Query 041251
Match_columns 213
No_of_seqs 157 out of 1159
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 08:30:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 97.8 3E-05 1E-09 57.8 5.0 66 147-212 34-100 (110)
2 2i68_A Protein EMRE; transmemb 97.7 2E-05 6.8E-10 61.2 3.0 66 147-212 34-100 (137)
3 1nro_R Receptor based peptide 32.5 17 0.00058 19.3 1.0 14 17-30 9-22 (27)
4 1nrp_R Receptor based peptide 23.6 34 0.0012 18.0 1.2 14 17-30 9-22 (26)
5 1wa5_B Importin alpha subunit; 14.9 55 0.0019 28.8 1.4 37 1-37 1-38 (530)
6 3hki_C Proteinase-activated re 14.4 71 0.0024 16.4 1.1 12 18-29 6-17 (21)
7 3tlw_A GLR4197 protein, GLIC; 10.4 4.8E+02 0.016 21.4 5.9 13 141-153 297-309 (321)
8 4dve_A Biotin transporter BIOY 9.7 1.6E+02 0.0054 23.5 2.4 55 135-194 9-66 (198)
9 3d8m_A BPP, baseplate protein, 8.4 92 0.0031 24.3 0.4 10 1-10 11-20 (165)
10 1e0f_I Haemadin, factor IIA; c 6.1 4.1E+02 0.014 16.2 2.5 15 17-31 41-55 (57)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.76 E-value=3e-05 Score=57.77 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhhhhcccchHhHHHHH-hhhhhHHHHHHHHHhhccCCChhHHHhhhheeeeeEe
Q 041251 147 VPTGLATALDVNLSNESLVFISVTFATMC-KSASPIFLLVFAFAFRLESPSIKLLGIIIIISIGVLF 212 (213)
Q Consensus 147 lP~sl~~~~~i~~~n~sL~~vsVsf~q~i-Ks~tPifv~ll~~l~~~e~~s~~~~lsl~lIv~Gv~l 212 (213)
+-..+++.++..+-..+++++|++....+ ..+.|+++.++++++++|++++..++++.+|+.|+.+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~ 100 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLI 100 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 34556778888888999999999999888 8999999999999999999999999999999999853
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.67 E-value=2e-05 Score=61.20 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhhhhcccchHhHHHHH-hhhhhHHHHHHHHHhhccCCChhHHHhhhheeeeeEe
Q 041251 147 VPTGLATALDVNLSNESLVFISVTFATMC-KSASPIFLLVFAFAFRLESPSIKLLGIIIIISIGVLF 212 (213)
Q Consensus 147 lP~sl~~~~~i~~~n~sL~~vsVsf~q~i-Ks~tPifv~ll~~l~~~e~~s~~~~lsl~lIv~Gv~l 212 (213)
+-..+++++...+-+.+++++|++....+ ..+.|++++++++++++|++++..++++++|+.|+.+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~l 100 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLI 100 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 34556788888999999999999988777 9999999999999999999999999999999999864
No 3
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=32.47 E-value=17 Score=19.34 Aligned_cols=14 Identities=43% Similarity=0.760 Sum_probs=9.8
Q ss_pred CCCCCCcccccccC
Q 041251 17 RNRDEKYVPFDIEN 30 (213)
Q Consensus 17 ~~~~~~~~~~~~~~ 30 (213)
.|...||+||--|+
T Consensus 9 rnpndkyepfwede 22 (27)
T 1nro_R 9 RNPNDKYEPFWEDE 22 (27)
T ss_pred cCCCcccCccccch
Confidence 45667999996443
No 4
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=23.58 E-value=34 Score=17.99 Aligned_cols=14 Identities=43% Similarity=0.760 Sum_probs=10.0
Q ss_pred CCCCCCcccccccC
Q 041251 17 RNRDEKYVPFDIEN 30 (213)
Q Consensus 17 ~~~~~~~~~~~~~~ 30 (213)
.|...||+||--|+
T Consensus 9 rnpndkyepfwede 22 (26)
T 1nrp_R 9 RNPNDKYEPFWEDE 22 (26)
T ss_pred cCCCcccCcccccc
Confidence 36678999996443
No 5
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=14.90 E-value=55 Score=28.84 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=8.0
Q ss_pred CCCCCCCCCCccccccCCCCCCccc-ccccCCCccccc
Q 041251 1 MQNGGDSPDVDSIHGERNRDEKYVP-FDIENGSETDVS 37 (213)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 37 (213)
|.||.++|..++-+......-|+.. .|.|+..++-.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 38 (530)
T 1wa5_B 1 MDNGTDSSTSKFVPEYRRTNFKNKGRFSADELRRRRDT 38 (530)
T ss_dssp -----------CCCGGGCC-----------CCCCCTTS
T ss_pred CCCccccCCCCCchHHHHHHHhccCCCChHHHHHhHHH
Confidence 7899999997764443334456656 776666555444
No 6
>3hki_C Proteinase-activated receptor 1; serine protease, acute phase, blood coagulation, cleavage on basic residues, disulfide bond; HET: NAG; 2.20A {Homo sapiens} PDB: 3hkj_C*
Probab=14.44 E-value=71 Score=16.37 Aligned_cols=12 Identities=42% Similarity=0.731 Sum_probs=7.8
Q ss_pred CCCCCccccccc
Q 041251 18 NRDEKYVPFDIE 29 (213)
Q Consensus 18 ~~~~~~~~~~~~ 29 (213)
|-..+|+||+-|
T Consensus 6 n~~~~fEp~~~d 17 (21)
T 3hki_C 6 NPNDKYEPFWED 17 (26)
T ss_pred cCcccccccccc
Confidence 345688999443
No 7
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=10.37 E-value=4.8e+02 Score=21.42 Aligned_cols=13 Identities=8% Similarity=-0.120 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 041251 141 DYYVRVVPTGLAT 153 (213)
Q Consensus 141 ~~~~~vlP~sl~~ 153 (213)
.|.|.++|++++.
T Consensus 297 ~w~r~~fp~~f~~ 309 (321)
T 3tlw_A 297 RASRIAFPVVFLL 309 (321)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhheeeehHHHHH
Confidence 3566666665433
No 8
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=9.71 E-value=1.6e+02 Score=23.46 Aligned_cols=55 Identities=13% Similarity=0.049 Sum_probs=35.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhhhh---cccchHhHHHHHhhhhhHHHHHHHHHhhccC
Q 041251 135 VSMSWRDYYVRVVPTGLATALDVNLSNES---LVFISVTFATMCKSASPIFLLVFAFAFRLES 194 (213)
Q Consensus 135 ~~~~~~~~~~~vlP~sl~~~~~i~~~n~s---L~~vsVsf~q~iKs~tPifv~ll~~l~~~e~ 194 (213)
..++.++-.|.+.-++++.++..+++..+ +-..|||+ .+....+++...+++.++
T Consensus 9 ~am~~~~k~r~l~~~alfaAliavla~i~~Ipip~~pVPi-----TlQtl~V~LaG~~LG~r~ 66 (198)
T 4dve_A 9 HAMTNNQKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPI-----ILQNMGIMMAGGLLGPKY 66 (198)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCCB-----CSTHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcCc-----cHHHHHHHHHHHHHChhH
Confidence 45666666888888888888877777653 33334443 356677777777776544
No 9
>3d8m_A BPP, baseplate protein, receptor binding protein; lactococcal phage P2, lactococcal phage TP901-1, receptor BI protein; 3.35A {Lactococcus phage tp901-1}
Probab=8.40 E-value=92 Score=24.31 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=2.4
Q ss_pred CCCCCCCCCC
Q 041251 1 MQNGGDSPDV 10 (213)
Q Consensus 1 ~~~~~~~~~~ 10 (213)
||||+.+.|+
T Consensus 11 m~ngae~i~~ 20 (165)
T 3d8m_A 11 MKNGAETIND 20 (165)
T ss_dssp ------CTTH
T ss_pred hhhhhHHHHH
Confidence 7888887654
No 10
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=6.07 E-value=4.1e+02 Score=16.21 Aligned_cols=15 Identities=13% Similarity=0.448 Sum_probs=8.5
Q ss_pred CCCCCCcccccccCC
Q 041251 17 RNRDEKYVPFDIENG 31 (213)
Q Consensus 17 ~~~~~~~~~~~~~~~ 31 (213)
-..+.+++-|+||++
T Consensus 41 pkpssefeefeidee 55 (57)
T 1e0f_I 41 PKPSSEFEEFEIDEE 55 (57)
T ss_dssp CCCCCCSCCCCCCCC
T ss_pred CCcccccceeecccc
Confidence 334446777776654
Done!