Query 041251
Match_columns 213
No_of_seqs 157 out of 1159
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 08:31:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041251.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041251hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e0fi_ g.3.15.2 (I:) Haemadin 6.1 1.9E+02 0.014 16.2 2.5 15 17-31 41-55 (57)
2 d2cuja1 a.4.1.18 (A:8-108) Tra 5.8 2E+02 0.014 18.5 2.9 16 22-37 19-34 (101)
3 d1o22a_ d.238.1.1 (A:) Hypothe 5.1 49 0.0036 22.7 -0.8 32 7-38 93-124 (149)
4 d1v54l_ f.23.6.1 (L:) Mitochon 4.4 3.3E+02 0.024 15.0 4.1 24 65-88 12-35 (46)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 3.7 3.1E+02 0.023 13.6 3.1 20 75-94 10-29 (32)
6 d1oksa_ a.8.5.1 (A:) RNA polym 3.5 1.8E+02 0.013 16.7 1.0 9 170-178 38-46 (54)
7 d1uptb_ a.193.1.1 (B:) Golgi a 3.3 1.9E+02 0.014 16.9 1.0 19 184-202 11-29 (58)
8 d1tlha_ a.150.1.1 (A:) Anti-si 3.2 2.1E+02 0.016 18.1 1.2 30 149-180 33-62 (89)
9 d1jb0i_ f.23.17.1 (I:) Subunit 2.7 4.7E+02 0.034 13.6 2.8 29 160-188 3-31 (38)
10 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.5 9.9E+02 0.072 17.2 5.9 53 145-201 4-56 (248)
No 1
>d1e0fi_ g.3.15.2 (I:) Haemadin {Indian leech (Haemadipsa sylvestris) [TaxId: 13555]}
Probab=6.07 E-value=1.9e+02 Score=16.21 Aligned_cols=15 Identities=13% Similarity=0.448 Sum_probs=8.5
Q ss_pred CCCCCCcccccccCC
Q 041251 17 RNRDEKYVPFDIENG 31 (213)
Q Consensus 17 ~~~~~~~~~~~~~~~ 31 (213)
-..+.+++-|+||++
T Consensus 41 pkpssefeefeidee 55 (57)
T d1e0fi_ 41 PKPSSEFEEFEIDEE 55 (57)
T ss_dssp CCCCCCSCCCCCCCC
T ss_pred CCcccccceeecccc
Confidence 334446777776654
No 2
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.83 E-value=2e+02 Score=18.53 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=11.3
Q ss_pred CcccccccCCCccccc
Q 041251 22 KYVPFDIENGSETDVS 37 (213)
Q Consensus 22 ~~~~~~~~~~~~~~~~ 37 (213)
+.+|.|+++.++.+.-
T Consensus 19 ~~~pldi~~~p~~~lL 34 (101)
T d2cuja1 19 SAPPLNLTGLPGTEKL 34 (101)
T ss_dssp SCCCCCCTTSTTTTTS
T ss_pred CCCCCCccCCCChhhc
Confidence 5678888887766544
No 3
>d1o22a_ d.238.1.1 (A:) Hypothetical protein TM0875 {Thermotoga maritima [TaxId: 2336]}
Probab=5.08 E-value=49 Score=22.68 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=26.3
Q ss_pred CCCCccccccCCCCCCcccccccCCCcccccc
Q 041251 7 SPDVDSIHGERNRDEKYVPFDIENGSETDVSL 38 (213)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (213)
+-++|.||..||.-.-|+|+..-+.-+|++-+
T Consensus 93 ~y~~mki~s~~n~y~~yvpys~vk~knr~e~v 124 (149)
T d1o22a_ 93 SYGDMKILSEKNWYKIYVPYSSVKKKNRNELV 124 (149)
T ss_dssp EETTEEEEEETTEEEEEEEGGGSTTCCHHHHH
T ss_pred ccCceEEecCCcEEEEEeehHHhhhccHHHHH
Confidence 45789999999999999999987777776543
No 4
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.38 E-value=3.3e+02 Score=15.00 Aligned_cols=24 Identities=8% Similarity=0.164 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHH
Q 041251 65 VSAADVLKTLFLILMWYTFSTFLT 88 (213)
Q Consensus 65 ~~~~~~l~~~~~i~~w~~~Si~~~ 88 (213)
.+..+..+..+...+|+.++.+.-
T Consensus 12 Fsv~Nk~rLla~m~~~fGsgfa~P 35 (46)
T d1v54l_ 12 FSVENKWRLLAMMTLFFGSGFAAP 35 (46)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhccccch
Confidence 344445666666777777664443
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.68 E-value=3.1e+02 Score=13.56 Aligned_cols=20 Identities=10% Similarity=0.316 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 041251 75 FLILMWYTFSTFLTLYNKTL 94 (213)
Q Consensus 75 ~~i~~w~~~Si~~~~~NK~l 94 (213)
.++.+++...+++++..|.+
T Consensus 10 vfialffgiavgiifaiksi 29 (32)
T d2e74e1 10 VFIALFFGIAVGIIFAIKSI 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhheeeEEEE
Confidence 34555666666777766653
No 6
>d1oksa_ a.8.5.1 (A:) RNA polymerase alpha subunit {Measles virus [TaxId: 11234]}
Probab=3.45 E-value=1.8e+02 Score=16.66 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=6.5
Q ss_pred hHHHHHhhh
Q 041251 170 TFATMCKSA 178 (213)
Q Consensus 170 sf~q~iKs~ 178 (213)
-||||+|+.
T Consensus 38 eF~QMl~~I 46 (54)
T d1oksa_ 38 KFHQMLVKI 46 (54)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 488888863
No 7
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.30 E-value=1.9e+02 Score=16.91 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=11.2
Q ss_pred HHHHHHhhccCCChhHHHh
Q 041251 184 LVFAFAFRLESPSIKLLGI 202 (213)
Q Consensus 184 ~ll~~l~~~e~~s~~~~ls 202 (213)
++++|++++|..+....++
T Consensus 11 vLfeYMmG~E~~tlaKVi~ 29 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVIT 29 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHcCcchhHHHHHHH
Confidence 5666777766665544443
No 8
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=3.20 E-value=2.1e+02 Score=18.11 Aligned_cols=30 Identities=10% Similarity=0.206 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhhhcccchHhHHHHHhhhhh
Q 041251 149 TGLATALDVNLSNESLVFISVTFATMCKSASP 180 (213)
Q Consensus 149 ~sl~~~~~i~~~n~sL~~vsVsf~q~iKs~tP 180 (213)
++++.=+++ -+-+..+.-.||-||+|++++
T Consensus 33 I~FLNE~G~--r~~G~eft~~sFrqm~~~Lt~ 62 (89)
T d1tlha_ 33 IAFLNEIGV--THEGRKLNQNSFRKIVSELTQ 62 (89)
T ss_dssp HHHHHHTTC--EETTEECCHHHHHHHHHSSCH
T ss_pred HHHHHHhCC--CcccHHHHHhHHHHHHHHCCH
Confidence 455554444 467999999999999999876
No 9
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=2.66 E-value=4.7e+02 Score=13.65 Aligned_cols=29 Identities=14% Similarity=0.230 Sum_probs=18.9
Q ss_pred hhhhcccchHhHHHHHhhhhhHHHHHHHH
Q 041251 160 SNESLVFISVTFATMCKSASPIFLLVFAF 188 (213)
Q Consensus 160 ~n~sL~~vsVsf~q~iKs~tPifv~ll~~ 188 (213)
++.|-.|+|.=|.-++--+.|..++-+.+
T Consensus 3 G~yAAsyLPwI~iPvv~wl~p~vvMglLF 31 (38)
T d1jb0i_ 3 GSYAASFLPWIFIPVVCWLMPTVVMGLLF 31 (38)
T ss_dssp CSSTTTTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred chhHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 45566677777777777777776665543
No 10
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.53 E-value=9.9e+02 Score=17.23 Aligned_cols=53 Identities=13% Similarity=-0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchHhHHHHHhhhhhHHHHHHHHHhhccCCChhHHH
Q 041251 145 RVVPTGLATALDVNLSNESLVFISVTFATMCKSASPIFLLVFAFAFRLESPSIKLLG 201 (213)
Q Consensus 145 ~vlP~sl~~~~~i~~~n~sL~~vsVsf~q~iKs~tPifv~ll~~l~~~e~~s~~~~l 201 (213)
+++.++++.++..+..-..+..-+..+..++-. .++++.|++..+|.-..+++
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~~vy~s~r~~p~kyi 56 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLI----LSSAGLYIFANRKAYAWRYV 56 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHHHHH----HHHHHHHHHSSSCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHH----HHHheEEEEEccCccceehh
Done!