BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041252
(450 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 42/68 (61%)
Query: 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKT 124
E P F CPISLE M+DPV + TGQTYERS+I KW G TCP + + L +TPN
Sbjct: 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 63
Query: 125 LYHLIHTW 132
L LI W
Sbjct: 64 LKSLIALW 71
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 100
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 50 ERLDLKKMIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPT 109
E + K AE+D ++ P F P+ M DPV L +G +RS IL+ L T P
Sbjct: 10 EEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-LNSPTDPF 68
Query: 110 TMQELWDDSVTPNKTLYHLIHTWFSQK 136
Q L + + P L I W +K
Sbjct: 69 NRQTLTESMLEPVPELKEQIQAWMREK 95
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
Length = 85
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 59 AELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDS 118
AE+D ++ P F P+ M DPV L +G +RS IL+ L T P Q L +
Sbjct: 4 AEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTESM 62
Query: 119 VTPNKTLYHLIHTWFSQK 136
+ P L I W +K
Sbjct: 63 LEPVPELKEQIQAWMREK 80
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 52 LDLKKMIAELDLA----EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTC 107
+D+ ++ +++D EIP IS E M++P +G TY+R +I + +
Sbjct: 85 MDMDELFSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFD 144
Query: 108 PTTMQELWDDSVTPNKTLYHLIHTWFSQ 135
P T L D + PN + +I + +
Sbjct: 145 PVTRSPLTQDQLIPNLAMKEVIDAFIQE 172
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 2/182 (1%)
Query: 168 QALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SESK 226
+A ++L +IA+ ASA K +VD GGV ++ LL T V EA L N+ E+
Sbjct: 21 EAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAI 79
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
++ V +LV +L E + R + + D + + + L++L+ +
Sbjct: 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS 139
Query: 287 KRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS 346
+L +E +V G V LV+LL S D + + A L ++S
Sbjct: 140 TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199
Query: 347 LP 348
P
Sbjct: 200 GP 201
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 307 NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVR 366
+E +V G V LV+LL S D + + A L ++S P+ + A + V+
Sbjct: 76 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK 135
Query: 367 LLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAEL 426
LL + + A L +I P+E A VDAG L ++ S + V K+ + L
Sbjct: 136 LLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARAL 194
Query: 427 LKLCS 431
+ S
Sbjct: 195 ANIAS 199
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 313 VVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVS 372
+V G V LV+LL S D + + A L ++S P+ + A + V+LL
Sbjct: 40 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 99
Query: 373 EDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS 431
+ + A L +I P+E A VDAG L ++ S + V K+ + L + S
Sbjct: 100 SEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 157
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 319 VPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQY 378
V +LV+LL S D + + A L ++S P + A + V+LL + +
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 379 ALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS 431
A L +I P+E A VDAG L ++ S + V K+ + L + S
Sbjct: 64 AARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 115
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 60 ELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSV 119
+L+ ++P F+ P+ M+DPV L + + +K L T P L + V
Sbjct: 882 DLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV 941
Query: 120 TPNKTLYHLIHTWFSQKYLLMKK-RSEDVQGRASE 153
TPN+ L QK L KK + E+ + +ASE
Sbjct: 942 TPNEEL--------RQKILCFKKQKKEEAKHKASE 968
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 60 ELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSV 119
+L+ ++P F+ P+ M+DPV L + + +K L T P L + V
Sbjct: 896 DLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV 955
Query: 120 TPNKTLYHLIHTWFSQKYLLMKK-RSEDVQGRASE 153
TPN+ L QK L KK + E+ + +ASE
Sbjct: 956 TPNEEL--------RQKILCFKKQKKEEAKHKASE 982
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 35.0 bits (79), Expect = 0.095, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKT 124
EIP IS E M +P +G TY+R +I + + P T L D + PN
Sbjct: 9 EIPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLA 68
Query: 125 LYHLIHTWFSQ 135
+ +I + +
Sbjct: 69 MKEVIDAFIQE 79
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 53 DLKKMIAELDLA----EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCP 108
D+ ++ +++D +IP IS E M++P +G TY+R +I + + P
Sbjct: 188 DMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNP 247
Query: 109 TTMQELWDDSVTPNKTLYHLIHTWFSQ 135
T L + + PN + +I + S+
Sbjct: 248 VTRSPLTQEQLIPNLAMKEVIDAFISE 274
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 33/71 (46%)
Query: 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKT 124
+IP IS E M++P +G TY+R +I + + P T L + + PN
Sbjct: 1 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 60
Query: 125 LYHLIHTWFSQ 135
+ +I + S+
Sbjct: 61 MKEVIDAFISE 71
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 230 MQPAKV--SLLVDMLNEGSVETKINCTRLIEKLMEEKDFRP--EIVSSHRLLIGLMRLVK 285
M P V S +++M+ S E +++ T+ KL+ ++ P E++S+ ++ + +K
Sbjct: 15 MAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK 74
Query: 286 NKRHPNGILPGLSLLRSICLLNEVRS-LVVSIGAVPQLVELLPSLDPDCLQLALCILDAL 344
K + +L +I N +++ +V+ GAVP +ELL S D + A+ L +
Sbjct: 75 RKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 134
Query: 345 S 345
+
Sbjct: 135 A 135
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 230 MQPAKV--SLLVDMLNEGSVETKINCTRLIEKLMEEKDFRP--EIVSSHRLLIGLMRLVK 285
M P V S +++M+ S E +++ T+ KL+ ++ P E++S+ ++ + +K
Sbjct: 12 MAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK 71
Query: 286 NKRHPNGILPGLSLLRSICLLNEVRS-LVVSIGAVPQLVELLPSLDPDCLQLALCILDAL 344
K + +L +I N +++ +V+ GAVP +ELL S D + A+ L +
Sbjct: 72 RKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 131
Query: 345 S 345
+
Sbjct: 132 A 132
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 23/168 (13%)
Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES------K 226
L IA+ + K +VD G + SLL +H + +AV L N+ D K
Sbjct: 76 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQAVWALGNIAGDGSVFRDLVIK 134
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
+ P L V ++ + N T + L K+ P I + ++L L+RL+ +
Sbjct: 135 YGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHH 194
Query: 287 KRHPNGILPGLSLLRSICLL--------NEVRSLVVSIGAVPQLVELL 326
+L C NE +VV G VPQLV+LL
Sbjct: 195 DDP--------EVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLL 234
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 60 ELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSV 119
+L+ ++P F+ P+ +DPV L + + +K L T P L + V
Sbjct: 896 DLEYGDVPDEFLDPLXYTIXKDPVILPASKXNIDRSTIKAHLLSDSTDPFNRXPLKLEDV 955
Query: 120 TPNKTLYHLIHTWFSQKYLLMKK-RSEDVQGRASE 153
TPN+ L QK L KK + E+ + +ASE
Sbjct: 956 TPNEEL--------RQKILCFKKQKKEEAKHKASE 982
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES------K 226
L IA+ + K +VD G + SLL +H + +AV L N+ D + K
Sbjct: 101 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQAVWALGNIAGDGSAFRDLVIK 159
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
+ P L V L+ + N T + L K+ P + + ++L L+RL+
Sbjct: 160 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-- 217
Query: 287 KRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELL 326
H N +I L NE +VV G VPQLV+LL
Sbjct: 218 --HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 259
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES------K 226
L IA+ + K +VD G + SLL +H + +AV L N+ D + K
Sbjct: 70 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQAVWALGNIAGDGSAFRDLVIK 128
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
+ P L V L+ + N T + L K+ P + + ++L L+RL+
Sbjct: 129 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-- 186
Query: 287 KRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELL 326
H N +I L NE +VV G VPQLV+LL
Sbjct: 187 --HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 228
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES------K 226
L IA+ + K +VD G + SLL +H + +AV L N+ D + K
Sbjct: 74 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQAVWALGNIAGDGSAFRDLVIK 132
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
+ P L V L+ + N T + L K+ P + + ++L L+RL+
Sbjct: 133 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-- 190
Query: 287 KRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELL 326
H N +I L NE +VV G VPQLV+LL
Sbjct: 191 --HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 232
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES------K 226
L IA+ + K +VD G + SLL +H + +AV L N+ D + K
Sbjct: 109 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQAVWALGNIAGDGSAFRDLVIK 167
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
+ P L V L+ + N T + L K+ P + + ++L L+RL+
Sbjct: 168 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-- 225
Query: 287 KRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELL 326
H N +I L NE +VV G VPQLV+LL
Sbjct: 226 --HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 267
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES------K 226
L IA+ + K +VD G + SLL +H + +AV L N+ D + K
Sbjct: 70 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQAVWALGNIAGDGSAFRDLVIK 128
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
+ P L V L+ + N T + L K+ P + + ++L L+RL+
Sbjct: 129 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-- 186
Query: 287 KRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELL 326
H N +I L NE +VV G VPQLV+LL
Sbjct: 187 --HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 228
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES------K 226
L IA+ + K +VD G + SLL +H + +AV L N+ D + K
Sbjct: 74 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQAVWALGNIAGDGSAFRDLVIK 132
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
+ P L V L+ + N T + L K+ P + + ++L L+RL+
Sbjct: 133 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-- 190
Query: 287 KRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELL 326
H N +I L NE +VV G VPQLV+LL
Sbjct: 191 --HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 232
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES------K 226
L IA+ + K +VD G + SLL +H + +AV L N+ D + K
Sbjct: 75 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQAVWALGNIAGDGSAFRDLVIK 133
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
+ P L V L+ + N T + L K+ P + + ++L L+RL+
Sbjct: 134 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-- 191
Query: 287 KRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELL 326
H N +I L NE +VV G VPQLV+LL
Sbjct: 192 --HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 233
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES------K 226
L IA+ + K +VD G + SLL +H + +AV L N+ D + K
Sbjct: 75 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQAVWALGNIAGDGSAFRDLVIK 133
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
+ P L V L+ + N T + L K+ P + + ++L L+RL+
Sbjct: 134 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-- 191
Query: 287 KRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELL 326
H N +I L NE +VV G VPQLV+LL
Sbjct: 192 --HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 233
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES------K 226
L IA+ + K +VD G + SLL +H + +AV L N+ D + K
Sbjct: 75 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQAVWALGNIAGDGSAFRDLVIK 133
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
+ P L V L+ + N T + L K+ P + + ++L L+RL+
Sbjct: 134 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-- 191
Query: 287 KRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELL 326
H N +I L NE +VV G VPQLV+LL
Sbjct: 192 --HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 233
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES------K 226
L IA+ + K +VD G + SLL +H + +AV L N+ D + K
Sbjct: 81 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQAVWALGNIAGDGSAFRDLVIK 139
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
+ P L V L+ + N T + L K+ P + + ++L L+RL+
Sbjct: 140 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-- 197
Query: 287 KRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELL 326
H N +I L NE +VV G VPQLV+LL
Sbjct: 198 --HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 239
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES------K 226
L IA+ + K +VD G + SLL +H + +AV L N+ D + K
Sbjct: 125 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQAVWALGNIAGDGSAFRDLVIK 183
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
+ P L V L+ + N T + L K+ P + + ++L L+RL+
Sbjct: 184 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-- 241
Query: 287 KRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELL 326
H N +I L NE +VV G VPQLV+LL
Sbjct: 242 --HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES------K 226
L IA+ + K +VD G + SLL +H + +AV L N+ D + K
Sbjct: 111 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQAVWALGNIAGDGSAFRDLVIK 169
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
+ P L V L+ + N T + L K+ P + + ++L L+RL+
Sbjct: 170 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-- 227
Query: 287 KRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELL 326
H N +I L NE +VV G VPQLV+LL
Sbjct: 228 --HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 269
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 74/188 (39%), Gaps = 26/188 (13%)
Query: 164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS 223
Q + +A L IA+ + K ++D G V + LLG +S V +AV L N+ DS
Sbjct: 95 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDS 153
Query: 224 ESKTNLMQPAKVSL-LVDMLNEGSVETKI----NCTRLIEKLMEEKDFRPEIVSSHRLLI 278
+L+ L L+ LNE TK+ N T + K +P + L
Sbjct: 154 PKCRDLVLANGALLPLLAQLNE---HTKLSMLRNATWTLSNFCRGKP-QPSFEQTRPALP 209
Query: 279 GLMRLVKNKRHPNGILPGLSLLRSICL--------LNEVRSLVVSIGAVPQLVELLPSLD 330
L RL+ + +L C N+ V+ G P+LVELL
Sbjct: 210 ALARLIHSNDE--------EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 261
Query: 331 PDCLQLAL 338
P L AL
Sbjct: 262 PSVLIPAL 269
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES------K 226
L IA+ + K +VD G + SLL +H + +AV L N+ D + K
Sbjct: 125 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQAVWALGNIAGDGSAFRDLVIK 183
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
+ P L V L+ + N T + L K+ P + + ++L L+RL+
Sbjct: 184 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-- 241
Query: 287 KRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELL 326
H N +I L NE +VV G VPQLV+LL
Sbjct: 242 --HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES------K 226
L IA+ + K +VD G + SLL +H + +AV L N+ D + K
Sbjct: 125 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQAVWALGNIAGDGSAFRDLVIK 183
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
+ P L V L+ + N T + L K+ P + + ++L L+RL+
Sbjct: 184 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-- 241
Query: 287 KRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELL 326
H N +I L NE +VV G VPQLV+LL
Sbjct: 242 --HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 72/185 (38%), Gaps = 20/185 (10%)
Query: 164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS 223
Q + +A L IA+ + K ++D G V + LLG +S V +AV L N+ DS
Sbjct: 133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDS 191
Query: 224 ESKTNLM--QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLM 281
+L+ A + LL + + N T + K +P + L L
Sbjct: 192 PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP-QPSFEQTRPALPALA 250
Query: 282 RLVKNKRHPNGILPGLSLLRSICL--------LNEVRSLVVSIGAVPQLVELLPSLDPDC 333
RL+ H N +L C N+ V+ G P+LVELL P
Sbjct: 251 RLI----HSN----DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 302
Query: 334 LQLAL 338
L AL
Sbjct: 303 LIPAL 307
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 203 FTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKI 251
FT H +G+ LV L D + +MQP + M+N G+++ +I
Sbjct: 208 FTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEI 256
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 203 FTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKI 251
FT H +G+ LV L D + +MQP + M+N G+++ +I
Sbjct: 202 FTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEI 250
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 203 FTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKI 251
FT H +G+ LV L D + +MQP + M+N G+++ +I
Sbjct: 205 FTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEI 253
>pdb|1G4M|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4M|B Chain B, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4R|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|3GD1|C Chain C, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
pdb|3GD1|E Chain E, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
Length = 393
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 21/118 (17%)
Query: 100 FSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLK 159
F+ +Y CP M+E DD+V P+ T F + Y L + + + R L G LK
Sbjct: 244 FNTAQYKCPVAMEE-ADDTVAPSST--------FCKVYTLTPFLANNREKRGLALDGKLK 294
Query: 160 KVKGQ------ARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSE 211
R A +E+ I ++ K +V GG LLG S V E
Sbjct: 295 HEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSRGG------LLGDLASSDVAVE 346
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 203 FTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKI 251
FT H +G+ LV L D + +MQP + M+N G+++ +I
Sbjct: 208 FTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTIEPMINLGALDYEI 256
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 312 LVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDC---ANTIPNTVRLL 368
+V+ G VP+LVE + P+ LQL AL+++ G A A+ +P ++LL
Sbjct: 125 VVIQAGVVPRLVEFMRENQPEMLQLEAAW--ALTNIASGTSAQTKVVVDADAVPLFIQLL 182
Query: 369 MRVSEDCTQYALSILWSICKIA 390
S + + A +W++ +A
Sbjct: 183 YTGSVEVKEQA---IWALGNVA 201
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 211 EAVGVLVNLTLDSESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLM-EEKDFRP 268
EA L N+ + ++T ++ A V L + +L GSVE K + + + D+R
Sbjct: 150 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209
Query: 269 EIVSSHRL--LIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR-SLVVSIGAVPQLVEL 325
++ + + ++GL N P+ I L ++C + + V A+P L +L
Sbjct: 210 YVLQCNAMEPILGLF----NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 265
Query: 326 LPSLDPDCLQLALCILDALSSLPE 349
+ S+D + L A + LS P+
Sbjct: 266 IYSMDTETLVDACWAISYLSDGPQ 289
>pdb|3GC3|A Chain A, Crystal Structure Of Arrestin2s And Clathrin
Length = 385
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 18/112 (16%)
Query: 100 FSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLK 159
F+ +Y CP M+E DD+V P+ T F + Y L + + + R L G LK
Sbjct: 244 FNTAQYKCPVAMEE-ADDTVAPSST--------FCKVYTLTPFLANNREKRGLALDGKLK 294
Query: 160 KVKGQ------ARVQALKELHQIAAAHASARKTMVDEGG---VALISSLLGP 202
R A +E+ I ++ K +V GG V L +L+ P
Sbjct: 295 HEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSRGGDVAVELPFTLMHP 346
>pdb|1JSY|A Chain A, Crystal Structure Of Bovine Arrestin-2
pdb|1ZSH|A Chain A, Crystal Structure Of Bovine Arrestin-2 In Complex With
Inositol Hexakisphosphate (Ip6)
pdb|2WTR|A Chain A, Full Length Arrestin2
Length = 418
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 21/118 (17%)
Query: 100 FSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLK 159
F+ +Y CP M+E DD+V P+ T F + Y L + + + R L G LK
Sbjct: 244 FNTAQYKCPVAMEE-ADDTVAPSST--------FCKVYTLTPFLANNREKRGLALDGKLK 294
Query: 160 KVKGQ------ARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSE 211
R A +E+ I ++ K +V GG LLG S V E
Sbjct: 295 HEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSRGG------LLGDLASSDVAVE 346
>pdb|2WTR|B Chain B, Full Length Arrestin2
Length = 418
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 21/118 (17%)
Query: 100 FSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLK 159
F+ +Y CP M+E DD+V P+ T F + Y L + + + R L G LK
Sbjct: 244 FNTAQYKCPVAMEE-ADDTVAPSST--------FCKVYTLTPFLANNREKRGLALDGKLK 294
Query: 160 KVKGQ------ARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSE 211
R A +E+ I ++ K +V GG LLG S V E
Sbjct: 295 HEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSRGG------LLGDLASSDVAVE 346
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 312 LVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDC---ANTIPNTVRLL 368
+V+ G VP+LVE + P+ LQL AL+++ G A A+ +P ++LL
Sbjct: 38 VVIQAGVVPRLVEFMRENQPEMLQLEAAW--ALTNIASGTSAQTKVVVDADAVPLFIQLL 95
Query: 369 MRVSEDCTQYALSILWSICKIA 390
S + + A +W++ +A
Sbjct: 96 YTGSVEVKEQA---IWALGNVA 114
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 211 EAVGVLVNLTLDSESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLM-EEKDFRP 268
EA L N+ + ++T ++ A V L + +L GSVE K + + + D+R
Sbjct: 63 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 122
Query: 269 EIVSSHRL--LIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR-SLVVSIGAVPQLVEL 325
++ + + ++GL N P+ I L ++C + + V A+P L +L
Sbjct: 123 YVLQCNAMEPILGLF----NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 178
Query: 326 LPSLDPDCLQLALCILDALSSLPE 349
+ S+D + L A + LS P+
Sbjct: 179 IYSMDTETLVDACWAISYLSDGPQ 202
>pdb|1CJW|A Chain A, Serotonin N-Acetyltransferase Complexed With A Bisubstrate
Analog
Length = 166
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 72 CPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTL-YHLIH 130
CP++L+ +Q +TLC + L WF GR + LWD+ ++L H
Sbjct: 34 CPLNLDEVQHFLTLCPELS------LGWFVEGRLVA-FIIGSLWDEERLTQESLALHRPR 86
Query: 131 TWFSQKYLLMKKRSEDVQGRASELLG-TLKKVKGQARVQ 168
+ + L RS QG+ S LL L V Q V+
Sbjct: 87 GHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVR 125
>pdb|1L0C|A Chain A, Investigation Of The Roles Of Catalytic Residues In
Serotonin N- Acetyltransferase
Length = 207
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 72 CPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTL-YHLIH 130
CP++L+ +Q +TLC + L WF GR + LWD+ ++L H
Sbjct: 63 CPLNLDEVQHFLTLCPELS------LGWFVEGRLVA-FIIGSLWDEERLTQESLALHRPR 115
Query: 131 TWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDE 190
+ + L RS QG+ S LL + LH + A A R ++ E
Sbjct: 116 GHSAHLHALAVHRSFRQQGKGSVLL--------------WRYLHHVGAQPAVRRAVLMCE 161
Query: 191 GGVALISSLLGPFTSHAVGSEAVGVLVNLTL 221
AL+ F H G A+ V+ +LT
Sbjct: 162 D--ALV-PFFQRFGFHPAGPCAI-VVGSLTF 188
>pdb|1B6B|A Chain A, Melatonin Biosynthesis: The Structure Of Serotonin N-
Acetyltransferase At 2.5 A Resolution Suggests A
Catalytic Mechanism
pdb|1B6B|B Chain B, Melatonin Biosynthesis: The Structure Of Serotonin N-
Acetyltransferase At 2.5 A Resolution Suggests A
Catalytic Mechanism
Length = 174
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 72 CPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTL-YHLIH 130
CP++L+ +Q +TLC + L WF GR + LWD+ ++L H
Sbjct: 36 CPLNLDEVQHFLTLCPELS------LGWFVEGRLVA-FIIGSLWDEERLTQESLALHRPR 88
Query: 131 TWFSQKYLLMKKRSEDVQGRASELLG-TLKKVKGQARVQ 168
+ + L RS QG+ S LL L V Q V+
Sbjct: 89 GHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVR 127
>pdb|1IB1|E Chain E, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|F Chain F, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|G Chain G, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|H Chain H, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
Length = 200
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 72 CPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTL-YHLIH 130
CP++L+ +Q +TLC + L WF GR + LWD+ ++L H
Sbjct: 62 CPLNLDEVQHFLTLCPELS------LGWFVEGRLVA-FIIGSLWDEERLTQESLALHRPR 114
Query: 131 TWFSQKYLLMKKRSEDVQGRASELLG-TLKKVKGQARVQ 168
+ + L RS QG+ S LL L V Q V+
Sbjct: 115 GHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVR 153
>pdb|1KUV|A Chain A, X-Ray Crystallographic Studies Of Serotonin
N-Acetyltransferase Catalysis And Inhibition
pdb|1KUX|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
Acetyltransferase Catalysis And Inhibition
pdb|1KUY|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
Acetyltransferase Catalysis And Inhibition
Length = 207
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 26/151 (17%)
Query: 72 CPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTL-YHLIH 130
CP++L+ +Q +TLC + L WF GR + LWD+ ++L H
Sbjct: 63 CPLNLDEVQHFLTLCPELS------LGWFVEGRLVA-FIIGSLWDEERLTQESLALHRPR 115
Query: 131 TWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDE 190
+ + L RS QG+ S LL + LH + A A R ++ E
Sbjct: 116 GHSAHLHALAVHRSFRQQGKGSVLL--------------WRYLHHVGAQPAVRRAVLMCE 161
Query: 191 GGVALISSLLGPFTSHAVGSEAVGVLVNLTL 221
+ G H G A+ V+ +LT
Sbjct: 162 DALVPFYQRFG---FHPAGPCAI-VVGSLTF 188
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 312 LVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDC---ANTIPNTVRLL 368
+V+ G VP+LVE + P+ LQL AL+++ G A A+ +P ++LL
Sbjct: 38 VVIQAGVVPRLVEFMRENQPEMLQLEAAW--ALTNIASGTSAQTKVVVDADAVPLFIQLL 95
Query: 369 MRVSEDCTQYALSILWSICKIA 390
S + + A +W++ +A
Sbjct: 96 YTGSVEVKEQA---IWALGNVA 114
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 211 EAVGVLVNLTLDSESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLM-EEKDFRP 268
EA L N+ + ++T ++ A V L + +L GSVE K + + + D+R
Sbjct: 63 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 122
Query: 269 EIVSSHRL--LIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR-SLVVSIGAVPQLVEL 325
++ + + ++GL N P+ I L ++C + + V A+P L +L
Sbjct: 123 YVLQCNAMEPILGLF----NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 178
Query: 326 LPSLDPDCLQLALCILDALSSLPE 349
+ S+D + L A + LS P+
Sbjct: 179 IYSMDTETLVDACWAISYLSDGPQ 202
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 312 LVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDC---ANTIPNTVRLL 368
+V+ G VP+LVE + P+ LQL AL+++ G A A+ +P ++LL
Sbjct: 37 VVIQAGVVPRLVEFMRENQPEMLQLEAAW--ALTNIASGTSAQTKVVVDADAVPLFIQLL 94
Query: 369 MRVSEDCTQYALSILWSICKIA 390
S + + A +W++ +A
Sbjct: 95 YTGSVEVKEQA---IWALGNVA 113
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 211 EAVGVLVNLTLDSESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLM-EEKDFRP 268
EA L N+ + ++T ++ A V L + +L GSVE K + + + D+R
Sbjct: 62 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 121
Query: 269 EIVSSHRL--LIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR-SLVVSIGAVPQLVEL 325
++ + + ++GL N P+ I L ++C + + V A+P L +L
Sbjct: 122 YVLQCNAMEPILGLF----NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 177
Query: 326 LPSLDPDCLQLALCILDALSSLPE 349
+ S+D + L A + LS P+
Sbjct: 178 IYSMDTETLVDACWAISYLSDGPQ 201
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 312 LVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDC---ANTIPNTVRLL 368
+V+ G VP+LVE + P+ LQL AL+++ G A A+ +P ++LL
Sbjct: 39 VVIQAGVVPRLVEFMRENQPEMLQLEAAW--ALTNIASGTSAQTKVVVDADAVPLFIQLL 96
Query: 369 MRVSEDCTQYALSILWSICKIA 390
S + + A +W++ +A
Sbjct: 97 YTGSVEVKEQA---IWALGNVA 115
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 211 EAVGVLVNLTLDSESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLM-EEKDFRP 268
EA L N+ + ++T ++ A V L + +L GSVE K + + + D+R
Sbjct: 64 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 123
Query: 269 EIVSSHRL--LIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR-SLVVSIGAVPQLVEL 325
++ + + ++GL N P+ I L ++C + + V A+P L +L
Sbjct: 124 YVLQCNAMEPILGLF----NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 326 LPSLDPDCLQLALCILDALSSLPE 349
+ S+D + L A + LS P+
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQ 203
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 312 LVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDC---ANTIPNTVRLL 368
+V+ G VP+LVE + P+ LQL AL+++ G A A+ +P ++LL
Sbjct: 37 VVIQAGVVPRLVEFMRENQPEMLQLEAAW--ALTNIASGTSAQTKVVVDADAVPLFIQLL 94
Query: 369 MRVSEDCTQYALSILWSICKIA 390
S + + A +W++ +A
Sbjct: 95 YTGSVEVKEQA---IWALGNVA 113
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 211 EAVGVLVNLTLDSESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLM-EEKDFRP 268
EA L N+ + ++T ++ A V L + +L GSVE K + + + D+R
Sbjct: 62 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 121
Query: 269 EIVSSHRL--LIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR-SLVVSIGAVPQLVEL 325
++ + + ++GL N P+ I L ++C + + V A+P L +L
Sbjct: 122 YVLQCNAMEPILGLF----NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 177
Query: 326 LPSLDPDCLQLALCILDALSSLPE 349
+ S+D + L A + LS P+
Sbjct: 178 IYSMDTETLVDACWAISYLSDGPQ 201
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 312 LVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDC---ANTIPNTVRLL 368
+V+ G VP+LVE + P+ LQL AL+++ G A A+ +P ++LL
Sbjct: 39 VVIQAGVVPRLVEFMRENQPEMLQLEAAW--ALTNIASGTSAQTKVVVDADAVPLFIQLL 96
Query: 369 MRVSEDCTQYALSILWSICKIA 390
S + + A +W++ +A
Sbjct: 97 YTGSVEVKEQA---IWALGNVA 115
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 211 EAVGVLVNLTLDSESKTNLMQPAK-VSLLVDMLNEGSVETKINCTRLIEKLM-EEKDFRP 268
EA L N+ + ++T ++ A V L + +L GSVE K + + + D+R
Sbjct: 64 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 123
Query: 269 EIVSSHRL--LIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR-SLVVSIGAVPQLVEL 325
++ + + ++GL N P+ I L ++C + + V A+P L +L
Sbjct: 124 YVLQCNAMEPILGLF----NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 326 LPSLDPDCLQLALCILDALSSLPE 349
+ S+D + L A + LS P+
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQ 203
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 15/164 (9%)
Query: 173 LHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES------K 226
L IA+ + K +VD G + SLL +H + +AV L N+ + K
Sbjct: 144 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH-ISEQAVWALGNIAGAGSAFRDLVIK 202
Query: 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286
+ P L V L+ + N T + L K+ P + + ++L L+RL+
Sbjct: 203 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-- 260
Query: 287 KRHPNGILPGLSLLRSICLL----NEVRSLVVSIGAVPQLVELL 326
H N +I L NE +VV G VPQLV+LL
Sbjct: 261 --HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 302
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin
Conjugation Factor E4a
Length = 98
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 70 FVCPISLEPMQDPVTLCTGQ-TYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHL 128
F+ PI M DPV L + + T +RS I + L T P L D + PN L
Sbjct: 23 FLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL-LSDQTDPFNRSPLTMDQIRPNTELKEK 81
Query: 129 IHTWFSQK 136
I W +++
Sbjct: 82 IQRWLAER 89
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 34/160 (21%)
Query: 199 LLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQ-PAKVSLLVDMLNEGS-------VETK 250
L+ P + A L LTLD+E K L++ A + L+D+ G+ V T
Sbjct: 386 LIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTF 445
Query: 251 INCTRLIEKL----------------------MEEKDF---RPEIVSSHRLLIGLMRLVK 285
+N EK +++ DF R ++++ + L L K
Sbjct: 446 VNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAK 505
Query: 286 NKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVEL 325
+ H + L +L ++C L E+R VV G V L+ +
Sbjct: 506 TESHNSQELIA-RVLNAVCGLKELRGKVVQEGGVKALLRM 544
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,666,207
Number of Sequences: 62578
Number of extensions: 431788
Number of successful extensions: 1062
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1002
Number of HSP's gapped (non-prelim): 106
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)