3
Q ss_pred CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHh-hhhhhcCCC---CC
Q 041250 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNA-SKLLLKDNP---LS 76 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~-~~~l~~~~~---~~ 76 (259)
++|++++++|||+.|++ +|.|++|||+++|++++.++|+|+.+...+++ +..++.|++|+. +++|.++++ .+
T Consensus 46 ~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll--~~~~~~y~~t~~~~~~l~~~~~~~~~~ 121 (359)
T 1x19_A 46 SCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVI--NLEDGKWSLTEFADYMFSPTPKEPNLH 121 (359)
T ss_dssp HHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEETTEEEECHHHHHHSSSSCSBTTBC
T ss_pred HHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCe--EeeCCeEecCHHHHHHhcCCCCCcccc
Confidence 37899999999999996 89999999999999999999999999998876 444579999997 457777665 22
Q ss_pred -----------------------------chhhcCch---HHHHHHHHHHhcch-hhhHHHHHhcccccCCCCeEEEecC
Q 041250 77 -----------------------------EYAGDESK---LNNFFNEAMASDAR-LATSVMIQKCKNVFEGLNSLVDVGG 123 (259)
Q Consensus 77 -----------------------------~~l~~~~~---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~~~~~vlDvGg 123 (259)
+|+..+|+ ..+.|...|...+. ...+.+++.++ +.+..+||||||
T Consensus 122 ~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~ 199 (359)
T 1x19_A 122 QTPVAKAMAFLADDFYMGLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGG 199 (359)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHTTSCCCCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECC
Confidence 23446788 89999999999887 77788888888 778899999999
Q ss_pred CchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCCCccEEeehhhhccCChHHHHHHHH
Q 041250 124 GTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AISPAYAVLLKWILLDWNDEECVKILK 196 (259)
Q Consensus 124 G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~~~~~~vlh~~~d~~~~~il~ 196 (259)
|+|.++..+++++|+.+++++|+|.+++.+++ ..+|++++.+|+++ +.+++|+|++++++|+|+++++.++|+
T Consensus 200 G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~ 279 (359)
T 1x19_A 200 GIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCK 279 (359)
T ss_dssp TTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHH
T ss_pred cccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHH
Confidence 99999999999999999999999999988876 35689999999998 666679999999999999999999999
Q ss_pred HHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhc-cCccc----cCHHHHHHHHhcC
Q 041250 197 KCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVL-LTGTE----RDEKEWAKIFADS 259 (259)
Q Consensus 197 ~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~-~~g~~----rt~~e~~~ll~~a 259 (259)
+++++|+| ||+++|+|...++. ..+ ....++ .|+.. .+|++ ++.+||++++++|
T Consensus 280 ~~~~~L~p---gG~l~i~e~~~~~~-~~~---~~~~~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~a 338 (359)
T 1x19_A 280 KAFDAMRS---GGRLLILDMVIDDP-ENP---NFDYLS--HYILGAGMPFSVLGFKEQARYKEILESL 338 (359)
T ss_dssp HHHTTCCT---TCEEEEEEECCCCT-TSC---CHHHHH--HHGGGGGSSCCCCCCCCGGGHHHHHHHH
T ss_pred HHHHhcCC---CCEEEEEecccCCC-CCc---hHHHHH--HHHHhcCCCCcccCCCCHHHHHHHHHHC
Confidence 99999999 99999999998766 322 122333 44443 45778 9999999999864
No 15
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=8.1e-37 Score=271.68 Aligned_cols=247 Identities=23% Similarity=0.350 Sum_probs=203.3
Q ss_pred CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCc--eeecCHhhhhhhcCCCCC--
Q 041250 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQ--GYVLTNASKLLLKDNPLS-- 76 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~y~~t~~~~~l~~~~~~~-- 76 (259)
++|.+++++|||+.|.. +|.|++|||+++|++++.++|+|+.+...+++. +..++ .|.+|+.+++|+.+++.+
T Consensus 31 ~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~-~~~~~~~~y~~t~~s~~l~~~~~~~~~ 107 (374)
T 1qzz_A 31 MALRVAATLRLVDHLLA--GADTLAGLADRTDTHPQALSRLVRHLTVVGVLE-GGEKQGRPLRPTRLGMLLADGHPAQQR 107 (374)
T ss_dssp HHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-CCCC-CCCCEECTTGGGGSTTCTTCHH
T ss_pred HHHHHHHHcChHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEE-EeCCCCeEEEEChHHHhhcCCCcccHH
Confidence 37899999999999975 899999999999999999999999999888752 33556 899999998887765422
Q ss_pred ---------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCe
Q 041250 77 ---------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNS 117 (259)
Q Consensus 77 ---------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 117 (259)
+++.++|+....|.++|........+.+++.++ +.+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~ 185 (374)
T 1qzz_A 108 AWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRH 185 (374)
T ss_dssp HHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC--CTTCCE
T ss_pred HHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC--CCCCCE
Confidence 112235556666777777666666677888887 777889
Q ss_pred EEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCCCCC-CccEEeehhhhccCChHH
Q 041250 118 LVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWNDEE 190 (259)
Q Consensus 118 vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~d~~ 190 (259)
|||||||+|.++..+++++|+++++++|++.+++.+++ ..++++++.+|+++++| +||+|++++++|+|++++
T Consensus 186 vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~ 265 (374)
T 1qzz_A 186 VLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDED 265 (374)
T ss_dssp EEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHH
T ss_pred EEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCCCHHH
Confidence 99999999999999999999999999999999988876 33599999999998777 499999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEee--eecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 191 CVKILKKCKEAITRDGKKRKVIIKDM--IKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 191 ~~~il~~~~~~L~p~~~gg~lli~e~--~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
+.++|++++++|+| ||+++|+|. +.++.... .....+|+.|+...+|+.++.++|++++++|
T Consensus 266 ~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 329 (374)
T 1qzz_A 266 ALTILRGCVRALEP---GGRLLVLDRADVEGDGADR----FFSTLLDLRMLTFMGGRVRTRDEVVDLAGSA 329 (374)
T ss_dssp HHHHHHHHHHHEEE---EEEEEEEECCH-------H----HHHHHHHHHHHHHHSCCCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCC---CcEEEEEechhhcCCCCCc----chhhhcchHHHHhCCCcCCCHHHHHHHHHHC
Confidence 99999999999999 999999999 77654322 3346788888887899999999999999875
No 16
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=1.4e-36 Score=268.93 Aligned_cols=247 Identities=24% Similarity=0.404 Sum_probs=209.7
Q ss_pred CHHHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhhcCCCCC----
Q 041250 1 MTLKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLKDNPLS---- 76 (259)
Q Consensus 1 ~aL~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~~~~~~---- 76 (259)
++|.+++++|||+.|.+ +|.|++|||+++|+++..++|+|+.+...+++. +..++.|.+|+.+++|+.+++.+
T Consensus 34 ~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~-~~~~g~y~~t~~s~~l~~~~~~~~~~~ 110 (360)
T 1tw3_A 34 MVVRTAATLRLVDHILA--GARTVKALAARTDTRPEALLRLIRHLVAIGLLE-EDAPGEFVPTEVGELLADDHPAAQRAW 110 (360)
T ss_dssp HHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EEETTEEEECTTGGGGSTTSTTCHHHH
T ss_pred HHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEE-ecCCCeEEeCHHHHHHhcCCchhHHHH
Confidence 37899999999999975 899999999999999999999999998887652 33668999999998887765422
Q ss_pred -------------------------------------chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEE
Q 041250 77 -------------------------------------EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLV 119 (259)
Q Consensus 77 -------------------------------------~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vl 119 (259)
+++..+|+....|...|...+....+.+++.++ +.+..+||
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~--~~~~~~vL 188 (360)
T 1tw3_A 111 HDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVL 188 (360)
T ss_dssp TCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC--CTTCSEEE
T ss_pred HHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC--CccCcEEE
Confidence 112235566677888888777766788888888 77788999
Q ss_pred EecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCCCCC-CccEEeehhhhccCChHHHH
Q 041250 120 DVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFKAIS-PAYAVLLKWILLDWNDEECV 192 (259)
Q Consensus 120 DvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~d~~~~ 192 (259)
|||||+|.++..+++++|+++++++|++.+++.+++ ..++++++.+|+++++| +||+|++++++|+|+++++.
T Consensus 189 DvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~ 268 (360)
T 1tw3_A 189 DVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAV 268 (360)
T ss_dssp EETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHH
T ss_pred EeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcccccCCCHHHHH
Confidence 999999999999999999999999999999988876 34599999999998776 49999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeee-ecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 193 KILKKCKEAITRDGKKRKVIIKDMI-KENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 193 ~il~~~~~~L~p~~~gg~lli~e~~-~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
++|++++++|+| ||+++|.|.. .++.... .....+|+.|+...+++.+|.++|++++++|
T Consensus 269 ~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 329 (360)
T 1tw3_A 269 RILTRCAEALEP---GGRILIHERDDLHENSFN----EQFTELDLRMLVFLGGALRTREKWDGLAASA 329 (360)
T ss_dssp HHHHHHHHTEEE---EEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHT
T ss_pred HHHHHHHHhcCC---CcEEEEEEEeccCCCCCc----chhhhccHHHhhhcCCcCCCHHHHHHHHHHC
Confidence 999999999999 9999999998 6654332 2345788888877899999999999999875
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.81 E-value=7.4e-19 Score=148.75 Aligned_cols=108 Identities=16% Similarity=0.238 Sum_probs=96.8
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC--CCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCCCccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AISPAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~~~~~~ 181 (259)
.++..+|||||||+|.++..++++. |+++++++|+ +.+++.|++ ...+|+++++|+.+ +.+++|+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4667899999999999999999975 6789999999 899999886 35689999999998 777899999999
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK 222 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~ 222 (259)
++|++++++...+|++++++|+| ||++++.|...+++.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~~ 185 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDA 185 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSSH
T ss_pred eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCCH
Confidence 99999998888999999999999 999999998876653
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.75 E-value=3.9e-17 Score=135.19 Aligned_cols=152 Identities=13% Similarity=0.179 Sum_probs=113.7
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC-CccE
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS-PAYA 176 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~-~~D~ 176 (259)
.+++.+. ...+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+
T Consensus 34 ~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 34 VSVSIAS-VDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHTCC-CSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHhh-cCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 3444443 134568999999999999999999999999999999 889988877 33499999999998 544 5999
Q ss_pred EeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhh-----------hh--hhccC
Q 041250 177 VLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEM-----------FM--MVLLT 243 (259)
Q Consensus 177 ~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~-----------~m--~~~~~ 243 (259)
|++..++|++++.+...+|++++++|+| ||++++.+...+........ ....+... .. -....
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKE---SGIFINADLVHGETAFIENL-NKTIWRQYVENSGLTEEEIAAGYERSKL 188 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHH-HHHHHHHHHHTSSCCHHHHHTTC----C
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCChhhhhH-HHHHHHHHHHhcCCCHHHHHHHHHhccc
Confidence 9999999999998888899999999999 99999999877654321100 00001000 00 00124
Q ss_pred ccccCHHHHHHHHhcC
Q 041250 244 GTERDEKEWAKIFADS 259 (259)
Q Consensus 244 g~~rt~~e~~~ll~~a 259 (259)
...+|.++|.+++++|
T Consensus 189 ~~~~~~~~~~~ll~~a 204 (234)
T 3dtn_A 189 DKDIEMNQQLNWLKEA 204 (234)
T ss_dssp CCCCBHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHc
Confidence 4567899999999876
No 19
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.71 E-value=2e-16 Score=134.74 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=108.0
Q ss_pred CCCeEEEecCCc---hHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCC------------C--C
Q 041250 114 GLNSLVDVGGGT---GTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA------------I--S 172 (259)
Q Consensus 114 ~~~~vlDvGgG~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~------------~--~ 172 (259)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ ..++++++.+|++++ + .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 999888888899999999999 899999887 357999999999862 2 2
Q ss_pred CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHH
Q 041250 173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEW 252 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~ 252 (259)
.+|++++..+||++++++...+|++++++|+| ||+|++.+...+. .. ......+.+.........|+.+||
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~s~~ei 227 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVDTG---LP---AQQKLARITRENLGEGWARTPEEI 227 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBCSS---CH---HHHHHHHHHHHHHSCCCCBCHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecCcc---hH---HHHHHHHHHHhcCCCCccCCHHHH
Confidence 58999999999999998888999999999999 9999999976532 11 112233333222235677999999
Q ss_pred HHHHh
Q 041250 253 AKIFA 257 (259)
Q Consensus 253 ~~ll~ 257 (259)
+++|.
T Consensus 228 ~~~l~ 232 (274)
T 2qe6_A 228 ERQFG 232 (274)
T ss_dssp HHTTT
T ss_pred HHHhC
Confidence 99874
No 20
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.70 E-value=2.1e-16 Score=132.79 Aligned_cols=145 Identities=14% Similarity=0.210 Sum_probs=113.1
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC---CCCeEEEeCCCCC-CCC--Cc
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD---LVNLKYVGGDMFK-AIS--PA 174 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~--~~ 174 (259)
..+++.++ .....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. .++++++.+|+.+ +.+ .|
T Consensus 45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 44455555 5667899999999999999999987 679999999 8888888872 2799999999988 554 59
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHH
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAK 254 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ 254 (259)
|+|++.+++|++++++...+|++++++|+| ||++++.++..+...... ..+.- .....+...++.++|.+
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~ 191 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLITDYCATEKENWD------DEFKE-YVKQRKYTLITVEEYAD 191 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESCGGGCC------HHHHH-HHHHHTCCCCCHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCCcccch------HHHHH-HHhcCCCCCCCHHHHHH
Confidence 999999999999888889999999999999 999999998776522211 01111 11112445678999999
Q ss_pred HHhcC
Q 041250 255 IFADS 259 (259)
Q Consensus 255 ll~~a 259 (259)
+++++
T Consensus 192 ~l~~~ 196 (266)
T 3ujc_A 192 ILTAC 196 (266)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88764
No 21
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.70 E-value=3.6e-16 Score=132.28 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=113.7
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS- 172 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~- 172 (259)
..+++.++ .....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus 51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 44566666 6677899999999999999999987 679999999 888887775 34689999999988 655
Q ss_pred -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHH
Q 041250 173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE 251 (259)
Q Consensus 173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e 251 (259)
.||+|++..++|++++. ..+|++++++|+| ||++++.+......... .....++........+..++.++
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIADFVLLAPVEG----AKKEAVDAFRAGGGVLSLGGIDE 198 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEEEEEESSCCCH----HHHHHHHHHHHHHTCCCCCCHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEEEeeccCCCCh----hHHHHHHHHHhhcCccCCCCHHH
Confidence 49999999999999875 5899999999999 99999999877643322 11112222222223667889999
Q ss_pred HHHHHhcC
Q 041250 252 WAKIFADS 259 (259)
Q Consensus 252 ~~~ll~~a 259 (259)
|.++++++
T Consensus 199 ~~~~l~~a 206 (273)
T 3bus_A 199 YESDVRQA 206 (273)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99998864
No 22
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.69 E-value=2.3e-16 Score=132.69 Aligned_cols=146 Identities=14% Similarity=0.271 Sum_probs=111.7
Q ss_pred hhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CC
Q 041250 99 LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI 171 (259)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~ 171 (259)
.....+++.++ .....+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..++++++.+|+.+ ++
T Consensus 24 ~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~ 99 (260)
T 1vl5_A 24 SDLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF 99 (260)
T ss_dssp CCHHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS
T ss_pred HHHHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCC
Confidence 34566677766 66778999999999999999999875 8999999 889888876 23689999999988 66
Q ss_pred C--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhh-hhc-cCcccc
Q 041250 172 S--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFM-MVL-LTGTER 247 (259)
Q Consensus 172 ~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m-~~~-~~g~~r 247 (259)
+ .||+|++..++|++++. ..+|++++++|+| ||++++.+...+.... ...++.... +.. .....+
T Consensus 100 ~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 168 (260)
T 1vl5_A 100 TDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKK---GGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHHRAW 168 (260)
T ss_dssp CTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCCCCC
T ss_pred CCCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCC---CCEEEEEEcCCCCCHH------HHHHHHHHHHhcCccccCCC
Confidence 5 59999999999999875 4899999999999 9999999887654311 111222211 111 244678
Q ss_pred CHHHHHHHHhcC
Q 041250 248 DEKEWAKIFADS 259 (259)
Q Consensus 248 t~~e~~~ll~~a 259 (259)
+.++|.++++++
T Consensus 169 ~~~~~~~~l~~a 180 (260)
T 1vl5_A 169 KKSDWLKMLEEA 180 (260)
T ss_dssp BHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC
Confidence 899999998763
No 23
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.69 E-value=7.2e-16 Score=132.18 Aligned_cols=143 Identities=15% Similarity=0.218 Sum_probs=109.7
Q ss_pred HHHHHhc----ccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-
Q 041250 102 SVMIQKC----KNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK- 169 (259)
Q Consensus 102 ~~~~~~~----~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~- 169 (259)
..+++.+ . +....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+
T Consensus 68 ~~l~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 68 EWLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 144 (297)
T ss_dssp HHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHhhhccC--CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence 4455555 4 5667899999999999999999987 469999999 888888776 34789999999998
Q ss_pred CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCcccc
Q 041250 170 AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTER 247 (259)
Q Consensus 170 ~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~r 247 (259)
+++ .||+|++..++|++++ ..++|++++++|+| ||++++.++..+...... ....+++.. ......
T Consensus 145 ~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~ 212 (297)
T 2o57_A 145 PCEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRI----KLHDMG 212 (297)
T ss_dssp SSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHH----TCSSCC
T ss_pred CCCCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCC---CeEEEEEEeccCCCCchH---HHHHHHHHh----cCCCCC
Confidence 655 4999999999999988 46899999999999 999999998776543321 111111111 122356
Q ss_pred CHHHHHHHHhcC
Q 041250 248 DEKEWAKIFADS 259 (259)
Q Consensus 248 t~~e~~~ll~~a 259 (259)
+.++|.++++++
T Consensus 213 ~~~~~~~~l~~a 224 (297)
T 2o57_A 213 SLGLYRSLAKEC 224 (297)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHHHC
Confidence 888999888764
No 24
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.68 E-value=6.8e-16 Score=125.91 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=94.7
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCCCCC--CccEE
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFKAIS--PAYAV 177 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~~~~--~~D~~ 177 (259)
..+++.+.. .....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+..+ .||+|
T Consensus 35 ~~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v 111 (218)
T 3ou2_A 35 PAALERLRA-GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAV 111 (218)
T ss_dssp HHHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEE
T ss_pred HHHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEE
Confidence 334444441 445579999999999999999999 669999999 889998887 34789999999988533 59999
Q ss_pred eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
++.+++|++++++...+|+++++.|+| ||++++.+...+
T Consensus 112 ~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~ 150 (218)
T 3ou2_A 112 FFAHWLAHVPDDRFEAFWESVRSAVAP---GGVVEFVDVTDH 150 (218)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCC
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCC---CeEEEEEeCCCC
Confidence 999999999998888999999999999 999999988653
No 25
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.68 E-value=6.8e-16 Score=129.29 Aligned_cols=144 Identities=10% Similarity=0.012 Sum_probs=107.4
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS 172 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~ 172 (259)
...+++.+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+ +..
T Consensus 25 ~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 101 (256)
T 1nkv_A 25 YATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN 101 (256)
T ss_dssp HHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred HHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcC
Confidence 344555555 6677899999999999999999988 678999999 888888876 23689999999988 443
Q ss_pred -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHH
Q 041250 173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE 251 (259)
Q Consensus 173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e 251 (259)
.||+|++..++|++++ ..++|++++++|+| ||++++.++......... . .... .........++.++
T Consensus 102 ~~fD~V~~~~~~~~~~~--~~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~-~~~~~~~~~~~~~~ 169 (256)
T 1nkv_A 102 EKCDVAACVGATWIAGG--FAGAEELLAQSLKP---GGIMLIGEPYWRQLPATE---E---IAQA-CGVSSTSDFLTLPG 169 (256)
T ss_dssp SCEEEEEEESCGGGTSS--SHHHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---H---HHHT-TTCSCGGGSCCHHH
T ss_pred CCCCEEEECCChHhcCC--HHHHHHHHHHHcCC---CeEEEEecCcccCCCChH---H---HHHH-HhcccccccCCHHH
Confidence 5999999999999986 35899999999999 999999998766543321 0 0100 00111224566777
Q ss_pred HHHHHhcC
Q 041250 252 WAKIFADS 259 (259)
Q Consensus 252 ~~~ll~~a 259 (259)
|.++++++
T Consensus 170 ~~~~l~~a 177 (256)
T 1nkv_A 170 LVGAFDDL 177 (256)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHC
Confidence 77776653
No 26
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.68 E-value=4.7e-16 Score=127.36 Aligned_cols=148 Identities=11% Similarity=0.144 Sum_probs=110.1
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEeCCCCC-CCC-CccEE
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGGDMFK-AIS-PAYAV 177 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~-~~~-~~D~~ 177 (259)
..+++.+. .....+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ..+++++.+|+.+ +.+ .||+|
T Consensus 35 ~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v 110 (220)
T 3hnr_A 35 EDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTI 110 (220)
T ss_dssp HHHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEE
T ss_pred HHHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEE
Confidence 34555555 556789999999999999999998 679999999 8899888873 3599999999998 554 69999
Q ss_pred eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhh---hhhhhhc--cCccccCHHHH
Q 041250 178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFF---EMFMMVL--LTGTERDEKEW 252 (259)
Q Consensus 178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~---d~~m~~~--~~g~~rt~~e~ 252 (259)
++.+++|++++.+...+|++++++|+| ||.+++.++..+...... ...... .+..... .....++.++|
T Consensus 111 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (220)
T 3hnr_A 111 VSTYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFADTIFADQDAYD---KTVEAAKQRGFHQLANDLQTEYYTRIPVM 184 (220)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEEECBSSHHHHH---HHHHHHHHTTCHHHHHHHHHSCCCBHHHH
T ss_pred EECcchhcCChHHHHHHHHHHHHhcCC---CCEEEEEeccccChHHHH---HHHHHHHhCCCccchhhcchhhcCCHHHH
Confidence 999999999998877899999999999 999999986554322110 000000 0000000 11234588999
Q ss_pred HHHHhcC
Q 041250 253 AKIFADS 259 (259)
Q Consensus 253 ~~ll~~a 259 (259)
+++++++
T Consensus 185 ~~~l~~a 191 (220)
T 3hnr_A 185 QTIFENN 191 (220)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 9999875
No 27
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.66 E-value=1.3e-15 Score=129.96 Aligned_cols=152 Identities=10% Similarity=0.124 Sum_probs=112.6
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCc
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPA 174 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~ 174 (259)
..+++.++ ..+..+|||||||+|.++..++++++ .+++++|+ +.+++.+++ ..++++++.+|+.+....|
T Consensus 54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f 130 (287)
T 1kpg_A 54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 130 (287)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence 34555555 66678999999999999999997775 49999999 888888776 2468999999997622569
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC----Cchhh-hhhhhhhhhhh-hccCccccC
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK----DYKSI-ETQLFFEMFMM-VLLTGTERD 248 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~----~~~~~-~~~~~~d~~m~-~~~~g~~rt 248 (259)
|+|++..++|++++++...+|++++++|+| ||++++.+...+.... ..+.. ......+.... ...++..++
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 207 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS 207 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCC
Confidence 999999999999877778999999999999 9999999987664321 00000 00011111111 123667789
Q ss_pred HHHHHHHHhcC
Q 041250 249 EKEWAKIFADS 259 (259)
Q Consensus 249 ~~e~~~ll~~a 259 (259)
.++|.++++++
T Consensus 208 ~~~~~~~l~~a 218 (287)
T 1kpg_A 208 IPMVQECASAN 218 (287)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 99999998865
No 28
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.66 E-value=6.8e-16 Score=130.88 Aligned_cols=143 Identities=14% Similarity=0.256 Sum_probs=107.6
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC--CccEEeehhh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS--PAYAVLLKWI 182 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~~~~~~v 182 (259)
+....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|+++++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 46678999999999999999999999999999999 888888876 34689999999988 554 5999999999
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhh--hhccCccccCHHHHHHHHhcC
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFM--MVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m--~~~~~g~~rt~~e~~~ll~~a 259 (259)
+|++++.. .+|++++++|+| ||.+++.+.........+........+.... ....++..++..+|.+++++|
T Consensus 115 l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 188 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKP---GGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQES 188 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHT
T ss_pred hhhcCCHH--HHHHHHHHHcCC---CcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHC
Confidence 99998864 899999999999 9999998864322211110001111222111 112356667788899888765
No 29
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.66 E-value=1.7e-15 Score=126.10 Aligned_cols=144 Identities=16% Similarity=0.296 Sum_probs=111.1
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC-
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS- 172 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~- 172 (259)
...+++.++ .....+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus 10 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 85 (239)
T 1xxl_A 10 LGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 85 (239)
T ss_dssp HHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred cchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence 345666666 77788999999999999999999875 8999999 888888776 34689999999987 554
Q ss_pred -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhh-hh-ccCccccCH
Q 041250 173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFM-MV-LLTGTERDE 249 (259)
Q Consensus 173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m-~~-~~~g~~rt~ 249 (259)
.||+|++.+++|++++. ..+|++++++|+| ||++++.+...+... ....++.... +. ..+...++.
T Consensus 86 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 154 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPEDP------VLDEFVNHLNRLRDPSHVRESSL 154 (239)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCSSH------HHHHHHHHHHHHHCTTCCCCCBH
T ss_pred CcEEEEEECCchhhccCH--HHHHHHHHHHcCC---CcEEEEEEcCCCCCh------hHHHHHHHHHHhccccccCCCCH
Confidence 49999999999999874 5899999999999 999999988765431 1112222111 11 124567889
Q ss_pred HHHHHHHhcC
Q 041250 250 KEWAKIFADS 259 (259)
Q Consensus 250 ~e~~~ll~~a 259 (259)
++|.++++++
T Consensus 155 ~~~~~ll~~a 164 (239)
T 1xxl_A 155 SEWQAMFSAN 164 (239)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 9999999865
No 30
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.65 E-value=1.7e-15 Score=123.93 Aligned_cols=136 Identities=19% Similarity=0.225 Sum_probs=108.1
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS 172 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~ 172 (259)
...+++.++ .....+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++ ..++++++.+|+.+ +.+
T Consensus 26 ~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~ 103 (219)
T 3dh0_A 26 PEKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLP 103 (219)
T ss_dssp HHHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSC
T ss_pred HHHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCC
Confidence 345666666 6777899999999999999999986 8889999999 888888876 33589999999988 554
Q ss_pred --CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHH
Q 041250 173 --PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEK 250 (259)
Q Consensus 173 --~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~ 250 (259)
.||+|++..++|++++. ..+|++++++|+| ||++++.+.........+.. ...++.+
T Consensus 104 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~----------------~~~~~~~ 162 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAIIDWKKEERDKGPPP----------------EEVYSEW 162 (219)
T ss_dssp SSCEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSCCG----------------GGSCCHH
T ss_pred CCCeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEEEecccccccCCch----------------hcccCHH
Confidence 49999999999999764 5899999999999 99999998766655333210 1224677
Q ss_pred HHHHHHhcC
Q 041250 251 EWAKIFADS 259 (259)
Q Consensus 251 e~~~ll~~a 259 (259)
+|.++++++
T Consensus 163 ~~~~~l~~~ 171 (219)
T 3dh0_A 163 EVGLILEDA 171 (219)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 777777653
No 31
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.65 E-value=1.3e-15 Score=124.84 Aligned_cols=109 Identities=11% Similarity=0.071 Sum_probs=89.9
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC------C----CCeEEEeCCCCC-
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD------L----VNLKYVGGDMFK- 169 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~----~ri~~~~~d~~~- 169 (259)
..+.+.+. ..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++. . .+++++.+|+..
T Consensus 19 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (219)
T 3jwg_A 19 GTVVAVLK--SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR 96 (219)
T ss_dssp HHHHHHHH--HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC
T ss_pred HHHHHHHh--hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc
Confidence 33444444 45578999999999999999999999899999999 8889888761 1 289999999966
Q ss_pred CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 170 AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 170 ~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
+.+ .||+|++..++|++++++..++++++++.|+| ||.+++..
T Consensus 97 ~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~~ 141 (219)
T 3jwg_A 97 DKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRP---QTVIVSTP 141 (219)
T ss_dssp CGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEE
T ss_pred ccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCC---CEEEEEcc
Confidence 332 59999999999999998888999999999999 88554443
No 32
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.65 E-value=1.7e-16 Score=129.32 Aligned_cols=148 Identities=14% Similarity=0.172 Sum_probs=105.1
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS- 172 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~- 172 (259)
..+++.++ ..+. +|||||||+|.++..+++. |+.+++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus 34 ~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 34 ENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 33444444 3434 9999999999999999999 8889999999 888888876 25689999999998 655
Q ss_pred -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhh-hh-hhhhhhhhhccCccccCH
Q 041250 173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIE-TQ-LFFEMFMMVLLTGTERDE 249 (259)
Q Consensus 173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~-~~-~~~d~~m~~~~~g~~rt~ 249 (259)
.||+|++..++|++++. ..+|+++++.|+| ||++++.+...+...... ... .. ....+..........++.
T Consensus 110 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDV--ATAFREIYRILKS---GGKTYIGGGFGNKELRDS-ISAEMIRKNPDWKEFNRKNISQENV 183 (219)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEECCSSHHHHHH-HHHHHHHHCTTHHHHHHHHSSHHHH
T ss_pred ccccEEEECchHhhccCH--HHHHHHHHHhCCC---CCEEEEEeccCcHHHHHH-HHHHHHHhHHHHHhhhhhccccCCH
Confidence 49999999999999664 5799999999999 999999875433311100 000 00 000011111123345688
Q ss_pred HHHHHHHhcC
Q 041250 250 KEWAKIFADS 259 (259)
Q Consensus 250 ~e~~~ll~~a 259 (259)
++|+++++++
T Consensus 184 ~~~~~~l~~a 193 (219)
T 3dlc_A 184 ERFQNVLDEI 193 (219)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999998764
No 33
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.64 E-value=1.1e-15 Score=127.68 Aligned_cols=139 Identities=16% Similarity=0.316 Sum_probs=108.2
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC--Cc
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS--PA 174 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~--~~ 174 (259)
..+++.+. ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .|
T Consensus 83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 34555555 5567899999999999999999886 457999998 889988887 22689999999987 554 59
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHH
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAK 254 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ 254 (259)
|+|++.+++|++++++..++|++++++|+| ||++++.+........ ..+. ......++.++|++
T Consensus 160 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~ 223 (254)
T 1xtp_A 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRF---------LVDK----EDSSLTRSDIHYKR 223 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCE---------EEET----TTTEEEBCHHHHHH
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCcccc---------eecc----cCCcccCCHHHHHH
Confidence 999999999999988889999999999999 9999999875433221 1110 12334679999999
Q ss_pred HHhcC
Q 041250 255 IFADS 259 (259)
Q Consensus 255 ll~~a 259 (259)
+++++
T Consensus 224 ~l~~a 228 (254)
T 1xtp_A 224 LFNES 228 (254)
T ss_dssp HHHHH
T ss_pred HHHHC
Confidence 98753
No 34
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.64 E-value=1.8e-15 Score=127.45 Aligned_cols=131 Identities=14% Similarity=0.145 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHhcc-h--hhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCC
Q 041250 84 KLNNFFNEAMASDA-R--LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVN 159 (259)
Q Consensus 84 ~~~~~f~~~m~~~~-~--~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~r 159 (259)
.....|...+.... . .....+.+.+....++..+|||||||+|.++..+++.. .+++++|+ +.+++.+++...+
T Consensus 17 ~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~ 94 (263)
T 3pfg_A 17 EIAELYDLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPD 94 (263)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTT
T ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCC
Confidence 34455555554221 1 12233444443224556899999999999999999885 47999999 8999999875669
Q ss_pred eEEEeCCCCC-CCC-CccEEeehh-hhccCCh-HHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 160 LKYVGGDMFK-AIS-PAYAVLLKW-ILLDWND-EECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 160 i~~~~~d~~~-~~~-~~D~~~~~~-vlh~~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
++++.+|+.+ +.+ .||+|++.. ++|++++ ++..++|++++++|+| ||+++|.+...+
T Consensus 95 ~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~ 155 (263)
T 3pfg_A 95 AVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLP---DGVVVVEPWWFP 155 (263)
T ss_dssp SEEEECCTTTCCCSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEE---EEEEEECCCCCT
T ss_pred CEEEECChHHCCccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCC---CcEEEEEeccCh
Confidence 9999999998 544 599999998 9999865 5677999999999999 898888654333
No 35
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.64 E-value=1e-15 Score=125.33 Aligned_cols=109 Identities=14% Similarity=0.058 Sum_probs=90.3
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-----C-----CCeEEEeCCCCC-C
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-----L-----VNLKYVGGDMFK-A 170 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~-----~ri~~~~~d~~~-~ 170 (259)
.+.+.+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. . .+++++.+|+.. +
T Consensus 20 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 97 (217)
T 3jwh_A 20 GVVAALK--QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD 97 (217)
T ss_dssp HHHHHHH--HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC
T ss_pred HHHHHHH--hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc
Confidence 3444444 45578999999999999999999999899999999 8888888761 1 289999999966 3
Q ss_pred CC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 171 IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 171 ~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.+ .||+|++..++|++++++..++++++++.|+| ||.+++...
T Consensus 98 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~ 142 (217)
T 3jwh_A 98 KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTPN 142 (217)
T ss_dssp GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEB
T ss_pred ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEccC
Confidence 33 59999999999999998888999999999999 886655543
No 36
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.64 E-value=4e-15 Score=124.61 Aligned_cols=141 Identities=11% Similarity=0.086 Sum_probs=106.5
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC--
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-- 172 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-- 172 (259)
.++..+. .+.+..+|||||||+|.++..+++.+|. +++++|+ +.+++.+++ ..++++++.+|+.+ +.+
T Consensus 36 ~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 36 KAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence 3444443 1456679999999999999999999986 9999999 888888776 35679999999977 554
Q ss_pred CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHH
Q 041250 173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEW 252 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~ 252 (259)
.||+|++..++|+++ ..++|+++++.|+| ||++++.+.......... . ..+...- .....++.++|
T Consensus 114 ~fD~v~~~~~l~~~~---~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~---~~~~~~~--~~~~~~~~~~~ 179 (257)
T 3f4k_A 114 ELDLIWSEGAIYNIG---FERGMNEWSKYLKK---GGFIAVSEASWFTSERPA---E---IEDFWMD--AYPEISVIPTC 179 (257)
T ss_dssp CEEEEEEESCSCCCC---HHHHHHHHHTTEEE---EEEEEEEEEEESSSCCCH---H---HHHHHHH--HCTTCCBHHHH
T ss_pred CEEEEEecChHhhcC---HHHHHHHHHHHcCC---CcEEEEEEeeccCCCChH---H---HHHHHHH--hCCCCCCHHHH
Confidence 599999999999984 35799999999999 999999998755443321 1 1111111 12336788999
Q ss_pred HHHHhcC
Q 041250 253 AKIFADS 259 (259)
Q Consensus 253 ~~ll~~a 259 (259)
.+++++|
T Consensus 180 ~~~l~~a 186 (257)
T 3f4k_A 180 IDKMERA 186 (257)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 9988764
No 37
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.64 E-value=6.8e-16 Score=124.93 Aligned_cols=127 Identities=14% Similarity=0.143 Sum_probs=103.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHH
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEE 190 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~ 190 (259)
..+|||||||+|.++..+++. +.+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++.+++|++++++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 679999999999999999998 568999999 88999988767799999999988 544 599999999999999777
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 191 CVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 191 ~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
...+|++++++|+| ||++++.+...+.... +.. .......++.++|+++++++
T Consensus 120 ~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~~l~~~ 172 (203)
T 3h2b_A 120 LPDALVALRMAVED---GGGLLMSFFSGPSLEP---------MYH----PVATAYRWPLPELAQALETA 172 (203)
T ss_dssp HHHHHHHHHHTEEE---EEEEEEEEECCSSCEE---------ECC----SSSCEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC---CcEEEEEEccCCchhh---------hhc----hhhhhccCCHHHHHHHHHHC
Confidence 88999999999999 8999888764433111 000 01234567899999998864
No 38
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.63 E-value=9.3e-15 Score=126.38 Aligned_cols=144 Identities=10% Similarity=0.028 Sum_probs=109.2
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS- 172 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~- 172 (259)
..+++.++ .+....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus 106 ~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 183 (312)
T 3vc1_A 106 EFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK 183 (312)
T ss_dssp HHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC
Confidence 44555554 14567899999999999999999986 578999999 888888876 34689999999998 555
Q ss_pred -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHH
Q 041250 173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE 251 (259)
Q Consensus 173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e 251 (259)
.||+|++..++|+++ ...+|++++++|+| ||++++.+.......... ......++-.+ ....++.++
T Consensus 184 ~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~s~~~ 251 (312)
T 3vc1_A 184 GAVTASWNNESTMYVD---LHDLFSEHSRFLKV---GGRYVTITGCWNPRYGQP--SKWVSQINAHF----ECNIHSRRE 251 (312)
T ss_dssp TCEEEEEEESCGGGSC---HHHHHHHHHHHEEE---EEEEEEEEEEECTTTCSC--CHHHHHHHHHH----TCCCCBHHH
T ss_pred CCEeEEEECCchhhCC---HHHHHHHHHHHcCC---CcEEEEEEccccccccch--hHHHHHHHhhh----cCCCCCHHH
Confidence 599999999999994 67899999999999 999999998776643221 01111111111 124678899
Q ss_pred HHHHHhcC
Q 041250 252 WAKIFADS 259 (259)
Q Consensus 252 ~~~ll~~a 259 (259)
|++++++|
T Consensus 252 ~~~~l~~a 259 (312)
T 3vc1_A 252 YLRAMADN 259 (312)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHC
Confidence 99998875
No 39
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.63 E-value=2.3e-15 Score=129.47 Aligned_cols=151 Identities=10% Similarity=0.111 Sum_probs=112.1
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCc
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPA 174 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~ 174 (259)
..+++.++ ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ ..++++++.+|+.+....|
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 138 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence 34566666 66778999999999999999999987 79999999 888888876 3458999999997653369
Q ss_pred cEEeehhhhccCCh-------HHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhh-----hhhhhhhhhhh-hc
Q 041250 175 YAVLLKWILLDWND-------EECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSI-----ETQLFFEMFMM-VL 241 (259)
Q Consensus 175 D~~~~~~vlh~~~d-------~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~-----~~~~~~d~~m~-~~ 241 (259)
|+|++..++|++++ +....+++++.++|+| ||++++.+...+......... ....+.++... ..
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence 99999999999944 6677999999999999 999999988766432110000 00001122211 22
Q ss_pred cCccccCHHHHHHHHhc
Q 041250 242 LTGTERDEKEWAKIFAD 258 (259)
Q Consensus 242 ~~g~~rt~~e~~~ll~~ 258 (259)
.++..++.+++.+++++
T Consensus 216 p~~~~~s~~~~~~~l~~ 232 (302)
T 3hem_A 216 PGGRLPRISQVDYYSSN 232 (302)
T ss_dssp TTCCCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 36677888888888775
No 40
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.63 E-value=1.3e-15 Score=126.22 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=87.6
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC--CccEEeehhhhcc
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS--PAYAVLLKWILLD 185 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh~ 185 (259)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ...+++++.+|+.+..+ .||+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999876 5778999999 888888876 23579999999998333 5999999999999
Q ss_pred CChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
+++++...++++++++|+| ||++++.++.....
T Consensus 145 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~ 177 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKP---DGELITLMYPITDH 177 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEE---EEEEEEEECCCSCC
T ss_pred CCHHHHHHHHHHHHHHCCC---CcEEEEEEeccccc
Confidence 9988888999999999999 99999988765543
No 41
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.63 E-value=5e-15 Score=122.87 Aligned_cols=134 Identities=11% Similarity=0.151 Sum_probs=103.0
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC-CCC--CccEEeehhhhcc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLD 185 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~ 185 (259)
++...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++.+++|+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 345679999999999999999998 568999999 888988887 46899999999998 554 5999999999999
Q ss_pred CChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
+++. ..+|++++++|+| ||++++.+......... ..+....-.......++.++|+++++++
T Consensus 129 ~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 190 (242)
T 3l8d_A 129 TEEP--LRALNEIKRVLKS---DGYACIAILGPTAKPRE-------NSYPRLYGKDVVCNTMMPWEFEQLVKEQ 190 (242)
T ss_dssp SSCH--HHHHHHHHHHEEE---EEEEEEEEECTTCGGGG-------GGGGGGGTCCCSSCCCCHHHHHHHHHHT
T ss_pred ccCH--HHHHHHHHHHhCC---CeEEEEEEcCCcchhhh-------hhhhhhccccccccCCCHHHHHHHHHHc
Confidence 9765 4899999999999 89998887533222111 1111111111244568899999998864
No 42
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.63 E-value=2.5e-15 Score=122.20 Aligned_cols=100 Identities=7% Similarity=0.033 Sum_probs=85.7
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--C---------------CCCeEEEeCCCCC-CCC
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--D---------------LVNLKYVGGDMFK-AIS 172 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~---------------~~ri~~~~~d~~~-~~~ 172 (259)
+....+|||+|||+|..+..++++ +.+++++|+ +.+++.|++ . ..+++++.+|+++ +.+
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456789999999999999999998 569999999 899988876 1 3689999999998 432
Q ss_pred ---CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 173 ---PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 173 ---~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.||+|+.+.++|++++++..+++++++++|+| ||+++++..
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~ 141 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITL 141 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEE
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEE
Confidence 59999999999999988888899999999999 998555443
No 43
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.63 E-value=8.3e-15 Score=126.85 Aligned_cols=152 Identities=13% Similarity=0.156 Sum_probs=113.1
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCc
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPA 174 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~ 174 (259)
..+++.++ .....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+....|
T Consensus 80 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 156 (318)
T 2fk8_A 80 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 156 (318)
T ss_dssp HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence 44566666 6667899999999999999999987 569999999 888888876 2367999999987632469
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCc----hhh-hhhhhhhhhhh-hccCccccC
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDY----KSI-ETQLFFEMFMM-VLLTGTERD 248 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~----~~~-~~~~~~d~~m~-~~~~g~~rt 248 (259)
|+|++..++|++++++..++|+++.++|+| ||++++.++..+...... +.. ......+...- ...++..++
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 233 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 233 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCC
Confidence 999999999999877788999999999999 999999998765432100 000 00011121111 123567789
Q ss_pred HHHHHHHHhcC
Q 041250 249 EKEWAKIFADS 259 (259)
Q Consensus 249 ~~e~~~ll~~a 259 (259)
.++|.++++++
T Consensus 234 ~~~~~~~l~~a 244 (318)
T 2fk8_A 234 TEMMVEHGEKA 244 (318)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999998864
No 44
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.62 E-value=1.8e-16 Score=140.73 Aligned_cols=196 Identities=8% Similarity=0.012 Sum_probs=134.3
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh-hhhcCCCCC--chh----hc-
Q 041250 10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK-LLLKDNPLS--EYA----GD- 81 (259)
Q Consensus 10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~-~l~~~~~~~--~~l----~~- 81 (259)
++|..| . +|.|+.|||+.+|++++.++++|+.+...+++ +..++ |++|+.++ ++...++.+ ++. ..
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~~~~~v~~~L~~l~~~gll--~~~~~-~~lt~~~~~~l~~~~~~~~~~~~~~~~~g~ 120 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEEPLPLVVAILESLNELGYV--TFEDG-VKLTEKGEELVAEYGIGKRYDFTCPHCQGK 120 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTSCHHHHHHHHHHHHHTTSE--ECSSS-SEECHHHHHHHHHHTCCCCCC---------
T ss_pred HHHHHh-c--CCCCHHHHHHHhCCChHHHHHHHHHHhhCCcE--EECCC-EEECHHHHHHHHhcCccccccccchhhcCC
Confidence 789989 5 78999999999999999999999998887765 33335 99999876 444422211 111 00
Q ss_pred ---Cch---HHHHHHHHHHhcc-------h-h-hhHHHHHhc----ccccCCCCeEEEecCCchHHHHHHHHHCCCCeEE
Q 041250 82 ---ESK---LNNFFNEAMASDA-------R-L-ATSVMIQKC----KNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECT 142 (259)
Q Consensus 82 ---~~~---~~~~f~~~m~~~~-------~-~-~~~~~~~~~----~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~ 142 (259)
.+. ....+........ . . ..+.....+ ........+|||+| |+|.++..+++..|+.+++
T Consensus 121 g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~ 199 (373)
T 2qm3_A 121 TVDLQAFADLLEQFREIVKDRPEPLHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSGLPKRIA 199 (373)
T ss_dssp ---CGGGHHHHHHHHHHHTTCCCCCGGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHTCCSEEE
T ss_pred CcchhhhHHHHHHHHHHHhcCCccchhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEE
Confidence 111 1122222222211 1 0 111111111 10012457999999 9999999999999888999
Q ss_pred Eeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC-----CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEE
Q 041250 143 CFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-----PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKV 211 (259)
Q Consensus 143 ~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-----~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~l 211 (259)
++|+ +.+++.|++ ..++++++.+|+.+++| .||+|++...+|... ...+++++.++|+| ||++
T Consensus 200 ~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~~---~~~~l~~~~~~Lkp---gG~~ 273 (373)
T 2qm3_A 200 VLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLEA---IRAFVGRGIATLKG---PRCA 273 (373)
T ss_dssp EECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHHH---HHHHHHHHHHTBCS---TTCE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchHH---HHHHHHHHHHHccc---CCeE
Confidence 9999 899998887 23489999999988432 499999987766442 47899999999999 8977
Q ss_pred EEEeeee
Q 041250 212 IIKDMIK 218 (259)
Q Consensus 212 li~e~~~ 218 (259)
++.+...
T Consensus 274 ~~~~~~~ 280 (373)
T 2qm3_A 274 GYFGITR 280 (373)
T ss_dssp EEEEECT
T ss_pred EEEEEec
Confidence 6776653
No 45
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.62 E-value=5.3e-15 Score=131.65 Aligned_cols=136 Identities=11% Similarity=0.154 Sum_probs=108.2
Q ss_pred CCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhcccC---------C----CCeEEEeCCCCC-------C
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLESD---------L----VNLKYVGGDMFK-------A 170 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~----~ri~~~~~d~~~-------~ 170 (259)
....+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. . ++++|+.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 456799999999999999999987 8899999999 8888888762 2 799999999987 4
Q ss_pred CC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccC
Q 041250 171 IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERD 248 (259)
Q Consensus 171 ~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt 248 (259)
++ .||+|++..++|++++. ..+|++++++|+| ||++++.+...+..... ....+..+.....+..++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 230 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRD---GGELYFSDVYADRRLSE------AAQQDPILYGECLGGALY 230 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEESSCCCH------HHHHCHHHHHTTCTTCCB
T ss_pred CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCC---CCEEEEEEeccccccCH------hHhhhHHHhhcccccCCC
Confidence 44 49999999999999874 5899999999999 99999998876543221 112222333334567788
Q ss_pred HHHHHHHHhcC
Q 041250 249 EKEWAKIFADS 259 (259)
Q Consensus 249 ~~e~~~ll~~a 259 (259)
.++|.++++++
T Consensus 231 ~~~~~~ll~~a 241 (383)
T 4fsd_A 231 LEDFRRLVAEA 241 (383)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 99999999875
No 46
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.62 E-value=2.7e-15 Score=125.70 Aligned_cols=108 Identities=12% Similarity=0.145 Sum_probs=92.8
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC-CccEEe
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS-PAYAVL 178 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~~~ 178 (259)
..+++.+. .....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++..++++++.+|+.+ +.+ .||+|+
T Consensus 23 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 100 (259)
T 2p35_A 23 RDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLY 100 (259)
T ss_dssp HHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEE
Confidence 34555555 56678999999999999999999999999999999 88999888766789999999987 422 599999
Q ss_pred ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+.+++|++++ ...+|++++++|+| ||++++..+
T Consensus 101 ~~~~l~~~~~--~~~~l~~~~~~L~p---gG~l~~~~~ 133 (259)
T 2p35_A 101 ANAVFQWVPD--HLAVLSQLMDQLES---GGVLAVQMP 133 (259)
T ss_dssp EESCGGGSTT--HHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred EeCchhhCCC--HHHHHHHHHHhcCC---CeEEEEEeC
Confidence 9999999976 45899999999999 999988875
No 47
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.62 E-value=6.4e-15 Score=118.39 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=95.1
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC-C
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS-P 173 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~-~ 173 (259)
+.+++.++ ..+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .
T Consensus 22 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 97 (199)
T 2xvm_A 22 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQ 97 (199)
T ss_dssp HHHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCC
T ss_pred HHHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCC
Confidence 45666666 455679999999999999999988 669999999 888888776 33579999999987 444 5
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
||+|++..++|++++++..+++++++++|+| ||++++++...++.
T Consensus 98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~ 142 (199)
T 2xvm_A 98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTAD 142 (199)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSS
T ss_pred ceEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccCC
Confidence 9999999999999987788999999999999 99999988766543
No 48
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.61 E-value=6.6e-15 Score=122.40 Aligned_cols=130 Identities=13% Similarity=0.211 Sum_probs=100.2
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC---CCC--CccEEeehhhhcc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK---AIS--PAYAVLLKWILLD 185 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~--~~D~~~~~~vlh~ 185 (259)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++ .||+|++.+++|+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~ 113 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHFVEH 113 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEESCGGG
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECCchhh
Confidence 456689999999999999999998 557999999 8888888844 8999999876 444 4999999999999
Q ss_pred CChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
+++++...+|++++++|+| ||++++..+... . . ....+. .....+....+.++|+++++++
T Consensus 114 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~---~---~---~~~~~~-~~~~~~~~~~~~~~l~~~l~~a 174 (240)
T 3dli_A 114 LDPERLFELLSLCYSKMKY---SSYIVIESPNPT---S---L---YSLINF-YIDPTHKKPVHPETLKFILEYL 174 (240)
T ss_dssp SCGGGHHHHHHHHHHHBCT---TCCEEEEEECTT---S---H---HHHHHH-TTSTTCCSCCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC---CcEEEEEeCCcc---h---h---HHHHHH-hcCccccccCCHHHHHHHHHHC
Confidence 9988788999999999999 999988765311 1 0 111121 1112345667888898888753
No 49
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.61 E-value=4e-15 Score=126.98 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=89.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-CccEEeehhhh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PAYAVLLKWIL 183 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~~~~~~vl 183 (259)
..+..+|||||||+|.++..+++.+|+ .+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 556789999999999999999999995 89999999 888887776 34489999999998 555 59999999999
Q ss_pred ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
|++++. .++++++++.|+| ||++++.++.
T Consensus 100 ~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~ 128 (284)
T 3gu3_A 100 LHMTTP--ETMLQKMIHSVKK---GGKIICFEPH 128 (284)
T ss_dssp GGCSSH--HHHHHHHHHTEEE---EEEEEEEECC
T ss_pred hcCCCH--HHHHHHHHHHcCC---CCEEEEEecc
Confidence 999875 4899999999999 9999999875
No 50
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.61 E-value=6.6e-15 Score=121.81 Aligned_cols=103 Identities=20% Similarity=0.197 Sum_probs=87.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC-CccEEee-hhhhccCCh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS-PAYAVLL-KWILLDWND 188 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~~~~-~~vlh~~~d 188 (259)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++ ..++|++++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 5568999999999999999999976 8999999 89999988766789999999988 444 5999994 558888754
Q ss_pred -HHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 189 -EECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 189 -~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
++..++|++++++|+| ||++++.+...++
T Consensus 117 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~ 146 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEP---GGVVVVEPWWFPE 146 (239)
T ss_dssp HHHHHHHHHHHHHTEEE---EEEEEECCCCCTT
T ss_pred HHHHHHHHHHHHHhcCC---CeEEEEEeccCcc
Confidence 6778999999999999 8998887765544
No 51
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.61 E-value=5.2e-15 Score=124.93 Aligned_cols=133 Identities=10% Similarity=0.074 Sum_probs=103.4
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~ 181 (259)
+.+..+|||||||+|.++..+++. |..+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 456789999999999999999998 8889999999 888888876 34789999999988 554 599999999
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
++|+++ ...++++++++|+| ||++++.+.......... . ..+... ......++.++|.+++++|
T Consensus 123 ~~~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~~--~~~~~~~~~~~~~~~l~~a 186 (267)
T 3kkz_A 123 AIYNIG---FERGLNEWRKYLKK---GGYLAVSECSWFTDERPA---E---INDFWM--DAYPEIDTIPNQVAKIHKA 186 (267)
T ss_dssp CGGGTC---HHHHHHHHGGGEEE---EEEEEEEEEEESSSCCCH---H---HHHHHH--HHCTTCEEHHHHHHHHHHT
T ss_pred CceecC---HHHHHHHHHHHcCC---CCEEEEEEeeecCCCChH---H---HHHHHH--HhCCCCCCHHHHHHHHHHC
Confidence 999993 35789999999999 999999998765543321 1 111111 1123456788888888764
No 52
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.60 E-value=2.2e-15 Score=129.97 Aligned_cols=106 Identities=11% Similarity=0.093 Sum_probs=90.3
Q ss_pred cCCCCeEEEecCCchHHHHHHH-HHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIA-KAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~ 181 (259)
+.+..+|||||||+|.++..++ ..+|+.+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4667899999999999999996 6789999999999 888888876 24569999999988 544 599999999
Q ss_pred hhccCChH-HHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 182 ILLDWNDE-ECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 182 vlh~~~d~-~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
++|++++. ....++++++++|+| ||++++.+...+.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~ 232 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPP 232 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCT
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCC
Confidence 99999654 455799999999999 9999998866544
No 53
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.60 E-value=2.9e-15 Score=124.62 Aligned_cols=128 Identities=16% Similarity=0.292 Sum_probs=103.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C----CCCeEEEeCCCCC-CCC--CccEEeehhhhc
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D----LVNLKYVGGDMFK-AIS--PAYAVLLKWILL 184 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~----~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh 184 (259)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ . ..+++++.+|+.+ +.+ .||+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 46899999999999999999887 568999999 888888876 1 3469999999877 444 499999999999
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
++++++...+|++++++|+| ||++++.+...+. .. .++. ..+...++.++|+++++++
T Consensus 158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~---~~-------~~~~----~~~~~~~~~~~~~~~l~~a 215 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQE---GV-------ILDD----VDSSVCRDLDVVRRIICSA 215 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSS---SE-------EEET----TTTEEEEBHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCCC---cc-------eecc----cCCcccCCHHHHHHHHHHc
Confidence 99998888999999999999 9999999987654 11 1110 1233456899999998764
No 54
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.60 E-value=1.4e-14 Score=119.25 Aligned_cols=140 Identities=13% Similarity=0.160 Sum_probs=104.0
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C------CCCeEEEeCCCCC-CCC--CccEE
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D------LVNLKYVGGDMFK-AIS--PAYAV 177 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~------~~ri~~~~~d~~~-~~~--~~D~~ 177 (259)
++...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . .+++++..+|+.+ +.+ .||+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 345789999999999999999998 679999999 888888776 1 2378999999988 554 59999
Q ss_pred eehhhhccCCh-HHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhc---------------
Q 041250 178 LLKWILLDWND-EECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVL--------------- 241 (259)
Q Consensus 178 ~~~~vlh~~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~--------------- 241 (259)
++..++|++++ +...++|++++++|+| ||++++.++..+..... . ......++.....
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQNWHLKL--Y-RKRYLHDFPITKEEGSFLARDPETGETE 179 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCTTSHH--H-HHHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCcchhHHH--H-HHHhhhhccchhhhcceEecccccCCcc
Confidence 99999999976 4466899999999999 99999998765432211 0 1111111111100
Q ss_pred cCccccCHHHHHHHHhcC
Q 041250 242 LTGTERDEKEWAKIFADS 259 (259)
Q Consensus 242 ~~g~~rt~~e~~~ll~~a 259 (259)
.....++.++|++++++|
T Consensus 180 ~~~~~~~~~~l~~ll~~a 197 (235)
T 3sm3_A 180 FIAHHFTEKELVFLLTDC 197 (235)
T ss_dssp EEEECBCHHHHHHHHHTT
T ss_pred eeeEeCCHHHHHHHHHHc
Confidence 112568999999999875
No 55
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.59 E-value=6.6e-15 Score=120.87 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=88.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--CccEEeehhhhc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PAYAVLLKWILL 184 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh 184 (259)
....+|||||||+|.++..+++..| +++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++..++|
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 3367999999999999999999977 8999999 888888876 34899999999988 554 599999999988
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
.+..++..+++++++++|+| ||++++.++..
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~ 145 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTDL 145 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEE---EEEEEEEEECH
T ss_pred hCCHHHHHHHHHHHHHHcCC---CcEEEEEecCh
Confidence 88877788999999999999 99999988753
No 56
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.57 E-value=2.2e-14 Score=119.99 Aligned_cols=106 Identities=17% Similarity=0.069 Sum_probs=88.9
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC-CCC--CccE
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AIS--PAYA 176 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~--~~D~ 176 (259)
.+.+.++ .....+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+
T Consensus 35 ~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 35 ELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 3444444 446789999999999999999998765 8999999 889988887 35799999999987 554 5999
Q ss_pred EeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 177 VLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 177 ~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
|++..++|++++ ..++|++++++|+| ||++++...
T Consensus 112 v~~~~~l~~~~~--~~~~l~~~~~~Lkp---gG~l~~~~~ 146 (253)
T 3g5l_A 112 VLSSLALHYIAS--FDDICKKVYINLKS---SGSFIFSVE 146 (253)
T ss_dssp EEEESCGGGCSC--HHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred EEEchhhhhhhh--HHHHHHHHHHHcCC---CcEEEEEeC
Confidence 999999999966 45899999999999 899888644
No 57
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.57 E-value=1.4e-14 Score=123.12 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=91.4
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC-CccEE
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS-PAYAV 177 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~~ 177 (259)
...+++.+. .....+|||||||+|.++..+++ |+.+++++|+ +.+++.+++..++++++.+|+.+ +.+ .||+|
T Consensus 46 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 121 (279)
T 3ccf_A 46 GEDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAV 121 (279)
T ss_dssp CCHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEE
T ss_pred HHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEE
Confidence 345666666 56678999999999999999998 7889999999 89999888755889999999988 544 59999
Q ss_pred eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
++.+++|++++. ..+|++++++|+| ||++++..+
T Consensus 122 ~~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~ 155 (279)
T 3ccf_A 122 FSNAMLHWVKEP--EAAIASIHQALKS---GGRFVAEFG 155 (279)
T ss_dssp EEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEE
T ss_pred EEcchhhhCcCH--HHHHHHHHHhcCC---CcEEEEEec
Confidence 999999998874 4899999999999 899888665
No 58
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.57 E-value=5.6e-15 Score=116.16 Aligned_cols=110 Identities=19% Similarity=0.252 Sum_probs=91.8
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCC--CccEEeeh
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS--PAYAVLLK 180 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~--~~D~~~~~ 180 (259)
+++.++ ..+..+|||||||+|.++..+++... +++++|+ +.+++.+++..+++++..+| .+.+ .||+|++.
T Consensus 9 ~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~ 82 (170)
T 3i9f_A 9 YLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFA 82 (170)
T ss_dssp THHHHH--SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEE
T ss_pred HHHhcC--cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEc
Confidence 444555 56678999999999999999999874 8999999 88888888767799999999 3333 59999999
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCC
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKD 224 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~ 224 (259)
.++|++++. ..+++++++.|+| ||++++.++........
T Consensus 83 ~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~ 121 (170)
T 3i9f_A 83 NSFHDMDDK--QHVISEVKRILKD---DGRVIIIDWRKENTGIG 121 (170)
T ss_dssp SCSTTCSCH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSS
T ss_pred cchhcccCH--HHHHHHHHHhcCC---CCEEEEEEcCccccccC
Confidence 999999764 5899999999999 99999998876654443
No 59
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.57 E-value=2.6e-14 Score=118.58 Aligned_cols=135 Identities=10% Similarity=0.121 Sum_probs=99.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCCCCC--CccEEeehhhhccCCh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFKAIS--PAYAVLLKWILLDWND 188 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh~~~d 188 (259)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ...+++++.+|+.+..+ .||+|++.+++|++++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 3457899999999999999999876 6899999 889988887 22399999999987433 5999999999999987
Q ss_pred HHHHHHHHHHH-HhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhh---------hhhhccCccccCHHHHHHHHhc
Q 041250 189 EECVKILKKCK-EAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEM---------FMMVLLTGTERDEKEWAKIFAD 258 (259)
Q Consensus 189 ~~~~~il~~~~-~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~---------~m~~~~~g~~rt~~e~~~ll~~ 258 (259)
. .++|++++ ++|+| ||++++.++..... . ......... ......+...++.++|++++++
T Consensus 119 ~--~~~l~~~~~~~Lkp---gG~l~i~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (250)
T 2p7i_A 119 P--VALLKRINDDWLAE---GGRLFLVCPNANAV--S---RQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR 188 (250)
T ss_dssp H--HHHHHHHHHTTEEE---EEEEEEEEECTTCH--H---HHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhcCC---CCEEEEEcCChHHH--H---HHHHHHcCccccchhcccccccccccccCCHHHHHHHHHH
Confidence 5 58999999 99999 99999977532210 0 000000000 0001124467899999999986
Q ss_pred C
Q 041250 259 S 259 (259)
Q Consensus 259 a 259 (259)
+
T Consensus 189 ~ 189 (250)
T 2p7i_A 189 A 189 (250)
T ss_dssp T
T ss_pred C
Confidence 4
No 60
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.56 E-value=1.2e-14 Score=124.85 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=89.9
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CC----CCeEEEeCCCCC-C
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DL----VNLKYVGGDMFK-A 170 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~----~ri~~~~~d~~~-~ 170 (259)
...+++.+. . ...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .. .+++++.+|+.+ +
T Consensus 72 ~~~~~~~~~--~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 72 AREFATRTG--P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHC--C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred HHHHHHhhC--C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 344555544 2 3349999999999999999988 578999999 889988886 22 789999999998 5
Q ss_pred CC-CccEEee-hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 171 IS-PAYAVLL-KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 171 ~~-~~D~~~~-~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
.+ .||+|++ ..++|++++++..++|++++++|+| ||+|++..+..+
T Consensus 147 ~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~ 194 (299)
T 3g2m_A 147 LDKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLSLAMSE 194 (299)
T ss_dssp CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCH
T ss_pred cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecCc
Confidence 55 5998885 4788888888889999999999999 898888776544
No 61
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.56 E-value=1.4e-14 Score=122.17 Aligned_cols=98 Identities=9% Similarity=0.071 Sum_probs=84.4
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCCh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWND 188 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d 188 (259)
....+|||||||+|.++..+++.+ .+++++|+ +.+++.|+ ...+++++.+|+.+ +++ .||+|++..++|.++.
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~-~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~ 114 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQAL-RHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL 114 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCC-CCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhh-hcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH
Confidence 455799999999999999999875 47999999 89999988 56799999999988 666 4999999999987764
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 189 EECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
+ +.+++++++|+| ||.|+++.+..+
T Consensus 115 ~---~~~~e~~rvLkp---gG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 D---RFWAELRRVARP---GAVFAAVTYGLT 139 (257)
T ss_dssp H---HHHHHHHHHEEE---EEEEEEEEECCC
T ss_pred H---HHHHHHHHHcCC---CCEEEEEECCCC
Confidence 3 689999999999 999998887544
No 62
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.56 E-value=1.4e-14 Score=117.96 Aligned_cols=128 Identities=16% Similarity=0.104 Sum_probs=99.0
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC-CccEEeehhhhccCCh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDWND 188 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~~d 188 (259)
+....+|||||||+|.++..+++. +.+++++|+ +.+++.+++.. ++.+..+|+.+ +.. .||+|++.+++|++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL-GRPVRTMLFHQLDAIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH-TSCCEECCGGGCCCCSCEEEEEECSCGGGSCH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc-CCceEEeeeccCCCCCcEEEEEecCchhhcCH
Confidence 455679999999999999999988 568999999 88888888532 67888999887 433 5999999999999998
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 189 EECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
++...+|++++++|+| ||++++........... ... ..-..++.++|+++++++
T Consensus 118 ~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~--------~~~------~~~~~~~~~~~~~~l~~a 171 (211)
T 3e23_A 118 DELADVLKLIWRALKP---GGLFYASYKSGEGEGRD--------KLA------RYYNYPSEEWLRARYAEA 171 (211)
T ss_dssp HHHHHHHHHHHHHEEE---EEEEEEEEECCSSCEEC--------TTS------CEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEEEcCCCccccc--------ccc------hhccCCCHHHHHHHHHhC
Confidence 8889999999999999 89988875432221110 000 011346888998888753
No 63
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.55 E-value=4.4e-14 Score=118.77 Aligned_cols=101 Identities=6% Similarity=-0.042 Sum_probs=86.2
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C---------------------CCCeEEEeCCCCC
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D---------------------LVNLKYVGGDMFK 169 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~---------------------~~ri~~~~~d~~~ 169 (259)
....+|||+|||+|..+..|++. +.+++++|+ +.+++.|++ . ..+++|+.+|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 35689999999999999999987 569999999 889988864 2 2689999999998
Q ss_pred -CC---CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 170 -AI---SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 170 -~~---~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
+. ..||+|+.+.++|.+++++..+++++++++|+| ||+++++....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~ 194 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSY 194 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEEC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEec
Confidence 43 359999999999999988788999999999999 99987665543
No 64
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.55 E-value=1.2e-14 Score=121.02 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=90.2
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC-CCC-------CccEEeeh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AIS-------PAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~-------~~D~~~~~ 180 (259)
.....+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .+|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45567899999999999999999987 7999999 889988887 44599999999998 322 28999999
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
.++|++++++..+++++++++|+| ||+++|.+...+
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~ 167 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTG 167 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTT
T ss_pred chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCcc
Confidence 999999988888999999999999 999999998544
No 65
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.54 E-value=1.4e-14 Score=117.56 Aligned_cols=143 Identities=12% Similarity=0.060 Sum_probs=102.4
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--CccEEeehhhh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PAYAVLLKWIL 183 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vl 183 (259)
.....+|||+|||+|.++..++.. ++.+++++|. +.+++.+++ ...+++++.+|+.+ +.+ .||+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 345679999999999986555544 5679999999 888888776 34689999999988 554 49999999999
Q ss_pred ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhh-hhhhccCccccCHHHHHHHHhc
Q 041250 184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEM-FMMVLLTGTERDEKEWAKIFAD 258 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~-~m~~~~~g~~rt~~e~~~ll~~ 258 (259)
|+++.++..+++++++++|+| ||.+++.+...++.............+.. .......+..++.+|++++|++
T Consensus 100 ~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 172 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKD 172 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTT
T ss_pred HhCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhh
Confidence 999888888999999999999 99999988876554321100000000000 0000112356788999988865
No 66
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.54 E-value=1.7e-14 Score=122.94 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=100.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-C-CC--CccEEeehhh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A-IS--PAYAVLLKWI 182 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~-~~--~~D~~~~~~v 182 (259)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++++.+|+.+ + .+ .||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 3579999999999999999998 679999999 888888876 22789999999988 3 33 5999999999
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhh--------hccCccccCHHHHHH
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMM--------VLLTGTERDEKEWAK 254 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~--------~~~~g~~rt~~e~~~ 254 (259)
+|++++. .++|++++++|+| ||.+++.+.......... .....++...- .......++.++|++
T Consensus 146 l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (285)
T 4htf_A 146 LEWVADP--RSVLQTLWSVLRP---GGVLSLMFYNAHGLLMHN---MVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYL 217 (285)
T ss_dssp GGGCSCH--HHHHHHHHHTEEE---EEEEEEEEEBHHHHHHHH---HHTTCHHHHHTTCCCC----CCCSCCBCHHHHHH
T ss_pred hhcccCH--HHHHHHHHHHcCC---CeEEEEEEeCCchHHHHH---HHhcCHHHHhhhccccccccCCCCCCCCHHHHHH
Confidence 9999875 5799999999999 899988876433211000 00000111110 011235678999999
Q ss_pred HHhcC
Q 041250 255 IFADS 259 (259)
Q Consensus 255 ll~~a 259 (259)
++++|
T Consensus 218 ~l~~a 222 (285)
T 4htf_A 218 WLEEA 222 (285)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 99875
No 67
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.54 E-value=7.2e-14 Score=117.71 Aligned_cols=107 Identities=13% Similarity=0.162 Sum_probs=89.9
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEE
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAV 177 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~ 177 (259)
..+++.++ ..+..+|||||||+|.++..+++ |+.+++++|+ +.+++.+++.. +++++.+|+.+ +.+ .||+|
T Consensus 24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~~fD~v 98 (261)
T 3ege_A 24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP-QVEWFTGYAENLALPDKSVDGV 98 (261)
T ss_dssp HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT-TEEEECCCTTSCCSCTTCBSEE
T ss_pred HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc-CCEEEECchhhCCCCCCCEeEE
Confidence 44555555 56778999999999999999997 6889999999 88888888544 99999999988 655 59999
Q ss_pred eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
++.+++|++++. .+++++++++|+ ||++++.+...+
T Consensus 99 ~~~~~l~~~~~~--~~~l~~~~~~Lk----gG~~~~~~~~~~ 134 (261)
T 3ege_A 99 ISILAIHHFSHL--EKSFQEMQRIIR----DGTIVLLTFDIR 134 (261)
T ss_dssp EEESCGGGCSSH--HHHHHHHHHHBC----SSCEEEEEECGG
T ss_pred EEcchHhhccCH--HHHHHHHHHHhC----CcEEEEEEcCCc
Confidence 999999999764 589999999998 498999887543
No 68
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.54 E-value=9.5e-14 Score=117.43 Aligned_cols=150 Identities=12% Similarity=0.063 Sum_probs=105.6
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hH------HHhhccc------CCCCeEEEeCC-
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PH------VVNGLES------DLVNLKYVGGD- 166 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~------~~~ri~~~~~d- 166 (259)
..+++.++ .....+|||||||+|.++..+++++ |+.+++++|+ +. +++.+++ ..++++++.+|
T Consensus 33 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 33 LAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 34555555 6677899999999999999999996 8889999999 43 7777765 23689999998
Q ss_pred CCC---CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhh-hhhhhhhhhh
Q 041250 167 MFK---AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIET-QLFFEMFMMV 240 (259)
Q Consensus 167 ~~~---~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~-~~~~d~~m~~ 240 (259)
+.. +++ .||+|++.+++|++++.. .+++.+++.++| ||++++.+...+...... .... ..+....+..
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 184 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV---CDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYA 184 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT---CSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHH
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC---CCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhh
Confidence 543 333 499999999999998865 377777777777 999999998876553321 1000 0011111100
Q ss_pred c------cCccccCHHHHHHHHhcC
Q 041250 241 L------LTGTERDEKEWAKIFADS 259 (259)
Q Consensus 241 ~------~~g~~rt~~e~~~ll~~a 259 (259)
. .....++.++|++++++|
T Consensus 185 ~~~~~~~~~~~~~s~~~l~~~l~~a 209 (275)
T 3bkx_A 185 IAPSDVANIRTLITPDTLAQIAHDN 209 (275)
T ss_dssp HSCCTTCSCCCCCCHHHHHHHHHHH
T ss_pred ccccccccccccCCHHHHHHHHHHC
Confidence 0 112468899999998763
No 69
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.53 E-value=8.2e-14 Score=119.60 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=87.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc----C---CCCeEEEeCCCCC-CC--------CCc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES----D---LVNLKYVGGDMFK-AI--------SPA 174 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~---~~ri~~~~~d~~~-~~--------~~~ 174 (259)
.+..+|||||||+|.++..+++.+ |..+++++|+ +.+++.+++ . ..+++++.+|+.+ +. ..|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999987 8899999999 888988876 2 6899999999987 42 249
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
|+|++..++|++ + ..+++++++++|+| ||.|++.+...+
T Consensus 115 D~V~~~~~l~~~-~--~~~~l~~~~~~Lkp---gG~l~i~~~~~~ 153 (299)
T 3g5t_A 115 DMITAVECAHWF-D--FEKFQRSAYANLRK---DGTIAIWGYADP 153 (299)
T ss_dssp EEEEEESCGGGS-C--HHHHHHHHHHHEEE---EEEEEEEEEEEE
T ss_pred eEEeHhhHHHHh-C--HHHHHHHHHHhcCC---CcEEEEEecCCc
Confidence 999999999999 3 56899999999999 999999665543
No 70
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.53 E-value=1.1e-13 Score=116.01 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=83.6
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--CccEEeehhhh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PAYAVLLKWIL 183 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vl 183 (259)
.....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++.+++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456789999999999999999987 578999999 888888776 35799999999987 554 49999999999
Q ss_pred ccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 184 LDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
|++++ ...++++++++|+| ||.+++.
T Consensus 115 ~~~~~--~~~~l~~~~~~L~p---gG~l~~~ 140 (263)
T 2yqz_A 115 HLVPD--WPKVLAEAIRVLKP---GGALLEG 140 (263)
T ss_dssp GGCTT--HHHHHHHHHHHEEE---EEEEEEE
T ss_pred hhcCC--HHHHHHHHHHHCCC---CcEEEEE
Confidence 99986 35899999999999 8998887
No 71
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.52 E-value=8.8e-14 Score=115.27 Aligned_cols=126 Identities=12% Similarity=0.071 Sum_probs=89.4
Q ss_pred chHHHHHHHHHHhcch----hhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--
Q 041250 83 SKLNNFFNEAMASDAR----LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-- 155 (259)
Q Consensus 83 ~~~~~~f~~~m~~~~~----~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-- 155 (259)
|+..+.|...+..... ...+.+...++ .....+|||||||+|.++..+++..+ .+++++|+ +.+++.+++
T Consensus 10 ~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~ 86 (243)
T 3bkw_A 10 PDFFAGYSQLGRSIEGLDGAAEWPALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAG 86 (243)
T ss_dssp ---------------CGGGCTTHHHHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTS
T ss_pred HHHHHHHHHhccCCccHHHHHhHHHHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhc
Confidence 4455555555443322 22344555555 45678999999999999999998832 38999999 888988887
Q ss_pred CCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 156 DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 156 ~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
...+++++.+|+.+ +.+ .||+|++.+++|++++ ..++|++++++|+| ||++++...
T Consensus 87 ~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~p---gG~l~~~~~ 145 (243)
T 3bkw_A 87 PDTGITYERADLDKLHLPQDSFDLAYSSLALHYVED--VARLFRTVHQALSP---GGHFVFSTE 145 (243)
T ss_dssp CSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCceEEEcChhhccCCCCCceEEEEeccccccch--HHHHHHHHHHhcCc---CcEEEEEeC
Confidence 33589999999987 554 5999999999999976 45899999999999 899988764
No 72
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.52 E-value=9.9e-14 Score=118.20 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=94.5
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-Cc
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PA 174 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~ 174 (259)
..+++.++ .....+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .|
T Consensus 110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 185 (286)
T 3m70_A 110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185 (286)
T ss_dssp HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence 44555555 446789999999999999999998 569999999 888888876 23399999999988 444 59
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
|+|++..++|+++++....+++++++.|+| ||.++++.....++
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~ 229 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTDD 229 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSS
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCC
Confidence 999999999999988888999999999999 99988877665543
No 73
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=121.62 Aligned_cols=100 Identities=13% Similarity=0.157 Sum_probs=84.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC------C----------------------------
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD------L---------------------------- 157 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~---------------------------- 157 (259)
....+|||||||+|.++..+++.+|..+++++|+ +.+++.|++. .
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 3568999999999999999999999999999999 8888887761 0
Q ss_pred -----------------------------CCeEEEeCCCCCCC--------CCccEEeehhhhccC----ChHHHHHHHH
Q 041250 158 -----------------------------VNLKYVGGDMFKAI--------SPAYAVLLKWILLDW----NDEECVKILK 196 (259)
Q Consensus 158 -----------------------------~ri~~~~~d~~~~~--------~~~D~~~~~~vlh~~----~d~~~~~il~ 196 (259)
.+|+|+.+|+.... ..||+|++..++|++ +++...++|+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 58999999998622 259999999998543 7788899999
Q ss_pred HHHHhcccCCCCcEEEEEe
Q 041250 197 KCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 197 ~~~~~L~p~~~gg~lli~e 215 (259)
+++++|+| ||+|++..
T Consensus 205 ~~~~~Lkp---GG~lil~~ 220 (292)
T 3g07_A 205 RIYRHLRP---GGILVLEP 220 (292)
T ss_dssp HHHHHEEE---EEEEEEEC
T ss_pred HHHHHhCC---CcEEEEec
Confidence 99999999 88877643
No 74
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.51 E-value=3.8e-13 Score=107.24 Aligned_cols=99 Identities=17% Similarity=0.197 Sum_probs=86.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeeh-hhhccCC
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLK-WILLDWN 187 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~-~vlh~~~ 187 (259)
....+|||||||+|.++..+++. +.+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++. .++|+++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 45679999999999999999988 568999999 88898888766789999999988 554 59999998 8999998
Q ss_pred hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 188 DEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 188 d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+++...+|+++.+.|+| ||.+++...
T Consensus 123 ~~~~~~~l~~~~~~l~~---~G~l~~~~~ 148 (195)
T 3cgg_A 123 EDGREPALANIHRALGA---DGRAVIGFG 148 (195)
T ss_dssp HHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCC---CCEEEEEeC
Confidence 88888999999999999 898888654
No 75
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.49 E-value=1e-13 Score=113.11 Aligned_cols=101 Identities=9% Similarity=0.173 Sum_probs=85.9
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCCCC--CccEEeehhhhcc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKAIS--PAYAVLLKWILLD 185 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh~ 185 (259)
.....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++++++.+|+.+..+ .||+|++.+++|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 3456799999999999999999885 48999999 888988887 34589999999998323 5999999999999
Q ss_pred CCh-HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 186 WND-EECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 186 ~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
+++ +...++|+++++.|+| ||.+++..+.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCEEEEEecC
Confidence 986 5567899999999999 8998887653
No 76
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.49 E-value=6.1e-14 Score=114.72 Aligned_cols=143 Identities=12% Similarity=0.084 Sum_probs=101.8
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC-----CC--Cc
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-----IS--PA 174 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-----~~--~~ 174 (259)
.+++.+. .....+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++.+..+|+.+. .+ .|
T Consensus 43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~f 117 (227)
T 3e8s_A 43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDY 117 (227)
T ss_dssp HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCE
T ss_pred HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCc
Confidence 4555555 455689999999999999999988 668999999 8889888855 7788888887651 12 39
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhh------ccCccccC
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMV------LLTGTERD 248 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~------~~~g~~rt 248 (259)
|+|++.+++| +.+ ...+|++++++|+| ||++++.++........+ + ...+....... ......+|
T Consensus 118 D~v~~~~~l~-~~~--~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (227)
T 3e8s_A 118 DLICANFALL-HQD--IIELLSAMRTLLVP---GGALVIQTLHPWSVADGD-Y--QDGWREESFAGFAGDWQPMPWYFRT 188 (227)
T ss_dssp EEEEEESCCC-SSC--CHHHHHHHHHTEEE---EEEEEEEECCTTTTCTTC-C--SCEEEEECCTTSSSCCCCEEEEECC
T ss_pred cEEEECchhh-hhh--HHHHHHHHHHHhCC---CeEEEEEecCccccCccc-c--ccccchhhhhccccCcccceEEEec
Confidence 9999999999 554 34899999999999 999998886543332211 0 00111110100 11234579
Q ss_pred HHHHHHHHhcC
Q 041250 249 EKEWAKIFADS 259 (259)
Q Consensus 249 ~~e~~~ll~~a 259 (259)
.++|.+++++|
T Consensus 189 ~~~~~~~l~~a 199 (227)
T 3e8s_A 189 LASWLNALDMA 199 (227)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999999875
No 77
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.48 E-value=7.6e-14 Score=123.64 Aligned_cols=114 Identities=14% Similarity=0.139 Sum_probs=92.0
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------------C-CCCeEEEeCC
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------------D-LVNLKYVGGD 166 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~-~~ri~~~~~d 166 (259)
..+++.+. +....+|||||||+|.++..++...+..+++++|+ +.+++.|++ . .++|+|+.+|
T Consensus 163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 34555555 67788999999999999999999887767999999 677776653 1 3799999999
Q ss_pred CCC-CC----CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCC
Q 041250 167 MFK-AI----SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKK 223 (259)
Q Consensus 167 ~~~-~~----~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~ 223 (259)
+++ ++ ..+|+|+++.+++ + .+..+.|+++++.|+| ||+|++.|.+.+++..
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKP---GGrIVssE~f~p~d~~ 296 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSSKPFAPLNFR 296 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCT---TCEEEESSCSSCTTCC
T ss_pred ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCC---CcEEEEeecccCCCCC
Confidence 998 54 3599999887764 3 3356778999999999 9999999999887653
No 78
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.48 E-value=1.8e-13 Score=111.26 Aligned_cols=127 Identities=12% Similarity=0.038 Sum_probs=95.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCCh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWND 188 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d 188 (259)
...+|||||||+|.++..+ +. +++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++.+++|++++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 5679999999999999887 45 8999999 88888888755889999999987 554 4999999999999986
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhh---hccCccccCHHHHHHHHh
Q 041250 189 EECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMM---VLLTGTERDEKEWAKIFA 257 (259)
Q Consensus 189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~---~~~~g~~rt~~e~~~ll~ 257 (259)
. .++|++++++|+| ||++++.++... .+ ... ........ .....+.+|.++++++++
T Consensus 111 ~--~~~l~~~~~~L~p---gG~l~i~~~~~~----~~-~~~--~~~~~~~~~~~~~~~~~~~s~~~l~~~l~ 170 (211)
T 2gs9_A 111 V--ERVLLEARRVLRP---GGALVVGVLEAL----SP-WAA--LYRRLGEKGVLPWAQARFLAREDLKALLG 170 (211)
T ss_dssp H--HHHHHHHHHHEEE---EEEEEEEEECTT----SH-HHH--HHHHHHHTTCTTGGGCCCCCHHHHHHHHC
T ss_pred H--HHHHHHHHHHcCC---CCEEEEEecCCc----Cc-HHH--HHHHHhhccCccccccccCCHHHHHHHhc
Confidence 4 5899999999999 899988876321 10 100 01110000 012456689999999874
No 79
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.47 E-value=6e-13 Score=107.75 Aligned_cols=106 Identities=10% Similarity=0.151 Sum_probs=88.7
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCC---C
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI---S 172 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~ 172 (259)
..++..++ .....+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++ ..++++++.+|+.+.. +
T Consensus 30 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 30 AVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp HHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred HHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence 33455555 66778999999999999999999999999999999 888888876 3478999999997732 4
Q ss_pred CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.||++++...++ ...++++++.+.|+| ||++++....
T Consensus 108 ~~D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~~~~ 144 (204)
T 3e05_A 108 DPDRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLNAVT 144 (204)
T ss_dssp CCSEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEEECB
T ss_pred CCCEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEEecc
Confidence 699999988776 345899999999999 9999987654
No 80
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.47 E-value=4e-13 Score=113.43 Aligned_cols=137 Identities=19% Similarity=0.203 Sum_probs=99.5
Q ss_pred CCCCeEEEecCCc--hHHHHHHH-HHCCCCeEEEeec-hHHHhhccc---C--CCCeEEEeCCCCCCC-----C----Cc
Q 041250 113 EGLNSLVDVGGGT--GTAAKAIA-KAFPKLECTCFDL-PHVVNGLES---D--LVNLKYVGGDMFKAI-----S----PA 174 (259)
Q Consensus 113 ~~~~~vlDvGgG~--G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~---~--~~ri~~~~~d~~~~~-----~----~~ 174 (259)
.+..+|||||||+ +.+..+++ +..|+.+++++|. |.|++.|++ . ..+++|+.+|+.++. | .+
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 3567999999997 33445554 4689999999999 999999987 1 347999999998731 1 24
Q ss_pred c-----EEeehhhhccCChHH-HHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccC
Q 041250 175 Y-----AVLLKWILLDWNDEE-CVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERD 248 (259)
Q Consensus 175 D-----~~~~~~vlh~~~d~~-~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt 248 (259)
| .+++..+||+.++++ ...++++++++|+| ||.|++.+...+.... ....+.+.+-........||
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d~~p~-----~~~~~~~~~~~~g~p~~~rs 228 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAEFAPQ-----EVGRVAREYAARNMPMRLRT 228 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCTTSHH-----HHHHHHHHHHHTTCCCCCCC
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCCCCHH-----HHHHHHHHHHhcCCCCccCC
Confidence 4 588889999999876 57899999999999 9999998876542211 11222332222222446789
Q ss_pred HHHHHHHHh
Q 041250 249 EKEWAKIFA 257 (259)
Q Consensus 249 ~~e~~~ll~ 257 (259)
.+|+.++|.
T Consensus 229 ~~ei~~~f~ 237 (277)
T 3giw_A 229 HAEAEEFFE 237 (277)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHhC
Confidence 999999874
No 81
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.47 E-value=3.6e-13 Score=110.35 Aligned_cols=154 Identities=13% Similarity=0.136 Sum_probs=101.4
Q ss_pred HHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCC
Q 041250 88 FFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGD 166 (259)
Q Consensus 88 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d 166 (259)
.|...+..+.......+++.++ .+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++.. .+++.+|
T Consensus 9 ~y~~~~~~~~~~~~~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~--~~~~~~d 81 (230)
T 3cc8_A 9 LYEEKSGHYYNAVNPNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL--DHVVLGD 81 (230)
T ss_dssp -----------CCCHHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS--SEEEESC
T ss_pred hhhccchhHHHHHHHHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC--CcEEEcc
Confidence 3444444443334455665554 45679999999999999999988 4 89999999 88888887533 3788899
Q ss_pred CCC---CCC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhh-hhh---
Q 041250 167 MFK---AIS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFF-EMF--- 237 (259)
Q Consensus 167 ~~~---~~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~-d~~--- 237 (259)
+.+ +.+ .||+|++.+++|++++. ..+++++++.|+| ||.+++..+.... .. ...... ...
T Consensus 82 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~---~~---~~~~~~~~~~~~~ 150 (230)
T 3cc8_A 82 IETMDMPYEEEQFDCVIFGDVLEHLFDP--WAVIEKVKPYIKQ---NGVILASIPNVSH---IS---VLAPLLAGNWTYT 150 (230)
T ss_dssp TTTCCCCSCTTCEEEEEEESCGGGSSCH--HHHHHHTGGGEEE---EEEEEEEEECTTS---HH---HHHHHHTTCCCCB
T ss_pred hhhcCCCCCCCccCEEEECChhhhcCCH--HHHHHHHHHHcCC---CCEEEEEeCCcch---HH---HHHHHhcCCceec
Confidence 875 333 49999999999999875 4899999999999 8999887643211 00 000000 000
Q ss_pred ---hhhccCccccCHHHHHHHHhcC
Q 041250 238 ---MMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 238 ---m~~~~~g~~rt~~e~~~ll~~a 259 (259)
.........++.++|+++++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (230)
T 3cc8_A 151 EYGLLDKTHIRFFTFNEMLRMFLKA 175 (230)
T ss_dssp SSSTTBTTCCCCCCHHHHHHHHHHT
T ss_pred cCCCCCcceEEEecHHHHHHHHHHc
Confidence 0001123568999999999864
No 82
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.47 E-value=8.5e-14 Score=118.87 Aligned_cols=108 Identities=14% Similarity=0.113 Sum_probs=89.4
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC-C
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK-A 170 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~-~ 170 (259)
..+.+.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ...++.+..+|+.+ +
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~ 122 (293)
T 3thr_A 47 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 122 (293)
T ss_dssp HHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence 44455555 4567899999999999999999984 48999999 888888864 13688999999987 4
Q ss_pred ---CC--CccEEeeh-hhhccCCh-----HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 171 ---IS--PAYAVLLK-WILLDWND-----EECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 171 ---~~--~~D~~~~~-~vlh~~~d-----~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
++ .||+|++. +++|++++ ++..++|++++++|+| ||++++..+
T Consensus 123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 176 (293)
T 3thr_A 123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHR 176 (293)
T ss_dssp HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence 34 59999998 89999988 7788999999999999 899887764
No 83
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.46 E-value=3.2e-13 Score=115.57 Aligned_cols=133 Identities=11% Similarity=0.118 Sum_probs=89.9
Q ss_pred CCCeEEEecCCchHHHH----HHHHHCCCCeE--EEeec-hHHHhhccc------CCCCeEE--EeCCCCC-C------C
Q 041250 114 GLNSLVDVGGGTGTAAK----AIAKAFPKLEC--TCFDL-PHVVNGLES------DLVNLKY--VGGDMFK-A------I 171 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~------~~~ri~~--~~~d~~~-~------~ 171 (259)
+..+|||||||+|.++. .++.++|+.++ +++|. +++++.+++ ...++++ ..++..+ + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 34689999999997654 44566788854 99998 889988775 1235554 4555533 2 2
Q ss_pred C--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhcc---Cccc
Q 041250 172 S--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLL---TGTE 246 (259)
Q Consensus 172 ~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~---~g~~ 246 (259)
+ .||+|++++++|+++|. .+.|++++++|+| ||++++.+... + .+ . ...+.-..-... ....
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~--~--~~-~---~~~~~~~~~~~~~~~~~~~ 198 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGT---NAKMLIIVVSG--S--SG-W---DKLWKKYGSRFPQDDLCQY 198 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEEEECT--T--SH-H---HHHHHHHGGGSCCCTTCCC
T ss_pred CCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCC---CcEEEEEEecC--C--cc-H---HHHHHHHHHhccCCCcccC
Confidence 2 49999999999999985 4789999999999 99999986431 1 10 1 111111110001 2346
Q ss_pred cCHHHHHHHHhcC
Q 041250 247 RDEKEWAKIFADS 259 (259)
Q Consensus 247 rt~~e~~~ll~~a 259 (259)
++.++|.++|+++
T Consensus 199 ~~~~~~~~~l~~a 211 (292)
T 2aot_A 199 ITSDDLTQMLDNL 211 (292)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHC
Confidence 7899999998763
No 84
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.46 E-value=2.6e-13 Score=110.17 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=89.8
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC--CccE
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS--PAYA 176 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~--~~D~ 176 (259)
+.+.+...+....+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+
T Consensus 32 ~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 110 (215)
T 2pxx_A 32 FRALLEPELRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDV 110 (215)
T ss_dssp HHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEE
T ss_pred HHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccE
Confidence 33333323456789999999999999999998765 8999999 888888876 23689999999988 554 5999
Q ss_pred EeehhhhccCC-------------hHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 177 VLLKWILLDWN-------------DEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 177 ~~~~~vlh~~~-------------d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
|++..++|... .+...++|+++.++|+| ||++++.++..
T Consensus 111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~ 162 (215)
T 2pxx_A 111 VLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSAA 162 (215)
T ss_dssp EEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred EEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCCC
Confidence 99988887654 44567899999999999 99999988654
No 85
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.45 E-value=1.8e-13 Score=116.21 Aligned_cols=97 Identities=13% Similarity=0.236 Sum_probs=82.0
Q ss_pred CCCeEEEecCCchH----HHHHHHHHCC----CCeEEEeec-hHHHhhcccC----------------------C-----
Q 041250 114 GLNSLVDVGGGTGT----AAKAIAKAFP----KLECTCFDL-PHVVNGLESD----------------------L----- 157 (259)
Q Consensus 114 ~~~~vlDvGgG~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~----------------------~----- 157 (259)
+..+|+|+|||+|. +++.+++..| +.++++.|+ +.+++.|++. .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35789999999999 6666777655 468999999 8999988761 0
Q ss_pred ---------CCeEEEeCCCCC-CCC---CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 158 ---------VNLKYVGGDMFK-AIS---PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 158 ---------~ri~~~~~d~~~-~~~---~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
.+|.|..+|+.+ +++ +||+|++++++++++++...+++++++++|+| ||.|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 379999999998 454 59999999999999998889999999999999 888766
No 86
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.45 E-value=3.6e-13 Score=127.70 Aligned_cols=101 Identities=12% Similarity=0.146 Sum_probs=87.2
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----------CCCCeEEEeCCCCC-CCC--Ccc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----------DLVNLKYVGGDMFK-AIS--PAY 175 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~ri~~~~~d~~~-~~~--~~D 175 (259)
..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ ...+++|+.+|+.+ +.+ .||
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD 798 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD 798 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence 3467899999999999999999998 5679999999 888988865 24689999999988 544 599
Q ss_pred EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+|++..++|++++.....+++++++.|+| | .++|..+
T Consensus 799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTP 835 (950)
T 3htx_A 799 IGTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTP 835 (950)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEEC
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEec
Confidence 99999999999998888999999999999 6 6666554
No 87
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.44 E-value=3.7e-13 Score=106.15 Aligned_cols=104 Identities=14% Similarity=0.194 Sum_probs=84.5
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC--C--
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA--I-- 171 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~--~-- 171 (259)
.+++.+. .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++ ++.+|..+. .
T Consensus 16 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~ 92 (178)
T 3hm2_A 16 LAISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP 92 (178)
T ss_dssp HHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred HHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence 3444555 55677999999999999999999999999999999 888888876 23488 888988763 2
Q ss_pred CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 172 SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 172 ~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
..||+|++...+|+ ..+++++.+.|+| ||++++.+...
T Consensus 93 ~~~D~i~~~~~~~~------~~~l~~~~~~L~~---gG~l~~~~~~~ 130 (178)
T 3hm2_A 93 DNPDVIFIGGGLTA------PGVFAAAWKRLPV---GGRLVANAVTV 130 (178)
T ss_dssp SCCSEEEECC-TTC------TTHHHHHHHTCCT---TCEEEEEECSH
T ss_pred CCCCEEEECCcccH------HHHHHHHHHhcCC---CCEEEEEeecc
Confidence 35999999999987 4689999999999 99998877543
No 88
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.43 E-value=8.4e-13 Score=111.22 Aligned_cols=108 Identities=12% Similarity=0.029 Sum_probs=83.6
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCC---CeEEEeCCC--CCCC-C
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLV---NLKYVGGDM--FKAI-S 172 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~---ri~~~~~d~--~~~~-~ 172 (259)
...+++.++ .....+|||||||+|.++..++++ ..+++++|+ +.+++.+++ ... .+.+...+. .... .
T Consensus 34 ~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~ 109 (261)
T 3iv6_A 34 RENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAG 109 (261)
T ss_dssp HHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTT
T ss_pred HHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCC
Confidence 355666666 677789999999999999999987 468999999 889998887 222 222222232 0111 2
Q ss_pred CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.||+|++..++|+++.++...++++++++| | ||++++.-.
T Consensus 110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~ 149 (261)
T 3iv6_A 110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVK 149 (261)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEE
T ss_pred CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEec
Confidence 599999999999999988899999999999 9 999887654
No 89
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.42 E-value=1.1e-12 Score=109.34 Aligned_cols=98 Identities=19% Similarity=0.319 Sum_probs=82.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-CccEEeeh-hhh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PAYAVLLK-WIL 183 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~~~~~-~vl 183 (259)
..+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++. ..+
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI 116 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCch
Confidence 345679999999999999999987 568999999 888888876 34589999999988 544 59999976 466
Q ss_pred ccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 184 LDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
|+++.++..++|++++++|+| ||.+++.
T Consensus 117 ~~~~~~~~~~~l~~~~~~L~p---gG~li~~ 144 (252)
T 1wzn_A 117 MYFDEEDLRKLFSKVAEALKP---GGVFITD 144 (252)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence 777877888999999999999 8887653
No 90
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.42 E-value=6.9e-13 Score=109.83 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=81.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-CccEEeehh-hhcc
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PAYAVLLKW-ILLD 185 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~~~~~~-vlh~ 185 (259)
...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++.+ ++|+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5679999999999999999988 468999999 888888876 23389999999987 554 599999998 9999
Q ss_pred CCh-HHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 186 WND-EECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 186 ~~d-~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
+++ ++..++|++++++|+| ||.+++
T Consensus 115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~ 140 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKE---GGVFIF 140 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE---EEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEE
Confidence 854 6778999999999999 888776
No 91
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.42 E-value=1.2e-12 Score=107.09 Aligned_cols=125 Identities=11% Similarity=0.067 Sum_probs=93.7
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCChHH
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWNDEE 190 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~~ 190 (259)
..+|||||||+|.++..+++. +++|+ +.+++.+++. +++++.+|+.+ +.+ .||+|++.+++|++++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~- 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP- 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH-
Confidence 679999999999999988665 99999 8888888855 79999999987 554 49999999999999764
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhh--hhccCccccCHHHHHHHHhcC
Q 041250 191 CVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFM--MVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 191 ~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m--~~~~~g~~rt~~e~~~ll~~a 259 (259)
..+|+++.++|+| ||.+++.+.... .+ ... ....... ........++.++|+++++++
T Consensus 119 -~~~l~~~~~~L~p---gG~l~i~~~~~~----~~-~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 178 (219)
T 1vlm_A 119 -ERALKEAYRILKK---GGYLIVGIVDRE----SF-LGR--EYEKNKEKSVFYKNARFFSTEELMDLMRKA 178 (219)
T ss_dssp -HHHHHHHHHHEEE---EEEEEEEEECSS----SH-HHH--HHHHTTTC-CCSTTCCCCCHHHHHHHHHHT
T ss_pred -HHHHHHHHHHcCC---CcEEEEEEeCCc----cH-HHH--HHHHHhcCcchhcccccCCHHHHHHHHHHC
Confidence 5899999999999 899988875321 10 100 1111100 001234668999999999864
No 92
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.40 E-value=1.4e-12 Score=115.69 Aligned_cols=108 Identities=15% Similarity=0.196 Sum_probs=87.8
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----C---CCCeEEEeCCCCCCCC-
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----D---LVNLKYVGGDMFKAIS- 172 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~---~~ri~~~~~d~~~~~~- 172 (259)
.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ . ..+++|+.+|++++.+
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 4566666 44458999999999999999999999999999999 888888876 1 1368999999999655
Q ss_pred -CccEEeehhhhcc---CChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 173 -PAYAVLLKWILLD---WNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 173 -~~D~~~~~~vlh~---~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
.||+|++...+|. .++....++++++.+.|+| ||+++++.
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~ 334 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 334 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEE
Confidence 5999999988885 3455566899999999999 89998864
No 93
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.39 E-value=1.2e-12 Score=108.34 Aligned_cols=95 Identities=21% Similarity=0.281 Sum_probs=81.0
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-CccEEeehh-hhc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PAYAVLLKW-ILL 184 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~~~~~~-vlh 184 (259)
....+|||||||+|.++..+++. .+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++.. ++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN 108 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence 34589999999999999999887 68999999 888888876 34689999999987 454 599999886 888
Q ss_pred cC-ChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 185 DW-NDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 185 ~~-~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
++ +.++..++|++++++|+| ||++++
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~p---gG~l~~ 135 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTD---GGKLLF 135 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCC---CeEEEE
Confidence 88 556778999999999999 888776
No 94
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.39 E-value=5.5e-13 Score=116.87 Aligned_cols=110 Identities=15% Similarity=0.203 Sum_probs=90.7
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCC-Ccc
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS-PAY 175 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~-~~D 175 (259)
..+++.++ .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ...+++++.+|+++..+ .||
T Consensus 186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 45566664 33456899999999999999999999999999999 788888876 34457889999987434 699
Q ss_pred EEeehhhhcc---CChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 176 AVLLKWILLD---WNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 176 ~~~~~~vlh~---~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+|++..++|+ ++.+...+++++++++|+| ||+++++..
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~ 304 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEEEc
Confidence 9999999986 3456678999999999999 999998765
No 95
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.39 E-value=1.5e-12 Score=111.04 Aligned_cols=102 Identities=12% Similarity=0.059 Sum_probs=86.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CC-C--CccEEeeh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AI-S--PAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~-~--~~D~~~~~ 180 (259)
.....+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ...+++++.+|+.+ +. + .||+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 355689999999999999998876 4568999999 888888876 22579999999998 55 3 49999999
Q ss_pred hhhcc--CChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 181 WILLD--WNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 181 ~vlh~--~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.++|+ .+.++..++|++++++|+| ||++++..+.
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~ 176 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPS 176 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence 99998 6677788999999999999 8999887754
No 96
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.39 E-value=3.5e-12 Score=101.49 Aligned_cols=108 Identities=14% Similarity=0.248 Sum_probs=88.1
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCC--CeEEEeCCCCCCCC-
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLV--NLKYVGGDMFKAIS- 172 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~--ri~~~~~d~~~~~~- 172 (259)
..+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ... |++++.+|+.++.+
T Consensus 42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (194)
T 1dus_A 42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence 44555555 556789999999999999999988 679999999 888888776 223 49999999988543
Q ss_pred -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.||+|++...+| +..+....+++++.+.|+| ||++++....
T Consensus 118 ~~~D~v~~~~~~~-~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~ 159 (194)
T 1dus_A 118 RKYNKIITNPPIR-AGKEVLHRIIEEGKELLKD---NGEIWVVIQT 159 (194)
T ss_dssp SCEEEEEECCCST-TCHHHHHHHHHHHHHHEEE---EEEEEEEEES
T ss_pred CCceEEEECCCcc-cchhHHHHHHHHHHHHcCC---CCEEEEEECC
Confidence 599999988877 4455677899999999999 8999888764
No 97
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.37 E-value=1.9e-12 Score=110.40 Aligned_cols=97 Identities=9% Similarity=0.161 Sum_probs=81.2
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCCCccEEeehhhhc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISPAYAVLLKWILL 184 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~~~D~~~~~~vlh 184 (259)
+..+.+|||||||+|.++..++.+.|+.+++++|+ |++++.|++ ..++++|+.+|..+ +..+||+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 56789999999999988877777778999999999 999999887 23899999999987 5346999998654
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.++ ..+++++++++|+| ||+|++.+.
T Consensus 198 -~~d--~~~~l~el~r~LkP---GG~Lvv~~~ 223 (298)
T 3fpf_A 198 -AEP--KRRVFRNIHRYVDT---ETRIIYRTY 223 (298)
T ss_dssp -CSC--HHHHHHHHHHHCCT---TCEEEEEEC
T ss_pred -ccC--HHHHHHHHHHHcCC---CcEEEEEcC
Confidence 233 45899999999999 999998874
No 98
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.36 E-value=4e-12 Score=101.14 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=78.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC--CC-C-CccEEeeh-
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--AI-S-PAYAVLLK- 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~--~~-~-~~D~~~~~- 180 (259)
+....+|||+|||+|.++..++++ ..+++++|+ +.+++.|++ ..++++++..|... +. + .||+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999988 789999999 899988876 33899999977765 13 3 49999876
Q ss_pred hhhccC------ChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 181 WILLDW------NDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 181 ~vlh~~------~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
..++.. ..+....+++++.+.|+| ||++++..+...+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~ 140 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIYYGHD 140 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC----
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEeCCCC
Confidence 333320 235567889999999999 9999988765443
No 99
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.36 E-value=6e-12 Score=108.66 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=86.4
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC------------CCCeEEEeCCCC
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD------------LVNLKYVGGDMF 168 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~~ri~~~~~d~~ 168 (259)
..+++.+........+|||||||+|.++..+++. +..+++++|+ +.+++.+++. ..+++++.+|+.
T Consensus 22 ~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~ 100 (313)
T 3bgv_A 22 GEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSS 100 (313)
T ss_dssp HHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTT
T ss_pred HHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEeccc
Confidence 3344444322245789999999999999999884 5779999999 8888887761 237999999998
Q ss_pred C-C----C--C--CccEEeehhhhccC--ChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 169 K-A----I--S--PAYAVLLKWILLDW--NDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 169 ~-~----~--~--~~D~~~~~~vlh~~--~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+ + + + .||+|++..++|.. +.++...+|++++++|+| ||.+++..+
T Consensus 101 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~ 156 (313)
T 3bgv_A 101 KELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTP 156 (313)
T ss_dssp TSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred ccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecC
Confidence 7 3 3 2 59999999999986 346677999999999999 898888765
No 100
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.35 E-value=4.2e-12 Score=102.32 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=80.0
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--CccEEeehhhhccCCh
Q 041250 117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWND 188 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d 188 (259)
+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++. +++++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~ 107 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPS 107 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCH
Confidence 9999999999999999887 569999999 888888876 23489999999988 554 59999984 344577
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 189 EECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
++...++++++++|+| ||.+++.++..
T Consensus 108 ~~~~~~l~~~~~~L~p---gG~l~~~~~~~ 134 (202)
T 2kw5_A 108 SLRQQLYPKVYQGLKP---GGVFILEGFAP 134 (202)
T ss_dssp HHHHHHHHHHHTTCCS---SEEEEEEEECT
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence 7788999999999999 99999888753
No 101
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.33 E-value=1.8e-12 Score=103.34 Aligned_cols=97 Identities=14% Similarity=0.065 Sum_probs=78.2
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CC--CCeEEEeCCCCC-CCC-CccEEeehhh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DL--VNLKYVGGDMFK-AIS-PAYAVLLKWI 182 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~--~ri~~~~~d~~~-~~~-~~D~~~~~~v 182 (259)
+....+|||+|||+|.++..++...|+.+++++|+ +.+++.+++ .. .++++ .|..+ +.+ .||+++...+
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM 124 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence 46688999999999999999999999999999999 899998887 22 25666 67766 333 4999999999
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
+|.. ++ ....+.++.++|+| ||.++-.+
T Consensus 125 LHlL-~~-~~~al~~v~~~L~p---ggvfISfp 152 (200)
T 3fzg_A 125 LPVL-KQ-QDVNILDFLQLFHT---QNFVISFP 152 (200)
T ss_dssp HHHH-HH-TTCCHHHHHHTCEE---EEEEEEEE
T ss_pred HHhh-hh-hHHHHHHHHHHhCC---CCEEEEeC
Confidence 9999 33 34566699999999 55555444
No 102
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.33 E-value=1.1e-11 Score=101.16 Aligned_cols=98 Identities=18% Similarity=0.251 Sum_probs=79.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC--CccEEeehhh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS--PAYAVLLKWI 182 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~--~~D~~~~~~v 182 (259)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ ..++++++.+|+.+ + ++ .+|+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 457899999999999999999999999999999 888888876 34799999999987 3 44 4999998754
Q ss_pred hccCChH-------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 183 LLDWNDE-------ECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 183 lh~~~d~-------~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
.+ |... ....+++++.++|+| ||.+++..
T Consensus 121 ~~-~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 156 (214)
T 1yzh_A 121 DP-WPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT 156 (214)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred CC-ccccchhhhccCCHHHHHHHHHHcCC---CcEEEEEe
Confidence 32 2211 124799999999999 89887753
No 103
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.32 E-value=7.5e-12 Score=101.90 Aligned_cols=94 Identities=14% Similarity=0.215 Sum_probs=74.1
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEee
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLL 179 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~ 179 (259)
.+++.+.. .....+|||||||+|.++..+. .+++++|+.+. +++++.+|+.+ +.+ .||+|++
T Consensus 57 ~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~---------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 57 RIARDLRQ-RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL---------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp HHHHHHHT-SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS---------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred HHHHHHhc-cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC---------CceEEEeccccCCCCCCCEeEEEE
Confidence 34444431 3456799999999999998873 57999998433 67889999987 554 4999999
Q ss_pred hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.+++| +++ ...+|++++++|+| ||++++.+..
T Consensus 122 ~~~l~-~~~--~~~~l~~~~~~L~~---gG~l~i~~~~ 153 (215)
T 2zfu_A 122 CLSLM-GTN--IRDFLEEANRVLKP---GGLLKVAEVS 153 (215)
T ss_dssp ESCCC-SSC--HHHHHHHHHHHEEE---EEEEEEEECG
T ss_pred ehhcc-ccC--HHHHHHHHHHhCCC---CeEEEEEEcC
Confidence 99998 443 46899999999999 9999998864
No 104
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.32 E-value=3.9e-12 Score=116.16 Aligned_cols=106 Identities=10% Similarity=0.060 Sum_probs=87.5
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC-C
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-P 173 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~ 173 (259)
..+++.+. ..+..+|||||||+|.++..+++ .|..+++++|++++++.|++ ..++|+++.+|+.+ +.+ +
T Consensus 148 ~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 148 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 34555554 45568999999999999998887 57789999999668777765 34799999999998 665 5
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
||+|++..++|++.++.....+.++++.|+| ||.+++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence 9999998888888888788889999999999 888774
No 105
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.32 E-value=1e-12 Score=109.14 Aligned_cols=98 Identities=12% Similarity=0.024 Sum_probs=77.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC---CCC--CccEEee---
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK---AIS--PAYAVLL--- 179 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~---~~~--~~D~~~~--- 179 (259)
....+|||||||+|..+..+++..|. +++++|+ |.+++.|++ ...+++++.+|... +.+ .||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 45679999999999999999988775 8999999 999998886 56788899988754 344 4888764
Q ss_pred --hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 180 --KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 180 --~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
...++++++ ...++++++++|+| ||++++++.
T Consensus 138 ~~~~~~~~~~~--~~~~~~e~~rvLkP---GG~l~f~~~ 171 (236)
T 3orh_A 138 PLSEETWHTHQ--FNFIKNHAFRLLKP---GGVLTYCNL 171 (236)
T ss_dssp CCBGGGTTTHH--HHHHHHTHHHHEEE---EEEEEECCH
T ss_pred ecccchhhhcc--hhhhhhhhhheeCC---CCEEEEEec
Confidence 444555544 45899999999999 999887664
No 106
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.32 E-value=4.4e-12 Score=109.28 Aligned_cols=99 Identities=9% Similarity=0.086 Sum_probs=77.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCC-------CeEEEeCCCCC---------CCC
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLV-------NLKYVGGDMFK---------AIS 172 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~-------ri~~~~~d~~~---------~~~ 172 (259)
...+|||||||+|..+..+++.. ..+++++|+ +.+++.|++ ... +++|...|+.. +.+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 46799999999998777666543 458999999 899999887 111 26788888722 223
Q ss_pred --CccEEeehhhhcc-CChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 173 --PAYAVLLKWILLD-WNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 173 --~~D~~~~~~vlh~-~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.||+|++..++|+ ++.++..++|++++++|+| ||.+++..+
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~ 170 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTM 170 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeC
Confidence 5999999999987 4545567999999999999 899887765
No 107
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.32 E-value=6.7e-12 Score=98.96 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=79.0
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCC--CccEEeehhhhccCChH
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS--PAYAVLLKWILLDWNDE 189 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh~~~d~ 189 (259)
....+|||+|||+|.++..++++. +++++|+ +.+++. ..+++++.+|+.++.+ .||+|+++..+|..++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~----~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES----HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT----CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc----ccCCeEEECChhhhcccCCCCEEEECCCCccCCcc
Confidence 445699999999999999999986 9999999 788877 5689999999998655 59999998888865443
Q ss_pred -------HHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 190 -------ECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 190 -------~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
+...+++++.+.+ | ||++++.+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~ 126 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA 126 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG
T ss_pred ccccCCcchHHHHHHHHhhC-C---CCEEEEEEecC
Confidence 3457889999988 8 89999988543
No 108
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.31 E-value=7.2e-12 Score=100.62 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=84.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-C-CC--CccEEee
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A-IS--PAYAVLL 179 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~-~~--~~D~~~~ 179 (259)
.....+|||+|||+|.++..+++++ |..+++++|+ +.+++.+++ ..++++++.+|+.+ + .. .||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4556799999999999999999986 7789999999 888888876 14789999999876 2 32 5999998
Q ss_pred hhhhc-------cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 180 KWILL-------DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 180 ~~vlh-------~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
...+. ....+...++++++.+.|+| ||++++..+....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~~~ 144 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYYGGD 144 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECCBTT
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEccCCC
Confidence 76541 11233456799999999999 9999988765443
No 109
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.31 E-value=3.8e-12 Score=104.01 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=77.8
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhh----ccc-----CCCCeEEEeCCCCC-CC
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNG----LES-----DLVNLKYVGGDMFK-AI 171 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~-----~~~ri~~~~~d~~~-~~ 171 (259)
..++.+. .....+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ ..++++++.+|+.+ +.
T Consensus 18 ~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~ 95 (218)
T 3mq2_A 18 AEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPP 95 (218)
T ss_dssp HHHHHHH--TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCS
T ss_pred HHHHHhh--ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCC
Confidence 3444445 56678999999999999999999999999999999 776654 222 34589999999988 55
Q ss_pred C-CccEEeeh---hhhc--cCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 172 S-PAYAVLLK---WILL--DWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 172 ~-~~D~~~~~---~vlh--~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
+ +.|.+.+. ..+| +.++. ..+|++++++|+| ||++++.-
T Consensus 96 ~~~~d~v~~~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~ 140 (218)
T 3mq2_A 96 LSGVGELHVLMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVAL 140 (218)
T ss_dssp CCCEEEEEEESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEEE
T ss_pred CCCCCEEEEEccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEEe
Confidence 4 22555422 2221 33332 5789999999999 89888843
No 110
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.31 E-value=1.5e-11 Score=99.90 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=80.1
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----C-CCCeEEEeCCCCCC---CCC
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----D-LVNLKYVGGDMFKA---ISP 173 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~~ri~~~~~d~~~~---~~~ 173 (259)
++..++ .....+|||+|||+|.++..+++. ..+++++|+ +.+++.|++ . .++++++.+|+.+. .+.
T Consensus 47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 444555 566789999999999999999998 779999999 889988876 2 34899999999882 336
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
||++++...+ + .. +++++.+.|+| ||++++...
T Consensus 123 ~D~v~~~~~~----~--~~-~l~~~~~~Lkp---gG~lv~~~~ 155 (204)
T 3njr_A 123 PEAVFIGGGG----S--QA-LYDRLWEWLAP---GTRIVANAV 155 (204)
T ss_dssp CSEEEECSCC----C--HH-HHHHHHHHSCT---TCEEEEEEC
T ss_pred CCEEEECCcc----c--HH-HHHHHHHhcCC---CcEEEEEec
Confidence 9999987643 1 23 89999999999 899887665
No 111
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.31 E-value=3.8e-12 Score=106.48 Aligned_cols=104 Identities=12% Similarity=0.145 Sum_probs=85.8
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC-
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS- 172 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~- 172 (259)
..++..++ .....+|||+|||+|.++..+++. .|..+++++|+ +.+++.|++ ..++++++.+|+.++++
T Consensus 83 ~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 83 ALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 34555556 667789999999999999999999 88999999999 888888876 34679999999998655
Q ss_pred -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.||+|++ +.++. ..+++++.++|+| ||++++..+.
T Consensus 161 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~ 196 (255)
T 3mb5_A 161 ENVDHVIL-----DLPQP--ERVVEHAAKALKP---GGFFVAYTPC 196 (255)
T ss_dssp CSEEEEEE-----CSSCG--GGGHHHHHHHEEE---EEEEEEEESS
T ss_pred CCcCEEEE-----CCCCH--HHHHHHHHHHcCC---CCEEEEEECC
Confidence 4999987 34443 4689999999999 9999887653
No 112
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.31 E-value=8.5e-12 Score=101.99 Aligned_cols=98 Identities=20% Similarity=0.288 Sum_probs=77.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC--CccEEeehhh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS--PAYAVLLKWI 182 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~--~~D~~~~~~v 182 (259)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ ..++++++.+|+.+ + ++ .+|.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457899999999999999999999999999999 888888776 34689999999987 3 43 4898876533
Q ss_pred hccCChH-------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 183 LLDWNDE-------ECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 183 lh~~~d~-------~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
.. |+.. ....+++++++.|+| ||.|++..
T Consensus 118 ~p-~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t 153 (213)
T 2fca_A 118 DP-WPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 153 (213)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred CC-CcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence 21 2211 024789999999999 89888764
No 113
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.31 E-value=1e-11 Score=111.47 Aligned_cols=110 Identities=16% Similarity=0.239 Sum_probs=86.3
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhc-------cc-----C--CCCeEEEeCCCC
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGL-------ES-----D--LVNLKYVGGDMF 168 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~-----~--~~ri~~~~~d~~ 168 (259)
+++.+. .....+|||||||+|.++..+++.+|..+++++|+ +.+++.| ++ . ..+++++.+|.+
T Consensus 234 ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~ 311 (433)
T 1u2z_A 234 VYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 311 (433)
T ss_dssp HHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence 444444 56678999999999999999999988779999999 7777766 44 2 479999988554
Q ss_pred -CC------CCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 169 -KA------ISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 169 -~~------~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
.+ ...||+|++.++++ . ++....|+++.+.|+| ||+|++.+.+.+..
T Consensus 312 ~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKp---GG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 312 VDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKV---GCKIISLKSLRSLT 365 (433)
T ss_dssp TTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred ccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCC---CeEEEEeeccCCcc
Confidence 32 23599999887773 2 3455788999999999 99999998877765
No 114
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.30 E-value=5e-12 Score=111.03 Aligned_cols=107 Identities=11% Similarity=0.074 Sum_probs=87.0
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC-C
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-P 173 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~ 173 (259)
..+.+.+. ..+..+|||||||+|.++..+++. +..+++++|..++++.+++ ..++++++.+|+.+ +.+ +
T Consensus 40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 116 (348)
T 2y1w_A 40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 116 (348)
T ss_dssp HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence 44555555 456789999999999999998886 5669999999667777665 34799999999988 555 5
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
+|+|++..++|++..+.....+.++++.|+| ||.+++.
T Consensus 117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~ 154 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT 154 (348)
T ss_dssp EEEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESC
T ss_pred eeEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEe
Confidence 9999999888888877777888999999999 8888744
No 115
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.30 E-value=6e-12 Score=105.74 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=78.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCCh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWND 188 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d 188 (259)
....+|||||||+|.++..+++. +.+++++|+ +.+++.+++.... .++.+|+.+ +.+ .||+|++..+++++.+
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~ 129 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 129 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhccc
Confidence 35679999999999999999987 568999999 8899888872222 288899987 554 4999999876655533
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 189 EECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
+ ...+|++++++|+| ||++++..+.
T Consensus 130 ~-~~~~l~~~~~~Lkp---gG~l~~~~~~ 154 (260)
T 2avn_A 130 N-KDKAFSEIRRVLVP---DGLLIATVDN 154 (260)
T ss_dssp C-HHHHHHHHHHHEEE---EEEEEEEEEB
T ss_pred c-HHHHHHHHHHHcCC---CeEEEEEeCC
Confidence 3 67899999999999 8998887653
No 116
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.30 E-value=2.1e-12 Score=106.95 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=80.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC---CCC--CccEEee-hh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK---AIS--PAYAVLL-KW 181 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~---~~~--~~D~~~~-~~ 181 (259)
....+|||||||+|.++..+++..+ .+++++|+ +.+++.|++ ...+++++.+|+.+ +++ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4567999999999999999966544 38999999 889888876 34789999999876 344 4999988 55
Q ss_pred h--hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 182 I--LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 182 v--lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
. .+++.......++++++++|+| ||++++++..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEecC
Confidence 4 4455555566889999999999 9999988764
No 117
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.30 E-value=9.3e-12 Score=105.63 Aligned_cols=104 Identities=19% Similarity=0.156 Sum_probs=82.2
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc---C---CCCeEEEeCCCCCCCC-
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES---D---LVNLKYVGGDMFKAIS- 172 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---~---~~ri~~~~~d~~~~~~- 172 (259)
..++..++ ..+..+|||+|||+|.++..+++. +|..+++++|+ +.+++.+++ . .++++++.+|+.++.+
T Consensus 100 ~~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 177 (275)
T 1yb2_A 100 SYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD 177 (275)
T ss_dssp ------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred HHHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcC
Confidence 34555555 667789999999999999999998 78999999999 888888876 2 2689999999988655
Q ss_pred -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.||+|++ ++++. .++|+++.+.|+| ||++++....
T Consensus 178 ~~fD~Vi~-----~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~ 213 (275)
T 1yb2_A 178 QMYDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFYLPN 213 (275)
T ss_dssp CCEEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEEESS
T ss_pred CCccEEEE-----cCcCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence 4999997 34443 3789999999999 8999988753
No 118
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.30 E-value=5.6e-12 Score=101.97 Aligned_cols=99 Identities=12% Similarity=0.165 Sum_probs=81.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC-CccEEeehhhhc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-PAYAVLLKWILL 184 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh 184 (259)
.....+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ ...+++++.+|+.+..+ .||+|++...+|
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence 34567999999999999999776 56779999999 888888876 23349999999988444 699999987776
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
+ ...+++++.+.|+| ||++++.+....
T Consensus 137 ~-----~~~~l~~~~~~L~~---gG~l~~~~~~~~ 163 (205)
T 3grz_A 137 I-----LLDLIPQLDSHLNE---DGQVIFSGIDYL 163 (205)
T ss_dssp H-----HHHHGGGSGGGEEE---EEEEEEEEEEGG
T ss_pred H-----HHHHHHHHHHhcCC---CCEEEEEecCcc
Confidence 4 46789999999999 899988776543
No 119
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.30 E-value=1.5e-11 Score=101.60 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=77.8
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCC-----CC-CccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA-----IS-PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~-----~~-~~D~~~~~~ 181 (259)
+.+..+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++.++.+|+.++ .+ .||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 55678999999999999999999988889999999 888877655 337899999999762 22 589988
Q ss_pred hhccCCh-HHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 182 ILLDWND-EECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 182 vlh~~~d-~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
|+.++ +....+++++.+.|+| ||++++.
T Consensus 149 --~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~ 177 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKK---GGYGMIA 177 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred --EecCChhHHHHHHHHHHHhCCC---CcEEEEE
Confidence 55554 3446779999999999 8998887
No 120
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.30 E-value=9.9e-12 Score=111.48 Aligned_cols=139 Identities=10% Similarity=0.044 Sum_probs=96.9
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC------CC--
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK------AI-- 171 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~------~~-- 171 (259)
...+++.+. .....+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+......+.. +.
T Consensus 96 ~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~ 169 (416)
T 4e2x_A 96 ARDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK--GIRVRTDFFEKATADDVRRTE 169 (416)
T ss_dssp HHHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT--TCCEECSCCSHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc--CCCcceeeechhhHhhcccCC
Confidence 355666666 666789999999999999999987 458999999 8888888853 23333222221 12
Q ss_pred CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCchhhhhhhhhhhhhhhccCccccCHHH
Q 041250 172 SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYKSIETQLFFEMFMMVLLTGTERDEKE 251 (259)
Q Consensus 172 ~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~g~~rt~~e 251 (259)
..||+|++.+++|++++ ...+|++++++|+| ||++++..+..... .. ...++. ....+...++.++
T Consensus 170 ~~fD~I~~~~vl~h~~d--~~~~l~~~~r~Lkp---gG~l~i~~~~~~~~------~~-~~~~~~--~~~~~~~~~s~~~ 235 (416)
T 4e2x_A 170 GPANVIYAANTLCHIPY--VQSVLEGVDALLAP---DGVFVFEDPYLGDI------VA-KTSFDQ--IFDEHFFLFSATS 235 (416)
T ss_dssp CCEEEEEEESCGGGCTT--HHHHHHHHHHHEEE---EEEEEEEEECHHHH------HH-HTCGGG--CSTTCCEECCHHH
T ss_pred CCEEEEEECChHHhcCC--HHHHHHHHHHHcCC---CeEEEEEeCChHHh------hh-hcchhh--hhhhhhhcCCHHH
Confidence 25999999999999986 46899999999999 89888865432110 00 001111 1123445688999
Q ss_pred HHHHHhcC
Q 041250 252 WAKIFADS 259 (259)
Q Consensus 252 ~~~ll~~a 259 (259)
|+++++++
T Consensus 236 l~~ll~~a 243 (416)
T 4e2x_A 236 VQGMAQRC 243 (416)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99998764
No 121
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.29 E-value=4.2e-12 Score=104.33 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=77.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC----CC--CccEEeehh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA----IS--PAYAVLLKW 181 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~----~~--~~D~~~~~~ 181 (259)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ ...+++++.+|..+. ++ .+|.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 467899999999999999999999999999999 888887765 356899999998762 44 489888764
Q ss_pred hhccCChHHH-------HHHHHHHHHhcccCCCCcEEEEEe
Q 041250 182 ILLDWNDEEC-------VKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 182 vlh~~~d~~~-------~~il~~~~~~L~p~~~gg~lli~e 215 (259)
... |+.... ..++++++++|+| ||.+++..
T Consensus 114 ~~p-~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t 150 (218)
T 3dxy_A 114 PDP-WHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT 150 (218)
T ss_dssp CCC-CCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCC-ccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence 332 332211 2489999999999 89887765
No 122
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.29 E-value=7.7e-13 Score=107.21 Aligned_cols=101 Identities=18% Similarity=0.171 Sum_probs=67.0
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC----CCCeEEEeCCCCCC--C-----CCccEEeeh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD----LVNLKYVGGDMFKA--I-----SPAYAVLLK 180 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~ri~~~~~d~~~~--~-----~~~D~~~~~ 180 (259)
.+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. ..+++++.+|+.++ . ..||+|++.
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 5678999999999999999999999999999999 8899888872 12789999999873 2 359999995
Q ss_pred hhh------ccCChHHH------------------HHHHHHHHHhcccCCCCcEEEEEee
Q 041250 181 WIL------LDWNDEEC------------------VKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 181 ~vl------h~~~d~~~------------------~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
..+ +.++++.. .++++++++.|+| ||++++++.
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 165 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEV 165 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEEC
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEE
Confidence 433 33333222 6789999999999 999666665
No 123
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.29 E-value=1.8e-11 Score=103.92 Aligned_cols=98 Identities=20% Similarity=0.272 Sum_probs=80.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC--CccEEeehh----
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--PAYAVLLKW---- 181 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~D~~~~~~---- 181 (259)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++++.+|++++.+ .||+|+++.
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~~ 188 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYID 188 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCCC
Confidence 457999999999999999999999999999999 888888876 33589999999998543 599999873
Q ss_pred ---------hhccCCh----------HHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 182 ---------ILLDWND----------EECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 182 ---------vlh~~~d----------~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
++++.|. +...++++++.+.|+| ||.+++.
T Consensus 189 ~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~ 237 (276)
T 2b3t_A 189 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLE 237 (276)
T ss_dssp TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEE
T ss_pred ccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 4443332 3457899999999999 8887765
No 124
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.29 E-value=5.6e-12 Score=104.03 Aligned_cols=101 Identities=14% Similarity=0.069 Sum_probs=73.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec--hHHHhhc---cc-----CCCCeEEEeCCCCC-CCCCccEEeehh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL--PHVVNGL---ES-----DLVNLKYVGGDMFK-AISPAYAVLLKW 181 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a---~~-----~~~ri~~~~~d~~~-~~~~~D~~~~~~ 181 (259)
....+|||||||+|.++..+++++|+.+++++|+ +.+++.| ++ ...+++|+.+|..+ +...+|.+....
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 4567899999999999999999999999999999 3454444 44 34689999999976 322235554444
Q ss_pred hhccCChHH------HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 182 ILLDWNDEE------CVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 182 vlh~~~d~~------~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+.+.|+... ...+|++++++|+| ||+++++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~~ 140 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVTT 140 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEEC
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEEe
Confidence 443343311 13589999999999 999988443
No 125
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.29 E-value=1.7e-11 Score=100.04 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=74.4
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHH----hhcccCCCCeEEEeCCCCCC-----CC-CccEEeeh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVV----NGLESDLVNLKYVGGDMFKA-----IS-PAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~----~~a~~~~~ri~~~~~d~~~~-----~~-~~D~~~~~ 180 (259)
+.+..+|||||||+|.++..+++..|+.+++++|+ +.++ +.++ ...++.++.+|...+ .+ .||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~-~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR-ERNNIIPLLFDASKPWKYSGIVEKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHH-HCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHh-cCCCeEEEEcCCCCchhhcccccceeEEEEe
Confidence 45667999999999999999999988779999999 6544 3344 346899999998763 22 59999876
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
+.+ .++...+++++++.|+| ||++++.-
T Consensus 134 -~~~---~~~~~~~l~~~~r~Lkp---gG~l~i~~ 161 (210)
T 1nt2_A 134 -IAQ---KNQIEILKANAEFFLKE---KGEVVIMV 161 (210)
T ss_dssp -CCS---TTHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred -ccC---hhHHHHHHHHHHHHhCC---CCEEEEEE
Confidence 222 23445669999999999 99998884
No 126
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.28 E-value=2.1e-11 Score=98.84 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=81.6
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC---C
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---P 173 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~---~ 173 (259)
.+++.++ ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ...+++++.+|..+..+ .
T Consensus 68 ~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (210)
T 3lbf_A 68 RMTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP 143 (210)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence 3444555 566789999999999999999998 678999999 888888876 34689999999988332 5
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
||+|++..++|++++ ++.+.|+| ||++++.-.
T Consensus 144 ~D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~ 175 (210)
T 3lbf_A 144 FDAIIVTAAPPEIPT--------ALMTQLDE---GGILVLPVG 175 (210)
T ss_dssp EEEEEESSBCSSCCT--------HHHHTEEE---EEEEEEEEC
T ss_pred ccEEEEccchhhhhH--------HHHHhccc---CcEEEEEEc
Confidence 999999999998886 47889999 898888654
No 127
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.27 E-value=9.3e-12 Score=104.02 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=81.6
Q ss_pred CCCeEEEecCCchHHHHHHHHH--CCCCeEEEeec-hHHHhhccc---CC------CC----------------------
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKA--FPKLECTCFDL-PHVVNGLES---DL------VN---------------------- 159 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~---~~------~r---------------------- 159 (259)
...+|||+|||+|.++..+++. +|..+++++|+ +.+++.|++ .. .+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4579999999999999999998 78889999999 899988885 22 12
Q ss_pred ---eE-------------EEeCCCCCCC------C--CccEEeehhhhccCCh-------HHHHHHHHHHHHhcccCCCC
Q 041250 160 ---LK-------------YVGGDMFKAI------S--PAYAVLLKWILLDWND-------EECVKILKKCKEAITRDGKK 208 (259)
Q Consensus 160 ---i~-------------~~~~d~~~~~------~--~~D~~~~~~vlh~~~d-------~~~~~il~~~~~~L~p~~~g 208 (259)
++ |+.+|++++. + .||+|+++..++...+ +....+++++++.|+| |
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---g 207 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA---H 207 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---T
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---C
Confidence 77 9999999843 3 5999999876655432 5667899999999999 9
Q ss_pred cEEEEEee
Q 041250 209 RKVIIKDM 216 (259)
Q Consensus 209 g~lli~e~ 216 (259)
|+++++..
T Consensus 208 G~l~~~~~ 215 (250)
T 1o9g_A 208 AVIAVTDR 215 (250)
T ss_dssp CEEEEEES
T ss_pred cEEEEeCc
Confidence 99988544
No 128
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.27 E-value=1e-11 Score=100.43 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=76.6
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC--CccEEeehhhhccC
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--PAYAVLLKWILLDW 186 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh~~ 186 (259)
..+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ...+++++.+|+.+..+ .||+|++..+ +
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~-- 142 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A-- 142 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S--
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C--
Confidence 57999999999999999999999999999999 888888776 33469999999988433 5999987542 2
Q ss_pred ChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 187 NDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 187 ~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
+ ...+++++.+.|+| ||.+++..
T Consensus 143 -~--~~~~l~~~~~~L~~---gG~l~~~~ 165 (207)
T 1jsx_A 143 -S--LNDMVSWCHHLPGE---QGRFYALK 165 (207)
T ss_dssp -S--HHHHHHHHTTSEEE---EEEEEEEE
T ss_pred -C--HHHHHHHHHHhcCC---CcEEEEEe
Confidence 2 35899999999999 89888764
No 129
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.27 E-value=3.9e-11 Score=95.88 Aligned_cols=100 Identities=11% Similarity=0.020 Sum_probs=80.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--C--CCccEEeehh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--I--SPAYAVLLKW 181 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~--~~~D~~~~~~ 181 (259)
....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..++++++.+|+.+ . . ..||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 34679999999999999988774 5568999999 899988886 33789999999987 2 2 2599999987
Q ss_pred hhccCChHHHHHHHHHHHH--hcccCCCCcEEEEEeee
Q 041250 182 ILLDWNDEECVKILKKCKE--AITRDGKKRKVIIKDMI 217 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~--~L~p~~~gg~lli~e~~ 217 (259)
.+|. ..++..++++++.+ .|+| ||.+++....
T Consensus 122 p~~~-~~~~~~~~l~~~~~~~~L~p---gG~l~~~~~~ 155 (189)
T 3p9n_A 122 PYNV-DSADVDAILAALGTNGWTRE---GTVAVVERAT 155 (189)
T ss_dssp CTTS-CHHHHHHHHHHHHHSSSCCT---TCEEEEEEET
T ss_pred CCCc-chhhHHHHHHHHHhcCccCC---CeEEEEEecC
Confidence 7664 34556789999999 9999 8988876554
No 130
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.26 E-value=2.5e-11 Score=98.76 Aligned_cols=100 Identities=13% Similarity=0.097 Sum_probs=82.1
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC---C
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---P 173 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~---~ 173 (259)
+++.+. .....+|||||||+|.++..+++.. |+.+++++|. +.+++.+++ ..++++++.+|+..+.+ .
T Consensus 69 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 69 MCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 444444 5567899999999999999999987 7789999999 888888876 34679999999976443 5
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
||+|++..++|++++ ++.+.|+| ||++++...
T Consensus 147 fD~v~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~ 178 (215)
T 2yxe_A 147 YDRIYTTAAGPKIPE--------PLIRQLKD---GGKLLMPVG 178 (215)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEES
T ss_pred eeEEEECCchHHHHH--------HHHHHcCC---CcEEEEEEC
Confidence 999999999998873 67889999 898888754
No 131
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.26 E-value=9.4e-12 Score=102.97 Aligned_cols=100 Identities=8% Similarity=0.197 Sum_probs=81.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC-----CCccEEee
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI-----SPAYAVLL 179 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~-----~~~D~~~~ 179 (259)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++ ..++++++.+|+.+.. ..||+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 45678999999999999999999889999999999 888988876 3469999999998732 25999986
Q ss_pred hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
... .+....+++++.+.|+| ||.|++.+...+
T Consensus 149 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d~~~~~ 180 (232)
T 3ntv_A 149 DAA-----KAQSKKFFEIYTPLLKH---QGLVITDNVLYH 180 (232)
T ss_dssp ETT-----SSSHHHHHHHHGGGEEE---EEEEEEECTTGG
T ss_pred cCc-----HHHHHHHHHHHHHhcCC---CeEEEEeeCCcC
Confidence 532 23356799999999999 888877555443
No 132
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.26 E-value=1e-11 Score=103.81 Aligned_cols=100 Identities=8% Similarity=0.128 Sum_probs=81.6
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C-CC---CccEE
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-IS---PAYAV 177 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~~---~~D~~ 177 (259)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.|++ ..++|+++.+|..+ + .+ .||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 45678999999999999999999998 889999999 888888876 34689999999876 2 21 59999
Q ss_pred eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
++.. +......+++++.+.|+| ||.|++.+....
T Consensus 141 ~~d~-----~~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~~ 174 (248)
T 3tfw_A 141 FIDA-----DKPNNPHYLRWALRYSRP---GTLIIGDNVVRD 174 (248)
T ss_dssp EECS-----CGGGHHHHHHHHHHTCCT---TCEEEEECCSGG
T ss_pred EECC-----chHHHHHHHHHHHHhcCC---CeEEEEeCCCcC
Confidence 8854 334456799999999999 898877776554
No 133
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.25 E-value=2.2e-11 Score=101.14 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=78.7
Q ss_pred CCCeEEEecCCchHHHHHHHHH----CCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC--C---C--CccEEeehh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKA----FPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA--I---S--PAYAVLLKW 181 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~---~--~~D~~~~~~ 181 (259)
+..+|||||||+|..+..+++. +|+.+++++|+ +.+++.|+...++|+++.+|..+. + . .||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999998 78999999999 888888875568999999999873 2 2 499988765
Q ss_pred hhccCChHHHHHHHHHHHH-hcccCCCCcEEEEEee
Q 041250 182 ILLDWNDEECVKILKKCKE-AITRDGKKRKVIIKDM 216 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~-~L~p~~~gg~lli~e~ 216 (259)
. |. +...+|+++.+ .|+| ||++++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~Lkp---GG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEE---GDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCT---TCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCC---CCEEEEEeC
Confidence 4 42 34578999997 9999 999888765
No 134
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.24 E-value=2.9e-12 Score=107.41 Aligned_cols=100 Identities=15% Similarity=0.070 Sum_probs=80.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCC-------------------------------
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLV------------------------------- 158 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~------------------------------- 158 (259)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ...
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 3457899999999999999988765 58999999 888888866 111
Q ss_pred -Ce-EEEeCCCCCC-C------CCccEEeehhhhccCCh--HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 159 -NL-KYVGGDMFKA-I------SPAYAVLLKWILLDWND--EECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 159 -ri-~~~~~d~~~~-~------~~~D~~~~~~vlh~~~d--~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
++ +++.+|+.+. . ..||+|++..++|+.++ ++...+|++++++|+| ||++++.+.
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~ 199 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDA 199 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEec
Confidence 28 9999999872 1 24999999999995433 3567899999999999 999998884
No 135
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.24 E-value=2.5e-11 Score=102.25 Aligned_cols=101 Identities=13% Similarity=0.158 Sum_probs=78.8
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---C------CCCeEEEeCCCCCC--------CC-
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---D------LVNLKYVGGDMFKA--------IS- 172 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~------~~ri~~~~~d~~~~--------~~- 172 (259)
.....+|||+|||+|.++..+++++|+.+++++|+ +.+++.|++ . .+|++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 44567999999999999999999999999999999 888888876 1 13699999999874 22
Q ss_pred -CccEEeehhhhcc----------------CChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 173 -PAYAVLLKWILLD----------------WNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 173 -~~D~~~~~~vlh~----------------~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
.||+|++...++. ........+++.+.+.|+| ||+++++-
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEEE
Confidence 5999999733322 1222256789999999999 89987753
No 136
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.24 E-value=9.1e-12 Score=103.51 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=78.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CC-----CCccEEeeh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI-----SPAYAVLLK 180 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~-----~~~D~~~~~ 180 (259)
.+..+|||||||+|.++..+++..|+.+++++|+ +.+++.+++ ...+++++.+|+.+ +. ..||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4568999999999999999999999999999999 888888776 34579999999876 42 259999987
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
.+ .+ ...+++.+.+.|+| ||++++..
T Consensus 149 ~~----~~--~~~~l~~~~~~Lkp---gG~l~~~~ 174 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKK---NGLFVALK 174 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred cc----CC--HHHHHHHHHHhcCC---CCEEEEEe
Confidence 63 22 45899999999999 89988864
No 137
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.24 E-value=2.5e-11 Score=99.82 Aligned_cols=96 Identities=8% Similarity=0.041 Sum_probs=80.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC---CccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS---PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~---~~D~~~~~~ 181 (259)
.++..+|+|||||+|.+++.+++..|..+++++|+ |.+++.|++ ..++|++..+|.+++++ .||+|++..
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 34567999999999999999999999999999999 888888886 45689999999998655 499998765
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
+ ..+....||....+.|+| +|++++.
T Consensus 93 ~----Gg~~i~~Il~~~~~~L~~---~~~lVlq 118 (225)
T 3kr9_A 93 M----GGRLIARILEEGLGKLAN---VERLILQ 118 (225)
T ss_dssp E----CHHHHHHHHHHTGGGCTT---CCEEEEE
T ss_pred C----ChHHHHHHHHHHHHHhCC---CCEEEEE
Confidence 3 334467899999999998 7876663
No 138
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.24 E-value=1.7e-11 Score=107.71 Aligned_cols=97 Identities=12% Similarity=0.126 Sum_probs=78.2
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWI 182 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~v 182 (259)
..+..+|||||||+|.++..++++ +..+++++|++++++.|++ ..++++++.+|+.+ +.| .||+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 345689999999999999999988 6669999999778887776 45679999999998 665 5999998765
Q ss_pred hccC-ChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250 183 LLDW-NDEECVKILKKCKEAITRDGKKRKVI 212 (259)
Q Consensus 183 lh~~-~d~~~~~il~~~~~~L~p~~~gg~ll 212 (259)
.|.+ ..+....+++++.+.|+| ||.++
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~Lkp---gG~li 170 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAP---DGLIF 170 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred cccccCchhHHHHHHHHHHhCCC---CCEEc
Confidence 5443 223355789999999999 88876
No 139
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.24 E-value=1.9e-11 Score=100.11 Aligned_cols=100 Identities=10% Similarity=0.114 Sum_probs=81.3
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---C-----CCcc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I-----SPAY 175 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~-----~~~D 175 (259)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ ..++++++.+|..+. . ..||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 45678999999999999999999998 789999999 888888776 346899999999762 1 3499
Q ss_pred EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
+|++... ......+++++.+.|+| ||.+++.+...+
T Consensus 136 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDAD-----KQNNPAYFEWALKLSRP---GTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTCCT---TCEEEEESCSGG
T ss_pred EEEEcCC-----cHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 9987644 23346899999999999 898777766554
No 140
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.23 E-value=4.1e-11 Score=102.28 Aligned_cols=95 Identities=16% Similarity=0.189 Sum_probs=75.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC-Cc---cEEeeh--
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS-PA---YAVLLK-- 180 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~-~~---D~~~~~-- 180 (259)
...+|||+|||+|.++..+++. |+.+++++|+ +.+++.|++ ...|++|+.+|++++.+ .| |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4569999999999999999999 9999999999 899988876 33579999999998554 58 999986
Q ss_pred ----------hhhccCChH------HHHHHHHHHH-HhcccCCCCcEEEE
Q 041250 181 ----------WILLDWNDE------ECVKILKKCK-EAITRDGKKRKVII 213 (259)
Q Consensus 181 ----------~vlh~~~d~------~~~~il~~~~-~~L~p~~~gg~lli 213 (259)
.+. +.+.. +...+++++. +.++| ||.+++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence 222 22221 1237899999 99999 888775
No 141
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.23 E-value=1.3e-11 Score=103.34 Aligned_cols=95 Identities=15% Similarity=0.097 Sum_probs=79.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CC-----CCccEEeeh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI-----SPAYAVLLK 180 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~-----~~~D~~~~~ 180 (259)
....+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ...+|+++.+|+.+ +. ..||+|+++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4567999999999999999999999999999998 888888876 34579999999876 32 259999987
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.+- + ...+++.+.+.|+| ||++++...
T Consensus 159 a~~----~--~~~ll~~~~~~Lkp---gG~l~~~~g 185 (249)
T 3g89_A 159 AVA----P--LCVLSELLLPFLEV---GGAAVAMKG 185 (249)
T ss_dssp SSC----C--HHHHHHHHGGGEEE---EEEEEEEEC
T ss_pred CcC----C--HHHHHHHHHHHcCC---CeEEEEEeC
Confidence 542 2 34789999999999 999888764
No 142
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.23 E-value=2.9e-11 Score=95.32 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=80.6
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC--C
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS--P 173 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~ 173 (259)
..+++.++ ..+..+|||+|||+|.++..+++ +..+++++|+ +.+++.+++ ..++++++.+|+.++.+ .
T Consensus 25 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 100 (183)
T 2yxd_A 25 AVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLE 100 (183)
T ss_dssp HHHHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCC
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCC
Confidence 34445555 55678999999999999999998 7889999999 888888876 23689999999987544 5
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
||+|++..+ .....+++++++. | ||.+++...
T Consensus 101 ~D~i~~~~~------~~~~~~l~~~~~~--~---gG~l~~~~~ 132 (183)
T 2yxd_A 101 FNKAFIGGT------KNIEKIIEILDKK--K---INHIVANTI 132 (183)
T ss_dssp CSEEEECSC------SCHHHHHHHHHHT--T---CCEEEEEES
T ss_pred CcEEEECCc------ccHHHHHHHHhhC--C---CCEEEEEec
Confidence 999999887 2245789999888 7 899988874
No 143
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.23 E-value=2.2e-11 Score=105.04 Aligned_cols=99 Identities=13% Similarity=0.180 Sum_probs=79.7
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC---CCC--CccEEeehhhh
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AIS--PAYAVLLKWIL 183 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~~--~~D~~~~~~vl 183 (259)
..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ ..+|++++.+|..+ ..+ .||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 34999999999999999999999999999999 999999987 24799999999876 233 59999986544
Q ss_pred ccCChHH--HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 184 LDWNDEE--CVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 184 h~~~d~~--~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+...... ...++++++++|+| ||.+++.-.
T Consensus 170 ~~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAP---GGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCC---CcEEEEEec
Confidence 4332221 15799999999999 887766554
No 144
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.23 E-value=3.5e-11 Score=99.55 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=81.0
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC---C
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS---P 173 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~---~ 173 (259)
.+++.++ ..+..+|||||||+|.++..+++..| .+++++|+ +.+++.+++ ...++++..+|+..+++ +
T Consensus 82 ~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (235)
T 1jg1_A 82 IMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 158 (235)
T ss_dssp HHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCC
Confidence 3444445 56677999999999999999999988 89999998 888888876 33579999999855544 3
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
||+|++..+++++++ ++.+.|+| ||++++.-.
T Consensus 159 fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~~~ 190 (235)
T 1jg1_A 159 YDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIPVG 190 (235)
T ss_dssp EEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred ccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEEEe
Confidence 999999999998775 57889999 888877654
No 145
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.23 E-value=3.3e-11 Score=99.46 Aligned_cols=98 Identities=8% Similarity=0.156 Sum_probs=81.5
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---C---CCccEEe
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I---SPAYAVL 178 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~---~~~D~~~ 178 (259)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++ ..++++++.+|+.+. . ..||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 44567999999999999999999999999999999 888888876 236899999999872 2 2599999
Q ss_pred ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
+....+ ....+++++.+.|+| ||.+++.+..
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~~ 162 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRP---GGLILSDNVL 162 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEE---EEEEEEETTT
T ss_pred ECCCHH-----HHHHHHHHHHHHcCC---CeEEEEEcCC
Confidence 877664 245789999999999 8988886543
No 146
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.22 E-value=3.3e-11 Score=95.61 Aligned_cols=103 Identities=18% Similarity=0.209 Sum_probs=83.5
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC---C
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI---S 172 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~---~ 172 (259)
.+++.+. .....+|||+|||+|.++..+++.. .+++++|. +.+++.+++ ..+++++..+|+.++. +
T Consensus 24 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 99 (192)
T 1l3i_A 24 LIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99 (192)
T ss_dssp HHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred HHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCC
Confidence 3444455 5667899999999999999999987 78999999 888888776 2268999999987622 4
Q ss_pred CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.||+|++..++|+ ...+++++.+.|+| ||++++....
T Consensus 100 ~~D~v~~~~~~~~-----~~~~l~~~~~~l~~---gG~l~~~~~~ 136 (192)
T 1l3i_A 100 DIDIAVVGGSGGE-----LQEILRIIKDKLKP---GGRIIVTAIL 136 (192)
T ss_dssp CEEEEEESCCTTC-----HHHHHHHHHHTEEE---EEEEEEEECB
T ss_pred CCCEEEECCchHH-----HHHHHHHHHHhcCC---CcEEEEEecC
Confidence 6999999887764 35789999999999 8998887653
No 147
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.22 E-value=1.1e-11 Score=101.73 Aligned_cols=102 Identities=12% Similarity=0.155 Sum_probs=81.0
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC---CC------CCc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK---AI------SPA 174 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~---~~------~~~ 174 (259)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++ ..++++++.+|+.+ .. ..|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34578999999999999999999864 889999999 888888876 34689999999754 12 259
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
|+|++....|.+.+ ..++++.+ +.|+| ||.|++.+...+
T Consensus 136 D~V~~d~~~~~~~~--~~~~~~~~-~~Lkp---gG~lv~~~~~~~ 174 (221)
T 3u81_A 136 DMVFLDHWKDRYLP--DTLLLEKC-GLLRK---GTVLLADNVIVP 174 (221)
T ss_dssp SEEEECSCGGGHHH--HHHHHHHT-TCCCT---TCEEEESCCCCC
T ss_pred EEEEEcCCcccchH--HHHHHHhc-cccCC---CeEEEEeCCCCc
Confidence 99999887776643 34677777 99999 898877766543
No 148
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.22 E-value=3.9e-11 Score=98.63 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=78.6
Q ss_pred cCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCC--CCCC--CccEEeehh
Q 041250 112 FEGLNSLVDVGGG-TGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMF--KAIS--PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~--~~~~--~~D~~~~~~ 181 (259)
..+..+|||+||| +|.++..+++.. ..+++++|+ +.+++.+++ ...+++++.+|+. .+.+ .||+|++..
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4567899999999 999999999987 679999999 888888876 2338999999963 3443 599999887
Q ss_pred hhccCChHH-----------------HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 182 ILLDWNDEE-----------------CVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 182 vlh~~~d~~-----------------~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.+|..++.. ...+++++.+.|+| ||++++.-.
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 180 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLP 180 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEec
Confidence 666544322 36899999999999 899888643
No 149
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.22 E-value=3.1e-11 Score=100.21 Aligned_cols=99 Identities=11% Similarity=0.149 Sum_probs=74.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------CCCCeEEEeCCCCC--C--CC--Cc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------DLVNLKYVGGDMFK--A--IS--PA 174 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~ri~~~~~d~~~--~--~~--~~ 174 (259)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ ...+++++.+|+.+ + ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4456899999999999999999999999999999 788876642 34689999999986 2 33 48
Q ss_pred cEEeehhhhccCChH---H----HHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 175 YAVLLKWILLDWNDE---E----CVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 175 D~~~~~~vlh~~~d~---~----~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
|.|++...-. |... . ...+|++++++|+| ||.|++..
T Consensus 125 D~v~~~~~dp-~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDP-HFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT 168 (235)
T ss_dssp EEEEEESCC------------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eEEEEeCCCc-hhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence 9887643221 2110 0 13699999999999 89888764
No 150
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.22 E-value=7.4e-11 Score=103.21 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=80.8
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC--
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-- 172 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-- 172 (259)
..+.+... ..+..+|||||||+|.++..++++ +..+++++|+.++++.|++ ..++++++.+|+.+ +.+
T Consensus 54 ~~i~~~~~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 130 (340)
T 2fyt_A 54 DFIYQNPH--IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVE 130 (340)
T ss_dssp HHHHHCGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCS
T ss_pred HHHHhhhh--hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCC
Confidence 34444444 556789999999999999999887 4568999999668888776 23799999999988 555
Q ss_pred CccEEeehhhhccC-ChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250 173 PAYAVLLKWILLDW-NDEECVKILKKCKEAITRDGKKRKVI 212 (259)
Q Consensus 173 ~~D~~~~~~vlh~~-~d~~~~~il~~~~~~L~p~~~gg~ll 212 (259)
+||+|++..+.+.+ .......+++++.+.|+| ||+++
T Consensus 131 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 168 (340)
T 2fyt_A 131 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAK---GGSVY 168 (340)
T ss_dssp CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred cEEEEEEcCchhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence 59999987643332 223456799999999999 88876
No 151
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.22 E-value=2.3e-11 Score=99.73 Aligned_cols=101 Identities=9% Similarity=0.074 Sum_probs=81.7
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---C------CCc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I------SPA 174 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~------~~~ 174 (259)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ ..++++++.+|..+. . ..|
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 34567999999999999999999988 789999999 888888876 346799999998662 1 459
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
|+|++.. +.+....+++++.+.|+| ||.|++.+...+.
T Consensus 142 D~v~~~~-----~~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~g 179 (225)
T 3tr6_A 142 DLIYIDA-----DKANTDLYYEESLKLLRE---GGLIAVDNVLRRG 179 (225)
T ss_dssp EEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECSSGGG
T ss_pred cEEEECC-----CHHHHHHHHHHHHHhcCC---CcEEEEeCCCcCC
Confidence 9998654 234456799999999999 8988887776543
No 152
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.22 E-value=6.8e-12 Score=107.02 Aligned_cols=129 Identities=16% Similarity=0.098 Sum_probs=87.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CC------------C---------------------
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DL------------V--------------------- 158 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~------------~--------------------- 158 (259)
...+|||||||+|.+. .++...+..+++++|+ +.+++.|++ .. .
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 4679999999999944 3444444569999999 888887664 10 0
Q ss_pred -CeEEEeCCCCC--C-----CC--CccEEeehhhhccCChH--HHHHHHHHHHHhcccCCCCcEEEEEeeeecCCCCCch
Q 041250 159 -NLKYVGGDMFK--A-----IS--PAYAVLLKWILLDWNDE--ECVKILKKCKEAITRDGKKRKVIIKDMIKENRKKDYK 226 (259)
Q Consensus 159 -ri~~~~~d~~~--~-----~~--~~D~~~~~~vlh~~~d~--~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~~~~~ 226 (259)
.++++.+|+.+ + .+ .||+|++..++|+.+++ +..++|++++++|+| ||+|++.+.... ...
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~~~~-~~~--- 222 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEE-SWY--- 222 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESC-CEE---
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCc-ceE---
Confidence 14566778876 2 22 29999999999985533 567899999999999 999999864321 100
Q ss_pred hhhhhhhhhhhhhhccCccccCHHHHHHHHhcC
Q 041250 227 SIETQLFFEMFMMVLLTGTERDEKEWAKIFADS 259 (259)
Q Consensus 227 ~~~~~~~~d~~m~~~~~g~~rt~~e~~~ll~~a 259 (259)
. ..+. ......++.++|+++|+++
T Consensus 223 --~---~~~~----~~~~~~~~~~~l~~~l~~a 246 (289)
T 2g72_A 223 --L---AGEA----RLTVVPVSEEEVREALVRS 246 (289)
T ss_dssp --E---ETTE----EEECCCCCHHHHHHHHHHT
T ss_pred --E---cCCe----eeeeccCCHHHHHHHHHHc
Confidence 0 0000 0112346888999888764
No 153
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.22 E-value=5.5e-11 Score=105.57 Aligned_cols=97 Identities=9% Similarity=0.046 Sum_probs=82.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC--CccEEeehhhhcc
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS--PAYAVLLKWILLD 185 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~ 185 (259)
...+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ ..+ .||+|++...+|.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 4679999999999999999998 569999999 888888876 33459999999998 333 5999999999887
Q ss_pred ---CChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 186 ---WNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 186 ---~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
...+...++++++.+.|+| ||+++|+.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence 3456678999999999999 89988864
No 154
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.21 E-value=6.8e-11 Score=97.26 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=80.6
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCCCC---Ccc
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKAIS---PAY 175 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~~~---~~D 175 (259)
.+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ...+++++.+|+.+..+ .||
T Consensus 61 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 3444444 5667899999999999999999986 68999999 888888876 22289999999987332 599
Q ss_pred EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+|++..++|++++ ++.+.|+| ||++++...
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~~~ 166 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKE---GGIMILPIG 166 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred EEEECCcHHHHHH--------HHHHHcCC---CcEEEEEEc
Confidence 9999999998874 47889999 899888764
No 155
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.21 E-value=3.4e-11 Score=99.50 Aligned_cols=95 Identities=9% Similarity=0.085 Sum_probs=74.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCC--C---C-CccEEeeh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA--I---S-PAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~--~---~-~~D~~~~~ 180 (259)
+....+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+.+ ...+++++.+|+.++ . + .||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999986 7789999999 554443332 237899999999872 2 2 49999984
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
.. ..+....+++++.+.|+| ||.+++
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i 180 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRN---GGHFVI 180 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEE---EEEEEE
T ss_pred CC----CccHHHHHHHHHHHHcCC---CeEEEE
Confidence 33 334456789999999999 888877
No 156
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.20 E-value=5.8e-11 Score=99.75 Aligned_cols=99 Identities=9% Similarity=0.041 Sum_probs=78.4
Q ss_pred cC-CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-C--CC--CccEEe
Q 041250 112 FE-GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A--IS--PAYAVL 178 (259)
Q Consensus 112 ~~-~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~--~~--~~D~~~ 178 (259)
.. +..+|||+|||+|.++..++++.+. +++++|+ +.+++.|++ ..+|++++.+|+.+ + ++ .||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 45 6789999999999999999999776 9999999 888888876 34689999999988 3 32 599999
Q ss_pred ehhhhccC------------------ChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 179 LKWILLDW------------------NDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 179 ~~~vlh~~------------------~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
+...++.. .......+++.+.+.|+| ||+++++
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 175 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFV 175 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEE
Confidence 96443322 113345799999999999 8998885
No 157
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.20 E-value=3.2e-11 Score=106.97 Aligned_cols=102 Identities=10% Similarity=0.063 Sum_probs=82.2
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWIL 183 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vl 183 (259)
..+..+|||||||+|.++..++++. ..+++++|...+++.+++ ..++++++.+|+.+ +.+ .||+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4557899999999999999999883 348999999888877776 45789999999988 555 59999997766
Q ss_pred ccCCh-HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 184 LDWND-EECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 184 h~~~d-~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
|.... .....+++++.+.|+| ||.+++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCC---CeEEEEecCe
Confidence 66543 3356799999999999 8988776654
No 158
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.20 E-value=9.4e-11 Score=91.59 Aligned_cols=105 Identities=16% Similarity=0.225 Sum_probs=81.9
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeechHHHhhcccCCCCeEEEeCCCCC-C--------CC-
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDLPHVVNGLESDLVNLKYVGGDMFK-A--------IS- 172 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~--------~~- 172 (259)
+++.+. ......+|||+|||+|.++..+++.+ |+.+++++|+.+++. ..+++++.+|+.+ + .+
T Consensus 13 ~~~~~~-~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 13 IQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP-----IVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp HHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC-----CTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred HHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc-----cCcEEEEEcccccchhhhhhhccCCC
Confidence 444443 13456799999999999999999984 778999999955432 2689999999988 4 54
Q ss_pred -CccEEeehhhhccCChHH---------HHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 173 -PAYAVLLKWILLDWNDEE---------CVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 173 -~~D~~~~~~vlh~~~d~~---------~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.||+|++...+|..+... ...+++++.+.|+| ||.+++..+.
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~ 138 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVFQ 138 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEES
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEec
Confidence 499999988888665431 15889999999999 8998887653
No 159
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.20 E-value=2.1e-12 Score=108.12 Aligned_cols=101 Identities=10% Similarity=-0.044 Sum_probs=73.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCC----CCCC-----CccEE
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMF----KAIS-----PAYAV 177 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~----~~~~-----~~D~~ 177 (259)
...+|||+|||+|.++..+++++|+.+++++|+ +.+++.|++ ...+++++.+|.. ++.+ .||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 467999999999999999999988899999999 899988876 3457999999853 3333 49999
Q ss_pred eehhhhccCCh-------------HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 178 LLKWILLDWND-------------EECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 178 ~~~~vlh~~~d-------------~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
++...+|.... +....++++++++|+| ||++.+++.+
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~~~ 194 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVKRI 194 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHH---HTHHHHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEHHH
Confidence 99866654331 1123567888999999 8888777654
No 160
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.20 E-value=1.3e-10 Score=93.50 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=77.8
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCC--CCeEEEeechHHHhhcccCCCCeEEEeCCCCC-C----------
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP--KLECTCFDLPHVVNGLESDLVNLKYVGGDMFK-A---------- 170 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~---------- 170 (259)
+.+.+. .+....+|||+|||+|.++..+++++| +.+++++|+.++. ..++++++.+|+.+ +
T Consensus 13 ~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~i 86 (201)
T 2plw_A 13 LDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----PIPNVYFIQGEIGKDNMNNIKNINYI 86 (201)
T ss_dssp HHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----CCTTCEEEECCTTTTSSCCC------
T ss_pred HHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----CCCCceEEEccccchhhhhhcccccc
Confidence 444544 235567999999999999999999998 6899999995531 24579999999987 4
Q ss_pred ---------------CC--CccEEeehhhhccCC----hHH-----HHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 171 ---------------IS--PAYAVLLKWILLDWN----DEE-----CVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 171 ---------------~~--~~D~~~~~~vlh~~~----d~~-----~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
++ .||+|++...+|... +.. ..++++++.++|+| ||++++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~ 154 (201)
T 2plw_A 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVKM 154 (201)
T ss_dssp -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 34 599999887776432 211 13489999999999 89887744
No 161
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.19 E-value=1.3e-11 Score=104.14 Aligned_cols=100 Identities=15% Similarity=0.097 Sum_probs=76.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhccc----CC-----------------------------
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLES----DL----------------------------- 157 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----~~----------------------------- 157 (259)
.+..+|||||||+|.++..++.. +. +++++|+ +.+++.|++ ..
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 34578999999999887765544 33 6999999 888887764 10
Q ss_pred -CCeE-EEeCCCCCC-------CCCccEEeehhhhccC-C-hHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 158 -VNLK-YVGGDMFKA-------ISPAYAVLLKWILLDW-N-DEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 158 -~ri~-~~~~d~~~~-------~~~~D~~~~~~vlh~~-~-d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.+++ ++.+|+.+. .+.||+|++..+||+. + .++..++|++++++|+| ||++++.+..
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~ 199 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTL 199 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEES
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEee
Confidence 1244 889999872 2359999999999974 3 35667899999999999 9999998653
No 162
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.19 E-value=6.9e-11 Score=98.71 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=85.4
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhcccC------CCCeEEEeCCCCC-CCC
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLESD------LVNLKYVGGDMFK-AIS 172 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~------~~ri~~~~~d~~~-~~~ 172 (259)
..++..++ +....+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++. .+++++..+|+.+ +++
T Consensus 86 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 86 SAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 34566666 667789999999999999999998 78899999998 8888888761 3789999999988 365
Q ss_pred --CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 173 --PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 173 --~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.||+|++ ++++. ..+++++.++|+| ||++++..+.
T Consensus 164 ~~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~ 200 (258)
T 2pwy_A 164 EAAYDGVAL-----DLMEP--WKVLEKAALALKP---DRFLVAYLPN 200 (258)
T ss_dssp TTCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESC
T ss_pred CCCcCEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCC
Confidence 4999987 34443 3789999999999 9999998854
No 163
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.19 E-value=9.1e-11 Score=101.59 Aligned_cols=101 Identities=15% Similarity=0.241 Sum_probs=82.3
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCC---C
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI---S 172 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~ 172 (259)
.+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +++++.+++ ...+++++.+|+.+.. .
T Consensus 66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 3455555 56678999999999999999999887 478999999 888888876 3457999999998732 2
Q ss_pred CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+||+|++..++|+.+ +++.+.|+| ||++++...
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~~ 176 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPIN 176 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEEBC
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEEEC
Confidence 599999999999887 457789999 899888753
No 164
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.18 E-value=5.2e-11 Score=100.30 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=80.0
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCC--CccEEeehhhhccCCh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AIS--PAYAVLLKWILLDWND 188 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d 188 (259)
....+|||||||+|.++..+++..|+.+++++|+ +.+++.+++...++.+..+|+.+ +.+ .||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4567999999999999999999998899999999 88999888766789999999987 554 59999976542
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 189 EECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 189 ~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
..++++.++|+| ||++++..+..
T Consensus 159 ----~~l~~~~~~L~p---gG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKP---GGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEE---EEEEEEEEECT
T ss_pred ----hhHHHHHHhcCC---CcEEEEEEcCH
Confidence 258999999999 99999887643
No 165
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.18 E-value=5e-11 Score=102.19 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=75.9
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----------CCCCeEEEeCCCCCC--C-C-CccEE
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----------DLVNLKYVGGDMFKA--I-S-PAYAV 177 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~d~~~~--~-~-~~D~~ 177 (259)
+++.+|||||||+|..+.++++..|..+++++|+ +.+++.|++ ..+|++++.+|.++. . + .||+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 4578999999999999999999877889999999 899998876 146999999999873 2 2 59999
Q ss_pred eehhhhccCChHHH--HHHHHHHHHhcccCCCCcEEEEEe
Q 041250 178 LLKWILLDWNDEEC--VKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 178 ~~~~vlh~~~d~~~--~~il~~~~~~L~p~~~gg~lli~e 215 (259)
++...-+..+.... ..++++++++|+| ||.+++.-
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~Lkp---gG~lv~~~ 198 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQN 198 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCC---CCEEEEec
Confidence 98654433333222 5799999999999 88777654
No 166
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.18 E-value=2.1e-11 Score=101.63 Aligned_cols=101 Identities=13% Similarity=0.160 Sum_probs=81.4
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C-C------CCc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-I------SPA 174 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~------~~~ 174 (259)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++ ..++|+++.+|..+ + . ..|
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 34578999999999999999999986 889999999 888888776 34699999999976 2 2 359
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
|+|++... ......+++++.+.|+| ||.|++.+.....
T Consensus 138 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~g 175 (242)
T 3r3h_A 138 DFIFIDAD-----KTNYLNYYELALKLVTP---KGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSSSS
T ss_pred eEEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEECCccCC
Confidence 99987643 33356789999999999 8888777665543
No 167
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.18 E-value=3.4e-11 Score=100.45 Aligned_cols=94 Identities=17% Similarity=0.250 Sum_probs=73.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------------CCCCeEEEeCCCCCC----CC--
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------------DLVNLKYVGGDMFKA----IS-- 172 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~ri~~~~~d~~~~----~~-- 172 (259)
....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++++.+|+++. ++
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4567899999999999999999999999999998 788877654 126899999999872 22
Q ss_pred CccEEeehhhhccCChHHH-----------HHHHHHHHHhcccCCCCcEEEEE
Q 041250 173 PAYAVLLKWILLDWNDEEC-----------VKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~-----------~~il~~~~~~L~p~~~gg~lli~ 214 (259)
.+|.+++. +++... ..+++++.++|+| ||.|++.
T Consensus 128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~ 172 (246)
T 2vdv_E 128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI 172 (246)
T ss_dssp CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence 36766633 232210 3799999999999 8988884
No 168
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.18 E-value=1.3e-10 Score=95.37 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=75.3
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCC-----CC-CccEEeeh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA-----IS-PAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~-----~~-~~D~~~~~ 180 (259)
+....+|||+|||+|.++..+++.. |+.+++++|. +.+++.+++ ..++++++.+|+.++ .+ .||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4566799999999999999999885 6789999999 766665544 337999999999872 23 49999965
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
.. ..+....+++++.+.|+| ||++++.
T Consensus 151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~ 177 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA 177 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CC----CHhHHHHHHHHHHHhcCC---CCEEEEE
Confidence 33 233344569999999999 8999888
No 169
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.17 E-value=9.7e-11 Score=96.81 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=79.7
Q ss_pred cCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCCC--CC----CccEEeeh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFKA--IS----PAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~--~~----~~D~~~~~ 180 (259)
+....+|||+|||+|.++..+++. .|+.+++++|+ |.+++.+++ ...++..+.+|...+ .+ .+|++++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 677899999999999999999997 59999999999 888887766 457899999988773 12 37877643
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
+++. ++...+++++++.||| ||+++|......
T Consensus 155 --~~~~--~~~~~~l~~~~r~LKp---GG~lvI~ik~r~ 186 (233)
T 4df3_A 155 --VAQP--EQAAIVVRNARFFLRD---GGYMLMAIKARS 186 (233)
T ss_dssp --CCCT--THHHHHHHHHHHHEEE---EEEEEEEEECCH
T ss_pred --ccCC--hhHHHHHHHHHHhccC---CCEEEEEEeccc
Confidence 2222 2345789999999999 999988754433
No 170
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.17 E-value=3.8e-11 Score=103.48 Aligned_cols=100 Identities=11% Similarity=0.077 Sum_probs=77.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---------CCCCeEEEeCCCCC-C-C--C-CccEE
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---------DLVNLKYVGGDMFK-A-I--S-PAYAV 177 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~-~-~--~-~~D~~ 177 (259)
+++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ ..+|++++.+|..+ . . + .||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998878889999999 888888876 24799999999977 2 1 2 59999
Q ss_pred eehhhhccCChHHH--HHHHHHHHHhcccCCCCcEEEEEe
Q 041250 178 LLKWILLDWNDEEC--VKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 178 ~~~~vlh~~~d~~~--~~il~~~~~~L~p~~~gg~lli~e 215 (259)
++....+.++.... ..++++++++|+| ||.+++..
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 210 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQG 210 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEec
Confidence 99777666654433 5789999999999 89888764
No 171
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.17 E-value=3.3e-11 Score=94.16 Aligned_cols=96 Identities=9% Similarity=-0.009 Sum_probs=72.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCC-------CccEEeehh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS-------PAYAVLLKW 181 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~-------~~D~~~~~~ 181 (259)
...+|||+|||+|.++..+++..++ ++++|+ +.+++.+++ ...+++++.+|+.+..+ .||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5679999999999999999998765 999999 888888876 11289999999976211 599999998
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.+| ...++..+.+.+ .+.|+| ||.+++...
T Consensus 119 ~~~-~~~~~~~~~~~~-~~~L~~---gG~~~~~~~ 148 (171)
T 1ws6_A 119 PYA-MDLAALFGELLA-SGLVEA---GGLYVLQHP 148 (171)
T ss_dssp CTT-SCTTHHHHHHHH-HTCEEE---EEEEEEEEE
T ss_pred CCc-hhHHHHHHHHHh-hcccCC---CcEEEEEeC
Confidence 777 222333333333 499999 888776554
No 172
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.17 E-value=7.2e-11 Score=102.78 Aligned_cols=98 Identities=12% Similarity=0.127 Sum_probs=77.3
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehhh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKWI 182 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~v 182 (259)
..+..+|||||||+|.++..++++ +..+++++|..++++.|++ ..++++++.+|+.+ +.| ++|+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 445679999999999999998886 4568999999778877765 34789999999988 555 5999998865
Q ss_pred hccCC-hHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 183 LLDWN-DEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 183 lh~~~-d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
.|.+. .+....+++++.+.|+| ||.++.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVE---GGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCC---CeEEEE
Confidence 44432 23345789999999999 888763
No 173
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.16 E-value=8.1e-11 Score=93.32 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=75.0
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC-------CCCccEEe
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA-------ISPAYAVL 178 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~-------~~~~D~~~ 178 (259)
....+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ ..++++++.+|+.+. ...||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 3467999999999999999887 45679999999 889888876 236899999999872 23599999
Q ss_pred ehhhhccCChHHHHHHHHHH--HHhcccCCCCcEEEEEee
Q 041250 179 LKWILLDWNDEECVKILKKC--KEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 179 ~~~vlh~~~d~~~~~il~~~--~~~L~p~~~gg~lli~e~ 216 (259)
+...+|....+ ..++.+ .+.|+| ||.+++...
T Consensus 122 ~~~~~~~~~~~---~~~~~l~~~~~L~~---gG~l~~~~~ 155 (187)
T 2fhp_A 122 LDPPYAKQEIV---SQLEKMLERQLLTN---EAVIVCETD 155 (187)
T ss_dssp ECCCGGGCCHH---HHHHHHHHTTCEEE---EEEEEEEEE
T ss_pred ECCCCCchhHH---HHHHHHHHhcccCC---CCEEEEEeC
Confidence 98776643333 345555 788999 888776654
No 174
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.15 E-value=1.1e-10 Score=96.30 Aligned_cols=97 Identities=7% Similarity=-0.027 Sum_probs=79.7
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC-C--CccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI-S--PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~-~--~~D~~~~~~ 181 (259)
.++..+|+|||||+|.+++.+++..|..+++++|+ |.+++.|++ ..++|++..+|.++.. + .||+|++..
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 34567999999999999999999999889999999 889988887 4578999999999943 3 499988765
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
+ ..+....||....+.|++ +|++++.-
T Consensus 99 m----Gg~lI~~IL~~~~~~l~~---~~~lIlqp 125 (230)
T 3lec_A 99 M----GGRLIADILNNDIDKLQH---VKTLVLQP 125 (230)
T ss_dssp E----CHHHHHHHHHHTGGGGTT---CCEEEEEE
T ss_pred C----chHHHHHHHHHHHHHhCc---CCEEEEEC
Confidence 3 335567889888888988 77766655
No 175
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.15 E-value=1.3e-10 Score=98.50 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=84.8
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC-
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS- 172 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~- 172 (259)
..++..++ +....+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ ..++++++.+|+.+.++
T Consensus 102 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 102 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 34566666 667789999999999999999999 78899999999 888888876 12689999999988544
Q ss_pred -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.||+|++ +.++. ..+++++.++|+| ||++++....
T Consensus 180 ~~~D~V~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~ 215 (277)
T 1o54_A 180 KDVDALFL-----DVPDP--WNYIDKCWEALKG---GGRFATVCPT 215 (277)
T ss_dssp CSEEEEEE-----CCSCG--GGTHHHHHHHEEE---EEEEEEEESS
T ss_pred CccCEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence 5999987 34432 3789999999999 8999888753
No 176
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.15 E-value=7.8e-11 Score=98.86 Aligned_cols=97 Identities=19% Similarity=0.299 Sum_probs=77.6
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCC--CCccEEeehhhhc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAI--SPAYAVLLKWILL 184 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~--~~~D~~~~~~vlh 184 (259)
..+..+|||+|||+|.++..+++..+ +++++|+ |.+++.+++ ..-.+++..+|+.++. ..||+|++....|
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 35568999999999999999998765 9999999 888888876 1212899999988744 3599999865443
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
....+++++.+.|+| ||++++.+...
T Consensus 196 -----~~~~~l~~~~~~Lkp---gG~lils~~~~ 221 (254)
T 2nxc_A 196 -----LHAALAPRYREALVP---GGRALLTGILK 221 (254)
T ss_dssp -----HHHHHHHHHHHHEEE---EEEEEEEEEEG
T ss_pred -----HHHHHHHHHHHHcCC---CCEEEEEeecc
Confidence 356899999999999 89998877654
No 177
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.14 E-value=1.5e-10 Score=95.11 Aligned_cols=96 Identities=8% Similarity=0.132 Sum_probs=76.8
Q ss_pred CeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CC-CCeEEEeCCCCC---CC-C-CccEEeehh
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DL-VNLKYVGGDMFK---AI-S-PAYAVLLKW 181 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~d~~~---~~-~-~~D~~~~~~ 181 (259)
.+|||||||+|..+..+++..| +.+++++|+ +.+++.|++ .. +|++++.+|..+ .. + .||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 3999999999999999999875 889999999 888888876 23 689999999876 23 2 599998764
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
.. .....+++++.+.|+| ||.|++.+....
T Consensus 138 ~~-----~~~~~~l~~~~~~Lkp---GG~lv~dn~~~~ 167 (221)
T 3dr5_A 138 SP-----MDLKALVDAAWPLLRR---GGALVLADALLD 167 (221)
T ss_dssp CT-----TTHHHHHHHHHHHEEE---EEEEEETTTTGG
T ss_pred cH-----HHHHHHHHHHHHHcCC---CcEEEEeCCCCC
Confidence 32 2345689999999999 887777665543
No 178
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.14 E-value=4.9e-11 Score=96.87 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=78.4
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--CC-CCccEEeehh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--AI-SPAYAVLLKW 181 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~~-~~~D~~~~~~ 181 (259)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ ..++++++.+|..+ +. ++||+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 4567999999999999999999988 889999999 888888876 34689999999876 22 1399998763
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
. ......+++++.+.|+| ||.+++.+...
T Consensus 135 ~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~ 163 (210)
T 3c3p_A 135 D-----VFNGADVLERMNRCLAK---NALLIAVNALR 163 (210)
T ss_dssp T-----TSCHHHHHHHHGGGEEE---EEEEEEESSSS
T ss_pred C-----hhhhHHHHHHHHHhcCC---CeEEEEECccc
Confidence 2 22346799999999999 88887766543
No 179
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.13 E-value=2.6e-11 Score=99.80 Aligned_cols=87 Identities=9% Similarity=0.148 Sum_probs=73.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC--CCC---CccEEeehhhhccC
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK--AIS---PAYAVLLKWILLDW 186 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~--~~~---~~D~~~~~~vlh~~ 186 (259)
....+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++++++.+|+.+ +.+ .||+|+++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 45689999999999999999998 579999999 89999988767789999999976 433 499998871
Q ss_pred ChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250 187 NDEECVKILKKCKEAITRDGKKRKVI 212 (259)
Q Consensus 187 ~d~~~~~il~~~~~~L~p~~~gg~ll 212 (259)
+...+++++++.|+| ||+++
T Consensus 120 ---~~~~~l~~~~~~Lkp---gG~l~ 139 (226)
T 3m33_A 120 ---GPTSVILRLPELAAP---DAHFL 139 (226)
T ss_dssp ---CCSGGGGGHHHHEEE---EEEEE
T ss_pred ---CHHHHHHHHHHHcCC---CcEEE
Confidence 134689999999999 89887
No 180
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.13 E-value=1.1e-10 Score=99.14 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=79.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC-CC-CccEEeehhhh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA-IS-PAYAVLLKWIL 183 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~-~~-~~D~~~~~~vl 183 (259)
.+..+|||+|||+|.++..+++..+. +++++|+ |.+++.+++ ..++++++.+|+++. .. .||+|++....
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 44689999999999999999999876 8999999 888988876 345799999999983 33 59999885331
Q ss_pred ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
....+++++.+.|+| ||.+++.+...
T Consensus 203 ------~~~~~l~~~~~~Lkp---gG~l~~~~~~~ 228 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKD---GAIIHYHNTVP 228 (278)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEEEEEE
T ss_pred ------hHHHHHHHHHHHCCC---CeEEEEEEeec
Confidence 124689999999999 99999988875
No 181
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.13 E-value=5e-11 Score=93.99 Aligned_cols=98 Identities=10% Similarity=0.029 Sum_probs=75.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---C-CCccEEeehh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I-SPAYAVLLKW 181 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~-~~~D~~~~~~ 181 (259)
....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..++++++.+|+.+. . ..||+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 35679999999999999999987 6679999999 888888876 225899999999772 2 2599999886
Q ss_pred hhccCChHHHHHHHHHHH--HhcccCCCCcEEEEEeee
Q 041250 182 ILLDWNDEECVKILKKCK--EAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~--~~L~p~~~gg~lli~e~~ 217 (259)
.+|. .....+++.+. +.|+| ||.+++....
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~~~~ 140 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLSE---QVMVVCETDK 140 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEEE---EEEEEEEEET
T ss_pred CCCc---chHHHHHHHHHhCCCcCC---CcEEEEEECC
Confidence 6542 22345666666 89999 8887776543
No 182
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.13 E-value=1.6e-10 Score=96.02 Aligned_cols=97 Identities=9% Similarity=0.061 Sum_probs=79.7
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCC---CccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAIS---PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~---~~D~~~~~~ 181 (259)
.++..+|+|||||+|.+++.+++..|..+++++|+ |.+++.|++ ..++|++..+|.++..+ .||+|++..
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 34567999999999999999999999889999999 888888887 45789999999999443 399988764
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
...+....||....+.|++ ++++++.-
T Consensus 99 ----mGg~lI~~IL~~~~~~L~~---~~~lIlq~ 125 (244)
T 3gnl_A 99 ----MGGTLIRTILEEGAAKLAG---VTKLILQP 125 (244)
T ss_dssp ----ECHHHHHHHHHHTGGGGTT---CCEEEEEE
T ss_pred ----CchHHHHHHHHHHHHHhCC---CCEEEEEc
Confidence 3335567889999999988 77776664
No 183
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.12 E-value=1.6e-10 Score=96.55 Aligned_cols=100 Identities=10% Similarity=0.066 Sum_probs=80.2
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C-C-------CC
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-I-------SP 173 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~-------~~ 173 (259)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++ ..++|+++.+|..+ + . ..
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 34568999999999999999999988 789999999 888888876 33689999999875 2 2 35
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
||+|++... ......+++++.+.|+| ||.|++.+...+
T Consensus 157 fD~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~ 194 (247)
T 1sui_A 157 YDFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYDNTLWN 194 (247)
T ss_dssp BSEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEECTTGG
T ss_pred EEEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEecCCcC
Confidence 999988643 22356789999999999 898877665443
No 184
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.12 E-value=2.3e-10 Score=100.57 Aligned_cols=110 Identities=14% Similarity=0.077 Sum_probs=85.3
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCC-
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AIS- 172 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~- 172 (259)
..++.... +.+..+|||+|||+|.++++++... |+.+++++|+ +.+++.|++ ..++++++.+|+.+ +.+
T Consensus 193 ~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 193 QALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 44455555 5667899999999999999999988 8899999999 899988886 22389999999998 433
Q ss_pred -CccEEeehhhhccC-C-hHH----HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 173 -PAYAVLLKWILLDW-N-DEE----CVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 173 -~~D~~~~~~vlh~~-~-d~~----~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.+|+|++....+.. . ..+ -..+++++.+.|+| ||++++...
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t~ 318 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLTL 318 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEES
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence 58999986544321 1 111 25789999999999 999988754
No 185
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.12 E-value=9.3e-11 Score=97.25 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=80.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C-C---------
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-I--------- 171 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~--------- 171 (259)
..+..+|||||||+|..+..+++..| ..+++++|+ +.+++.+++ ...+++++.+|..+ + .
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 45578999999999999999999987 689999999 888888876 23569999999865 2 1
Q ss_pred --------CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 172 --------SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 172 --------~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
..||+|++... .+....+++++.+.|+| ||.+++.+...+
T Consensus 138 ~~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 185 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKP---GGLLIADNVLWD 185 (239)
T ss_dssp GTTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred cccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCC---CeEEEEEccccC
Confidence 45999988743 33345789999999999 898888765443
No 186
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.12 E-value=1.3e-10 Score=95.41 Aligned_cols=100 Identities=12% Similarity=0.134 Sum_probs=80.7
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCC---C------CCc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKA---I------SPA 174 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~------~~~ 174 (259)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ ..++++++.+|+.+. . ..|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 45678999999999999999999987 789999999 888888876 247999999998652 1 459
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
|+|++... ......+++++.+.|+| ||.+++.+....
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 183 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRP---GGILAVLRVLWR 183 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEE---EEEEEEECCSGG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEECCCcC
Confidence 99988532 33356789999999999 888888776543
No 187
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.11 E-value=1.3e-10 Score=91.70 Aligned_cols=86 Identities=8% Similarity=-0.003 Sum_probs=70.9
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCC-CC---C--CccEEeehhhh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK-AI---S--PAYAVLLKWIL 183 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~-~~---~--~~D~~~~~~vl 183 (259)
.....+|||||||. +.+|+ +.+++.|++ ...+++++.+|+.+ +. + .||+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56678999999996 23888 889998887 44569999999987 44 4 49999999999
Q ss_pred ccC-ChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 184 LDW-NDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 184 h~~-~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
|++ ++. .++|++++++|+| ||++++.++..
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~ 104 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRP---GGCLFLKEPVE 104 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEE---EEEEEEEEEEE
T ss_pred hhcccCH--HHHHHHHHHHCCC---CEEEEEEcccc
Confidence 998 654 5899999999999 99999976654
No 188
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.11 E-value=8.8e-11 Score=94.99 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=75.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CC--CCeEEEeCCCCC--CC---CC-ccEEee
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DL--VNLKYVGGDMFK--AI---SP-AYAVLL 179 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~--~ri~~~~~d~~~--~~---~~-~D~~~~ 179 (259)
...+|||+|||+|.++..++++.. .+++++|+ +.+++.|++ .. ++++++.+|+.+ +. .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 357999999999999999887743 58999999 899988876 22 699999999876 22 26 999999
Q ss_pred hhhhccCChHHHHHHHHHH--HHhcccCCCCcEEEEEeee
Q 041250 180 KWILLDWNDEECVKILKKC--KEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 180 ~~vlh~~~d~~~~~il~~~--~~~L~p~~~gg~lli~e~~ 217 (259)
...+| .. ....+++.+ .+.|+| ||.+++....
T Consensus 132 ~~~~~-~~--~~~~~l~~~~~~~~Lkp---gG~l~i~~~~ 165 (201)
T 2ift_A 132 DPPFH-FN--LAEQAISLLCENNWLKP---NALIYVETEK 165 (201)
T ss_dssp CCCSS-SC--HHHHHHHHHHHTTCEEE---EEEEEEEEES
T ss_pred CCCCC-Cc--cHHHHHHHHHhcCccCC---CcEEEEEECC
Confidence 87765 33 345778888 557999 8887776554
No 189
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.10 E-value=3e-10 Score=96.13 Aligned_cols=104 Identities=10% Similarity=0.140 Sum_probs=83.5
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc----C----CCCeEEEeCCCCC-C
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES----D----LVNLKYVGGDMFK-A 170 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~----~~ri~~~~~d~~~-~ 170 (259)
..++..++ .....+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ . .++++++.+|+.+ +
T Consensus 89 ~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 89 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 34555666 667789999999999999999996 57889999999 888888776 2 4689999999987 4
Q ss_pred CC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 171 IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 171 ~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.+ .||+|++. .++. ..+++++.++|+| ||++++..+.
T Consensus 167 ~~~~~~D~v~~~-----~~~~--~~~l~~~~~~L~p---gG~l~~~~~~ 205 (280)
T 1i9g_A 167 LPDGSVDRAVLD-----MLAP--WEVLDAVSRLLVA---GGVLMVYVAT 205 (280)
T ss_dssp CCTTCEEEEEEE-----SSCG--GGGHHHHHHHEEE---EEEEEEEESS
T ss_pred CCCCceeEEEEC-----CcCH--HHHHHHHHHhCCC---CCEEEEEeCC
Confidence 43 59999872 3332 2689999999999 8999988753
No 190
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.10 E-value=4.6e-11 Score=99.48 Aligned_cols=101 Identities=15% Similarity=0.057 Sum_probs=85.3
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCC--CccEEeehhhhc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS--PAYAVLLKWILL 184 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~--~~D~~~~~~vlh 184 (259)
...+.+|||||||.|-++..+....|+.+++++|+ +.+++.+++ ...+.++...|+....| ++|++++.-++|
T Consensus 130 i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 130 LPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLP 209 (281)
T ss_dssp SCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHH
T ss_pred cCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHH
Confidence 35588999999999999999999999999999999 889988877 46678999999998433 599999999999
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
++.+++....+ ++.++|+| +|.++-.+.
T Consensus 210 ~Le~q~kg~g~-~ll~aL~~---~~vvVSfp~ 237 (281)
T 3lcv_B 210 CLETQQRGSGW-EVIDIVNS---PNIVVTFPT 237 (281)
T ss_dssp HHHHHSTTHHH-HHHHHSSC---SEEEEEEEC
T ss_pred HhhhhhhHHHH-HHHHHhCC---CCEEEeccc
Confidence 99887766677 89999999 554444443
No 191
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.09 E-value=5e-10 Score=91.85 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=78.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-----CCCeEEEeec-hHHHhhccc-----C-----CCCeEEEeCCCCCCC----
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-----PKLECTCFDL-PHVVNGLES-----D-----LVNLKYVGGDMFKAI---- 171 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----~-----~~ri~~~~~d~~~~~---- 171 (259)
.....+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++ . .++++++.+|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4556799999999999999999986 6789999999 888888876 2 578999999998743
Q ss_pred C---CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 172 S---PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 172 ~---~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+ .||+|++...+|+. ++++.+.|+| ||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAE---NGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCC---CcEEEEEEc
Confidence 2 59999999888864 4678899999 898887754
No 192
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=99.08 E-value=3.2e-10 Score=94.10 Aligned_cols=98 Identities=11% Similarity=0.094 Sum_probs=78.6
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C-C-------CC
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-I-------SP 173 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~-------~~ 173 (259)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ ..++++++.+|..+ + . ..
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 45678999999999999999999987 789999999 888888876 34589999999876 2 2 35
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
||+|++.. +......+++++.+.|+| ||.|++.+..
T Consensus 148 fD~I~~d~-----~~~~~~~~l~~~~~~L~p---GG~lv~d~~~ 183 (237)
T 3c3y_A 148 YDFGFVDA-----DKPNYIKYHERLMKLVKV---GGIVAYDNTL 183 (237)
T ss_dssp EEEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECTT
T ss_pred cCEEEECC-----chHHHHHHHHHHHHhcCC---CeEEEEecCC
Confidence 99998753 233456899999999999 7877665543
No 193
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.07 E-value=7.4e-10 Score=91.82 Aligned_cols=101 Identities=14% Similarity=0.116 Sum_probs=81.3
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC-C--
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI-S-- 172 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~-~-- 172 (259)
.++..++ .....+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++..+|+.+.. +
T Consensus 82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 4555555 566789999999999999999998 679999998 888888876 2378999999999854 4
Q ss_pred CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 173 PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
+||+|++. .++ ...+++++.+.|+| ||++++....
T Consensus 158 ~~D~v~~~-----~~~--~~~~l~~~~~~L~~---gG~l~~~~~~ 192 (248)
T 2yvl_A 158 IFHAAFVD-----VRE--PWHYLEKVHKSLME---GAPVGFLLPT 192 (248)
T ss_dssp CBSEEEEC-----SSC--GGGGHHHHHHHBCT---TCEEEEEESS
T ss_pred cccEEEEC-----CcC--HHHHHHHHHHHcCC---CCEEEEEeCC
Confidence 59999872 333 23679999999999 9999887753
No 194
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=99.07 E-value=1.3e-10 Score=98.72 Aligned_cols=99 Identities=14% Similarity=0.076 Sum_probs=77.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEeCCCCC--CC-C-CccEEe
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFK--AI-S-PAYAVL 178 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~d~~~--~~-~-~~D~~~ 178 (259)
.++.+|||||||+|.++.++++..|..+++++|+ |.+++.+++ . .+|++++.+|.++ +. + .||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3468999999999999999998777789999999 899998876 1 4799999999876 22 2 599999
Q ss_pred ehhhhccCChHH--HHHHHHHHHHhcccCCCCcEEEEE
Q 041250 179 LKWILLDWNDEE--CVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 179 ~~~vlh~~~d~~--~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
+....+..+.+. ...++++++++|+| ||.+++.
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~ 188 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 865443332211 24789999999999 7877665
No 195
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.07 E-value=3.4e-10 Score=91.55 Aligned_cols=97 Identities=11% Similarity=0.109 Sum_probs=74.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC--CCC--CccEEeehhhh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK--AIS--PAYAVLLKWIL 183 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~--~~~--~~D~~~~~~vl 183 (259)
...+|||+|||+|.++..++++.. .+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 357999999999999999888753 38999999 899988876 23699999999876 332 59999988775
Q ss_pred ccCChHHHHHHHHHHHH--hcccCCCCcEEEEEeee
Q 041250 184 LDWNDEECVKILKKCKE--AITRDGKKRKVIIKDMI 217 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~--~L~p~~~gg~lli~e~~ 217 (259)
| +.+ ...+++.+.+ .|+| ||.+++....
T Consensus 133 ~-~~~--~~~~l~~l~~~~~L~p---gG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-RGL--LEETINLLEDNGWLAD---EALIYVESEV 162 (202)
T ss_dssp S-TTT--HHHHHHHHHHTTCEEE---EEEEEEEEEG
T ss_pred C-CCc--HHHHHHHHHhcCccCC---CcEEEEEECC
Confidence 5 332 3467777766 4999 8887766543
No 196
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.06 E-value=5.6e-10 Score=89.68 Aligned_cols=104 Identities=11% Similarity=0.262 Sum_probs=75.9
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCCC----------
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKAI---------- 171 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~---------- 171 (259)
..+.+.+. .+.+..+|||+|||+|.++..++++ ..+++++|+.++. ..++++++.+|+.+..
T Consensus 14 ~ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----~~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 14 EFLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----EIAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp HHHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----CCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred HHHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----cCCCeEEEEccccCHHHHHHHHHHhh
Confidence 44555555 2456789999999999999999988 7799999995431 3468999999998732
Q ss_pred ----CCccEEeehhhhcc---------CChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 172 ----SPAYAVLLKWILLD---------WNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 172 ----~~~D~~~~~~vlh~---------~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
..||+|++...... ...+.+..+++.+.+.|+| ||.+++..+
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~~ 140 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQF 140 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEEc
Confidence 36999987532111 1112345789999999999 898876554
No 197
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=99.06 E-value=3.4e-10 Score=93.37 Aligned_cols=96 Identities=9% Similarity=0.038 Sum_probs=80.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-CCC-CccEEeehhhhcc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLD 185 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~ 185 (259)
..+.+|||||||.|-++..+. |..+++++|+ +.+++.+++ ...+.++...|+.. +.| .+|++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 557899999999999999988 8999999999 899998887 56889999999998 555 5999999999999
Q ss_pred CChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 186 WNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+.+++....+ ++.++|++ + +++|.-+
T Consensus 181 LE~q~~~~~~-~ll~aL~~---~-~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNT---P-RMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBC---S-EEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcC---C-CEEEEcC
Confidence 8777655555 88889998 4 4555544
No 198
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.06 E-value=3.2e-10 Score=93.22 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=76.9
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC------CCeEEEeec-hHHHhhccc-----C-----CCCeEEEeCCCCCCCC--
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP------KLECTCFDL-PHVVNGLES-----D-----LVNLKYVGGDMFKAIS-- 172 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----~-----~~ri~~~~~d~~~~~~-- 172 (259)
.....+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++ . .++++++.+|..++++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45567999999999999999998765 368999998 888888876 1 5789999999987443
Q ss_pred -CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 173 -PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 173 -~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
.||+|++...+|+.. +++.+.|+| ||++++.-
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEEE
Confidence 599999999988765 568889999 88887764
No 199
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=99.06 E-value=2.3e-10 Score=97.61 Aligned_cols=100 Identities=12% Similarity=0.050 Sum_probs=79.4
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEeCCCCCC---CC-CccEEe
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFKA---IS-PAYAVL 178 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~d~~~~---~~-~~D~~~ 178 (259)
+++.+|||||||+|..+..+++..|..+++++|+ |.+++.+++ . .+|++++.+|..+. .+ .||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998878889999999 889988876 1 47999999998762 23 599999
Q ss_pred ehhhhccCChHHH--HHHHHHHHHhcccCCCCcEEEEEe
Q 041250 179 LKWILLDWNDEEC--VKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 179 ~~~vlh~~~d~~~--~~il~~~~~~L~p~~~gg~lli~e 215 (259)
+....+..+.+.. ..++++++++|+| ||.+++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEEC
Confidence 8644333233222 5899999999999 88877663
No 200
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=99.06 E-value=2.2e-10 Score=99.06 Aligned_cols=100 Identities=13% Similarity=0.098 Sum_probs=74.9
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEeCCCCCC----CCCccEEe
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFKA----ISPAYAVL 178 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~d~~~~----~~~~D~~~ 178 (259)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ . .+|++++.+|..+. ...||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4567999999999999999999888889999999 899988876 1 47899999998762 22599999
Q ss_pred ehhhhccCChHHH--HHHHHHHHHhcccCCCCcEEEEEe
Q 041250 179 LKWILLDWNDEEC--VKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 179 ~~~vlh~~~d~~~--~~il~~~~~~L~p~~~gg~lli~e 215 (259)
+...-|..+++.. ..++++++++|+| ||.+++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEE---EEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCC---CeEEEEEC
Confidence 8554332222222 6899999999999 78777654
No 201
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=99.05 E-value=3e-10 Score=96.23 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=83.3
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC-CC-CccEEeehhhh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA-IS-PAYAVLLKWIL 183 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~-~~-~~D~~~~~~vl 183 (259)
+.+..+|||+|||+|.++..+++..+..+++++|+ |.+++.+++ ...++.++.+|+.+. .+ .||+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45668999999999999999999998889999999 899988876 346899999999874 32 59999887543
Q ss_pred ccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
...++++++.+.|+| ||.+++......+.
T Consensus 197 ------~~~~~l~~~~~~Lkp---gG~l~~s~~~~~~~ 225 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKD---RGVIHYHETVAEKI 225 (272)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGG
T ss_pred ------cHHHHHHHHHHHcCC---CCEEEEEEcCcccc
Confidence 234689999999999 89998888776543
No 202
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.05 E-value=7.4e-10 Score=95.82 Aligned_cols=109 Identities=10% Similarity=0.102 Sum_probs=82.7
Q ss_pred HHhcccccCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C-CC-Cc
Q 041250 105 IQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A-IS-PA 174 (259)
Q Consensus 105 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~-~~-~~ 174 (259)
...++ .....+|||+|||+|..+..+++..+ +.+++++|+ +.+++.+++ ...+++++.+|+.+ + .+ .|
T Consensus 111 ~~~l~--~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~f 188 (315)
T 1ixk_A 111 PVALD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEF 188 (315)
T ss_dssp HHHHC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCE
T ss_pred HHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccC
Confidence 34445 56678999999999999999999875 579999999 788887776 34589999999987 3 23 59
Q ss_pred cEEeeh------hhhcc-------CChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 175 YAVLLK------WILLD-------WNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 175 D~~~~~------~vlh~-------~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
|+|++. .+++. |+.++ ..++|+++.+.|+| ||++++.....
T Consensus 189 D~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs~ 249 (315)
T 1ixk_A 189 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSL 249 (315)
T ss_dssp EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred CEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCCC
Confidence 999973 22332 33322 25899999999999 89988876544
No 203
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=99.05 E-value=2e-10 Score=94.94 Aligned_cols=100 Identities=12% Similarity=0.158 Sum_probs=79.9
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC--C-C------CCc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK--A-I------SPA 174 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~------~~~ 174 (259)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++ ..++++++.+|..+ + . ..|
T Consensus 70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 34567999999999999999999987 789999999 888888876 33689999999754 1 1 459
Q ss_pred cEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 175 YAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
|+|++... ......+++++.+.|+| ||.|++.+...+
T Consensus 150 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~~ 186 (232)
T 3cbg_A 150 DLIFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVIDNVLWH 186 (232)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEECTTGG
T ss_pred CEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEeCCCcC
Confidence 99987643 23456789999999999 888887766554
No 204
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=99.05 E-value=2.5e-10 Score=99.06 Aligned_cols=99 Identities=12% Similarity=0.084 Sum_probs=77.2
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---C------CCCeEEEeCCCCCC---CC-CccEEe
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---D------LVNLKYVGGDMFKA---IS-PAYAVL 178 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~------~~ri~~~~~d~~~~---~~-~~D~~~ 178 (259)
+++.+|||||||+|.++.++++..|..+++++|+ |.+++.+++ . .+|++++.+|..+. .+ .||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3467999999999999999998878889999999 899988876 1 46899999998762 22 599999
Q ss_pred ehhhhccCChHHH--HHHHHHHHHhcccCCCCcEEEEE
Q 041250 179 LKWILLDWNDEEC--VKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 179 ~~~vlh~~~d~~~--~~il~~~~~~L~p~~~gg~lli~ 214 (259)
+...-+..+.+.. .++++++++.|+| ||.+++.
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 229 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 229 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 7643221122211 5899999999999 7877765
No 205
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=99.05 E-value=7.7e-10 Score=90.64 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=76.7
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc---C-------CCCeEEEeCCCCCCC---CCccE
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES---D-------LVNLKYVGGDMFKAI---SPAYA 176 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---~-------~~ri~~~~~d~~~~~---~~~D~ 176 (259)
.....+|||||||+|..+..+++.. |+.+++++|+ +.+++.+++ . .++++++.+|..... ..||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4456799999999999999999885 7789999999 888888775 1 468999999998632 25999
Q ss_pred EeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 177 VLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 177 ~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
|++...++++. +++.+.|+| ||++++...
T Consensus 155 i~~~~~~~~~~--------~~~~~~Lkp---gG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKP---GGRLILPVG 183 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEE---EEEEEEEES
T ss_pred EEECCchHHHH--------HHHHHhcCC---CcEEEEEEe
Confidence 99998887654 578899999 898888654
No 206
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=99.04 E-value=2.3e-10 Score=99.03 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=80.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C---------CCCeEEEeCCCCC--C-CC-CccEE
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D---------LVNLKYVGGDMFK--A-IS-PAYAV 177 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~---------~~ri~~~~~d~~~--~-~~-~~D~~ 177 (259)
+++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ . .+|++++.+|..+ + .+ .||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4568999999999999999999878889999999 888888876 1 4799999999976 2 22 59999
Q ss_pred eehhhhcc---CChHH--HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 178 LLKWILLD---WNDEE--CVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 178 ~~~~vlh~---~~d~~--~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
++....|. -+.+. ..+++++++++|+| ||.+++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQTG 196 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEcc
Confidence 99766554 21111 25789999999999 888877643
No 207
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=99.04 E-value=6e-10 Score=94.10 Aligned_cols=98 Identities=16% Similarity=0.104 Sum_probs=71.8
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc-CC------CCeEEE--eCCCCC-CCCCccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES-DL------VNLKYV--GGDMFK-AISPAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~------~ri~~~--~~d~~~-~~~~~D~~~~~~ 181 (259)
+.+..+|||||||+|.++..+++. .+++++|+.+++..+++ .. .++.++ .+|+.+ +...||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 456679999999999999999887 58999999556444432 11 278999 999987 433699999876
Q ss_pred hhccCCh---H-H-HHHHHHHHHHhcccCCCCc--EEEEEee
Q 041250 182 ILLDWND---E-E-CVKILKKCKEAITRDGKKR--KVIIKDM 216 (259)
Q Consensus 182 vlh~~~d---~-~-~~~il~~~~~~L~p~~~gg--~lli~e~ 216 (259)
. |..++ + . ...+|+.+.++|+| || .+++-.+
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv~ 186 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKVL 186 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEES
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEeC
Confidence 6 43322 1 1 22489999999999 89 8777544
No 208
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=99.04 E-value=2.4e-10 Score=97.33 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=76.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------------CCCeEEEeCCCCCC---CCC
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------------LVNLKYVGGDMFKA---ISP 173 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------------~~ri~~~~~d~~~~---~~~ 173 (259)
.++.+|||||||+|.++..+++. |..+++++|+ |.+++.|++ . .+|++++.+|..+. ...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 34679999999999999999998 8889999999 888888775 2 46899999998652 235
Q ss_pred ccEEeehhhhccCChHH--HHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 174 AYAVLLKWILLDWNDEE--CVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~--~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
||+|++....+..+.+. ...+++++++.|+| ||.+++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEEc
Confidence 99999865543322222 25789999999999 78776653
No 209
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=99.04 E-value=1.8e-10 Score=99.23 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=76.4
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---C------CCCeEEEeCCCCC--CC-C-CccEEe
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---D------LVNLKYVGGDMFK--AI-S-PAYAVL 178 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~------~~ri~~~~~d~~~--~~-~-~~D~~~ 178 (259)
.+..+|||||||+|..+..+++..|..+++++|+ +.+++.|++ . .+|++++.+|..+ +. + .||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999999 889888876 1 5799999999876 22 2 599999
Q ss_pred ehhhhccCChH--HHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 179 LKWILLDWNDE--ECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 179 ~~~vlh~~~d~--~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
+....+..+.. ....++++++++|+| ||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence 86544332221 134689999999999 88777654
No 210
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.04 E-value=1.4e-09 Score=92.58 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=74.5
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec--hHHHhhcccCC---------------CCeEEEeCCCCCC---C
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL--PHVVNGLESDL---------------VNLKYVGGDMFKA---I 171 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~---------------~ri~~~~~d~~~~---~ 171 (259)
.....+|||||||+|.++..+++.. ..+++++|+ +.+++.+++.. +++++...|..+. .
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3456799999999999999888863 348999999 57887766511 4788886665431 1
Q ss_pred ------CCccEEeehhhhccCChHHHHHHHHHHHHhcc---cCCCCcEEEEE
Q 041250 172 ------SPAYAVLLKWILLDWNDEECVKILKKCKEAIT---RDGKKRKVIIK 214 (259)
Q Consensus 172 ------~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~---p~~~gg~lli~ 214 (259)
..||+|++..++|+.++ ...+++.+.+.|+ | ++||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p-~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPAN-DPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCC-CCCCEEEEE
Confidence 25999999999987554 4689999999999 6 236876654
No 211
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=99.03 E-value=5.4e-10 Score=94.89 Aligned_cols=98 Identities=16% Similarity=0.042 Sum_probs=71.9
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc-CC------CCeEEE--eCCCCC-CCCCccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES-DL------VNLKYV--GGDMFK-AISPAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~------~ri~~~--~~d~~~-~~~~~D~~~~~~ 181 (259)
+.+..+|||+|||+|.++..++++ .+++++|+.+++..+++ .. .++.++ .+|+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 456679999999999999999887 58999999556544432 11 278999 999987 433699999876
Q ss_pred hhccCCh----HH-HHHHHHHHHHhcccCCCCc--EEEEEee
Q 041250 182 ILLDWND----EE-CVKILKKCKEAITRDGKKR--KVIIKDM 216 (259)
Q Consensus 182 vlh~~~d----~~-~~~il~~~~~~L~p~~~gg--~lli~e~ 216 (259)
. +..+. .. ..++|+.+.+.|+| || .+++..+
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~~ 194 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKVL 194 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEES
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEeC
Confidence 6 43322 11 22479999999999 89 8777443
No 212
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.03 E-value=3.6e-10 Score=99.93 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=74.9
Q ss_pred CCCCeEEEecCC------chHHHHHHHHH-CCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CC--------CCcc
Q 041250 113 EGLNSLVDVGGG------TGTAAKAIAKA-FPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AI--------SPAY 175 (259)
Q Consensus 113 ~~~~~vlDvGgG------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~--------~~~D 175 (259)
.+..+||||||| +|..+..++++ +|+.+++++|+ +.+. . ..++|+|+.+|+.+ ++ ..||
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~-~~~rI~fv~GDa~dlpf~~~l~~~d~sFD 290 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---V-DELRIRTIQGDQNDAEFLDRIARRYGPFD 290 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---G-CBTTEEEEECCTTCHHHHHHHHHHHCCEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---h-cCCCcEEEEecccccchhhhhhcccCCcc
Confidence 356899999999 66677777765 59999999999 5552 1 45799999999988 33 3599
Q ss_pred EEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 176 AVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 176 ~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
+|++. ..|++. +..+.|++++++|+| ||.+++.|..
T Consensus 291 lVisd-gsH~~~--d~~~aL~el~rvLKP---GGvlVi~Dl~ 326 (419)
T 3sso_A 291 IVIDD-GSHINA--HVRTSFAALFPHVRP---GGLYVIEDMW 326 (419)
T ss_dssp EEEEC-SCCCHH--HHHHHHHHHGGGEEE---EEEEEEECGG
T ss_pred EEEEC-Ccccch--hHHHHHHHHHHhcCC---CeEEEEEecc
Confidence 99875 456554 356899999999999 8988888776
No 213
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.03 E-value=1.2e-09 Score=87.27 Aligned_cols=104 Identities=13% Similarity=0.202 Sum_probs=76.3
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC---------CeEEEeechHHHhhcccCCCCeEEE-eCCCCC-C--
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK---------LECTCFDLPHVVNGLESDLVNLKYV-GGDMFK-A-- 170 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~ri~~~-~~d~~~-~-- 170 (259)
+.+.+. .+....+|||+|||+|.++..+++++|. .+++++|+.++. ...+++++ .+|+.+ +
T Consensus 13 l~~~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----~~~~~~~~~~~d~~~~~~~ 86 (196)
T 2nyu_A 13 VNERHQ-ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----PLEGATFLCPADVTDPRTS 86 (196)
T ss_dssp HHHHHC-CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----CCTTCEEECSCCTTSHHHH
T ss_pred HHHhcC-CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----cCCCCeEEEeccCCCHHHH
Confidence 344444 2456789999999999999999999865 799999995531 23578999 999876 2
Q ss_pred ------CC--CccEEeehhhhcc---C-ChHH-----HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 171 ------IS--PAYAVLLKWILLD---W-NDEE-----CVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 171 ------~~--~~D~~~~~~vlh~---~-~d~~-----~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.+ .||+|++...+|. + .+.. ...+++++.+.|+| ||++++..+
T Consensus 87 ~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 146 (196)
T 2nyu_A 87 QRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW 146 (196)
T ss_dssp HHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred HHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence 22 5999998654442 1 2221 14789999999999 899888765
No 214
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=99.02 E-value=3.4e-10 Score=98.69 Aligned_cols=99 Identities=15% Similarity=0.102 Sum_probs=77.6
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEeCCCCC---CCC--CccEE
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFK---AIS--PAYAV 177 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~d~~~---~~~--~~D~~ 177 (259)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ . .+|++++.+|..+ ..+ .||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888889999999 889988876 1 4699999999875 232 59999
Q ss_pred eehhhhccCChHH--HHHHHHHHHHhcccCCCCcEEEEE
Q 041250 178 LLKWILLDWNDEE--CVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 178 ~~~~vlh~~~d~~--~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
++...-+..+.+. ...++++++++|+| ||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9854321111111 35899999999999 8877775
No 215
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=99.01 E-value=3.6e-10 Score=96.43 Aligned_cols=103 Identities=17% Similarity=0.278 Sum_probs=77.7
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--C----CCCeEEEeCCCCC-CCC
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--D----LVNLKYVGGDMFK-AIS 172 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~----~~ri~~~~~d~~~-~~~ 172 (259)
...+++.++ .....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ . .++++++.+|+.+ +.+
T Consensus 17 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~ 92 (285)
T 1zq9_A 17 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 92 (285)
T ss_dssp HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence 455666666 5667899999999999999999984 48999999 888888776 1 2689999999998 677
Q ss_pred CccEEeehhhhccCChHHHHHHHH--------------HH--HHhcccCCCCcEE
Q 041250 173 PAYAVLLKWILLDWNDEECVKILK--------------KC--KEAITRDGKKRKV 211 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il~--------------~~--~~~L~p~~~gg~l 211 (259)
.+|+|+.+ ..++|..+....+|. ++ +.+++| ||++
T Consensus 93 ~fD~vv~n-lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP---Gg~~ 143 (285)
T 1zq9_A 93 FFDTCVAN-LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP---GDKL 143 (285)
T ss_dssp CCSEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT---TCTT
T ss_pred hhcEEEEe-cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC---CCcc
Confidence 89988874 444465555555553 33 358899 8865
No 216
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=99.01 E-value=3.8e-10 Score=96.83 Aligned_cols=99 Identities=9% Similarity=0.058 Sum_probs=74.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEeCCCCC--CC-C-CccEEe
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFK--AI-S-PAYAVL 178 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~d~~~--~~-~-~~D~~~ 178 (259)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ . .+|++++.+|..+ +. + .||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 3457999999999999999999878889999999 888888876 1 4799999999866 22 2 599999
Q ss_pred ehhhhccCC-hH--HHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 179 LKWILLDWN-DE--ECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 179 ~~~vlh~~~-d~--~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
+...-+... .. ...++++++++.|+| ||.+++.
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 204 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 204 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 753322011 11 125789999999999 7877765
No 217
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.01 E-value=1.3e-09 Score=90.09 Aligned_cols=96 Identities=9% Similarity=0.029 Sum_probs=71.8
Q ss_pred cCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHH----hhcccCCCCeEEEeCCCCCCC------CCccEEee
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVV----NGLESDLVNLKYVGGDMFKAI------SPAYAVLL 179 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~----~~a~~~~~ri~~~~~d~~~~~------~~~D~~~~ 179 (259)
+....+|||+|||+|.++..+++. .|+.+++++|+ +.++ +.++ ...++.++.+|...+. ..||+|++
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~-~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~ 152 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQ-RRPNIFPLLADARFPQSYKSVVENVDVLYV 152 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHH-HCTTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCeEEEEcccccchhhhccccceEEEEe
Confidence 566789999999999999999986 57889999999 6554 3343 2368999999998631 25999887
Q ss_pred hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
.... + ++...+++++.+.|+| ||++++..
T Consensus 153 d~a~---~-~~~~il~~~~~~~Lkp---GG~lvisi 181 (232)
T 3id6_C 153 DIAQ---P-DQTDIAIYNAKFFLKV---NGDMLLVI 181 (232)
T ss_dssp CCCC---T-THHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cCCC---h-hHHHHHHHHHHHhCCC---CeEEEEEE
Confidence 6432 2 3333455666679999 99998874
No 218
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.00 E-value=1e-09 Score=95.65 Aligned_cols=103 Identities=14% Similarity=0.152 Sum_probs=80.3
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeec-hHHHhhccc--C--------------CCCeEEE
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDL-PHVVNGLES--D--------------LVNLKYV 163 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~--~--------------~~ri~~~ 163 (259)
..++..++ .....+|||+|||+|.++..+++. .|+.+++++|+ +.+++.|++ . .++++++
T Consensus 95 ~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 95 NMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 34555555 667789999999999999999998 58889999999 888888876 1 3689999
Q ss_pred eCCCCCC---CC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 164 GGDMFKA---IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 164 ~~d~~~~---~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.+|+.+. ++ .||+|++.. ++. ..+++++.+.|+| ||++++...
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~-----~~~--~~~l~~~~~~Lkp---gG~lv~~~~ 220 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDM-----LNP--HVTLPVFYPHLKH---GGVCAVYVV 220 (336)
T ss_dssp ESCTTCCC-------EEEEEECS-----SST--TTTHHHHGGGEEE---EEEEEEEES
T ss_pred ECChHHcccccCCCCeeEEEECC-----CCH--HHHHHHHHHhcCC---CcEEEEEeC
Confidence 9999873 33 499998742 211 1378999999999 899987765
No 219
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.00 E-value=9.9e-10 Score=88.34 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=68.6
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHH
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEEC 191 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~ 191 (259)
....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++...+++++.+|+.+....||+|++...+|.+++...
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~ 128 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD 128 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence 35679999999999999999987 5557999999 899998887434899999999872246999999999998876555
Q ss_pred HHHHHHHHHhc
Q 041250 192 VKILKKCKEAI 202 (259)
Q Consensus 192 ~~il~~~~~~L 202 (259)
.++++++.+.+
T Consensus 129 ~~~l~~~~~~~ 139 (200)
T 1ne2_A 129 RAFIDKAFETS 139 (200)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHhc
Confidence 67888888776
No 220
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.98 E-value=2.3e-11 Score=100.79 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=75.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C--CCCeEEEeCCCCC-CCC-CccEEeehhhhc
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D--LVNLKYVGGDMFK-AIS-PAYAVLLKWILL 184 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh 184 (259)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ . .++++++.+|+.+ +.+ .||+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 56899999999999999999974 78999999 888888876 2 2689999999988 322 699999999888
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
..++.. ..+.+++++|+| ||.+++
T Consensus 156 ~~~~~~--~~~~~~~~~L~p---gG~~i~ 179 (241)
T 3gdh_A 156 GPDYAT--AETFDIRTMMSP---DGFEIF 179 (241)
T ss_dssp SGGGGG--SSSBCTTTSCSS---CHHHHH
T ss_pred Ccchhh--hHHHHHHhhcCC---cceeHH
Confidence 766543 356678888888 787443
No 221
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.98 E-value=1.1e-09 Score=96.63 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=72.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhhccC
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDW 186 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~ 186 (259)
..+|||||||+|.++...+++. .-+++++|..++++.|++ ..++|+++.+|+.+ +.| ++|+|+.-+.-+..
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l 162 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGL 162 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTB
T ss_pred CCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccccc
Confidence 5789999999999988777653 347999999777777765 56899999999988 667 59999875443333
Q ss_pred ChH-HHHHHHHHHHHhcccCCCCcEEE
Q 041250 187 NDE-ECVKILKKCKEAITRDGKKRKVI 212 (259)
Q Consensus 187 ~d~-~~~~il~~~~~~L~p~~~gg~ll 212 (259)
..+ ....++....+.|+| ||.++
T Consensus 163 ~~e~~l~~~l~a~~r~Lkp---~G~~i 186 (376)
T 4hc4_A 163 LHESMLSSVLHARTKWLKE---GGLLL 186 (376)
T ss_dssp TTTCSHHHHHHHHHHHEEE---EEEEE
T ss_pred cccchhhhHHHHHHhhCCC---CceEC
Confidence 222 355778888899999 78765
No 222
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.98 E-value=1.3e-09 Score=92.38 Aligned_cols=105 Identities=13% Similarity=0.138 Sum_probs=79.5
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CC-----C-CccEE
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI-----S-PAYAV 177 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~-----~-~~D~~ 177 (259)
.....+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ ...+++++.+|+.+ +. + .||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 455689999999999999999999877 79999999 788887766 34589999999977 22 3 59999
Q ss_pred eehh------hhcc---CChH-------HHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 178 LLKW------ILLD---WNDE-------ECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 178 ~~~~------vlh~---~~d~-------~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
++.- +++. |+.+ ...++|+++.+.|+| ||++++......
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~~ 215 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSME 215 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCCC
Confidence 9862 2221 2221 236899999999999 898888766544
No 223
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.98 E-value=4.1e-10 Score=105.02 Aligned_cols=105 Identities=10% Similarity=0.091 Sum_probs=85.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC---CC-C-CccEEeeh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK---AI-S-PAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~-~-~~D~~~~~ 180 (259)
..++.+|||||||.|.++..+++. +.+++++|. +.+++.|+. ...+|+|..++..+ +. + .||+|++.
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~ 141 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL 141 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence 345679999999999999999998 679999999 888888875 23579999998865 22 2 59999999
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
.++|+.++.+...-+..+.+.|++ +++.++...+..+.
T Consensus 142 e~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~~e~ 179 (569)
T 4azs_A 142 SVFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAVKEE 179 (569)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCCTTS
T ss_pred cchhcCCCHHHHHHHHHHHHHhcc---ccceeeEEeccccc
Confidence 999999887766666778888888 78888877665543
No 224
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.97 E-value=1.2e-09 Score=93.15 Aligned_cols=101 Identities=8% Similarity=0.014 Sum_probs=75.0
Q ss_pred HHHHhcccccC-CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEe-CCCCC----CCC--C
Q 041250 103 VMIQKCKNVFE-GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVG-GDMFK----AIS--P 173 (259)
Q Consensus 103 ~~~~~~~~~~~-~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~-~d~~~----~~~--~ 173 (259)
.+++.+. +. ...+|||||||+|.++..+++. +..+++++|+ +.+++.+.+...|+.... .|+.. .+| .
T Consensus 75 ~~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 75 KALAVFN--LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHhcC--CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence 3455555 33 4569999999999999998887 4558999999 788877443455665543 34432 133 3
Q ss_pred ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 174 AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
||++++..++|++ ..+|++++++|+| ||++++.
T Consensus 152 fD~v~~d~sf~sl-----~~vL~e~~rvLkp---GG~lv~l 184 (291)
T 3hp7_A 152 PSFASIDVSFISL-----NLILPALAKILVD---GGQVVAL 184 (291)
T ss_dssp CSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEE
T ss_pred CCEEEEEeeHhhH-----HHHHHHHHHHcCc---CCEEEEE
Confidence 8999988888754 4689999999999 9999886
No 225
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.96 E-value=9.6e-10 Score=94.68 Aligned_cols=96 Identities=11% Similarity=0.088 Sum_probs=70.0
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-----hHHHhhccc---CCCCeEEEeC-CCCC-CCCCccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-----PHVVNGLES---DLVNLKYVGG-DMFK-AISPAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~---~~~ri~~~~~-d~~~-~~~~~D~~~~~~ 181 (259)
+.+..+|||||||+|.++..++++ .+++++|+ +..++.... ..+++.++.+ |+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 455679999999999999999887 47999998 444433221 2368999999 9987 444699999876
Q ss_pred hhc---cCChHH-HHHHHHHHHHhcccCCCCcEEEE
Q 041250 182 ILL---DWNDEE-CVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 182 vlh---~~~d~~-~~~il~~~~~~L~p~~~gg~lli 213 (259)
.++ ...+.. ...+|+.+.+.|+| ||.+++
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~ 189 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV 189 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEE
Confidence 553 222222 23689999999999 897766
No 226
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.93 E-value=2.7e-09 Score=89.90 Aligned_cols=90 Identities=11% Similarity=-0.004 Sum_probs=74.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-C--------CCCeEEEeCCCCCCCCCccEEeehhh
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-D--------LVNLKYVGGDMFKAISPAYAVLLKWI 182 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~d~~~~~~~~D~~~~~~v 182 (259)
+++.+|||||||+|..+.++++. + .+++++|+ +.+++.|++ . .+|++++.+|..+....||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 45679999999999999999988 7 89999999 899999886 1 368999999998733569999975
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
.++.. .+++++++.|+| ||.+++.
T Consensus 147 ---~~dp~--~~~~~~~~~L~p---gG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLKE---DGVFISV 170 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEEE---EEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcCC---CcEEEEE
Confidence 23332 489999999999 8887775
No 227
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.92 E-value=6.7e-09 Score=94.12 Aligned_cols=106 Identities=15% Similarity=0.130 Sum_probs=83.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC--CccEEee
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS--PAYAVLL 179 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~--~~D~~~~ 179 (259)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ...+++++.+|+.+ + ++ .||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 556679999999999999999999887 79999999 777777665 34689999999987 3 43 4999996
Q ss_pred ------hhhhccCChH-------HH-------HHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 180 ------KWILLDWNDE-------EC-------VKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 180 ------~~vlh~~~d~-------~~-------~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
..+++..++. +. .++|+++.+.|+| ||++++.+.....
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~~~ 394 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSIFK 394 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCCG
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence 3355544432 11 5789999999999 9999888775543
No 228
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=98.89 E-value=4.4e-09 Score=86.99 Aligned_cols=100 Identities=10% Similarity=0.057 Sum_probs=66.4
Q ss_pred HHHHHhccccc-CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEe---------CCCCCC
Q 041250 102 SVMIQKCKNVF-EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVG---------GDMFKA 170 (259)
Q Consensus 102 ~~~~~~~~~~~-~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~---------~d~~~~ 170 (259)
...++.+. . ....+|||||||+|.++..+++.. ..+++++|+ +.+++.+++...++.... .|+..+
T Consensus 26 ~~~L~~~~--~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (232)
T 3opn_A 26 EKALKEFH--LEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQG 102 (232)
T ss_dssp HHHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSC
T ss_pred HHHHHHcC--CCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcC
Confidence 34455554 3 345699999999999999999883 348999999 788887665444443322 222211
Q ss_pred CCCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 171 ISPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 171 ~~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
. +|.+.+..++..+ ..+|++++++|+| ||++++.
T Consensus 103 ~--~d~~~~D~v~~~l-----~~~l~~i~rvLkp---gG~lv~~ 136 (232)
T 3opn_A 103 R--PSFTSIDVSFISL-----DLILPPLYEILEK---NGEVAAL 136 (232)
T ss_dssp C--CSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEE
T ss_pred C--CCEEEEEEEhhhH-----HHHHHHHHHhccC---CCEEEEE
Confidence 1 3333333333332 4689999999999 9998885
No 229
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.87 E-value=8.6e-09 Score=92.20 Aligned_cols=107 Identities=8% Similarity=-0.040 Sum_probs=80.1
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCC--CCccE
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAI--SPAYA 176 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~--~~~D~ 176 (259)
...+++.+. .....+|||+|||+|.++..+++++ +..+++++|+ +.+++.| .+++++.+|+++.. ..||+
T Consensus 28 ~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~~~~~fD~ 101 (421)
T 2ih2_A 28 VDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWEPGEAFDL 101 (421)
T ss_dssp HHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCCCSSCEEE
T ss_pred HHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhcCccCCCCE
Confidence 344555554 3445699999999999999999987 6789999999 7777777 58999999999833 36999
Q ss_pred Eeehhhhcc----------CChHHH-----------------HHHHHHHHHhcccCCCCcEEEEEee
Q 041250 177 VLLKWILLD----------WNDEEC-----------------VKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 177 ~~~~~vlh~----------~~d~~~-----------------~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
|+..-.... .+++.. ..+++++.+.|+| ||+++++-+
T Consensus 102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p 165 (421)
T 2ih2_A 102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP 165 (421)
T ss_dssp EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 999632221 222221 2568999999999 898877765
No 230
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.85 E-value=4.3e-09 Score=92.06 Aligned_cols=100 Identities=10% Similarity=0.076 Sum_probs=81.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCC-----CeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCC--CccEEeehh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPK-----LECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAIS--PAYAVLLKW 181 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~--~~D~~~~~~ 181 (259)
...+|+|+|||+|.++..+++..+. .+++++|+ +.+++.|+. ...++.++.+|.+.+.+ .||+|+...
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 4579999999999999999998765 68999999 888888876 22378999999998543 599999998
Q ss_pred hhccCChHHH----------------HHHHHHHHHhcccCCCCcEEEEEee
Q 041250 182 ILLDWNDEEC----------------VKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 182 vlh~~~d~~~----------------~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.++.++.++. ..+++++.+.|+| ||+++++-+
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~p 257 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP 257 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 8776655432 2589999999999 898877764
No 231
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.83 E-value=2.7e-08 Score=80.10 Aligned_cols=89 Identities=19% Similarity=0.091 Sum_probs=71.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCCCCCccEEeehhhhccCC
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKAISPAYAVLLKWILLDWN 187 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~ 187 (259)
....+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++ ..-+++++.+|+.+....||+|++...+|.+.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 3467999999999999999998743 37999999 888888876 11289999999987323699999999888887
Q ss_pred hHHHHHHHHHHHHhc
Q 041250 188 DEECVKILKKCKEAI 202 (259)
Q Consensus 188 d~~~~~il~~~~~~L 202 (259)
.....++++++.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 555567888888776
No 232
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.82 E-value=1.1e-08 Score=85.24 Aligned_cols=83 Identities=11% Similarity=0.237 Sum_probs=62.3
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC-Cc
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS-PA 174 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~-~~ 174 (259)
...+++.++ .....+|||||||+|.++..++++. .+++++|+ +.+++.+++ ..++++++.+|+.+ +++ ..
T Consensus 19 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 94 (244)
T 1qam_A 19 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 94 (244)
T ss_dssp HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence 345565555 5667899999999999999999985 68999999 888888876 23799999999988 655 23
Q ss_pred cEEeehhhhccCC
Q 041250 175 YAVLLKWILLDWN 187 (259)
Q Consensus 175 D~~~~~~vlh~~~ 187 (259)
+..++++.-++++
T Consensus 95 ~~~vv~nlPy~~~ 107 (244)
T 1qam_A 95 SYKIFGNIPYNIS 107 (244)
T ss_dssp CCEEEEECCGGGH
T ss_pred CeEEEEeCCcccC
Confidence 3344444444443
No 233
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.82 E-value=1.1e-08 Score=89.18 Aligned_cols=99 Identities=18% Similarity=0.133 Sum_probs=74.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCC-CeEEEeCCCCCC-------CCCccEEe
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLV-NLKYVGGDMFKA-------ISPAYAVL 178 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~-ri~~~~~d~~~~-------~~~~D~~~ 178 (259)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ ..+ +++++.+|+++. ...||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 35699999999999999999974 39999999 889988876 223 599999999872 12599999
Q ss_pred ehhhh-cc------CC-hHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 179 LKWIL-LD------WN-DEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 179 ~~~vl-h~------~~-d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
+.... .. +. .+...++++++.+.|+| ||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp---gG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEEC
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc---CcEEEEEECC
Confidence 84321 10 10 23356899999999999 8987665544
No 234
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.81 E-value=7.8e-09 Score=88.75 Aligned_cols=90 Identities=16% Similarity=0.254 Sum_probs=66.5
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CCCC
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AISP 173 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~~ 173 (259)
...+++.++ .....+|||||||+|.++..++++ ..+++++|+ +.+++.+++ ..++++++.+|+.+ +.+.
T Consensus 31 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~ 106 (299)
T 2h1r_A 31 LDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK 106 (299)
T ss_dssp HHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCC
T ss_pred HHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCccc
Confidence 345555555 566789999999999999999987 458999999 888888776 23789999999988 6668
Q ss_pred ccEEeehhhhccCChHHHHHHH
Q 041250 174 AYAVLLKWILLDWNDEECVKIL 195 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d~~~~~il 195 (259)
+|+|++. ..++|..+...+++
T Consensus 107 ~D~Vv~n-~py~~~~~~~~~ll 127 (299)
T 2h1r_A 107 FDVCTAN-IPYKISSPLIFKLI 127 (299)
T ss_dssp CSEEEEE-CCGGGHHHHHHHHH
T ss_pred CCEEEEc-CCcccccHHHHHHH
Confidence 9988875 44557666666666
No 235
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.80 E-value=2.8e-08 Score=89.45 Aligned_cols=105 Identities=11% Similarity=0.096 Sum_probs=81.5
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCC---CC--CccEEee--
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA---IS--PAYAVLL-- 179 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~---~~--~~D~~~~-- 179 (259)
.....+|||+|||+|..+..+++..|+.+++++|+ +..++.+++ ..-+++++.+|+.+. ++ .||+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 45567999999999999999999999889999999 777777665 344689999999872 33 5999986
Q ss_pred ----hhhhccCCh-------HHH-------HHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 180 ----KWILLDWND-------EEC-------VKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 180 ----~~vlh~~~d-------~~~-------~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
..+++..++ ++. .++|+++.+.|+| ||++++......
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~~ 378 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVL 378 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence 234444333 222 4889999999999 899988876544
No 236
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.78 E-value=9.5e-09 Score=93.09 Aligned_cols=103 Identities=13% Similarity=0.059 Sum_probs=79.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC-CccEEeeh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS-PAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~-~~D~~~~~ 180 (259)
.....+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ ... +.++.+|..+ + .+ .||+|++.
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 556789999999999999999998865 68999999 888887776 334 9999999876 3 23 59999951
Q ss_pred -------------hhhccCChHHH-------HHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 181 -------------WILLDWNDEEC-------VKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 181 -------------~vlh~~~d~~~-------~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
.+...|+.+.. .++|+++.+.|+| ||+|+......
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeccC
Confidence 22233444333 6799999999999 89888765543
No 237
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.78 E-value=9e-09 Score=91.05 Aligned_cols=92 Identities=15% Similarity=0.046 Sum_probs=71.9
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC--CccEEeehh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS--PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~~~~~~ 181 (259)
+.+..+|||+|||+|.+++++++..+..+++++|+ +.+++.|++ ..++++++.+|+.+ +.+ .||+|++..
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 34567899999999999999999988778999999 899998887 23689999999998 544 599999975
Q ss_pred hhccCC-----hHH-HHHHHHHHHHhccc
Q 041250 182 ILLDWN-----DEE-CVKILKKCKEAITR 204 (259)
Q Consensus 182 vlh~~~-----d~~-~~~il~~~~~~L~p 204 (259)
.++... -++ -.++++.+++.| +
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l-~ 322 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL-E 322 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE-E
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc-C
Confidence 544221 111 257888999988 5
No 238
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.78 E-value=3.9e-08 Score=89.65 Aligned_cols=103 Identities=14% Similarity=0.185 Sum_probs=80.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC-CCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC-CccEEeeh--
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS-PAYAVLLK-- 180 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~-~~D~~~~~-- 180 (259)
...+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++ ...++.++.+|..+ + .+ .||.|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 578999999 788877766 34689999999987 3 34 59999972
Q ss_pred ----hhh-------ccCChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 181 ----WIL-------LDWNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 181 ----~vl-------h~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
.++ +.|+.++ ..++|+++.+.|+| ||+|++......
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~~ 250 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTLN 250 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCS
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccCC
Confidence 122 2354332 24789999999999 899887766443
No 239
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.74 E-value=3.4e-09 Score=88.24 Aligned_cols=105 Identities=14% Similarity=0.221 Sum_probs=76.2
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC---
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS--- 172 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~--- 172 (259)
...+++.++ .....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus 18 ~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 93 (245)
T 1yub_A 18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCC
Confidence 455666666 6667899999999999999999985 78999999 888888876 24689999999998 554
Q ss_pred CccEEeehhhhccCChHHHHHHH--------------HHHHHhcccCCCCcEEEEE
Q 041250 173 PAYAVLLKWILLDWNDEECVKIL--------------KKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~d~~~~~il--------------~~~~~~L~p~~~gg~lli~ 214 (259)
.| .++++.-++.+......++ +.+.+.|+| ||++.++
T Consensus 94 ~f--~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~ 144 (245)
T 1yub_A 94 RY--KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLL 144 (245)
T ss_dssp EE--EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHH
T ss_pred Cc--EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhh
Confidence 25 3444433334433333333 558888998 8876543
No 240
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.74 E-value=3.3e-08 Score=87.93 Aligned_cols=113 Identities=10% Similarity=0.000 Sum_probs=83.8
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC--------------------------------------CeEE
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK--------------------------------------LECT 142 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~ 142 (259)
+..++.... +.+..+|||.+||+|.++++++....+ .+++
T Consensus 190 Aa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 190 AAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 344555555 566789999999999999999876443 5699
Q ss_pred Eeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhhccC-C-hHHHHHHHHHHHHhcccCCCCcEE
Q 041250 143 CFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDW-N-DEECVKILKKCKEAITRDGKKRKV 211 (259)
Q Consensus 143 ~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~-~-d~~~~~il~~~~~~L~p~~~gg~l 211 (259)
++|+ +.+++.|++ ..++|+++.+|+++ +.+ .||+|++.--.+.- . .++...+.+.+.+.|++ -+|+++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~ 346 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSV 346 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEE
Confidence 9999 899998886 34679999999998 444 59999988544322 2 24556778877777775 337888
Q ss_pred EEEee
Q 041250 212 IIKDM 216 (259)
Q Consensus 212 li~e~ 216 (259)
+|+..
T Consensus 347 ~iit~ 351 (393)
T 3k0b_A 347 YVLTS 351 (393)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88764
No 241
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.73 E-value=1.6e-08 Score=85.69 Aligned_cols=100 Identities=14% Similarity=0.055 Sum_probs=79.0
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCC--CCccEEeehhh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAI--SPAYAVLLKWI 182 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~--~~~D~~~~~~v 182 (259)
+....+|||+|||+|.+++.+++.. ..+++++|+ |.+++.+++ ..++++++.+|.++-. ..||.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 4557899999999999999999873 568999999 888888776 5689999999998832 25999887632
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
.. +...|..+.+.|+| ||.|.+.+.+..+.
T Consensus 202 ~~------~~~~l~~a~~~lk~---gG~ih~~~~~~e~~ 231 (278)
T 3k6r_A 202 VR------THEFIPKALSIAKD---GAIIHYHNTVPEKL 231 (278)
T ss_dssp SS------GGGGHHHHHHHEEE---EEEEEEEEEEEGGG
T ss_pred Cc------HHHHHHHHHHHcCC---CCEEEEEeeecccc
Confidence 11 23578888899999 89888888765543
No 242
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.73 E-value=2.5e-08 Score=86.96 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=76.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCCCCCCccEEeehhhhcc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFKAISPAYAVLLKWILLD 185 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~ 185 (259)
.+..+|||+|||+|.++.. ++ +..+++++|+ +.+++.+++ ..++++++.+|.++....||+|++...-+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~~- 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPKF- 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTTT-
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcHh-
Confidence 4567999999999999999 76 4778999999 888888876 23689999999998446699999853211
Q ss_pred CChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
..++++.+.+.|+| ||.+++++....
T Consensus 270 -----~~~~l~~~~~~L~~---gG~l~~~~~~~~ 295 (336)
T 2yx1_A 270 -----AHKFIDKALDIVEE---GGVIHYYTIGKD 295 (336)
T ss_dssp -----GGGGHHHHHHHEEE---EEEEEEEEEESS
T ss_pred -----HHHHHHHHHHHcCC---CCEEEEEEeecC
Confidence 23789999999999 898888887655
No 243
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.72 E-value=1e-07 Score=84.45 Aligned_cols=113 Identities=14% Similarity=0.036 Sum_probs=86.0
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC--------------------------------------CeEE
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK--------------------------------------LECT 142 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~ 142 (259)
+..++.... +.+...|+|.+||+|.++++.+....+ .+++
T Consensus 183 Aaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 183 AAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 344555555 566789999999999999999875443 5699
Q ss_pred Eeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhhcc-C-ChHHHHHHHHHHHHhcccCCCCcEE
Q 041250 143 CFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLD-W-NDEECVKILKKCKEAITRDGKKRKV 211 (259)
Q Consensus 143 ~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~-~-~d~~~~~il~~~~~~L~p~~~gg~l 211 (259)
++|+ +.+++.|++ ..++++++.+|+++ +.+ .+|+|++.--.+. . ..++...+++.+.+.|++ -+|+++
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~~ 339 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWSQ 339 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcEE
Confidence 9999 899998886 34689999999998 444 5999998854432 3 345667888888888876 348888
Q ss_pred EEEee
Q 041250 212 IIKDM 216 (259)
Q Consensus 212 li~e~ 216 (259)
+|+..
T Consensus 340 ~iit~ 344 (384)
T 3ldg_A 340 FILTN 344 (384)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88764
No 244
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.69 E-value=2.8e-08 Score=88.47 Aligned_cols=100 Identities=15% Similarity=0.064 Sum_probs=76.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----C-CCCeEEEeCCCCCC--C----C-CccEEee
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----D-LVNLKYVGGDMFKA--I----S-PAYAVLL 179 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~~ri~~~~~d~~~~--~----~-~~D~~~~ 179 (259)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ . .++++++.+|+++. . . .||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5679999999999999999987 3458999999 888888876 2 23899999999872 1 2 5999998
Q ss_pred hhhhccCCh-------HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 180 KWILLDWND-------EECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 180 ~~vlh~~~d-------~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
....+..+. .....+++++.+.|+| ||.++++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEECC
Confidence 532221111 3456789999999999 8888877653
No 245
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.67 E-value=6.3e-08 Score=82.79 Aligned_cols=78 Identities=13% Similarity=0.211 Sum_probs=63.2
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCCC--
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AISP-- 173 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~-- 173 (259)
...+++.++ .....+|||||||+|.++..++++ ..+++++|+ +.+++.+++ ..++++++.+|+.+ +++.
T Consensus 39 ~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~ 114 (295)
T 3gru_A 39 VNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD 114 (295)
T ss_dssp HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred HHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence 345566666 666789999999999999999998 468999999 888888876 35799999999998 6663
Q ss_pred ccEEeehhh
Q 041250 174 AYAVLLKWI 182 (259)
Q Consensus 174 ~D~~~~~~v 182 (259)
||+|+.+..
T Consensus 115 fD~Iv~NlP 123 (295)
T 3gru_A 115 FNKVVANLP 123 (295)
T ss_dssp CSEEEEECC
T ss_pred ccEEEEeCc
Confidence 898886533
No 246
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.66 E-value=3.5e-08 Score=87.48 Aligned_cols=99 Identities=13% Similarity=0.058 Sum_probs=76.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC---C---C-CccEEeeh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---I---S-PAYAVLLK 180 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~---~---~-~~D~~~~~ 180 (259)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ..++++++.+|.++. . + .||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 4678999999999999999998 568999999 888888876 335599999999872 1 2 59999985
Q ss_pred hhhccCCh-------HHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 181 WILLDWND-------EECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 181 ~vlh~~~d-------~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
...+..+. +....+++++.+.|+| ||.+++....
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence 33222211 3456789999999999 8988887653
No 247
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.66 E-value=7.8e-08 Score=85.34 Aligned_cols=113 Identities=12% Similarity=0.049 Sum_probs=83.9
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC--------------------------------------CeEE
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK--------------------------------------LECT 142 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~ 142 (259)
+..++.... +.+..+|||.+||+|.++++++....+ .+++
T Consensus 184 Aa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 184 AAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 344555555 566789999999999999999876322 5799
Q ss_pred Eeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhhcc-CC-hHHHHHHHHHHHHhcccCCCCcEE
Q 041250 143 CFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLD-WN-DEECVKILKKCKEAITRDGKKRKV 211 (259)
Q Consensus 143 ~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~-~~-d~~~~~il~~~~~~L~p~~~gg~l 211 (259)
++|+ +.+++.|++ ..++|+|..+|+.+ +.+ .+|+|++.--.+. +. .++...+++.+.+.|++ -+|+++
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~ 340 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWSY 340 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCEE
Confidence 9999 899998887 34589999999998 444 5999998755432 22 34566788888887775 237888
Q ss_pred EEEee
Q 041250 212 IIKDM 216 (259)
Q Consensus 212 li~e~ 216 (259)
+|+..
T Consensus 341 ~iit~ 345 (385)
T 3ldu_A 341 YLITS 345 (385)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 77754
No 248
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.62 E-value=4.4e-08 Score=88.56 Aligned_cols=110 Identities=12% Similarity=0.128 Sum_probs=81.2
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-C--CC-
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-A--IS- 172 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~~- 172 (259)
+...++ .....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ...++.++.+|..+ + .+
T Consensus 97 ~~~~L~--~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~ 174 (456)
T 3m4x_A 97 VGTAAA--AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSG 174 (456)
T ss_dssp HHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTT
T ss_pred HHHHcC--CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccc
Confidence 344445 556789999999999999999998654 68999999 778877765 45689999999876 2 33
Q ss_pred CccEEeehh------hh-------ccCChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 173 PAYAVLLKW------IL-------LDWNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 173 ~~D~~~~~~------vl-------h~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
.||+|++.- ++ +.|+.+. ..++|+++.+.|+| ||+|+.....+
T Consensus 175 ~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~ 237 (456)
T 3m4x_A 175 FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCTF 237 (456)
T ss_dssp CEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESCC
T ss_pred cCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEeec
Confidence 599998732 22 2233222 23789999999999 89888766544
No 249
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.61 E-value=5.6e-08 Score=86.32 Aligned_cols=100 Identities=13% Similarity=0.059 Sum_probs=74.4
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----C-CC-CeEEEeCCCCC--C-C---C-CccEE
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----D-LV-NLKYVGGDMFK--A-I---S-PAYAV 177 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~~-ri~~~~~d~~~--~-~---~-~~D~~ 177 (259)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++ . .+ +++|+.+|.++ + . . .||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 346799999999999999999863 238999999 889988876 2 23 89999999987 2 1 2 59999
Q ss_pred eehhhh-----ccCCh--HHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 178 LLKWIL-----LDWND--EECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 178 ~~~~vl-----h~~~d--~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
++.... +...+ +...++++.+.+.|+| ||.+++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~~ 332 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIASTN 332 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence 985332 22222 3345688899999999 787766653
No 250
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.60 E-value=6.9e-08 Score=85.99 Aligned_cols=100 Identities=11% Similarity=-0.010 Sum_probs=76.2
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----C--CCCeEEEeCCCCCC-------CCCccEE
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----D--LVNLKYVGGDMFKA-------ISPAYAV 177 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~--~~ri~~~~~d~~~~-------~~~~D~~ 177 (259)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++ . .++++++.+|+++. ...||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 346799999999999999999874 458999999 888888876 2 23899999999872 1259999
Q ss_pred eehhhhccCC-------hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 178 LLKWILLDWN-------DEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 178 ~~~~vlh~~~-------d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
++.......+ ......++.++.+.|+| ||.+++...
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 340 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNE---GGILLTFSC 340 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence 9864221111 13456899999999999 888777654
No 251
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.59 E-value=1.4e-07 Score=80.35 Aligned_cols=94 Identities=12% Similarity=0.026 Sum_probs=68.3
Q ss_pred cCCCCeEEEecC------CchHHHHHHHHHCC-CCeEEEeechHHHhhcccCCCCeEE-EeCCCCC-CCC-CccEEeehh
Q 041250 112 FEGLNSLVDVGG------GTGTAAKAIAKAFP-KLECTCFDLPHVVNGLESDLVNLKY-VGGDMFK-AIS-PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGg------G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~ri~~-~~~d~~~-~~~-~~D~~~~~~ 181 (259)
+....+|||+|| |+|. ..+++..| +.+++++|+.+.+ .++++ +.+|+.+ +.+ .||+|++..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v-------~~v~~~i~gD~~~~~~~~~fD~Vvsn~ 131 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV-------SDADSTLIGDCATVHTANKWDLIISDM 131 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB-------CSSSEEEESCGGGCCCSSCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC-------CCCEEEEECccccCCccCcccEEEEcC
Confidence 566789999999 5577 44566776 6899999994441 37899 9999988 444 599999753
Q ss_pred hhcc---C------ChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 182 ILLD---W------NDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 182 vlh~---~------~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
..+. + ..+....+++.+++.|+| ||++++..+.
T Consensus 132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~~~ 173 (290)
T 2xyq_A 132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKITE 173 (290)
T ss_dssp CCCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEECS
T ss_pred CccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEEec
Confidence 2211 0 123345799999999999 8998886543
No 252
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.59 E-value=9.7e-08 Score=81.87 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=63.9
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCC-C--C-
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFK-A--I- 171 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~--~- 171 (259)
...+++.+. .....+|||+|||+|.++..+++++|+.+++++|. +.+++.|++ ..+|++++.+|+.+ + .
T Consensus 15 l~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~ 92 (301)
T 1m6y_A 15 VREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 92 (301)
T ss_dssp HHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence 455666666 56678999999999999999999999889999999 899988876 22799999999876 2 1
Q ss_pred ----CCccEEeeh
Q 041250 172 ----SPAYAVLLK 180 (259)
Q Consensus 172 ----~~~D~~~~~ 180 (259)
..+|.|++.
T Consensus 93 ~~g~~~~D~Vl~D 105 (301)
T 1m6y_A 93 TLGIEKVDGILMD 105 (301)
T ss_dssp HTTCSCEEEEEEE
T ss_pred hcCCCCCCEEEEc
Confidence 358988864
No 253
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.58 E-value=6.7e-08 Score=87.40 Aligned_cols=109 Identities=13% Similarity=0.007 Sum_probs=80.7
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-------------CCCeEEEeec-hHHHhhccc-----CCC--CeE
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-------------PKLECTCFDL-PHVVNGLES-----DLV--NLK 161 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~-----~~~--ri~ 161 (259)
.+++.+. .....+|+|.|||+|.++..+.+.. +..+++++|+ |.++..|+. ... ++.
T Consensus 162 ~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 162 AMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 3444443 3445789999999999999998763 4567999999 888888775 222 788
Q ss_pred EEeCCCCC-CCC-CccEEeehhhhccCCh-H--------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 162 YVGGDMFK-AIS-PAYAVLLKWILLDWND-E--------------ECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 162 ~~~~d~~~-~~~-~~D~~~~~~vlh~~~d-~--------------~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+..+|.+. +.. .||+|+....++.... + ....+++++.+.|+| ||++.++-+
T Consensus 240 i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p 308 (445)
T 2okc_A 240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 308 (445)
T ss_dssp EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred EeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEEC
Confidence 99999998 433 6999998866554221 1 124789999999999 899977764
No 254
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.56 E-value=1.4e-07 Score=83.99 Aligned_cols=101 Identities=14% Similarity=0.068 Sum_probs=73.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----CCCCeEEEeCCCCCC---CC-CccEEeehhhhc
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----DLVNLKYVGGDMFKA---IS-PAYAVLLKWILL 184 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~---~~-~~D~~~~~~vlh 184 (259)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ ..-..++..+|.++. .+ .||+|++.....
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 36799999999999999999974 45999999 888888876 122235678998872 22 499999864321
Q ss_pred cCCh-------HHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 185 DWND-------EECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 185 ~~~d-------~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
..+. ..-.++++.+.+.|+| ||.|+++.....
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~s~~ 330 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSCSYH 330 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence 1111 2235789999999999 898887776443
No 255
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.55 E-value=1.8e-07 Score=78.16 Aligned_cols=86 Identities=21% Similarity=0.282 Sum_probs=64.6
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCC-CCCC-c-c
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK-AISP-A-Y 175 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~-~~~~-~-D 175 (259)
...+++.++ .....+|||||||+|.++..++++ +..+++++|+ +.+++.+++ ...+++++.+|+.+ +++. + +
T Consensus 20 ~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 96 (249)
T 3ftd_A 20 LKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKE 96 (249)
T ss_dssp HHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSS
T ss_pred HHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCC
Confidence 345566666 566789999999999999999987 4578999999 888888876 35689999999998 5553 1 4
Q ss_pred EEeehhhhccCChH
Q 041250 176 AVLLKWILLDWNDE 189 (259)
Q Consensus 176 ~~~~~~vlh~~~d~ 189 (259)
..++.+.-++.+..
T Consensus 97 ~~vv~NlPy~i~~~ 110 (249)
T 3ftd_A 97 LKVVGNLPYNVASL 110 (249)
T ss_dssp EEEEEECCTTTHHH
T ss_pred cEEEEECchhccHH
Confidence 45666655554443
No 256
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.54 E-value=2.5e-07 Score=78.16 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=67.5
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC-CCC---Cc
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK-AIS---PA 174 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~---~~ 174 (259)
..+++..+ .... +|||||||+|.++..++++. .+++++|+ +.+++.+++ ..++++++.+|+.+ +++ .+
T Consensus 37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 44555555 5556 99999999999999999985 57999999 888888876 34789999999998 554 35
Q ss_pred cEEeehhhhccCChHHHHHHHHH
Q 041250 175 YAVLLKWILLDWNDEECVKILKK 197 (259)
Q Consensus 175 D~~~~~~vlh~~~d~~~~~il~~ 197 (259)
|. ++++.-++.+..-..++|..
T Consensus 112 ~~-iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SL-LVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EE-EEEEECSSCCHHHHHHHHHH
T ss_pred cE-EEecCcccccHHHHHHHhcC
Confidence 65 45555666666555555543
No 257
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.51 E-value=1.5e-07 Score=82.18 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=71.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CC------------CCeEEEeCCCCC--C-----C
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DL------------VNLKYVGGDMFK--A-----I 171 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~------------~ri~~~~~d~~~--~-----~ 171 (259)
+++.+|||||||+|..+.++++..| .+++++|+ |.+++.|++ .. +|++++.+|.++ . .
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 4578999999999999999988765 78999999 899998887 11 289999999987 2 1
Q ss_pred CCccEEeehhhh-c-cCCh--HHHHHHHHHH----HHhcccCCCCcEEEEEe
Q 041250 172 SPAYAVLLKWIL-L-DWND--EECVKILKKC----KEAITRDGKKRKVIIKD 215 (259)
Q Consensus 172 ~~~D~~~~~~vl-h-~~~d--~~~~~il~~~----~~~L~p~~~gg~lli~e 215 (259)
..||+|++--.- . .... -.....++.+ +++|+| ||.+++.-
T Consensus 266 ~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~p---gGilv~qs 314 (364)
T 2qfm_A 266 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQG 314 (364)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred CCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCC---CcEEEEEc
Confidence 259999886422 1 0011 0123455555 899999 77665553
No 258
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.50 E-value=4.5e-07 Score=81.66 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=65.9
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCC-----C--CccEEe
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAI-----S--PAYAVL 178 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~-----~--~~D~~~ 178 (259)
..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|++ ...+++|+.+|+.+.. + .||+|+
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 455679999999999999999988 578999999 889988876 3358999999998732 2 489998
Q ss_pred ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
+.---.. +..+++.+.+ ++| ++.+++
T Consensus 362 ~dPPr~g-----~~~~~~~l~~-~~p---~~ivyv 387 (433)
T 1uwv_A 362 LDPARAG-----AAGVMQQIIK-LEP---IRIVYV 387 (433)
T ss_dssp ECCCTTC-----CHHHHHHHHH-HCC---SEEEEE
T ss_pred ECCCCcc-----HHHHHHHHHh-cCC---CeEEEE
Confidence 7432221 1234555543 677 454443
No 259
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.45 E-value=1.8e-07 Score=78.19 Aligned_cols=91 Identities=9% Similarity=0.091 Sum_probs=63.0
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC---CCCeEEEeCCCCC-CCCC--
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD---LVNLKYVGGDMFK-AISP-- 173 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~~-- 173 (259)
...+++.++ .....+|||||||+|.++. +. +.++.+++++|+ +.+++.+++. .++++++.+|+.+ +++.
T Consensus 10 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~ 85 (252)
T 1qyr_A 10 IDSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhh
Confidence 345566665 5667899999999999999 64 455445999999 8999988872 2589999999988 5442
Q ss_pred ----ccEEeehhhhccCChHHHHHHH
Q 041250 174 ----AYAVLLKWILLDWNDEECVKIL 195 (259)
Q Consensus 174 ----~D~~~~~~vlh~~~d~~~~~il 195 (259)
.+.+++++.-++.+.....+++
T Consensus 86 ~~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 86 EKMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred cccCCceEEEECCCCCccHHHHHHHH
Confidence 2345555555555444333333
No 260
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.43 E-value=1e-07 Score=80.87 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=56.1
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCC--CeEEEeec-hHHHhhcccC-CCCeEEEeCCCCC-CCC
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPK--LECTCFDL-PHVVNGLESD-LVNLKYVGGDMFK-AIS 172 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~-~~~ 172 (259)
..+++.++ .....+|||||||+|.++..++++.+. .+++++|+ +.+++.+++. .++++++.+|+.+ +++
T Consensus 32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 44555555 566789999999999999999998654 55999999 8888888763 5789999999998 554
No 261
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.43 E-value=8.6e-07 Score=79.62 Aligned_cols=91 Identities=12% Similarity=0.083 Sum_probs=67.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCCCC-CccEEeehhhhcc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKAIS-PAYAVLLKWILLD 185 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~ 185 (259)
.+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|++ ... ++|+.+|+.+..+ .||+|++...-..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 44679999999999999999987 458999999 889988876 234 9999999998444 6999998543222
Q ss_pred CChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 186 WNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
.. + .+++.+. .++| +|.+++.
T Consensus 366 ~~-~---~~~~~l~-~l~p---~givyvs 386 (425)
T 2jjq_A 366 LH-P---RLVKRLN-REKP---GVIVYVS 386 (425)
T ss_dssp SC-H---HHHHHHH-HHCC---SEEEEEE
T ss_pred hH-H---HHHHHHH-hcCC---CcEEEEE
Confidence 22 1 3455444 4898 7766664
No 262
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.43 E-value=6.5e-07 Score=85.30 Aligned_cols=99 Identities=9% Similarity=0.081 Sum_probs=75.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------CC-CCeEEEeCCCCCC---CC-CccEEeehh
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------DL-VNLKYVGGDMFKA---IS-PAYAVLLKW 181 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~d~~~~---~~-~~D~~~~~~ 181 (259)
...+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .. ++++++.+|.++. .. .||+|++..
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 45799999999999999998853 236999999 888988876 22 5899999999872 22 599999854
Q ss_pred hhc--------cCC-hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 182 ILL--------DWN-DEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 182 vlh--------~~~-d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
... .+. ...-.++++.+.+.|+| ||.|++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 221 122 13456789999999999 888775543
No 263
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.42 E-value=2.8e-07 Score=77.17 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=56.1
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC-CCC
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK-AIS 172 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~ 172 (259)
...+++..+ .....+|||||||+|.++..++++. .+++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus 18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 18 LQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 345666666 6667899999999999999999884 68999999 889988876 34799999999998 543
No 264
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.39 E-value=8.1e-07 Score=75.55 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=76.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----------CCCCeEEEeCCCCCCC----CCccE
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----------DLVNLKYVGGDMFKAI----SPAYA 176 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~d~~~~~----~~~D~ 176 (259)
.+++.+||=||||.|..+.++++..|..+++++|+ |.+++.+++ ..+|++++.+|.++-. ..||+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 35678999999999999999998777778999999 999998876 3589999999999822 25999
Q ss_pred EeehhhhccCChH--HHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 177 VLLKWILLDWNDE--ECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 177 ~~~~~vlh~~~d~--~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
|++-..=-.-+.+ -....++.++++|+| ||.++..
T Consensus 161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q 197 (294)
T 3o4f_A 161 IISDCTDPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQ 197 (294)
T ss_dssp EEESCCCCCCTTCCSSCCHHHHHHHHTEEE---EEEEEEE
T ss_pred EEEeCCCcCCCchhhcCHHHHHHHHHHhCC---CCEEEEe
Confidence 9865321100110 123689999999999 7766654
No 265
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.38 E-value=6.1e-06 Score=72.65 Aligned_cols=103 Identities=18% Similarity=0.237 Sum_probs=73.1
Q ss_pred CCeEEEecCCchHHHHHH--------HHHC-------CCCeEEEeechHH--------Hhhccc----------C---CC
Q 041250 115 LNSLVDVGGGTGTAAKAI--------AKAF-------PKLECTCFDLPHV--------VNGLES----------D---LV 158 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l--------~~~~-------p~~~~~~~D~~~~--------~~~a~~----------~---~~ 158 (259)
..+|+|+|||+|..+..+ .+++ |.+++..-|+|.- ++..++ . .-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 578999999999998887 3333 7889999999621 122211 0 01
Q ss_pred CeEEEeCCCCC-CCC--CccEEeehhhhccCCh------------------------------------HHHHHHHHHHH
Q 041250 159 NLKYVGGDMFK-AIS--PAYAVLLKWILLDWND------------------------------------EECVKILKKCK 199 (259)
Q Consensus 159 ri~~~~~d~~~-~~~--~~D~~~~~~vlh~~~d------------------------------------~~~~~il~~~~ 199 (259)
=+.-+++.|.. .+| .+|+++.+.+||-.++ .+-..+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13446788888 566 5999999999996551 13345799999
Q ss_pred HhcccCCCCcEEEEEeeeecC
Q 041250 200 EAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 200 ~~L~p~~~gg~lli~e~~~~~ 220 (259)
+.|+| ||++++.-...++
T Consensus 213 ~eL~p---GG~mvl~~~gr~~ 230 (374)
T 3b5i_A 213 AEVKR---GGAMFLVCLGRTS 230 (374)
T ss_dssp HHEEE---EEEEEEEEEECCC
T ss_pred HHhCC---CCEEEEEEecCCC
Confidence 99999 8988877776554
No 266
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.36 E-value=1.5e-06 Score=82.89 Aligned_cols=110 Identities=11% Similarity=0.022 Sum_probs=79.2
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHH------------------------------------------CCCC
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA------------------------------------------FPKL 139 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~------------------------------------------~p~~ 139 (259)
..++.... +.+..+|+|.+||+|.++++.+.. .|+.
T Consensus 180 a~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 180 AAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 44555555 556778999999999999998864 2346
Q ss_pred eEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-CCC----CccEEeehhhhcc-C-ChHHHHHHHHHHHHhcc--
Q 041250 140 ECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-AIS----PAYAVLLKWILLD-W-NDEECVKILKKCKEAIT-- 203 (259)
Q Consensus 140 ~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~----~~D~~~~~~vlh~-~-~d~~~~~il~~~~~~L~-- 203 (259)
+++++|+ +.+++.|++ ..++|+|..+|+.+ ..| .+|+|+++--... + .+++...+.+.+.+.++
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 8999999 999998887 34679999999987 222 5899998854332 2 23445566666655554
Q ss_pred -cCCCCcEEEEEee
Q 041250 204 -RDGKKRKVIIKDM 216 (259)
Q Consensus 204 -p~~~gg~lli~e~ 216 (259)
| ||+++|+..
T Consensus 338 ~~---g~~~~ilt~ 348 (703)
T 3v97_A 338 FG---GWNLSLFSA 348 (703)
T ss_dssp CT---TCEEEEEES
T ss_pred CC---CCeEEEEeC
Confidence 6 899888754
No 267
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.29 E-value=8.2e-07 Score=83.04 Aligned_cols=123 Identities=10% Similarity=0.052 Sum_probs=81.3
Q ss_pred hhcCchHHHHHHHHHHhcchhhhHHHHHhcccc--cCCCCeEEEecCCchHHHHHHHH---H-CCCCeEEEeechHHHhh
Q 041250 79 AGDESKLNNFFNEAMASDARLATSVMIQKCKNV--FEGLNSLVDVGGGTGTAAKAIAK---A-FPKLECTCFDLPHVVNG 152 (259)
Q Consensus 79 l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~~~~vlDvGgG~G~~~~~l~~---~-~p~~~~~~~D~~~~~~~ 152 (259)
++++|-.-+.|.+|+.. .+.+..... ..+...|+|||||+|-++...++ + .-++++..++-.++...
T Consensus 327 FEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~ 399 (637)
T 4gqb_A 327 FEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVV 399 (637)
T ss_dssp HTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHH
T ss_pred hcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHH
Confidence 44555555566665532 233322211 12345799999999999544433 3 23347889998556655
Q ss_pred ccc------CCCCeEEEeCCCCC-CCC-CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEE
Q 041250 153 LES------DLVNLKYVGGDMFK-AIS-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKV 211 (259)
Q Consensus 153 a~~------~~~ri~~~~~d~~~-~~~-~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~l 211 (259)
+++ ..++|+++.+|+.+ ..| ++|+++.-+.=+..-.|-...+|-...+-|+| ||.+
T Consensus 400 a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP---gGim 463 (637)
T 4gqb_A 400 TLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD---DGVS 463 (637)
T ss_dssp HHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE---EEEE
T ss_pred HHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC---CcEE
Confidence 554 67999999999999 777 69999877655555455566777777788999 7754
No 268
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=98.26 E-value=2.6e-05 Score=67.72 Aligned_cols=104 Identities=16% Similarity=0.153 Sum_probs=87.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhccc----C----------------------CCCeEEEeCC
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES----D----------------------LVNLKYVGGD 166 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~----------------------~~ri~~~~~d 166 (259)
.+...||.+|||.......+...+|+++++-+|+|++++.-++ . .++..++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3567899999999999999999989999999999998876544 1 3789999999
Q ss_pred CCC-CC----------C-CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecC
Q 041250 167 MFK-AI----------S-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 167 ~~~-~~----------~-~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
+.+ .+ + ...+++.--+|++++.+++.++|+.+.+.. | +|.+++.|.+.+.
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~e~i~~~ 237 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISYDPIGGS 237 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEEEECCCC
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEEeccCCC
Confidence 987 32 1 256778889999999999999999999987 5 6888899998873
No 269
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.23 E-value=2.1e-06 Score=71.97 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=55.7
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-h-------HHHhhccc------CCCCeEEEeCCCCC--C-C---
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-P-------HVVNGLES------DLVNLKYVGGDMFK--A-I--- 171 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~------~~~ri~~~~~d~~~--~-~--- 171 (259)
.....+|||+|||+|..+..+++. +.+++++|+ | .+++.+++ ...|++++.+|..+ + +
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 444578999999999999999996 568999999 7 77777765 23579999999976 2 2
Q ss_pred -CCccEEeehhhhcc
Q 041250 172 -SPAYAVLLKWILLD 185 (259)
Q Consensus 172 -~~~D~~~~~~vlh~ 185 (259)
..||+|++...++.
T Consensus 159 ~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPE 173 (258)
T ss_dssp HCCCSEEEECCCC--
T ss_pred CCCccEEEECCCCCC
Confidence 35999998655443
No 270
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=98.20 E-value=2.9e-06 Score=74.99 Aligned_cols=93 Identities=12% Similarity=0.014 Sum_probs=72.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C---------------C-CCeEEEeCCCCCC--
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D---------------L-VNLKYVGGDMFKA-- 170 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~---------------~-~ri~~~~~d~~~~-- 170 (259)
...+|||+|||+|..++.++++.|..+++++|+ +.+++.+++ . . .+++++.+|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 367899999999999999999988889999999 888887775 2 2 2389999998762
Q ss_pred -CC-CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 171 -IS-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 171 -~~-~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
.+ .||+|++.- . .. ...++..+.+.++| ||.+++.-
T Consensus 127 ~~~~~fD~I~lDP-~--~~---~~~~l~~a~~~lk~---gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F--GS---PMEFLDTALRSAKR---RGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-S--SC---CHHHHHHHHHHEEE---EEEEEEEE
T ss_pred hccCCCCEEEeCC-C--CC---HHHHHHHHHHhcCC---CCEEEEEe
Confidence 23 599998543 1 11 24688999999999 88766653
No 271
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.20 E-value=1.2e-05 Score=70.84 Aligned_cols=141 Identities=11% Similarity=0.118 Sum_probs=86.5
Q ss_pred CCeEEEecCCchHHHHHHHHH-----------------CCCCeEEEeech-----------H-HHhhccc-CC--CCeE-
Q 041250 115 LNSLVDVGGGTGTAAKAIAKA-----------------FPKLECTCFDLP-----------H-VVNGLES-DL--VNLK- 161 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~-~~~~a~~-~~--~ri~- 161 (259)
.-+|+|+|||+|..+..+... .|.++++.-|+| + ..+..++ .. .+-.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999999988766 577889999997 1 1111111 11 1223
Q ss_pred --EEeCCCCC-CCC--CccEEeehhhhccCChH-------------------------HHH------------HHHHHHH
Q 041250 162 --YVGGDMFK-AIS--PAYAVLLKWILLDWNDE-------------------------ECV------------KILKKCK 199 (259)
Q Consensus 162 --~~~~d~~~-~~~--~~D~~~~~~vlh~~~d~-------------------------~~~------------~il~~~~ 199 (259)
-+++.|+. .+| .+|+++.+.+||-.++- .+. .+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678887 566 49999999999943321 122 2378889
Q ss_pred HhcccCCCCcEEEEEeeeecCC--CCCchhhhhhhhhhhhhhh----------ccCccccCHHHHHHHHhc
Q 041250 200 EAITRDGKKRKVIIKDMIKENR--KKDYKSIETQLFFEMFMMV----------LLTGTERDEKEWAKIFAD 258 (259)
Q Consensus 200 ~~L~p~~~gg~lli~e~~~~~~--~~~~~~~~~~~~~d~~m~~----------~~~g~~rt~~e~~~ll~~ 258 (259)
+.|+| ||++++.-...+.. ...........+.++..-- ..--..++.+|++.++++
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~ 280 (384)
T 2efj_A 213 EELIS---RGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEE 280 (384)
T ss_dssp HHEEE---EEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHH
T ss_pred HHhcc---CCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHH
Confidence 99999 88887777655443 2110000112233321110 012345889999999875
No 272
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.18 E-value=1.7e-06 Score=76.21 Aligned_cols=89 Identities=9% Similarity=0.107 Sum_probs=65.7
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCCC---C--------------
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFKA---I-------------- 171 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~---~-------------- 171 (259)
..+|||+|||+|.++..+++.. .+++++|+ +.+++.|++ ..++++|+.+|..+. .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 4689999999999999988753 48999999 889988876 346899999998761 1
Q ss_pred --CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 172 --SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 172 --~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
..||+|++..--. .+..++.+.|++ +|+|+.+..
T Consensus 292 ~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~---~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVDPPRS--------GLDSETEKMVQA---YPRILYISC 327 (369)
T ss_dssp GGCCEEEEEECCCTT--------CCCHHHHHHHTT---SSEEEEEES
T ss_pred ccCCCCEEEECcCcc--------ccHHHHHHHHhC---CCEEEEEEC
Confidence 1589988743211 233445555667 788887764
No 273
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=98.12 E-value=1.5e-05 Score=68.56 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=55.6
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-----CCCCeEEEeCCCCC-CC-----CCccEEe
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI-----SPAYAVL 178 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~-----~~~D~~~ 178 (259)
.....+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ...+++++.+|+.+ +. ..||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 5567899999999999999999874 5679999999 788877765 34689999999876 21 2589998
Q ss_pred e
Q 041250 179 L 179 (259)
Q Consensus 179 ~ 179 (259)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 7
No 274
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=98.05 E-value=1.3e-05 Score=74.04 Aligned_cols=108 Identities=11% Similarity=0.011 Sum_probs=77.4
Q ss_pred HHHhcccccCCCCeEEEecCCchHHHHHHHHHCC------------------CCeEEEeec-hHHHhhccc-----CCCC
Q 041250 104 MIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP------------------KLECTCFDL-PHVVNGLES-----DLVN 159 (259)
Q Consensus 104 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~-----~~~r 159 (259)
+++.+. .....+|+|.|||+|.++..+.+... ..+++++|+ +.++..|+. ....
T Consensus 161 mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~ 238 (541)
T 2ar0_A 161 IIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 238 (541)
T ss_dssp HHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCc
Confidence 344443 34457999999999999999877531 247999999 888888775 2232
Q ss_pred -----eEEEeCCCCC-C---CCCccEEeehhhhccCC------------hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 160 -----LKYVGGDMFK-A---ISPAYAVLLKWILLDWN------------DEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 160 -----i~~~~~d~~~-~---~~~~D~~~~~~vlh~~~------------d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+.+..+|.+. + ...||+|+..-.+.... .......++++.+.|+| ||++.++-+
T Consensus 239 ~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~p 313 (541)
T 2ar0_A 239 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVVP 313 (541)
T ss_dssp BGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEec
Confidence 7899999987 3 23699999876544321 11224689999999999 899877754
No 275
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=98.05 E-value=4.2e-06 Score=74.18 Aligned_cols=93 Identities=10% Similarity=-0.030 Sum_probs=71.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCC-CeEEEeec-hHHHhhccc------CCCC-eEEEeCCCCC--C--CC-CccEEee
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPK-LECTCFDL-PHVVNGLES------DLVN-LKYVGGDMFK--A--IS-PAYAVLL 179 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~r-i~~~~~d~~~--~--~~-~~D~~~~ 179 (259)
+..+|||++||+|.+++.++++.++ .+++.+|+ +.+++.+++ ..++ ++++.+|.++ . .+ .||+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4578999999999999999998766 47999999 888888876 2345 9999999876 2 23 5999998
Q ss_pred hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
.- +..+ ..++..+.+.|+| ||.|++.-
T Consensus 132 DP--~g~~----~~~l~~a~~~Lk~---gGll~~t~ 158 (392)
T 3axs_A 132 DP--FGTP----VPFIESVALSMKR---GGILSLTA 158 (392)
T ss_dssp CC--SSCC----HHHHHHHHHHEEE---EEEEEEEE
T ss_pred CC--CcCH----HHHHHHHHHHhCC---CCEEEEEe
Confidence 75 1111 3588899999999 78665544
No 276
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.05 E-value=1e-05 Score=67.67 Aligned_cols=104 Identities=11% Similarity=0.014 Sum_probs=65.1
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhh-ccc---CCCCeEEEeCCCCC-CCC--CccEEeehhhhc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNG-LES---DLVNLKYVGGDMFK-AIS--PAYAVLLKWILL 184 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~-a~~---~~~ri~~~~~d~~~-~~~--~~D~~~~~~vlh 184 (259)
+....+|||+|||+|.++..++++.+-.+++++|+..-+.. ... ...++.....++.. .++ .+|+|++....+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apn 151 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGES 151 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccC
Confidence 56677999999999999999888766556777776311111 111 11134444444321 333 599999876555
Q ss_pred ---cCChH-HHHHHHHHHHHhcccCCCC-cEEEEEeeeec
Q 041250 185 ---DWNDE-ECVKILKKCKEAITRDGKK-RKVIIKDMIKE 219 (259)
Q Consensus 185 ---~~~d~-~~~~il~~~~~~L~p~~~g-g~lli~e~~~~ 219 (259)
.|-|+ ....+|+.+.+.|+| | |.+++ ..+.|
T Consensus 152 sG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~-KVf~p 187 (277)
T 3evf_A 152 SSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV-KVLAP 187 (277)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE-EESCT
T ss_pred cCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE-EecCC
Confidence 12232 233568889999999 8 87666 55443
No 277
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.04 E-value=4.5e-06 Score=78.33 Aligned_cols=124 Identities=12% Similarity=0.067 Sum_probs=80.5
Q ss_pred chhhcCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHH----C---------CCCeEEE
Q 041250 77 EYAGDESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA----F---------PKLECTC 143 (259)
Q Consensus 77 ~~l~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~----~---------p~~~~~~ 143 (259)
+.+++++-.-+.|.+++... +.+.... -.+...|+|||||+|-++...+++ . ...++++
T Consensus 380 e~fekD~vRy~~Y~~AI~~a-------l~d~~~~-~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyA 451 (745)
T 3ua3_A 380 NTFEQDQIKYDVYGEAVVGA-------LKDLGAD-GRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYI 451 (745)
T ss_dssp HHHHHCHHHHHHHHHHHHHH-------HHHHHTT-CCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred HHHcCChhhHHHHHHHHHHH-------HHHhhcc-cCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEE
Confidence 33455666666666665442 1111110 123468999999999997543222 1 2348999
Q ss_pred eec-hHHHhhccc-----CCCCeEEEeCCCCC-CC------C-CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCc
Q 041250 144 FDL-PHVVNGLES-----DLVNLKYVGGDMFK-AI------S-PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKR 209 (259)
Q Consensus 144 ~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~------~-~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg 209 (259)
+|- |.++...+. ..++|+++.+|+.+ .. | ++|+++.-..=++...|-....|..+.+-|+| ||
T Consensus 452 VEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp---~G 528 (745)
T 3ua3_A 452 VEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP---TT 528 (745)
T ss_dssp EECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT---TC
T ss_pred EeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC---Cc
Confidence 998 444433332 56889999999998 55 4 69999877765544556566678888889999 77
Q ss_pred EE
Q 041250 210 KV 211 (259)
Q Consensus 210 ~l 211 (259)
.+
T Consensus 529 i~ 530 (745)
T 3ua3_A 529 IS 530 (745)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 278
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.03 E-value=3.4e-05 Score=67.44 Aligned_cols=143 Identities=11% Similarity=0.087 Sum_probs=88.2
Q ss_pred CCCCeEEEecCCchHHHHHHHHH----------------CCCCeEEEeech-HHHhhccc-CC-----CC---eEEEeCC
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKA----------------FPKLECTCFDLP-HVVNGLES-DL-----VN---LKYVGGD 166 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~----------------~p~~~~~~~D~~-~~~~~a~~-~~-----~r---i~~~~~d 166 (259)
++.-+|+|+||++|..+..+... .|.++++.-|+| ......-+ .. .+ +.-+++.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 44568999999999776654332 577789999995 22222222 11 12 2336788
Q ss_pred CCC-CCC--CccEEeehhhhccCCh-------------------------------HHHHHHHHHHHHhcccCCCCcEEE
Q 041250 167 MFK-AIS--PAYAVLLKWILLDWND-------------------------------EECVKILKKCKEAITRDGKKRKVI 212 (259)
Q Consensus 167 ~~~-~~~--~~D~~~~~~vlh~~~d-------------------------------~~~~~il~~~~~~L~p~~~gg~ll 212 (259)
|+. .+| .+|+++.+..||-.++ .+-..+|+..++.|+| ||+++
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mv 206 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMV 206 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEE
Confidence 888 566 4999999999994432 1234569999999999 99988
Q ss_pred EEeeeecCCCCCch-----hh-hhhhhhhhhhhh----------ccCccccCHHHHHHHHhc
Q 041250 213 IKDMIKENRKKDYK-----SI-ETQLFFEMFMMV----------LLTGTERDEKEWAKIFAD 258 (259)
Q Consensus 213 i~e~~~~~~~~~~~-----~~-~~~~~~d~~m~~----------~~~g~~rt~~e~~~ll~~ 258 (259)
+.-...+....... +. ...++.|+..-- ..--..++.+|++.++++
T Consensus 207 l~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~ 268 (359)
T 1m6e_X 207 LTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILK 268 (359)
T ss_dssp EEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHH
T ss_pred EEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHH
Confidence 87776655421100 00 011222221110 012356889999999876
No 279
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.02 E-value=1.7e-05 Score=60.07 Aligned_cols=85 Identities=21% Similarity=0.200 Sum_probs=60.0
Q ss_pred cCCCCeEEEecCCch-HHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCC----CccEEeehhhhcc
Q 041250 112 FEGLNSLVDVGGGTG-TAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAIS----PAYAVLLKWILLD 185 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~----~~D~~~~~~vlh~ 185 (259)
.....++||||||+| ..+..|++. .+..+++.|+ |..++ ++..|+|+|.. +||+|...+
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~----------~v~dDiF~P~~~~Y~~~DLIYsir---- 97 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG----------IVRDDITSPRMEIYRGAALIYSIR---- 97 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT----------EECCCSSSCCHHHHTTEEEEEEES----
T ss_pred CCCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc----------eEEccCCCCcccccCCcCEEEEcC----
Confidence 344679999999999 688888874 2688999998 65554 88899999654 689886553
Q ss_pred CChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 186 WNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
|+.+...-+.++++.. |.-++|.-..
T Consensus 98 -PP~El~~~i~~lA~~v-----~adliI~pL~ 123 (153)
T 2k4m_A 98 -PPAEIHSSLMRVADAV-----GARLIIKPLT 123 (153)
T ss_dssp -CCTTTHHHHHHHHHHH-----TCEEEEECBT
T ss_pred -CCHHHHHHHHHHHHHc-----CCCEEEEcCC
Confidence 3344555566666665 3556665443
No 280
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=97.94 E-value=9.6e-06 Score=67.97 Aligned_cols=107 Identities=17% Similarity=0.138 Sum_probs=68.2
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeech-HHHhhccc---CCCC-eEEEeC-CCCC-CCCC
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLP-HVVNGLES---DLVN-LKYVGG-DMFK-AISP 173 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~---~~~r-i~~~~~-d~~~-~~~~ 173 (259)
...+.+.+. +....+|||+|||.|.++..++++.+-.+++++|+. .....+.. ...+ +.+... |++. +...
T Consensus 79 L~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~ 156 (282)
T 3gcz_A 79 LRWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIP 156 (282)
T ss_dssp HHHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCC
Confidence 345556653 666779999999999999999988776678888883 22111111 1223 334333 5443 2225
Q ss_pred ccEEeehhhhccCC----hH-HHHHHHHHHHHhcccCCCC--cEEEE
Q 041250 174 AYAVLLKWILLDWN----DE-ECVKILKKCKEAITRDGKK--RKVII 213 (259)
Q Consensus 174 ~D~~~~~~vlh~~~----d~-~~~~il~~~~~~L~p~~~g--g~lli 213 (259)
+|+|++-...+ -. |+ ....+|+-+.+.|+| | |.+++
T Consensus 157 ~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~ 199 (282)
T 3gcz_A 157 GDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCI 199 (282)
T ss_dssp CSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEE
T ss_pred cCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEE
Confidence 99999876665 21 22 233568888899999 7 77655
No 281
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.82 E-value=2.3e-05 Score=65.55 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=58.7
Q ss_pred HHHHHhcccccCCC--CeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHH-------Hhhccc----C--C-CCeEEEe
Q 041250 102 SVMIQKCKNVFEGL--NSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHV-------VNGLES----D--L-VNLKYVG 164 (259)
Q Consensus 102 ~~~~~~~~~~~~~~--~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~----~--~-~ri~~~~ 164 (259)
..+.+.+. ..+. .+|||+|||+|..+..++++ +.+++++|. |.+ ++.+++ . . .|++++.
T Consensus 76 e~l~~al~--l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~ 151 (258)
T 2oyr_A 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (258)
T ss_dssp SHHHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred HHHHHHhc--ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE
Confidence 44555555 5555 79999999999999999998 568999999 544 333321 1 1 6899999
Q ss_pred CCCCC--C-CC-CccEEeehhhhcc
Q 041250 165 GDMFK--A-IS-PAYAVLLKWILLD 185 (259)
Q Consensus 165 ~d~~~--~-~~-~~D~~~~~~vlh~ 185 (259)
+|..+ + .+ .||+|++...++.
T Consensus 152 ~D~~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 152 ASSLTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp SCHHHHSTTCSSCCSEEEECCCCCC
T ss_pred CCHHHHHHhCcccCCEEEEcCCCCC
Confidence 99876 2 33 5999999876654
No 282
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.82 E-value=3.9e-05 Score=64.53 Aligned_cols=77 Identities=17% Similarity=0.130 Sum_probs=61.8
Q ss_pred hhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEeCCCCC-C--C---
Q 041250 100 ATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGGDMFK-A--I--- 171 (259)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~-~--~--- 171 (259)
....+++.+. ......+||.+||.|..+..++++ +.+++++|. |.+++.+++. .+|++++.+||.+ + .
T Consensus 10 Ll~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~ 85 (285)
T 1wg8_A 10 LYQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 85 (285)
T ss_dssp THHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHc
Confidence 4566777777 667789999999999999999998 779999999 8899888761 2689999999976 2 1
Q ss_pred --CCccEEeeh
Q 041250 172 --SPAYAVLLK 180 (259)
Q Consensus 172 --~~~D~~~~~ 180 (259)
.++|.|++.
T Consensus 86 g~~~vDgIL~D 96 (285)
T 1wg8_A 86 GVERVDGILAD 96 (285)
T ss_dssp TCSCEEEEEEE
T ss_pred CCCCcCEEEeC
Confidence 247877753
No 283
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.80 E-value=3.3e-05 Score=67.72 Aligned_cols=97 Identities=15% Similarity=0.085 Sum_probs=71.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-------------CCCCeEEEeCCCCCC-------CC
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-------------DLVNLKYVGGDMFKA-------IS 172 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~ri~~~~~d~~~~-------~~ 172 (259)
++.+||=||||.|..+.++++ +|.-+++++|+ |.+++.+++ ..+|++++.+|.++- ..
T Consensus 205 ~pkrVLIIGgGdG~~~revlk-h~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVK-LKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHT-TCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHh-cCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 357999999999999999987 45578999999 999998876 135799999998751 12
Q ss_pred CccEEeehhhhcc-------CC-hHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 173 PAYAVLLKWILLD-------WN-DEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 173 ~~D~~~~~~vlh~-------~~-d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
.||+|++--.=.. .. ..-...+++.++++|+| ||.++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEEe
Confidence 5999987521110 01 12235789999999999 7765543
No 284
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.77 E-value=2.1e-05 Score=72.63 Aligned_cols=99 Identities=13% Similarity=0.026 Sum_probs=71.4
Q ss_pred CCeEEEecCCchHHHHHHHHHCC---------------CCeEEEeec-hHHHhhccc------CCCCeEEEeCCCCC-C-
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFP---------------KLECTCFDL-PHVVNGLES------DLVNLKYVGGDMFK-A- 170 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~- 170 (259)
..+|+|.+||+|.++..+.+..+ +.++.++|+ +.++..|+. ...++.+..+|.+. +
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~ 324 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ 324 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence 34999999999999998865432 468999999 888888775 23455558899887 3
Q ss_pred CC--CccEEeehhhhc--cCChHH-------------------------HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 171 IS--PAYAVLLKWILL--DWNDEE-------------------------CVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 171 ~~--~~D~~~~~~vlh--~~~d~~-------------------------~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.+ .||+|+.+--+. .|..+. ....++.+.+.|+| ||++.++-+
T Consensus 325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~aiVlP 396 (544)
T 3khk_A 325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---TGSMALLLA 396 (544)
T ss_dssp CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---CceEEEEec
Confidence 22 599999875443 232211 12578999999999 899876643
No 285
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.71 E-value=0.0001 Score=70.30 Aligned_cols=101 Identities=12% Similarity=0.073 Sum_probs=70.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCC---CCeEEEeec-hHHHhhc--cc---------CCCCeEEEeCCCCCC----CCC
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFP---KLECTCFDL-PHVVNGL--ES---------DLVNLKYVGGDMFKA----ISP 173 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~~---------~~~ri~~~~~d~~~~----~~~ 173 (259)
....+|+|.|||+|.++.++++..+ ..+++++|+ +.++..| +. ..+...+...|++.+ ..+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3467999999999999999999876 347999999 7777777 22 112245666677762 235
Q ss_pred ccEEeehhhhcc-CChH-H-------------------------HHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 174 AYAVLLKWILLD-WNDE-E-------------------------CVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 174 ~D~~~~~~vlh~-~~d~-~-------------------------~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
||+|+..--.-. +..+ . ...+++.+.+.|+| ||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 999998754421 2211 1 22367888999999 898876654
No 286
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.69 E-value=2.2e-05 Score=69.89 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=54.8
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc----C--C-CCeEEEeCCCCCC--C---CCccEEe
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES----D--L-VNLKYVGGDMFKA--I---SPAYAVL 178 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~-~ri~~~~~d~~~~--~---~~~D~~~ 178 (259)
+....+|||+|||+|..+..+++. ..+++++|+ +.+++.|++ . . ++++++.+|+++. . ..||+|+
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~ 168 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY 168 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred cCCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEE
Confidence 333689999999999999999887 468999999 888888876 2 2 6899999999873 2 2599999
Q ss_pred eh
Q 041250 179 LK 180 (259)
Q Consensus 179 ~~ 180 (259)
+.
T Consensus 169 lD 170 (410)
T 3ll7_A 169 VD 170 (410)
T ss_dssp EC
T ss_pred EC
Confidence 84
No 287
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.68 E-value=0.0003 Score=61.42 Aligned_cols=95 Identities=12% Similarity=0.065 Sum_probs=66.4
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHHHhhcccCCCCeEEEeCCCCCC-CC--CccEEeehhhhccCCh
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHVVNGLESDLVNLKYVGGDMFKA-IS--PAYAVLLKWILLDWND 188 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~-~~--~~D~~~~~~vlh~~~d 188 (259)
+..+.++||+||++|.++..++++ +.+++++|..++-.... ..++|+++.+|.++. .+ ++|++++-.+. +.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~-~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~---~p 282 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLM-DTGQVTWLREDGFKFRPTRSNISWMVCDMVE---KP 282 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHH-TTTCEEEECSCTTTCCCCSSCEEEEEECCSS---CH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhc-cCCCeEEEeCccccccCCCCCcCEEEEcCCC---Ch
Confidence 566789999999999999999988 67999999744333332 567999999999983 22 48998886654 33
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 189 EECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 189 ~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
.....++.+....... ++.|+.+.
T Consensus 283 ~~~~~l~~~wl~~~~~---~~aI~~lK 306 (375)
T 4auk_A 283 AKVAALMAQWLVNGWC---RETIFNLK 306 (375)
T ss_dssp HHHHHHHHHHHHTTSC---SEEEEEEE
T ss_pred HHhHHHHHHHHhcccc---ceEEEEEE
Confidence 4444555555444443 35444444
No 288
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.62 E-value=0.00043 Score=59.39 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=79.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeechHHHhhccc--------CCCCeEEEeCCCCCCCC------C----
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFP-KLECTCFDLPHVVNGLES--------DLVNLKYVGGDMFKAIS------P---- 173 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~~~~------~---- 173 (259)
.+...||++|||-=.....+. .| +++++-+|.|.+++..++ ..++..++..|+.+.+. +
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS 178 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred hCCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence 455789999999988876665 34 478999999999987665 25788999999986311 1
Q ss_pred -ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 174 -AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 174 -~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
.=++++-.++|+++++++..+++.+.+.+.| |+ .++.|.+.++.
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~---gs-~l~~d~~~~~~ 223 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAV---GS-RIAVETSPLHG 223 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCT---TC-EEEEECCCTTC
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCCC---Ce-EEEEEecCCCC
Confidence 3367777899999999999999999999888 55 56677765543
No 289
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.59 E-value=0.00016 Score=66.70 Aligned_cols=100 Identities=13% Similarity=0.017 Sum_probs=74.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHC---CCCeEEEeec-hHHHhhccc-----CC--CCeEEEeCCCCCC-CC-----CccE
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAF---PKLECTCFDL-PHVVNGLES-----DL--VNLKYVGGDMFKA-IS-----PAYA 176 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-----~~--~ri~~~~~d~~~~-~~-----~~D~ 176 (259)
...+|+|.+||+|.++..+.+.. +..++.++|+ +.+...|+. .. +++.+..+|.+.. +| .||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45699999999999999999884 3678999999 888887775 22 5789999999873 32 4999
Q ss_pred Eeehhhh-ccCChH--------------------HHHHHHHHHHHhcc-cCCCCcEEEEEee
Q 041250 177 VLLKWIL-LDWNDE--------------------ECVKILKKCKEAIT-RDGKKRKVIIKDM 216 (259)
Q Consensus 177 ~~~~~vl-h~~~d~--------------------~~~~il~~~~~~L~-p~~~gg~lli~e~ 216 (259)
|+.+--+ ..|..+ .....++++.+.|+ | ||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~---gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD---NGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT---TCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC---ceeEEEEec
Confidence 9977322 123110 01247999999999 8 898866654
No 290
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=97.57 E-value=7.2e-05 Score=62.50 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=64.0
Q ss_pred CCCeEEEecCCchHHHHHHHHH-------CCC-----CeEEEeec-h---HHHh-----------hccc-----------
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKA-------FPK-----LECTCFDL-P---HVVN-----------GLES----------- 155 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~-----------~a~~----------- 155 (259)
+..+|||||+|+|..+..+++. +|+ ++++.++. | +.+. .+++
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4568999999999999887764 674 58999996 4 3322 2221
Q ss_pred --------CCCCeEEEeCCCCC--C-CC-----CccEEeehh-hhc----cCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 156 --------DLVNLKYVGGDMFK--A-IS-----PAYAVLLKW-ILL----DWNDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 156 --------~~~ri~~~~~d~~~--~-~~-----~~D~~~~~~-vlh----~~~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
...+++++.+|..+ + .+ .||+|++-- .-. .|. ..+|+.+++.|+| ||.|+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~----~~~l~~l~~~L~p---GG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWT----QNLFNAMARLARP---GGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCC----HHHHHHHHHHEEE---EEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcC----HHHHHHHHHHcCC---CcEEEE
Confidence 12467789999876 2 22 489998842 111 133 3689999999999 887664
No 291
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.56 E-value=0.00019 Score=60.55 Aligned_cols=107 Identities=12% Similarity=0.100 Sum_probs=67.4
Q ss_pred HHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechH-HHhhcc---cCC-CCeEEEeC-CCCC-CCCCc
Q 041250 102 SVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPH-VVNGLE---SDL-VNLKYVGG-DMFK-AISPA 174 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~---~~~-~ri~~~~~-d~~~-~~~~~ 174 (259)
..+.+. . .+.+..+|||+||++|.++..++++.+-..++++|+.. ...... ... +-+.+..+ |++. +...+
T Consensus 71 ~ei~ek-~-l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~ 148 (300)
T 3eld_A 71 RWLHER-G-YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPS 148 (300)
T ss_dssp HHHHHH-T-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHh-C-CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCc
Confidence 344444 3 45677899999999999999999877666788888832 111111 012 23444444 5554 22259
Q ss_pred cEEeehhhhccCC----h-HHHHHHHHHHHHhcccCCCC-cEEEEE
Q 041250 175 YAVLLKWILLDWN----D-EECVKILKKCKEAITRDGKK-RKVIIK 214 (259)
Q Consensus 175 D~~~~~~vlh~~~----d-~~~~~il~~~~~~L~p~~~g-g~lli~ 214 (259)
|++++.-..+ -. | .....+|+-+.+.|+| | |.+++-
T Consensus 149 DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~K 190 (300)
T 3eld_A 149 DTLLCDIGES-SSNPLVERDRTMKVLENFERWKHV---NTENFCVK 190 (300)
T ss_dssp SEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEEE
T ss_pred CEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEEE
Confidence 9998865554 21 2 1224568878899999 8 876664
No 292
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.47 E-value=0.00078 Score=54.04 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=62.9
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc------C--CCCeEEEeCCCCCC------------
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES------D--LVNLKYVGGDMFKA------------ 170 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--~~ri~~~~~d~~~~------------ 170 (259)
+.+..+||++||| .-+..+++ .++.+++.+|. ++..+.+++ . .++|+++.+|..+.
T Consensus 28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 4567899999986 33333343 56789999998 777777775 3 67999999995431
Q ss_pred ------------C---CCccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 171 ------------I---SPAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 171 ------------~---~~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
. ..||+|++-.-.. ...+..+.+.|+| ||.| |+|.+..
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k~-------~~~~~~~l~~l~~---GG~I-v~DNv~~ 157 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGRFR-------VGCALATAFSITR---PVTL-LFDDYSQ 157 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSSSH-------HHHHHHHHHHCSS---CEEE-EETTGGG
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCCCc-------hhHHHHHHHhcCC---CeEE-EEeCCcC
Confidence 1 2489998875211 2345556688999 6655 6665433
No 293
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=97.19 E-value=0.00096 Score=57.44 Aligned_cols=69 Identities=12% Similarity=0.121 Sum_probs=57.8
Q ss_pred hhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-CCCCeEEEeCCCCC
Q 041250 99 LATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-DLVNLKYVGGDMFK 169 (259)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~ 169 (259)
.....+++.+. ......+||..+|.|..+..++++. |+.+++++|. |.+++.+++ ..+|++++.++|.+
T Consensus 44 VLl~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 44 VLLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred ccHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 34567777777 6777899999999999999999985 8899999999 889988865 35789999888865
No 294
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.04 E-value=0.001 Score=54.26 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=66.3
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHH-Hh--hc-cc-CCCCeEEEeC-CCCC-CCCC
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHV-VN--GL-ES-DLVNLKYVGG-DMFK-AISP 173 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~-~~--~a-~~-~~~ri~~~~~-d~~~-~~~~ 173 (259)
...+.+.+. +....+|||+||++|.++...+....--++.++|+-.. -+ .. +. .-.-|+|+.+ |++. +.-.
T Consensus 67 L~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~ 144 (267)
T 3p8z_A 67 LQWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEK 144 (267)
T ss_dssp HHHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCC
T ss_pred HHHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcc
Confidence 345556654 66677999999999999998888765557999998221 11 11 11 4578999999 9876 3335
Q ss_pred ccEEeehhhhccCC-hHHH---HHHHHHHHHhccc
Q 041250 174 AYAVLLKWILLDWN-DEEC---VKILKKCKEAITR 204 (259)
Q Consensus 174 ~D~~~~~~vlh~~~-d~~~---~~il~~~~~~L~p 204 (259)
+|.+++--.=..-+ .-+. .++|.-+.+.|++
T Consensus 145 ~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~ 179 (267)
T 3p8z_A 145 CDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN 179 (267)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS
T ss_pred ccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc
Confidence 99888764332222 1122 3356656677876
No 295
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.00 E-value=0.0025 Score=52.70 Aligned_cols=107 Identities=18% Similarity=0.157 Sum_probs=62.6
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHH---HhhcccCCCCe---EEEeC-CCCCCCC-
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHV---VNGLESDLVNL---KYVGG-DMFKAIS- 172 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~---~~~a~~~~~ri---~~~~~-d~~~~~~- 172 (259)
..++.+.+ .++...+|||+||+.|.++...+++-+-..+.+.++.-. .+... ....+ .|+.+ ||++..+
T Consensus 62 L~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-~~~Gv~~i~~~~G~Df~~~~~~ 138 (269)
T 2px2_A 62 LRWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-QSYGWNIVTMKSGVDVFYKPSE 138 (269)
T ss_dssp HHHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-CSTTGGGEEEECSCCGGGSCCC
T ss_pred HHHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-cCCCceEEEeeccCCccCCCCC
Confidence 34555553 478889999999999999999888621112233333111 11111 11344 55657 9998434
Q ss_pred CccEEeehhhhccCC----hHH-HHHHHHHHHHhcccCCCCc-EEEEE
Q 041250 173 PAYAVLLKWILLDWN----DEE-CVKILKKCKEAITRDGKKR-KVIIK 214 (259)
Q Consensus 173 ~~D~~~~~~vlh~~~----d~~-~~~il~~~~~~L~p~~~gg-~lli~ 214 (259)
++|+|++-..-. -+ |.. ....|.=+.+.|+| || .+++-
T Consensus 139 ~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~FvvK 182 (269)
T 2px2_A 139 ISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSR---GPKEFCIK 182 (269)
T ss_dssp CCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEEE
T ss_pred CCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhc---CCcEEEEE
Confidence 599988654332 11 111 12346556688999 78 66663
No 296
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=96.94 E-value=0.022 Score=49.21 Aligned_cols=104 Identities=15% Similarity=0.222 Sum_probs=82.2
Q ss_pred CCCeEEEecCCchHHHHHHHHH-CCCCeEEEeechHHHhhccc----------------------------CCCCeEEEe
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKA-FPKLECTCFDLPHVVNGLES----------------------------DLVNLKYVG 164 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~~----------------------------~~~ri~~~~ 164 (259)
+...||-+|||.=.....+... .++++++-+|+|++++.=++ ..++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4678999999999999999875 36788999999998864221 157899999
Q ss_pred CCCCCC--C---------C-C-ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 165 GDMFKA--I---------S-P-AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 165 ~d~~~~--~---------~-~-~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
.|+.+. + . . .=+++.--++.+++.+++..+|+.+.+...+ |.+++.|++.+.+
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~d 235 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMGD 235 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTTS
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCCC
Confidence 999871 1 1 1 3366667899999999999999999998765 7888889986543
No 297
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=96.74 E-value=0.0062 Score=51.30 Aligned_cols=112 Identities=15% Similarity=0.193 Sum_probs=68.7
Q ss_pred hHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeechHH-Hh--h-ccc-CCCCeEEEeC-CCCC-CCCC
Q 041250 101 TSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDLPHV-VN--G-LES-DLVNLKYVGG-DMFK-AISP 173 (259)
Q Consensus 101 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~-~~--~-a~~-~~~ri~~~~~-d~~~-~~~~ 173 (259)
...+.+.+. +....+|||+||++|.++...+....--++.++|+-.. -+ . .++ .-.-|.|+.+ |++. +...
T Consensus 83 L~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~ 160 (321)
T 3lkz_A 83 LRWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC 160 (321)
T ss_dssp HHHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCC
Confidence 344555544 66667999999999999998777765557999998222 11 1 111 2234889998 9776 3235
Q ss_pred ccEEeehhhhccCCh---HH--HHHHHHHHHHhcccCCCC-cEEEEEeeeec
Q 041250 174 AYAVLLKWILLDWND---EE--CVKILKKCKEAITRDGKK-RKVIIKDMIKE 219 (259)
Q Consensus 174 ~D~~~~~~vlh~~~d---~~--~~~il~~~~~~L~p~~~g-g~lli~e~~~~ 219 (259)
+|++++--. ---+. |+ ..++|.-+.+.|++ + |-++| -.+.|
T Consensus 161 ~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~-KVl~p 207 (321)
T 3lkz_A 161 CDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCV-KVLCP 207 (321)
T ss_dssp CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEE-EESCT
T ss_pred CCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEE-EEcCC
Confidence 898776533 22221 11 23456666778887 5 55555 43333
No 298
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=96.58 E-value=0.003 Score=53.26 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=67.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHC-----CCCeEEEeec----hH-----------------------HHhhccc-----
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAF-----PKLECTCFDL----PH-----------------------VVNGLES----- 155 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~D~----~~-----------------------~~~~a~~----- 155 (259)
..+..||++|+..|.-++.+++.. |+.+++++|. |+ .++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346799999999999998887654 5788999994 11 1222333
Q ss_pred -C-CCCeEEEeCCCCCC---CC--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 156 -D-LVNLKYVGGDMFKA---IS--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 156 -~-~~ri~~~~~d~~~~---~~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
. .++|+++.||+.+. .+ .+|++++-.- + -+.....|..+.+.|+| || ++|+|.+
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~-y~~~~~~Le~~~p~L~p---GG-iIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---L-YESTWDTLTNLYPKVSV---GG-YVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---S-HHHHHHHHHHHGGGEEE---EE-EEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---c-cccHHHHHHHHHhhcCC---CE-EEEEcCC
Confidence 2 48999999999872 32 4888877642 2 13345789999999999 55 5555554
No 299
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=96.54 E-value=0.012 Score=51.43 Aligned_cols=107 Identities=16% Similarity=0.089 Sum_probs=74.8
Q ss_pred cCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc-----------CCCCeEEEeCCCCC--C-CC-Ccc
Q 041250 112 FEGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES-----------DLVNLKYVGGDMFK--A-IS-PAY 175 (259)
Q Consensus 112 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~ri~~~~~d~~~--~-~~-~~D 175 (259)
...+.+|||+.+|.|.=+..+++..++.+++..|+ +.-+...++ ...++.+...|... + .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 55678999999999999999999887778899998 444433322 23678999999876 2 23 599
Q ss_pred EEeehh--------h-------hccCChHH-------HHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 176 AVLLKW--------I-------LLDWNDEE-------CVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 176 ~~~~~~--------v-------lh~~~d~~-------~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
.|++-- + .+.|..++ ..+||.++.+.++| ||+|+-....+...
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsTCSl~~~ 290 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYSTCSLSHL 290 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEESCCCTT
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCCCchh
Confidence 988631 1 22233222 25789999999999 88876665554433
No 300
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=96.35 E-value=0.0072 Score=52.61 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=44.4
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc--CCCCeEEEeCCCCC
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES--DLVNLKYVGGDMFK 169 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~ 169 (259)
...|||||.|.|.++..|+++...-+++++++ +..++..++ ..++++++.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 57899999999999999999754457999988 555555544 35799999999976
No 301
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=96.25 E-value=0.026 Score=51.89 Aligned_cols=109 Identities=9% Similarity=-0.022 Sum_probs=71.2
Q ss_pred HHHHhcccccCCCCeEEEecCCchHHHHHHHHHC-------------CCCeEEEeec-hHHHhhccc-----CCCCeEEE
Q 041250 103 VMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAF-------------PKLECTCFDL-PHVVNGLES-----DLVNLKYV 163 (259)
Q Consensus 103 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~ 163 (259)
.+++.++ .....+|+|-+||+|.++....+.. ...++.++|+ +.+...|+. ..+.-.+.
T Consensus 208 lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~ 285 (530)
T 3ufb_A 208 FMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRID 285 (530)
T ss_dssp HHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEE
T ss_pred HHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccccc
Confidence 3444444 3445689999999999998876532 1346899998 777777764 33445677
Q ss_pred eCCCCC-CC------CCccEEeehhhhcc-CC-------------hHHHHHHHHHHHHhcc-------cCCCCcEEEEEe
Q 041250 164 GGDMFK-AI------SPAYAVLLKWILLD-WN-------------DEECVKILKKCKEAIT-------RDGKKRKVIIKD 215 (259)
Q Consensus 164 ~~d~~~-~~------~~~D~~~~~~vlh~-~~-------------d~~~~~il~~~~~~L~-------p~~~gg~lli~e 215 (259)
.+|.+. +. ..||+|+.+--+-. |. .+.....++.+.+.|+ | ||++.++-
T Consensus 286 ~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~---gGr~avVl 362 (530)
T 3ufb_A 286 PENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN---GGRAAVVV 362 (530)
T ss_dssp CSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS---CCEEEEEE
T ss_pred ccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC---CceEEEEe
Confidence 888775 32 14999998754421 11 1122346778888886 5 89887765
Q ss_pred e
Q 041250 216 M 216 (259)
Q Consensus 216 ~ 216 (259)
+
T Consensus 363 P 363 (530)
T 3ufb_A 363 P 363 (530)
T ss_dssp E
T ss_pred c
Confidence 4
No 302
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=95.97 E-value=0.011 Score=49.97 Aligned_cols=41 Identities=22% Similarity=0.122 Sum_probs=35.2
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES 155 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 155 (259)
.....|||++||+|..+.++++. +.+++++|+ +.+++.|++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 34579999999999999998886 468999999 888888775
No 303
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=95.61 E-value=0.046 Score=46.10 Aligned_cols=94 Identities=13% Similarity=0.072 Sum_probs=63.0
Q ss_pred cCCCCeEEEecC------CchHHHHHHHHHCCC-CeEEEeechHHHhhcccCCCCeEEEeCCCCC-CC-CCccEEeehhh
Q 041250 112 FEGLNSLVDVGG------GTGTAAKAIAKAFPK-LECTCFDLPHVVNGLESDLVNLKYVGGDMFK-AI-SPAYAVLLKWI 182 (259)
Q Consensus 112 ~~~~~~vlDvGg------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~~-~~~D~~~~~~v 182 (259)
.+...+|||+|+ -.|.+ .+.+..|. ..++.+|+.++...+. .++.||+.+ .. .++|+|+.-..
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~------~~IqGD~~~~~~~~k~DLVISDMA 178 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDAD------STLIGDCATVHTANKWDLIISDMY 178 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSS------EEEESCGGGEEESSCEEEEEECCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCC------eEEEccccccccCCCCCEEEecCC
Confidence 577899999995 77873 45556886 6899999855543222 558899876 22 35999886431
Q ss_pred ----hc---cC--ChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 183 ----LL---DW--NDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 183 ----lh---~~--~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
=| +- ...-+..++.=+.+.|+| ||.+++-=+
T Consensus 179 PNtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvVKVF 218 (344)
T 3r24_A 179 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKIT 218 (344)
T ss_dssp CTTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred CCcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEEEEe
Confidence 11 11 223456677777889999 888777644
No 304
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=95.26 E-value=0.0008 Score=43.96 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=41.6
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecC
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLT 63 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t 63 (259)
+..|++.|.+++.++|..|||+.+|++...+.+.+..|...+++. ....+.|.++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~-~~~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS-SPSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE-EEETTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe-cCCCceEeeC
Confidence 456888887644689999999999999999999888876655431 2344677654
No 305
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.11 E-value=0.31 Score=46.07 Aligned_cols=105 Identities=10% Similarity=0.021 Sum_probs=80.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC--------CCeEEEeechHHHhhccc-----------C------------------
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFP--------KLECTCFDLPHVVNGLES-----------D------------------ 156 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~-----------~------------------ 156 (259)
+...||-+|||.=....++...+| +++++-+|+|++++.=++ .
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 457899999999999999988766 678888888988864322 0
Q ss_pred CCCeEEEeCCCCCC-------------CCC-ccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCCC
Q 041250 157 LVNLKYVGGDMFKA-------------ISP-AYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENRK 222 (259)
Q Consensus 157 ~~ri~~~~~d~~~~-------------~~~-~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~~ 222 (259)
.++..++..|+.+. .+. .=+++.--+|.+++.+++.++|+.+.+ + | ++.+++.|.+.+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~e~~~~~~~ 261 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIILEQLIPKGP 261 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEEEECCTTCT
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEEEeecCCCC
Confidence 14899999999872 122 235566679999999999999999984 4 5 688899998877543
Q ss_pred C
Q 041250 223 K 223 (259)
Q Consensus 223 ~ 223 (259)
.
T Consensus 262 ~ 262 (695)
T 2zwa_A 262 F 262 (695)
T ss_dssp T
T ss_pred C
Confidence 3
No 306
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=95.10 E-value=0.0073 Score=65.00 Aligned_cols=97 Identities=13% Similarity=0.151 Sum_probs=49.2
Q ss_pred CCeEEEecCCchHHHHHHHHHCCC-----CeEEEeec-hHHHhhcccC--CCCeEEEeCCCCCC---CC-CccEEeehhh
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPK-----LECTCFDL-PHVVNGLESD--LVNLKYVGGDMFKA---IS-PAYAVLLKWI 182 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~~---~~-~~D~~~~~~v 182 (259)
..+||+||+|+|.....+.+.... .+++..|+ +...+.+++. .-.++...-|..++ .+ .||+|+.+++
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence 358999999999887776665432 25777887 5555566542 11233322233232 22 4999999999
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
||--++. ...|+++++.|+| ||++++.+.
T Consensus 1321 l~~t~~~--~~~l~~~~~lL~p---~G~l~~~e~ 1349 (2512)
T 2vz8_A 1321 LATLGDP--AVAVGNMAATLKE---GGFLLLHTL 1349 (2512)
T ss_dssp -------------------------CCEEEEEEC
T ss_pred ccccccH--HHHHHHHHHhcCC---CcEEEEEec
Confidence 9966543 4689999999999 999998874
No 307
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=94.43 E-value=0.0025 Score=44.50 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=44.8
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK 67 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~ 67 (259)
.++.|+..| . ++.|+.|||+.+|+++..+.+.|+.|...+++... . +.|.+++.++
T Consensus 32 ~r~~Il~~L-~--~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~-~-g~y~l~~~g~ 87 (96)
T 1y0u_A 32 VRRKILRML-D--KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV-G-ERWVVTDAGK 87 (96)
T ss_dssp HHHHHHHHH-H--TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-T-TEEEECTTTC
T ss_pred HHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE-C-CEEEECCCch
Confidence 466788888 5 78999999999999999999988887766654212 2 6899998765
No 308
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=93.97 E-value=0.15 Score=44.71 Aligned_cols=66 Identities=17% Similarity=0.302 Sum_probs=43.2
Q ss_pred cCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHH-------CCCCeEEEeechHHHhh
Q 041250 81 DESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKA-------FPKLECTCFDLPHVVNG 152 (259)
Q Consensus 81 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~D~~~~~~~ 152 (259)
+.|+..+.|...++.+- .. .+.... .+.+-.|+++|.|+|.++..+++. +..+++..++.++.+..
T Consensus 53 Tapeis~~FGe~la~~~---~~-~w~~~g--~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~ 125 (387)
T 1zkd_A 53 TSPEISQMFGELLGLWS---AS-VWKAAD--EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQ 125 (387)
T ss_dssp SHHHHCHHHHHHHHHHH---HH-HHHHTT--CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHH
T ss_pred CCCchHHHHHHHHHHHH---HH-HHHHcC--CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHH
Confidence 34777777877665431 11 122222 344567999999999999988764 23458999999555543
No 309
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=93.91 E-value=0.0048 Score=51.33 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=46.6
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK 67 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~ 67 (259)
+.|++.|...+++.|+.|||+++|++...+.|+|..|...+++..+.+.++|.+++..-
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~~~ 67 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYRLGPQVL 67 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEEECTTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHHHH
Confidence 45778887644789999999999999999999999988877653233448999987643
No 310
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=93.90 E-value=0.0063 Score=43.84 Aligned_cols=63 Identities=17% Similarity=0.085 Sum_probs=48.2
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHc--CCCccccccceeccccccCCCCCCCCceeecCHhhhhhhc
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSAL--TINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLLK 71 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~--~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~~ 71 (259)
.+..|++.|..+ |+.|+.+||+.+ ++++..+++-++.|...+++... ..+.|.+|+.++.+..
T Consensus 14 ~d~~IL~~L~~~-g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~-~rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 14 WDDRILEIIHEE-GNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL-ANGVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHHHH-SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC-STTCEEECHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec-CCceEEECchHHHHHH
Confidence 456688889764 799999999999 99999999888777666554212 3348999999984443
No 311
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=93.88 E-value=0.27 Score=41.14 Aligned_cols=100 Identities=14% Similarity=-0.050 Sum_probs=73.4
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc---CCCCeEEEeCCCCC--C--CC---CccEEeehhhh
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES---DLVNLKYVGGDMFK--A--IS---PAYAVLLKWIL 183 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~--~--~~---~~D~~~~~~vl 183 (259)
...+||+=+|+|.+++++++. .-+++.+|+ +..++..++ ..++++++..|.++ . .| ++|+|++---.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 456899999999999999984 568999999 777777666 45789999999765 1 12 49999988766
Q ss_pred ccCChHHHHHHHHHHHHh--cccCCCCcEEEEEeeeecCC
Q 041250 184 LDWNDEECVKILKKCKEA--ITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~~--L~p~~~gg~lli~e~~~~~~ 221 (259)
..-. +..++++.+.+. +.| +|.++|.=++.+..
T Consensus 170 e~k~--~~~~vl~~L~~~~~r~~---~Gi~v~WYPi~~~~ 204 (283)
T 2oo3_A 170 ERKE--EYKEIPYAIKNAYSKFS---TGLYCVWYPVVNKA 204 (283)
T ss_dssp CSTT--HHHHHHHHHHHHHHHCT---TSEEEEEEEESSHH
T ss_pred CCCc--HHHHHHHHHHHhCccCC---CeEEEEEEeccchH
Confidence 4322 344556655553 335 79888888876644
No 312
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=93.53 E-value=0.38 Score=36.50 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=59.7
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeec-----hHHHhhcccCCCCeEEEeCCCCCCCC------CccEEeehhhh
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-----PHVVNGLESDLVNLKYVGGDMFKAIS------PAYAVLLKWIL 183 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~ri~~~~~d~~~~~~------~~D~~~~~~vl 183 (259)
..-|+|+|=|+|..=..+.+.+|+-.+.++|. |+.. .+.-.++.||+.+..| +..+.+...=+
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~------P~~e~~ilGdi~~tL~~~~~r~g~~a~LaHaD~ 114 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDST------PPEAQLILGDIRETLPATLERFGATASLVHADL 114 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGC------CCGGGEEESCHHHHHHHHHHHHCSCEEEEEECC
T ss_pred CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCC------CchHheecccHHHHHHHHHHhcCCceEEEEeec
Confidence 45799999999999999999999999999996 3332 3344677788877322 23444444333
Q ss_pred ccCChHHHHHHHHHH----HHhcccCCCCcEEEEEeeee
Q 041250 184 LDWNDEECVKILKKC----KEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 184 h~~~d~~~~~il~~~----~~~L~p~~~gg~lli~e~~~ 218 (259)
-.-..++.....+.+ ...|.| || +++...-+
T Consensus 115 G~g~~~~d~a~a~~lsplI~~~la~---GG-i~vS~~pl 149 (174)
T 3iht_A 115 GGHNREKNDRFARLISPLIEPHLAQ---GG-LMVSSDRM 149 (174)
T ss_dssp CCSCHHHHHHHHHHHHHHHGGGEEE---EE-EEEESSCC
T ss_pred CCCCcchhHHHHHhhhHHHHHHhcC---Cc-EEEeCCcc
Confidence 333334333444443 457888 55 45544433
No 313
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=93.37 E-value=0.48 Score=41.39 Aligned_cols=99 Identities=12% Similarity=0.138 Sum_probs=69.1
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCe-EEEeec-hHHHhhcccCCCCeEEEeCCCCCC----C-------CCccEEeehhh
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLESDLVNLKYVGGDMFKA----I-------SPAYAVLLKWI 182 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~----~-------~~~D~~~~~~v 182 (259)
-+++|+-||.|.++..+.++ +.+ +..+|+ +.+++..+...+...++.+|+.+- + +.+|+++...-
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 47999999999999999998 465 558898 777766665555678888888762 2 35899998877
Q ss_pred hccCC-------hHHHHHHHHHHH---HhcccCCCCcEEEEEeeeecCC
Q 041250 183 LLDWN-------DEECVKILKKCK---EAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 183 lh~~~-------d~~~~~il~~~~---~~L~p~~~gg~lli~e~~~~~~ 221 (259)
+..++ ++..-.++.... +.++| ++++.|.|..--
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P-----~~~v~ENV~gl~ 124 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP-----LFFLAENVPGIM 124 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC-----SEEEEEECTTTT
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC-----CEEEEecchHhh
Confidence 66664 222234444444 34555 678899876543
No 314
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=93.29 E-value=0.012 Score=49.36 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=44.7
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK 67 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~ 67 (259)
+.|++.|...+++.|+.|||+++|++...+.|+|..|...+++. ...+++|.+++..-
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~-~~~~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLA-RSADGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEE-ECTTSEEEECTHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE-ECCCCcEEehHHHH
Confidence 45788888755689999999999999999999999988877653 22347899987643
No 315
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=93.28 E-value=0.01 Score=40.14 Aligned_cols=63 Identities=6% Similarity=-0.006 Sum_probs=42.3
Q ss_pred HHHHcCcchhhhcCCC---CCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhhhh
Q 041250 5 CAFQLGIPDIINKHGK---PMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNASKL 68 (259)
Q Consensus 5 ~a~~l~lf~~L~~~~~---~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~~~ 68 (259)
.-.+..|++.|.++ + ++|+.|||+++|++...+.+.|..|..-+++.. ...++.|.+.+....
T Consensus 9 ~~~~~~IL~~L~~~-~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~~~ 75 (81)
T 1qbj_A 9 QDQEQRILKFLEEL-GEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVSTQA 75 (81)
T ss_dssp HHHHHHHHHHHHHH-CTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC-----
T ss_pred hHHHHHHHHHHHHc-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcHHh
Confidence 34566788888875 4 799999999999999999887776654443211 234578888877653
No 316
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=93.13 E-value=0.01 Score=48.79 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=46.8
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL 69 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l 69 (259)
+.|++.|...+++.|+.|||+.+|++...+.|+|..|...+++..+.+.++|.+++..-.|
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEEEECSHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeEEECHHHHHH
Confidence 4567788764457999999999999999999999998877765223334789998765444
No 317
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=92.73 E-value=0.015 Score=40.85 Aligned_cols=59 Identities=15% Similarity=0.086 Sum_probs=44.3
Q ss_pred HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--CCCCceeecCHh
Q 041250 5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--NDEEQGYVLTNA 65 (259)
Q Consensus 5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~~~~~y~~t~~ 65 (259)
.-.++.|+..|.. ++.|+.|||+.+|+++..+++-|+.|...+++.. +.....|++|+.
T Consensus 22 ~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~ 82 (102)
T 3pqk_A 22 HPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEA 82 (102)
T ss_dssp SHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSS
T ss_pred CHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcH
Confidence 3467778889976 7999999999999999999998887766555421 223346888764
No 318
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=92.61 E-value=0.016 Score=47.96 Aligned_cols=59 Identities=10% Similarity=0.064 Sum_probs=46.7
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL 69 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l 69 (259)
+.|++.|...+++.|+.|||+++|+++..+.|+|..|...+++ +.+++.|.+++..-.|
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v--~~~~~~Y~Lg~~~~~l 75 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYV--AGSGGRWSLTPRVLSI 75 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEETTEEEECGGGHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE--EeCCCEEEEcHHHHHH
Confidence 4577788754468999999999999999999999988777665 3345899998876444
No 319
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=92.56 E-value=0.13 Score=42.55 Aligned_cols=41 Identities=22% Similarity=0.153 Sum_probs=34.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES 155 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 155 (259)
.....|||..||+|..+.+..+. +.+++++|+ |..++.+++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~ 252 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANF 252 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 44679999999999999998887 568999999 777776654
No 320
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=92.38 E-value=0.012 Score=42.87 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=44.7
Q ss_pred HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC--CCceeecCHhh
Q 041250 5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND--EEQGYVLTNAS 66 (259)
Q Consensus 5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~--~~~~y~~t~~~ 66 (259)
.-.++.|+..|... ++.|+.|||+.+|+++..+++.|+.|...+++..+. ....|++++..
T Consensus 41 ~~~rl~IL~~L~~~-~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~ 103 (122)
T 1u2w_A 41 DENRAKITYALCQD-EELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEH 103 (122)
T ss_dssp SHHHHHHHHHHHHS-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHH
T ss_pred CHHHHHHHHHHHHC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHH
Confidence 34577899999843 799999999999999999999888876665542122 22358887653
No 321
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=92.26 E-value=0.022 Score=46.91 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=44.9
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS 66 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~ 66 (259)
+.|++.|...+++.|+.|||+.+|++...+.|+|..|...+++..+ ..+.|.+++..
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~-~~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK-KDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC-TTSCEEECTHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC-CCCcEEECHHH
Confidence 4567788764358999999999999999999999988777665223 46789998754
No 322
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=92.15 E-value=0.017 Score=48.08 Aligned_cols=56 Identities=13% Similarity=0.180 Sum_probs=44.9
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS 66 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~ 66 (259)
+.|++.|...+++.|+.|||+++|++...+.|+|..|...+++ +.++++|.+++..
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v--~~~~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYV--ATDGSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSE--EESSSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE--EecCCEEEEcHHH
Confidence 4577778653468999999999999999999999988777665 3346899998764
No 323
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=92.14 E-value=0.018 Score=38.73 Aligned_cols=59 Identities=8% Similarity=0.062 Sum_probs=43.7
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCcc-ccccceeccccccCCCC--CCCCceeecCHhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLS-KTQCFFAQQKLVSSGNN--NDEEQGYVLTNASK 67 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~-~l~~ll~~~~~~~~~~~--~~~~~~y~~t~~~~ 67 (259)
.+-.|.+.|... ||.|+.+||+.+|+++. .+.+-|..|..-+++.. ...+ .|.+|+.++
T Consensus 12 ~~~~IL~~Lk~~-g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP-~w~LT~~g~ 73 (79)
T 1xmk_A 12 IKEKICDYLFNV-SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPP-IWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHHT-CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSC-EEEECHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCC-CeEeCHhHH
Confidence 345677888876 89999999999999998 89887776654443311 1233 899999886
No 324
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=92.00 E-value=0.48 Score=40.77 Aligned_cols=102 Identities=9% Similarity=0.082 Sum_probs=65.2
Q ss_pred CeEEEecCCchHHHHHHHHHCCCC-eEEEeec-hHHHhhcccCCCCeEEEeCCCCCC----CC--CccEEeehhhhccCC
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA----IS--PAYAVLLKWILLDWN 187 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~----~~--~~D~~~~~~vlh~~~ 187 (259)
.+++|+-||.|.++..+.++.-+. .+..+|+ +.+++..+...+...++.+|+.+- ++ .+|+++...-...++
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS 82 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence 579999999999999999984223 3788898 777777776455566788898772 23 589999887655554
Q ss_pred hH--------HHHHHHHHHHHhcccCCCC--cEEEEEeeeec
Q 041250 188 DE--------ECVKILKKCKEAITRDGKK--RKVIIKDMIKE 219 (259)
Q Consensus 188 d~--------~~~~il~~~~~~L~p~~~g--g~lli~e~~~~ 219 (259)
-. ..-.++.++.+.++.. . -++++.|.+..
T Consensus 83 ~ag~~~g~~d~r~~l~~~~~~~i~~~--~~~P~~~~~ENV~~ 122 (343)
T 1g55_A 83 RIGRQGDMTDSRTNSFLHILDILPRL--QKLPKYILLENVKG 122 (343)
T ss_dssp -------------CHHHHHHHHGGGC--SSCCSEEEEEEETT
T ss_pred hcCCcCCccCccchHHHHHHHHHHHh--cCCCCEEEEeCCcc
Confidence 21 1123555555544431 1 35788888764
No 325
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=91.81 E-value=0.014 Score=40.63 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=45.0
Q ss_pred HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCceeecCHhh
Q 041250 5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQGYVLTNAS 66 (259)
Q Consensus 5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~y~~t~~~ 66 (259)
.-.++.|+..|.+ ++.|+.|||+.+|+++..+++-|+.|...+++..+ .....|.+++..
T Consensus 22 ~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~ 83 (98)
T 3jth_A 22 NERRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEE 83 (98)
T ss_dssp SHHHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHH
T ss_pred CHHHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHH
Confidence 3457788899986 89999999999999999999988887666554211 233458877643
No 326
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.47 E-value=0.016 Score=38.73 Aligned_cols=57 Identities=7% Similarity=-0.008 Sum_probs=40.9
Q ss_pred HHcCcchhhhcCCC---CCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCH
Q 041250 7 FQLGIPDIINKHGK---PMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTN 64 (259)
Q Consensus 7 ~~l~lf~~L~~~~~---~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~ 64 (259)
.+..|++.|.++ + ++|+.|||+++|++...+.+.|..|..-+++.. ...++.|.+++
T Consensus 15 ~~~~IL~~L~~~-~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEEL-GEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHH-CSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEEECC
T ss_pred HHHHHHHHHHHc-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceEecC
Confidence 456677888875 4 799999999999999999988877654443211 23456777654
No 327
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=91.34 E-value=0.034 Score=46.14 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=43.9
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASK 67 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~ 67 (259)
+.|++.|...+++.|+.|||+++|++...+.|+|..|...+++..+.+ ++|.+++..-
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~-~~Y~lg~~~~ 83 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRAD-GSYSLGPEML 83 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTT-SCEEECHHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCC-CeEEecHHHH
Confidence 456777764337899999999999999999999998877766522222 3899987643
No 328
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=91.31 E-value=0.035 Score=38.64 Aligned_cols=55 Identities=13% Similarity=0.133 Sum_probs=44.0
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250 10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL 69 (259)
Q Consensus 10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l 69 (259)
.|...|.. + ++..+||..+|++++.++..++.+...+++ +...+.|.+|+.+..+
T Consensus 12 ~IL~~i~~--~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI--~~~~~~~~LT~kG~~~ 66 (95)
T 1r7j_A 12 AILEACKS--G-SPKTRIMYGANLSYALTGRYIKMLMDLEII--RQEGKQYMLTKKGEEL 66 (95)
T ss_dssp HHHHHHTT--C-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEETTEEEECHHHHHH
T ss_pred HHHHHHHc--C-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCe--EEECCeeEEChhHHHH
Confidence 35566664 5 999999999999999999999888776654 4456679999999844
No 329
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=91.28 E-value=0.024 Score=46.64 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=49.1
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~ 70 (259)
.++.|+..|..+ ++.|..|||+.+|+++..+.|.++.|...+++........|.+|+.+..+.
T Consensus 153 ~~~~IL~~L~~~-~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 153 EEMKLLNVLYET-KGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGKDRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHHH-TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHH
Confidence 355677777654 789999999999999999999998887766542223456899999998553
No 330
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=90.47 E-value=0.022 Score=39.35 Aligned_cols=60 Identities=15% Similarity=0.111 Sum_probs=44.3
Q ss_pred HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--CCCCceeecCHhh
Q 041250 6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--NDEEQGYVLTNAS 66 (259)
Q Consensus 6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~~~~~y~~t~~~ 66 (259)
-.++.|+..|.. +++.|..|||+.+|+++..+.+.+..+...+++.. +.....|.+++.+
T Consensus 24 ~~~~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~ 85 (99)
T 3cuo_A 24 PKRLLILCMLSG-SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEA 85 (99)
T ss_dssp HHHHHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHH
T ss_pred hHHHHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHH
Confidence 356678888876 36899999999999999999998888766655421 1223357787654
No 331
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=90.46 E-value=2.9 Score=30.47 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=53.5
Q ss_pred CCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC-------CCCccEEeehhhhcc
Q 041250 115 LNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-------ISPAYAVLLKWILLD 185 (259)
Q Consensus 115 ~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~~~~~~vlh~ 185 (259)
..+|+=+|+|. |......+.+. +.+++++|. ++.++.+++ ..+.++.+|..++ ..++|++++.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~~--~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~----- 78 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSRTRVDELRE--RGVRAVLGNAANEEIMQLAHLECAKWLILT----- 78 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHH--TTCEEEESCTTSHHHHHHTTGGGCSEEEEC-----
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHH--cCCCEEECCCCCHHHHHhcCcccCCEEEEE-----
Confidence 35788888865 44333333333 568999998 777776663 4677888998763 1247887765
Q ss_pred CC-hHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 186 WN-DEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 186 ~~-d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
.+ ++....+.. ..+.+.| +.+++.
T Consensus 79 ~~~~~~n~~~~~-~a~~~~~---~~~iia 103 (140)
T 3fwz_A 79 IPNGYEAGEIVA-SARAKNP---DIEIIA 103 (140)
T ss_dssp CSCHHHHHHHHH-HHHHHCS---SSEEEE
T ss_pred CCChHHHHHHHH-HHHHHCC---CCeEEE
Confidence 33 333434444 4555666 566544
No 332
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=90.35 E-value=0.015 Score=41.25 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=42.8
Q ss_pred HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC--CCceeecCHh
Q 041250 6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND--EEQGYVLTNA 65 (259)
Q Consensus 6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~--~~~~y~~t~~ 65 (259)
-.++.|+..|.. ++.|+.|||+.+|+++..+++.|+.+...+++..+. ....|++++.
T Consensus 26 ~~r~~IL~~L~~--~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~ 85 (106)
T 1r1u_A 26 YNRIRIMELLSV--SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDI 85 (106)
T ss_dssp HHHHHHHHHHHH--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence 356788888885 789999999999999999999888776665542111 2225777654
No 333
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=90.18 E-value=0.014 Score=42.24 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=46.2
Q ss_pred HHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCceeecCHhh
Q 041250 3 LKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQGYVLTNAS 66 (259)
Q Consensus 3 L~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~y~~t~~~ 66 (259)
|..-.++.|+..|.. ++.|+.|||+.+|+++..+++-|+.|...+++..+ ...-.|++++..
T Consensus 15 l~~~~R~~Il~~L~~--~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~ 78 (118)
T 3f6o_A 15 LADPTRRAVLGRLSR--GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEP 78 (118)
T ss_dssp HTSHHHHHHHHHHHT--CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHH
T ss_pred hCCHHHHHHHHHHHh--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHH
Confidence 334567889999985 89999999999999999999988887666654211 223357777644
No 334
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=89.73 E-value=0.32 Score=41.24 Aligned_cols=92 Identities=25% Similarity=0.237 Sum_probs=56.2
Q ss_pred CCCeEEEecCCchHHHHHH----HHHCCCCe--EEEeec-h--------HHHhh-c-------cc-CCCCe--EEEeCCC
Q 041250 114 GLNSLVDVGGGTGTAAKAI----AKAFPKLE--CTCFDL-P--------HVVNG-L-------ES-DLVNL--KYVGGDM 167 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l----~~~~p~~~--~~~~D~-~--------~~~~~-a-------~~-~~~ri--~~~~~d~ 167 (259)
..-+|+|+|=|+|...... .+..|+.+ ++.++. | +.... . .. ...+| .+.-||.
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 3468999999999876543 34578765 566653 1 10000 0 00 23444 4577888
Q ss_pred CCC---CC--CccEEeehhh-----hccCChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250 168 FKA---IS--PAYAVLLKWI-----LLDWNDEECVKILKKCKEAITRDGKKRKVI 212 (259)
Q Consensus 168 ~~~---~~--~~D~~~~~~v-----lh~~~d~~~~~il~~~~~~L~p~~~gg~ll 212 (259)
.+. ++ .+|++++--. -..|+ ..+++++++.++| ||.+.
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs----~e~f~~l~~~~~p---gg~la 223 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWT----LDFLSLIKERIDE---KGYWV 223 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGS----HHHHHHHHTTEEE---EEEEE
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCC----HHHHHHHHHHhCC---CcEEE
Confidence 762 33 4898887531 11244 3689999999999 77654
No 335
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=89.66 E-value=0.05 Score=41.10 Aligned_cols=47 Identities=13% Similarity=-0.027 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS 66 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~ 66 (259)
++.|.++||+.+++++..+.+++..|.-.+++......|.|.++...
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG~GGy~L~~~p 75 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDL 75 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CCEEESSCG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccCCCceEeCCCh
Confidence 68999999999999999999999988776655322226788887644
No 336
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=89.56 E-value=0.12 Score=39.61 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS 66 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~ 66 (259)
+++|.++||+.+++++..+.+++..|.-.+++.. ...+|.|.+....
T Consensus 27 ~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (162)
T 3k69_A 27 SKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLAL 74 (162)
T ss_dssp SCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECCSCG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeEecCCh
Confidence 6899999999999999999999998877666532 3456779887654
No 337
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=89.49 E-value=0.028 Score=38.89 Aligned_cols=64 Identities=9% Similarity=0.084 Sum_probs=47.0
Q ss_pred HHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC-----CCCCceeecCHhhh
Q 041250 3 LKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-----NDEEQGYVLTNASK 67 (259)
Q Consensus 3 L~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-----~~~~~~y~~t~~~~ 67 (259)
+..-.++.|+..|... ++.|..|||+.+|+++..+.+.++.+...+++.. +.....|.+|+.+.
T Consensus 13 l~~~~~~~iL~~L~~~-~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 13 LGNPVRLGIMIFLLPR-RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp HHSHHHHHHHHHHHHH-SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred cCChHHHHHHHHHHhc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence 4455678888888643 7899999999999999999998887765554321 11223688888874
No 338
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=89.47 E-value=0.37 Score=42.85 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=39.5
Q ss_pred cCchHHHHHHHHHHhcchhhhHHHHHhcccccCCCCeEEEecCCchHHHHHHHHHCC-----CCeEEEeechHH
Q 041250 81 DESKLNNFFNEAMASDARLATSVMIQKCKNVFEGLNSLVDVGGGTGTAAKAIAKAFP-----KLECTCFDLPHV 149 (259)
Q Consensus 81 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-----~~~~~~~D~~~~ 149 (259)
+.|+....|...++.+ +.+.+. ..+..+|+++|+|+|.++..+++... ..++..++.++.
T Consensus 113 TAPeiS~~FGe~la~~-------~~~~~~--~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~ 177 (432)
T 4f3n_A 113 TAPELSPLFAQTLARP-------VAQALD--ASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGE 177 (432)
T ss_dssp SCGGGHHHHHHHHHHH-------HHHHHH--HHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSS
T ss_pred CchhhhHHHHHHHHHH-------HHHHHH--hcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHH
Confidence 5677777777765443 222222 12256899999999999999876431 237899998433
No 339
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=89.47 E-value=0.032 Score=39.92 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=45.4
Q ss_pred HcCcchhhhcCCCCCC--HHHHHHHc-CCCccccccceeccccccCCCCC-CCCceeecCHhhhhh
Q 041250 8 QLGIPDIINKHGKPMT--LNELVSAL-TINLSKTQCFFAQQKLVSSGNNN-DEEQGYVLTNASKLL 69 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t--~~elA~~~-~~~~~~l~~ll~~~~~~~~~~~~-~~~~~y~~t~~~~~l 69 (259)
++.|+..|.. |+.+ +.||++.+ |+++..+++-|+.|...+++... .....|++|+.++.+
T Consensus 29 rl~IL~~L~~--g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l 92 (111)
T 3df8_A 29 TMLIISVLGN--GSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNV 92 (111)
T ss_dssp HHHHHHHHTS--SSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHH
T ss_pred HHHHHHHHhc--CCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHH
Confidence 4556677774 7888 99999999 99999999988887766654211 134579999988744
No 340
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=89.43 E-value=0.027 Score=40.72 Aligned_cols=59 Identities=10% Similarity=0.030 Sum_probs=44.6
Q ss_pred HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCceeecCHhh
Q 041250 6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQGYVLTNAS 66 (259)
Q Consensus 6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~y~~t~~~ 66 (259)
-.++.|+..|.. ++.++.|||+.+|+++..+++.|+.|...+++..+ ...-.|++++..
T Consensus 21 ~~r~~IL~~L~~--~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~ 81 (118)
T 2jsc_A 21 PTRCRILVALLD--GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSH 81 (118)
T ss_dssp HHHHHHHHHHHT--TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHH
Confidence 457788888885 78999999999999999999988887766654211 223358888653
No 341
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=88.91 E-value=0.52 Score=41.61 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=34.7
Q ss_pred CCCCeEEEecCCchHHHHHHH-HHCCC-CeEEEeec-hHHHhhccc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIA-KAFPK-LECTCFDL-PHVVNGLES 155 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a~~ 155 (259)
++..+++|||++.|.++..++ +..+. .+++.++- |...+..++
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~ 270 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQN 270 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence 567899999999999999988 66765 78999997 766655443
No 342
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=88.85 E-value=0.061 Score=35.98 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=34.0
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
..|++.|... ++.|..|||+.+|+++..+++.|..|...+++
T Consensus 3 ~~Il~~L~~~-~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI 44 (81)
T 2htj_A 3 NEILEFLNRH-NGGKTAEIAEALAVTDYQARYYLLLLEKAGMV 44 (81)
T ss_dssp HHHHHHHHHS-CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 3467777764 78999999999999999999988887665544
No 343
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=88.76 E-value=0.029 Score=39.97 Aligned_cols=60 Identities=10% Similarity=0.053 Sum_probs=43.8
Q ss_pred HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCceeecCHhhh
Q 041250 6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQGYVLTNASK 67 (259)
Q Consensus 6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~y~~t~~~~ 67 (259)
-.++.|+..|.. ++.|+.|||+.+|+++..+.+.+..+...+++... .....|.+|+.+.
T Consensus 21 ~~r~~IL~~L~~--~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 21 ETRWEILTELGR--ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHHH--SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred hHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHH
Confidence 356778888854 78999999999999999999988887766554211 1123477776653
No 344
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=88.74 E-value=0.072 Score=38.99 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCCC-CCCceeecCHhh
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-DEEQGYVLTNAS 66 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-~~~~~y~~t~~~ 66 (259)
++.|..|||+.+|+++..+.+++..|...+++... ...|.|.++...
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~ 72 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEP 72 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCG
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCH
Confidence 68999999999999999999999988777655322 234778887543
No 345
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=88.47 E-value=0.082 Score=40.47 Aligned_cols=47 Identities=13% Similarity=0.242 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS 66 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~ 66 (259)
++.|.++||+.+++++..+.+++..|.-.+++.. ...+|.|.++...
T Consensus 43 ~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 90 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDP 90 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCH
Confidence 6899999999999999999999998877665432 3456779887543
No 346
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=88.45 E-value=0.015 Score=41.39 Aligned_cols=58 Identities=16% Similarity=0.183 Sum_probs=42.4
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC--CCceeecCHhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND--EEQGYVLTNAS 66 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~--~~~~y~~t~~~ 66 (259)
.++.|+..|.. ++.|+.|||+.+|+++..+++.|+.|...+++..+. ....|.+++..
T Consensus 26 ~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~ 85 (108)
T 2kko_A 26 RRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGED 85 (108)
T ss_dssp TTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHH
T ss_pred HHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHH
Confidence 45667888875 799999999999999999999888877666542111 22357776543
No 347
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=88.37 E-value=0.88 Score=37.55 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=63.7
Q ss_pred CCeEEEecCCchHHHHHHHHH-------CCCCeEEEeec----hHH------------------------Hhhc------
Q 041250 115 LNSLVDVGGGTGTAAKAIAKA-------FPKLECTCFDL----PHV------------------------VNGL------ 153 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~~a------ 153 (259)
+..|+++|+-.|.-+..++.. .++-++.++|- |+. +...
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 569999999999988887652 46778999993 321 1100
Q ss_pred -cc---CCCCeEEEeCCCCCCC-------C--CccEEeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 154 -ES---DLVNLKYVGGDMFKAI-------S--PAYAVLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 154 -~~---~~~ri~~~~~d~~~~~-------~--~~D~~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
+. ..++|+++.|++.+.. | .+|++++-. ++ -+.....+..+...|.| ||.|++-|
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~---D~-Y~~t~~~le~~~p~l~~---GGvIv~DD 217 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL---DL-YEPTKAVLEAIRPYLTK---GSIVAFDE 217 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC---CC-HHHHHHHHHHHGGGEEE---EEEEEESS
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC---cc-cchHHHHHHHHHHHhCC---CcEEEEcC
Confidence 01 2489999999998722 2 378777664 22 13345789999999999 55554444
No 348
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=88.24 E-value=0.11 Score=36.42 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=33.6
Q ss_pred HHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceecc
Q 041250 5 CAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQ 45 (259)
Q Consensus 5 ~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~ 45 (259)
.+.++||+..|.. |+.|..|||+.+|++...++|+=+++
T Consensus 44 l~~R~~l~~~L~~--ge~TQREIA~~lGiS~stISRi~r~L 82 (101)
T 1jhg_A 44 LGTRVRIIEELLR--GEMSQRELKNELGAGIATITRGSNSL 82 (101)
T ss_dssp HHHHHHHHHHHHH--CCSCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCcCHHHHHHHHCCChhhhhHHHHHH
Confidence 4678999999987 78999999999999999999974444
No 349
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=88.14 E-value=0.07 Score=37.74 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=43.2
Q ss_pred cCcchhhhcCCCCCCHHHHHHHc-CCCccccccceeccccccCCCCC-----CCCceeecCHhhhhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSAL-TINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLL 69 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~-~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l 69 (259)
+.|+..|.. ++.+..|||+.+ |+++..+.+.|+.|...+++... ...-.|.+|+.++.+
T Consensus 17 ~~IL~~L~~--~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l 81 (107)
T 2hzt_A 17 XVILXHLTH--GKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSL 81 (107)
T ss_dssp HHHHHHHTT--CCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGG
T ss_pred HHHHHHHHh--CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHH
Confidence 345666764 799999999999 99999999988887766654211 122358999887644
No 350
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=87.91 E-value=0.034 Score=42.26 Aligned_cols=63 Identities=10% Similarity=0.009 Sum_probs=47.2
Q ss_pred HHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCceeecCHhhh
Q 041250 3 LKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQGYVLTNASK 67 (259)
Q Consensus 3 L~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~y~~t~~~~ 67 (259)
|..-.++.|+..|.. ++.|+.|||+.+|+++..+++-|+.|...+++..+ ...-.|++|+.+.
T Consensus 55 L~~p~R~~IL~~L~~--~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~ 119 (151)
T 3f6v_A 55 AAEPTRRRLVQLLTS--GEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGL 119 (151)
T ss_dssp HTSHHHHHHHHHGGG--CCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH
T ss_pred hCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHH
Confidence 334568889999985 89999999999999999999988887766654211 1223588887653
No 351
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=87.62 E-value=0.084 Score=36.09 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=32.7
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250 11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS 50 (259)
Q Consensus 11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~ 50 (259)
|.+.|.+. |.+|+.|||+.+++++..++|-|+.+...+.
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~ 45 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQTPQPLIDAMLERMEAMGK 45 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 56778775 8999999999999999999998887765543
No 352
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=87.31 E-value=0.047 Score=39.77 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=42.7
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC--CCceeecCHh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND--EEQGYVLTNA 65 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~--~~~~y~~t~~ 65 (259)
.++.|+..|.+ ++.++.|||+.+|+++..+++.|+.|...+++..+. ..-.|++++.
T Consensus 47 ~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~ 105 (122)
T 1r1t_A 47 NRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDH 105 (122)
T ss_dssp HHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence 56788999985 799999999999999999999888776665442121 2235777654
No 353
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=87.29 E-value=0.089 Score=35.18 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=32.1
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCccccccceecccccc
Q 041250 11 IPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVS 49 (259)
Q Consensus 11 lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~ 49 (259)
|.+.|.+. +.+|++|||+.+++++..++|-|+.+...+
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G 44 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNTPQPMINAMLQQLESMG 44 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 56778775 899999999999999999999887766544
No 354
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=86.88 E-value=0.097 Score=39.25 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS 66 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~ 66 (259)
++.|.++||+.+++++..+.+++..|.-.+++.. ...+|.|.+....
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPA 74 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCc
Confidence 5899999999999999999999998877665432 3445789887644
No 355
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=86.26 E-value=2.8 Score=35.50 Aligned_cols=93 Identities=18% Similarity=0.134 Sum_probs=60.5
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeC--CCCCC----CCCccEEeehhhh
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGG--DMFKA----ISPAYAVLLKWIL 183 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--d~~~~----~~~~D~~~~~~vl 183 (259)
.....+||-+|+|. |.++..+++.. +.++++.|. ++-.+.+++......+-.. |+.+. .+++|+++....
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g- 241 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAV- 241 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCC-
Confidence 56667888899765 99999999987 459999997 7777777763322222111 11110 124777765421
Q ss_pred ccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 184 LDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 184 h~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
. ...++.+.+.|+| +|+++++-.
T Consensus 242 ---~----~~~~~~~~~~l~~---~G~iv~~G~ 264 (340)
T 3s2e_A 242 ---S----PKAFSQAIGMVRR---GGTIALNGL 264 (340)
T ss_dssp ---C----HHHHHHHHHHEEE---EEEEEECSC
T ss_pred ---C----HHHHHHHHHHhcc---CCEEEEeCC
Confidence 1 2467888899999 899887654
No 356
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=86.23 E-value=0.13 Score=37.94 Aligned_cols=59 Identities=12% Similarity=0.000 Sum_probs=43.7
Q ss_pred CcchhhhcCCCCCCHHHHHHHc-CCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250 10 GIPDIINKHGKPMTLNELVSAL-TINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL 70 (259)
Q Consensus 10 ~lf~~L~~~~~~~t~~elA~~~-~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~ 70 (259)
-|+..|.. |+.+..||++.+ |+++..+.+.|+.|...+++... ...-.|++|+.++.|.
T Consensus 30 ~IL~~L~~--g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 30 ILFYHMID--GKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp HHHHHHTT--SCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHhc--CCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHH
Confidence 34555654 899999999999 99999999999888766654211 1224699999988653
No 357
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=86.00 E-value=0.11 Score=38.41 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL 69 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l 69 (259)
++.|+.+||+.+|+++..+.+.++.|...+++. ....+.|.+|+.+..+
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~-r~~~~~~~LT~~g~~~ 69 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLI-YEKYRGLVLTSKGKKI 69 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE-EETTTEEEECHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE-EeeCceEEEchhHHHH
Confidence 789999999999999999999998887666542 2234679999988644
No 358
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=85.94 E-value=0.12 Score=38.78 Aligned_cols=58 Identities=14% Similarity=-0.001 Sum_probs=42.3
Q ss_pred CcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC----CCceeecCHhhhhh
Q 041250 10 GIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND----EEQGYVLTNASKLL 69 (259)
Q Consensus 10 ~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~----~~~~y~~t~~~~~l 69 (259)
.|+..|.. ++.+..||++.+|+++..+.+.|+.|...+++.... ..-.|.+|+.++.+
T Consensus 28 ~IL~~L~~--g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l 89 (146)
T 2f2e_A 28 LIVRDAFE--GLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRAL 89 (146)
T ss_dssp HHHHHHHT--TCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTT
T ss_pred HHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHH
Confidence 35556654 799999999999999999999888877665542111 13468999887644
No 359
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=85.89 E-value=0.063 Score=35.82 Aligned_cols=40 Identities=18% Similarity=0.384 Sum_probs=31.4
Q ss_pred cchhhhcC-----CCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250 11 IPDIINKH-----GKPMTLNELVSALTINLSKTQCFFAQQKLVSS 50 (259)
Q Consensus 11 lf~~L~~~-----~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~ 50 (259)
|++.|.+. |+|.|+.|||+.+|+++..+.+-|..|..-++
T Consensus 9 IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~ 53 (77)
T 2jt1_A 9 IISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGV 53 (77)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCc
Confidence 55566554 68999999999999999888888877765443
No 360
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=85.88 E-value=3.7 Score=34.62 Aligned_cols=83 Identities=18% Similarity=0.125 Sum_probs=51.2
Q ss_pred CeEEEecCCc--hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCCCccEEeehhhhccCChHHH
Q 041250 116 NSLVDVGGGT--GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISPAYAVLLKWILLDWNDEEC 191 (259)
Q Consensus 116 ~~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~~~~~~vlh~~~d~~~ 191 (259)
.+|.=||+|. +.++..+.+.....+++++|. ++.++.+.+..- +.-...|..+ -...+|+|++. .+....
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~-~~~~~~~~~~~~~~~aDvVila-----vp~~~~ 107 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-IDEGTTSIAKVEDFSPDFVMLS-----SPVRTF 107 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-CSEEESCTTGGGGGCCSEEEEC-----SCGGGH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC-cchhcCCHHHHhhccCCEEEEe-----CCHHHH
Confidence 5788899774 334444555433338999998 666666654211 1111233333 24468999887 444556
Q ss_pred HHHHHHHHHhccc
Q 041250 192 VKILKKCKEAITR 204 (259)
Q Consensus 192 ~~il~~~~~~L~p 204 (259)
..+++++...++|
T Consensus 108 ~~vl~~l~~~l~~ 120 (314)
T 3ggo_A 108 REIAKKLSYILSE 120 (314)
T ss_dssp HHHHHHHHHHSCT
T ss_pred HHHHHHHhhccCC
Confidence 7788999999988
No 361
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=85.87 E-value=0.1 Score=35.17 Aligned_cols=59 Identities=10% Similarity=0.060 Sum_probs=41.2
Q ss_pred HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC-CCCCceeecCHhh
Q 041250 6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-NDEEQGYVLTNAS 66 (259)
Q Consensus 6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~~~~~y~~t~~~ 66 (259)
.....|.+.|..+ + .|+.|||+++|++...+.+.|..|..-+++.. ...+-.|.++..+
T Consensus 17 ~~~~~IL~lL~~~-g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~~~~~ 76 (82)
T 1oyi_A 17 EIVCEAIKTIGIE-G-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHHSSS-T-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEESCC--
T ss_pred HHHHHHHHHHHHc-C-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCcceeccCc
Confidence 3456678889874 4 99999999999999999998887755444321 2344567766543
No 362
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=85.68 E-value=0.1 Score=37.21 Aligned_cols=59 Identities=19% Similarity=0.101 Sum_probs=43.4
Q ss_pred cCcchhhhcCCCCCCHHHHHHHc-CCCccccccceeccccccCCCCC-----CCCceeecCHhhhhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSAL-TINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLL 69 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~-~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l 69 (259)
+.|+..|.. ++.+..|||+.+ ++++..+.+.|+.|...+++... ...-.|.+|+.++.+
T Consensus 25 ~~IL~~L~~--~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~ 89 (112)
T 1z7u_A 25 LSLMDELFQ--GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYAL 89 (112)
T ss_dssp HHHHHHHHH--SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHH
Confidence 345666765 799999999999 99999999988887665544211 122359999988744
No 363
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=85.68 E-value=0.13 Score=38.63 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhh
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNAS 66 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~ 66 (259)
++ |.++||+..++++..+.++|..|.-.+++......|.|.+....
T Consensus 23 ~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG~GGy~Lar~p 68 (145)
T 1xd7_A 23 KT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGASLKKDP 68 (145)
T ss_dssp CC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSCEESSCG
T ss_pred CC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecCCCCceecCCH
Confidence 35 99999999999999999999988776655332227789887654
No 364
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=85.58 E-value=0.081 Score=39.04 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=45.0
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHc-CCCccccccceeccccccCCCCC-----CCCceeecCHhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSAL-TINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLL 69 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~-~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l 69 (259)
.++.|+..|.. ++.+..||++.+ |+++..+.+.|+.|...+++... ...-.|.+|+.++.+
T Consensus 36 w~l~IL~~L~~--g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l 102 (131)
T 1yyv_A 36 WGVLILVALRD--GTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQV 102 (131)
T ss_dssp HHHHHHHHGGG--CCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHH
T ss_pred cHHHHHHHHHc--CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHH
Confidence 34456667764 799999999999 79999999999887766654211 122369999988754
No 365
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=84.99 E-value=0.15 Score=37.74 Aligned_cols=63 Identities=10% Similarity=0.067 Sum_probs=45.7
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~ 70 (259)
.++.++..|... ++.|..+||+.+++++..+.+.++.+..-+++..+ .....+.+|+.++.+.
T Consensus 41 ~~~~iL~~l~~~-~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 41 TEWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHS-SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence 355667777764 69999999999999999999998887766554222 1234588999887544
No 366
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=84.91 E-value=0.16 Score=37.42 Aligned_cols=63 Identities=8% Similarity=0.071 Sum_probs=42.4
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCC---ceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEE---QGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~---~~y~~t~~~~~l~ 70 (259)
.++.++..|... ++.|..+||+.+++++..+.++++.|..-+++... ..+ -.+.+|+.++.+.
T Consensus 38 ~~~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 38 PDVHVLKLIDEQ-RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp HHHHHHHHHHHT-TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHH
Confidence 455677778775 68999999999999999999999887766654221 112 2478898887543
No 367
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=84.89 E-value=0.082 Score=34.92 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=34.7
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccc
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQK 46 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~ 46 (259)
.+-.|++.|.+.|.|++..|||+++|++...+.+.|..|.
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3556888999888999999999999999999999887764
No 368
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=84.69 E-value=0.15 Score=37.44 Aligned_cols=49 Identities=18% Similarity=0.145 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250 19 GKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL 69 (259)
Q Consensus 19 ~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l 69 (259)
+++.|..+||+.+++++..+.+.++.+..-+++ +...+.|.+|+.+..+
T Consensus 29 ~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli--~r~~~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLV--KKKEDGVWITNNGTRS 77 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEETTEEEECHHHHHH
T ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCE--EecCCeEEEChhHHHH
Confidence 378999999999999999999988887766654 2222779999988744
No 369
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=84.64 E-value=0.094 Score=36.28 Aligned_cols=61 Identities=10% Similarity=0.016 Sum_probs=45.1
Q ss_pred HcCcchhhhcCCCCCCHHHH----HHHcCCCccccccceeccccccCCCC--CCCCceeecCHhhhhh
Q 041250 8 QLGIPDIINKHGKPMTLNEL----VSALTINLSKTQCFFAQQKLVSSGNN--NDEEQGYVLTNASKLL 69 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~el----A~~~~~~~~~l~~ll~~~~~~~~~~~--~~~~~~y~~t~~~~~l 69 (259)
++.++..|... ++.|..|| |+.+++++..+.++++.|...+++.. +.....|.+|+.++.+
T Consensus 10 q~~iL~~l~~~-~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~ 76 (99)
T 1tbx_A 10 EAIVLAYLYDN-EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLF 76 (99)
T ss_dssp HHHHHHHHTTC-TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHH
Confidence 45567777764 78999999 99999999999999888776554421 1234468899888744
No 370
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=84.48 E-value=0.13 Score=38.21 Aligned_cols=64 Identities=5% Similarity=0.008 Sum_probs=44.4
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCC---ceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEE---QGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~---~~y~~t~~~~~l~ 70 (259)
.++.++..|...++++|..+||+.+++++..+.++++.|..-+++... ..+ -.+.+|+.++.+.
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence 345566777654457899999999999999999999888766654221 112 2378898887553
No 371
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=84.07 E-value=0.24 Score=37.35 Aligned_cols=63 Identities=8% Similarity=-0.048 Sum_probs=46.6
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--CCC---CceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--NDE---EQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~~---~~~y~~t~~~~~l~ 70 (259)
.++.|+..|... +++|..+||+.+++++..+.++++.|..-+++.. ... .-.+.+|+.++.+.
T Consensus 47 ~q~~iL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 47 PQFTALSVLAAK-PNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 345577778765 7899999999999999999999988776655421 112 23588999988554
No 372
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=83.89 E-value=0.16 Score=34.78 Aligned_cols=59 Identities=15% Similarity=0.037 Sum_probs=41.5
Q ss_pred cchhhhcCCCCCCHHHHHHHcCCCccc-cccceeccccccCCCCC---CCCceeecCHhhhhh
Q 041250 11 IPDIINKHGKPMTLNELVSALTINLSK-TQCFFAQQKLVSSGNNN---DEEQGYVLTNASKLL 69 (259)
Q Consensus 11 lf~~L~~~~~~~t~~elA~~~~~~~~~-l~~ll~~~~~~~~~~~~---~~~~~y~~t~~~~~l 69 (259)
++..|...+++.|..|||+.+++++.. +.+.++.+...+++..+ ...-.+.+|+.++.+
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~ 82 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRL 82 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHH
Confidence 444555542379999999999999999 99988887665554211 122357889888744
No 373
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=83.89 E-value=0.18 Score=36.69 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=45.5
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC-----CCCCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-----NDEEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-----~~~~~~y~~t~~~~~l~ 70 (259)
.++.++..|... ++.|..+||+.+++++..+.+.++.+...+++.. +...-.+.+|+.++.+.
T Consensus 34 ~~~~iL~~l~~~-~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 34 VQFGVIQVLAKS-GKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 345567777764 7899999999999999999998887766554421 11223478899887543
No 374
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=83.82 E-value=6.1 Score=33.98 Aligned_cols=95 Identities=15% Similarity=0.048 Sum_probs=60.3
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeC----CCCC---CC--CCccEEeeh
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGG----DMFK---AI--SPAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~----d~~~---~~--~~~D~~~~~ 180 (259)
++...+||=+|+|. |.++..+++...--+++++|. ++-.+.+++......+-.. |+.+ .. .++|+++-.
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~ 270 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFEC 270 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEEC
Confidence 56667888888764 888888888764337999996 7777777763221111111 1111 01 158887754
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCC-cEEEEEeee
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKK-RKVIIKDMI 217 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~g-g~lli~e~~ 217 (259)
- .. ...++.+.+.+++ | |+++++-..
T Consensus 271 ~-----g~---~~~~~~~~~~l~~---g~G~iv~~G~~ 297 (378)
T 3uko_A 271 I-----GN---VSVMRAALECCHK---GWGTSVIVGVA 297 (378)
T ss_dssp S-----CC---HHHHHHHHHTBCT---TTCEEEECSCC
T ss_pred C-----CC---HHHHHHHHHHhhc---cCCEEEEEccc
Confidence 2 22 2457888889998 7 998887653
No 375
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=83.78 E-value=7.7 Score=30.08 Aligned_cols=91 Identities=12% Similarity=-0.003 Sum_probs=57.6
Q ss_pred ecCCchHHHHHHHHHC--CCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC----CCCccEEeehhhhc--cCChHHH
Q 041250 121 VGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA----ISPAYAVLLKWILL--DWNDEEC 191 (259)
Q Consensus 121 vGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~----~~~~D~~~~~~vlh--~~~d~~~ 191 (259)
|=||+|.++..++++. .+.++++++. +...... ...+++++.+|+.++ ..++|+++..-... .......
T Consensus 5 VtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~n 82 (224)
T 3h2s_A 5 VLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR--LGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGYLH 82 (224)
T ss_dssp EETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--TCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTHHH
T ss_pred EEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc--cCCCceEEecccccccHhhcccCCEEEECCccCCCcchhhHH
Confidence 3356677777766642 3568888887 4333322 346899999999874 23588777554331 1123445
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEe
Q 041250 192 VKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 192 ~~il~~~~~~L~p~~~gg~lli~e 215 (259)
....+++.++++.. |++++++-
T Consensus 83 ~~~~~~l~~a~~~~--~~~~v~~S 104 (224)
T 3h2s_A 83 LDFATHLVSLLRNS--DTLAVFIL 104 (224)
T ss_dssp HHHHHHHHHTCTTC--CCEEEEEC
T ss_pred HHHHHHHHHHHHHc--CCcEEEEe
Confidence 67788888888863 57777774
No 376
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=83.18 E-value=7.6 Score=31.86 Aligned_cols=83 Identities=11% Similarity=0.111 Sum_probs=49.2
Q ss_pred CeEEEecCCc--hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHHH
Q 041250 116 NSLVDVGGGT--GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEECV 192 (259)
Q Consensus 116 ~~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~~ 192 (259)
.+|.=||+|. +.++..+.+..++.+++++|. ++..+.+.+... +.....|..+....+|+|++. .+.....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~-~~~~~~~~~~~~~~aDvVila-----vp~~~~~ 80 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGI-VDEATADFKVFAALADVIILA-----VPIKKTI 80 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTS-CSEEESCTTTTGGGCSEEEEC-----SCHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCC-cccccCCHHHhhcCCCEEEEc-----CCHHHHH
Confidence 4688889886 334444555555678999998 565555543111 101122332223358988887 4555556
Q ss_pred HHHHHHHHh-ccc
Q 041250 193 KILKKCKEA-ITR 204 (259)
Q Consensus 193 ~il~~~~~~-L~p 204 (259)
.+++++... +++
T Consensus 81 ~v~~~l~~~~l~~ 93 (290)
T 3b1f_A 81 DFIKILADLDLKE 93 (290)
T ss_dssp HHHHHHHTSCCCT
T ss_pred HHHHHHHhcCCCC
Confidence 778888777 777
No 377
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=82.99 E-value=0.2 Score=37.60 Aligned_cols=62 Identities=8% Similarity=-0.004 Sum_probs=44.7
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC-----CCceeecCHhhhhhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND-----EEQGYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~-----~~~~y~~t~~~~~l~ 70 (259)
++.|+..|... ++.|..+||+.+++++..+.+.++.|..-+++.... ....|.+|+.++.+.
T Consensus 51 ~~~iL~~l~~~-~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 51 EWRVITILALY-PGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHS-TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 45567777764 789999999999999999999888877666542211 123578898887543
No 378
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=82.91 E-value=1.6 Score=37.32 Aligned_cols=97 Identities=12% Similarity=0.073 Sum_probs=62.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCe-EEEeec-hHHHhhcccCCCCeEEEeCCCCC----CCCCccEEeehhhhccCCh
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLESDLVNLKYVGGDMFK----AISPAYAVLLKWILLDWND 188 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~----~~~~~D~~~~~~vlh~~~d 188 (259)
..+++|+-||.|.++..+.++ +.+ +..+|+ +.+++..+...+... .+|+.+ ..+.+|+++...-+..++.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence 468999999999999999887 455 566888 666666554111111 577776 2456899998866555531
Q ss_pred --------HHHHHHHHH---HHHhcccCCCCcEEEEEeeeecC
Q 041250 189 --------EECVKILKK---CKEAITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 189 --------~~~~~il~~---~~~~L~p~~~gg~lli~e~~~~~ 220 (259)
+..-.++.+ +.+.++| ++++.|.+..-
T Consensus 87 ag~~~g~~d~r~~L~~~~~r~i~~~~P-----~~~~~ENV~gl 124 (327)
T 2c7p_A 87 SGKQKGFEDSRGTLFFDIARIVREKKP-----KVVFMENVKNF 124 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHHHHHHHHCC-----SEEEEEEEGGG
T ss_pred hcccCCCcchhhHHHHHHHHHHHhccC-----cEEEEeCcHHH
Confidence 111123333 3334566 58899988653
No 379
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=82.86 E-value=0.09 Score=36.62 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=40.7
Q ss_pred HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCceeecCHhh
Q 041250 6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQGYVLTNAS 66 (259)
Q Consensus 6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~~y~~t~~~ 66 (259)
-.++.|+..|... ++.|+.|||+.+|+++..+++-|+.+... ++..+ ...-.|++++..
T Consensus 27 ~~Rl~IL~~l~~~-~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~ 87 (99)
T 2zkz_A 27 PMRLKIVNELYKH-KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPK 87 (99)
T ss_dssp HHHHHHHHHHHHH-SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHH
T ss_pred HHHHHHHHHHHHC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHH
Confidence 4677788544332 79999999999999999999977766554 43212 222358887654
No 380
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=82.80 E-value=1.5 Score=37.39 Aligned_cols=106 Identities=8% Similarity=0.019 Sum_probs=67.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCe-E-EEeec-hHHHhhcccCCCCeEEEeCCCCC-C---CC--CccEEeehhhhc
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLE-C-TCFDL-PHVVNGLESDLVNLKYVGGDMFK-A---IS--PAYAVLLKWILL 184 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~-~-~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~---~~--~~D~~~~~~vlh 184 (259)
..-+++|+-||.|.+...+.++.-+.+ + ..+|+ +.+++..+...+.. ++.+|+.+ . ++ .+|+++...-..
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ 87 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPCQ 87 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCCT
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCcc
Confidence 346899999999999999998742234 4 58998 66666655421111 56778876 2 23 489999776655
Q ss_pred cC--C--------hHHHHHHHHHHHH-hcccCCCCcEEEEEeeeecC
Q 041250 185 DW--N--------DEECVKILKKCKE-AITRDGKKRKVIIKDMIKEN 220 (259)
Q Consensus 185 ~~--~--------d~~~~~il~~~~~-~L~p~~~gg~lli~e~~~~~ 220 (259)
.+ + ++..-.++.++.+ .++.....-+++++|.+..-
T Consensus 88 ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl 134 (327)
T 3qv2_A 88 PYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLF 134 (327)
T ss_dssp TCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGG
T ss_pred CcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhh
Confidence 55 1 1222356666666 55420001478999988653
No 381
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=82.70 E-value=0.26 Score=36.26 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=46.2
Q ss_pred HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250 6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL 70 (259)
Q Consensus 6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~ 70 (259)
..++.++..|....++.|..+||+.+++++..+.+.++.|..-+++... ...-.+.+|+.++.+.
T Consensus 35 ~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 35 FSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence 3456677777751279999999999999999999988887665544211 1223488999887543
No 382
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=82.42 E-value=0.36 Score=37.15 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=44.9
Q ss_pred HHcCcchhhhcCCCC--CCHHHHHHHcCCCccccccceeccccccCCCCCC--CC---ceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKP--MTLNELVSALTINLSKTQCFFAQQKLVSSGNNND--EE---QGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~--~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~--~~---~~y~~t~~~~~l~ 70 (259)
.++.|+..|...+++ +|..+||+.+++++..+.++++.|...+++.... .+ -.+.+|+.++.+.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345567777654333 9999999999999999999998877665542221 12 2478899887543
No 383
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=82.29 E-value=8.8 Score=32.62 Aligned_cols=93 Identities=11% Similarity=0.044 Sum_probs=59.6
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEeC-----CCCCC-----CCCccEEe
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGG-----DMFKA-----ISPAYAVL 178 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~-----d~~~~-----~~~~D~~~ 178 (259)
+....+||-+|+|. |.++..+++...--++++.|. ++-.+.+++. .+.+ +-.. ++.+. ..++|+++
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~~i~~~~~~g~D~vi 247 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLV-LQISKESPQEIARKVEGQLGCKPEVTI 247 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEE-EECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEE-EcCcccccchHHHHHHHHhCCCCCEEE
Confidence 56678899999876 889999999874338999996 6666777653 2322 1111 11111 02488876
Q ss_pred ehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 179 LKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 179 ~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
-.- ... ..++...+.|+| +|+++++-.
T Consensus 248 d~~-----g~~---~~~~~~~~~l~~---~G~iv~~G~ 274 (356)
T 1pl8_A 248 ECT-----GAE---ASIQAGIYATRS---GGTLVLVGL 274 (356)
T ss_dssp ECS-----CCH---HHHHHHHHHSCT---TCEEEECSC
T ss_pred ECC-----CCh---HHHHHHHHHhcC---CCEEEEEec
Confidence 442 221 356778889999 999988754
No 384
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=82.23 E-value=7.8 Score=33.24 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=60.5
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeE-EEeCCCCC---C---C-C-CccEEee
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLK-YVGGDMFK---A---I-S-PAYAVLL 179 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~-~~~~d~~~---~---~-~-~~D~~~~ 179 (259)
+....+||=+|+|. |.++..+++....-++++.|. ++-.+.+++ ..+.+- ....|+.+ . . + ++|+++-
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid 259 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIE 259 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEE
Confidence 55667888888876 888899998874438999987 666666665 222211 01112211 1 1 1 5888775
Q ss_pred hhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 180 KWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
.- ... ..++.+.+.|++ +|+++++-...
T Consensus 260 ~~-----G~~---~~~~~~~~~l~~---~G~vv~~G~~~ 287 (370)
T 4ej6_A 260 CA-----GVA---ETVKQSTRLAKA---GGTVVILGVLP 287 (370)
T ss_dssp CS-----CCH---HHHHHHHHHEEE---EEEEEECSCCC
T ss_pred CC-----CCH---HHHHHHHHHhcc---CCEEEEEeccC
Confidence 42 211 357888889999 99998876543
No 385
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=82.21 E-value=6.2 Score=30.46 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=56.3
Q ss_pred eEEEecCCchHHHHHHHHHC--CCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC----CCCccEEeehhhhccCChH
Q 041250 117 SLVDVGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA----ISPAYAVLLKWILLDWNDE 189 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~----~~~~D~~~~~~vlh~~~d~ 189 (259)
+||=. ||+|.++..++++. .+.++++++. ++...... .+++++.+|+.++ +.++|+++..-.......+
T Consensus 2 kvlVt-GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~ 77 (221)
T 3ew7_A 2 KIGII-GATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAE 77 (221)
T ss_dssp EEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTT
T ss_pred eEEEE-cCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---CCCeEEeccccChhhhhhcCCCEEEECCcCCccccc
Confidence 34433 55666666665542 2468888887 33332221 6899999999874 2358887765433222223
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 190 ECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 190 ~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
......+++.++++.. +.++++++-.
T Consensus 78 ~~~~~~~~l~~a~~~~-~~~~~v~~SS 103 (221)
T 3ew7_A 78 KHVTSLDHLISVLNGT-VSPRLLVVGG 103 (221)
T ss_dssp SHHHHHHHHHHHHCSC-CSSEEEEECC
T ss_pred hHHHHHHHHHHHHHhc-CCceEEEEec
Confidence 3456677777777752 1467776654
No 386
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=82.12 E-value=0.2 Score=36.96 Aligned_cols=63 Identities=6% Similarity=-0.050 Sum_probs=46.1
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CC---CceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DE---EQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~---~~~y~~t~~~~~l~ 70 (259)
.++.++..|... ++.|..+||+.+++++..+.++++.+..-+++... .. .-.+.+|+.++.+.
T Consensus 32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 32 NLFAVLYTLATE-GSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 345567777654 68999999999999999999998887766554211 12 23589999988553
No 387
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=82.07 E-value=0.06 Score=38.69 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=36.9
Q ss_pred HHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 6 AFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 6 a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
-.++.|+..|.+ ++.|+.+||+.+|+++..+++.+..|...+++
T Consensus 32 ~~~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~~Glv 75 (119)
T 2lkp_A 32 PSRLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLV 75 (119)
T ss_dssp HHHHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 356788889986 68999999999999999999988887665543
No 388
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=82.04 E-value=0.26 Score=36.72 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=45.6
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC-----CCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND-----EEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~-----~~~~y~~t~~~~~l~ 70 (259)
.++.++..|... ++.|..+||+.+++++..+.++++.|...+++.... ..-.+.+|+.++.+.
T Consensus 44 ~~~~iL~~l~~~-~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 44 PEWRVLACLVDN-DAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHHSSC-SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence 345567777764 789999999999999999999988877665542111 123488999887543
No 389
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=81.89 E-value=0.19 Score=35.37 Aligned_cols=58 Identities=17% Similarity=-0.007 Sum_probs=42.4
Q ss_pred CcchhhhcCCCCCCHHHHHHHc-CCCccccccceeccccccCCCCC-----CCCceeecCHhhhhh
Q 041250 10 GIPDIINKHGKPMTLNELVSAL-TINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLL 69 (259)
Q Consensus 10 ~lf~~L~~~~~~~t~~elA~~~-~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l 69 (259)
.|+..|.. ++.+..||++.+ |+++..+.+.|+.|...+++... ...-.|.+|+.++.+
T Consensus 29 ~IL~~L~~--~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l 92 (107)
T 2fsw_A 29 LIIFQINR--RIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKV 92 (107)
T ss_dssp HHHHHHTT--SCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTT
T ss_pred HHHHHHHh--CCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHH
Confidence 35566664 799999999999 59999999988887766654211 112359999988644
No 390
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=81.71 E-value=2.3 Score=36.22 Aligned_cols=89 Identities=17% Similarity=0.085 Sum_probs=59.8
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEeCCCCCCCC-CccEEeehhhhccCC
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGGDMFKAIS-PAYAVLLKWILLDWN 187 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~~~~-~~D~~~~~~vlh~~~ 187 (259)
.....+||-+|+|. |.++..+++.. +.++++.|. ++-.+.+++. .+.+- .|. +... ++|+++-.- .
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~---~~~-~~~~~~~D~vid~~-----g 243 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGVKHFY---TDP-KQCKEELDFIISTI-----P 243 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTCSEEE---SSG-GGCCSCEEEEEECC-----C
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCeec---CCH-HHHhcCCCEEEECC-----C
Confidence 66678888899876 88899999887 469999986 6666666653 33322 221 1122 688877432 1
Q ss_pred hHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 188 DEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 188 d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.+ ..++.+.+.|+| +|+++++-.
T Consensus 244 ~~---~~~~~~~~~l~~---~G~iv~~G~ 266 (348)
T 3two_A 244 TH---YDLKDYLKLLTY---NGDLALVGL 266 (348)
T ss_dssp SC---CCHHHHHTTEEE---EEEEEECCC
T ss_pred cH---HHHHHHHHHHhc---CCEEEEECC
Confidence 11 246778889999 999988754
No 391
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=81.37 E-value=0.16 Score=37.19 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=45.0
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~ 70 (259)
++.|+..|... ++.|..+||+.+++++..+.+.++.|..-+++... ...-.+.+|+.++.+.
T Consensus 39 ~~~iL~~l~~~-~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 39 QFLVLTILWDE-SPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHS-SEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence 45567777764 68999999999999999999988887665544211 1222578899887543
No 392
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=81.14 E-value=0.16 Score=33.93 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=35.6
Q ss_pred HcCcchhhhcCC-CCCCHHHHHHHc-----CCCccccccceeccccccCC
Q 041250 8 QLGIPDIINKHG-KPMTLNELVSAL-----TINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 8 ~l~lf~~L~~~~-~~~t~~elA~~~-----~~~~~~l~~ll~~~~~~~~~ 51 (259)
+..|++.|.+.+ ++.|++||++.+ +++...+.|.|..+...+++
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 455788887644 689999999999 99999999988887666544
No 393
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=80.73 E-value=0.16 Score=37.28 Aligned_cols=63 Identities=8% Similarity=0.044 Sum_probs=45.2
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~ 70 (259)
.++.++..|... ++.|..|||+.+++++..+.++++.+..-+++... ...-.+.+|+.++.+.
T Consensus 37 ~q~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 37 TGYIVLMAIEND-EKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHHSCTT-CEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 345566677654 79999999999999999999998887765544211 1223588999987543
No 394
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=80.69 E-value=0.26 Score=35.94 Aligned_cols=63 Identities=14% Similarity=0.038 Sum_probs=46.4
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~ 70 (259)
.++.++..|... ++.|..+||+.+++++..+.+.++.+..-+++... ...-.|.+|+.++.+.
T Consensus 32 ~~~~iL~~l~~~-~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKD-APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345577777764 68999999999999999999988877665543211 2233589999998665
No 395
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=80.67 E-value=2 Score=36.55 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=62.2
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEeCCCCCC---C--C-CccEEeehhh
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGGDMFKA---I--S-PAYAVLLKWI 182 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~~---~--~-~~D~~~~~~v 182 (259)
.....+||-+|+|. |.++..+++.....+++++|. ++-.+.+++. .+.+--...|+.+. . . ++|+++-.
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~-- 246 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDF-- 246 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEES--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEEC--
Confidence 56677888888766 899999999876789999997 6777777763 23221111122111 1 1 47877653
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
...+ ..++.+.+.|++ +|+++++-.
T Consensus 247 ---~G~~---~~~~~~~~~l~~---~G~iv~~G~ 271 (345)
T 3jv7_A 247 ---VGAQ---STIDTAQQVVAV---DGHISVVGI 271 (345)
T ss_dssp ---SCCH---HHHHHHHHHEEE---EEEEEECSC
T ss_pred ---CCCH---HHHHHHHHHHhc---CCEEEEECC
Confidence 2222 367888899999 999988764
No 396
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=80.59 E-value=0.23 Score=37.16 Aligned_cols=64 Identities=9% Similarity=0.053 Sum_probs=45.0
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--C---CCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--D---EEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~---~~~~y~~t~~~~~l~ 70 (259)
.++.|+..|...+++.|..+||+.+++++..+.++++.|..-+++... . ..-.+.+|+.++.+.
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 355677788322378999999999999999999998887666554211 1 122478999887543
No 397
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=80.51 E-value=0.33 Score=35.61 Aligned_cols=62 Identities=8% Similarity=-0.017 Sum_probs=44.8
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~ 70 (259)
.++.++..|. . ++.|..+||+.+++++..+.+.++.+..-+++... ...-.+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~-~-~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 38 LDFLVLRATS-D-GPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHT-T-SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHh-c-CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 3455677777 3 79999999999999999999988887665544211 1223478899887543
No 398
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=80.48 E-value=0.17 Score=36.77 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=36.1
Q ss_pred HHcCcchhhhcCCCC-CCHHHHHHHcCCCccccccceeccccccCC
Q 041250 7 FQLGIPDIINKHGKP-MTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~-~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
.+..|+..|...++| .|+.|||+.++++...+.|.+..|...+++
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV 72 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEIL 72 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 355677888765456 999999999999999999988887766554
No 399
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=80.26 E-value=0.17 Score=37.20 Aligned_cols=63 Identities=10% Similarity=-0.021 Sum_probs=46.1
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC-----CCCCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-----NDEEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-----~~~~~~y~~t~~~~~l~ 70 (259)
.++.++..|... ++.|..|||+.+++++..+.++++.+..-+++.. +...-.+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 38 EQWSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence 355567777754 7999999999999999999999888776655421 11223588999987553
No 400
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=80.04 E-value=7.7 Score=33.19 Aligned_cols=95 Identities=18% Similarity=0.102 Sum_probs=60.6
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEE-EeCCCCCC----CC-CccEEeehhh
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKY-VGGDMFKA----IS-PAYAVLLKWI 182 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~-~~~d~~~~----~~-~~D~~~~~~v 182 (259)
+....+||-+|+|. |.++..+++....-+++++|. ++-.+.+++ ..+.+-- ...|+.+. .+ ++|+++-.-
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~- 266 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST- 266 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECC-
Confidence 56678999999887 889999998763336899986 666777765 2222210 01122111 11 488876442
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.. ...++.+.+.|++ +|+++++-..
T Consensus 267 ----g~---~~~~~~~~~~l~~---~G~iv~~G~~ 291 (371)
T 1f8f_A 267 ----GS---PEILKQGVDALGI---LGKIAVVGAP 291 (371)
T ss_dssp ----CC---HHHHHHHHHTEEE---EEEEEECCCC
T ss_pred ----CC---HHHHHHHHHHHhc---CCEEEEeCCC
Confidence 11 1457888899999 8998887653
No 401
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=79.58 E-value=0.22 Score=36.36 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=45.7
Q ss_pred HHcCcchhhhcCC-CCCCHHHHHHHcCCCccccccceeccccccCCCC--CC---CCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHG-KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--ND---EEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~-~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~---~~~~y~~t~~~~~l~ 70 (259)
.++.++..|...+ ++.|..+||+.+++++..+.++++.+..-+++.. .. ..-.+.+|+.++.+.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHH
Confidence 3455667776642 4899999999999999999999888766554421 11 223578899888554
No 402
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=79.58 E-value=2.9 Score=35.92 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=58.9
Q ss_pred CCCeEEEec--CCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCC-CCeEEEeCCCCC---CC--CCccEEeehhhhc
Q 041250 114 GLNSLVDVG--GGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDL-VNLKYVGGDMFK---AI--SPAYAVLLKWILL 184 (259)
Q Consensus 114 ~~~~vlDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~ri~~~~~d~~~---~~--~~~D~~~~~~vlh 184 (259)
...+||=+| ||.|.++..+++...+.++++.|. ++-.+.+++.. +.+--...|+.+ .. .++|+++-.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~---- 246 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFST---- 246 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEEC----
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEEC----
Confidence 456788887 667999999999866789999998 66677776522 222111111111 11 148877653
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEe
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKD 215 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e 215 (259)
... ...++.+.+.|++ +|+++++.
T Consensus 247 -~g~---~~~~~~~~~~l~~---~G~iv~~g 270 (363)
T 4dvj_A 247 -THT---DKHAAEIADLIAP---QGRFCLID 270 (363)
T ss_dssp -SCH---HHHHHHHHHHSCT---TCEEEECS
T ss_pred -CCc---hhhHHHHHHHhcC---CCEEEEEC
Confidence 222 2467888889999 99998873
No 403
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=79.38 E-value=0.16 Score=37.02 Aligned_cols=63 Identities=11% Similarity=0.038 Sum_probs=45.7
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCC---ceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEE---QGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~---~~y~~t~~~~~l~ 70 (259)
.++.|+..|... ++.|..+||+.+++++..+.+.++.+...+++... ..+ -.|.+|+.++.+.
T Consensus 39 ~~~~iL~~l~~~-~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 39 TQWAALVRLGET-GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHH-SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 355677777654 68999999999999999999999887766554211 112 2478898887543
No 404
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=79.36 E-value=0.19 Score=36.57 Aligned_cols=62 Identities=10% Similarity=0.071 Sum_probs=44.9
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCc---eeecCHhhhhhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQ---GYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~---~y~~t~~~~~l~ 70 (259)
++.++..|... ++.|..|||+.+++++..+.+.++.+..-+++... ..++ .+.+|+.++.+.
T Consensus 31 ~~~iL~~l~~~-~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 31 QVACLLRIHRE-PGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHS-TTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence 45566777764 78999999999999999999988887766554211 1222 378898887543
No 405
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.22 E-value=0.29 Score=35.84 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=43.8
Q ss_pred HcCcchhh-hcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250 8 QLGIPDII-NKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L-~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~ 70 (259)
++.++..| .. +++.|..+||+.+++++..+.+.++.|..-+++... ...-.+.+|+.++.+.
T Consensus 39 ~~~iL~~l~~~-~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 39 RWLVLLHLARH-RDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp HHHHHHHHHHC-SSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 34566777 44 378999999999999999999988877665543211 1223478888887443
No 406
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=79.17 E-value=0.32 Score=35.97 Aligned_cols=63 Identities=6% Similarity=-0.021 Sum_probs=38.7
Q ss_pred HcCcchhhhcCC-CCCCHHHHHHHcCCCccccccceeccccccCCCCCC--CC---ceeecCHhhhhhh
Q 041250 8 QLGIPDIINKHG-KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND--EE---QGYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~~-~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~--~~---~~y~~t~~~~~l~ 70 (259)
++.++..|...+ ++.|..+||+.+++++..+.++++.|..-+++.... .+ -.+.+|+.++.+.
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 345566666532 689999999999999999999999887766653221 12 2478888887543
No 407
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=78.83 E-value=0.24 Score=36.86 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=45.6
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC-----CCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND-----EEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~-----~~~~y~~t~~~~~l~ 70 (259)
.++.|+..|... ++.|..+||+.+++++..+.++++.|..-+++.... ..-.+.+|+.++.+.
T Consensus 48 ~~~~iL~~l~~~-~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 115 (153)
T 2pex_A 48 PQYLVMLVLWET-DERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALR 115 (153)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGG
T ss_pred HHHHHHHHHHhC-CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHH
Confidence 345567777764 789999999999999999999988877665542111 122588899988554
No 408
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=78.81 E-value=0.27 Score=35.77 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=44.3
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--CCCC---ceeecCHhhhhhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--NDEE---QGYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~~~---~~y~~t~~~~~l~ 70 (259)
++.++..|... ++.|..+||+.+++++..+.++++.+..-+++.. ...+ -.+.+|+.++.+.
T Consensus 36 ~~~iL~~l~~~-~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 36 QFKVLCSIRCA-ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence 44566677653 6899999999999999999998888766554421 1122 2478899887543
No 409
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=78.72 E-value=0.34 Score=35.31 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=43.7
Q ss_pred HcCcchhhhcCCC-CCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhh
Q 041250 8 QLGIPDIINKHGK-PMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLL 69 (259)
Q Consensus 8 ~l~lf~~L~~~~~-~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l 69 (259)
++.++..|...++ +.|..+||+.+++++..+.++++.|..-+++... ...-.+.+|+.++.+
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~ 103 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKL 103 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTT
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHH
Confidence 4456667766422 7999999999999999999988887665544211 122257788888744
No 410
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=78.48 E-value=0.19 Score=36.88 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=45.5
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCc---eeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQ---GYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~---~y~~t~~~~~l~ 70 (259)
.++.++..|... ++.|..+||+.+++++..+.+.++.+...+++... ..++ .|.+|+.++.+.
T Consensus 34 ~~~~iL~~l~~~-~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 34 AQFDILQKIYFE-GPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence 345566777653 78999999999999999999998887766554211 1122 478899887554
No 411
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=78.13 E-value=0.43 Score=34.96 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=43.8
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC-----CCceeecCHhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND-----EEQGYVLTNASKLL 69 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~-----~~~~y~~t~~~~~l 69 (259)
.++.|+..|... + .|..|||+.+++++..+.+.++.|..-|++.... ..-.+.+|+.+..+
T Consensus 39 ~~~~iL~~l~~~-~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~ 104 (146)
T 3tgn_A 39 TQEHILMLLSEE-S-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPI 104 (146)
T ss_dssp HHHHHHHHHTTC-C-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHH
T ss_pred HHHHHHHHHHhC-C-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHH
Confidence 456677888873 4 9999999999999999999998877666542211 12357888887744
No 412
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=77.99 E-value=0.33 Score=36.02 Aligned_cols=61 Identities=10% Similarity=0.095 Sum_probs=43.7
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC----CCCC---ceeecCHhhhhhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN----NDEE---QGYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~----~~~~---~~y~~t~~~~~l~ 70 (259)
++.++..| .. ++.|..|||+.+++++..+.++++.|..-+++.. ...+ -.+.+|+.++.+.
T Consensus 40 q~~iL~~l-~~-~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SI-EALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HH-SCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHH-Hc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 44567777 43 8999999999999999999999888776665432 1122 2478898887544
No 413
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=77.98 E-value=0.3 Score=36.13 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=45.3
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~ 70 (259)
++.++..|... ++.|..+||+.+++++..+.+.++.|..-+++... ...-.+.+|+.++.+.
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 42 QRAILEGLSLT-PGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 45567777764 68999999999999999999988887665544211 1223578999887443
No 414
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=77.88 E-value=0.3 Score=36.70 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=45.9
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC-----CCCCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-----NDEEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-----~~~~~~y~~t~~~~~l~ 70 (259)
.++.|+..|... ++.|..+||+.+++++..+.++++.|..-+++.. +...-.+.+|+.++.+.
T Consensus 53 ~~~~iL~~l~~~-~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 53 AKMRALAILSAK-DGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 355677777764 7899999999999999999998888766554421 11223488999887543
No 415
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=77.85 E-value=0.3 Score=36.37 Aligned_cols=63 Identities=14% Similarity=0.064 Sum_probs=45.6
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--C---CCCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--N---DEEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~---~~~~~y~~t~~~~~l~ 70 (259)
.++.|+..|... ++.|..+||+.+++++..+.+.++.|...+++.. . ...-.+.+|+.++.+.
T Consensus 45 ~~~~iL~~l~~~-~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 45 TELYAFLYVALF-GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence 355677777764 6899999999999999999998888766554421 1 1223478899887543
No 416
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=77.78 E-value=0.24 Score=36.73 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=45.6
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~ 70 (259)
.++.++..|... ++.|..+||+.+++++..+.++++.|..-+++... ...-.+.+|+.++.+.
T Consensus 42 ~q~~iL~~l~~~-~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 42 SQYLVMLTLWEE-NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 355667777664 78999999999999999999999887766654321 1223588999887543
No 417
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=77.70 E-value=20 Score=28.85 Aligned_cols=94 Identities=11% Similarity=0.035 Sum_probs=56.3
Q ss_pred CeEEEecCCchHHHHHHHHHC--CCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CCCCccEEeehhhhccCChHHH
Q 041250 116 NSLVDVGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AISPAYAVLLKWILLDWNDEEC 191 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~~~~~~vlh~~~d~~~ 191 (259)
.+||=.| + |.++..++++. .+.++++++. +.-..... ..+++++.+|+.+ ...++|+++.........+...
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~~~~ 81 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR--ASGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVL 81 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH--HTTEEEEESSSSCCCCTTCCEEEECCCCBTTBCHHH
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh--hCCCeEEEecccccccCCCCEEEECCCccccccHHH
Confidence 4788888 4 88888887754 2457888887 33222221 3579999999877 4446888776554443333333
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEee
Q 041250 192 VKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 192 ~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
..+++.+.+.-.. -.+++.+-.
T Consensus 82 ~~l~~a~~~~~~~---~~~~v~~Ss 103 (286)
T 3ius_A 82 AALGDQIAARAAQ---FRWVGYLST 103 (286)
T ss_dssp HHHHHHHHHTGGG---CSEEEEEEE
T ss_pred HHHHHHHHhhcCC---ceEEEEeec
Confidence 4455544442122 356666554
No 418
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=77.60 E-value=1.8 Score=37.02 Aligned_cols=102 Identities=9% Similarity=0.092 Sum_probs=66.3
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCe-EEEeec-hHHHhhcccCCCCeEEEeCCCCC-C---CC--CccEEeehhhhccCC
Q 041250 116 NSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLESDLVNLKYVGGDMFK-A---IS--PAYAVLLKWILLDWN 187 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~---~~--~~D~~~~~~vlh~~~ 187 (259)
-+++|+=||.|.+...+.++.-+.+ +..+|+ +.+++..+...+...+..+|+.+ . ++ .+|+++...-...++
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS 83 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT 83 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence 4799999999999999998843334 567888 66666665544455667788876 2 23 489988776555543
Q ss_pred --------hHHHHHHHHHHHHhcccCCCC-cEEEEEeeeec
Q 041250 188 --------DEECVKILKKCKEAITRDGKK-RKVIIKDMIKE 219 (259)
Q Consensus 188 --------d~~~~~il~~~~~~L~p~~~g-g~lli~e~~~~ 219 (259)
++..-.++.++.+.++.. . -++++.|.+..
T Consensus 84 ~ag~~~~~~d~r~~L~~~~~r~i~~~--~~P~~~vlENV~g 122 (333)
T 4h0n_A 84 RNGKYLDDNDPRTNSFLYLIGILDQL--DNVDYILMENVKG 122 (333)
T ss_dssp ETTEECCTTCTTSCCHHHHHHHGGGC--TTCCEEEEEECTT
T ss_pred hhhhccCCcCcccccHHHHHHHHHHh--cCCCEEEEecchh
Confidence 111123555555555431 1 36899998754
No 419
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=77.56 E-value=0.29 Score=35.85 Aligned_cols=62 Identities=5% Similarity=-0.044 Sum_probs=44.5
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~ 70 (259)
++.++..|... ++.|..+||+.+++++..+.+.++.|..-+++... ...-.+.+|+.++.+.
T Consensus 31 ~~~iL~~l~~~-~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 31 QYLYLVRVCEN-PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 34466677664 68999999999999999999988877665543211 1223488999887543
No 420
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=77.47 E-value=11 Score=31.98 Aligned_cols=93 Identities=13% Similarity=0.097 Sum_probs=59.0
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEe---CCCCCC---------CCCccEE
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVG---GDMFKA---------ISPAYAV 177 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~---~d~~~~---------~~~~D~~ 177 (259)
+....+||-+|+|. |.++..+++.. +.++++.|. ++-.+.+++......+-. .|+.+. -.++|++
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~v 244 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 244 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEE
Confidence 55677888899875 88888888876 567888886 666676665322211211 122211 1247887
Q ss_pred eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+-.- ... ..++...+.|++ +|+++++-.
T Consensus 245 id~~-----g~~---~~~~~~~~~l~~---~G~iv~~G~ 272 (352)
T 1e3j_A 245 IDCS-----GNE---KCITIGINITRT---GGTLMLVGM 272 (352)
T ss_dssp EECS-----CCH---HHHHHHHHHSCT---TCEEEECSC
T ss_pred EECC-----CCH---HHHHHHHHHHhc---CCEEEEEec
Confidence 6442 222 356778889999 899988754
No 421
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=77.47 E-value=8.1 Score=32.71 Aligned_cols=94 Identities=22% Similarity=0.217 Sum_probs=58.8
Q ss_pred cCCCCeEEEecCC--chHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCC--C----CC-CC-CCccEEeeh
Q 041250 112 FEGLNSLVDVGGG--TGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGD--M----FK-AI-SPAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d--~----~~-~~-~~~D~~~~~ 180 (259)
.....+||-+|+| .|..+..+++..++.++++.|. ++-.+.+++......+-..+ + .+ .. .++|+++-.
T Consensus 168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 247 (347)
T 1jvb_A 168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDL 247 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEEC
Confidence 5667889999987 6778888888764678999997 66666665422111111111 1 00 01 247877644
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
- ... ..++.+.+.|++ +|+++++-.
T Consensus 248 ~-----g~~---~~~~~~~~~l~~---~G~iv~~g~ 272 (347)
T 1jvb_A 248 N-----NSE---KTLSVYPKALAK---QGKYVMVGL 272 (347)
T ss_dssp C-----CCH---HHHTTGGGGEEE---EEEEEECCS
T ss_pred C-----CCH---HHHHHHHHHHhc---CCEEEEECC
Confidence 2 221 357778889999 899887654
No 422
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=77.42 E-value=0.32 Score=38.01 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=39.8
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccC-CCCCCCCceeecCHh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS-GNNNDEEQGYVLTNA 65 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~-~~~~~~~~~y~~t~~ 65 (259)
-...|.+.|.+++++.|+.|||+++|++++.+.+=+..+...++ + ....+.|.+++.
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I--~~~~~Gy~l~~~ 79 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNI--VATPRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCC--EEETTEEECCTT
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE--EEECCEEEECCc
Confidence 34567888875446799999999999999999986666554443 2 222355766543
No 423
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=77.38 E-value=0.27 Score=36.29 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=44.4
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--CC---CCceeecCHhhhhhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--ND---EEQGYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~---~~~~y~~t~~~~~l~ 70 (259)
++.++..|... ++.|..+||+.+++++..+.+.++.|..-+++.. .. ..-.+.+|+.++.+.
T Consensus 44 ~~~iL~~l~~~-~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEE-GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 45566777654 6899999999999999999998888766554321 11 123478899887543
No 424
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=77.35 E-value=0.3 Score=33.47 Aligned_cols=48 Identities=8% Similarity=-0.006 Sum_probs=36.6
Q ss_pred CCHHHHHHHcCCCccccccceeccccccCCCC--CCCCceeecCHhhhhh
Q 041250 22 MTLNELVSALTINLSKTQCFFAQQKLVSSGNN--NDEEQGYVLTNASKLL 69 (259)
Q Consensus 22 ~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~~~~~y~~t~~~~~l 69 (259)
+|..+||+.+++++..+.++++.|..-+++.. +.....|.+|+.++.+
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~ 80 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKI 80 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHH
Confidence 99999999999999999999988776665411 1122358999988744
No 425
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=77.34 E-value=8.1 Score=32.56 Aligned_cols=94 Identities=12% Similarity=0.042 Sum_probs=57.9
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEE--EeCCCCCC---C-C--CccEEeehh
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKY--VGGDMFKA---I-S--PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~--~~~d~~~~---~-~--~~D~~~~~~ 181 (259)
.....+||=+|+|. |.++..+++..-..++++.|. ++-.+.+++......+ ...|+.+. . . ++|.++...
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~ 240 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVCA 240 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEECC
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEec
Confidence 45567888888876 456666777777889999997 6666767653322222 12232221 1 1 356555432
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
.. ...+....+.+++ +|+++++-.
T Consensus 241 -----~~---~~~~~~~~~~l~~---~G~~v~~g~ 264 (348)
T 4eez_A 241 -----VA---RIAFEQAVASLKP---MGKMVAVAV 264 (348)
T ss_dssp -----SC---HHHHHHHHHTEEE---EEEEEECCC
T ss_pred -----cC---cchhheeheeecC---CceEEEEec
Confidence 11 2457788889999 899887653
No 426
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=77.23 E-value=0.28 Score=37.28 Aligned_cols=64 Identities=13% Similarity=0.006 Sum_probs=45.5
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCC-----CCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNND-----EEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~-----~~~~y~~t~~~~~l~ 70 (259)
.++.|+..|...++++|..|||+.+++++..+.++++.|..-+++.... ..-.+.+|+.++.+.
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence 3455677776533689999999999999999999988877665542111 123578899887554
No 427
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=77.19 E-value=0.18 Score=37.12 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=45.1
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCc---eeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQ---GYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~---~y~~t~~~~~l~ 70 (259)
.++.++..|... ++ |..+||+.+++++..+.+.++.+..-+++... ..+. .+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~~~-~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEE-PR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHS-CE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHH
Confidence 355677788774 45 99999999999999999999887766554211 1122 488999987543
No 428
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=76.87 E-value=0.47 Score=35.36 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=36.5
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
.+..|+..|..+ ++.|..|||+++|+++..+.+.++.|...+++
T Consensus 4 ~~~~il~~L~~~-~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i 47 (150)
T 2pn6_A 4 IDLRILKILQYN-AKYSLDEIAREIRIPKATLSYRIKKLEKDGVI 47 (150)
T ss_dssp HHHHHHHHHTTC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcE
Confidence 456788888864 78999999999999999999988877665554
No 429
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=76.63 E-value=1.7 Score=40.82 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=58.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHC-------CC-----CeEEEeec-h---HHHhhcc-----------c-----------
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAF-------PK-----LECTCFDL-P---HVVNGLE-----------S----------- 155 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~~~~a~-----------~----------- 155 (259)
+.-+|+|+|-|+|.....+.+.+ |+ ++++.++. | +.+..+- +
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 34689999999999998886643 33 56888886 3 2222210 0
Q ss_pred ------CCC--CeEEEeCCCCC--C-C-----CCccEEeehhh-----hccCChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250 156 ------DLV--NLKYVGGDMFK--A-I-----SPAYAVLLKWI-----LLDWNDEECVKILKKCKEAITRDGKKRKVI 212 (259)
Q Consensus 156 ------~~~--ri~~~~~d~~~--~-~-----~~~D~~~~~~v-----lh~~~d~~~~~il~~~~~~L~p~~~gg~ll 212 (259)
... ++++..||..+ + + ..+|++++--. -..|+ ..+++.+++.++| |+++.
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~----~~~~~~l~~~~~~---g~~~~ 208 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWN----EQLFNAMARMTRP---GGTFS 208 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCS----HHHHHHHHHHEEE---EEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhh----HHHHHHHHHHhCC---CCEEE
Confidence 012 55677888876 2 2 24898887421 12243 3578888899998 67654
No 430
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=76.44 E-value=13 Score=28.30 Aligned_cols=93 Identities=15% Similarity=0.017 Sum_probs=56.7
Q ss_pred cCCCCeEEEec--CCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeC--CCCCC----C--CCccEEeeh
Q 041250 112 FEGLNSLVDVG--GGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGG--DMFKA----I--SPAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--d~~~~----~--~~~D~~~~~ 180 (259)
+....+||.+| ||.|..+..+++.. +.++++.|. ++..+.+++......+-.. ++.+. . .++|+++..
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~ 114 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNS 114 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEEC
Confidence 56678999999 46677777777765 468899987 5555555542222111111 11110 1 147877743
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
- .. ..++.+.+.|+| +|+++++-..
T Consensus 115 ~-----g~----~~~~~~~~~l~~---~G~~v~~g~~ 139 (198)
T 1pqw_A 115 L-----AG----EAIQRGVQILAP---GGRFIELGKK 139 (198)
T ss_dssp C-----CT----HHHHHHHHTEEE---EEEEEECSCG
T ss_pred C-----ch----HHHHHHHHHhcc---CCEEEEEcCC
Confidence 2 22 357788899999 8998877653
No 431
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=76.26 E-value=0.28 Score=36.81 Aligned_cols=61 Identities=13% Similarity=0.018 Sum_probs=44.3
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--C---CCceeecCHhhhhhh
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--D---EEQGYVLTNASKLLL 70 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~---~~~~y~~t~~~~~l~ 70 (259)
+.++..|... +++|..|||+.+++++..+.++++.|..-+++... . ..-.+.+|+.++.+.
T Consensus 53 ~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE-DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS-CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence 4456667654 78999999999999999999998887766554211 1 123578999887554
No 432
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=75.93 E-value=27 Score=27.44 Aligned_cols=87 Identities=14% Similarity=0.073 Sum_probs=53.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCe-EEEeec-hHHHhhcccCCCCeEEEeCCCCCC-------CCCccEEeehhhhc
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-------ISPAYAVLLKWILL 184 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~~~~~~vlh 184 (259)
...+++=+|+ |..+..+++..-... ++++|. ++.++.++ ..+.++.+|..++ ..++|++++.
T Consensus 8 ~~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~---~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~---- 78 (234)
T 2aef_A 8 KSRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR---SGANFVHGDPTRVSDLEKANVRGARAVIVD---- 78 (234)
T ss_dssp --CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH---TTCEEEESCTTCHHHHHHTTCTTCSEEEEC----
T ss_pred CCCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh---cCCeEEEcCCCCHHHHHhcCcchhcEEEEc----
Confidence 3457888887 577788777653321 788887 56555544 4588999998762 2358887765
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
.++++.-.......+.+.| ..+++.
T Consensus 79 -~~~d~~n~~~~~~a~~~~~---~~~iia 103 (234)
T 2aef_A 79 -LESDSETIHCILGIRKIDE---SVRIIA 103 (234)
T ss_dssp -CSCHHHHHHHHHHHHHHCS---SSEEEE
T ss_pred -CCCcHHHHHHHHHHHHHCC---CCeEEE
Confidence 2333333344445566777 445544
No 433
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=75.84 E-value=21 Score=26.11 Aligned_cols=84 Identities=18% Similarity=0.088 Sum_probs=47.3
Q ss_pred CCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC-------CCCccEEeehhhhc
Q 041250 114 GLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-------ISPAYAVLLKWILL 184 (259)
Q Consensus 114 ~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~~~~~~vlh 184 (259)
...+|+=+|+|. |......+.+. +.+++++|. ++.++.+++ ...+.++.+|..++ ..++|+++..-
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~-~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~--- 92 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNS-EFSGFTVVGDAAEFETLKECGMEKADMVFAFT--- 92 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCT-TCCSEEEESCTTSHHHHHTTTGGGCSEEEECS---
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHh-cCCCcEEEecCCCHHHHHHcCcccCCEEEEEe---
Confidence 356899998765 44333444443 458999998 565555541 22455666776441 22578877662
Q ss_pred cCChHHHHHHHHHHHHhccc
Q 041250 185 DWNDEECVKILKKCKEAITR 204 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p 204 (259)
++......+..+.+.+.|
T Consensus 93 --~~~~~~~~~~~~~~~~~~ 110 (155)
T 2g1u_A 93 --NDDSTNFFISMNARYMFN 110 (155)
T ss_dssp --SCHHHHHHHHHHHHHTSC
T ss_pred --CCcHHHHHHHHHHHHHCC
Confidence 333333444445555555
No 434
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=75.82 E-value=0.38 Score=35.69 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=45.6
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--C--CCC---ceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--N--DEE---QGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~--~~~---~~y~~t~~~~~l~ 70 (259)
.++.++..|... ++.|..+||+.+++++..+.++++.|..-+++.. . ..+ -.+.+|+.++.+.
T Consensus 42 ~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 42 QQLAMINVIYST-PGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHHS-TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 345567777764 7899999999999999999998887766554422 1 122 2588999987543
No 435
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=75.79 E-value=0.26 Score=37.07 Aligned_cols=62 Identities=18% Similarity=0.125 Sum_probs=45.9
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~ 70 (259)
++.++..|... ++.|..|||+.+++++..+.++++.|..-+++..+ ...-.+.+|+.++.+.
T Consensus 55 q~~vL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 55 KLRLLSSLSAY-GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHH
Confidence 45567777654 68999999999999999999998887766554211 1223588999988553
No 436
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=75.28 E-value=0.28 Score=37.28 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=45.6
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--C---CCCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--N---DEEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~---~~~~~y~~t~~~~~l~ 70 (259)
.++.|+..|... ++.|..|||+.+++++..+.++++.|...+++.. . ...-.+.+|+.++.+.
T Consensus 46 ~~~~iL~~L~~~-~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 46 PQFRTLVILSNH-GPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHHH-CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 345567777654 6899999999999999999998888776655421 1 1223478999887543
No 437
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=75.18 E-value=0.19 Score=35.51 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=33.1
Q ss_pred cCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 9 LGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 9 l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
+.|+..+...|.+.|..+||+.+|++...+++.|..|...+++
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV 63 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFV 63 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 4466666332348999999999999999999988887766654
No 438
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=75.00 E-value=0.31 Score=33.69 Aligned_cols=44 Identities=9% Similarity=0.001 Sum_probs=35.4
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
.+..|+..|... ++.|..|||+.+|+++..+.+.+..+...+++
T Consensus 21 ~~~~il~~l~~~-~~~s~~ela~~l~is~~tv~~~l~~L~~~glv 64 (109)
T 1sfx_A 21 SDVRIYSLLLER-GGMRVSEIARELDLSARFVRDRLKVLLKRGFV 64 (109)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 355677777653 78999999999999999999988887665544
No 439
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=74.71 E-value=5.9 Score=33.54 Aligned_cols=92 Identities=10% Similarity=0.012 Sum_probs=58.8
Q ss_pred CCCeEEEecCCc-hHHHHHHHHHC-CCCeEEEeec-hHHHhhccc-CCCCeE-EEe-CCCCCC--CC-CccEEeehhhhc
Q 041250 114 GLNSLVDVGGGT-GTAAKAIAKAF-PKLECTCFDL-PHVVNGLES-DLVNLK-YVG-GDMFKA--IS-PAYAVLLKWILL 184 (259)
Q Consensus 114 ~~~~vlDvGgG~-G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-~~~ri~-~~~-~d~~~~--~~-~~D~~~~~~vlh 184 (259)
...+||-+|+|. |.++..+++.. |+.++++.|. ++-.+.+++ ..+.+- ... .|+.+. .. ++|+++-.-
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~--- 246 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLV--- 246 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESS---
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECC---
Confidence 568899999765 88888888864 5789999996 666666665 222221 001 111111 12 588877542
Q ss_pred cCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 185 DWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 185 ~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
..+ ..++.+.+.|+| +|+++++-.
T Consensus 247 --g~~---~~~~~~~~~l~~---~G~iv~~g~ 270 (344)
T 2h6e_A 247 --GTE---ETTYNLGKLLAQ---EGAIILVGM 270 (344)
T ss_dssp --CCH---HHHHHHHHHEEE---EEEEEECCC
T ss_pred --CCh---HHHHHHHHHhhc---CCEEEEeCC
Confidence 111 357788889999 899887654
No 440
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=74.07 E-value=13 Score=29.08 Aligned_cols=86 Identities=14% Similarity=0.175 Sum_probs=51.9
Q ss_pred eEEEecCCchHHHHHHHHHC--CCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC-------CCCccEEeehhhhccC
Q 041250 117 SLVDVGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-------ISPAYAVLLKWILLDW 186 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~~~~~~vlh~~ 186 (259)
+|+=+|+ |.++..+++.. .+..++++|. ++.++...+ ...+.++.+|..++ ..++|++++. .
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~-~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~-----~ 73 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAK-KLKATIIHGDGSHKEILRDAEVSKNDVVVIL-----T 73 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-HSSSEEEESCTTSHHHHHHHTCCTTCEEEEC-----C
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH-HcCCeEEEcCCCCHHHHHhcCcccCCEEEEe-----c
Confidence 3555665 67777766642 3568999998 666655332 12577899998872 2358888765 3
Q ss_pred ChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 187 NDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 187 ~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
+++....++....+.+.| ..+++.
T Consensus 74 ~~d~~n~~~~~~a~~~~~---~~~iia 97 (218)
T 3l4b_C 74 PRDEVNLFIAQLVMKDFG---VKRVVS 97 (218)
T ss_dssp SCHHHHHHHHHHHHHTSC---CCEEEE
T ss_pred CCcHHHHHHHHHHHHHcC---CCeEEE
Confidence 334334455555555555 455443
No 441
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=73.83 E-value=24 Score=30.04 Aligned_cols=93 Identities=12% Similarity=0.034 Sum_probs=58.5
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccC-CCCeEEEeC----CCCCC-----CCCccEEee
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESD-LVNLKYVGG----DMFKA-----ISPAYAVLL 179 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~----d~~~~-----~~~~D~~~~ 179 (259)
+....+||-+|+|. |.++..+++...--++++.|. ++-.+.+++. .+.+ +-.. |+.+. ..++|+++-
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~~~~~~~~~g~D~vid 268 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDF-VNPNDHSEPISQVLSKMTNGGVDFSLE 268 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEE-ECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceE-EeccccchhHHHHHHHHhCCCCCEEEE
Confidence 55667888898765 888889998874337999986 6666666652 2222 1111 11110 114787764
Q ss_pred hhhhccCChHHHHHHHHHHHHhcccCCCC-cEEEEEee
Q 041250 180 KWILLDWNDEECVKILKKCKEAITRDGKK-RKVIIKDM 216 (259)
Q Consensus 180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~g-g~lli~e~ 216 (259)
.- ... ..++.+.+.|++ + |+++++-.
T Consensus 269 ~~-----g~~---~~~~~~~~~l~~---~~G~iv~~G~ 295 (374)
T 1cdo_A 269 CV-----GNV---GVMRNALESCLK---GWGVSVLVGW 295 (374)
T ss_dssp CS-----CCH---HHHHHHHHTBCT---TTCEEEECSC
T ss_pred CC-----CCH---HHHHHHHHHhhc---CCcEEEEEcC
Confidence 32 111 357888899999 9 99887754
No 442
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=73.79 E-value=0.48 Score=35.13 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=34.9
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS 50 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~ 50 (259)
.+..|++.|..+ ++.|..|||+++|+++..+.+.++.|...++
T Consensus 6 ~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~ 48 (144)
T 2cfx_A 6 IDLNIIEELKKD-SRLSMRELGRKIKLSPPSVTERVRQLESFGI 48 (144)
T ss_dssp HHHHHHHHHHHC-SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 355678888875 7899999999999999999998877755443
No 443
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=73.79 E-value=0.57 Score=35.02 Aligned_cols=63 Identities=14% Similarity=0.037 Sum_probs=44.6
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--CCCC---ceeecCHhhhhhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--NDEE---QGYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~~~~---~~y~~t~~~~~l~ 70 (259)
++.++..|...+++.+..|||+.+++++..+.++++.+..-+++.. ...+ -...+|+.++.+.
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence 3445666654445688899999999999999999988776655421 1222 3578899988554
No 444
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=73.78 E-value=0.24 Score=36.09 Aligned_cols=63 Identities=13% Similarity=0.024 Sum_probs=45.1
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCC---ceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEE---QGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~---~~y~~t~~~~~l~ 70 (259)
.++.++..|... ++.|..+||+.+++++..+.+.++.+..-+++... ..+ -.+.+|+.++.+.
T Consensus 37 ~~~~iL~~l~~~-~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 37 QQWRVIRILRQQ-GEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHH-CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 345567777664 68999999999999999999988887665544211 112 2378898887543
No 445
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=73.66 E-value=0.64 Score=35.29 Aligned_cols=43 Identities=7% Similarity=0.105 Sum_probs=34.8
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS 50 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~ 50 (259)
.+..|.+.|..+ +++|..+||+++|+++..+.+-++.|..-++
T Consensus 4 ~d~~il~~L~~~-~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 4 LDRKILRILQED-STLAVADLAKKVGLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHTTC-SCSCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 456788899875 8999999999999999999887776654443
No 446
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=73.41 E-value=0.34 Score=35.64 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=45.5
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhhc
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLLK 71 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~~ 71 (259)
++.++..|... ++.|..+||+.+++++..+.+.++.+..-+++... ...-.+.+|+.++.+..
T Consensus 42 ~~~iL~~l~~~-~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 42 QYLALLLLWEH-ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 45566677653 68999999999999999999988887665544221 12234889999885543
No 447
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=73.40 E-value=0.5 Score=35.27 Aligned_cols=43 Identities=14% Similarity=0.076 Sum_probs=34.7
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS 50 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~ 50 (259)
.+..|+..|..+ ++.|..|||+++|+++..+.+.++.|...++
T Consensus 8 ~~~~iL~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~ 50 (150)
T 2w25_A 8 IDRILVRELAAD-GRATLSELATRAGLSVSAVQSRVRRLESRGV 50 (150)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 456678888865 7899999999999999999987776655443
No 448
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=73.37 E-value=17 Score=30.35 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=62.4
Q ss_pred eEEEecCCchHHHHHHHHHCCCCe-EEEeec-hHHHhhcccCCCCeEEEeCCCCC----CCCCccEEeehhhhccCC---
Q 041250 117 SLVDVGGGTGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLESDLVNLKYVGGDMFK----AISPAYAVLLKWILLDWN--- 187 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~----~~~~~D~~~~~~vlh~~~--- 187 (259)
+|||+=||.|.+...+.++ +.+ +..+|+ +.+++..+...+ -.++.+|+.+ .+|..|+++...-+..|+
T Consensus 2 kvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~~-~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag 78 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHS-AKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGG 78 (331)
T ss_dssp EEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHCC-SEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETT
T ss_pred eEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCC-CCcccCChhhCCHhhCCcccEEEecCCCCCcCCCC
Confidence 6899999999999999887 466 457787 666655554222 2567788876 356789988876555442
Q ss_pred ------hHHHHHHHHH---HHHhcccCCCCcEEEEEeeeec
Q 041250 188 ------DEECVKILKK---CKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 188 ------d~~~~~il~~---~~~~L~p~~~gg~lli~e~~~~ 219 (259)
|+ .-.++.+ +.+.++| +++++|.|..
T Consensus 79 ~~~g~~d~-R~~L~~~~~r~i~~~~P-----k~~~~ENV~g 113 (331)
T 3ubt_Y 79 SLRGIDDP-RGKLFYEYIRILKQKKP-----IFFLAENVKG 113 (331)
T ss_dssp EECCTTCG-GGHHHHHHHHHHHHHCC-----SEEEEEECCG
T ss_pred CccCCCCc-hhHHHHHHHHHHhccCC-----eEEEeeeecc
Confidence 32 2234443 4445666 5889998854
No 449
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=73.08 E-value=0.55 Score=35.08 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=35.8
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
.+..|.+.|..+ ++.|..|||+++|+++..+.+.++.|...+++
T Consensus 8 ~~~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 8 IDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 455688888875 79999999999999999999988777655543
No 450
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=72.96 E-value=0.76 Score=36.67 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhh
Q 041250 19 GKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLL 70 (259)
Q Consensus 19 ~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~ 70 (259)
+++++..+||+.+++++..+.+.++.|..-+++. ......+.+|+.++.+.
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~-r~~~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLI-KDKKAGYLLTDLGLKLV 68 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EETTTEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEE-EecCCCeEECHHHHHHH
Confidence 3789999999999999999999998887766542 22336799999887443
No 451
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=72.23 E-value=43 Score=28.20 Aligned_cols=93 Identities=14% Similarity=-0.040 Sum_probs=59.7
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCe-EEEeec-hHHHhhcccCCCCeEEEeC------CCCCC-----CC-CccE
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLE-CTCFDL-PHVVNGLESDLVNLKYVGG------DMFKA-----IS-PAYA 176 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~------d~~~~-----~~-~~D~ 176 (259)
+....+||=+|+|. |.++..+++.. +.+ +++.|. ++-.+.+++..+.+..... |+.+. .+ ++|+
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dv 255 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAV 255 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCE
Confidence 55667787788766 88999999887 454 888886 6666666654333322221 11110 12 4888
Q ss_pred EeehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 177 VLLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 177 ~~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
++-. ...+ ..++.+.+.|++ +|+++++-.
T Consensus 256 vid~-----~g~~---~~~~~~~~~l~~---~G~iv~~G~ 284 (363)
T 3m6i_A 256 ALEC-----TGVE---SSIAAAIWAVKF---GGKVFVIGV 284 (363)
T ss_dssp EEEC-----SCCH---HHHHHHHHHSCT---TCEEEECCC
T ss_pred EEEC-----CCCh---HHHHHHHHHhcC---CCEEEEEcc
Confidence 7754 2222 357778889999 999988765
No 452
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*
Probab=72.08 E-value=21 Score=30.34 Aligned_cols=93 Identities=15% Similarity=0.058 Sum_probs=60.7
Q ss_pred cCCCCeEEEec--CCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEe--CCCCCC----CC-CccEEeehh
Q 041250 112 FEGLNSLVDVG--GGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVG--GDMFKA----IS-PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~--~d~~~~----~~-~~D~~~~~~ 181 (259)
++...+||-+| ||.|..+..+++.. +.++++.|. ++-.+.+++......+-. .|+.+. .+ ++|+++-.-
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~ 239 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESV 239 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECC
Confidence 56678999999 78899999999987 568999997 566666665222211111 111110 12 478876542
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
.. ..++.+.+.|++ +|+++++-..
T Consensus 240 -----g~----~~~~~~~~~l~~---~G~iv~~g~~ 263 (362)
T 2c0c_A 240 -----GG----AMFDLAVDALAT---KGRLIVIGFI 263 (362)
T ss_dssp -----CT----HHHHHHHHHEEE---EEEEEECCCG
T ss_pred -----CH----HHHHHHHHHHhc---CCEEEEEeCC
Confidence 11 357788899999 8998887654
No 453
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=71.95 E-value=19 Score=30.66 Aligned_cols=94 Identities=7% Similarity=-0.106 Sum_probs=58.1
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeC----CCCC---C--CCCccEEeeh
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGG----DMFK---A--ISPAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~----d~~~---~--~~~~D~~~~~ 180 (259)
+....+||-+|+|. |.++..+++....-++++.|. ++-.+.+++......+-.. |+.+ . ..++|+++-.
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~ 268 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 268 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEEC
Confidence 55667888898765 888888988874337899986 6666666652221111111 1111 0 1147877644
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCC-cEEEEEee
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKK-RKVIIKDM 216 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~g-g~lli~e~ 216 (259)
- ... ..++.+.+.+++ + |+++++-.
T Consensus 269 ~-----g~~---~~~~~~~~~l~~---~~G~iv~~G~ 294 (374)
T 2jhf_A 269 I-----GRL---DTMVTALSCCQE---AYGVSVIVGV 294 (374)
T ss_dssp S-----CCH---HHHHHHHHHBCT---TTCEEEECSC
T ss_pred C-----CCH---HHHHHHHHHhhc---CCcEEEEecc
Confidence 2 211 357788889999 8 99887654
No 454
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=71.69 E-value=0.66 Score=34.64 Aligned_cols=54 Identities=11% Similarity=0.080 Sum_probs=40.7
Q ss_pred hhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250 14 IINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL 69 (259)
Q Consensus 14 ~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l 69 (259)
.|... ++.|..+||+.+|+++..+++.++.+...+++. ...+..+.+|+.+..+
T Consensus 48 ~l~~~-~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~-r~~~~~~~lT~~g~~~ 101 (155)
T 2h09_A 48 LIREV-GEARQVDMAARLGVSQPTVAKMLKRLATMGLIE-MIPWRGVFLTAEGEKL 101 (155)
T ss_dssp HHHHH-SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEE-EETTTEEEECHHHHHH
T ss_pred HHHhC-CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEE-EecCCceEEChhHHHH
Confidence 55542 689999999999999999999888876655541 2234568899888754
No 455
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=71.67 E-value=17 Score=31.94 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=54.6
Q ss_pred CCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC-------CCCccEEeehhhhcc
Q 041250 115 LNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-------ISPAYAVLLKWILLD 185 (259)
Q Consensus 115 ~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~~~~~~vlh~ 185 (259)
..+|+=+|+|. |......+.+ .+..++++|. ++.++.+++ ..+.++.||..++ ...+|++++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~-~g~~vvvId~d~~~v~~~~~--~g~~vi~GDat~~~~L~~agi~~A~~viv~----- 75 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLS-SGVKMVVLDHDPDHIETLRK--FGMKVFYGDATRMDLLESAGAAKAEVLINA----- 75 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH-TTCCEEEEECCHHHHHHHHH--TTCCCEESCTTCHHHHHHTTTTTCSEEEEC-----
T ss_pred CCeEEEECCCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHh--CCCeEEEcCCCCHHHHHhcCCCccCEEEEC-----
Confidence 35688888754 3333333333 3578999998 888877763 3466788998873 2258887765
Q ss_pred CChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 186 WNDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
.++++.-..+....+.+.| ..++++-
T Consensus 76 ~~~~~~n~~i~~~ar~~~p---~~~Iiar 101 (413)
T 3l9w_A 76 IDDPQTNLQLTEMVKEHFP---HLQIIAR 101 (413)
T ss_dssp CSSHHHHHHHHHHHHHHCT---TCEEEEE
T ss_pred CCChHHHHHHHHHHHHhCC---CCeEEEE
Confidence 2333333444445556677 5566553
No 456
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=71.56 E-value=30 Score=29.46 Aligned_cols=94 Identities=10% Similarity=-0.092 Sum_probs=58.4
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeC----CCCCC-----CCCccEEeeh
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGG----DMFKA-----ISPAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~----d~~~~-----~~~~D~~~~~ 180 (259)
+....+||-+|+|. |.++..+++...-.++++.|. ++-.+.+++......+-.. |+.+. ..++|+++-.
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~ 272 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 272 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEEC
Confidence 55667888898764 888889998874337999986 6666666652221111111 11110 1157887643
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCC-cEEEEEee
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKK-RKVIIKDM 216 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~g-g~lli~e~ 216 (259)
- .. ...++.+.+.+++ + |+++++-.
T Consensus 273 ~-----G~---~~~~~~~~~~l~~---~~G~iv~~G~ 298 (376)
T 1e3i_A 273 A-----GT---AQTLKAAVDCTVL---GWGSCTVVGA 298 (376)
T ss_dssp S-----CC---HHHHHHHHHTBCT---TTCEEEECCC
T ss_pred C-----CC---HHHHHHHHHHhhc---CCCEEEEECC
Confidence 2 11 1357788899999 9 99887754
No 457
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=71.31 E-value=2.9 Score=35.06 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=28.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCC----CeEEEeec
Q 041250 114 GLNSLVDVGGGTGTAAKAIAKAFPK----LECTCFDL 146 (259)
Q Consensus 114 ~~~~vlDvGgG~G~~~~~l~~~~p~----~~~~~~D~ 146 (259)
+...|+=||||.|.....|.+.+|+ ++.+++|-
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDP 96 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDG 96 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcC
Confidence 3569999999999999999998876 57888884
No 458
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=71.24 E-value=0.6 Score=35.34 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=35.0
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS 50 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~ 50 (259)
.+..|.+.|..+ ++.|..|||+++|+++..+.+.++.|...++
T Consensus 11 ~~~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~ 53 (162)
T 2p5v_A 11 TDIKILQVLQEN-GRLTNVELSERVALSPSPCLRRLKQLEDAGI 53 (162)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 355678888875 7899999999999999999998877765443
No 459
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=71.21 E-value=7.6 Score=36.29 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=57.6
Q ss_pred CCeEEEecCCchHHHHHHHHHC-------CC-----CeEEEeec----hHHHhhcc-----------c------------
Q 041250 115 LNSLVDVGGGTGTAAKAIAKAF-------PK-----LECTCFDL----PHVVNGLE-----------S------------ 155 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~~~-------p~-----~~~~~~D~----~~~~~~a~-----------~------------ 155 (259)
.-+|+|+|-|+|.......+.+ |+ ++++.++. ++.+..+- +
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 4589999999999988876643 32 46888885 33333110 0
Q ss_pred -----C--CCCeEEEeCCCCC---CC-----CCccEEeehhh-----hccCChHHHHHHHHHHHHhcccCCCCcEEE
Q 041250 156 -----D--LVNLKYVGGDMFK---AI-----SPAYAVLLKWI-----LLDWNDEECVKILKKCKEAITRDGKKRKVI 212 (259)
Q Consensus 156 -----~--~~ri~~~~~d~~~---~~-----~~~D~~~~~~v-----lh~~~d~~~~~il~~~~~~L~p~~~gg~ll 212 (259)
. .-++++..+|..+ .+ ..+|++++--. -..|+. .+++.+++.++| ||.+.
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~----~~~~~l~~~~~~---g~~~~ 216 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQ----NLFNAMARLARP---GGTLA 216 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCH----HHHHHHHHHEEE---EEEEE
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhH----HHHHHHHHHhCC---CCEEE
Confidence 0 1234456677765 12 24898887431 123544 589999999999 77654
No 460
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=70.98 E-value=14 Score=30.91 Aligned_cols=93 Identities=12% Similarity=0.018 Sum_probs=57.6
Q ss_pred cCCCCeEEEecC--CchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCC---CCCC-----CCCccEEeeh
Q 041250 112 FEGLNSLVDVGG--GTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGD---MFKA-----ISPAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d---~~~~-----~~~~D~~~~~ 180 (259)
.....+||-.|| |.|..+..+++.. +.++++.|. ++..+.+++......+-..+ +.+. ..++|+++-.
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~ 221 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDN 221 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEEC
Confidence 556788999996 7788888888775 458999997 56666564432222221111 1000 1247876644
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
- .. ..++...+.|++ +|+++++-..
T Consensus 222 ~-----g~----~~~~~~~~~l~~---~G~~v~~g~~ 246 (333)
T 1v3u_A 222 V-----GG----EFLNTVLSQMKD---FGKIAICGAI 246 (333)
T ss_dssp S-----CH----HHHHHHHTTEEE---EEEEEECCCC
T ss_pred C-----Ch----HHHHHHHHHHhc---CCEEEEEecc
Confidence 2 22 247788899999 8999877643
No 461
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=70.96 E-value=4.7 Score=34.09 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=34.4
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhccc
Q 041250 113 EGLNSLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLES 155 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 155 (259)
.....|||-=||+|..+.+..+. +.+++++|+ |..++.+++
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~ 292 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAF 292 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHG
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHH
Confidence 34678999999999999998887 578999999 777777664
No 462
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=70.69 E-value=0.6 Score=34.84 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=35.0
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS 50 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~ 50 (259)
.+..|+..|..+ ++.|..|||+++|+++..+.+.++.|...++
T Consensus 10 ~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 10 VDMQLVKILSEN-SRLTYRELADILNTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 456788888875 7899999999999999999987777655443
No 463
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=70.58 E-value=0.35 Score=35.87 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=44.5
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC-----CCCceeecCHhhhhhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-----DEEQGYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-----~~~~~y~~t~~~~~l~ 70 (259)
++.|+..|... ++.|..+||+.+++++..+.+.++.|...+++... ...-.+.+|+.++.+.
T Consensus 39 ~~~iL~~l~~~-~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKH-GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 44566777653 68999999999999999999988887665544211 1122578899887543
No 464
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=70.53 E-value=0.75 Score=35.36 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=35.9
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
.+..|...|..+ +..|..|||+++|+++..+.+-++.|...+++
T Consensus 28 ~d~~IL~~L~~~-~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 28 IDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 456788888875 78999999999999999999877777655543
No 465
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=69.94 E-value=14 Score=33.00 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=55.8
Q ss_pred CCCCeEEEecCCchHHHH--HHHHHCCCCeEEEeec-hHHHhhcccCC------------------CCeEEEeCCCCCCC
Q 041250 113 EGLNSLVDVGGGTGTAAK--AIAKAFPKLECTCFDL-PHVVNGLESDL------------------VNLKYVGGDMFKAI 171 (259)
Q Consensus 113 ~~~~~vlDvGgG~G~~~~--~l~~~~p~~~~~~~D~-~~~~~~a~~~~------------------~ri~~~~~d~~~~~ 171 (259)
.+..+|.=||+|.=.... .|++. +.+++++|. ++.++..++.. .++++. .|..+..
T Consensus 6 ~~~~~I~VIG~G~vG~~lA~~la~~--G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~t-td~~~a~ 82 (478)
T 2y0c_A 6 HGSMNLTIIGSGSVGLVTGACLADI--GHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFS-TDIEAAV 82 (478)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-CCHHHHH
T ss_pred CCCceEEEECcCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEE-CCHHHHh
Confidence 456789999998643333 33433 457999998 66666655411 123221 1111112
Q ss_pred CCccEEeehhhh----ccC-ChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 172 SPAYAVLLKWIL----LDW-NDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 172 ~~~D~~~~~~vl----h~~-~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
..+|+|++.--- +.- +-.....+++.+.+.++| |.++|.....
T Consensus 83 ~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~----~~iVV~~STv 130 (478)
T 2y0c_A 83 AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTG----FKVIVDKSTV 130 (478)
T ss_dssp HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCS----CEEEEECSCC
T ss_pred hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCC----CCEEEEeCCc
Confidence 247888876211 001 115567888999999998 6666665443
No 466
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=69.73 E-value=0.62 Score=34.80 Aligned_cols=43 Identities=12% Similarity=0.148 Sum_probs=34.8
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS 50 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~ 50 (259)
.+..|+..|..+ ++.|..|||+++|+++..+.+.++.|...++
T Consensus 9 ~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~ 51 (152)
T 2cg4_A 9 LDRGILEALMGN-ARTAYAELAKQFGVSPETIHVRVEKMKQAGI 51 (152)
T ss_dssp HHHHHHHHHHHC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 355688888875 7999999999999999999987777655443
No 467
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=69.70 E-value=0.95 Score=32.62 Aligned_cols=62 Identities=6% Similarity=0.066 Sum_probs=44.1
Q ss_pred HcCcchhhhcC-CCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CC---CceeecCHhhhhh
Q 041250 8 QLGIPDIINKH-GKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DE---EQGYVLTNASKLL 69 (259)
Q Consensus 8 ~l~lf~~L~~~-~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~---~~~y~~t~~~~~l 69 (259)
++.++..|... +++.|..|||+.+++++..+.++++.|..-+++... .. .-.+.+|+.++.+
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~ 106 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKK 106 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHH
Confidence 34455566542 267999999999999999999999888776665321 12 2347888888744
No 468
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=69.54 E-value=1.1 Score=33.19 Aligned_cols=62 Identities=13% Similarity=0.129 Sum_probs=38.0
Q ss_pred cCcchhhhcC----CCCCCHHHHHHHcCCCccccccceeccccccCCCCC-CCC---ceeecCHhhhhhh
Q 041250 9 LGIPDIINKH----GKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN-DEE---QGYVLTNASKLLL 70 (259)
Q Consensus 9 l~lf~~L~~~----~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~-~~~---~~y~~t~~~~~l~ 70 (259)
+.++..|... ++++|..|||+.+++++..+.++++.+..-+++... ..+ -...+|+.++.+.
T Consensus 36 ~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 36 FSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAAL 105 (148)
T ss_dssp HHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHH
Confidence 3345555432 146899999999999999999999887665654221 122 2467888887443
No 469
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=69.37 E-value=4.7 Score=33.60 Aligned_cols=55 Identities=9% Similarity=0.076 Sum_probs=36.7
Q ss_pred CCCeEEEeCCCCC---CCC--CccEEeehhhhccCCh------------------HHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 157 LVNLKYVGGDMFK---AIS--PAYAVLLKWILLDWND------------------EECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 157 ~~ri~~~~~d~~~---~~~--~~D~~~~~~vlh~~~d------------------~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
..+++++.+|.++ .++ .+|+|+..--.+...+ +....+++++.++|+| ||.+++
T Consensus 19 ~~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~---~G~l~i 95 (297)
T 2zig_A 19 FGVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVP---GGRLVI 95 (297)
T ss_dssp --CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred ccCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCC---CcEEEE
Confidence 4578899999887 234 4999988754432110 1124678899999999 888766
Q ss_pred E
Q 041250 214 K 214 (259)
Q Consensus 214 ~ 214 (259)
.
T Consensus 96 ~ 96 (297)
T 2zig_A 96 V 96 (297)
T ss_dssp E
T ss_pred E
Confidence 5
No 470
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=69.26 E-value=18 Score=30.85 Aligned_cols=94 Identities=6% Similarity=-0.109 Sum_probs=58.4
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeC----CCCCC-----CCCccEEeeh
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGG----DMFKA-----ISPAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~----d~~~~-----~~~~D~~~~~ 180 (259)
+....+||-+|+|. |.++..+++....-++++.|. ++-.+.+++......+-.. |+.+. ..++|+++-.
T Consensus 189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~ 268 (373)
T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 268 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 55667888898765 888888888763337899986 6666666653221111111 11110 1158887744
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCC-cEEEEEee
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKK-RKVIIKDM 216 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~g-g~lli~e~ 216 (259)
- .. ...++.+.+.|++ + |+++++-.
T Consensus 269 ~-----g~---~~~~~~~~~~l~~---~~G~iv~~G~ 294 (373)
T 1p0f_A 269 A-----GR---IETMMNALQSTYC---GSGVTVVLGL 294 (373)
T ss_dssp S-----CC---HHHHHHHHHTBCT---TTCEEEECCC
T ss_pred C-----CC---HHHHHHHHHHHhc---CCCEEEEEcc
Confidence 2 11 1357788899999 8 99887654
No 471
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=69.06 E-value=0.78 Score=36.03 Aligned_cols=46 Identities=15% Similarity=0.066 Sum_probs=37.1
Q ss_pred HHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 4 KCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 4 ~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
....+..|+..|.+ ++.|..|||+.+|+++..+.+-++.|...+++
T Consensus 18 ~d~~~~~IL~~L~~--~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI 63 (192)
T 1uly_A 18 LEDTRRKILKLLRN--KEMTISQLSEILGKTPQTIYHHIEKLKEAGLV 63 (192)
T ss_dssp HSHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred CCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 34566788999984 79999999999999999999977776655443
No 472
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=69.05 E-value=0.69 Score=35.92 Aligned_cols=64 Identities=13% Similarity=0.018 Sum_probs=45.7
Q ss_pred HHcCcchhhhcC-CCCCCHHHHHHHcCCCccccccceeccccccCCCC--C---CCCceeecCHhhhhhh
Q 041250 7 FQLGIPDIINKH-GKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--N---DEEQGYVLTNASKLLL 70 (259)
Q Consensus 7 ~~l~lf~~L~~~-~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~---~~~~~y~~t~~~~~l~ 70 (259)
.++.++..|... ++++|..+||+.+++++..+.++++.|..-+++.. . ...-.+.+|+.++.+.
T Consensus 42 ~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 111 (189)
T 3nqo_A 42 RQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVM 111 (189)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 455566677641 26899999999999999999999988776655421 1 1223578999887544
No 473
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=68.92 E-value=1 Score=38.75 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=0.0
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCCCCCceeecCHhhhhhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l~ 70 (259)
+..|+..|... +++|..|||+.+|+++..++|.++.+..-+++ +.......+|+.++.+.
T Consensus 22 ~~~iL~~l~~~-~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv--~~~~~gi~LT~~G~~~~ 81 (345)
T 2o0m_A 22 RFQILRNIYWM-QPIGRRSLSETMGITERVLRTETDVLKQLNLI--EPSKSGMTLTERGLEVY 81 (345)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE--EEEecceEEcHHHHHHH
Confidence 35677777764 79999999999999999999999988776654 32233467777776444
No 474
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=68.89 E-value=0.72 Score=35.41 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=35.0
Q ss_pred HHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccC
Q 041250 7 FQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSS 50 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~ 50 (259)
.+..|...|..+ ++.|..|||+++|+++..+.+.++.|...++
T Consensus 18 ~d~~IL~~L~~~-~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~ 60 (171)
T 2ia0_A 18 LDRNILRLLKKD-ARLTISELSEQLKKPESTIHFRIKKLQERGV 60 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 456788888875 7899999999999999999987777655443
No 475
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=68.62 E-value=0.79 Score=33.61 Aligned_cols=43 Identities=14% Similarity=0.058 Sum_probs=34.8
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCC
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
+..|...|..+ ++.|..|||+.+|+++..+.+.++.|...+++
T Consensus 6 ~~~il~~L~~~-~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i 48 (141)
T 1i1g_A 6 DKIILEILEKD-ARTPFTEIAKKLGISETAVRKRVKALEEKGII 48 (141)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 45677788764 78999999999999999999988877665544
No 476
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=68.32 E-value=0.42 Score=37.89 Aligned_cols=62 Identities=11% Similarity=-0.020 Sum_probs=44.5
Q ss_pred HcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCCC--C---CCceeecCHhhhhhh
Q 041250 8 QLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--D---EEQGYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~---~~~~y~~t~~~~~l~ 70 (259)
++.|+..|... +++|..+||+.+++++..+.++++.|..-+++... . ..-.+.+|+.++.+.
T Consensus 50 q~~iL~~L~~~-~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 50 EHHILWIAYQL-NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHH-TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 44566677654 68999999999999999999999887666554211 1 122578999987544
No 477
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=67.45 E-value=26 Score=29.80 Aligned_cols=93 Identities=12% Similarity=0.016 Sum_probs=58.0
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeEEEeC----CCCCC-----CCCccEEee
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLKYVGG----DMFKA-----ISPAYAVLL 179 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~----d~~~~-----~~~~D~~~~ 179 (259)
+....+||-+|+|. |.++..+++.....++++.|. ++-.+.+++ ..+.+ +-.. |+.+. ..++|+++-
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~~v~~~~~~g~D~vid 266 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC-INPQDFSKPIQEVLIEMTDGGVDYSFE 266 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEE-ECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceE-eccccccccHHHHHHHHhCCCCCEEEE
Confidence 55667888888765 888888888763337899986 666666665 22222 1111 11110 114788764
Q ss_pred hhhhccCChHHHHHHHHHHHHhcccCCCC-cEEEEEee
Q 041250 180 KWILLDWNDEECVKILKKCKEAITRDGKK-RKVIIKDM 216 (259)
Q Consensus 180 ~~vlh~~~d~~~~~il~~~~~~L~p~~~g-g~lli~e~ 216 (259)
.- .. ...++.+.+.|++ + |+++++-.
T Consensus 267 ~~-----g~---~~~~~~~~~~l~~---~~G~iv~~G~ 293 (373)
T 2fzw_A 267 CI-----GN---VKVMRAALEACHK---GWGVSVVVGV 293 (373)
T ss_dssp CS-----CC---HHHHHHHHHTBCT---TTCEEEECSC
T ss_pred CC-----Cc---HHHHHHHHHhhcc---CCcEEEEEec
Confidence 42 11 1357788899999 9 99887754
No 478
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=67.35 E-value=0.42 Score=36.20 Aligned_cols=63 Identities=14% Similarity=0.079 Sum_probs=42.2
Q ss_pred HcCcchhhhcC-CCCCCHHHHHHHcCCCccccccceeccccccCCCCC--CCCc---eeecCHhhhhhh
Q 041250 8 QLGIPDIINKH-GKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNNN--DEEQ---GYVLTNASKLLL 70 (259)
Q Consensus 8 ~l~lf~~L~~~-~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~~--~~~~---~y~~t~~~~~l~ 70 (259)
++.|+..|... ++++|..+||+.+++++..+.++++.|..-+++... ..+. .+.+|+.++.+.
T Consensus 48 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 48 QYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHH
Confidence 45566666653 268999999999999999999999888766654211 1222 478898887553
No 479
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=67.26 E-value=54 Score=27.29 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=58.0
Q ss_pred cCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCC--CCC------CCCCccEEeehh
Q 041250 112 FEGLNSLVDVGGG-TGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGD--MFK------AISPAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d--~~~------~~~~~D~~~~~~ 181 (259)
.....+|+=.|+| .|.++..+++....-.+++.|. ++-.+.+++......+-..+ ..+ ...++|+++-.-
T Consensus 158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~ 237 (346)
T 4a2c_A 158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETA 237 (346)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECS
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcccccccc
Confidence 4556778878775 4667777888876556788887 67777777633222222111 111 112367655431
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMIK 218 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~ 218 (259)
.. ...++...+.+++ +|+++++-...
T Consensus 238 -----G~---~~~~~~~~~~l~~---~G~~v~~g~~~ 263 (346)
T 4a2c_A 238 -----GV---PQTVELAVEIAGP---HAQLALVGTLH 263 (346)
T ss_dssp -----CS---HHHHHHHHHHCCT---TCEEEECCCCS
T ss_pred -----cc---cchhhhhhheecC---CeEEEEEeccC
Confidence 21 2357778888999 89988776543
No 480
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=66.92 E-value=0.68 Score=32.03 Aligned_cols=60 Identities=12% Similarity=0.020 Sum_probs=42.9
Q ss_pred HHcCcchhhhcCCCCCCHHHHHH-HcCCCccccccceeccccccCCCCCCCCceeecCHhhhhh
Q 041250 7 FQLGIPDIINKHGKPMTLNELVS-ALTINLSKTQCFFAQQKLVSSGNNNDEEQGYVLTNASKLL 69 (259)
Q Consensus 7 ~~l~lf~~L~~~~~~~t~~elA~-~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~y~~t~~~~~l 69 (259)
.++.|+-.|..+ ++.|+.+||+ ..+++...+.|=++.|.--|++ +.+++-..+|+.++.+
T Consensus 17 ~QfsiL~~L~~~-~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlV--e~~~~Dl~LT~~G~~~ 77 (95)
T 1bja_A 17 KTATILITIAKK-DFITAAEVREVHPDLGNAVVNSNIGVLIKKGLV--EKSGDGLIITGEAQDI 77 (95)
T ss_dssp HHHHHHHHHHHS-TTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSE--EEETTEEEECHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCe--ecCCCCeeeCHhHHHH
Confidence 455667778776 6999999999 9999999999866655444433 2212228899988744
No 481
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=66.63 E-value=1.4 Score=30.45 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHcCCCccccccceeccccccCCCC---CCCCceeecCHhhhhh
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN---NDEEQGYVLTNASKLL 69 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~---~~~~~~y~~t~~~~~l 69 (259)
++.+..+||+.++++...++|.+..|..-+++.. +..-+.-.+|+.++.+
T Consensus 35 ~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~ 87 (96)
T 2obp_A 35 TPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAAL 87 (96)
T ss_dssp CCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHH
Confidence 6799999999999999999998887655443321 1222346888888744
No 482
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=66.62 E-value=20 Score=31.75 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=53.7
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccC------------------CCCeEEEeCCCCCCCCCccEE
Q 041250 117 SLVDVGGGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESD------------------LVNLKYVGGDMFKAISPAYAV 177 (259)
Q Consensus 117 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~ri~~~~~d~~~~~~~~D~~ 177 (259)
+|.=||+|.=....+..-..-+.+++++|. ++.++..++. ..++++. .|..+-...+|+|
T Consensus 4 kI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~d~~ea~~~aDvV 82 (450)
T 3gg2_A 4 DIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-TEIEQAVPEADII 82 (450)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-SCHHHHGGGCSEE
T ss_pred EEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-CCHHHHHhcCCEE
Confidence 577788765333333222222568999998 6655544431 2334432 2221113358888
Q ss_pred eehhhhc-----cCChHHHHHHHHHHHHhcccCCCCcEEEEEeeeec
Q 041250 178 LLKWILL-----DWNDEECVKILKKCKEAITRDGKKRKVIIKDMIKE 219 (259)
Q Consensus 178 ~~~~vlh-----~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~ 219 (259)
++.---. .-+-.....+++.+.+.+++ |.++|.....+
T Consensus 83 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~----g~iVV~~STv~ 125 (450)
T 3gg2_A 83 FIAVGTPAGEDGSADMSYVLDAARSIGRAMSR----YILIVTKSTVP 125 (450)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHCCS----CEEEEECSCCC
T ss_pred EEEcCCCcccCCCcChHHHHHHHHHHHhhCCC----CCEEEEeeeCC
Confidence 8763111 00112567888999999987 67777665433
No 483
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=65.60 E-value=40 Score=25.18 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=48.5
Q ss_pred CCeEEEecCCchHHHHHHHH---HCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC--------CCCccEEeehhh
Q 041250 115 LNSLVDVGGGTGTAAKAIAK---AFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA--------ISPAYAVLLKWI 182 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~~---~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--------~~~~D~~~~~~v 182 (259)
..+|+=+|+| ..+..+++ +..+.+++++|. ++.++.+++. .+..+.+|..++ ..++|+++..-
T Consensus 39 ~~~v~IiG~G--~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~--g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~- 113 (183)
T 3c85_A 39 HAQVLILGMG--RIGTGAYDELRARYGKISLGIEIREEAAQQHRSE--GRNVISGDATDPDFWERILDTGHVKLVLLAM- 113 (183)
T ss_dssp TCSEEEECCS--HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT--TCCEEECCTTCHHHHHTBCSCCCCCEEEECC-
T ss_pred CCcEEEECCC--HHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC--CCCEEEcCCCCHHHHHhccCCCCCCEEEEeC-
Confidence 3578888875 44444333 221457999998 6666555532 355677777541 22578877642
Q ss_pred hccCChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 183 LLDWNDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 183 lh~~~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
-+++....++. ..+.+.| ..+++.
T Consensus 114 ---~~~~~~~~~~~-~~~~~~~---~~~ii~ 137 (183)
T 3c85_A 114 ---PHHQGNQTALE-QLQRRNY---KGQIAA 137 (183)
T ss_dssp ---SSHHHHHHHHH-HHHHTTC---CSEEEE
T ss_pred ---CChHHHHHHHH-HHHHHCC---CCEEEE
Confidence 12333334443 4555666 566654
No 484
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=65.59 E-value=20 Score=30.22 Aligned_cols=90 Identities=17% Similarity=0.078 Sum_probs=57.7
Q ss_pred cCCCCeEEEecC--CchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC--CC---------CCccEE
Q 041250 112 FEGLNSLVDVGG--GTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK--AI---------SPAYAV 177 (259)
Q Consensus 112 ~~~~~~vlDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~--~~---------~~~D~~ 177 (259)
+....+||-+|+ |.|..+..+++.. +.++++.|. ++..+.+++...... + |..+ .. .++|++
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~g~~~~-~--d~~~~~~~~~~~~~~~~~~~D~v 242 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSIGGEVF-I--DFTKEKDIVGAVLKATDGGAHGV 242 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHTTCCEE-E--ETTTCSCHHHHHHHHHTSCEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHcCCceE-E--ecCccHhHHHHHHHHhCCCCCEE
Confidence 566789999997 5788888888876 468999986 555555554222211 1 3221 10 147776
Q ss_pred eehhhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 178 LLKWILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 178 ~~~~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+..- .. ...++.+.+.|++ +|+++++-.
T Consensus 243 i~~~-----g~---~~~~~~~~~~l~~---~G~iv~~g~ 270 (347)
T 2hcy_A 243 INVS-----VS---EAAIEASTRYVRA---NGTTVLVGM 270 (347)
T ss_dssp EECS-----SC---HHHHHHHTTSEEE---EEEEEECCC
T ss_pred EECC-----Cc---HHHHHHHHHHHhc---CCEEEEEeC
Confidence 6442 21 1467888899999 899887654
No 485
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=65.38 E-value=25 Score=28.62 Aligned_cols=83 Identities=16% Similarity=0.219 Sum_probs=48.5
Q ss_pred CeEEEecC-Cc-hHH-HHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCCCCCccEEeehhhhccCChHHH
Q 041250 116 NSLVDVGG-GT-GTA-AKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKAISPAYAVLLKWILLDWNDEEC 191 (259)
Q Consensus 116 ~~vlDvGg-G~-G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~~~~~~vlh~~~d~~~ 191 (259)
.+|.=||+ |. |.. +..+++. +.+++++|. ++..+.+.+.. +.. .+..+....+|+|++. .++...
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~g--~~~--~~~~~~~~~aDvVi~a-----v~~~~~ 80 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDS--AHHLAAIEIAPEGRDRLQGMG--IPL--TDGDGWIDEADVVVLA-----LPDNII 80 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHS--SSEEEEECCSHHHHHHHHHTT--CCC--CCSSGGGGTCSEEEEC-----SCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHhcC--CCc--CCHHHHhcCCCEEEEc-----CCchHH
Confidence 47888888 64 332 2233332 458899997 55555544321 221 1222223368998876 455556
Q ss_pred HHHHHHHHHhcccCCCCcEEEE
Q 041250 192 VKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 192 ~~il~~~~~~L~p~~~gg~lli 213 (259)
..+++.+...++| +.+++
T Consensus 81 ~~v~~~l~~~l~~----~~ivv 98 (286)
T 3c24_A 81 EKVAEDIVPRVRP----GTIVL 98 (286)
T ss_dssp HHHHHHHGGGSCT----TCEEE
T ss_pred HHHHHHHHHhCCC----CCEEE
Confidence 7788888888887 45554
No 486
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=65.19 E-value=59 Score=26.99 Aligned_cols=92 Identities=10% Similarity=-0.006 Sum_probs=59.6
Q ss_pred cCCCCeEEEec--CCchHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEe--CCCCCC-----CC-CccEEeeh
Q 041250 112 FEGLNSLVDVG--GGTGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVG--GDMFKA-----IS-PAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~--~d~~~~-----~~-~~D~~~~~ 180 (259)
+....+||-+| ||.|..+..+++.. +.++++.|. ++-.+.+++......+-. .|+.+. .+ ++|+++-.
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~ 224 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDS 224 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEEC
Confidence 56678899998 57788888888876 569999998 666676665322221211 111110 12 48887754
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
-- . ..++.+.+.|++ +|+++++-.
T Consensus 225 ~g-----~----~~~~~~~~~l~~---~G~iv~~G~ 248 (334)
T 3qwb_A 225 VG-----K----DTFEISLAALKR---KGVFVSFGN 248 (334)
T ss_dssp CG-----G----GGHHHHHHHEEE---EEEEEECCC
T ss_pred CC-----h----HHHHHHHHHhcc---CCEEEEEcC
Confidence 22 1 246778889999 899888754
No 487
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=65.11 E-value=53 Score=27.40 Aligned_cols=90 Identities=17% Similarity=0.142 Sum_probs=58.2
Q ss_pred cCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCC-CC--------CCccEEeeh
Q 041250 112 FEGLNSLVDVGGG-TGTAAKAIAKAFPKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFK-AI--------SPAYAVLLK 180 (259)
Q Consensus 112 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~--------~~~D~~~~~ 180 (259)
+....+||-+|+| .|..+..+++.. +.++++.|. ++-.+.+++..... .+ |..+ .. .++|+++-.
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~-~~--d~~~~~~~~~~~~~~~~~d~vid~ 237 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELGADL-VV--NPLKEDAAKFMKEKVGGVHAAVVT 237 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCSE-EE--CTTTSCHHHHHHHHHSSEEEEEES
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHCCCCE-Ee--cCCCccHHHHHHHHhCCCCEEEEC
Confidence 5566788888865 588889998877 469999996 66666666522111 11 2221 10 247877644
Q ss_pred hhhccCChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 181 WILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 181 ~vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
- ... ..++...+.|++ +|+++++-.
T Consensus 238 ~-----g~~---~~~~~~~~~l~~---~G~~v~~g~ 262 (339)
T 1rjw_A 238 A-----VSK---PAFQSAYNSIRR---GGACVLVGL 262 (339)
T ss_dssp S-----CCH---HHHHHHHHHEEE---EEEEEECCC
T ss_pred C-----CCH---HHHHHHHHHhhc---CCEEEEecc
Confidence 2 211 357788889999 899887654
No 488
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=64.84 E-value=33 Score=23.96 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=48.8
Q ss_pred CeEEEecCCchHHHHHHHHHC--CCCeEEEeec-hHHHhhcccCCCCeEEEeCCCCCC-------CCCccEEeehhhhcc
Q 041250 116 NSLVDVGGGTGTAAKAIAKAF--PKLECTCFDL-PHVVNGLESDLVNLKYVGGDMFKA-------ISPAYAVLLKWILLD 185 (259)
Q Consensus 116 ~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~~~~~~vlh~ 185 (259)
.+|+=+|+ |..+..+++.. .+.+++++|. ++.++..++ ...+.++.+|..++ ..++|+++..-
T Consensus 5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~---- 77 (140)
T 1lss_A 5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA-EIDALVINGDCTKIKTLEDAGIEDADMYIAVT---- 77 (140)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HCSSEEEESCTTSHHHHHHTTTTTCSEEEECC----
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH-hcCcEEEEcCCCCHHHHHHcCcccCCEEEEee----
Confidence 46788877 45555444322 2568999998 555554432 11456777777541 23588877762
Q ss_pred CChHHHHHHHHHHHHhcccCCCCcEEEE
Q 041250 186 WNDEECVKILKKCKEAITRDGKKRKVII 213 (259)
Q Consensus 186 ~~d~~~~~il~~~~~~L~p~~~gg~lli 213 (259)
++......+..+.+.+++ +++++
T Consensus 78 -~~~~~~~~~~~~~~~~~~----~~ii~ 100 (140)
T 1lss_A 78 -GKEEVNLMSSLLAKSYGI----NKTIA 100 (140)
T ss_dssp -SCHHHHHHHHHHHHHTTC----CCEEE
T ss_pred -CCchHHHHHHHHHHHcCC----CEEEE
Confidence 333333445556666776 45554
No 489
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=63.94 E-value=8.8 Score=32.05 Aligned_cols=90 Identities=13% Similarity=0.087 Sum_probs=57.3
Q ss_pred cCCCCeEEEec--CCchHHHHHHHHHCCCCeEEEeechHHHhhccc-CCCCeE-EEeCC-CCCCCCCccEEeehhhhccC
Q 041250 112 FEGLNSLVDVG--GGTGTAAKAIAKAFPKLECTCFDLPHVVNGLES-DLVNLK-YVGGD-MFKAISPAYAVLLKWILLDW 186 (259)
Q Consensus 112 ~~~~~~vlDvG--gG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~ri~-~~~~d-~~~~~~~~D~~~~~~vlh~~ 186 (259)
.....+||=+| ||.|.++..+++.. +.++++.+.++-.+.+++ ..+.+- ....| +.+...++|+++-. .
T Consensus 150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~-----~ 223 (321)
T 3tqh_A 150 VKQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDL-----V 223 (321)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEES-----S
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEEC-----C
Confidence 66678888886 67799999999987 568888887655666665 333211 11111 11122358887653 2
Q ss_pred ChHHHHHHHHHHHHhcccCCCCcEEEEE
Q 041250 187 NDEECVKILKKCKEAITRDGKKRKVIIK 214 (259)
Q Consensus 187 ~d~~~~~il~~~~~~L~p~~~gg~lli~ 214 (259)
..+ .+..+.+.|++ +|+++.+
T Consensus 224 g~~----~~~~~~~~l~~---~G~iv~~ 244 (321)
T 3tqh_A 224 GGD----VGIQSIDCLKE---TGCIVSV 244 (321)
T ss_dssp CHH----HHHHHGGGEEE---EEEEEEC
T ss_pred CcH----HHHHHHHhccC---CCEEEEe
Confidence 222 23677889999 8998876
No 490
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=63.62 E-value=23 Score=31.60 Aligned_cols=96 Identities=20% Similarity=0.215 Sum_probs=56.7
Q ss_pred CeEEEecCCchH--HHHHHHHHCCCCeEEEeec-hHHHhhcccCC-----------------CCeEEEeCCCCCCCCCcc
Q 041250 116 NSLVDVGGGTGT--AAKAIAKAFPKLECTCFDL-PHVVNGLESDL-----------------VNLKYVGGDMFKAISPAY 175 (259)
Q Consensus 116 ~~vlDvGgG~G~--~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-----------------~ri~~~~~d~~~~~~~~D 175 (259)
.+|.=||+|.=. ++..|++..++.+++++|. ++.++..++.. .++++. .|..+....+|
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t-~~~~~~~~~aD 88 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFS-SDIPKAIAEAD 88 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEE-SCHHHHHHHCS
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEE-CCHHHHhhcCC
Confidence 478889998633 4455666766788999998 66666555311 122221 11111122478
Q ss_pred EEeehh--hhcc--------CChHHHHHHHHHHHHhcccCCCCcEEEEEee
Q 041250 176 AVLLKW--ILLD--------WNDEECVKILKKCKEAITRDGKKRKVIIKDM 216 (259)
Q Consensus 176 ~~~~~~--vlh~--------~~d~~~~~il~~~~~~L~p~~~gg~lli~e~ 216 (259)
+|++.- -.+. .+-.....+++.+.+.+++ |.++|...
T Consensus 89 vvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~----g~iVV~~S 135 (481)
T 2o3j_A 89 LIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGG----PKIVVEKS 135 (481)
T ss_dssp EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCS----CEEEEECS
T ss_pred EEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCC----CCEEEECC
Confidence 888772 2221 1113466788889999998 66666543
No 491
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=63.30 E-value=7.7 Score=32.92 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=60.0
Q ss_pred cCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhhccc-CCCCeE-EEeCCCCCC-----CC-CccEEeehh
Q 041250 112 FEGLNSLVDVGGGT-GTAAKAIAKAFPKLECTCFDL-PHVVNGLES-DLVNLK-YVGGDMFKA-----IS-PAYAVLLKW 181 (259)
Q Consensus 112 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~-~~~~d~~~~-----~~-~~D~~~~~~ 181 (259)
.....+||=+|+|. |.++..+++...--+++++|. ++-.+.+++ ..+.+- ....|+.+. .. ++|+++-.-
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~ 243 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAG 243 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECC
Confidence 56667888888876 888888888764337999998 666777776 222211 011122211 11 488887531
Q ss_pred hhccCChHHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 041250 182 ILLDWNDEECVKILKKCKEAITRDGKKRKVIIKDMI 217 (259)
Q Consensus 182 vlh~~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~ 217 (259)
... ..++.+.+.|+| +|+++++-..
T Consensus 244 -----g~~---~~~~~~~~~l~~---~G~~v~~G~~ 268 (352)
T 3fpc_A 244 -----GDV---HTFAQAVKMIKP---GSDIGNVNYL 268 (352)
T ss_dssp -----SCT---THHHHHHHHEEE---EEEEEECCCC
T ss_pred -----CCh---HHHHHHHHHHhc---CCEEEEeccc
Confidence 111 357788889999 9999887654
No 492
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=63.19 E-value=0.17 Score=41.14 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=44.9
Q ss_pred HHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC-CC--C-----CceeecCHhhh
Q 041250 3 LKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN-ND--E-----EQGYVLTNASK 67 (259)
Q Consensus 3 L~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~-~~--~-----~~~y~~t~~~~ 67 (259)
|..-.++.|+..|.. +|.|+.|||+.+|+++..+++-|+.|...+++.. .. . .-.|++++.+.
T Consensus 9 L~~~~R~~IL~~L~~--g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 9 LGNKVRRDLLSHLTC--MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HTSHHHHHHHHHHTT--TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred hCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence 333467778999986 8999999999999999999997777665554421 11 1 22488877643
No 493
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=63.13 E-value=1.9 Score=25.00 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=21.8
Q ss_pred CCCHHHHHHHcCCCccccccceecc
Q 041250 21 PMTLNELVSALTINLSKTQCFFAQQ 45 (259)
Q Consensus 21 ~~t~~elA~~~~~~~~~l~~ll~~~ 45 (259)
..|..+||+.+|++...+.+++...
T Consensus 21 g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 4899999999999999998877654
No 494
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=62.91 E-value=53 Score=29.37 Aligned_cols=101 Identities=13% Similarity=0.082 Sum_probs=59.8
Q ss_pred CCeEEEecCCchHHHHHHH-HHCCCC-eEEEeec-hH----HHhhcccC--------------------CCCeEEEeCCC
Q 041250 115 LNSLVDVGGGTGTAAKAIA-KAFPKL-ECTCFDL-PH----VVNGLESD--------------------LVNLKYVGGDM 167 (259)
Q Consensus 115 ~~~vlDvGgG~G~~~~~l~-~~~p~~-~~~~~D~-~~----~~~~a~~~--------------------~~ri~~~~~d~ 167 (259)
..+|.=||.|.=....+.. .+.|+. +++++|+ ++ .++..++. ..++.+. .|
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~t-td- 95 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECT-PD- 95 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEE-SC-
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEe-Cc-
Confidence 4578889988755544433 334567 8999998 56 55544331 2344443 23
Q ss_pred CCCCCCccEEeehhhhcc-------CChHHHHHHHHHHHHhcccCCCCcEEEEEeeeecCC
Q 041250 168 FKAISPAYAVLLKWILLD-------WNDEECVKILKKCKEAITRDGKKRKVIIKDMIKENR 221 (259)
Q Consensus 168 ~~~~~~~D~~~~~~vlh~-------~~d~~~~~il~~~~~~L~p~~~gg~lli~e~~~~~~ 221 (259)
.+....+|+|++.-.-.. -+-+......+.+.+.++| |.++|.+...+..
T Consensus 96 ~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~----g~iVV~~STv~pg 152 (478)
T 3g79_A 96 FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKP----GMLVVLESTITPG 152 (478)
T ss_dssp GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCT----TCEEEECSCCCTT
T ss_pred HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCC----CcEEEEeCCCChH
Confidence 233346898887632211 1224456778889999998 5666666555544
No 495
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=62.88 E-value=1.2 Score=27.57 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=28.2
Q ss_pred chhhhcCCCCCCHHHHHHHc-----CCCccccccceeccccc
Q 041250 12 PDIINKHGKPMTLNELVSAL-----TINLSKTQCFFAQQKLV 48 (259)
Q Consensus 12 f~~L~~~~~~~t~~elA~~~-----~~~~~~l~~ll~~~~~~ 48 (259)
...+... ++.|++||++.+ +++...++|-|..++.+
T Consensus 11 ~~ll~~~-~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg~v 51 (64)
T 2p5k_A 11 REIITSN-EIETQDELVDMLKQDGYKVTQATVSRDIKELHLV 51 (64)
T ss_dssp HHHHHHS-CCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHTCE
T ss_pred HHHHHcC-CCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCCE
Confidence 3455543 789999999999 99999999988765543
No 496
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=61.96 E-value=0.84 Score=36.17 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=45.3
Q ss_pred HHHHHHcCcchhhhcCCCCCCHHHHHHHcCCCccccccceeccccccCCCC--C-----CCCceeecCHhhh
Q 041250 3 LKCAFQLGIPDIINKHGKPMTLNELVSALTINLSKTQCFFAQQKLVSSGNN--N-----DEEQGYVLTNASK 67 (259)
Q Consensus 3 L~~a~~l~lf~~L~~~~~~~t~~elA~~~~~~~~~l~~ll~~~~~~~~~~~--~-----~~~~~y~~t~~~~ 67 (259)
|..-.++.|+..|.. +|.|+.|||+.+|+++..+++.|+.|...+++.. . ...-.|++|+...
T Consensus 12 L~~~~rl~IL~~L~~--~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 12 LGNETRRRILFLLTK--RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHSHHHHHHHHHHHH--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred hCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 344567888899976 8999999999999999999998877766554421 1 1122477776543
No 497
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=61.95 E-value=1.7 Score=27.66 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=20.9
Q ss_pred CCHHHHHHHcCCCccccccceecc
Q 041250 22 MTLNELVSALTINLSKTQCFFAQQ 45 (259)
Q Consensus 22 ~t~~elA~~~~~~~~~l~~ll~~~ 45 (259)
+|..|||+.+|+++..++++|..-
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~ 24 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGK 24 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCC
Confidence 478999999999999999988653
No 498
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=61.56 E-value=2 Score=29.46 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHcCCCccccccceecc
Q 041250 20 KPMTLNELVSALTINLSKTQCFFAQQ 45 (259)
Q Consensus 20 ~~~t~~elA~~~~~~~~~l~~ll~~~ 45 (259)
++.|+++||+.+|++++.+.++|...
T Consensus 18 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 18 SQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 58999999999999999999988765
No 499
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=61.25 E-value=3.8 Score=28.13 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=33.9
Q ss_pred HHHHHcCcch-hhhcCCCCC-CHHHHHHHcCCCccccccceeccccccCC
Q 041250 4 KCAFQLGIPD-IINKHGKPM-TLNELVSALTINLSKTQCFFAQQKLVSSG 51 (259)
Q Consensus 4 ~~a~~l~lf~-~L~~~~~~~-t~~elA~~~~~~~~~l~~ll~~~~~~~~~ 51 (259)
...++..|.+ .+.. +... |..+||+.+|++...+++-|..|...+++
T Consensus 17 ~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli 65 (102)
T 1v4r_A 17 ATHFRTLIKSGELAP-GDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLV 65 (102)
T ss_dssp HHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCC
T ss_pred HHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 3345555665 4443 3455 99999999999999999988877766654
No 500
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=61.01 E-value=21 Score=29.82 Aligned_cols=65 Identities=22% Similarity=0.224 Sum_probs=40.0
Q ss_pred CCeEEEecCCchH--HHHHHHHHCCCCeEEEeechH-HHhhccc----CCCCeEEEeCCCCCCCCCccEEeehh
Q 041250 115 LNSLVDVGGGTGT--AAKAIAKAFPKLECTCFDLPH-VVNGLES----DLVNLKYVGGDMFKAISPAYAVLLKW 181 (259)
Q Consensus 115 ~~~vlDvGgG~G~--~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~ri~~~~~d~~~~~~~~D~~~~~~ 181 (259)
..+|.=||+|+.. ++..++.+..--+++.+|+.+ ....+.. ..++++.. .|+ +...++|+|+..-
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t-~d~-~~l~~aD~Vi~aa 85 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEIS-KDL-SASAHSKVVIFTV 85 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEE-SCG-GGGTTCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEe-CCH-HHHCCCCEEEEcC
Confidence 4689999999633 555556554333799999843 2222222 33477663 665 5667899998874
Done!