Query 041252
Match_columns 450
No_of_seqs 365 out of 2355
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:16:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1.3E-27 2.8E-32 271.0 30.0 283 148-433 12-313 (2102)
2 PLN03200 cellulose synthase-in 100.0 2.3E-26 5E-31 260.9 29.6 281 149-435 446-767 (2102)
3 KOG4224 Armadillo repeat prote 99.9 4.4E-26 9.6E-31 215.3 17.5 282 151-439 128-412 (550)
4 KOG4224 Armadillo repeat prote 99.9 6.2E-26 1.4E-30 214.2 17.3 277 149-433 167-447 (550)
5 KOG0166 Karyopherin (importin) 99.9 2.7E-24 5.8E-29 216.0 24.5 281 148-433 108-394 (514)
6 KOG0166 Karyopherin (importin) 99.9 1.8E-22 3.9E-27 202.9 23.9 283 148-433 151-437 (514)
7 COG5064 SRP1 Karyopherin (impo 99.9 2E-21 4.4E-26 182.4 17.7 281 148-433 113-399 (526)
8 PF04564 U-box: U-box domain; 99.9 1.1E-22 2.3E-27 155.3 4.8 72 66-137 1-72 (73)
9 COG5064 SRP1 Karyopherin (impo 99.9 2.3E-20 4.9E-25 175.4 16.8 278 148-428 156-439 (526)
10 KOG2122 Beta-catenin-binding p 99.8 1.4E-18 3E-23 186.4 17.6 263 168-433 317-603 (2195)
11 KOG1048 Neural adherens juncti 99.8 5E-17 1.1E-21 168.6 24.2 281 149-433 233-685 (717)
12 PF05804 KAP: Kinesin-associat 99.8 7.6E-17 1.6E-21 170.7 25.1 257 164-433 264-521 (708)
13 PF05804 KAP: Kinesin-associat 99.8 1.1E-16 2.5E-21 169.4 24.5 285 149-445 290-577 (708)
14 KOG4199 Uncharacterized conser 99.7 3.5E-16 7.5E-21 147.3 22.7 270 160-435 118-406 (461)
15 KOG4199 Uncharacterized conser 99.7 9E-16 2E-20 144.5 23.0 276 152-432 148-444 (461)
16 smart00504 Ubox Modified RING 99.7 6.8E-18 1.5E-22 125.5 5.5 63 69-132 1-63 (63)
17 KOG1048 Neural adherens juncti 99.5 1E-13 2.2E-18 144.2 16.1 246 193-441 235-604 (717)
18 PF04826 Arm_2: Armadillo-like 99.5 7.5E-13 1.6E-17 125.2 18.8 197 188-390 9-207 (254)
19 PF04826 Arm_2: Armadillo-like 99.4 5.6E-12 1.2E-16 119.3 18.1 201 228-437 7-210 (254)
20 PF10508 Proteasom_PSMB: Prote 99.4 2.6E-10 5.7E-15 119.2 27.4 283 150-435 78-424 (503)
21 KOG2122 Beta-catenin-binding p 99.3 2.2E-11 4.8E-16 132.1 13.5 226 164-391 366-604 (2195)
22 PF15227 zf-C3HC4_4: zinc fing 99.3 2E-12 4.3E-17 87.0 3.2 39 72-110 1-42 (42)
23 cd00020 ARM Armadillo/beta-cat 99.2 1.2E-10 2.5E-15 97.3 12.4 116 271-388 3-120 (120)
24 cd00020 ARM Armadillo/beta-cat 99.2 2.9E-10 6.2E-15 94.9 14.3 117 312-431 2-119 (120)
25 KOG4500 Rho/Rac GTPase guanine 99.2 9.6E-10 2.1E-14 107.3 18.8 267 149-417 87-460 (604)
26 TIGR00599 rad18 DNA repair pro 99.2 3.3E-11 7.2E-16 119.5 6.2 71 65-136 22-92 (397)
27 PLN03208 E3 ubiquitin-protein 99.1 2.7E-11 5.8E-16 107.4 4.1 60 64-123 13-87 (193)
28 PF03224 V-ATPase_H_N: V-ATPas 99.1 5.1E-09 1.1E-13 103.2 20.3 250 171-422 32-304 (312)
29 KOG4500 Rho/Rac GTPase guanine 99.1 4.4E-09 9.4E-14 102.8 18.2 281 152-435 226-522 (604)
30 PF10508 Proteasom_PSMB: Prote 99.1 1.1E-08 2.5E-13 106.9 22.6 247 154-414 8-255 (503)
31 PF13923 zf-C3HC4_2: Zinc fing 99.0 4.1E-10 8.8E-15 74.8 2.9 38 72-110 1-39 (39)
32 KOG1222 Kinesin associated pro 99.0 4.8E-08 1.1E-12 96.7 18.2 257 151-414 306-602 (791)
33 PRK09687 putative lyase; Provi 98.9 1.4E-07 3.1E-12 91.1 20.6 227 151-428 25-278 (280)
34 PF11789 zf-Nse: Zinc-finger o 98.9 3.1E-10 6.7E-15 81.4 1.3 44 68-111 10-55 (57)
35 PF13445 zf-RING_UBOX: RING-ty 98.9 9.9E-10 2.1E-14 73.8 2.2 36 72-108 1-43 (43)
36 KOG0946 ER-Golgi vesicle-tethe 98.8 1.1E-06 2.3E-11 91.9 23.0 271 149-425 22-339 (970)
37 PF00097 zf-C3HC4: Zinc finger 98.8 4.3E-09 9.2E-14 70.7 3.3 39 72-110 1-41 (41)
38 KOG4642 Chaperone-dependent E3 98.7 8.2E-09 1.8E-13 93.9 4.3 75 63-137 205-279 (284)
39 PRK09687 putative lyase; Provi 98.7 4.8E-07 1E-11 87.5 16.9 198 193-431 25-249 (280)
40 KOG1222 Kinesin associated pro 98.7 1.9E-06 4.1E-11 85.6 20.8 256 151-414 262-559 (791)
41 PF14835 zf-RING_6: zf-RING of 98.7 3.7E-09 8E-14 75.9 1.4 57 70-129 8-65 (65)
42 cd00256 VATPase_H VATPase_H, r 98.7 1.1E-05 2.3E-10 81.8 26.0 242 191-433 53-309 (429)
43 PHA02929 N1R/p28-like protein; 98.7 1.4E-08 3E-13 94.2 4.5 50 65-115 170-227 (238)
44 cd00256 VATPase_H VATPase_H, r 98.7 3.4E-06 7.4E-11 85.3 21.8 281 151-434 103-428 (429)
45 PF03224 V-ATPase_H_N: V-ATPas 98.7 3.4E-07 7.4E-12 90.2 13.6 214 153-370 59-293 (312)
46 KOG2160 Armadillo/beta-catenin 98.7 9.3E-07 2E-11 85.6 15.8 183 205-388 96-282 (342)
47 KOG0823 Predicted E3 ubiquitin 98.6 1.5E-08 3.2E-13 91.7 3.2 57 67-123 45-103 (230)
48 PRK13800 putative oxidoreducta 98.6 4.2E-06 9.1E-11 93.8 22.9 224 150-430 622-865 (897)
49 KOG0287 Postreplication repair 98.6 1.1E-08 2.3E-13 96.5 1.9 65 69-134 23-87 (442)
50 PRK13800 putative oxidoreducta 98.6 4.5E-06 9.8E-11 93.6 23.1 227 149-428 652-895 (897)
51 KOG2160 Armadillo/beta-catenin 98.6 5.7E-06 1.2E-10 80.2 19.5 186 160-347 94-283 (342)
52 KOG0168 Putative ubiquitin fus 98.6 3.7E-06 8.1E-11 88.6 19.2 258 149-414 167-438 (1051)
53 PF13920 zf-C3HC4_3: Zinc fing 98.6 3.6E-08 7.9E-13 69.2 2.9 46 69-115 2-48 (50)
54 PF13639 zf-RING_2: Ring finge 98.6 2.2E-08 4.7E-13 68.4 1.5 40 71-111 2-44 (44)
55 cd00162 RING RING-finger (Real 98.5 8.8E-08 1.9E-12 65.2 3.7 43 71-113 1-44 (45)
56 KOG0320 Predicted E3 ubiquitin 98.5 4.3E-08 9.2E-13 84.8 2.4 51 69-120 131-183 (187)
57 KOG4646 Uncharacterized conser 98.5 2E-06 4.2E-11 71.8 11.1 154 273-429 14-167 (173)
58 KOG0168 Putative ubiquitin fus 98.5 4.4E-06 9.5E-11 88.1 15.9 212 195-411 171-389 (1051)
59 KOG0317 Predicted E3 ubiquitin 98.4 1.3E-07 2.8E-12 88.2 3.2 55 65-120 234-289 (293)
60 COG5432 RAD18 RING-finger-cont 98.4 1.2E-07 2.6E-12 87.7 2.9 66 69-135 25-90 (391)
61 KOG2177 Predicted E3 ubiquitin 98.4 1.5E-07 3.3E-12 92.2 3.6 69 65-136 9-77 (386)
62 smart00184 RING Ring finger. E 98.4 2.7E-07 5.8E-12 60.5 3.6 39 72-110 1-39 (39)
63 KOG2042 Ubiquitin fusion degra 98.4 3.8E-07 8.3E-12 98.3 6.0 74 63-137 864-938 (943)
64 PHA02926 zinc finger-like prot 98.3 4.4E-07 9.5E-12 81.6 3.9 69 53-123 153-236 (242)
65 PF01602 Adaptin_N: Adaptin N 98.3 3.1E-05 6.8E-10 81.8 18.8 254 151-434 116-371 (526)
66 PF01602 Adaptin_N: Adaptin N 98.3 5E-05 1.1E-09 80.2 19.9 281 120-433 53-334 (526)
67 KOG1293 Proteins containing ar 98.3 7.5E-05 1.6E-09 77.2 19.9 118 316-435 418-536 (678)
68 TIGR00570 cdk7 CDK-activating 98.3 1E-06 2.2E-11 84.3 5.9 60 68-127 2-70 (309)
69 COG5113 UFD2 Ubiquitin fusion 98.2 1.6E-06 3.4E-11 88.4 6.3 74 63-137 848-922 (929)
70 KOG0311 Predicted E3 ubiquitin 98.2 2.2E-07 4.8E-12 88.6 -1.3 70 65-134 39-110 (381)
71 KOG2171 Karyopherin (importin) 98.2 0.00034 7.4E-09 76.7 22.6 280 149-436 155-508 (1075)
72 PF00514 Arm: Armadillo/beta-c 98.1 4.4E-06 9.6E-11 55.9 4.9 41 306-346 1-41 (41)
73 KOG4646 Uncharacterized conser 98.1 3.1E-05 6.7E-10 64.8 10.8 132 233-371 16-149 (173)
74 PF14634 zf-RING_5: zinc-RING 98.1 2.4E-06 5.2E-11 58.1 3.2 41 71-112 1-44 (44)
75 PF05536 Neurochondrin: Neuroc 98.1 0.00036 7.7E-09 73.7 20.0 246 149-432 5-261 (543)
76 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00041 8.8E-09 69.7 19.4 250 171-429 5-266 (371)
77 KOG1789 Endocytosis protein RM 98.0 0.00022 4.8E-09 77.0 17.3 244 166-413 1742-2141(2235)
78 KOG2164 Predicted E3 ubiquitin 98.0 4E-06 8.6E-11 84.2 3.6 87 52-138 169-263 (513)
79 COG5574 PEX10 RING-finger-cont 98.0 3.1E-06 6.6E-11 78.1 2.3 51 68-118 214-265 (271)
80 PTZ00429 beta-adaptin; Provisi 98.0 0.0027 5.8E-08 69.2 24.6 264 146-434 65-328 (746)
81 KOG2660 Locus-specific chromos 98.0 4.1E-06 8.8E-11 79.7 2.6 67 65-132 11-82 (331)
82 KOG3678 SARM protein (with ste 98.0 0.00046 1E-08 68.8 16.8 265 149-433 180-453 (832)
83 COG5222 Uncharacterized conser 97.9 1.2E-05 2.6E-10 74.9 4.7 66 70-135 275-342 (427)
84 KOG2759 Vacuolar H+-ATPase V1 97.9 0.0023 4.9E-08 63.4 20.3 275 153-434 118-441 (442)
85 KOG2759 Vacuolar H+-ATPase V1 97.9 0.00054 1.2E-08 67.7 15.7 229 157-388 164-438 (442)
86 KOG2973 Uncharacterized conser 97.9 0.0028 6E-08 60.5 19.8 271 151-432 5-315 (353)
87 PF12678 zf-rbx1: RING-H2 zinc 97.9 1.1E-05 2.3E-10 61.4 3.1 39 72-111 22-73 (73)
88 PF05536 Neurochondrin: Neuroc 97.9 0.00033 7.1E-09 73.9 15.2 154 233-391 5-171 (543)
89 KOG2734 Uncharacterized conser 97.9 0.0014 3.1E-08 65.1 18.2 265 123-390 99-402 (536)
90 KOG0946 ER-Golgi vesicle-tethe 97.8 0.00038 8.3E-09 73.4 14.9 197 233-434 22-244 (970)
91 KOG3678 SARM protein (with ste 97.8 0.00025 5.4E-09 70.7 12.8 160 227-390 174-338 (832)
92 KOG0297 TNF receptor-associate 97.8 1.2E-05 2.5E-10 81.3 3.6 69 65-134 17-87 (391)
93 PF00514 Arm: Armadillo/beta-c 97.8 3E-05 6.4E-10 51.8 4.4 41 347-388 1-41 (41)
94 KOG1293 Proteins containing ar 97.8 0.00021 4.5E-09 74.1 12.4 145 244-391 388-536 (678)
95 PTZ00429 beta-adaptin; Provisi 97.8 0.0042 9.1E-08 67.7 23.0 251 149-429 32-282 (746)
96 KOG2171 Karyopherin (importin) 97.8 0.00066 1.4E-08 74.5 16.5 232 152-388 351-594 (1075)
97 KOG2973 Uncharacterized conser 97.8 0.00064 1.4E-08 64.7 14.1 193 235-435 5-207 (353)
98 KOG4159 Predicted E3 ubiquitin 97.8 1.8E-05 3.8E-10 79.1 3.7 71 64-135 79-154 (398)
99 KOG0978 E3 ubiquitin ligase in 97.7 1.4E-05 3.1E-10 84.1 1.7 54 68-121 642-695 (698)
100 PF14664 RICTOR_N: Rapamycin-i 97.6 0.018 3.9E-07 57.9 22.5 273 151-429 27-361 (371)
101 KOG0289 mRNA splicing factor [ 97.6 0.00018 3.9E-09 70.8 7.8 51 70-121 1-52 (506)
102 PF12348 CLASP_N: CLASP N term 97.6 0.00072 1.6E-08 63.3 11.1 186 243-436 17-210 (228)
103 KOG2734 Uncharacterized conser 97.5 0.06 1.3E-06 53.9 24.0 238 168-409 103-368 (536)
104 KOG4413 26S proteasome regulat 97.5 0.043 9.3E-07 52.9 21.6 269 162-433 95-378 (524)
105 smart00185 ARM Armadillo/beta- 97.4 0.00035 7.6E-09 46.2 5.1 40 307-346 2-41 (41)
106 KOG1242 Protein containing ada 97.4 0.019 4E-07 59.7 19.8 270 151-432 136-445 (569)
107 KOG1517 Guanine nucleotide bin 97.4 0.0077 1.7E-07 65.7 17.2 223 166-390 487-734 (1387)
108 TIGR02270 conserved hypothetic 97.4 0.014 3.1E-07 59.4 18.5 152 150-346 55-207 (410)
109 KOG0824 Predicted E3 ubiquitin 97.3 0.0001 2.2E-09 69.3 2.1 48 70-117 8-55 (324)
110 PF13646 HEAT_2: HEAT repeats; 97.3 0.00088 1.9E-08 52.4 6.5 87 193-300 1-87 (88)
111 PF13646 HEAT_2: HEAT repeats; 97.2 0.002 4.3E-08 50.4 8.3 86 235-342 1-88 (88)
112 PF12861 zf-Apc11: Anaphase-pr 97.2 0.00036 7.7E-09 53.8 3.8 46 70-115 33-82 (85)
113 COG5152 Uncharacterized conser 97.2 0.00013 2.9E-09 64.2 1.5 44 70-114 197-240 (259)
114 PF12348 CLASP_N: CLASP N term 97.2 0.0015 3.3E-08 61.0 8.8 181 159-347 17-207 (228)
115 KOG1813 Predicted E3 ubiquitin 97.2 0.00023 4.9E-09 66.9 3.0 47 65-114 239-285 (313)
116 PF11841 DUF3361: Domain of un 97.2 0.0047 1E-07 53.9 10.6 128 272-399 8-142 (160)
117 PF04641 Rtf2: Rtf2 RING-finge 97.2 0.00042 9.1E-09 66.3 4.3 53 66-120 110-166 (260)
118 PF10165 Ric8: Guanine nucleot 97.1 0.017 3.6E-07 59.8 16.0 261 170-433 2-338 (446)
119 COG5243 HRD1 HRD ubiquitin lig 97.1 0.00031 6.7E-09 67.7 2.9 65 49-114 266-344 (491)
120 PF10165 Ric8: Guanine nucleot 97.1 0.083 1.8E-06 54.7 20.5 229 161-392 44-341 (446)
121 KOG0802 E3 ubiquitin ligase [P 97.0 0.00026 5.6E-09 75.0 1.7 46 68-114 290-340 (543)
122 smart00185 ARM Armadillo/beta- 97.0 0.001 2.2E-08 43.9 4.0 39 223-261 2-40 (41)
123 TIGR02270 conserved hypothetic 97.0 0.022 4.8E-07 58.0 15.1 151 192-386 55-205 (410)
124 KOG4628 Predicted E3 ubiquitin 97.0 0.00047 1E-08 67.3 2.8 46 70-115 230-278 (348)
125 KOG3039 Uncharacterized conser 96.9 0.00079 1.7E-08 61.5 3.2 54 67-121 219-276 (303)
126 KOG1059 Vesicle coat complex A 96.8 0.26 5.7E-06 52.3 21.5 192 147-356 179-374 (877)
127 PF09759 Atx10homo_assoc: Spin 96.8 0.0063 1.4E-07 49.1 7.8 64 293-356 3-70 (102)
128 KOG1002 Nucleotide excision re 96.8 0.00054 1.2E-08 68.9 1.9 50 68-117 535-588 (791)
129 KOG2879 Predicted E3 ubiquitin 96.8 0.00094 2E-08 62.1 3.3 48 68-115 238-287 (298)
130 KOG3039 Uncharacterized conser 96.8 0.00098 2.1E-08 60.9 3.0 43 60-102 34-76 (303)
131 KOG2979 Protein involved in DN 96.8 0.0015 3.2E-08 60.5 4.1 53 61-113 168-222 (262)
132 COG1413 FOG: HEAT repeat [Ener 96.6 0.38 8.2E-06 47.7 20.9 189 149-385 43-239 (335)
133 KOG4413 26S proteasome regulat 96.6 0.34 7.3E-06 47.0 19.0 244 164-410 186-460 (524)
134 KOG2817 Predicted E3 ubiquitin 96.6 0.0014 3.1E-08 64.3 3.1 44 68-111 333-381 (394)
135 KOG2259 Uncharacterized conser 96.6 0.0087 1.9E-07 62.4 8.5 253 151-429 200-472 (823)
136 COG5369 Uncharacterized conser 96.6 0.011 2.3E-07 60.4 8.9 186 167-355 407-603 (743)
137 KOG3113 Uncharacterized conser 96.5 0.0019 4.2E-08 59.3 3.2 50 68-120 110-163 (293)
138 COG5540 RING-finger-containing 96.5 0.0017 3.7E-08 61.2 2.5 47 70-116 324-373 (374)
139 KOG0213 Splicing factor 3b, su 96.5 0.94 2E-05 48.5 22.5 233 151-390 801-1067(1172)
140 PF11841 DUF3361: Domain of un 96.4 0.08 1.7E-06 46.3 12.2 128 228-356 6-143 (160)
141 COG1413 FOG: HEAT repeat [Ener 96.4 0.26 5.6E-06 48.8 17.9 155 192-389 44-210 (335)
142 KOG2023 Nuclear transport rece 96.3 0.18 3.9E-06 53.1 16.0 271 150-434 175-507 (885)
143 PF13513 HEAT_EZ: HEAT-like re 96.3 0.0052 1.1E-07 43.6 3.7 54 291-344 2-55 (55)
144 KOG1241 Karyopherin (importin) 96.3 0.22 4.8E-06 53.1 16.7 260 161-433 186-478 (859)
145 KOG0212 Uncharacterized conser 96.3 0.12 2.6E-06 53.3 14.3 230 151-388 210-444 (675)
146 KOG1789 Endocytosis protein RM 96.2 0.078 1.7E-06 58.2 13.5 138 249-388 1741-1883(2235)
147 KOG0804 Cytoplasmic Zn-finger 96.2 0.0021 4.5E-08 63.8 1.5 47 65-114 171-221 (493)
148 KOG0826 Predicted E3 ubiquitin 96.2 0.003 6.5E-08 60.3 2.5 49 65-114 296-345 (357)
149 COG5181 HSH155 U2 snRNP splice 96.1 0.64 1.4E-05 48.7 18.9 231 151-391 606-873 (975)
150 COG5369 Uncharacterized conser 96.0 0.12 2.5E-06 53.2 12.6 184 225-411 423-617 (743)
151 KOG1061 Vesicle coat complex A 95.9 0.34 7.3E-06 51.9 16.4 269 150-437 122-420 (734)
152 KOG4367 Predicted Zn-finger pr 95.9 0.0029 6.3E-08 62.3 1.1 35 67-101 2-36 (699)
153 PF13764 E3_UbLigase_R4: E3 ub 95.9 0.62 1.3E-05 51.3 18.7 246 185-435 111-409 (802)
154 KOG3036 Protein involved in ce 95.8 0.45 9.8E-06 44.3 14.8 150 165-315 95-257 (293)
155 KOG3036 Protein involved in ce 95.8 0.9 1.9E-05 42.4 16.6 153 291-444 94-259 (293)
156 KOG1242 Protein containing ada 95.7 0.38 8.3E-06 50.2 15.6 226 193-436 98-328 (569)
157 COG5240 SEC21 Vesicle coat com 95.7 1.4 2.9E-05 46.0 19.0 249 171-433 249-556 (898)
158 KOG0212 Uncharacterized conser 95.7 0.29 6.2E-06 50.6 14.1 222 205-435 180-409 (675)
159 PF08045 CDC14: Cell division 95.6 0.085 1.8E-06 49.9 9.5 97 165-261 107-206 (257)
160 KOG0213 Splicing factor 3b, su 95.5 0.081 1.7E-06 56.2 9.8 112 233-347 799-913 (1172)
161 KOG1059 Vesicle coat complex A 95.5 2.9 6.3E-05 44.8 20.7 253 150-433 145-403 (877)
162 COG5109 Uncharacterized conser 95.4 0.0089 1.9E-07 56.7 2.3 45 68-112 335-384 (396)
163 PF06371 Drf_GBD: Diaphanous G 95.4 0.053 1.1E-06 48.9 7.2 79 309-387 99-186 (187)
164 PF05004 IFRD: Interferon-rela 95.3 1.8 3.9E-05 42.6 18.3 191 151-345 45-256 (309)
165 KOG1517 Guanine nucleotide bin 95.3 0.36 7.8E-06 53.3 14.0 204 230-436 509-736 (1387)
166 KOG1645 RING-finger-containing 95.3 0.0091 2E-07 58.7 1.9 59 70-128 5-69 (463)
167 KOG1062 Vesicle coat complex A 95.3 4.9 0.00011 43.6 21.9 254 149-414 142-453 (866)
168 PF02891 zf-MIZ: MIZ/SP-RING z 95.2 0.021 4.6E-07 39.8 3.2 45 69-113 2-50 (50)
169 KOG1241 Karyopherin (importin) 95.2 0.51 1.1E-05 50.5 14.5 232 155-394 265-536 (859)
170 KOG1734 Predicted RING-contain 95.2 0.0083 1.8E-07 55.7 1.3 54 69-122 224-288 (328)
171 KOG2999 Regulator of Rac1, req 95.2 0.25 5.4E-06 50.9 11.8 164 235-400 85-254 (713)
172 PF13513 HEAT_EZ: HEAT-like re 95.1 0.026 5.7E-07 39.9 3.6 54 207-260 2-55 (55)
173 KOG2259 Uncharacterized conser 95.1 0.18 4E-06 52.9 10.9 111 224-345 364-474 (823)
174 KOG2023 Nuclear transport rece 95.1 0.26 5.5E-06 52.0 11.7 172 192-368 129-308 (885)
175 KOG1062 Vesicle coat complex A 95.0 3.9 8.5E-05 44.3 20.4 213 205-450 120-342 (866)
176 COG5231 VMA13 Vacuolar H+-ATPa 95.0 0.5 1.1E-05 45.7 12.4 222 207-430 164-426 (432)
177 COG5181 HSH155 U2 snRNP splice 94.9 0.23 4.9E-06 51.9 10.7 237 193-436 606-874 (975)
178 PF09759 Atx10homo_assoc: Spin 94.9 0.14 3.1E-06 41.3 7.6 60 333-393 2-64 (102)
179 PF08569 Mo25: Mo25-like; Int 94.9 4.3 9.3E-05 40.3 19.5 208 229-440 72-291 (335)
180 KOG3800 Predicted E3 ubiquitin 94.9 0.02 4.3E-07 54.0 2.8 46 71-116 2-52 (300)
181 PF04078 Rcd1: Cell differenti 94.8 1 2.3E-05 42.5 14.1 174 165-344 66-260 (262)
182 PF07814 WAPL: Wings apart-lik 94.8 1.3 2.9E-05 44.5 16.1 237 149-394 21-305 (361)
183 PF04078 Rcd1: Cell differenti 94.8 0.41 8.9E-06 45.2 11.4 193 245-442 7-228 (262)
184 PF08045 CDC14: Cell division 94.8 0.46 1E-05 45.0 11.7 95 293-388 108-207 (257)
185 COG5194 APC11 Component of SCF 94.6 0.035 7.5E-07 41.8 2.9 44 70-114 32-80 (88)
186 PF04063 DUF383: Domain of unk 94.3 0.58 1.3E-05 42.5 11.0 83 274-356 51-142 (192)
187 PF04063 DUF383: Domain of unk 94.3 0.3 6.6E-06 44.4 9.0 110 327-439 5-139 (192)
188 smart00744 RINGv The RING-vari 94.3 0.057 1.2E-06 37.4 3.3 41 71-111 1-49 (49)
189 PF14668 RICTOR_V: Rapamycin-i 94.3 0.22 4.8E-06 37.6 6.7 64 293-356 4-68 (73)
190 PF14570 zf-RING_4: RING/Ubox 94.2 0.043 9.4E-07 37.6 2.6 43 72-114 1-47 (48)
191 COG5096 Vesicle coat complex, 94.1 2.1 4.7E-05 46.6 16.2 100 319-430 94-193 (757)
192 PF13764 E3_UbLigase_R4: E3 ub 94.0 11 0.00023 41.9 21.7 219 149-372 117-388 (802)
193 KOG4151 Myosin assembly protei 94.0 1.1 2.4E-05 48.3 13.7 217 182-407 495-717 (748)
194 KOG0828 Predicted E3 ubiquitin 93.8 0.033 7.2E-07 56.0 2.0 51 66-116 568-635 (636)
195 COG5096 Vesicle coat complex, 93.8 2.2 4.8E-05 46.5 15.8 140 149-304 55-194 (757)
196 PF12755 Vac14_Fab1_bd: Vacuol 93.8 0.46 1E-05 38.1 8.2 92 335-431 4-96 (97)
197 KOG1061 Vesicle coat complex A 93.7 0.68 1.5E-05 49.7 11.4 145 145-305 45-189 (734)
198 PF06025 DUF913: Domain of Unk 93.6 3.6 7.8E-05 41.7 16.2 130 227-356 99-243 (379)
199 PF11698 V-ATPase_H_C: V-ATPas 93.5 0.38 8.2E-06 40.0 7.4 70 149-219 43-113 (119)
200 KOG4151 Myosin assembly protei 93.3 1.9 4E-05 46.6 14.0 196 220-424 491-691 (748)
201 KOG1493 Anaphase-promoting com 93.3 0.028 6.2E-07 41.9 0.4 50 66-115 28-81 (84)
202 PF12530 DUF3730: Protein of u 93.1 7.8 0.00017 36.4 17.0 139 193-346 2-151 (234)
203 KOG1077 Vesicle coat complex A 93.1 15 0.00032 39.6 20.0 69 319-390 331-400 (938)
204 KOG1039 Predicted E3 ubiquitin 93.0 0.073 1.6E-06 52.5 2.9 48 67-114 159-220 (344)
205 KOG1943 Beta-tubulin folding c 92.7 6.4 0.00014 44.1 17.2 235 149-414 341-594 (1133)
206 PF11698 V-ATPase_H_C: V-ATPas 92.7 0.19 4E-06 41.8 4.4 71 275-345 43-114 (119)
207 KOG2611 Neurochondrin/leucine- 92.7 12 0.00026 38.5 17.7 175 206-386 25-223 (698)
208 PF06371 Drf_GBD: Diaphanous G 92.7 1.7 3.7E-05 39.0 11.3 110 150-261 67-186 (187)
209 KOG1248 Uncharacterized conser 92.7 16 0.00034 41.6 20.2 218 205-433 667-899 (1176)
210 PF11701 UNC45-central: Myosin 92.7 1.1 2.5E-05 39.3 9.7 145 233-384 3-155 (157)
211 KOG1824 TATA-binding protein-i 92.4 5.3 0.00011 44.2 15.8 266 153-433 9-287 (1233)
212 KOG1001 Helicase-like transcri 92.4 0.027 5.8E-07 60.8 -1.2 46 70-116 455-501 (674)
213 KOG0827 Predicted E3 ubiquitin 92.2 0.11 2.4E-06 51.0 2.8 53 67-119 2-60 (465)
214 PF11793 FANCL_C: FANCL C-term 91.8 0.052 1.1E-06 40.7 0.2 47 69-115 2-66 (70)
215 PF12755 Vac14_Fab1_bd: Vacuol 91.8 0.84 1.8E-05 36.6 7.2 91 293-386 3-94 (97)
216 KOG1078 Vesicle coat complex C 91.6 15 0.00033 39.9 18.0 54 372-432 479-532 (865)
217 KOG1058 Vesicle coat complex C 91.6 12 0.00027 40.4 17.2 184 149-347 134-347 (948)
218 COG5215 KAP95 Karyopherin (imp 91.6 5.7 0.00012 41.6 14.3 220 162-390 191-439 (858)
219 KOG1785 Tyrosine kinase negati 91.5 0.082 1.8E-06 51.9 1.2 47 71-117 371-418 (563)
220 KOG4185 Predicted E3 ubiquitin 91.3 0.21 4.6E-06 48.7 3.9 63 70-132 4-77 (296)
221 COG5175 MOT2 Transcriptional r 91.1 0.14 3E-06 49.3 2.2 50 68-118 14-67 (480)
222 KOG0883 Cyclophilin type, U bo 90.8 0.18 3.8E-06 49.6 2.7 50 69-119 40-89 (518)
223 KOG0825 PHD Zn-finger protein 90.6 0.045 9.7E-07 58.1 -1.6 46 70-116 124-172 (1134)
224 PF12717 Cnd1: non-SMC mitotic 90.6 6.8 0.00015 35.0 12.7 111 246-370 1-112 (178)
225 KOG1248 Uncharacterized conser 90.5 7.1 0.00015 44.2 14.8 222 161-390 666-900 (1176)
226 KOG4172 Predicted E3 ubiquitin 90.4 0.052 1.1E-06 37.7 -0.9 44 71-114 9-53 (62)
227 PF08324 PUL: PUL domain; Int 90.4 3.4 7.3E-05 39.5 11.2 174 193-368 65-252 (268)
228 PF05004 IFRD: Interferon-rela 90.3 20 0.00043 35.3 16.8 191 235-433 45-258 (309)
229 COG5231 VMA13 Vacuolar H+-ATPa 90.2 13 0.00027 36.4 14.4 219 165-387 165-427 (432)
230 PF14569 zf-UDP: Zinc-binding 90.0 0.36 7.9E-06 36.3 3.1 47 70-116 10-63 (80)
231 PF07814 WAPL: Wings apart-lik 89.9 22 0.00048 35.7 17.0 234 193-434 23-301 (361)
232 PF12031 DUF3518: Domain of un 89.7 1.1 2.5E-05 41.7 6.8 83 331-414 138-228 (257)
233 KOG1240 Protein kinase contain 89.4 17 0.00038 41.5 16.6 240 187-435 415-728 (1431)
234 PF12717 Cnd1: non-SMC mitotic 89.4 15 0.00033 32.7 15.8 110 163-286 2-112 (178)
235 PF08569 Mo25: Mo25-like; Int 89.3 6.8 0.00015 38.9 12.5 198 150-349 77-286 (335)
236 PF02985 HEAT: HEAT repeat; I 89.3 0.76 1.6E-05 28.2 3.8 28 235-262 2-29 (31)
237 PF08167 RIX1: rRNA processing 89.2 3 6.6E-05 36.9 9.2 108 234-345 26-142 (165)
238 COG5215 KAP95 Karyopherin (imp 88.9 34 0.00074 36.1 17.8 278 147-443 131-446 (858)
239 KOG4692 Predicted E3 ubiquitin 88.9 0.34 7.4E-06 47.0 2.9 49 65-114 416-466 (489)
240 PF12719 Cnd3: Nuclear condens 88.8 19 0.00041 35.1 15.3 161 156-328 34-208 (298)
241 PF02985 HEAT: HEAT repeat; I 88.6 0.5 1.1E-05 29.1 2.7 28 319-346 2-29 (31)
242 KOG3665 ZYG-1-like serine/thre 88.5 4.2 9.1E-05 44.6 11.4 170 172-341 494-692 (699)
243 PF11701 UNC45-central: Myosin 88.3 4.9 0.00011 35.2 9.8 131 289-425 18-152 (157)
244 KOG2999 Regulator of Rac1, req 88.3 13 0.00029 38.8 13.8 151 194-346 86-242 (713)
245 cd03569 VHS_Hrs_Vps27p VHS dom 87.9 3.5 7.5E-05 35.6 8.3 77 360-436 42-118 (142)
246 KOG1240 Protein kinase contain 87.8 13 0.00028 42.4 14.3 232 151-390 424-727 (1431)
247 COG5627 MMS21 DNA repair prote 87.8 0.46 9.9E-06 43.6 2.9 57 69-125 189-249 (275)
248 PF12460 MMS19_C: RNAPII trans 87.8 23 0.0005 36.3 15.9 112 234-348 272-396 (415)
249 KOG2274 Predicted importin 9 [ 87.6 12 0.00026 41.4 13.6 178 246-430 504-687 (1005)
250 COG5219 Uncharacterized conser 87.5 0.26 5.6E-06 53.7 1.3 51 65-115 1465-1523(1525)
251 COG5209 RCD1 Uncharacterized p 87.3 2.3 4.9E-05 39.3 7.0 96 332-429 115-215 (315)
252 KOG1788 Uncharacterized conser 87.3 11 0.00023 42.5 13.0 253 170-431 663-981 (2799)
253 cd03568 VHS_STAM VHS domain fa 87.2 3.8 8.2E-05 35.4 8.2 77 360-436 38-114 (144)
254 PF06025 DUF913: Domain of Unk 87.1 36 0.00079 34.4 18.4 82 164-245 124-208 (379)
255 PLN02195 cellulose synthase A 86.9 0.55 1.2E-05 52.1 3.4 45 71-115 8-59 (977)
256 COG5240 SEC21 Vesicle coat com 86.8 27 0.00058 36.9 15.0 25 363-387 530-554 (898)
257 KOG1824 TATA-binding protein-i 86.7 49 0.0011 37.1 17.5 228 149-393 47-291 (1233)
258 PF14447 Prok-RING_4: Prokaryo 86.6 0.47 1E-05 33.4 1.8 46 70-118 8-53 (55)
259 KOG4535 HEAT and armadillo rep 86.6 1.4 3E-05 45.1 5.7 181 208-388 407-603 (728)
260 PF04641 Rtf2: Rtf2 RING-finge 86.5 0.81 1.7E-05 43.8 4.0 35 69-103 34-69 (260)
261 KOG2930 SCF ubiquitin ligase, 86.3 0.48 1E-05 37.6 1.9 27 86-113 80-106 (114)
262 PLN02189 cellulose synthase 86.2 0.5 1.1E-05 52.8 2.7 46 70-115 35-87 (1040)
263 KOG1060 Vesicle coat complex A 86.0 24 0.00052 38.6 14.6 90 289-388 156-246 (968)
264 KOG0396 Uncharacterized conser 85.9 0.53 1.2E-05 46.2 2.4 49 68-116 329-380 (389)
265 PF05290 Baculo_IE-1: Baculovi 85.5 1 2.2E-05 37.7 3.6 50 68-117 79-134 (140)
266 KOG2611 Neurochondrin/leucine- 85.3 30 0.00066 35.7 14.3 129 153-284 15-161 (698)
267 KOG0211 Protein phosphatase 2A 85.3 31 0.00068 38.1 15.7 262 152-430 358-623 (759)
268 KOG1060 Vesicle coat complex A 85.2 64 0.0014 35.4 18.5 63 237-305 147-209 (968)
269 KOG3161 Predicted E3 ubiquitin 84.4 0.38 8.2E-06 50.3 0.7 57 69-129 11-76 (861)
270 KOG1077 Vesicle coat complex A 84.3 67 0.0015 34.9 18.4 93 276-378 330-423 (938)
271 cd03561 VHS VHS domain family; 84.2 7 0.00015 33.1 8.4 77 360-436 38-116 (133)
272 PLN02638 cellulose synthase A 83.4 0.77 1.7E-05 51.5 2.6 45 71-115 19-70 (1079)
273 PLN02436 cellulose synthase A 83.4 0.77 1.7E-05 51.4 2.6 46 70-115 37-89 (1094)
274 KOG1571 Predicted E3 ubiquitin 83.4 0.55 1.2E-05 46.0 1.3 46 65-114 301-346 (355)
275 KOG0301 Phospholipase A2-activ 83.3 18 0.00039 38.6 12.2 166 198-371 551-728 (745)
276 PF12460 MMS19_C: RNAPII trans 83.1 59 0.0013 33.3 17.0 186 234-433 190-395 (415)
277 KOG0298 DEAD box-containing he 83.0 0.27 5.8E-06 55.4 -1.1 46 65-111 1149-1195(1394)
278 PF14726 RTTN_N: Rotatin, an a 82.8 21 0.00045 28.7 9.9 72 270-342 25-96 (98)
279 PF00790 VHS: VHS domain; Int 82.7 6.9 0.00015 33.5 7.8 77 360-436 43-122 (140)
280 KOG4653 Uncharacterized conser 82.6 61 0.0013 36.0 16.0 210 208-430 743-962 (982)
281 cd03567 VHS_GGA VHS domain fam 82.1 7.9 0.00017 33.2 7.8 78 360-437 39-121 (139)
282 KOG1058 Vesicle coat complex C 82.1 84 0.0018 34.4 20.2 58 162-225 219-276 (948)
283 PF05918 API5: Apoptosis inhib 81.9 35 0.00075 36.3 13.8 121 161-301 34-158 (556)
284 KOG2062 26S proteasome regulat 81.4 58 0.0013 35.5 15.1 158 232-414 518-677 (929)
285 smart00288 VHS Domain present 80.9 10 0.00022 32.2 8.0 76 360-435 38-114 (133)
286 KOG4265 Predicted E3 ubiquitin 80.8 1.1 2.3E-05 44.0 2.2 45 70-115 291-336 (349)
287 PF05918 API5: Apoptosis inhib 80.7 5.8 0.00013 41.9 7.7 119 289-428 35-158 (556)
288 KOG2114 Vacuolar assembly/sort 79.9 1.4 3.1E-05 47.8 2.9 43 66-112 837-880 (933)
289 KOG4535 HEAT and armadillo rep 79.8 2 4.4E-05 43.8 3.9 166 263-431 421-602 (728)
290 KOG3665 ZYG-1-like serine/thre 79.5 66 0.0014 35.5 15.6 90 299-389 494-588 (699)
291 KOG4362 Transcriptional regula 78.2 0.75 1.6E-05 49.1 0.3 65 68-132 20-86 (684)
292 PF12031 DUF3518: Domain of un 78.1 7.4 0.00016 36.5 6.6 82 206-287 138-228 (257)
293 PF11865 DUF3385: Domain of un 78.1 10 0.00023 33.3 7.5 143 193-344 12-155 (160)
294 KOG2956 CLIP-associating prote 78.0 90 0.0019 32.3 15.5 182 151-345 288-476 (516)
295 KOG2025 Chromosome condensatio 77.9 7.2 0.00016 41.9 7.3 103 316-425 84-186 (892)
296 PLN02915 cellulose synthase A 77.9 1.5 3.2E-05 49.2 2.5 46 70-115 16-68 (1044)
297 KOG1940 Zn-finger protein [Gen 77.5 1.4 3E-05 42.2 1.8 43 69-112 158-204 (276)
298 KOG3002 Zn finger protein [Gen 77.3 2.8 6.1E-05 40.8 3.9 59 67-132 46-105 (299)
299 PLN02400 cellulose synthase 76.6 1.3 2.8E-05 49.8 1.5 46 70-115 37-89 (1085)
300 PRK06266 transcription initiat 76.3 5.2 0.00011 35.9 5.1 37 64-116 112-148 (178)
301 KOG1788 Uncharacterized conser 75.8 58 0.0013 37.1 13.3 81 308-389 899-983 (2799)
302 PF12719 Cnd3: Nuclear condens 75.7 68 0.0015 31.2 13.3 170 233-414 26-209 (298)
303 smart00531 TFIIE Transcription 75.7 3.1 6.8E-05 36.1 3.4 42 63-116 93-135 (147)
304 KOG2062 26S proteasome regulat 75.5 52 0.0011 35.9 12.7 94 318-429 555-650 (929)
305 COG5218 YCG1 Chromosome conden 75.5 1.1E+02 0.0024 32.7 14.7 101 316-423 90-190 (885)
306 PF11707 Npa1: Ribosome 60S bi 75.4 89 0.0019 30.9 16.0 160 193-354 58-245 (330)
307 KOG2274 Predicted importin 9 [ 75.1 1.5E+02 0.0032 33.3 17.2 190 197-394 496-695 (1005)
308 TIGR00373 conserved hypothetic 74.5 3.6 7.8E-05 36.2 3.5 38 64-117 104-141 (158)
309 COG5209 RCD1 Uncharacterized p 74.1 35 0.00075 31.8 9.7 98 292-390 116-220 (315)
310 PF14353 CpXC: CpXC protein 73.8 1.9 4.1E-05 36.3 1.6 46 69-114 1-48 (128)
311 KOG1967 DNA repair/transcripti 73.8 34 0.00074 38.1 11.1 146 233-382 867-1018(1030)
312 PF06416 DUF1076: Protein of u 73.7 2.4 5.3E-05 34.3 2.0 52 67-119 38-95 (113)
313 KOG1820 Microtubule-associated 73.7 40 0.00087 37.6 12.0 182 153-346 257-443 (815)
314 KOG1020 Sister chromatid cohes 73.3 1.7E+02 0.0037 34.8 16.8 108 233-350 816-925 (1692)
315 COG2176 PolC DNA polymerase II 72.9 3 6.5E-05 47.2 3.1 41 64-116 909-951 (1444)
316 PF08324 PUL: PUL domain; Int 72.8 21 0.00045 34.0 8.7 137 289-426 123-268 (268)
317 COG5220 TFB3 Cdk activating ki 72.5 1.5 3.2E-05 40.4 0.6 44 69-112 10-61 (314)
318 COG1675 TFA1 Transcription ini 72.0 9.5 0.00021 34.0 5.6 55 64-134 108-163 (176)
319 PF14446 Prok-RING_1: Prokaryo 71.8 3.6 7.8E-05 29.0 2.3 28 70-97 6-37 (54)
320 PRK14707 hypothetical protein; 71.7 2.6E+02 0.0057 34.7 21.5 212 151-371 375-595 (2710)
321 cd03569 VHS_Hrs_Vps27p VHS dom 71.7 22 0.00048 30.5 7.8 72 149-220 41-113 (142)
322 KOG1820 Microtubule-associated 71.5 80 0.0017 35.3 13.6 174 244-427 264-438 (815)
323 PF14668 RICTOR_V: Rapamycin-i 71.4 24 0.00052 26.6 6.8 67 250-317 4-70 (73)
324 KOG2025 Chromosome condensatio 71.4 1.5E+02 0.0033 32.4 14.8 113 193-315 87-200 (892)
325 KOG0567 HEAT repeat-containing 71.1 99 0.0021 29.6 15.0 198 191-432 67-280 (289)
326 PF08167 RIX1: rRNA processing 70.8 57 0.0012 28.7 10.4 107 151-261 27-142 (165)
327 KOG1814 Predicted E3 ubiquitin 70.6 4.9 0.00011 40.2 3.7 61 65-129 180-250 (445)
328 PF10363 DUF2435: Protein of u 70.3 13 0.00029 29.4 5.6 72 320-393 6-77 (92)
329 KOG4653 Uncharacterized conser 70.1 1.9E+02 0.0041 32.4 15.7 182 151-346 729-918 (982)
330 KOG0414 Chromosome condensatio 69.6 65 0.0014 36.9 12.4 142 234-390 920-1066(1251)
331 PRK11088 rrmA 23S rRNA methylt 68.5 2.6 5.6E-05 40.5 1.4 27 69-95 2-31 (272)
332 PF07191 zinc-ribbons_6: zinc- 68.1 0.65 1.4E-05 34.5 -2.2 40 70-115 2-41 (70)
333 smart00288 VHS Domain present 67.8 34 0.00073 29.0 8.0 72 149-220 37-110 (133)
334 PRK14707 hypothetical protein; 67.5 3.2E+02 0.0069 34.1 22.6 273 151-431 207-487 (2710)
335 KOG0567 HEAT repeat-containing 67.0 28 0.0006 33.2 7.7 90 234-344 188-278 (289)
336 COG1592 Rubrerythrin [Energy p 66.9 7.5 0.00016 34.3 3.8 25 69-113 134-158 (166)
337 PF14205 Cys_rich_KTR: Cystein 66.5 5 0.00011 28.2 2.0 28 70-113 5-37 (55)
338 KOG0301 Phospholipase A2-activ 66.5 1.5E+02 0.0032 32.1 13.6 163 158-328 553-727 (745)
339 KOG4739 Uncharacterized protei 66.1 2.8 6.1E-05 39.0 1.0 51 80-135 15-66 (233)
340 PF05605 zf-Di19: Drought indu 65.9 2.8 6.1E-05 29.5 0.8 38 68-112 1-39 (54)
341 PF14500 MMS19_N: Dos2-interac 65.3 1.3E+02 0.0028 28.7 16.2 217 198-436 6-241 (262)
342 PF10272 Tmpp129: Putative tra 65.1 4.7 0.0001 40.2 2.5 35 84-118 303-354 (358)
343 smart00638 LPD_N Lipoprotein N 64.8 1.2E+02 0.0027 32.4 13.5 202 167-392 288-513 (574)
344 cd03568 VHS_STAM VHS domain fa 64.7 25 0.00055 30.3 6.6 71 233-304 37-109 (144)
345 PF11865 DUF3385: Domain of un 64.1 88 0.0019 27.4 10.1 139 274-423 9-148 (160)
346 cd03572 ENTH_epsin_related ENT 63.7 71 0.0015 26.7 8.9 71 362-432 41-119 (122)
347 PF10367 Vps39_2: Vacuolar sor 63.5 2.9 6.3E-05 33.7 0.6 34 64-97 73-108 (109)
348 KOG0883 Cyclophilin type, U bo 62.9 4.8 0.0001 39.9 2.0 53 65-117 97-154 (518)
349 COG5098 Chromosome condensatio 62.6 58 0.0012 35.4 9.8 111 319-433 301-417 (1128)
350 PF13251 DUF4042: Domain of un 62.5 41 0.0009 30.2 7.8 109 236-347 43-175 (182)
351 PF14726 RTTN_N: Rotatin, an a 62.4 52 0.0011 26.4 7.5 94 164-258 2-96 (98)
352 KOG0915 Uncharacterized conser 62.3 2.6E+02 0.0057 33.4 15.4 222 208-433 1013-1266(1702)
353 PHA02862 5L protein; Provision 62.3 7.5 0.00016 33.2 2.8 57 71-134 4-66 (156)
354 PRK09169 hypothetical protein; 62.2 3.5E+02 0.0075 33.9 16.9 91 151-243 165-257 (2316)
355 PF10363 DUF2435: Protein of u 61.9 49 0.0011 26.1 7.3 68 235-305 5-72 (92)
356 PF14500 MMS19_N: Dos2-interac 61.9 1.5E+02 0.0033 28.3 13.0 139 156-303 6-151 (262)
357 KOG1943 Beta-tubulin folding c 61.8 2.9E+02 0.0064 31.7 15.4 195 233-433 341-574 (1133)
358 cd03561 VHS VHS domain family; 60.7 48 0.001 28.0 7.7 73 149-221 37-112 (133)
359 PHA02825 LAP/PHD finger-like p 60.4 12 0.00026 32.6 3.8 48 68-116 7-60 (162)
360 KOG2137 Protein kinase [Signal 60.4 86 0.0019 34.1 10.8 139 233-379 389-528 (700)
361 cd00350 rubredoxin_like Rubred 60.0 7.6 0.00016 24.3 1.9 11 103-113 16-26 (33)
362 COG3813 Uncharacterized protei 59.1 10 0.00022 28.2 2.6 36 88-126 28-63 (84)
363 PF08216 CTNNBL: Catenin-beta- 58.9 12 0.00026 30.5 3.3 42 293-334 63-104 (108)
364 KOG1812 Predicted E3 ubiquitin 58.5 11 0.00024 38.2 3.8 33 69-101 146-182 (384)
365 KOG2956 CLIP-associating prote 58.2 2.3E+02 0.0051 29.4 15.5 142 235-388 331-477 (516)
366 KOG4275 Predicted E3 ubiquitin 58.2 2.5 5.3E-05 40.3 -0.8 38 69-113 300-340 (350)
367 PF01347 Vitellogenin_N: Lipop 57.8 2.7E+02 0.0059 29.9 18.0 205 150-383 348-584 (618)
368 KOG1949 Uncharacterized conser 57.7 2.8E+02 0.006 30.5 13.7 144 238-386 179-329 (1005)
369 cd03565 VHS_Tom1 VHS domain fa 56.8 74 0.0016 27.3 8.1 77 360-436 39-119 (141)
370 PF10915 DUF2709: Protein of u 56.7 11 0.00024 33.7 3.0 36 69-113 87-122 (238)
371 cd00197 VHS_ENTH_ANTH VHS, ENT 56.3 58 0.0013 26.5 7.2 71 360-430 38-113 (115)
372 PF00790 VHS: VHS domain; Int 55.3 44 0.00096 28.5 6.6 72 149-220 42-117 (140)
373 KOG2933 Uncharacterized conser 55.2 74 0.0016 31.1 8.4 135 149-297 88-226 (334)
374 KOG3579 Predicted E3 ubiquitin 55.0 6.3 0.00014 37.4 1.3 42 69-110 268-317 (352)
375 KOG2199 Signal transducing ada 54.8 58 0.0013 32.7 7.9 79 360-438 46-124 (462)
376 KOG0915 Uncharacterized conser 54.8 2.2E+02 0.0047 34.0 13.2 259 154-432 823-1110(1702)
377 cd03567 VHS_GGA VHS domain fam 54.0 39 0.00085 28.9 6.0 69 318-387 39-115 (139)
378 KOG1967 DNA repair/transcripti 53.7 39 0.00084 37.7 7.0 146 191-340 867-1018(1030)
379 COG4530 Uncharacterized protei 53.5 11 0.00025 30.4 2.3 32 67-98 7-43 (129)
380 KOG0414 Chromosome condensatio 53.0 1E+02 0.0023 35.4 10.3 127 289-433 936-1065(1251)
381 KOG1941 Acetylcholine receptor 52.9 5.6 0.00012 39.4 0.6 43 69-111 365-412 (518)
382 PHA03096 p28-like protein; Pro 52.2 8.5 0.00018 37.2 1.7 43 70-112 179-231 (284)
383 COG5098 Chromosome condensatio 50.7 76 0.0016 34.5 8.3 105 277-388 301-415 (1128)
384 cd00730 rubredoxin Rubredoxin; 49.3 7.6 0.00016 27.0 0.7 13 65-77 30-42 (50)
385 PF06012 DUF908: Domain of Unk 49.3 57 0.0012 32.3 7.2 75 208-282 238-323 (329)
386 KOG0211 Protein phosphatase 2A 48.7 4.3E+02 0.0092 29.5 14.8 220 152-386 440-662 (759)
387 PF03854 zf-P11: P-11 zinc fin 48.4 7.6 0.00016 26.5 0.5 32 84-116 16-47 (50)
388 KOG0825 PHD Zn-finger protein 47.5 14 0.0003 40.1 2.5 39 64-102 91-136 (1134)
389 KOG1020 Sister chromatid cohes 47.3 2.8E+02 0.006 33.2 12.6 104 151-264 818-923 (1692)
390 PF06844 DUF1244: Protein of u 47.1 12 0.00026 27.4 1.4 13 90-102 11-23 (68)
391 KOG3899 Uncharacterized conser 47.1 9.4 0.0002 36.4 1.1 27 90-116 328-366 (381)
392 PF10571 UPF0547: Uncharacteri 47.1 11 0.00025 22.2 1.1 9 71-79 2-10 (26)
393 PF00301 Rubredoxin: Rubredoxi 47.0 7.9 0.00017 26.5 0.4 13 65-77 30-42 (47)
394 PF11707 Npa1: Ribosome 60S bi 46.3 3E+02 0.0066 27.1 14.2 155 235-390 58-239 (330)
395 PRK04023 DNA polymerase II lar 46.3 30 0.00066 38.9 4.9 53 70-132 639-694 (1121)
396 COG5218 YCG1 Chromosome conden 46.2 3.1E+02 0.0067 29.5 11.7 111 147-270 89-204 (885)
397 PF08506 Cse1: Cse1; InterPro 45.9 3.3E+02 0.0072 27.5 15.4 128 247-383 225-370 (370)
398 KOG2032 Uncharacterized conser 45.8 1.2E+02 0.0025 31.7 8.6 155 273-433 252-417 (533)
399 PRK14892 putative transcriptio 44.7 15 0.00033 29.5 1.8 37 64-114 16-52 (99)
400 PRK05978 hypothetical protein; 44.6 14 0.00031 31.9 1.8 46 48-116 19-64 (148)
401 KOG2933 Uncharacterized conser 44.5 2.2E+02 0.0048 27.9 9.8 132 277-424 90-226 (334)
402 PF04821 TIMELESS: Timeless pr 44.0 2.9E+02 0.0064 26.3 11.5 39 183-221 32-72 (266)
403 PF12906 RINGv: RING-variant d 43.7 16 0.00035 24.9 1.6 29 82-110 13-47 (47)
404 KOG1991 Nuclear transport rece 43.7 5.5E+02 0.012 29.3 15.3 117 232-355 409-542 (1010)
405 PF06906 DUF1272: Protein of u 41.8 31 0.00068 24.4 2.8 27 88-117 28-54 (57)
406 PF01347 Vitellogenin_N: Lipop 41.8 92 0.002 33.6 8.0 142 232-391 394-556 (618)
407 KOG4718 Non-SMC (structural ma 41.3 14 0.00031 33.6 1.3 44 70-114 182-226 (235)
408 cd03572 ENTH_epsin_related ENT 41.0 2.1E+02 0.0047 23.9 9.0 77 117-201 14-92 (122)
409 cd00729 rubredoxin_SM Rubredox 40.9 14 0.00031 23.3 0.9 10 104-113 18-27 (34)
410 KOG2462 C2H2-type Zn-finger pr 40.7 13 0.00028 35.4 1.0 48 65-116 157-227 (279)
411 PLN03086 PRLI-interacting fact 40.2 31 0.00068 36.7 3.8 51 65-115 449-515 (567)
412 PRK12495 hypothetical protein; 39.8 13 0.00027 34.2 0.7 42 50-95 23-64 (226)
413 PF00096 zf-C2H2: Zinc finger, 39.8 7.5 0.00016 21.6 -0.5 13 70-82 1-13 (23)
414 PRK00448 polC DNA polymerase I 39.0 24 0.00052 41.9 3.0 39 65-115 904-944 (1437)
415 PF04499 SAPS: SIT4 phosphatas 38.0 2.7E+02 0.0058 29.2 10.3 114 316-433 20-150 (475)
416 PF08746 zf-RING-like: RING-li 37.6 46 0.00099 22.2 3.0 39 72-110 1-43 (43)
417 PF05883 Baculo_RING: Baculovi 37.1 34 0.00074 29.0 2.9 55 57-112 13-77 (134)
418 TIGR01405 polC_Gram_pos DNA po 37.1 27 0.00058 40.9 3.0 39 65-115 679-719 (1213)
419 PF13251 DUF4042: Domain of un 36.5 2.8E+02 0.0061 24.9 8.8 105 157-264 48-176 (182)
420 KOG1991 Nuclear transport rece 36.5 7E+02 0.015 28.5 18.7 235 148-390 409-673 (1010)
421 PRK14559 putative protein seri 36.1 21 0.00047 38.7 1.9 9 105-113 42-50 (645)
422 PF11864 DUF3384: Domain of un 35.9 5.2E+02 0.011 26.8 18.4 75 162-243 42-117 (464)
423 PRK00398 rpoP DNA-directed RNA 35.7 18 0.00038 24.4 0.8 12 104-115 21-32 (46)
424 PF06012 DUF908: Domain of Unk 35.6 1.5E+02 0.0033 29.3 7.7 73 295-367 241-324 (329)
425 PF13894 zf-C2H2_4: C2H2-type 35.5 13 0.00027 20.4 0.1 12 70-81 1-12 (24)
426 KOG1243 Protein kinase [Genera 35.5 6.3E+02 0.014 27.7 12.8 225 185-428 287-511 (690)
427 KOG1087 Cytosolic sorting prot 34.9 94 0.002 32.4 6.2 70 361-430 40-110 (470)
428 COG5116 RPN2 26S proteasome re 34.5 3.9E+02 0.0085 28.6 10.4 122 274-414 550-674 (926)
429 PF06676 DUF1178: Protein of u 33.0 43 0.00093 29.0 2.9 23 86-113 9-41 (148)
430 PF08216 CTNNBL: Catenin-beta- 32.8 44 0.00096 27.3 2.8 45 207-251 61-105 (108)
431 smart00734 ZnF_Rad18 Rad18-lik 32.6 21 0.00045 21.0 0.6 9 71-79 3-11 (26)
432 KOG1848 Uncharacterized conser 31.9 2.2E+02 0.0047 33.7 8.7 97 274-372 927-1029(1610)
433 PF14225 MOR2-PAG1_C: Cell mor 31.7 4.7E+02 0.01 25.0 17.1 163 205-386 75-252 (262)
434 PF00412 LIM: LIM domain; Int 31.5 37 0.00079 23.6 2.0 33 67-99 24-57 (58)
435 KOG2593 Transcription initiati 31.3 1.1E+02 0.0023 31.3 5.7 62 61-134 120-184 (436)
436 KOG0314 Predicted E3 ubiquitin 31.1 25 0.00053 36.1 1.3 70 64-135 214-287 (448)
437 KOG1078 Vesicle coat complex C 30.5 8E+02 0.017 27.4 17.5 65 196-265 250-314 (865)
438 KOG2137 Protein kinase [Signal 30.4 2.5E+02 0.0054 30.7 8.5 150 190-347 388-540 (700)
439 PF10521 DUF2454: Protein of u 30.4 2.9E+02 0.0063 26.6 8.6 32 232-263 118-149 (282)
440 PF12331 DUF3636: Protein of u 30.2 85 0.0018 27.2 4.2 38 332-369 109-146 (149)
441 PF11781 RRN7: RNA polymerase 30.1 25 0.00055 22.5 0.8 23 70-95 9-31 (36)
442 COG5116 RPN2 26S proteasome re 29.7 1.3E+02 0.0029 31.9 6.2 65 232-304 584-649 (926)
443 KOG2032 Uncharacterized conser 29.2 6.9E+02 0.015 26.2 18.0 103 159-262 268-371 (533)
444 KOG2487 RNA polymerase II tran 29.2 20 0.00043 34.0 0.2 34 69-123 273-308 (314)
445 PF09538 FYDLN_acid: Protein o 29.2 30 0.00066 28.3 1.3 14 68-81 8-21 (108)
446 TIGR00627 tfb4 transcription f 29.1 44 0.00095 32.3 2.6 11 105-115 256-266 (279)
447 cd01413 SIR2_Af2 SIR2_Af2: Arc 28.8 95 0.0021 28.8 4.8 43 87-129 119-166 (222)
448 PF07800 DUF1644: Protein of u 28.2 27 0.00059 30.4 0.9 20 68-87 1-20 (162)
449 TIGR01206 lysW lysine biosynth 28.0 30 0.00064 24.5 0.9 12 69-80 2-13 (54)
450 PF12726 SEN1_N: SEN1 N termin 27.7 2.3E+02 0.005 31.4 8.3 108 321-433 445-554 (727)
451 PF09889 DUF2116: Uncharacteri 27.7 83 0.0018 22.7 3.1 14 104-117 3-16 (59)
452 PF14225 MOR2-PAG1_C: Cell mor 26.9 5.6E+02 0.012 24.4 15.6 144 275-433 60-218 (262)
453 KOG4464 Signaling protein RIC- 26.8 5.3E+02 0.012 26.5 9.5 103 330-433 110-229 (532)
454 PF14663 RasGEF_N_2: Rapamycin 26.5 1.4E+02 0.003 24.5 4.8 39 318-356 9-47 (115)
455 KOG4464 Signaling protein RIC- 26.4 7.2E+02 0.016 25.6 13.9 137 211-347 65-232 (532)
456 PF12660 zf-TFIIIC: Putative z 26.4 18 0.0004 29.0 -0.4 45 70-114 15-65 (99)
457 PF02146 SIR2: Sir2 family; I 26.3 1E+02 0.0022 27.3 4.3 47 86-134 110-162 (178)
458 KOG1992 Nuclear export recepto 26.2 7.2E+02 0.016 27.9 11.0 175 193-370 500-706 (960)
459 PF12726 SEN1_N: SEN1 N termin 25.5 3.6E+02 0.0078 29.9 9.3 58 332-389 496-554 (727)
460 PF12773 DZR: Double zinc ribb 25.4 63 0.0014 21.9 2.2 12 104-115 29-40 (50)
461 smart00132 LIM Zinc-binding do 25.4 58 0.0013 20.1 1.9 34 72-114 2-37 (39)
462 KOG1815 Predicted E3 ubiquitin 25.2 50 0.0011 34.2 2.4 36 67-102 68-104 (444)
463 PF12830 Nipped-B_C: Sister ch 24.9 5E+02 0.011 23.2 12.8 142 194-347 11-168 (187)
464 COG5236 Uncharacterized conser 24.7 56 0.0012 32.1 2.4 47 67-113 59-106 (493)
465 PF11864 DUF3384: Domain of un 24.5 8.1E+02 0.017 25.4 15.5 113 164-285 5-117 (464)
466 PF08389 Xpo1: Exportin 1-like 24.3 3.3E+02 0.0072 22.5 7.1 106 232-341 25-148 (148)
467 PF14631 FancD2: Fanconi anaem 24.1 1.3E+03 0.029 27.9 14.8 259 151-433 194-503 (1426)
468 KOG1086 Cytosolic sorting prot 24.0 8.1E+02 0.018 25.3 12.9 137 127-267 27-207 (594)
469 TIGR02300 FYDLN_acid conserved 23.9 43 0.00094 28.0 1.3 14 68-81 8-21 (129)
470 COG3492 Uncharacterized protei 23.7 38 0.00083 26.4 0.9 13 90-102 42-54 (104)
471 PF10235 Cript: Microtubule-as 23.4 61 0.0013 25.5 1.9 38 69-116 44-81 (90)
472 PF14663 RasGEF_N_2: Rapamycin 23.3 1.8E+02 0.004 23.8 5.0 31 234-264 9-39 (115)
473 PF04499 SAPS: SIT4 phosphatas 23.2 4E+02 0.0087 27.9 8.6 108 232-345 20-147 (475)
474 COG5537 IRR1 Cohesin [Cell div 23.2 9.8E+02 0.021 25.9 11.4 100 158-261 284-385 (740)
475 PF09723 Zn-ribbon_8: Zinc rib 22.8 19 0.00041 23.8 -0.8 9 104-112 26-34 (42)
476 PF07923 N1221: N1221-like pro 22.6 1.4E+02 0.0031 28.9 4.9 54 149-202 60-127 (293)
477 PF03810 IBN_N: Importin-beta 22.4 1.8E+02 0.0039 21.2 4.5 35 401-435 13-49 (77)
478 PF12530 DUF3730: Protein of u 22.3 6.3E+02 0.014 23.4 13.8 44 214-261 106-150 (234)
479 PF04388 Hamartin: Hamartin pr 22.3 9.1E+02 0.02 26.5 11.4 136 149-304 4-139 (668)
480 PHA00626 hypothetical protein 21.9 76 0.0017 22.5 2.0 7 71-77 2-8 (59)
481 KOG3970 Predicted E3 ubiquitin 21.7 1.6E+02 0.0035 27.2 4.5 57 56-114 39-104 (299)
482 PRK07758 hypothetical protein; 21.6 57 0.0012 25.9 1.5 28 87-121 12-40 (95)
483 COG4068 Uncharacterized protei 21.6 1.4E+02 0.003 21.4 3.2 24 104-127 8-31 (64)
484 PF12874 zf-met: Zinc-finger o 21.3 25 0.00054 19.9 -0.5 14 70-83 1-14 (25)
485 PRK04966 hypothetical protein; 20.9 1.9E+02 0.0042 21.7 4.1 42 120-161 8-49 (72)
486 PF10497 zf-4CXXC_R1: Zinc-fin 20.5 1E+02 0.0022 25.0 2.8 25 88-112 37-69 (105)
487 COG1885 Uncharacterized protei 20.2 33 0.00072 27.5 -0.1 14 103-116 48-61 (115)
488 KOG1087 Cytosolic sorting prot 20.2 7E+02 0.015 26.1 9.4 69 150-218 39-109 (470)
489 PF03130 HEAT_PBS: PBS lyase H 20.1 1.5E+02 0.0033 17.2 2.8 26 249-285 1-26 (27)
490 PF12830 Nipped-B_C: Sister ch 20.0 2.1E+02 0.0045 25.7 5.1 68 361-435 10-77 (187)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=1.3e-27 Score=271.01 Aligned_cols=283 Identities=19% Similarity=0.170 Sum_probs=246.7
Q ss_pred hhcHHHHHHHhhcc--chHHHHHHHHHHHHHHHHcHHHHHHHHh-hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCch
Q 041252 148 QGRASELLGTLKKV--KGQARVQALKELHQIAAAHASARKTMVD-EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSE 224 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~ 224 (450)
...+..+++.|+++ +.+.|..|+..|+.+++.+++||..+.+ .|+||.|+.+|.+. +..++.+|+.+|.+|+.+++
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg-~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG-TLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCHH
Confidence 45688899999976 6789999999999999999999999997 79999999999875 78899999999999999999
Q ss_pred hhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC--C-ChhhHhhhhhHHHHHHHHHhcCC--CccchhHHHHH
Q 041252 225 SKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK--D-FRPEIVSSHRLLIGLMRLVKNKR--HPNGILPGLSL 299 (450)
Q Consensus 225 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~--~-~~~~~~~~~g~l~~Lv~lL~~~~--~~~~~~~al~a 299 (450)
+|..|+..|+|++|+.+|++++++.|++|+.+|++|+..+ + .+..++...|+++.|+.+++++. +..++..+..+
T Consensus 91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764 3 34456778999999999999852 11234566799
Q ss_pred HHHhccChHHHHH-HHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCC-hHHH
Q 041252 300 LRSICLLNEVRSL-VVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVS-EDCT 376 (450)
Q Consensus 300 L~~Ls~~~~~~~~-iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s-~~~~ 376 (450)
|+|||.+.+++.. ++++|+||.|+.+|+++++..++.|+.+|.+++.+ ++++..+++ +|+||.||++|.+++ ..++
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~~~~VR 249 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGNEVSVR 249 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCCChHHH
Confidence 9999998888754 57999999999999999999999999999888866 779999998 899999999998754 5899
Q ss_pred HHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCC--------CHHHHHHHHHHHHHHHhh
Q 041252 377 QYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGC--------NPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 377 e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~--------~~~~k~~A~~lL~~ls~~ 433 (450)
++|+++|++||..++ +.+..+++.|+++.|+.++.++. +...++.|.+.|.++...
T Consensus 250 E~AA~AL~nLAs~s~-e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 250 AEAAGALEALSSQSK-EAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 999999999999875 55678889999999999998642 234689999999997775
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=2.3e-26 Score=260.87 Aligned_cols=281 Identities=17% Similarity=0.175 Sum_probs=243.6
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
+.++.|+..|++++.+.|..|+..|++++..++++|..++++|+||+|+++|.+. +..++++|+++|.|++.++++++.
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCcHHHHH
Confidence 5689999999999999999999999999998889999999999999999999875 789999999999999998766665
Q ss_pred cc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh-------------------------------------hhH
Q 041252 229 LM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR-------------------------------------PEI 270 (450)
Q Consensus 229 i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~-------------------------------------~~~ 270 (450)
++ +.|++++|+++|++++.+.++.|+++|.+|+...+.. ...
T Consensus 525 iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 525 CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 55 7899999999999999999999999999996322110 011
Q ss_pred hhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC--
Q 041252 271 VSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-- 347 (450)
Q Consensus 271 ~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-- 347 (450)
....|+++.|+.+|+++ ++..++.|+++|.+++ .+++++..++..|+|++|+.+|++++.+++..++++|.+|+..
T Consensus 605 ~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 605 SAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK 683 (2102)
T ss_pred hhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC
Confidence 12347899999999987 6889999999999998 5677889999999999999999999999999999999999954
Q ss_pred hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHH
Q 041252 348 PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELL 427 (450)
Q Consensus 348 ~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL 427 (450)
++++..+++ .|+|++|+++|...+..+++.|+.+|.+++.... .+.++.+.|+++.|+.++++| ++..|+.|+++|
T Consensus 684 ~~q~~~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e--~~~ei~~~~~I~~Lv~lLr~G-~~~~k~~Aa~AL 759 (2102)
T PLN03200 684 ENRKVSYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE--VAAEALAEDIILPLTRVLREG-TLEGKRNAARAL 759 (2102)
T ss_pred HHHHHHHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch--HHHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHH
Confidence 556677777 8999999999999999999999999999999874 456677889999999999999 688888888877
Q ss_pred HHHHhhcC
Q 041252 428 KLCSLNYT 435 (450)
Q Consensus 428 ~~ls~~~~ 435 (450)
..+..+.+
T Consensus 760 ~~L~~~~~ 767 (2102)
T PLN03200 760 AQLLKHFP 767 (2102)
T ss_pred HHHHhCCC
Confidence 66665533
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.4e-26 Score=215.25 Aligned_cols=282 Identities=20% Similarity=0.265 Sum_probs=244.7
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM 230 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~ 230 (450)
++.|+..+.....++|..++++|.+++.. .+||..++..|++.++.++-++. +..++.++.++|.|+....+||+.++
T Consensus 128 l~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLaksk-dirvqrnatgaLlnmThs~EnRr~LV 205 (550)
T KOG4224|consen 128 LDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSK-DIRVQRNATGALLNMTHSRENRRVLV 205 (550)
T ss_pred hHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccc-hhhHHHHHHHHHHHhhhhhhhhhhhh
Confidence 45566555555667899999999999977 56999999999999999965554 78899999999999999999999999
Q ss_pred CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhh--HHHHHHHHHhcCCCccchhHHHHHHHHhccChH
Q 041252 231 QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHR--LLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE 308 (450)
Q Consensus 231 ~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g--~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~ 308 (450)
..|+++.||.++++++..+|..|+.+|.+++-+.-.++. ..+.+ .++.|+.+..++ ++.++..|.-||+||+++.+
T Consensus 206 ~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~-Laqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~ 283 (550)
T KOG4224|consen 206 HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI-LAQAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTE 283 (550)
T ss_pred ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH-HHhcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccch
Confidence 999999999999999999999999999999866544443 44444 999999999887 68899999999999999999
Q ss_pred HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHHHHHHhc
Q 041252 309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV-SEDCTQYALSILWSIC 387 (450)
Q Consensus 309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~ 387 (450)
.+..++++|.+|.++++|+++........+..++|++.+|-|-..|.+ +|.+.+||++|..+ +++.+-+|+.+||+|+
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~d-agfl~pLVrlL~~~dnEeiqchAvstLrnLA 362 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIAD-AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLA 362 (550)
T ss_pred hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceec-ccchhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence 999999999999999999998888888899999999999999999999 99999999999886 4679999999999999
Q ss_pred ccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCcc
Q 041252 388 KIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTF 439 (450)
Q Consensus 388 ~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~ 439 (450)
..++ ..+..+.+.|++++|..++..+ .-..+..-...+..++.+..+...
T Consensus 363 asse-~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d~~k~~ 412 (550)
T KOG4224|consen 363 ASSE-HNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALNDNDKEA 412 (550)
T ss_pred hhhh-hhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhccccHHH
Confidence 8764 4456778999999999999988 456677777778887777544333
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.2e-26 Score=214.24 Aligned_cols=277 Identities=20% Similarity=0.246 Sum_probs=244.2
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
|.+..+..+=++.+..+|..|...|.++.. +.+||+.++.+|++|.|+.++++. +.++++.+..++.|++.+..+|+.
T Consensus 167 GaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~-d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 167 GALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSG-DLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred cchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccC-ChhHHHHHHHHhhhhhhhHHHHHH
Confidence 566677764455566789999999999985 577999999999999999999886 889999999999999999999999
Q ss_pred ccCCC--chHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252 229 LMQPA--KVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL 306 (450)
Q Consensus 229 i~~~g--~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~ 306 (450)
+++.+ .++.||++++++++.++-.|..+|++|+++.+...++ .+.|.+|.++++|+++. -....+...+++|++.+
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ei-v~ag~lP~lv~Llqs~~-~plilasVaCIrnisih 322 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREI-VEAGSLPLLVELLQSPM-GPLILASVACIRNISIH 322 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHH-HhcCCchHHHHHHhCcc-hhHHHHHHHHHhhcccc
Confidence 98866 9999999999999999999999999999888877765 56788999999998863 45677888899999999
Q ss_pred hHHHHHHHhcCCHHHHHHhcCCCC-hhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252 307 NEVRSLVVSIGAVPQLVELLPSLD-PDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW 384 (450)
Q Consensus 307 ~~~~~~iv~~G~v~~Lv~lL~~~~-~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~ 384 (450)
+-|-..|+++|.+.+||++|+.++ ++++-.|..+|++|+. ...++..|.+ +|+||.+.+++..++-.+++.-.+++.
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvqseisac~a 401 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQSEISACIA 401 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHHHHHHHHHH
Confidence 999999999999999999998875 5699999999999997 5889999999 899999999999999999999889998
Q ss_pred HhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 385 SICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 385 ~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
.|+.... -+....+.|.++.|+.+..+. +.+++.+|+..|-+++.+
T Consensus 402 ~Lal~d~--~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 402 QLALNDN--DKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHhccc--cHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhh
Confidence 8888764 345667999999999999888 678888888888887766
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.7e-24 Score=216.03 Aligned_cols=281 Identities=22% Similarity=0.258 Sum_probs=242.6
Q ss_pred hhcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hh
Q 041252 148 QGRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ES 225 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~ 225 (450)
.|.++.+|..|+.. ++..|..|+++|.+++..+.+.-+.++++|++|.++.+|.+. +..+++.|+++|.|++.+. ..
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~-~~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP-SADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC-cHHHHHHHHHHHhccccCChHH
Confidence 48899999999754 578999999999999999999999999999999999999886 7899999999999999876 66
Q ss_pred hhhccCCCchHHHHHHhcCCCH-HHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252 226 KTNLMQPAKVSLLVDMLNEGSV-ETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC 304 (450)
Q Consensus 226 k~~i~~~g~i~~Lv~lL~~~~~-~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls 304 (450)
|..+.+.|++++|+.++...+. ....+++|+|.+|+.........-.-..+++.|..++.+. ++++...|++||.+|+
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST-DEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHh
Confidence 7788899999999999987754 7889999999999977644444445567899999999986 7899999999999999
Q ss_pred -cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHH-HHhccCCChHHHHHHHhc-CChHHHHHHHH
Q 041252 305 -LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKL-ALKDCANTIPNTVRLLMR-VSEDCTQYALS 381 (450)
Q Consensus 305 -~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~-~i~~~~g~i~~Lv~lL~~-~s~~~~e~A~~ 381 (450)
..++....++++|+++.|+++|...+..++-.|+.++.|++...+.+. .+.+ .|++|.|..++.. .....++.|++
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~-~~~L~~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN-SGALPVLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh-cChHHHHHHHhccCcchhHHHHHHH
Confidence 555666677799999999999999899999999999999987755554 5556 8999999999985 45668899999
Q ss_pred HHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 382 ILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 382 ~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
+|.|++..+.+ ..+.++.+|.+|.|+.+++++ .-.+|+.|++++.++...
T Consensus 345 ~iSNItAG~~~-qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 345 TISNITAGNQE-QIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHHHhhcCCHH-HHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhccc
Confidence 99999998864 456788999999999999998 677888888888876654
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.8e-22 Score=202.93 Aligned_cols=283 Identities=18% Similarity=0.191 Sum_probs=241.4
Q ss_pred hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhh
Q 041252 148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT 227 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~ 227 (450)
.++++-++.+|.+++.+++.+|+++|.+++.+++..|..+.+.|++++|+.++..........++.++|.||+.+...-.
T Consensus 151 agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P 230 (514)
T KOG0166|consen 151 AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP 230 (514)
T ss_pred CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence 47788899999999999999999999999999999999999999999999999875334688999999999998764333
Q ss_pred hccC-CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252 228 NLMQ-PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL 306 (450)
Q Consensus 228 ~i~~-~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~ 306 (450)
.+.. ...++.|..+|.+.+.++...|+++|.+|+........++...|.++.|+.+|... +..++..|++++.|+...
T Consensus 231 ~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~PaLRaiGNIvtG 309 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-SPKVVTPALRAIGNIVTG 309 (514)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC-CcccccHHHhhccceeec
Confidence 3332 56799999999999999999999999999977777777788999999999999986 577889999999999865
Q ss_pred hHH-HHHHHhcCCHHHHHHhcCC-CChhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252 307 NEV-RSLVVSIGAVPQLVELLPS-LDPDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL 383 (450)
Q Consensus 307 ~~~-~~~iv~~G~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L 383 (450)
.+. -..++..|++|.|..+|.. ....+++.|+++|.|++. +.+..+++.+ +|.+|.|+++|..+..+.+..|++++
T Consensus 310 ~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVid-a~l~p~Li~~l~~~ef~~rKEAawaI 388 (514)
T KOG0166|consen 310 SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVID-ANLIPVLINLLQTAEFDIRKEAAWAI 388 (514)
T ss_pred cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHH-cccHHHHHHHHhccchHHHHHHHHHH
Confidence 555 4556689999999999984 455699999999999985 4778888888 89999999999999999999999999
Q ss_pred HHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 384 WSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 384 ~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
.|++.....+....+++.|++++++.+|.-. +...-..+...|.++-..
T Consensus 389 sN~ts~g~~~qi~yLv~~giI~plcdlL~~~-D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 389 SNLTSSGTPEQIKYLVEQGIIKPLCDLLTCP-DVKIILVALDGLENILKV 437 (514)
T ss_pred HhhcccCCHHHHHHHHHcCCchhhhhcccCC-ChHHHHHHHHHHHHHHHH
Confidence 9999988766677889999999999999554 445556666666554433
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.88 E-value=2e-21 Score=182.40 Aligned_cols=281 Identities=20% Similarity=0.219 Sum_probs=231.3
Q ss_pred hhcHHHHHHHhhccch-HHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hh
Q 041252 148 QGRASELLGTLKKVKG-QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ES 225 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~~~-~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~ 225 (450)
.|.+++++..+.+... -.+..|+++|.++++.....-+.++++|++|.++.+|.+. +.++++.++++|.|++.+. .+
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccCCchhH
Confidence 4778999999965443 3688999999999988776778889999999999999875 7899999999999999876 56
Q ss_pred hhhccCCCchHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHh
Q 041252 226 KTNLMQPAKVSLLVDMLNEG--SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSI 303 (450)
Q Consensus 226 k~~i~~~g~i~~Lv~lL~~~--~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~L 303 (450)
|..+.+.|++.+++.+|.+. +.....++.|+|.||+.........-.-...+|.|.+++.+. ++++...|.||+..|
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~-D~evlvDA~WAiSYl 270 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR-DPEVLVDACWAISYL 270 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHh
Confidence 77888999999999999876 457889999999999876433322222234689999999886 799999999999999
Q ss_pred ccCh-HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHH-HhccCCChHHHHHHHhcCChHHHHHHHH
Q 041252 304 CLLN-EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLA-LKDCANTIPNTVRLLMRVSEDCTQYALS 381 (450)
Q Consensus 304 s~~~-~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~-i~~~~g~i~~Lv~lL~~~s~~~~e~A~~ 381 (450)
+..+ +-...+.+.|..+.|+++|...+..++..|+..+.|+....+.+.. +++ .|+++.+-.+|.+..+.++..|++
T Consensus 271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~-~G~L~a~~~lLs~~ke~irKEaCW 349 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIIN-CGALKAFRSLLSSPKENIRKEACW 349 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehhee-cccHHHHHHHhcChhhhhhhhhhe
Confidence 9554 4555666899999999999999999999999999999977555554 555 899999999999888899999999
Q ss_pred HHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 382 ILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 382 ~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
.+.|++..+.++ .+.++++..+|+|+.+|.+. .-.+|+.|.+++.+.+..
T Consensus 350 TiSNITAGnteq-iqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsg 399 (526)
T COG5064 350 TISNITAGNTEQ-IQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSG 399 (526)
T ss_pred eecccccCCHHH-HHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhcc
Confidence 999999988744 56788999999999999887 456666666655554433
No 8
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.87 E-value=1.1e-22 Score=155.25 Aligned_cols=72 Identities=42% Similarity=0.713 Sum_probs=63.3
Q ss_pred CCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252 66 IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY 137 (450)
Q Consensus 66 ~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~ 137 (450)
+|++|+||||+++|+|||++++||||||++|++|+..++.+||.|+++++..+++||..|++.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 699999999999999999999999999999999999878999999999999999999999999999999874
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.85 E-value=2.3e-20 Score=175.43 Aligned_cols=278 Identities=16% Similarity=0.166 Sum_probs=230.7
Q ss_pred hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCC-ChhhHHHHHHHHHhcCCCchhh
Q 041252 148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFT-SHAVGSEAVGVLVNLTLDSESK 226 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~-~~~v~~~Al~~L~~Ls~~~~~k 226 (450)
.+.++.++++|.++..+++.+++++|-+++.+++..|..+.+.|++++++.+|.++. +..+.+++.++|.||+......
T Consensus 156 ~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 156 AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred CCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 478999999999999999999999999999999999999999999999999987653 2478899999999999754222
Q ss_pred hhcc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252 227 TNLM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL 305 (450)
Q Consensus 227 ~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~ 305 (450)
..-- -..+++.|.+++.+.++++...|+|+|..|+.....+..++...|..+.|+++|.++ +..++..+++...|+..
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-sa~iqtPalR~vGNIVT 314 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPALRSVGNIVT 314 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-cccccCHHHHhhcCeee
Confidence 1111 145689999999999999999999999999887767777778889999999999986 67788999999999985
Q ss_pred ChHHH-HHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc-CChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252 306 LNEVR-SLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS-SLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL 383 (450)
Q Consensus 306 ~~~~~-~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~-~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L 383 (450)
..+.+ ..++..|+++++..+|++....++..|++++.|+. .+.+.-+++.+ ++.||+|+++|....-+.+..|++++
T Consensus 315 G~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid-~nliPpLi~lls~ae~k~kKEACWAi 393 (526)
T COG5064 315 GSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVID-ANLIPPLIHLLSSAEYKIKKEACWAI 393 (526)
T ss_pred cCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 54444 55668999999999999988899999999999997 45777788888 89999999999998899999999999
Q ss_pred HHhcccCch--hHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041252 384 WSICKIAPE--ECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLK 428 (450)
Q Consensus 384 ~~L~~~~~~--~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~ 428 (450)
.|.+...-. +..+..+..|.+.+|..+|.-. ...+-+.+...+.
T Consensus 394 sNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~-dNkiiev~LD~~e 439 (526)
T COG5064 394 SNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV-DNKIIEVALDAIE 439 (526)
T ss_pred HhhhccccCCchHHHHHHHccchhHHHHHHhcc-CccchhhhHHHHH
Confidence 998765521 3456778999999999999654 2223344444333
No 10
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.80 E-value=1.4e-18 Score=186.43 Aligned_cols=263 Identities=21% Similarity=0.201 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCC-------C----ChhhHHHHHHHHHhcCCCc-hhhhhccC-CCc
Q 041252 168 QALKELHQIAAAHASARKTMVDEGGVALISSLLGPF-------T----SHAVGSEAVGVLVNLTLDS-ESKTNLMQ-PAK 234 (450)
Q Consensus 168 ~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~-------~----~~~v~~~Al~~L~~Ls~~~-~~k~~i~~-~g~ 234 (450)
.|+..|.++.. ++++|+.+-+.|++.++-.||.-. + ...++..|..+|-||...+ .||..+-. .|+
T Consensus 317 aA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 57777777764 578999999999999998877421 1 2357889999999999866 67887764 899
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-ChHHHHH
Q 041252 235 VSLLVDMLNEGSVETKINCTRLIEKLMEE-KDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-LNEVRSL 312 (450)
Q Consensus 235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~~-~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~~~~~~~ 312 (450)
+..+|..|.+...++.+--+.+|+||+-. +...+.++.+.|-+..|+...-........++.+.|||||+. +.+||..
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~ 475 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE 475 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence 99999999999999999999999999843 334567788899889988876543346789999999999995 5789999
Q ss_pred HHh-cCCHHHHHHhcCC----CChhHHHHHHHHHHHhcCC----hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252 313 VVS-IGAVPQLVELLPS----LDPDCLQLALCILDALSSL----PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL 383 (450)
Q Consensus 313 iv~-~G~v~~Lv~lL~~----~~~~~~~~al~~L~~L~~~----~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L 383 (450)
|.. .|++.+||.+|.- ....+.|.|-++|+|.++. +..|+.+.+ .++|..|++.|.++|-.+..+++++|
T Consensus 476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~-~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR-HNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH-hhHHHHHHHHhhhcceEEeecchhhh
Confidence 999 6999999999943 3468999999999998754 667777887 69999999999999999999999999
Q ss_pred HHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 384 WSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 384 ~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
|||...+++ .++...+.|+++.|..++++.....+.-.|+.|..+|...
T Consensus 555 WNLSAR~p~-DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 555 WNLSARSPE-DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhcCCHH-HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999984 4667779999999999999984455555555555555544
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.77 E-value=5e-17 Score=168.57 Aligned_cols=281 Identities=21% Similarity=0.215 Sum_probs=226.7
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC---chh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD---SES 225 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~---~~~ 225 (450)
..+++.+.+|.+.....|..|...|+.+|..+...|..+.+.|+|+.|+.+|.+. ..+++..|+++|.||... ++|
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCccc
Confidence 4578899999999999999999999999999999999999999999999999986 789999999999999874 368
Q ss_pred hhhccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHh---------------------------------
Q 041252 226 KTNLMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIV--------------------------------- 271 (450)
Q Consensus 226 k~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~--------------------------------- 271 (450)
|-.|.+.++|+.++++|.. +|.++++..+.+|+||++.+..+..++
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 8999999999999999996 699999999999999977642111111
Q ss_pred ----------------------hhhhHHHHHHHHHhc-----CCC-----------------------------------
Q 041252 272 ----------------------SSHRLLIGLMRLVKN-----KRH----------------------------------- 289 (450)
Q Consensus 272 ----------------------~~~g~l~~Lv~lL~~-----~~~----------------------------------- 289 (450)
.-.|+|..|+..++. ..+
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 112566666664431 001
Q ss_pred -------------------------------------------------------------ccchhHHHHHHHHhccC--
Q 041252 290 -------------------------------------------------------------PNGILPGLSLLRSICLL-- 306 (450)
Q Consensus 290 -------------------------------------------------------------~~~~~~al~aL~~Ls~~-- 306 (450)
+.+.+++++||.||+..
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 12455666677777621
Q ss_pred ---hHHHHHH-HhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC------ChHHH
Q 041252 307 ---NEVRSLV-VSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV------SEDCT 376 (450)
Q Consensus 307 ---~~~~~~i-v~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~------s~~~~ 376 (450)
...+..+ ....+.++|+++|+..+..+...+..+|+||+.+..+|..|.. ++|+.||+.|... ++...
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv 629 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTV 629 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHH
Confidence 1234444 4566889999999999999999999999999999999999985 8999999999765 25788
Q ss_pred HHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 377 QYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 377 e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
..++.+|+++...+. ..++.+.+.+++++|+.+..+..++..-+.|..+|..+-.+
T Consensus 630 ~~vc~tl~niv~~~~-~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 630 RAVCHTLNNIVRKNV-LNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred HHHHHhHHHHHHHhH-HHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 889999999998776 44678889999999999998877788888888888776443
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.77 E-value=7.6e-17 Score=170.71 Aligned_cols=257 Identities=18% Similarity=0.211 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhc
Q 041252 164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLN 243 (450)
Q Consensus 164 ~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~ 243 (450)
.....++..|.+++ ++..++..+++.|+|+.|+++|.+. +.++.-.++++|..||...+||..|.+.|+|+.|++++.
T Consensus 264 qLlrv~~~lLlNLA-ed~~ve~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 264 QLLRVAFYLLLNLA-EDPRVELKMVNKGIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHh-cChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 34455777788888 4567899999999999999999876 788999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHH
Q 041252 244 EGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLV 323 (450)
Q Consensus 244 ~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv 323 (450)
+++.+.+..+..+|.||+.+.+.+. .+.+.|++|.|+.+|.++ +.+..++.+|++||.++++|..+...+++|.++
T Consensus 342 s~~~~l~~~aLrlL~NLSfd~~~R~-~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~ 417 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSFDPELRS-QMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAYTDCIPQLM 417 (708)
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHH-HHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhhcchHHHHH
Confidence 9999999999999999987776654 577899999999999764 356779999999999999999999999999999
Q ss_pred HhcCC-CChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcC
Q 041252 324 ELLPS-LDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAG 402 (450)
Q Consensus 324 ~lL~~-~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G 402 (450)
++|-+ +++.+...+++++.||+.++.+.+.+.+ .||++.|++...+..... .+.++.|++.+.+. .+.. . .+
T Consensus 418 ~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~-g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~-~k~~-f-~~ 490 (708)
T PF05804_consen 418 QMLLENSEEEVQLELIALLINLALNKRNAQLMCE-GNGLQSLMKRALKTRDPL---LLKLIRNISQHDGP-LKEL-F-VD 490 (708)
T ss_pred HHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh-cCcHHHHHHHHHhcccHH---HHHHHHHHHhcCch-HHHH-H-HH
Confidence 98744 4666777889999999999999999998 799999999987655432 45789999998842 2222 2 35
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 403 LAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 403 ~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
.+..|+.++.++.++...-.+..+|.+++..
T Consensus 491 ~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~ 521 (708)
T PF05804_consen 491 FIGDLAKIVSSGDSEEFVVECLGILANLTIP 521 (708)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence 7888888888876777888888888887643
No 13
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.76 E-value=1.1e-16 Score=169.37 Aligned_cols=285 Identities=17% Similarity=0.192 Sum_probs=228.1
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
+.+..|++.|.+.+.+....++..|++++-. .+||..+.+.|+|+.|++++.+. +.+.+..++.+|.|||.+++.|..
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~-~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSE-NEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhCcCHHHHHH
Confidence 4577899999998889999999999999854 56999999999999999999875 678999999999999999999999
Q ss_pred ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH
Q 041252 229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE 308 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~ 308 (450)
|++.|.+|.|+.+|..+ ..+..+..+|++||.+++.+ ..+...++++.|++++.....+.+...++.++.|||.++.
T Consensus 368 mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r-~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEAR-SMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR 444 (708)
T ss_pred HHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhH-HHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence 99999999999999754 45567899999998776554 4566667899999988776556677788899999999999
Q ss_pred HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCh-hhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHHHHHHh
Q 041252 309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLP-EGKLALKDCANTIPNTVRLLMRV-SEDCTQYALSILWSI 386 (450)
Q Consensus 309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~-e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L 386 (450)
|...+++.|+++.|++..-.... ...++.++|++.++ ..+..+.+ .|..|+.++... ++...-.++++|.|+
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~~---~i~~L~~~v~~~~~ee~~vE~LGiLaNL 518 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFVD---FIGDLAKIVSSGDSEEFVVECLGILANL 518 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHHH---HHHHHHHHhhcCCcHHHHHHHHHHHHhc
Confidence 99999999999999998744332 22457999999997 56666654 688899988775 567888899999999
Q ss_pred cccCchhHHHHHHhcChHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhhcCCCcccccccc
Q 041252 387 CKIAPEECSSAAVDAGLAAKLFLVIQSGCN-PVLKQRSAELLKLCSLNYTDTTFISKCKL 445 (450)
Q Consensus 387 ~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~-~~~k~~A~~lL~~ls~~~~~~~~i~~~~~ 445 (450)
...+. ...+.+.+.+.+|.|..+|..+.+ +.+.-.+..++..++........+.++.+
T Consensus 519 ~~~~l-d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgl 577 (708)
T PF05804_consen 519 TIPDL-DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGL 577 (708)
T ss_pred ccCCc-CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCCh
Confidence 87653 344455568999999999977633 45666666677666655444444544444
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.5e-16 Score=147.29 Aligned_cols=270 Identities=15% Similarity=0.255 Sum_probs=219.7
Q ss_pred ccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCC-CChhhHHHHHHHHHh-cCCCchhhhhccCCCchHH
Q 041252 160 KVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPF-TSHAVGSEAVGVLVN-LTLDSESKTNLMQPAKVSL 237 (450)
Q Consensus 160 ~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~-~~~~v~~~Al~~L~~-Ls~~~~~k~~i~~~g~i~~ 237 (450)
+++...-.+++.+|-.+....++ +.++-+...++.+|... .+.++....+..+.. ...++.||+.+++.+.++.
T Consensus 118 ~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~L 193 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILEL 193 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Confidence 34555777888888888765443 55666788888988643 245666667777776 4458899999999999999
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHHhccCCChhhH---------hhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252 238 LVDMLNEG-SVETKINCTRLIEKLMEEKDFRPEI---------VSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN 307 (450)
Q Consensus 238 Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~---------~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~ 307 (450)
+...|... ...+...+.++++.|..+++.+..+ +...|++..|++.++..-+|+.......+|..|+..+
T Consensus 194 i~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~ 273 (461)
T KOG4199|consen 194 ILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRD 273 (461)
T ss_pred HHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 99888754 4458888899999998777766443 3445778999999998778899999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHhcCCCC----hhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC--ChHHHHHHHH
Q 041252 308 EVRSLVVSIGAVPQLVELLPSLD----PDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV--SEDCTQYALS 381 (450)
Q Consensus 308 ~~~~~iv~~G~v~~Lv~lL~~~~----~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~--s~~~~e~A~~ 381 (450)
+.++.+++.|++..|++++.+++ ......+++.|+.|+.++.++..|++ .||.+.++.++.++ ++.+.+.++.
T Consensus 274 E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~-~gg~~~ii~l~~~h~~~p~Vi~~~~a 352 (461)
T KOG4199|consen 274 EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE-KGGLDKIITLALRHSDDPLVIQEVMA 352 (461)
T ss_pred HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH-hcChHHHHHHHHHcCCChHHHHHHHH
Confidence 99999999999999999997743 34668899999999999999999999 89999999999876 5789999999
Q ss_pred HHHHhcccCchhHHHHHHhcChHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhhcC
Q 041252 382 ILWSICKIAPEECSSAAVDAGLAAKLFLVIQS-GCNPVLKQRSAELLKLCSLNYT 435 (450)
Q Consensus 382 ~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s-~~~~~~k~~A~~lL~~ls~~~~ 435 (450)
++..||..+|+. ...++++|+....++-|.. +-...++++|.+++|++..+++
T Consensus 353 ~i~~l~LR~pdh-sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 353 IISILCLRSPDH-SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred HHHHHHhcCcch-HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999966 4567898888888877754 4445688999999999877743
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=9e-16 Score=144.51 Aligned_cols=276 Identities=17% Similarity=0.217 Sum_probs=224.5
Q ss_pred HHHHHHhhc--cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh---
Q 041252 152 SELLGTLKK--VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK--- 226 (450)
Q Consensus 152 ~~Lv~~L~~--~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k--- 226 (450)
.-++++|.. .++++-...+..++.-|-.|+.||..+++.++.+.+...|.....+.+.+++.++++.|..+++-|
T Consensus 148 ~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~f 227 (461)
T KOG4199|consen 148 AVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVF 227 (461)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeec
Confidence 345666643 455677778999999999999999999999999999987766544468888999999988777654
Q ss_pred -------hhccCCCchHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCcc---chhH
Q 041252 227 -------TNLMQPAKVSLLVDMLNEG-SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPN---GILP 295 (450)
Q Consensus 227 -------~~i~~~g~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~---~~~~ 295 (450)
+.|++.|++..|++.|.-+ ++.+...+..+|..|+-.++.++.+ .+.|++..|++++.+.+... ..+.
T Consensus 228 g~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I-~e~GGl~tl~~~i~d~n~~~~r~l~k~ 306 (461)
T KOG4199|consen 228 GQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSI-AESGGLDTLLRCIDDSNEQGNRTLAKT 306 (461)
T ss_pred chhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHH-HHccCHHHHHHHHhhhchhhHHHHHHH
Confidence 4567788999999999866 7888899999999999888877764 56788999999998843333 3468
Q ss_pred HHHHHHHhccChHHHHHHHhcCCHHHHHHhc--CCCChhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCC
Q 041252 296 GLSLLRSICLLNEVRSLVVSIGAVPQLVELL--PSLDPDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVS 372 (450)
Q Consensus 296 al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL--~~~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s 372 (450)
++..|+.|++++++|..||+.|+.+.++.++ .+.++.+.+.++.++..||- .|++-..+++ +|+-...|+.|..+.
T Consensus 307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~avqAmkahP 385 (461)
T KOG4199|consen 307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLAVQAMKAHP 385 (461)
T ss_pred HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHHHHHHHhCc
Confidence 8999999999999999999999999999998 45689999999999999994 5888888888 899999999999886
Q ss_pred --hHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252 373 --EDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL 432 (450)
Q Consensus 373 --~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~ 432 (450)
..++++|+..+.|+..++.++ +...+..|+ ..|+..-.+. ++..+..|...||-|.-
T Consensus 386 ~~a~vQrnac~~IRNiv~rs~~~-~~~~l~~Gi-E~Li~~A~~~-h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 386 VAAQVQRNACNMIRNIVVRSAEN-RTILLANGI-EKLIRTAKAN-HETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc-cchHHhccH-HHHHHHHHhc-CccHHHHHHHHHHhcCc
Confidence 478999999999999988644 345566665 7777777665 56667777778886543
No 16
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.72 E-value=6.8e-18 Score=125.46 Aligned_cols=63 Identities=49% Similarity=0.766 Sum_probs=60.2
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHH
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTW 132 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w 132 (450)
+|.||||+++|+|||+++|||+|||+||.+|+.. +.+||.|+++++.+++++|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 4789999999999999999999999999999987 67899999999999999999999999998
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.54 E-value=1e-13 Score=144.21 Aligned_cols=246 Identities=15% Similarity=0.150 Sum_probs=193.3
Q ss_pred hHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--Chhh
Q 041252 193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD--FRPE 269 (450)
Q Consensus 193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~--~~~~ 269 (450)
+|-.+.+|.+. +..++.+|..-|.+++..+ +.|..+.+-|+|+.||.+|.+.+.+++.+|+++|+||...++ .++.
T Consensus 235 lpe~i~mL~~q-~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 235 LPEVISMLMSQ-DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred cHHHHHHHhcc-ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 45667788765 7889999999999999855 677888889999999999999999999999999999975433 4777
Q ss_pred HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcC---C----C-------ChhHHH
Q 041252 270 IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLP---S----L-------DPDCLQ 335 (450)
Q Consensus 270 ~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~---~----~-------~~~~~~ 335 (450)
.+...++++.|+++|+...+.++++...++||||++++..|..|+.. ++..|-+-+- + + +..+..
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeee
Confidence 78889999999999998667889999999999999998888777764 4555555441 1 1 256788
Q ss_pred HHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhc------CChH----------------------------------
Q 041252 336 LALCILDALSS-LPEGKLALKDCANTIPNTVRLLMR------VSED---------------------------------- 374 (450)
Q Consensus 336 ~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~------~s~~---------------------------------- 374 (450)
++.++|+|+++ ..+.|+++.++.|.|..|+..+.+ .+.+
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 99999999987 589999999999999999988872 1122
Q ss_pred --------------------------------------------------------------HHHHHHHHHHHhcccCch
Q 041252 375 --------------------------------------------------------------CTQYALSILWSICKIAPE 392 (450)
Q Consensus 375 --------------------------------------------------------------~~e~A~~~L~~L~~~~~~ 392 (450)
+.|.++++|-||+.....
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 345555666666544321
Q ss_pred ---hHHHHH-HhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCcccc
Q 041252 393 ---ECSSAA-VDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFIS 441 (450)
Q Consensus 393 ---~~~~~~-~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~i~ 441 (450)
..+..+ .+.-+.+.|+.+++++ ++.+.+.++.+|++++.+.++...|.
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~rnk~lig 604 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDIRNKELIG 604 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCchhhhhhh
Confidence 122233 3455679999999999 67888999999999999988877776
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.52 E-value=7.5e-13 Score=125.19 Aligned_cols=197 Identities=16% Similarity=0.180 Sum_probs=166.9
Q ss_pred HhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh
Q 041252 188 VDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR 267 (450)
Q Consensus 188 ~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~ 267 (450)
.+.+-++.|+.+|+...+..+++.|+.++.+.+..+.++..|.+.|+++.+..+|..+++.+|+.|..+|.+++...+..
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 45667899999999777889999999999999999999999999999999999999999999999999999997665544
Q ss_pred hhHhhhhhHHHHHHHHHhc-CCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252 268 PEIVSSHRLLIGLMRLVKN-KRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS 346 (450)
Q Consensus 268 ~~~~~~~g~l~~Lv~lL~~-~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~ 346 (450)
.. +. ..++.+++...+ ..+..++.+++++|.||+..++.+..+. +.++.++++|.+++..++..++++|.||+.
T Consensus 89 ~~-Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 89 EQ-IK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HH-HH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 33 32 245666665444 3467788999999999998887877665 479999999999999999999999999999
Q ss_pred ChhhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccC
Q 041252 347 LPEGKLALKDCANTIPNTVRLLMRV-SEDCTQYALSILWSICKIA 390 (450)
Q Consensus 347 ~~e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~ 390 (450)
++.....+.. +.+...++.++.+. +......++..+.||..+-
T Consensus 164 np~~~~~Ll~-~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 164 NPDMTRELLS-AQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred CHHHHHHHHh-ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 9998888887 78999999998775 5677888888888886544
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.44 E-value=5.6e-12 Score=119.30 Aligned_cols=201 Identities=15% Similarity=0.167 Sum_probs=172.3
Q ss_pred hccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252 228 NLMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL 306 (450)
Q Consensus 228 ~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~ 306 (450)
.+.+++.++.|+.+|+. .++.+++.|..++.+.+.. +..+.++...|+++.+..+|.++ ++.++..|+.+|.|++.+
T Consensus 7 ~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 7 NILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVN 84 (254)
T ss_pred CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCC
Confidence 34678889999999995 5899999999999998654 46778889999999999999987 788999999999999999
Q ss_pred hHHHHHHHhcCCHHHHHHhcCCC--ChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252 307 NEVRSLVVSIGAVPQLVELLPSL--DPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW 384 (450)
Q Consensus 307 ~~~~~~iv~~G~v~~Lv~lL~~~--~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~ 384 (450)
.+|+..+-. .++.+.+.+.+. +.+++..++.+|.+|+..++.+..+.. .++.++++|..++..++.+++.+|.
T Consensus 85 ~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 85 DENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred hhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999887754 577777765443 678999999999999988888888754 7999999999999999999999999
Q ss_pred HhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCC
Q 041252 385 SICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDT 437 (450)
Q Consensus 385 ~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~ 437 (450)
+|+.+. ...+.++.+++...++.+++...+...-..+..+..+++.+++..
T Consensus 160 nLS~np--~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 160 NLSENP--DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HhccCH--HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 998865 456788888899999999988766777888999999998887654
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.38 E-value=2.6e-10 Score=119.20 Aligned_cols=283 Identities=20% Similarity=0.203 Sum_probs=224.6
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL 229 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i 229 (450)
..+.+...|.++++.+|..+++.|.+++.++......+.+.+.++.++.+|... +..+...|+.+|.+++.++.....+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHH
Confidence 455677788898999999999999999887776677788899999999999875 7899999999999999988888888
Q ss_pred cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHH
Q 041252 230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEV 309 (450)
Q Consensus 230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~ 309 (450)
..++.+..|..++...+..+|..+..++.+++..++.....+...|+++.++..|+++ +.-++.+++..|..|+..+.+
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-DiLvqlnalell~~La~~~~g 235 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-DILVQLNALELLSELAETPHG 235 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHcChhH
Confidence 8988899999999887889999999999999877777777778889999999999884 677888999999999999889
Q ss_pred HHHHHhcCCHHHHHHhcCC-----------------------------------------------CChhHHHHHHHHHH
Q 041252 310 RSLVVSIGAVPQLVELLPS-----------------------------------------------LDPDCLQLALCILD 342 (450)
Q Consensus 310 ~~~iv~~G~v~~Lv~lL~~-----------------------------------------------~~~~~~~~al~~L~ 342 (450)
...+.+.|+++.|+.++.+ .+...+..|+.+|.
T Consensus 236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg 315 (503)
T PF10508_consen 236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLG 315 (503)
T ss_pred HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 9999999988887777732 22334688899999
Q ss_pred HhcCChhhHHHH-hccCCChHHHHHHHhc----CChHHHHHHHHHHHHhcccCch----hH---HHHH---HhcChHH-H
Q 041252 343 ALSSLPEGKLAL-KDCANTIPNTVRLLMR----VSEDCTQYALSILWSICKIAPE----EC---SSAA---VDAGLAA-K 406 (450)
Q Consensus 343 ~L~~~~e~r~~i-~~~~g~i~~Lv~lL~~----~s~~~~e~A~~~L~~L~~~~~~----~~---~~~~---~~~G~i~-~ 406 (450)
.++++.+|+..+ ....+.++.+++.... ++...+-.++.+|.++-...++ +. .+.. ...+... .
T Consensus 316 ~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~ 395 (503)
T PF10508_consen 316 QIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNL 395 (503)
T ss_pred HHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHH
Confidence 999999999999 5545566666666544 4567888889998888433322 11 1111 1223333 4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhh-cC
Q 041252 407 LFLVIQSGCNPVLKQRSAELLKLCSLN-YT 435 (450)
Q Consensus 407 L~~ll~s~~~~~~k~~A~~lL~~ls~~-~~ 435 (450)
++.+++.+ =+++|-+|..+|+.+..+ |.
T Consensus 396 l~~~~~qP-F~elr~a~~~~l~~l~~~~Wg 424 (503)
T PF10508_consen 396 LMSLLKQP-FPELRCAAYRLLQALAAQPWG 424 (503)
T ss_pred HHHHhcCC-chHHHHHHHHHHHHHhcCHHH
Confidence 55666554 589999999999988776 54
No 21
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.30 E-value=2.2e-11 Score=132.09 Aligned_cols=226 Identities=18% Similarity=0.138 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHHHHcHHHHHHHHhh-CChHHHHhhhCCCCChhhHHHHHHHHHhcCCC--chhhhhccCCCchHHHHH
Q 041252 164 QARVQALKELHQIAAAHASARKTMVDE-GGVALISSLLGPFTSHAVGSEAVGVLVNLTLD--SESKTNLMQPAKVSLLVD 240 (450)
Q Consensus 164 ~~~~~Al~~L~~l~~~~~~~r~~i~~~-G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~ 240 (450)
..|..|+.+|.+|...+..||..+... |.+..+|.-|.+. .+++..--..+|+||+.. ...|+.+-+.|.+..|+.
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 378899999999999999999988865 7799999998775 678888899999999973 355677778899999888
Q ss_pred Hh-cCCCHHHHHHHHHHHHHHhccC-CChhhHhhhhhHHHHHHHHHhcC---CCccchhHHHHHHHHhc----cChHHHH
Q 041252 241 ML-NEGSVETKINCTRLIEKLMEEK-DFRPEIVSSHRLLIGLMRLVKNK---RHPNGILPGLSLLRSIC----LLNEVRS 311 (450)
Q Consensus 241 lL-~~~~~~~~~~aa~~L~~La~~~-~~~~~~~~~~g~l~~Lv~lL~~~---~~~~~~~~al~aL~~Ls----~~~~~~~ 311 (450)
.- .............+||||+... +.+++|-.-.|++..||.+|.-+ +.-.+++.+-++|+|.+ .++..|.
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 64 4445566777889999997543 44455556789999999999753 23456788999999987 4567888
Q ss_pred HHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc-CChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 041252 312 LVVSIGAVPQLVELLPSLDPDCLQLALCILDALS-SLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIA 390 (450)
Q Consensus 312 ~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~-~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 390 (450)
.+.+..++..|+..|.+.+..++-+++++|+||+ .+++.++.+.+ .|+++-|-.++.+......+-++.+|.||-.+.
T Consensus 525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD-~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWD-DGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHh-cccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 8889999999999999999999999999999998 56999999999 799999999999888888888999999997766
Q ss_pred c
Q 041252 391 P 391 (450)
Q Consensus 391 ~ 391 (450)
+
T Consensus 604 P 604 (2195)
T KOG2122|consen 604 P 604 (2195)
T ss_pred c
Confidence 4
No 22
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.29 E-value=2e-12 Score=87.00 Aligned_cols=39 Identities=33% Similarity=0.778 Sum_probs=31.2
Q ss_pred CcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCC---CCCCCc
Q 041252 72 CPISLEPMQDPVTLCTGQTYERSNILKWFSLGR---YTCPTT 110 (450)
Q Consensus 72 Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~---~~cP~~ 110 (450)
||||+++|+|||+++|||+||++||.+|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998632 469986
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.24 E-value=1.2e-10 Score=97.26 Aligned_cols=116 Identities=28% Similarity=0.327 Sum_probs=104.2
Q ss_pred hhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC-hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCh-
Q 041252 271 VSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL-NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLP- 348 (450)
Q Consensus 271 ~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~-~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~- 348 (450)
+.+.|+++.|++++.++ ++.++..++.+|.+++.. ++.+..+++.|+++.++.+|.+.++.++..|+++|.+|+..+
T Consensus 3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 34678899999999986 588999999999999976 889999999999999999999999999999999999999875
Q ss_pred hhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252 349 EGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK 388 (450)
Q Consensus 349 e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 388 (450)
..+..+.+ .|+++.+++++...+..+++.|+.+|++||.
T Consensus 82 ~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 55666676 7999999999999999999999999999873
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.23 E-value=2.9e-10 Score=94.88 Aligned_cols=117 Identities=26% Similarity=0.308 Sum_probs=105.7
Q ss_pred HHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 041252 312 LVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIA 390 (450)
Q Consensus 312 ~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 390 (450)
.+++.|+++.|+++|.+.+..+++.++.+|.+++.. ++.+..+.+ .|+++.++++|...++.+++.|+.+|++++...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 467899999999999999999999999999999987 888999888 799999999999999999999999999999877
Q ss_pred chhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252 391 PEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS 431 (450)
Q Consensus 391 ~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls 431 (450)
+ .....+.+.|+++.|+.+++.+ +..+++.|..+|..+.
T Consensus 81 ~-~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 E-DNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLA 119 (120)
T ss_pred H-HHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhh
Confidence 5 4456678899999999999887 7889999999998764
No 25
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.22 E-value=9.6e-10 Score=107.27 Aligned_cols=267 Identities=17% Similarity=0.117 Sum_probs=185.0
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCCh------hhHHHHHHHHHhcC--
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSH------AVGSEAVGVLVNLT-- 220 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~------~v~~~Al~~L~~Ls-- 220 (450)
+.++.|.+..++.+.++..+..++|.++|.++.++|..+.+.||-..++++|++..+. +...-+.+.|.|-.
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~ 166 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD 166 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence 4566677777777788999999999999999999999999999988888888753211 12222333333321
Q ss_pred --------------------------------------------------------------------------------
Q 041252 221 -------------------------------------------------------------------------------- 220 (450)
Q Consensus 221 -------------------------------------------------------------------------------- 220 (450)
T Consensus 167 ~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fe 246 (604)
T KOG4500|consen 167 SRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFE 246 (604)
T ss_pred cHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHH
Confidence
Q ss_pred ------CCchhhhhccCCCchHHHHHHhcC-CCH-------HHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhc
Q 041252 221 ------LDSESKTNLMQPAKVSLLVDMLNE-GSV-------ETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286 (450)
Q Consensus 221 ------~~~~~k~~i~~~g~i~~Lv~lL~~-~~~-------~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~ 286 (450)
.++..|-.+++.|.+..++.++.. .+. ..-..++....-|..++++.........++..+++.+.+
T Consensus 247 ila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S 326 (604)
T KOG4500|consen 247 ILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRS 326 (604)
T ss_pred HHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcC
Confidence 222233344445555555555543 111 111122222222334444544444444478888888888
Q ss_pred CCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcC-----CCChhHHHHHHHHHHHhcCChhhHHHHhccCCCh
Q 041252 287 KRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLP-----SLDPDCLQLALCILDALSSLPEGKLALKDCANTI 361 (450)
Q Consensus 287 ~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~-----~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i 361 (450)
. +.+.+-.+.-+|.|++..++++..+++.|.+..|+++|. +++.+.+..++++|+||..--.||..+.. +|..
T Consensus 327 ~-d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~-aGvt 404 (604)
T KOG4500|consen 327 D-DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAP-AGVT 404 (604)
T ss_pred C-chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccc-cchH
Confidence 6 577888899999999999999999999999999999993 35789999999999999988889999998 9999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCH
Q 041252 362 PNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNP 417 (450)
Q Consensus 362 ~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~ 417 (450)
+.++..+...++.++..-.+.|.-+-...+.-..+..-..-.+..|++.-.+....
T Consensus 405 eaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~a 460 (604)
T KOG4500|consen 405 EAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFA 460 (604)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccc
Confidence 99999999999999888888877664433211222222345677777777665333
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.16 E-value=3.3e-11 Score=119.51 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=64.5
Q ss_pred CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhc
Q 041252 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQK 136 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~ 136 (450)
.+...|.||||+++|.+||+++|||+||..||.+|+.. ...||.|+..+....+.+|..|.++|+.|....
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 56678999999999999999999999999999999986 568999999998888999999999999997643
No 27
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.14 E-value=2.7e-11 Score=107.45 Aligned_cols=60 Identities=23% Similarity=0.444 Sum_probs=51.8
Q ss_pred cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc---------------CCCCCCCcCCcCCCCCCcchH
Q 041252 64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL---------------GRYTCPTTMQELWDDSVTPNK 123 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~---------------~~~~cP~~~~~l~~~~l~~n~ 123 (450)
.+..++|.||||.+.++|||++.|||.||+.||.+|+.. +...||.|+.+++...++|..
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 455678999999999999999999999999999999852 235799999999888888864
No 28
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.14 E-value=5.1e-09 Score=103.15 Aligned_cols=250 Identities=18% Similarity=0.214 Sum_probs=168.6
Q ss_pred HHHHHHHHHcHHHHHHHHhhCC---hHHHHhhhCCC-CChhhHHHHHHHHHhcCCCchhhh-hccC------CCchHHHH
Q 041252 171 KELHQIAAAHASARKTMVDEGG---VALISSLLGPF-TSHAVGSEAVGVLVNLTLDSESKT-NLMQ------PAKVSLLV 239 (450)
Q Consensus 171 ~~L~~l~~~~~~~r~~i~~~G~---i~~Lv~lL~~~-~~~~v~~~Al~~L~~Ls~~~~~k~-~i~~------~g~i~~Lv 239 (450)
..++.+-+.....|..+.+..+ +..++.+|+.. .+.++....+..+..+..++..+. .+.. .....+++
T Consensus 32 ~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl 111 (312)
T PF03224_consen 32 SLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFL 111 (312)
T ss_dssp HHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHH
Confidence 3334444433444544555433 56777777654 577888999999988655554443 3322 23688888
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCC---CccchhHHHHHHHHhccChHHHHHHHhc
Q 041252 240 DMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKR---HPNGILPGLSLLRSICLLNEVRSLVVSI 316 (450)
Q Consensus 240 ~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~---~~~~~~~al~aL~~Ls~~~~~~~~iv~~ 316 (450)
.++.+++..++..|+.+|..|....+...... ..+.++.++.++++.. +.+.+..++.+|.+|...++.|..+.+.
T Consensus 112 ~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~ 190 (312)
T PF03224_consen 112 KLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS 190 (312)
T ss_dssp HH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc
Confidence 99999999999999999999976554433221 2567888888887621 2345688999999999999999999999
Q ss_pred CCHHHHHHhc------CC-CChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHHHHHHhcc
Q 041252 317 GAVPQLVELL------PS-LDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV-SEDCTQYALSILWSICK 388 (450)
Q Consensus 317 G~v~~Lv~lL------~~-~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~ 388 (450)
|+++.|+.+| .. .+..++-.++.+++.|+-+++....+.. .+.|+.|++++... .+++.+-++++|.|+..
T Consensus 191 ~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 191 NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 9999999999 22 2578899999999999999999999988 57999999999775 58999999999999999
Q ss_pred cCchhHHHHHHhcChHHHHHHHHHc-CCCHHHHHH
Q 041252 389 IAPEECSSAAVDAGLAAKLFLVIQS-GCNPVLKQR 422 (450)
Q Consensus 389 ~~~~~~~~~~~~~G~i~~L~~ll~s-~~~~~~k~~ 422 (450)
.+++.....|+..|+.+.+-.+... -+++++.+-
T Consensus 270 ~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 270 KAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp SSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred ccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 8876677888999886666555532 245666554
No 29
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.12 E-value=4.4e-09 Score=102.75 Aligned_cols=281 Identities=12% Similarity=0.077 Sum_probs=203.8
Q ss_pred HHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChh-------hHHHHHHHHHhcCCCc
Q 041252 152 SELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHA-------VGSEAVGVLVNLTLDS 223 (450)
Q Consensus 152 ~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~-------v~~~Al~~L~~Ls~~~ 223 (450)
..+++.+.+. .++.+.-....|...+ +++..+-.+++.|.+.-++.+++...+.. .-..+......|...+
T Consensus 226 ~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD 304 (604)
T KOG4500|consen 226 FMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD 304 (604)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc
Confidence 3455555443 2333333344444444 56678889999999999998887521111 1223444555556667
Q ss_pred hhhhhccC-CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcC----CCccchhHHHH
Q 041252 224 ESKTNLMQ-PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNK----RHPNGILPGLS 298 (450)
Q Consensus 224 ~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~----~~~~~~~~al~ 298 (450)
++...+.. +..+..++..+.|.+....-.++-+|.|++..++.+.. +.+.+++..|+++|..+ ++...+.+++.
T Consensus 305 eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~-~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ls 383 (604)
T KOG4500|consen 305 ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQ-LVQKDFLNKLISCLMQEKDVDGNVERQHACLS 383 (604)
T ss_pred hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHH-HHHHHHHHHHHHHHHHhcCCCccchhHHHHHH
Confidence 77666655 45999999999999999999999999999988776554 56789999999998652 34566789999
Q ss_pred HHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh-hHHHHhccCCChHHHHHHHhcCChH-HH
Q 041252 299 LLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPE-GKLALKDCANTIPNTVRLLMRVSED-CT 376 (450)
Q Consensus 299 aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e-~r~~i~~~~g~i~~Lv~lL~~~s~~-~~ 376 (450)
||+||.....||..+..+|++++++..+....+.++..-++.|+.+-...+ .-.++.++..-+..||++-.+.+.. +.
T Consensus 384 ALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~ 463 (604)
T KOG4500|consen 384 ALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVA 463 (604)
T ss_pred HHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhh
Confidence 999999999999999999999999999999999999999999998887654 5556666555667777775554433 55
Q ss_pred HHHHHHHHHhcccCch-hHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252 377 QYALSILWSICKIAPE-ECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT 435 (450)
Q Consensus 377 e~A~~~L~~L~~~~~~-~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~ 435 (450)
-...+.|..+-+++.. .....+.+.|++..++.++.+. +-..+..|...|-..+.-|-
T Consensus 464 gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~-hi~mqnEalVal~~~~~~yl 522 (604)
T KOG4500|consen 464 GESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKN-HINMQNEALVALLSTESKYL 522 (604)
T ss_pred hhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHh-hHHHhHHHHHHHHHHHHHhc
Confidence 5566777777777532 3445566889999999998776 55667777666666555543
No 30
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.11 E-value=1.1e-08 Score=106.93 Aligned_cols=247 Identities=14% Similarity=0.118 Sum_probs=189.5
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCC
Q 041252 154 LLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPA 233 (450)
Q Consensus 154 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g 233 (450)
++..|... ..+..++..|.......+ ..+....+.+...|... +.+....++.+|..+-........ ..+
T Consensus 8 ~l~~l~~~--~~~~~~L~~l~~~~~~~~-----~l~~~~~~~lf~~L~~~-~~e~v~~~~~iL~~~l~~~~~~~l--~~~ 77 (503)
T PF10508_consen 8 LLEELSSK--AERLEALPELKTELSSSP-----FLERLPEPVLFDCLNTS-NREQVELICDILKRLLSALSPDSL--LPQ 77 (503)
T ss_pred HHHHHhcc--cchHHHHHHHHHHHhhhh-----HHHhchHHHHHHHHhhc-ChHHHHHHHHHHHHHHhccCHHHH--HHH
Confidence 34444433 345556666655433222 11111123377778765 455556677777664433222222 567
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHH
Q 041252 234 KVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLV 313 (450)
Q Consensus 234 ~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~i 313 (450)
..+.|...|.+.++.+|..++..|.+++..++.....+...++++.++.++.++ +..+.+.|..+|.+|+.++.....+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHH
Confidence 789999999999999999999999999877766667778889999999999886 6888999999999999988888888
Q ss_pred HhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCch
Q 041252 314 VSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPE 392 (450)
Q Consensus 314 v~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 392 (450)
.+.+.+..|..++...+..++-.+..++..++.. ++....+.+ .|.++.+++.+.+.+.-++.+|+.+|..++...
T Consensus 157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~eL~~dDiLvqlnalell~~La~~~-- 233 (503)
T PF10508_consen 157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKELDSDDILVQLNALELLSELAETP-- 233 (503)
T ss_pred hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh--
Confidence 8999999999999887888999999999999865 667777777 899999999999977889999999999999933
Q ss_pred hHHHHHHhcChHHHHHHHHHcC
Q 041252 393 ECSSAAVDAGLAAKLFLVIQSG 414 (450)
Q Consensus 393 ~~~~~~~~~G~i~~L~~ll~s~ 414 (450)
.....+.+.|+++.|..++...
T Consensus 234 ~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 234 HGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred hHHHHHHhCCHHHHHHHHHhcc
Confidence 4456778899999999999654
No 31
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.96 E-value=4.1e-10 Score=74.78 Aligned_cols=38 Identities=32% Similarity=0.715 Sum_probs=33.4
Q ss_pred CcCCCCCCCCC-eeCCCCCcccHHHHHHHHhcCCCCCCCc
Q 041252 72 CPISLEPMQDP-VTLCTGQTYERSNILKWFSLGRYTCPTT 110 (450)
Q Consensus 72 Cpi~~~~m~dP-v~~~~g~ty~r~~I~~~~~~~~~~cP~~ 110 (450)
||||.+.++|| ++++|||+||++||++|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 6889986
No 32
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=4.8e-08 Score=96.67 Aligned_cols=257 Identities=16% Similarity=0.137 Sum_probs=180.8
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM 230 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~ 230 (450)
+..||+.|...+.+.-.-..+.|..++-- .+||..+.+.|.|+.|+++.... ..+.+...+..|.|||.+...+..++
T Consensus 306 V~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~-h~dL~~~tl~LlfNlSFD~glr~KMv 383 (791)
T KOG1222|consen 306 VAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQ-HPDLRKATLMLLFNLSFDSGLRPKMV 383 (791)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCC-CHHHHHHHHHHhhhccccccccHHHh
Confidence 55677778777777777777888888755 45999999999999999998765 67899999999999999999999999
Q ss_pred CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHH
Q 041252 231 QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR 310 (450)
Q Consensus 231 ~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~ 310 (450)
+.|.+|.|+.+|.++.. ..-|...|+.++.+++. +..+....+++.|++.+-.+.+..+-.+....-.|||.+..|.
T Consensus 384 ~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~-K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNa 460 (791)
T KOG1222|consen 384 NGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDA-KAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNA 460 (791)
T ss_pred hccchHHHHHHhCCccc--chhhhhhhhhhccCcHH-HHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccc
Confidence 99999999999987543 23567788888665543 4456677888999887766544444333333334555555444
Q ss_pred HHHHhcCC-------------------------------------HHHHHHhcCC-CChhHHHHHHHHHHHhcCChhhHH
Q 041252 311 SLVVSIGA-------------------------------------VPQLVELLPS-LDPDCLQLALCILDALSSLPEGKL 352 (450)
Q Consensus 311 ~~iv~~G~-------------------------------------v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~e~r~ 352 (450)
..+++-.+ |.-|...+.. .+++..-.++++|+||...+-...
T Consensus 461 QlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~ 540 (791)
T KOG1222|consen 461 QLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWA 540 (791)
T ss_pred eEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHH
Confidence 43333222 2333444432 245567789999999998888888
Q ss_pred HHhccCCChHHHHHHHhcCC--hHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcC
Q 041252 353 ALKDCANTIPNTVRLLMRVS--EDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSG 414 (450)
Q Consensus 353 ~i~~~~g~i~~Lv~lL~~~s--~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~ 414 (450)
.+......+|-+-..|..+- ....-..+-++..++.. ..++.....+|+++.|+.++++.
T Consensus 541 ~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d--~~cA~Lla~a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 541 KILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD--LDCARLLAPAKLIDTLIELLQAC 602 (791)
T ss_pred HHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh--hHHHHHhCccccHHHHHHHHHhh
Confidence 88877889999988887653 22222222222222222 24666667899999999999764
No 33
>PRK09687 putative lyase; Provisional
Probab=98.93 E-value=1.4e-07 Score=91.13 Aligned_cols=227 Identities=13% Similarity=0.108 Sum_probs=103.7
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM 230 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~ 230 (450)
++.|+..|.+.+..+|..|+..|..+-. ...++.+..++.+. +..++..|+++|..|...+..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSK-NPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCccc-----
Confidence 4456666666666666666666654421 11234444555443 455555566665554432211
Q ss_pred CCCchHHHHHH-hcCCCHHHHHHHHHHHHHHhccCCCh-hhH-------------------------hhhhhHHHHHHHH
Q 041252 231 QPAKVSLLVDM-LNEGSVETKINCTRLIEKLMEEKDFR-PEI-------------------------VSSHRLLIGLMRL 283 (450)
Q Consensus 231 ~~g~i~~Lv~l-L~~~~~~~~~~aa~~L~~La~~~~~~-~~~-------------------------~~~~g~l~~Lv~l 283 (450)
....++.|..+ ++..++.+|..|+.+|.++....... ... +.....++.|+.+
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~ 167 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINL 167 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 12234555544 33445555656666555553211100 000 0011133444444
Q ss_pred HhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHH
Q 041252 284 VKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPN 363 (450)
Q Consensus 284 L~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~ 363 (450)
|+++ ++.++..|+.+|..+....+ .+++.|+.+|.+.+..++..|+.+|..+-. ..+||.
T Consensus 168 L~d~-~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-----------~~av~~ 227 (280)
T PRK09687 168 LKDP-NGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDKNEEIRIEAIIGLALRKD-----------KRVLSV 227 (280)
T ss_pred hcCC-CHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCCChHHHHHHHHHHHccCC-----------hhHHHH
Confidence 4433 33444444444444421111 223344445544445555555544443211 234555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041252 364 TVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLK 428 (450)
Q Consensus 364 Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~ 428 (450)
|++.|..+. +...|+.+|..+.. .-+++.|..++....++.++.+|.+.|+
T Consensus 228 Li~~L~~~~--~~~~a~~ALg~ig~------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 228 LIKELKKGT--VGDLIIEAAGELGD------------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHcCCc--hHHHHHHHHHhcCC------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 555555433 23334444333321 1256777777763337777777777665
No 34
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.92 E-value=3.1e-10 Score=81.42 Aligned_cols=44 Identities=36% Similarity=0.785 Sum_probs=31.4
Q ss_pred CeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhc-CCCCCCCcC
Q 041252 68 SVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSL-GRYTCPTTM 111 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~-~~~~cP~~~ 111 (450)
..++||||++.|+|||.- .|||+|+|++|.+|+.. +...||+.+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 468999999999999985 79999999999999954 345699965
No 35
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.87 E-value=9.9e-10 Score=73.82 Aligned_cols=36 Identities=31% Similarity=0.701 Sum_probs=23.3
Q ss_pred CcCCCCCCCC----CeeCCCCCcccHHHHHHHHhcC---CCCCC
Q 041252 72 CPISLEPMQD----PVTLCTGQTYERSNILKWFSLG---RYTCP 108 (450)
Q Consensus 72 Cpi~~~~m~d----Pv~~~~g~ty~r~~I~~~~~~~---~~~cP 108 (450)
||||.+ |.+ |++++|||+||++||+++++.+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999864 34577
No 36
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.1e-06 Score=91.89 Aligned_cols=271 Identities=16% Similarity=0.190 Sum_probs=199.5
Q ss_pred hcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCC-CCChhhHHHHHHHHHhcCCCch--
Q 041252 149 GRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGP-FTSHAVGSEAVGVLVNLTLDSE-- 224 (450)
Q Consensus 149 ~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~-~~~~~v~~~Al~~L~~Ls~~~~-- 224 (450)
..|+.|++.+.+. -.+.|+.|+..|..+++ .+|..+...| .++|+..|.. ..|.++...++.+++++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 4678888888664 35789999999999986 4888887776 7888998875 3477899999999999765442
Q ss_pred -----hh----------hh-ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC--CChhhHhhhhhHHHHHHHHHhc
Q 041252 225 -----SK----------TN-LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK--DFRPEIVSSHRLLIGLMRLVKN 286 (450)
Q Consensus 225 -----~k----------~~-i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~--~~~~~~~~~~g~l~~Lv~lL~~ 286 (450)
.+ .. |...+-|..++..+..-+..+|..+..+|.+|.+.. +.+..++...-+|..||.+|.+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 22 12 335788999999999999999999999999996543 2334445667789999999998
Q ss_pred CCCccchhHHHHHHHHhccChHHHHHHHh-cCCHHHHHHhcCCC----ChhHHHHHHHHHHHhcCC-hhhHHHHhccCCC
Q 041252 287 KRHPNGILPGLSLLRSICLLNEVRSLVVS-IGAVPQLVELLPSL----DPDCLQLALCILDALSSL-PEGKLALKDCANT 360 (450)
Q Consensus 287 ~~~~~~~~~al~aL~~Ls~~~~~~~~iv~-~G~v~~Lv~lL~~~----~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~ 360 (450)
. +..++-.++-.|..|..+.....++|. .++...|..++... ..-+.+.|+..|-||-.+ ..|+.-|.+ .+-
T Consensus 178 s-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE-~~~ 255 (970)
T KOG0946|consen 178 S-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE-GSY 255 (970)
T ss_pred h-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc-ccc
Confidence 6 466778888899999977777777776 78999999999543 236899999999999865 678888888 799
Q ss_pred hHHHHHHHhcC---C-------h-H--HHHHHHHHHHHhcccCch-----hHHHHHHhcChHHHHHHHHHcCCC-HHHHH
Q 041252 361 IPNTVRLLMRV---S-------E-D--CTQYALSILWSICKIAPE-----ECSSAAVDAGLAAKLFLVIQSGCN-PVLKQ 421 (450)
Q Consensus 361 i~~Lv~lL~~~---s-------~-~--~~e~A~~~L~~L~~~~~~-----~~~~~~~~~G~i~~L~~ll~s~~~-~~~k~ 421 (450)
||.|.++|... . . + ..-.|+.++..+...... .+++.+...+++..|+.++-+... .++..
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 99999888642 1 1 1 123355555555443311 234566688999999988755423 34444
Q ss_pred HHHH
Q 041252 422 RSAE 425 (450)
Q Consensus 422 ~A~~ 425 (450)
-++.
T Consensus 336 esii 339 (970)
T KOG0946|consen 336 ESII 339 (970)
T ss_pred HHHH
Confidence 4443
No 37
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.79 E-value=4.3e-09 Score=70.72 Aligned_cols=39 Identities=44% Similarity=0.957 Sum_probs=36.0
Q ss_pred CcCCCCCCCCCe-eCCCCCcccHHHHHHHHh-cCCCCCCCc
Q 041252 72 CPISLEPMQDPV-TLCTGQTYERSNILKWFS-LGRYTCPTT 110 (450)
Q Consensus 72 Cpi~~~~m~dPv-~~~~g~ty~r~~I~~~~~-~~~~~cP~~ 110 (450)
||||.+.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999999 556779986
No 38
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=8.2e-09 Score=93.92 Aligned_cols=75 Identities=27% Similarity=0.370 Sum_probs=70.3
Q ss_pred ccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252 63 LAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY 137 (450)
Q Consensus 63 ~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~ 137 (450)
..++|+..+|.|+.++|+|||+.++|-||+|..|++++.+-..+.|.|+.+++...++||.+|+..|..|...|.
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~ 279 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENE 279 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcc
Confidence 469999999999999999999999999999999999999766679999999999999999999999999998875
No 39
>PRK09687 putative lyase; Provisional
Probab=98.74 E-value=4.8e-07 Score=87.46 Aligned_cols=198 Identities=15% Similarity=0.069 Sum_probs=119.9
Q ss_pred hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhh
Q 041252 193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVS 272 (450)
Q Consensus 193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~ 272 (450)
++.|...|.+. +..++..|+.+|..+. ....++.+..++.++++.+|..|+++|..|......
T Consensus 25 ~~~L~~~L~d~-d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------ 87 (280)
T PRK09687 25 DDELFRLLDDH-NSLKRISSIRVLQLRG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------ 87 (280)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------
Confidence 67888999775 7789999999998654 356688889999999999999999999998532211
Q ss_pred hhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH--------------------HHHHHHh-------cCCHHHHHHh
Q 041252 273 SHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE--------------------VRSLVVS-------IGAVPQLVEL 325 (450)
Q Consensus 273 ~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~--------------------~~~~iv~-------~G~v~~Lv~l 325 (450)
....++.|..++....++.++..++.+|.+++.... .|...+. ..+++.|+.+
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~ 167 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINL 167 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 223567777774443467888899999998863221 1211111 1134445555
Q ss_pred cCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHH
Q 041252 326 LPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAA 405 (450)
Q Consensus 326 L~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~ 405 (450)
|.+.+..++..|+.+|..+... ...+++.|++.|...+..++..|+.+|..+ .. .-+++
T Consensus 168 L~d~~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~---~~---------~~av~ 226 (280)
T PRK09687 168 LKDPNGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQDKNEEIRIEAIIGLALR---KD---------KRVLS 226 (280)
T ss_pred hcCCCHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcCCChHHHHHHHHHHHcc---CC---------hhHHH
Confidence 5444445555555555444110 123444555555555555555555444332 11 13567
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252 406 KLFLVIQSGCNPVLKQRSAELLKLCS 431 (450)
Q Consensus 406 ~L~~ll~s~~~~~~k~~A~~lL~~ls 431 (450)
.|+..++++ . .+..|...|..+.
T Consensus 227 ~Li~~L~~~-~--~~~~a~~ALg~ig 249 (280)
T PRK09687 227 VLIKELKKG-T--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHHcCC-c--hHHHHHHHHHhcC
Confidence 777777765 2 3455555555443
No 40
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=1.9e-06 Score=85.61 Aligned_cols=256 Identities=15% Similarity=0.109 Sum_probs=177.6
Q ss_pred HHHHHHHhhc---cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhh
Q 041252 151 ASELLGTLKK---VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT 227 (450)
Q Consensus 151 i~~Lv~~L~~---~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~ 227 (450)
++.+.+.++- .++..-..|+--|.+++.+ -..-..++..+.|..|+..|... +.+..-..+..|..||...+||.
T Consensus 262 ~dr~~kklk~~~~KQeqLLrva~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~eNK~ 339 (791)
T KOG1222|consen 262 IDRLNKKLKTAIRKQEQLLRVAVYLLLNLAED-ISVELKMRRKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDENKI 339 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhccchH
Confidence 4444444432 2334445577778888853 33445667778899999999875 56777788899999999999999
Q ss_pred hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252 228 NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN 307 (450)
Q Consensus 228 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~ 307 (450)
.+.+.|.+..|+++.....++.+.....+|.||+-+...+.. +...|.+|.|+.+|.+.. -..-|+..|+.++.++
T Consensus 340 ~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K-Mv~~GllP~l~~ll~~d~---~~~iA~~~lYh~S~dD 415 (791)
T KOG1222|consen 340 VMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK-MVNGGLLPHLASLLDSDT---KHGIALNMLYHLSCDD 415 (791)
T ss_pred HHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH-HhhccchHHHHHHhCCcc---cchhhhhhhhhhccCc
Confidence 999999999999999999999999999999999877655544 567899999999997753 3456888999999999
Q ss_pred HHHHHHHhcCCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCChhhHHHHhccCCCh-------------------------
Q 041252 308 EVRSLVVSIGAVPQLVELLPSL-DPDCLQLALCILDALSSLPEGKLALKDCANTI------------------------- 361 (450)
Q Consensus 308 ~~~~~iv~~G~v~~Lv~lL~~~-~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i------------------------- 361 (450)
..+..+.--.+|+.+...+-++ +.++-...++.--|||.+..|.+.+++ ..|+
T Consensus 416 ~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvce-GqgL~~LM~ra~k~~D~lLmK~vRniSqH 494 (791)
T KOG1222|consen 416 DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCE-GQGLDLLMERAIKSRDLLLMKVVRNISQH 494 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEec-CcchHHHHHHHhcccchHHHHHHHHhhhc
Confidence 9999999999999998887443 333333223222355554433333333 2232
Q ss_pred ------------HHHHHHHhcC-ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcC
Q 041252 362 ------------PNTVRLLMRV-SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSG 414 (450)
Q Consensus 362 ------------~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~ 414 (450)
..|...+... ++..--.++++|.+|.--+- .......+...+|.+-..++.|
T Consensus 495 eg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl-dw~~ilq~~~LvPw~k~~L~pg 559 (791)
T KOG1222|consen 495 EGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL-DWAKILQSENLVPWMKTQLQPG 559 (791)
T ss_pred cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC-CHHHHHhhccccHHHHHhhcCC
Confidence 2333333332 23334456777777765332 2344445678888888887766
No 41
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.73 E-value=3.7e-09 Score=75.88 Aligned_cols=57 Identities=21% Similarity=0.431 Sum_probs=32.5
Q ss_pred eeCcCCCCCCCCCee-CCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHH
Q 041252 70 FVCPISLEPMQDPVT-LCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLI 129 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I 129 (450)
+.|++|.++|++||. ..|.|.||+.||.+.+.. .||+|+.+-+..++.-|+.|.++|
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 579999999999996 579999999999886543 399999999999999999998876
No 42
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.71 E-value=1.1e-05 Score=81.79 Aligned_cols=242 Identities=14% Similarity=0.075 Sum_probs=174.3
Q ss_pred CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhh-hccC-----CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC
Q 041252 191 GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT-NLMQ-----PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK 264 (450)
Q Consensus 191 G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~-~i~~-----~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~ 264 (450)
..+..++.+|+.....++....+..+..+..++..+. .+.+ +....+.+.+|.+++.-+...|..+|..|....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 3467788888776567888888888888665554443 2322 466788888998889999999999999986543
Q ss_pred CChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCC--ChhHHHHHHHHHH
Q 041252 265 DFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSL--DPDCLQLALCILD 342 (450)
Q Consensus 265 ~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~--~~~~~~~al~~L~ 342 (450)
.....-....-.+.-|...++...+...+..++.+|.+|...++.|..+.+.++++.|+.+|+.. +..++-.++-+++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 22211111111233444555544346677888899999999999999999999999999999653 5688999999999
Q ss_pred HhcCChhhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccC-----chhHHHHHHhcChHHHHHHHHHc-CC
Q 041252 343 ALSSLPEGKLALKDCANTIPNTVRLLMRV-SEDCTQYALSILWSICKIA-----PEECSSAAVDAGLAAKLFLVIQS-GC 415 (450)
Q Consensus 343 ~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~-----~~~~~~~~~~~G~i~~L~~ll~s-~~ 415 (450)
.|+=+++....+.. .+.|+.+++++... .+++.+-++.+|.|+...+ .......++..|+.+.+-.+... -+
T Consensus 213 lLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~ 291 (429)
T cd00256 213 LLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD 291 (429)
T ss_pred HHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence 99988887777766 79999999999875 4789999999999998754 11345667788885544444432 24
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 041252 416 NPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 416 ~~~~k~~A~~lL~~ls~~ 433 (450)
++++.+--..+-..+..+
T Consensus 292 DedL~edl~~L~e~L~~~ 309 (429)
T cd00256 292 DEDLTDDLKFLTEELKNS 309 (429)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 567776666666666655
No 43
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.69 E-value=1.4e-08 Score=94.23 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=41.9
Q ss_pred CCCCeeeCcCCCCCCCCC--------eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 65 EIPSVFVCPISLEPMQDP--------VTLCTGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dP--------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
....+..||||++.+.+| ++.+|||+||+.||.+|+.. +.+||+||.++.
T Consensus 170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 345578999999987764 56689999999999999986 789999998764
No 44
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.69 E-value=3.4e-06 Score=85.30 Aligned_cols=281 Identities=14% Similarity=0.095 Sum_probs=189.3
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM 230 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~ 230 (450)
....+..|...+.-....|+..|..+...+..+.......-....|...|++..+...+.-++..|..|...++.|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 34566677776667888888888888754332211111111234555666554345677788889999999999999998
Q ss_pred CCCchHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh-
Q 041252 231 QPAKVSLLVDMLNEG--SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN- 307 (450)
Q Consensus 231 ~~g~i~~Lv~lL~~~--~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~- 307 (450)
+.++++.|+.+|+.. +.+.+-++.-+++-|+-..+ ..+.....+.++.|+.+++...-..+.+-++.+|+||....
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~ 261 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV 261 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence 888999999999753 56889999999999976554 34455667899999999997655678889999999998532
Q ss_pred ------HHHHHHHhcCCHHHHHHhcCC--CChhHHHHHHHH-------HHHhcCCh------------------------
Q 041252 308 ------EVRSLVVSIGAVPQLVELLPS--LDPDCLQLALCI-------LDALSSLP------------------------ 348 (450)
Q Consensus 308 ------~~~~~iv~~G~v~~Lv~lL~~--~~~~~~~~al~~-------L~~L~~~~------------------------ 348 (450)
.....|++.|..+.+-.+... +|+++.+.--.+ +..+++-+
T Consensus 262 ~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~ 341 (429)
T cd00256 262 DREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR 341 (429)
T ss_pred ccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence 245677777776654444422 355554433222 23333323
Q ss_pred hhHHHHhccC-CChHHHHHHHhc-CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHH
Q 041252 349 EGKLALKDCA-NTIPNTVRLLMR-VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAEL 426 (450)
Q Consensus 349 e~r~~i~~~~-g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~l 426 (450)
||-..+.++. ..+..|+++|.. .++.+..-|+.=+..++++.|. .+..+-+-|+=..++.+|.+. ++.+|..|...
T Consensus 342 EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~-gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL~a 419 (429)
T cd00256 342 ENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR-GKDVVEQLGGKQRVMRLLNHE-DPNVRYEALLA 419 (429)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc-HHHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHH
Confidence 3444444421 246788888843 3456666677777777887763 234444678888899999987 78899998876
Q ss_pred HHHH-Hhhc
Q 041252 427 LKLC-SLNY 434 (450)
Q Consensus 427 L~~l-s~~~ 434 (450)
+..+ ..||
T Consensus 420 vQklm~~~w 428 (429)
T cd00256 420 VQKLMVHNW 428 (429)
T ss_pred HHHHHHhcC
Confidence 6654 4445
No 45
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.66 E-value=3.4e-07 Score=90.22 Aligned_cols=214 Identities=14% Similarity=0.156 Sum_probs=148.8
Q ss_pred HHHHHhhc--cchHHHHHHHHHHHHHHHHcHHHHHHHHhh------CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCch
Q 041252 153 ELLGTLKK--VKGQARVQALKELHQIAAAHASARKTMVDE------GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSE 224 (450)
Q Consensus 153 ~Lv~~L~~--~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~------G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~ 224 (450)
-++..|+. .+.+.....+..+..+..+++...+.+.+. ....++++++.+. |.-++..|+.+|..|.....
T Consensus 59 ~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~ 137 (312)
T PF03224_consen 59 LFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGP 137 (312)
T ss_dssp ---HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCC
Confidence 34444443 356777888888888888887666666652 2467888888775 78899999999999765443
Q ss_pred hhhhccCCCchHHHHHHhcC----CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHH------hcCCCccchh
Q 041252 225 SKTNLMQPAKVSLLVDMLNE----GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLV------KNKRHPNGIL 294 (450)
Q Consensus 225 ~k~~i~~~g~i~~Lv~lL~~----~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL------~~~~~~~~~~ 294 (450)
.+..-...+.++.++..|.+ .+.+.+..|+.+|.+|...++.+. .+...++++.|+.++ ........+-
T Consensus 138 ~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~-~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y 216 (312)
T PF03224_consen 138 KRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ-VFWKSNGVSPLFDILRKQATNSNSSGIQLQY 216 (312)
T ss_dssp T--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH-HHHTHHHHHHHHHHHH---------HHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH-HHHhcCcHHHHHHHHHhhcccCCCCchhHHH
Confidence 33222225667888888765 345667889999999987766554 456688899999999 2222344556
Q ss_pred HHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCChh--hHHHHhccCCChHHHHHHHhc
Q 041252 295 PGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSL-DPDCLQLALCILDALSSLPE--GKLALKDCANTIPNTVRLLMR 370 (450)
Q Consensus 295 ~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~-~~~~~~~al~~L~~L~~~~e--~r~~i~~~~g~i~~Lv~lL~~ 370 (450)
.++-++|-|+.+++....+...+.|+.|+++++.. .+++..-++++|.||...+. ....++. ++++.+++.|..
T Consensus 217 ~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~--~~~l~~l~~L~~ 293 (312)
T PF03224_consen 217 QALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL--CGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH--H-HHHHHHHHHS
T ss_pred HHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH--ccHHHHHHHHhc
Confidence 89999999999999999999999999999999654 68999999999999998865 7888887 445555555544
No 46
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=9.3e-07 Score=85.58 Aligned_cols=183 Identities=15% Similarity=0.123 Sum_probs=149.9
Q ss_pred ChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHH
Q 041252 205 SHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLV 284 (450)
Q Consensus 205 ~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL 284 (450)
+.+-++.|+.-|..+..+=+|-..+...|+..+++..|++.+.++|+.|+++|...+.+|....+.+.+.|+++.|+..|
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 55667778888888887778888999999999999999999999999999999999999988888888889999999999
Q ss_pred hcCCCccchhHHHHHHHHhcc-ChHHHHHHHhcCCHHHHHHhcCC--CChhHHHHHHHHHHHhcCCh-hhHHHHhccCCC
Q 041252 285 KNKRHPNGILPGLSLLRSICL-LNEVRSLVVSIGAVPQLVELLPS--LDPDCLQLALCILDALSSLP-EGKLALKDCANT 360 (450)
Q Consensus 285 ~~~~~~~~~~~al~aL~~Ls~-~~~~~~~iv~~G~v~~Lv~lL~~--~~~~~~~~al~~L~~L~~~~-e~r~~i~~~~g~ 360 (450)
.+..+..++..|+.|+.+|-. ++.....+...++...|..+|.+ .+...+..++..+..|.... ..+..+.. .+.
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~-~~f 254 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS-LGF 254 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH-hhh
Confidence 976545556889999998885 45677888889999999999988 56888999999999998653 33443333 566
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252 361 IPNTVRLLMRVSEDCTQYALSILWSICK 388 (450)
Q Consensus 361 i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 388 (450)
-..++.+.......+.++++.++..+-.
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 6666667677778889988888776544
No 47
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.5e-08 Score=91.69 Aligned_cols=57 Identities=26% Similarity=0.502 Sum_probs=50.7
Q ss_pred CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc--CCCCCCCcCCcCCCCCCcchH
Q 041252 67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL--GRYTCPTTMQELWDDSVTPNK 123 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~--~~~~cP~~~~~l~~~~l~~n~ 123 (450)
-..|-|-||.+.-+|||++.|||-||=-||.+|+.. +...||+|+..++.+.++|=+
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 357999999999999999999999999999999984 355699999999998888854
No 48
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.63 E-value=4.2e-06 Score=93.81 Aligned_cols=224 Identities=17% Similarity=0.074 Sum_probs=133.2
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL 229 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i 229 (450)
.++.|+..|.+.++.+|..|+..|..+. ..+.++.|+.+|... +..++..|+.+|..+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~------ 683 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDG-AAAVRRAAAEGLRELVEVL------ 683 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcc------
Confidence 3567888888888889999999888653 123578888888765 7788888888887663211
Q ss_pred cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-----
Q 041252 230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC----- 304 (450)
Q Consensus 230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls----- 304 (450)
...+.|...|.+.++.+|..|+.+|..+...+ ...|+..|.++ ++.++..|+.+|..+.
T Consensus 684 ---~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~-d~~VR~~Av~aL~~~~~~~~l 747 (897)
T PRK13800 684 ---PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDP-DHRVRIEAVRALVSVDDVESV 747 (897)
T ss_pred ---CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCC-CHHHHHHHHHHHhcccCcHHH
Confidence 12346667777777777777777776653111 12234444443 4455555555554431
Q ss_pred ------cChHHHHHHHh---------cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh
Q 041252 305 ------LLNEVRSLVVS---------IGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM 369 (450)
Q Consensus 305 ------~~~~~~~~iv~---------~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~ 369 (450)
.+.+.|...++ .++++.|..++.+.++.++..|+.+|..+...+ ..++.++..|.
T Consensus 748 ~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~ 817 (897)
T PRK13800 748 AGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALR 817 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhc
Confidence 01111211111 123566777777777777777777777664321 12344566666
Q ss_pred cCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252 370 RVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLC 430 (450)
Q Consensus 370 ~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~l 430 (450)
..+..++..|+.+|..+... ..++.|+.++.+. +..+|+.|+..|..+
T Consensus 818 d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~-~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 818 ASAWQVRQGAARALAGAAAD------------VAVPALVEALTDP-HLDVRKAAVLALTRW 865 (897)
T ss_pred CCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCC-CHHHHHHHHHHHhcc
Confidence 66677777777777554321 2236666666555 566677766666553
No 49
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.63 E-value=1.1e-08 Score=96.49 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=60.3
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHH
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFS 134 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~ 134 (450)
.+.|-||.+.|+-|++++||||||--||..++.. ++.||.|..+++...+..|.-|...|+.+..
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred HHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 4679999999999999999999999999999996 7889999999999999999999999988854
No 50
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.63 E-value=4.5e-06 Score=93.55 Aligned_cols=227 Identities=16% Similarity=0.118 Sum_probs=146.5
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-----
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS----- 223 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~----- 223 (450)
..++.|+..|++.+..+|..|+..|..+....+ ..+.|...|.+. +..++..|+.+|..+...+
T Consensus 652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~~~~~~l~ 720 (897)
T PRK13800 652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------PAPALRDHLGSP-DPVVRAAALDVLRALRAGDAALFA 720 (897)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------chHHHHHHhcCC-CHHHHHHHHHHHHhhccCCHHHHH
Confidence 346778888888888999999999877742111 123444555442 4555555555554432110
Q ss_pred --------hhhh----hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCcc
Q 041252 224 --------ESKT----NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPN 291 (450)
Q Consensus 224 --------~~k~----~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~ 291 (450)
..|. .+..-+..+.|..++..++.++|..++.+|..+.... ...++.|..+++++ ++.
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~-d~~ 790 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDP-DPL 790 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCC-CHH
Confidence 0000 0111122344555666666666666666666663221 12257788888876 688
Q ss_pred chhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC
Q 041252 292 GILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV 371 (450)
Q Consensus 292 ~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~ 371 (450)
++..|+.+|.++..... +++.++..|.+.+..++..|+.+|..+.. ...++.|+.+|...
T Consensus 791 VR~aA~~aLg~~g~~~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~ 850 (897)
T PRK13800 791 VRAAALAALAELGCPPD---------DVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDP 850 (897)
T ss_pred HHHHHHHHHHhcCCcch---------hHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC
Confidence 88888888888754321 22467888988899999999999987642 35678999999999
Q ss_pred ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041252 372 SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLK 428 (450)
Q Consensus 372 s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~ 428 (450)
+..++..|+.+|..+. .++ . ..+.|...+... ++.+|+.|...|.
T Consensus 851 ~~~VR~~A~~aL~~~~-~~~-~---------a~~~L~~al~D~-d~~Vr~~A~~aL~ 895 (897)
T PRK13800 851 HLDVRKAAVLALTRWP-GDP-A---------ARDALTTALTDS-DADVRAYARRALA 895 (897)
T ss_pred CHHHHHHHHHHHhccC-CCH-H---------HHHHHHHHHhCC-CHHHHHHHHHHHh
Confidence 9999999999997761 111 1 245566677665 7889999988875
No 51
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=5.7e-06 Score=80.18 Aligned_cols=186 Identities=17% Similarity=0.157 Sum_probs=149.6
Q ss_pred ccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-CchhhhhccCCCchHHH
Q 041252 160 KVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DSESKTNLMQPAKVSLL 238 (450)
Q Consensus 160 ~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~~~k~~i~~~g~i~~L 238 (450)
+.+.+.+..|+..|..++. +-+|-.-+...||..+++..|.+. +..+++.|+++|...+. ++.....+++.|+++.|
T Consensus 94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 4556788999999999985 466888999999999999988875 78999999999999655 56788899999999999
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcC-CCccchhHHHHHHHHhc-cChHHHHHHHh
Q 041252 239 VDMLNEG-SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNK-RHPNGILPGLSLLRSIC-LLNEVRSLVVS 315 (450)
Q Consensus 239 v~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~-~~~~~~~~al~aL~~Ls-~~~~~~~~iv~ 315 (450)
+..|.+. +.+++..|..++..|...+..-...+-..++...|..++.++ .+...+..++..+..|. .+...+..+-.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999865 678889999999999887766555566667799999999885 34566778888888887 44445554555
Q ss_pred cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC
Q 041252 316 IGAVPQLVELLPSLDPDCLQLALCILDALSSL 347 (450)
Q Consensus 316 ~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 347 (450)
.|....+..+.++.+.++.+.++.++..+...
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 77777888888888888888888877766544
No 52
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3.7e-06 Score=88.55 Aligned_cols=258 Identities=16% Similarity=0.163 Sum_probs=191.2
Q ss_pred hcHHHHHHHhhcc-chHHHHHHHHHHHHHHH-HcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-Cchh
Q 041252 149 GRASELLGTLKKV-KGQARVQALKELHQIAA-AHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DSES 225 (450)
Q Consensus 149 ~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~-~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~~~ 225 (450)
.++..|+.-|... ++..|.+|+.+|..+.. .+++.-..+--.-.||.|+.+|+...+.++.-.|+.+|.+|+. -+..
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 4677888888764 67788899998876554 4443322333334589999999987788999999999999775 5677
Q ss_pred hhhccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252 226 KTNLMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC 304 (450)
Q Consensus 226 k~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls 304 (450)
...+++.++||.++.-|.. +..++.+.+..+|..++..+.. .+-..|++-..+..|.= .+..+++.|+.+-.|.|
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDF-FSi~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDF-FSIHAQRVALAIAANCC 322 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 7888999999999997764 5789999999999999876542 34456666666666643 24568999999999999
Q ss_pred c--ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC----hhhHHHHhccCCChHHHHHHHhcC----ChH
Q 041252 305 L--LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL----PEGKLALKDCANTIPNTVRLLMRV----SED 374 (450)
Q Consensus 305 ~--~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~----~e~r~~i~~~~g~i~~Lv~lL~~~----s~~ 374 (450)
. ..+.=..+++ ++|.|-.+|+..+....|.++-.+..++.. ++--+++.. .|.|...+++|.-. +..
T Consensus 323 ksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dLi~~~~qLlsvt~t~Ls~~ 399 (1051)
T KOG0168|consen 323 KSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCS-HDLITNIQQLLSVTPTILSNG 399 (1051)
T ss_pred hcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhc-hhHHHHHHHHHhcCccccccc
Confidence 3 3333334444 689999999888989999998888888754 455566777 68899999988754 334
Q ss_pred HHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcC
Q 041252 375 CTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSG 414 (450)
Q Consensus 375 ~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~ 414 (450)
.....++.|..+|..++- ..+...+.++...|..+++..
T Consensus 400 ~~~~vIrmls~msS~~pl-~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 400 TYTGVIRMLSLMSSGSPL-LFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred chhHHHHHHHHHccCChH-HHHHHHHhhHHHHHHHHHhcc
Confidence 555567777777887763 345667788888888888643
No 53
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.58 E-value=3.6e-08 Score=69.24 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=40.7
Q ss_pred eeeCcCCCCCCCCCeeCCCCCc-ccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 69 VFVCPISLEPMQDPVTLCTGQT-YERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
++.|+||++-+.++++.+|||. ||..|+.+|+.. ...||.|++++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 5789999999999999999999 999999999994 788999998764
No 54
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.57 E-value=2.2e-08 Score=68.36 Aligned_cols=40 Identities=35% Similarity=0.727 Sum_probs=34.0
Q ss_pred eCcCCCCCCC---CCeeCCCCCcccHHHHHHHHhcCCCCCCCcC
Q 041252 71 VCPISLEPMQ---DPVTLCTGQTYERSNILKWFSLGRYTCPTTM 111 (450)
Q Consensus 71 ~Cpi~~~~m~---dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~ 111 (450)
.||||++.|. .++.++|||.|.++||.+|++. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999994 4667899999999999999997 57999985
No 55
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.53 E-value=8.8e-08 Score=65.17 Aligned_cols=43 Identities=42% Similarity=0.814 Sum_probs=38.5
Q ss_pred eCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcCCCCCCCcCCc
Q 041252 71 VCPISLEPMQDPVTLC-TGQTYERSNILKWFSLGRYTCPTTMQE 113 (450)
Q Consensus 71 ~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~ 113 (450)
.||||.+.+.+|+.+. |||.|++.|+.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999999998776 999999999999999767889999864
No 56
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.3e-08 Score=84.84 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=43.9
Q ss_pred eeeCcCCCCCCCC--CeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCc
Q 041252 69 VFVCPISLEPMQD--PVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT 120 (450)
Q Consensus 69 ~~~Cpi~~~~m~d--Pv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~ 120 (450)
-|.||||++-++. ||.+.|||.||+.||+..++. ...||.|++.++.+.+.
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFH 183 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhe
Confidence 4999999998886 666889999999999999997 56799999988776554
No 57
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.48 E-value=2e-06 Score=71.82 Aligned_cols=154 Identities=11% Similarity=-0.002 Sum_probs=123.4
Q ss_pred hhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHH
Q 041252 273 SHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKL 352 (450)
Q Consensus 273 ~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~ 352 (450)
..+.+..||.-.....+.++++....-|.|.+-++-|-..+.+..+++.++.-|...+..+++-+++.|+|+|-.+.+.+
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 45667778876666557788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041252 353 ALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKL 429 (450)
Q Consensus 353 ~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ 429 (450)
-|++ ++|+|..+..+.++.+.+...|+.+|..++-..+.. +.+.....++..+...-.+. +...+.-|...|+.
T Consensus 94 ~I~e-a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~-r~ell~p~Vv~~v~r~~~s~-s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 94 FIRE-ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTE-RDELLSPAVVRTVQRWRESK-SHDERNLASAFLDK 167 (173)
T ss_pred HHHH-hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccch-hHHhccHHHHHHHHHHHHHh-hHHHHHHHHHHHHh
Confidence 9998 999999999999999999999999999998766533 44444544555444444343 33445555555443
No 58
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=4.4e-06 Score=88.05 Aligned_cols=212 Identities=15% Similarity=0.122 Sum_probs=154.8
Q ss_pred HHHhhhCCCCChhhHHHHHHHHHh-cCC-CchhhhhccCCCchHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCChhhHh
Q 041252 195 LISSLLGPFTSHAVGSEAVGVLVN-LTL-DSESKTNLMQPAKVSLLVDMLNEG-SVETKINCTRLIEKLMEEKDFRPEIV 271 (450)
Q Consensus 195 ~Lv~lL~~~~~~~v~~~Al~~L~~-Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~~ 271 (450)
.|+.=|+...++..+-+|+.-|+. |+. +++.-..+.-.-.+|.||.+|+++ +.++..+|+++|.+|++.-+.-..++
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence 344444443356666677777776 444 344444555567899999999976 89999999999999987655555567
Q ss_pred hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC--hh
Q 041252 272 SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL--PE 349 (450)
Q Consensus 272 ~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e 349 (450)
...++||.|+.=|..=...++-+.++.||..|+..+. ..+.++|++...+..|.=-+..++..|+++-.|+|.. ++
T Consensus 251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd 328 (1051)
T KOG0168|consen 251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD 328 (1051)
T ss_pred ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 7888899888755432357788999999999995432 3578899999998888655678999999999999976 55
Q ss_pred hHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCch--hHHHHHHhcChHHHHHHHH
Q 041252 350 GKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPE--ECSSAAVDAGLAAKLFLVI 411 (450)
Q Consensus 350 ~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~--~~~~~~~~~G~i~~L~~ll 411 (450)
.-.-+.+ ++|.|-.+|.....+..|+++-++..++..... +..+.....|.+....+|+
T Consensus 329 ~f~~v~e---alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLl 389 (1051)
T KOG0168|consen 329 EFHFVME---ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLL 389 (1051)
T ss_pred cchHHHH---HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHH
Confidence 5566655 699999999999999999999998887643311 2234444556555555544
No 59
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.3e-07 Score=88.19 Aligned_cols=55 Identities=27% Similarity=0.507 Sum_probs=48.1
Q ss_pred CCC-CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCc
Q 041252 65 EIP-SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT 120 (450)
Q Consensus 65 ~~p-~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~ 120 (450)
.+| ..+.|.+|.+-++||--++|||-||=+||.+|..+ ...||.||+.+++..++
T Consensus 234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI 289 (293)
T ss_pred cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence 444 46999999999999999999999999999999997 56699999998876654
No 60
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.43 E-value=1.2e-07 Score=87.71 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=57.4
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHh
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQ 135 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~ 135 (450)
-..|-||.+.++-|+.++||||||.-||..++.. ++.||.|+.+.+..-+..+..++..++.+..-
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~ 90 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHARN 90 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhhc
Confidence 4679999999999999999999999999999986 78999999988877777777777777776543
No 61
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.5e-07 Score=92.24 Aligned_cols=69 Identities=25% Similarity=0.485 Sum_probs=57.9
Q ss_pred CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhc
Q 041252 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQK 136 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~ 136 (450)
...+.+.||||.+.|++|++++|||+||+.||..++. ....||.|+. .. ..+.+|..+..+++.....+
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~-~~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PS-RNLRPNVLLANLVERLRQLR 77 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-ch-hccCccHHHHHHHHHHHhcC
Confidence 3446788999999999999999999999999999998 5678999995 22 27779999998888876653
No 62
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.41 E-value=2.7e-07 Score=60.50 Aligned_cols=39 Identities=51% Similarity=0.968 Sum_probs=35.9
Q ss_pred CcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCc
Q 041252 72 CPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTT 110 (450)
Q Consensus 72 Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~ 110 (450)
||||.+..++|++++|||.|+..|+.+|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999999656779986
No 63
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3.8e-07 Score=98.30 Aligned_cols=74 Identities=32% Similarity=0.489 Sum_probs=69.3
Q ss_pred ccCCCCeeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252 63 LAEIPSVFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY 137 (450)
Q Consensus 63 ~~~~p~~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~ 137 (450)
.+++|++|.-||+.-+|+|||++| +|+|-||+.|+.++.. ..+.|.||.+|+.+.++||.+|+.-|+.|..++.
T Consensus 864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence 468999999999999999999998 9999999999999986 6889999999999999999999999999988753
No 64
>PHA02926 zinc finger-like protein; Provisional
Probab=98.32 E-value=4.4e-07 Score=81.57 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=49.5
Q ss_pred chHHHHHhhhc-cCCCCeeeCcCCCCCCCC---------CeeCCCCCcccHHHHHHHHhcC-----CCCCCCcCCcCCCC
Q 041252 53 DLKKMIAELDL-AEIPSVFVCPISLEPMQD---------PVTLCTGQTYERSNILKWFSLG-----RYTCPTTMQELWDD 117 (450)
Q Consensus 53 ~~~~~~~~~~~-~~~p~~~~Cpi~~~~m~d---------Pv~~~~g~ty~r~~I~~~~~~~-----~~~cP~~~~~l~~~ 117 (450)
+..+++.+-+. .....+..|+||.+...+ +++.+|+|+||.+||.+|.+.. ...||.||..+.
T Consensus 153 ~i~~il~~ye~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~-- 230 (242)
T PHA02926 153 DIIKILDKYEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR-- 230 (242)
T ss_pred chhHHHHHHHHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--
Confidence 34444554443 466678999999998643 4667899999999999998742 345999998764
Q ss_pred CCcchH
Q 041252 118 SVTPNK 123 (450)
Q Consensus 118 ~l~~n~ 123 (450)
.++|++
T Consensus 231 ~I~pSr 236 (242)
T PHA02926 231 NITMSK 236 (242)
T ss_pred eecccc
Confidence 344443
No 65
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.32 E-value=3.1e-05 Score=81.76 Aligned_cols=254 Identities=18% Similarity=0.244 Sum_probs=169.2
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhc-CCCchhhhhc
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNL-TLDSESKTNL 229 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~L-s~~~~~k~~i 229 (450)
++.+...+.+.++.+|.+|+.++..+...+++ .+... .++.+..+|.+. +..+...|+.++..+ ..++... -
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~-~~~V~~~a~~~l~~i~~~~~~~~--~ 188 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDK-DPSVVSAALSLLSEIKCNDDSYK--S 188 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHS-SHHHHHHHHHHHHHHHCTHHHHT--T
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCC-cchhHHHHHHHHHHHccCcchhh--h
Confidence 45667777888889999999999999887654 23333 578899999665 788999999999988 2221111 1
Q ss_pred cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHH
Q 041252 230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEV 309 (450)
Q Consensus 230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~ 309 (450)
.-...+..|..++...++-.+.....+|..++..+.... .....++.+..++.+. ++.+.-.+..++..+.....
T Consensus 189 ~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~---~~~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~- 263 (526)
T PF01602_consen 189 LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDA---DKNRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE- 263 (526)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH-
T ss_pred hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhh---hHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH-
Confidence 113344555555567788888888888887764432211 1145778888888765 57778888888888887665
Q ss_pred HHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh-cCChHHHHHHHHHHHHhcc
Q 041252 310 RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM-RVSEDCTQYALSILWSICK 388 (450)
Q Consensus 310 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~ 388 (450)
.-..+++.|+.+|.+.++.++-.++..|..++... ...+.. ....+..+. ..+..++..++.+|..++.
T Consensus 264 ----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~~----~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 264 ----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVFN----QSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp ----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHGT----HHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred ----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhhh----hhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 33346678999999888889999999999998754 222221 223344444 6677888999999988876
Q ss_pred cCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Q 041252 389 IAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNY 434 (450)
Q Consensus 389 ~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~ 434 (450)
.. + ... ++..|...+...+++..++.+...+..+...+
T Consensus 334 ~~--n-~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 334 ES--N-VKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HH--H-HHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred cc--c-hhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 43 2 222 46666666644435667777776666655543
No 66
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.31 E-value=5e-05 Score=80.23 Aligned_cols=281 Identities=19% Similarity=0.161 Sum_probs=189.9
Q ss_pred cchHHHHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhh
Q 041252 120 TPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSL 199 (450)
Q Consensus 120 ~~n~~L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~l 199 (450)
..|+.++++..-+.+.-....+ +..-=.+..+.+-|.+.++..|..|++.|.++. +++.... .++.+..+
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~---~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~l 122 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDP---ELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKL 122 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSH---HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHH
Confidence 6778888887776665321110 000112445666677788889999999999987 3434333 36788888
Q ss_pred hCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHH
Q 041252 200 LGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIG 279 (450)
Q Consensus 200 L~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~ 279 (450)
|.+. +.-++..|+.++..+..... ..+... .++.+..+|.+.++.++..|..++..+ ..++. ...-.-...+..
T Consensus 123 l~~~-~~~VRk~A~~~l~~i~~~~p--~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~-~~~~~~~~~~~~ 196 (526)
T PF01602_consen 123 LSDP-SPYVRKKAALALLKIYRKDP--DLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDD-SYKSLIPKLIRI 196 (526)
T ss_dssp HHSS-SHHHHHHHHHHHHHHHHHCH--CCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHH-HHTTHHHHHHHH
T ss_pred hcCC-chHHHHHHHHHHHHHhccCH--HHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcc-hhhhhHHHHHHH
Confidence 8875 67899999999888654321 122122 589999999988999999999999999 22211 100111234455
Q ss_pred HHHHHhcCCCccchhHHHHHHHHhccChH-HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccC
Q 041252 280 LMRLVKNKRHPNGILPGLSLLRSICLLNE-VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCA 358 (450)
Q Consensus 280 Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~-~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~ 358 (450)
|.+++... ++-.+...++.|..++.... .... ...++.+..++++.++.+.-.|+.++..+...+. +..
T Consensus 197 L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----~~~-- 266 (526)
T PF01602_consen 197 LCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----LLQ-- 266 (526)
T ss_dssp HHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH----HHH--
T ss_pred hhhccccc-chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH----HHH--
Confidence 55555444 57678899999999985433 3311 4566788888888889999999999999988766 332
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 359 NTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 359 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
.+++.|++++.+.++.++-.++..|..++...+ ..+. .. ...+..+....+..+|..+..+|..+...
T Consensus 267 ~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~-----~~v~-~~-~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 267 KAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP-----PAVF-NQ-SLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH-----HHHG-TH-HHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred hhHHHHHHHhhcccchhehhHHHHHHHhhcccc-----hhhh-hh-hhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 567899999998888899999999999988763 1233 22 23334555344788999999888776654
No 67
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.30 E-value=7.5e-05 Score=77.23 Aligned_cols=118 Identities=18% Similarity=0.099 Sum_probs=94.7
Q ss_pred cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhH
Q 041252 316 IGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEEC 394 (450)
Q Consensus 316 ~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~ 394 (450)
..+..+||.++.+++..+...++++|.|+.-. ..-|..+.+ .|||..+.+.+.......+..++++|.++..++.+..
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~-~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~ 496 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLR-NNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE 496 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHH-cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH
Confidence 34777999999888999999999999999855 778888988 7999999999999999999999999999999886543
Q ss_pred HHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252 395 SSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT 435 (450)
Q Consensus 395 ~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~ 435 (450)
+ ...-..+...++..+-++....+++.+..+||++.-+.+
T Consensus 497 k-~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 497 K-FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred H-HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 3 333333333444444444478999999999999887744
No 68
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.29 E-value=1e-06 Score=84.26 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=45.3
Q ss_pred CeeeCcCCCC-CCCCCe----eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCC----CcchHHHHH
Q 041252 68 SVFVCPISLE-PMQDPV----TLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDS----VTPNKTLYH 127 (450)
Q Consensus 68 ~~~~Cpi~~~-~m~dPv----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~----l~~n~~L~~ 127 (450)
++..||+|+. ..-.|- +.+|||+||++||...|..+...||.|+.++.... +.++..+.+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vek 70 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEK 70 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHH
Confidence 3568999996 344553 33699999999999988877788999999887655 455554433
No 69
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.6e-06 Score=88.39 Aligned_cols=74 Identities=31% Similarity=0.398 Sum_probs=68.0
Q ss_pred ccCCCCeeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252 63 LAEIPSVFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY 137 (450)
Q Consensus 63 ~~~~p~~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~ 137 (450)
-+++|++|+.|++..+|+|||+++ +|-|.+|+.|..++-. ..+.|..|.|++.++++||..||+.|-.|..+++
T Consensus 848 ~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 848 MGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKG 922 (929)
T ss_pred ccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence 478999999999999999999987 8999999999999886 6789999999999999999999999999976644
No 70
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=2.2e-07 Score=88.63 Aligned_cols=70 Identities=21% Similarity=0.320 Sum_probs=59.8
Q ss_pred CCCCeeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcCCCCCCCcCCcCC-CCCCcchHHHHHHHHHHHH
Q 041252 65 EIPSVFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSLGRYTCPTTMQELW-DDSVTPNKTLYHLIHTWFS 134 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~-~~~l~~n~~L~~~I~~w~~ 134 (450)
.+-.+|.||||+++++...++. |+|.||++||-..+..++..||.|++.+. ...|.++..+..+|.+...
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~ 110 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYP 110 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhc
Confidence 4556799999999999998875 99999999999999999999999999874 4688888878888766543
No 71
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00034 Score=76.71 Aligned_cols=280 Identities=14% Similarity=0.131 Sum_probs=163.5
Q ss_pred hcHHHHHHHh----hccchHHHHHHHHHHHHHHHHcHHHHHHHHhhC-ChHHHHhhhCCC---CChhhHHHHHHHHHhcC
Q 041252 149 GRASELLGTL----KKVKGQARVQALKELHQIAAAHASARKTMVDEG-GVALISSLLGPF---TSHAVGSEAVGVLVNLT 220 (450)
Q Consensus 149 ~~i~~Lv~~L----~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G-~i~~Lv~lL~~~---~~~~v~~~Al~~L~~Ls 220 (450)
+.++.++.++ ..++..+|..|++++-.++...+.++..+...+ .+|.++..+... ++.+....++.+|-.|.
T Consensus 155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~ 234 (1075)
T KOG2171|consen 155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL 234 (1075)
T ss_pred hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence 4455555555 344555999999999988876654555555543 367666666432 24445566666666654
Q ss_pred CCch-h-hhhccCCCchHHHHHHhcCC--CHHHHHHHHHHHHHHhccCC-------------------------------
Q 041252 221 LDSE-S-KTNLMQPAKVSLLVDMLNEG--SVETKINCTRLIEKLMEEKD------------------------------- 265 (450)
Q Consensus 221 ~~~~-~-k~~i~~~g~i~~Lv~lL~~~--~~~~~~~aa~~L~~La~~~~------------------------------- 265 (450)
..+. . +..+ ...|.....+.++. +..+|..|..+|..+++...
T Consensus 235 e~~pk~l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 235 ESEPKLLRPHL--SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred hhchHHHHHHH--HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 3321 1 1111 11222222222222 34444444444444332200
Q ss_pred -----------ChhhHhhh--------h-------hHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHHHHHHhcCC
Q 041252 266 -----------FRPEIVSS--------H-------RLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVRSLVVSIGA 318 (450)
Q Consensus 266 -----------~~~~~~~~--------~-------g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~ 318 (450)
....+..+ . -.++.+-.+|.+. ++.-+++++.||..++ +..+.-.... ..+
T Consensus 313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l-~~I 390 (1075)
T KOG2171|consen 313 NEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNL-PKI 390 (1075)
T ss_pred cccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHH-HHH
Confidence 00000000 0 1222233334443 4555667777777776 3332211111 246
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCC--hhhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccCchhHH
Q 041252 319 VPQLVELLPSLDPDCLQLALCILDALSSL--PEGKLALKDCANTIPNTVRLLMRV-SEDCTQYALSILWSICKIAPEECS 395 (450)
Q Consensus 319 v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~~~~ 395 (450)
++.++..|.+.++.++..|+.++..++.. |+-.+...+ -.+|.|+..+.+. +++++.+|+.+|.++...++....
T Consensus 391 l~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e--~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l 468 (1075)
T KOG2171|consen 391 LPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE--RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL 468 (1075)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH--hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 77788888999999999999999999987 666666654 6788899998775 679999999999999887764322
Q ss_pred HHHHhcChHHHHHH-HHHcCCCHHHHHHHHHHHHHHHhhcCC
Q 041252 396 SAAVDAGLAAKLFL-VIQSGCNPVLKQRSAELLKLCSLNYTD 436 (450)
Q Consensus 396 ~~~~~~G~i~~L~~-ll~s~~~~~~k~~A~~lL~~ls~~~~~ 436 (450)
.-- =.+.+.+++. +++++ .+.+++.+...+.-.+...++
T Consensus 469 ~pY-Ld~lm~~~l~~L~~~~-~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 469 EPY-LDGLMEKKLLLLLQSS-KPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HHH-HHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHhh
Confidence 111 1466664444 44665 899999999999887766443
No 72
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.14 E-value=4.4e-06 Score=55.89 Aligned_cols=41 Identities=34% Similarity=0.502 Sum_probs=38.5
Q ss_pred ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252 306 LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS 346 (450)
Q Consensus 306 ~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~ 346 (450)
+++++..+++.|+||.|+.+|.+.+.++++.|+++|.||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999999974
No 73
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.14 E-value=3.1e-05 Score=64.77 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=106.8
Q ss_pred CchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHH
Q 041252 233 AKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRS 311 (450)
Q Consensus 233 g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~ 311 (450)
+.++.||.-... .+.+.++....=|.|.+- ++.+-....+..++...+..|... +...++-+.+.|+|+|.++.|.+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHHH
Confidence 456677766654 489999998887888864 456777788889999999999876 57788999999999999999999
Q ss_pred HHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcC
Q 041252 312 LVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRV 371 (450)
Q Consensus 312 ~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~ 371 (450)
.|++++++|..+..+++....+...|+.+|..|+-. ..-|..+.. |.+|+.+.+.
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~-----p~Vv~~v~r~ 149 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS-----PAVVRTVQRW 149 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc-----HHHHHHHHHH
Confidence 999999999999999999999999999999999854 334555544 5666666543
No 74
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.12 E-value=2.4e-06 Score=58.14 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=35.0
Q ss_pred eCcCCCCCC---CCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCC
Q 041252 71 VCPISLEPM---QDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQ 112 (450)
Q Consensus 71 ~Cpi~~~~m---~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~ 112 (450)
.||+|.+.+ +.|++++|||+||..||.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 399999999 357889999999999999998 44678999974
No 75
>PF05536 Neurochondrin: Neurochondrin
Probab=98.07 E-value=0.00036 Score=73.67 Aligned_cols=246 Identities=16% Similarity=0.148 Sum_probs=158.1
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcH---HHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHA---SARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES 225 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~---~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~ 225 (450)
..+++.+.+|+..+.+.|..++--+.++++.++ ..++.|.++=|.+-|-++|++....
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~------------------- 65 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVP------------------- 65 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCC-------------------
Confidence 456778888988877788888888888887654 3345677776677888888764210
Q ss_pred hhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252 226 KTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL 305 (450)
Q Consensus 226 k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~ 305 (450)
.|+ +....+..|..+|..++..++.... -.-.+-||.|++++....+..+...++.+|..++.
T Consensus 66 ------~~~----------~~~~~~~LavsvL~~f~~~~~~a~~-~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias 128 (543)
T PF05536_consen 66 ------SDC----------PPEEYLSLAVSVLAAFCRDPELASS-PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS 128 (543)
T ss_pred ------CCC----------CHHHHHHHHHHHHHHHcCChhhhcC-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc
Confidence 000 3345556677777777654332110 11235689999999876434789999999999999
Q ss_pred ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh----cCChHHHHHHHH
Q 041252 306 LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM----RVSEDCTQYALS 381 (450)
Q Consensus 306 ~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~----~~s~~~~e~A~~ 381 (450)
+++.+..+++.|+|+.|.+.+.+ .+...+.|+.+|.+++.... .....++.-.+..++.-+. ......+-..+.
T Consensus 129 ~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~ 206 (543)
T PF05536_consen 129 SPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLE 206 (543)
T ss_pred CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHH
Confidence 99999999999999999999987 66789999999999886533 2122222233333433333 223344445666
Q ss_pred HHHHhcccCch---h-HHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252 382 ILWSICKIAPE---E-CSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL 432 (450)
Q Consensus 382 ~L~~L~~~~~~---~-~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~ 432 (450)
.|..+-...+. . ....-.-..+..-|..++++.-.+..|..|..+...+-.
T Consensus 207 ~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 207 FLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 77766554421 0 011111233445567888887677777666655544433
No 76
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.06 E-value=0.00041 Score=69.70 Aligned_cols=250 Identities=17% Similarity=0.129 Sum_probs=176.0
Q ss_pred HHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCC--CHH
Q 041252 171 KELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEG--SVE 248 (450)
Q Consensus 171 ~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~ 248 (450)
..|..+-+.+++.|..+.-.-..+.+..++-+. +.+++..+..+++.+..+.+.-..+.+.+.--.++.-|..+ +..
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~-~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSD-SKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 344455555665555544333344444444343 47899999999999999988888888888777788878654 677
Q ss_pred HHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCC
Q 041252 249 TKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPS 328 (450)
Q Consensus 249 ~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~ 328 (450)
.|++|..+++.+...+....++ ..|++..++.+..+. +...+..++.+|..|+..+. ..++++|++..|++.+-+
T Consensus 84 ER~QALkliR~~l~~~~~~~~~--~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKKGPKEI--PRGVVRALVAIAEHE-DDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHHHhcCCcccC--CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHh
Confidence 8999999999997664433332 568889999998886 56788999999999995432 346689999999999987
Q ss_pred CChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC-------Ch--HHHHHHHHHHHHhcccCchhHHHHHH
Q 041252 329 LDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV-------SE--DCTQYALSILWSICKIAPEECSSAAV 399 (450)
Q Consensus 329 ~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~-------s~--~~~e~A~~~L~~L~~~~~~~~~~~~~ 399 (450)
+..++.+..+.++-.+-.+|..|.-+.. .--+..++.-.... .. +--+.+..++..+-+..++-. ....
T Consensus 159 ~~~~~~~~l~~~lL~lLd~p~tR~yl~~-~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl-~l~~ 236 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLDSPRTRKYLRP-GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL-YLSM 236 (371)
T ss_pred ccHhHHHHHHHHHHHHhCCcchhhhhcC-CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee-eeec
Confidence 7767999999999999999999998765 33455555554433 11 233455566666655554321 1112
Q ss_pred h-cChHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041252 400 D-AGLAAKLFLVIQSGCNPVLKQRSAELLKL 429 (450)
Q Consensus 400 ~-~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ 429 (450)
. ..++..|+..++.+ ++.+|+....++.-
T Consensus 237 ~~~~~lksLv~~L~~p-~~~ir~~Ildll~d 266 (371)
T PF14664_consen 237 NDFRGLKSLVDSLRLP-NPEIRKAILDLLFD 266 (371)
T ss_pred CCchHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 2 25778899999888 67788887765554
No 77
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00022 Score=76.98 Aligned_cols=244 Identities=15% Similarity=0.161 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHHcHHHHHHHHh----hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHH
Q 041252 166 RVQALKELHQIAAAHASARKTMVD----EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDM 241 (450)
Q Consensus 166 ~~~Al~~L~~l~~~~~~~r~~i~~----~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l 241 (450)
..-++.+|+++.+.+++....+.. .|-.+.+...|...++..++..|+.++.-+..+.++-..+++.+.+..|+.+
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHH
Confidence 345899999999888855444332 3667788888877667789999999999888888999999999999999998
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-----------------
Q 041252 242 LNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC----------------- 304 (450)
Q Consensus 242 L~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls----------------- 304 (450)
|. .-+..|+.+..+|+.|++..+..++.+ ++|++..+..++-..+++..+.+++..|..|.
T Consensus 1822 LH-S~PS~R~~vL~vLYAL~S~~~i~keA~-~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFL 1899 (2235)
T KOG1789|consen 1822 LH-SQPSMRARVLDVLYALSSNGQIGKEAL-EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFL 1899 (2235)
T ss_pred Hh-cChHHHHHHHHHHHHHhcCcHHHHHHH-hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhc
Confidence 85 457888999999999987765555443 34444444443332222222222222222111
Q ss_pred --------------------------------------------------------------------------------
Q 041252 305 -------------------------------------------------------------------------------- 304 (450)
Q Consensus 305 -------------------------------------------------------------------------------- 304 (450)
T Consensus 1900 P~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVG 1979 (2235)
T KOG1789|consen 1900 PEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVG 1979 (2235)
T ss_pred hHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccc
Confidence
Q ss_pred -------------------------------------------------------cChHHHHHHHhcCCHHHHHHhcCCC
Q 041252 305 -------------------------------------------------------LLNEVRSLVVSIGAVPQLVELLPSL 329 (450)
Q Consensus 305 -------------------------------------------------------~~~~~~~~iv~~G~v~~Lv~lL~~~ 329 (450)
.++.-...+-..|.+|.++..+.-.
T Consensus 1980 G~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~ 2059 (2235)
T KOG1789|consen 1980 GSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQ 2059 (2235)
T ss_pred hhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhc
Confidence 1122222222334555555544333
Q ss_pred ChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHH
Q 041252 330 DPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFL 409 (450)
Q Consensus 330 ~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ 409 (450)
+..+-..|+.+|..|+.+.-...++.. -.++..++..|+... ...-.|+.+|-.+.....++....+...|.++.|+.
T Consensus 2060 n~s~P~SaiRVlH~Lsen~~C~~AMA~-l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~ 2137 (2235)
T KOG1789|consen 2060 NTSAPRSAIRVLHELSENQFCCDAMAQ-LPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQ 2137 (2235)
T ss_pred CCcCcHHHHHHHHHHhhccHHHHHHhc-cccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHH
Confidence 334457889999999998888888876 567777888876543 233378888888888777676777889999999999
Q ss_pred HHHc
Q 041252 410 VIQS 413 (450)
Q Consensus 410 ll~s 413 (450)
+|..
T Consensus 2138 LLd~ 2141 (2235)
T KOG1789|consen 2138 LLDS 2141 (2235)
T ss_pred Hhcc
Confidence 9954
No 78
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4e-06 Score=84.19 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=62.1
Q ss_pred cchHHHHHhhhccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcC----CCCCCCcCCcCCCCCCcchH----
Q 041252 52 LDLKKMIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLG----RYTCPTTMQELWDDSVTPNK---- 123 (450)
Q Consensus 52 ~~~~~~~~~~~~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~----~~~cP~~~~~l~~~~l~~n~---- 123 (450)
||-...|+.....-.+.+..||||.+.-.-|+.+.|||.||-.||-++|..+ ...||.|+..+...++.|-+
T Consensus 169 pD~p~~~e~i~qv~~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~ 248 (513)
T KOG2164|consen 169 PDAPVDWEDIFQVYGSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD 248 (513)
T ss_pred CccccchHHhhhhhcCcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence 3333335555445555689999999999999999999999999999988753 45699999887765554432
Q ss_pred HHHHHHHHHHHhccc
Q 041252 124 TLYHLIHTWFSQKYL 138 (450)
Q Consensus 124 ~L~~~I~~w~~~~~~ 138 (450)
.-..-++..+..|+.
T Consensus 249 qkke~l~~~~~~ng~ 263 (513)
T KOG2164|consen 249 QKKEELKLHQDPNGI 263 (513)
T ss_pred cccHHHHHHhcccCC
Confidence 223336666666663
No 79
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=3.1e-06 Score=78.11 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=45.1
Q ss_pred CeeeCcCCCCCCCCCeeCCCCCcccHHHHHH-HHhcCCCCCCCcCCcCCCCC
Q 041252 68 SVFVCPISLEPMQDPVTLCTGQTYERSNILK-WFSLGRYTCPTTMQELWDDS 118 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~-~~~~~~~~cP~~~~~l~~~~ 118 (450)
.+|.|+||.+.+.+|+-++|||.||-+||-. |-.+...+||.||+...+..
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 5899999999999999999999999999999 87776677999998765443
No 80
>PTZ00429 beta-adaptin; Provisional
Probab=97.96 E-value=0.0027 Score=69.21 Aligned_cols=264 Identities=11% Similarity=0.056 Sum_probs=171.1
Q ss_pred chhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchh
Q 041252 146 DVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES 225 (450)
Q Consensus 146 ~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~ 225 (450)
|.......++..+.+.+.+.|.-..-.|.+.+..+++.-- + ++..+.+-+.+. ++.++..|+.+|.++...+ .
T Consensus 65 DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-L----aINtl~KDl~d~-Np~IRaLALRtLs~Ir~~~-i 137 (746)
T PTZ00429 65 DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-L----AVNTFLQDTTNS-SPVVRALAVRTMMCIRVSS-V 137 (746)
T ss_pred CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-H----HHHHHHHHcCCC-CHHHHHHHHHHHHcCCcHH-H
Confidence 3444566777777777666776666666666655443211 1 255666666654 6788999999888755422 1
Q ss_pred hhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252 226 KTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL 305 (450)
Q Consensus 226 k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~ 305 (450)
- .-.+..+.+.|.+.++-+|..|+-++..+-..+. +.+...++++.|.++|.+. ++.++.+|+.+|..+..
T Consensus 138 ~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 138 L-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDN-NPVVASNAAAIVCEVND 208 (746)
T ss_pred H-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCC-CccHHHHHHHHHHHHHH
Confidence 1 2235667777888899999999999999965443 2345667889999998876 79999999999999985
Q ss_pred ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHH
Q 041252 306 LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWS 385 (450)
Q Consensus 306 ~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~ 385 (450)
....... ...+.+..|+..|.+.++=.+-..+.+|.... |....... ..+..+...|.+.++.+.-.|+.++..
T Consensus 209 ~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e~~---~il~~l~~~Lq~~N~AVVl~Aik~il~ 282 (746)
T PTZ00429 209 YGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKESAE---TLLTRVLPRMSHQNPAVVMGAIKVVAN 282 (746)
T ss_pred hCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHHHH---HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4322221 23455667788887666666665555554322 32222221 356677788888889999999999999
Q ss_pred hcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Q 041252 386 ICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNY 434 (450)
Q Consensus 386 L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~ 434 (450)
+......+....+.. -+..+|+.++ ++ ++.+|--+..-+..+...+
T Consensus 283 l~~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~ 328 (746)
T PTZ00429 283 LASRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIF 328 (746)
T ss_pred hcCcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHC
Confidence 876542222222221 2335566664 33 5778888887666665543
No 81
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.96 E-value=4.1e-06 Score=79.75 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=55.5
Q ss_pred CCCCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCC----CCCcchHHHHHHHHHH
Q 041252 65 EIPSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWD----DSVTPNKTLYHLIHTW 132 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~----~~l~~n~~L~~~I~~w 132 (450)
++-.+.+|++|+..|.|+-++ .|=|||||+||-+++.. ..+||.|+..+-. ..+.++++|..++...
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 455678999999999999976 49999999999999998 7899999876543 3567778888877655
No 82
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.95 E-value=0.00046 Score=68.82 Aligned_cols=265 Identities=18% Similarity=0.171 Sum_probs=166.2
Q ss_pred hcHHHHHHHhhccchH--HHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hh
Q 041252 149 GRASELLGTLKKVKGQ--ARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ES 225 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~--~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~ 225 (450)
+.++.|+.++.+++.+ +|.+|.+.|..+.. .+|++.++..| ...++.+-+.....+.+...+++|-++-.+. +.
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet 256 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEET 256 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHH
Confidence 4467788888887654 68999999988764 46889888877 5555555444335678888899999977754 67
Q ss_pred hhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--ChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHh
Q 041252 226 KTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD--FRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSI 303 (450)
Q Consensus 226 k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~--~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~L 303 (450)
...+++.|++..++-..+..++....+|+.+|.|.+-..- ..+. +.+..+-+-|+-+-.++ +.-.+-.|.-+...|
T Consensus 257 ~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrr-mveKr~~EWLF~LA~sk-Del~R~~AClAV~vl 334 (832)
T KOG3678|consen 257 CQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRR-MVEKRAAEWLFPLAFSK-DELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHH-HHHhhhhhhhhhhhcch-HHHHHHHHHHHHhhh
Confidence 7889999999999988888899999999999999974432 2222 33333334444444443 444566777788888
Q ss_pred ccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252 304 CLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL 383 (450)
Q Consensus 304 s~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L 383 (450)
+.+.+.-..+...|-+..+=.++.+.++..-. . +....+-..-..-++.||-+|.+..-+++ +++++
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FA----------R-D~hd~aQG~~~d~LqRLvPlLdS~R~EAq--~i~AF 401 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFA----------R-DAHDYAQGRGPDDLQRLVPLLDSNRLEAQ--CIGAF 401 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhh----------h-hhhhhhccCChHHHHHhhhhhhcchhhhh--hhHHH
Confidence 88887766666666554333333333432111 1 11111111101235667777764333333 33333
Q ss_pred HHhcccC---chh-HHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 384 WSICKIA---PEE-CSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 384 ~~L~~~~---~~~-~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
.- |... ..+ ......+-|+|..|-.+..+. +...-+-|.+.|.++...
T Consensus 402 ~l-~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 402 YL-CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGEE 453 (832)
T ss_pred HH-HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhccc
Confidence 22 2211 111 122334679999999888766 566667788889888765
No 83
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.91 E-value=1.2e-05 Score=74.92 Aligned_cols=66 Identities=18% Similarity=0.394 Sum_probs=55.8
Q ss_pred eeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCc-CCCCCCcchHHHHHHHHHHHHh
Q 041252 70 FVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQE-LWDDSVTPNKTLYHLIHTWFSQ 135 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~-l~~~~l~~n~~L~~~I~~w~~~ 135 (450)
+.||+|+.++++|+-+ +|||+||..||+..+-...+.||.|... +--+.+.|+......|+.+...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 8999999999999977 7999999999999887768899999642 3346788998888888887663
No 84
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.89 E-value=0.0023 Score=63.44 Aligned_cols=275 Identities=16% Similarity=0.124 Sum_probs=182.0
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCCh----HHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 153 ELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGV----ALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 153 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i----~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
..+.+|...+.-....+...+..++...... .+.+.. ..|-..+.++++.....-++..|..+...++.|-.
T Consensus 118 ~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~ 193 (442)
T KOG2759|consen 118 SFLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYA 193 (442)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhe
Confidence 4566676666666665666666665432211 111111 22334455544566777888899999999999999
Q ss_pred ccCCCchHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252 229 LMQPAKVSLLVDMLNE--GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL 306 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~--~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~ 306 (450)
++...++..++..+.+ .+.+++-....+++-|+-.... .+.+...+.|+.|..+++...-..+.+-++.++.|+...
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~-ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHA-AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999943 3789999999999999655443 455677889999999998764566888999999999854
Q ss_pred h-------HHHHHHHhcCCHHHHHHhcCC--CChhHHHH-------HHHHHHHhcCChhhHHHHhc--------------
Q 041252 307 N-------EVRSLVVSIGAVPQLVELLPS--LDPDCLQL-------ALCILDALSSLPEGKLALKD-------------- 356 (450)
Q Consensus 307 ~-------~~~~~iv~~G~v~~Lv~lL~~--~~~~~~~~-------al~~L~~L~~~~e~r~~i~~-------------- 356 (450)
. +....|+..++.+.+-.+... +|+++.+. --.-...|++-++...++..
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 4 344566666666555444422 24444332 22223345554444443332
Q ss_pred -----------cCCChHHHHHHHhcCC-hHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHH
Q 041252 357 -----------CANTIPNTVRLLMRVS-EDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSA 424 (450)
Q Consensus 357 -----------~~g~i~~Lv~lL~~~s-~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~ 424 (450)
+-..+..|+++|...+ +..-.-|+.=+.....+.|+. ...+.+-|+=..++.++.+. ++.+|..|.
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g-k~vv~k~ggKe~vM~Llnh~-d~~Vry~AL 430 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG-KAVVEKYGGKERVMNLLNHE-DPEVRYHAL 430 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH-hHHHHHhchHHHHHHHhcCC-CchHHHHHH
Confidence 1125778888887755 566666777777777777743 34455789989999999888 788999988
Q ss_pred HHHHH-HHhhc
Q 041252 425 ELLKL-CSLNY 434 (450)
Q Consensus 425 ~lL~~-ls~~~ 434 (450)
-++.. +..+|
T Consensus 431 lavQ~lm~~~w 441 (442)
T KOG2759|consen 431 LAVQKLMVHNW 441 (442)
T ss_pred HHHHHHHhhcc
Confidence 76654 44334
No 85
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.88 E-value=0.00054 Score=67.73 Aligned_cols=229 Identities=15% Similarity=0.193 Sum_probs=160.1
Q ss_pred Hhhc-cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhh-CCCCChhhHHHHHHHHHhcCCCchhhhhccCCCc
Q 041252 157 TLKK-VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLL-GPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAK 234 (450)
Q Consensus 157 ~L~~-~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL-~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~ 234 (450)
.+.+ .+.+-..-|+++|..+... ++.|..++.+.|+..++..| ++..+-.++...+-.++.|+.++...+.+...+.
T Consensus 164 ~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~l 242 (442)
T KOG2759|consen 164 QLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDL 242 (442)
T ss_pred HHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccH
Confidence 3444 3455667788899988865 56999999999999999988 4444667899999999999998877777777899
Q ss_pred hHHHHHHhcCC-CHHHHHHHHHHHHHHhccCC---ChhhH---hhhhhHHHHHHHHHhc-CCCccchhHHHH--------
Q 041252 235 VSLLVDMLNEG-SVETKINCTRLIEKLMEEKD---FRPEI---VSSHRLLIGLMRLVKN-KRHPNGILPGLS-------- 298 (450)
Q Consensus 235 i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~---~~~~~---~~~~g~l~~Lv~lL~~-~~~~~~~~~al~-------- 298 (450)
|+.|.+++++. -..+-.-+..+++|+.+..+ ..+.+ +...+ ++.-++.|.. +.+.+-....+.
T Consensus 243 i~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rkysDEDL~~di~~L~e~L~~ 321 (442)
T KOG2759|consen 243 IQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEERKYSDEDLVDDIEFLTEKLKN 321 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999865 45566677888999976553 12222 22223 3333444443 322211111111
Q ss_pred HHHHhccChH------------------------HHHHHHh--cCCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCC-hhh
Q 041252 299 LLRSICLLNE------------------------VRSLVVS--IGAVPQLVELLPSL-DPDCLQLALCILDALSSL-PEG 350 (450)
Q Consensus 299 aL~~Ls~~~~------------------------~~~~iv~--~G~v~~Lv~lL~~~-~~~~~~~al~~L~~L~~~-~e~ 350 (450)
-...||+.++ |..++-+ ...+..|+.+|..+ ++.+..-|+.=+...... |++
T Consensus 322 svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g 401 (442)
T KOG2759|consen 322 SVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG 401 (442)
T ss_pred HHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH
Confidence 1122333322 3334443 24788999999665 477777888888887765 999
Q ss_pred HHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252 351 KLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK 388 (450)
Q Consensus 351 r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 388 (450)
+..+.+ -||=+.+.++|.+.+++++-+|+.++-.+..
T Consensus 402 k~vv~k-~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 402 KAVVEK-YGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred hHHHHH-hchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 999988 8999999999999999999999999877654
No 86
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.0028 Score=60.47 Aligned_cols=271 Identities=15% Similarity=0.170 Sum_probs=171.5
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHH-hhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMV-DEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL 229 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~-~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i 229 (450)
..+++..|.+.++.+|..|+.-+..++.. ..+.... +.-.++.+..++... .+ .+.|+.+|.|++..+..++.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHHHHHHH
Confidence 45788999999999999999888888755 2222222 223467788888764 22 778999999999999888888
Q ss_pred cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhh-----hhHHHHHHHHHhc-CCCccc-hhHHHHHHHH
Q 041252 230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSS-----HRLLIGLMRLVKN-KRHPNG-ILPGLSLLRS 302 (450)
Q Consensus 230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~-----~g~l~~Lv~lL~~-~~~~~~-~~~al~aL~~ 302 (450)
++- .+..+++.+.......-...+.+|.||+.+++....+... ..++..|++.+-+ +.+..+ ....+..+.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 766 7888888887665566677888999998877655444321 1234444444333 222212 3467778999
Q ss_pred hccChHHHHHHHhcCCHHH-HHHhcCCCChhH-HHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh-----------
Q 041252 303 ICLLNEVRSLVVSIGAVPQ-LVELLPSLDPDC-LQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM----------- 369 (450)
Q Consensus 303 Ls~~~~~~~~iv~~G~v~~-Lv~lL~~~~~~~-~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~----------- 369 (450)
|+..+..|..+.+...++. -+.-+.+.+..+ +...+++|.|.|-.......+.+ -.+..|.-+|.
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~--e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD--ESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc--chHHHHHHHHhhcCCccccCHH
Confidence 9999999988887654332 222223333333 45568889998866555555544 12223322222
Q ss_pred -------------c-----CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Q 041252 370 -------------R-----VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS-GCNPVLKQRSAELLKLC 430 (450)
Q Consensus 370 -------------~-----~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s-~~~~~~k~~A~~lL~~l 430 (450)
. .++.++..-+.+|.-||.-.. -++.+...|+- .++.-+.. ..+++.++++-.+..++
T Consensus 237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~--GRe~lR~kgvY-pilRElhk~e~ded~~~ace~vvq~L 313 (353)
T KOG2973|consen 237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA--GREVLRSKGVY-PILRELHKWEEDEDIREACEQVVQML 313 (353)
T ss_pred HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH--hHHHHHhcCch-HHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 1 135677778888888887442 23333455664 45555544 34577777777777665
Q ss_pred Hh
Q 041252 431 SL 432 (450)
Q Consensus 431 s~ 432 (450)
-.
T Consensus 314 v~ 315 (353)
T KOG2973|consen 314 VR 315 (353)
T ss_pred Hh
Confidence 44
No 87
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.87 E-value=1.1e-05 Score=61.41 Aligned_cols=39 Identities=33% Similarity=0.652 Sum_probs=32.1
Q ss_pred CcCCCCCCCCC-------------eeCCCCCcccHHHHHHHHhcCCCCCCCcC
Q 041252 72 CPISLEPMQDP-------------VTLCTGQTYERSNILKWFSLGRYTCPTTM 111 (450)
Q Consensus 72 Cpi~~~~m~dP-------------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~ 111 (450)
|+||++.|.|| +...|||.|-..||++|++. +.+||.||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 99999999543 23579999999999999997 56999996
No 88
>PF05536 Neurochondrin: Neurochondrin
Probab=97.86 E-value=0.00033 Score=73.94 Aligned_cols=154 Identities=23% Similarity=0.314 Sum_probs=119.5
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCC----hhhHhhhhhHHHHHHHHHhcCCCc------cchhHHHHHHHH
Q 041252 233 AKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDF----RPEIVSSHRLLIGLMRLVKNKRHP------NGILPGLSLLRS 302 (450)
Q Consensus 233 g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~----~~~~~~~~g~l~~Lv~lL~~~~~~------~~~~~al~aL~~ 302 (450)
..+...+.+|++.+.+-|-.+..++..+...++. ++.+..+.| ..-|-++|+.+..+ ..+.-|+..|..
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4567778889988877777777778888755442 223455556 57788888874322 234577788889
Q ss_pred hccChHHH--HHHHhcCCHHHHHHhcCCCCh-hHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHH
Q 041252 303 ICLLNEVR--SLVVSIGAVPQLVELLPSLDP-DCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYA 379 (450)
Q Consensus 303 Ls~~~~~~--~~iv~~G~v~~Lv~lL~~~~~-~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A 379 (450)
+|..++.. ..++ +-||.|++++.+.+. ++...|+.+|..++.+++|+..+.+ .|+|+.|++.+.+ .+...+.|
T Consensus 84 f~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E~A 159 (543)
T PF05536_consen 84 FCRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSFQMEIA 159 (543)
T ss_pred HcCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHHHH
Confidence 99877654 3343 569999999977766 9999999999999999999999999 8999999999987 66778999
Q ss_pred HHHHHHhcccCc
Q 041252 380 LSILWSICKIAP 391 (450)
Q Consensus 380 ~~~L~~L~~~~~ 391 (450)
+.+|.+++....
T Consensus 160 l~lL~~Lls~~~ 171 (543)
T PF05536_consen 160 LNLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHHhcc
Confidence 999999877554
No 89
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.0014 Score=65.08 Aligned_cols=265 Identities=15% Similarity=0.126 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcH---------HHHHHHHhhCCh
Q 041252 123 KTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHA---------SARKTMVDEGGV 193 (450)
Q Consensus 123 ~~L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~---------~~r~~i~~~G~i 193 (450)
..|...||++-.-...|..-..--....++.++.+|...+.++-...+.-|+.++..+. ..-.++++.+.+
T Consensus 99 ~dLhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl 178 (536)
T KOG2734|consen 99 VDLHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL 178 (536)
T ss_pred ccHHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence 34677787775543322211111112457889999999888888888888888876441 234567788889
Q ss_pred HHHHhhhCCCCChhhH------HHHHHHHHhcCC-CchhhhhccCCCchHHHHHHhcCC--CHHHHHHHHHHHHHHhccC
Q 041252 194 ALISSLLGPFTSHAVG------SEAVGVLVNLTL-DSESKTNLMQPAKVSLLVDMLNEG--SVETKINCTRLIEKLMEEK 264 (450)
Q Consensus 194 ~~Lv~lL~~~~~~~v~------~~Al~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~aa~~L~~La~~~ 264 (450)
+.|+.-+.+. ++.+. .++++++-|+.. .++....+++.|.+.-|+.-+... -...+..|..+|.-+..++
T Consensus 179 aLLvqnveRL-dEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s 257 (536)
T KOG2734|consen 179 ALLVQNVERL-DESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNS 257 (536)
T ss_pred HHHHHHHHHh-hhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccC
Confidence 9998877664 44444 346677777554 456666777777776666644322 3455778888888776666
Q ss_pred CChhhHhhhhhHHHHHHHHHhc--CCCc------cchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHH
Q 041252 265 DFRPEIVSSHRLLIGLMRLVKN--KRHP------NGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQL 336 (450)
Q Consensus 265 ~~~~~~~~~~g~l~~Lv~lL~~--~~~~------~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~ 336 (450)
+.++.......++..|++-+.- ..+| +..++...+|+.+-..+.||..++...++....-+++. ....+..
T Consensus 258 ~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~S 336 (536)
T KOG2734|consen 258 DENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGS 336 (536)
T ss_pred chhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhh
Confidence 6566666777777877775532 1122 22346666677777899999999998888777766765 5567888
Q ss_pred HHHHHHHhcCCh---hhHHHHhccCCChHHHHHHHhc---------CC-hHHHHHHHHHHHHhcccC
Q 041252 337 ALCILDALSSLP---EGKLALKDCANTIPNTVRLLMR---------VS-EDCTQYALSILWSICKIA 390 (450)
Q Consensus 337 al~~L~~L~~~~---e~r~~i~~~~g~i~~Lv~lL~~---------~s-~~~~e~A~~~L~~L~~~~ 390 (450)
++++|.....++ .++..+++ .+|+..+.-+.+. .+ ....|+.+++||.+-.+.
T Consensus 337 alkvLd~am~g~~gt~~C~kfVe-~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 337 ALKVLDHAMFGPEGTPNCNKFVE-ILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred HHHHHHHHHhCCCchHHHHHHHH-HHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 999999988775 47888888 7899988888772 22 467789999999886644
No 90
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.00038 Score=73.36 Aligned_cols=197 Identities=19% Similarity=0.197 Sum_probs=151.1
Q ss_pred CchHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcC-CCccchhHHHHHHHHhccChH--
Q 041252 233 AKVSLLVDMLNEG-SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNK-RHPNGILPGLSLLRSICLLNE-- 308 (450)
Q Consensus 233 g~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~-~~~~~~~~al~aL~~Ls~~~~-- 308 (450)
..|+.|++-+.+. -.+-|..|+..|..++.. .+. .++.. ++++|+..|... .+++....++.++.++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk--YR~-~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK--YRE-EVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH--HHH-HHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 4588888888755 678899999999999743 222 23334 489999999754 578889999999999986653
Q ss_pred ----H-H----------HHHH-hcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC--hhhHHHHhccCCChHHHHHHHhc
Q 041252 309 ----V-R----------SLVV-SIGAVPQLVELLPSLDPDCLQLALCILDALSSL--PEGKLALKDCANTIPNTVRLLMR 370 (450)
Q Consensus 309 ----~-~----------~~iv-~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e~r~~i~~~~g~i~~Lv~lL~~ 370 (450)
+ + ..++ ..+-|..|+..+...|-.++..++..|.+|-++ .+-+.++..++-||..++.+|..
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 1 1 1222 357899999999988999999999999999766 78899988889999999999998
Q ss_pred CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHc-CCCH--HHHHHHHHHH-HHHHhhc
Q 041252 371 VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS-GCNP--VLKQRSAELL-KLCSLNY 434 (450)
Q Consensus 371 ~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s-~~~~--~~k~~A~~lL-~~ls~~~ 434 (450)
.-+.++..|+-.|..|.+.++ ..++.++=.+++..|+.++.. |+.+ .+-+-+..+| .+|..|.
T Consensus 178 srE~IRNe~iLlL~eL~k~n~-~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNS-SIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred hhhhhchhHHHHHHHHHccCc-hHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 888899999999999999886 556666657899999999964 3222 3445555544 4466663
No 91
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.84 E-value=0.00025 Score=70.70 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=122.5
Q ss_pred hhccCCCchHHHHHHhcCCCHHH--HHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252 227 TNLMQPAKVSLLVDMLNEGSVET--KINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC 304 (450)
Q Consensus 227 ~~i~~~g~i~~Lv~lL~~~~~~~--~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls 304 (450)
..|...|++..|++++...+.+. |..|+.+|..+.... . .+.+...| +..++.+-+....++.....++.|.++-
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae-N-~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE-N-RDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh-h-hhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 45667899999999999886555 999999999884322 1 22233333 3444444444445667788999999998
Q ss_pred cC-hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC--hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHH
Q 041252 305 LL-NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL--PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALS 381 (450)
Q Consensus 305 ~~-~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~ 381 (450)
.| ++.+..++++|++++++--.+..++.+...|.-+|.|.+-+ .+.+..+++ ..+-+-|.-+-+..++-.+-+|+-
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcchHHHHHHHHHH
Confidence 54 56899999999999999888888999999999999999855 678888887 567777777777777788889988
Q ss_pred HHHHhcccC
Q 041252 382 ILWSICKIA 390 (450)
Q Consensus 382 ~L~~L~~~~ 390 (450)
++..|+.+.
T Consensus 330 AV~vlat~K 338 (832)
T KOG3678|consen 330 AVAVLATNK 338 (832)
T ss_pred HHhhhhhhh
Confidence 888877654
No 92
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.83 E-value=1.2e-05 Score=81.33 Aligned_cols=69 Identities=23% Similarity=0.407 Sum_probs=56.6
Q ss_pred CCCCeeeCcCCCCCCCCCee-CCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcc-hHHHHHHHHHHHH
Q 041252 65 EIPSVFVCPISLEPMQDPVT-LCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTP-NKTLYHLIHTWFS 134 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~-n~~L~~~I~~w~~ 134 (450)
++..++.||+|..++.||+. +.|||.||+.||.+|... +..||.|+..+......+ ...++..+..|..
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i 87 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPI 87 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhccc
Confidence 36678999999999999998 499999999999999998 899999988876655554 4456666766633
No 93
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.83 E-value=3e-05 Score=51.84 Aligned_cols=41 Identities=29% Similarity=0.331 Sum_probs=38.0
Q ss_pred ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252 347 LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK 388 (450)
Q Consensus 347 ~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 388 (450)
+++++..+++ .|+||.|+++|.+.+..+++.|+++|++|+.
T Consensus 1 ~~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVE-AGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHH-TTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-cccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4789999999 8999999999999999999999999999973
No 94
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.82 E-value=0.00021 Score=74.07 Aligned_cols=145 Identities=11% Similarity=0.066 Sum_probs=110.4
Q ss_pred CCCHHHHHHHHHHHHHHhccCC-ChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHHHHHHhcCCHHH
Q 041252 244 EGSVETKINCTRLIEKLMEEKD-FRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQ 321 (450)
Q Consensus 244 ~~~~~~~~~aa~~L~~La~~~~-~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~ 321 (450)
..+...+..|+..+.+++..-+ .+.. .....+..+|++++.++ +..++..++++|.|+. .....|..+.+.|+|+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg-~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~ 465 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTG-LKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI 465 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcC-CccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence 3466777777777777753211 1111 34456789999999776 5678889999999998 45668999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhcCC-hhh-HHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCc
Q 041252 322 LVELLPSLDPDCLQLALCILDALSSL-PEG-KLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAP 391 (450)
Q Consensus 322 Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~-r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 391 (450)
+..++.+.+..++..++++|+++.-+ ++- +.+... -=+..-++.+.......++|.+...|.|+...+.
T Consensus 466 l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~-ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 466 LESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLA-KIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHH-HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 99999999999999999999999855 333 333333 2345566777777889999999999999988764
No 95
>PTZ00429 beta-adaptin; Provisional
Probab=97.81 E-value=0.0042 Score=67.72 Aligned_cols=251 Identities=16% Similarity=0.098 Sum_probs=151.8
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
|-+.+|-..|.+.+...+..|++.+-.......+.- -+.+-++.++.+. +.+++.-.--.|.+.+........
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~pelal 104 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPST-DLELKKLVYLYVLSTARLQPEKAL 104 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccChHHHH
Confidence 446678888888777777788877554432221111 1345566677654 666666555555555543222111
Q ss_pred ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH
Q 041252 229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE 308 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~ 308 (450)
+ ++..+.+=+.+.++.+|..|.++|..+-.. .++ .-++..+.+.+.+. ++-+++.|+-++..+-....
T Consensus 105 L----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~--e~l~~~lkk~L~D~-~pYVRKtAalai~Kly~~~p 172 (746)
T PTZ00429 105 L----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVL--EYTLEPLRRAVADP-DPYVRKTAAMGLGKLFHDDM 172 (746)
T ss_pred H----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCc
Confidence 2 366677777888999999988887776321 111 22456677777775 79999999999998864322
Q ss_pred HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252 309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK 388 (450)
Q Consensus 309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 388 (450)
..+.+.|.++.|.++|.+.++.++.+|+.+|..+......+-.+. .+.+..|+..|...++-.+-..+.+|. .
T Consensus 173 --elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~--~~~~~~Ll~~L~e~~EW~Qi~IL~lL~---~ 245 (746)
T PTZ00429 173 --QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESS--NEWVNRLVYHLPECNEWGQLYILELLA---A 245 (746)
T ss_pred --ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHH--HHHHHHHHHHhhcCChHHHHHHHHHHH---h
Confidence 233467889999999999999999999999999986532222222 234556666665556555555555553 3
Q ss_pred cCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041252 389 IAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKL 429 (450)
Q Consensus 389 ~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ 429 (450)
..|.+. .++ ...+..+...+++. ++.+--.|..++-.
T Consensus 246 y~P~~~-~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~ 282 (746)
T PTZ00429 246 QRPSDK-ESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVVAN 282 (746)
T ss_pred cCCCCc-HHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 322211 111 23445555556665 44444444444433
No 96
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.00066 Score=74.53 Aligned_cols=232 Identities=16% Similarity=0.142 Sum_probs=148.3
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhhhhcc
Q 041252 152 SELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESKTNLM 230 (450)
Q Consensus 152 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k~~i~ 230 (450)
+.+-.+|.+.+...|..|+.+|..++.+..+.-.... ...++.++..|... ...|+..|+.++..++.+- ..-..-.
T Consensus 351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~ 428 (1075)
T KOG2171|consen 351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKH 428 (1075)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence 3445566788888999999999998876543211110 13456667777765 6789999999999998753 2222223
Q ss_pred CCCchHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHH
Q 041252 231 QPAKVSLLVDMLNEG-SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEV 309 (450)
Q Consensus 231 ~~g~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~ 309 (450)
....++.|+..+.+. ++.++.+|+.+|.++++..+...-.-.=.+++..++.+|..++.+.+++.++.+|...+..-+.
T Consensus 429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 355677888888865 8899999999999998765432211122355564555666666788999999999998854332
Q ss_pred HHHHHhcCCHHHHHHhcCCCC-hhHHHHHHHHHHHhcC--ChhhHHHHhccCCChHHHHHHHhcC-------ChHHHHHH
Q 041252 310 RSLVVSIGAVPQLVELLPSLD-PDCLQLALCILDALSS--LPEGKLALKDCANTIPNTVRLLMRV-------SEDCTQYA 379 (450)
Q Consensus 310 ~~~iv~~G~v~~Lv~lL~~~~-~~~~~~al~~L~~L~~--~~e~r~~i~~~~g~i~~Lv~lL~~~-------s~~~~e~A 379 (450)
.-.=-=.-.+|.|..+|...+ .+.++...+++..++. ..-||..|... ...+++++... +....++-
T Consensus 509 ~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~---a~eliqll~~~~~~~~~~dd~~~sy~ 585 (1075)
T KOG2171|consen 509 KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPL---AEELIQLLLELQGSDQDDDDPLRSYM 585 (1075)
T ss_pred hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHh---HHHHHHHHHhhcccchhhccccHHHH
Confidence 211111245778888886654 6666666666665553 35577777652 33444444332 34455666
Q ss_pred HHHHHHhcc
Q 041252 380 LSILWSICK 388 (450)
Q Consensus 380 ~~~L~~L~~ 388 (450)
..+..++|+
T Consensus 586 ~~~warmc~ 594 (1075)
T KOG2171|consen 586 IAFWARMCR 594 (1075)
T ss_pred HHHHHHHHH
Confidence 666666665
No 97
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.00064 Score=64.67 Aligned_cols=193 Identities=18% Similarity=0.185 Sum_probs=134.6
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHH
Q 041252 235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVV 314 (450)
Q Consensus 235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv 314 (450)
.-.++.+|.+.++.+|..|...+..|+.. ..+...-.+...++.+.+++++.. + ...|+.+|.|++..+..++.+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhhHHHHHHHH
Confidence 34678899999999999999999988655 333222244567888999988752 3 7789999999999999999999
Q ss_pred hcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhc-cC----CChHHHHHHHhcCCh---HHHHHHHHHHHHh
Q 041252 315 SIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKD-CA----NTIPNTVRLLMRVSE---DCTQYALSILWSI 386 (450)
Q Consensus 315 ~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~-~~----g~i~~Lv~lL~~~s~---~~~e~A~~~L~~L 386 (450)
+. .+..++.++.+........++.+|.||+..+....++.. .. .++..++...-..+- .--.+-+.++.++
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 88 888888888877678899999999999998765555432 12 466666666655442 2346677788888
Q ss_pred cccCchhHHHHHHhcC--hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252 387 CKIAPEECSSAAVDAG--LAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT 435 (450)
Q Consensus 387 ~~~~~~~~~~~~~~~G--~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~ 435 (450)
++.... +....+.. ...+|+.+-+ ..+..-|...+..||+|.....
T Consensus 160 s~~~~g--R~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~ 207 (353)
T KOG2973|consen 160 SQFEAG--RKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAK 207 (353)
T ss_pred hhhhhh--hhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccch
Confidence 876532 23333322 2233333333 3355566777789999876643
No 98
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.8e-05 Score=79.12 Aligned_cols=71 Identities=23% Similarity=0.391 Sum_probs=58.4
Q ss_pred cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC-----CCCcchHHHHHHHHHHHHh
Q 041252 64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD-----DSVTPNKTLYHLIHTWFSQ 135 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~-----~~l~~n~~L~~~I~~w~~~ 135 (450)
..++++|-|-||...+.+||+++|||+||+.||.+.+.. ...||.|+.++.. ....+|+.++.+|..|+..
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 467899999999999999999999999999999997774 6779999988764 1223477777888877664
No 99
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.4e-05 Score=84.08 Aligned_cols=54 Identities=13% Similarity=0.295 Sum_probs=48.1
Q ss_pred CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcc
Q 041252 68 SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTP 121 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~ 121 (450)
.-++||+|..=.+|-|++.|||.||..||..-+......||.|+..|...++.+
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 457999999999999999999999999999999977889999999987766543
No 100
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.62 E-value=0.018 Score=57.94 Aligned_cols=273 Identities=15% Similarity=0.107 Sum_probs=179.0
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCC-ChhhHHHHHHHHHhcCCCchhhhhc
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFT-SHAVGSEAVGVLVNLTLDSESKTNL 229 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~-~~~v~~~Al~~L~~Ls~~~~~k~~i 229 (450)
.+.+..++-+.+.++|..+.+.+|.+..+ ...-+.+.+.+.--.++..|.... .+.-+++|+..++.+.....+.. .
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~-~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK-E 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc-c
Confidence 34444444444588999999999998854 556677777775556667675432 34567789999887544322222 2
Q ss_pred cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHH
Q 041252 230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEV 309 (450)
Q Consensus 230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~ 309 (450)
+..|.+..+|.+..+.+...+..|..+|.+|+-.++ +++...|++..|++.+-++ ..+.....+.++..+-.++..
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~-~~~~~~~l~~~lL~lLd~p~t 180 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDG-SFSISESLLDTLLYLLDSPRT 180 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhc-cHhHHHHHHHHHHHHhCCcch
Confidence 367889999999999999999999999999986654 3566778899999998875 344677788888888888888
Q ss_pred HHHHHhcCCHHHHHHhcCCC-------Ch--hHHHHHHHHHHHhcCChhhHHHHhcc-CCChHHHHHHHhcCChHHHHHH
Q 041252 310 RSLVVSIGAVPQLVELLPSL-------DP--DCLQLALCILDALSSLPEGKLALKDC-ANTIPNTVRLLMRVSEDCTQYA 379 (450)
Q Consensus 310 ~~~iv~~G~v~~Lv~lL~~~-------~~--~~~~~al~~L~~L~~~~e~r~~i~~~-~g~i~~Lv~lL~~~s~~~~e~A 379 (450)
|..+...--+..++.-+.+. +. +....+..++..+-.+=.|--.+..+ ..++..||..|...++++++..
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~I 260 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAI 260 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHH
Confidence 87665433344444444222 22 23444444444444433333333321 2477778887777776777766
Q ss_pred HHHHHHhcc------------------cC--------------------------ch---hH----HHHHHhcChHHHHH
Q 041252 380 LSILWSICK------------------IA--------------------------PE---EC----SSAAVDAGLAAKLF 408 (450)
Q Consensus 380 ~~~L~~L~~------------------~~--------------------------~~---~~----~~~~~~~G~i~~L~ 408 (450)
+.+|..+-. .. .+ +. ....+++|.++.|+
T Consensus 261 ldll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~ 340 (371)
T PF14664_consen 261 LDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALV 340 (371)
T ss_pred HHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHH
Confidence 666665310 00 00 00 12235899999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 041252 409 LVIQSGCNPVLKQRSAELLKL 429 (450)
Q Consensus 409 ~ll~s~~~~~~k~~A~~lL~~ 429 (450)
.+..+..++....+|.-+|.-
T Consensus 341 ~li~~~~d~~l~~KAtlLL~e 361 (371)
T PF14664_consen 341 ELIESSEDSSLSRKATLLLGE 361 (371)
T ss_pred HHHhcCCCchHHHHHHHHHHH
Confidence 999887677888888877764
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.61 E-value=0.00018 Score=70.83 Aligned_cols=51 Identities=25% Similarity=0.355 Sum_probs=45.1
Q ss_pred eeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcc
Q 041252 70 FVCPISLEPMQDPVTLC-TGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTP 121 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~ 121 (450)
+.|.|++++-++||+-+ +||.|+|+-|++++.+ +.+||.++++++.++++|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 57999999999999876 9999999999999997 678999999988765544
No 102
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.56 E-value=0.00072 Score=63.31 Aligned_cols=186 Identities=15% Similarity=0.123 Sum_probs=112.2
Q ss_pred cCCCHHHHHHHHHHHHHHhccC---CChhhHhhhh-hHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCC
Q 041252 243 NEGSVETKINCTRLIEKLMEEK---DFRPEIVSSH-RLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGA 318 (450)
Q Consensus 243 ~~~~~~~~~~aa~~L~~La~~~---~~~~~~~~~~-g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~ 318 (450)
.+.+-+.|..|..-|+.+...+ +....++... .++..+...+.+. ...+...|+.++..|+..-.....-.-...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 4568899999999999997655 2222222221 2344555566654 356788899999988844332222223447
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCChh-hHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCc---hhH
Q 041252 319 VPQLVELLPSLDPDCLQLALCILDALSSLPE-GKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAP---EEC 394 (450)
Q Consensus 319 v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e-~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~---~~~ 394 (450)
+|.|+..+.+++.-+++.|..+|..++.+-. ....+ ++.+...+.+.++.++..++..|..+....+ ...
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~------~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL------LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH------HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 8899999988888999999999999997643 12111 3355666677889999999999988876665 111
Q ss_pred HHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCC
Q 041252 395 SSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTD 436 (450)
Q Consensus 395 ~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~ 436 (450)
.....-..+++.+...+..+ ++.+|+.|..++..+..++++
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-H
T ss_pred cccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCH
Confidence 11111134566667777666 899999999999999888653
No 103
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.06 Score=53.91 Aligned_cols=238 Identities=17% Similarity=0.158 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc------hh----hhhccCCCchHH
Q 041252 168 QALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS------ES----KTNLMQPAKVSL 237 (450)
Q Consensus 168 ~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~------~~----k~~i~~~g~i~~ 237 (450)
..++.+..++ .-|+.-..+++.++|+.|+.+|+.. +.++.-..+..|..|...+ +. -..+++.+.++.
T Consensus 103 d~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 103 DIIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 3555666555 3466667889999999999999986 6778888888888886532 11 235678899999
Q ss_pred HHHHhcCCCH------HHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCcc-chhHHHHHHHHhc-cChHH
Q 041252 238 LVDMLNEGSV------ETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPN-GILPGLSLLRSIC-LLNEV 309 (450)
Q Consensus 238 Lv~lL~~~~~------~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~-~~~~al~aL~~Ls-~~~~~ 309 (450)
|+.-+..=+. ....+...++.|+..-.+.....+.+.|.+.-|+.-+..+...+ -...|...|.-+- ..++|
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 9987763222 33455667788887665555555556677776666444432222 2456666776665 44558
Q ss_pred HHHHHhcCCHHHHHHhcCC---C------ChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHH
Q 041252 310 RSLVVSIGAVPQLVELLPS---L------DPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYAL 380 (450)
Q Consensus 310 ~~~iv~~G~v~~Lv~lL~~---~------~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~ 380 (450)
+.......+|..+++-+.- . ..+.-++-...|+.+-..++||..+.. +.|++...-+ .+.....+..|+
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~-~EGlqLm~Lm-lr~Kk~sr~Sal 338 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLK-GEGLQLMNLM-LREKKVSRGSAL 338 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhc-cccHHHHHHH-HHHHHHhhhhHH
Confidence 9999999999999998832 1 245667777777777778999999998 6778655444 444555667788
Q ss_pred HHHHHhcccCch-hHHHHHHhcChHHHHHH
Q 041252 381 SILWSICKIAPE-ECSSAAVDAGLAAKLFL 409 (450)
Q Consensus 381 ~~L~~L~~~~~~-~~~~~~~~~G~i~~L~~ 409 (450)
++|-......+. ......++.++...+..
T Consensus 339 kvLd~am~g~~gt~~C~kfVe~lGLrtiF~ 368 (536)
T KOG2734|consen 339 KVLDHAMFGPEGTPNCNKFVEILGLRTIFP 368 (536)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHhHHHHHH
Confidence 888877665542 22344556555565553
No 104
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.043 Score=52.95 Aligned_cols=269 Identities=13% Similarity=0.096 Sum_probs=168.4
Q ss_pred chHHHHHHHHHHHHHHHHcHHH----HHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHH
Q 041252 162 KGQARVQALKELHQIAAAHASA----RKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSL 237 (450)
Q Consensus 162 ~~~~~~~Al~~L~~l~~~~~~~----r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~ 237 (450)
+..++.-|++.+.-+..+.+.| -..++.+|..+.++..+... +.++...|+..+..++..+.....|.+......
T Consensus 95 dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge-ddeVAkAAiesikrialfpaaleaiFeSellDd 173 (524)
T KOG4413|consen 95 DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-DDEVAKAAIESIKRIALFPAALEAIFESELLDD 173 (524)
T ss_pred cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcHHHHHHhcccccCCh
Confidence 3344444555555444443322 23456778899999999876 788999999999999999988888887765554
Q ss_pred HH--HHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHh
Q 041252 238 LV--DMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVS 315 (450)
Q Consensus 238 Lv--~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~ 315 (450)
+- .+--..+.-+|.....++-.+.+.......-....|.+..|..=++...+.-++.+++.....|+..+..+.-+.+
T Consensus 174 lhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ 253 (524)
T KOG4413|consen 174 LHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ 253 (524)
T ss_pred HHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch
Confidence 33 3333345566777777777776544333333455677777776666544566778999999999988888888889
Q ss_pred cCCHHHHHHhcCCC--ChhHHHHHHHHHHHhcCC----hhhHHHHhcc-CCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252 316 IGAVPQLVELLPSL--DPDCLQLALCILDALSSL----PEGKLALKDC-ANTIPNTVRLLMRVSEDCTQYALSILWSICK 388 (450)
Q Consensus 316 ~G~v~~Lv~lL~~~--~~~~~~~al~~L~~L~~~----~e~r~~i~~~-~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 388 (450)
.|.|+.+-.++... ++--+-.++.....+-++ +-.-+++++. .-+|....+.+...++..++.|+.+|..+..
T Consensus 254 eglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS 333 (524)
T KOG4413|consen 254 EGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS 333 (524)
T ss_pred hhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC
Confidence 99999999998543 443444444444433332 1112222220 0134555666666788999999999999877
Q ss_pred cCchhHHHHHHhcCh--HHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 389 IAPEECSSAAVDAGL--AAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 389 ~~~~~~~~~~~~~G~--i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
+.. -+......|- ...++.-..+.+...-++.+...|..++..
T Consensus 334 nte--GadlllkTgppaaehllarafdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 334 NTE--GADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred Ccc--hhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence 653 2344445553 444444333331223345555566665544
No 105
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.42 E-value=0.00035 Score=46.19 Aligned_cols=40 Identities=43% Similarity=0.551 Sum_probs=36.6
Q ss_pred hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252 307 NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS 346 (450)
Q Consensus 307 ~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~ 346 (450)
++++..+++.|+++.|+++|.+.+.+++..++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3588889999999999999998899999999999999973
No 106
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.019 Score=59.72 Aligned_cols=270 Identities=17% Similarity=0.129 Sum_probs=170.1
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHH-HHHHHhcCCCchhhhhc
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEA-VGVLVNLTLDSESKTNL 229 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~A-l~~L~~Ls~~~~~k~~i 229 (450)
.+.+.+.++..+...+..|...+..+..+. .-..+.+.+.+..|...+....+..-++.+ +....+ . .+-...
T Consensus 136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~-~---~~Lg~~ 209 (569)
T KOG1242|consen 136 LELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAA-Q---GNLGPP 209 (569)
T ss_pred HHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHH-H---HhcCCC
Confidence 455666677667778888888888887653 345666778888888888765333333311 111111 1 111244
Q ss_pred cCCCchHHHHHHhc---CCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252 230 MQPAKVSLLVDMLN---EGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL 306 (450)
Q Consensus 230 ~~~g~i~~Lv~lL~---~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~ 306 (450)
.++..++.+-.+|. +....+|..|..+...+...-+. ..-.-+++.++.-+... ....+.+++..|..++.+
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~----~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ 284 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA----YAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADC 284 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc----chhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHh
Confidence 56777777777665 34678888887777776432111 01122345555444443 356788999999999877
Q ss_pred hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHH----------Hhc--------------------
Q 041252 307 NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLA----------LKD-------------------- 356 (450)
Q Consensus 307 ~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~----------i~~-------------------- 356 (450)
....-......+||.+.+.|.+..+++++.+..+|..+++.-+|-.. +.+
T Consensus 285 ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~ 364 (569)
T KOG1242|consen 285 APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAE 364 (569)
T ss_pred chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeee
Confidence 77777777889999999999999999999999999988864222111 111
Q ss_pred -cCCChHHHHHHHhcC----ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHH-HHH
Q 041252 357 -CANTIPNTVRLLMRV----SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELL-KLC 430 (450)
Q Consensus 357 -~~g~i~~Lv~lL~~~----s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL-~~l 430 (450)
.+-.+..++-+|.++ +...++.++.+++|+|..-++.....-.=.-++|-|-..+... .|++|.-|+..| .++
T Consensus 365 V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~-~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 365 VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA-VPEVRAVAARALGALL 443 (569)
T ss_pred ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-ChhHHHHHHHHHHHHH
Confidence 012344455555443 5667788999999999877433211101123556666666666 789998888887 444
Q ss_pred Hh
Q 041252 431 SL 432 (450)
Q Consensus 431 s~ 432 (450)
.+
T Consensus 444 e~ 445 (569)
T KOG1242|consen 444 ER 445 (569)
T ss_pred HH
Confidence 33
No 107
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.0077 Score=65.68 Aligned_cols=223 Identities=14% Similarity=0.077 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHh--cCCCchhhhhccCCCchHHHHHHhc
Q 041252 166 RVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVN--LTLDSESKTNLMQPAKVSLLVDMLN 243 (450)
Q Consensus 166 ~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~--Ls~~~~~k~~i~~~g~i~~Lv~lL~ 243 (450)
|..|+.-|..+..-.+=.-..-..-|..|.++++|++.. .+ ....+-.++. |+.++.++..+++.++-...+.+|.
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a-~E-LrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSA-RE-LRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccch-Hh-hhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 344555444433222212222235588999999998863 33 3445555555 7888888888988877777777777
Q ss_pred C-C--CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHHHHHHhcCCH
Q 041252 244 E-G--SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVRSLVVSIGAV 319 (450)
Q Consensus 244 ~-~--~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v 319 (450)
. + +++-|..|+.+|..+..+-..-++..-+.+.+..=+..|+++.++-.+.-.+-+|..|= ..+++|..=++.++.
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 6 3 56888899999999976644333334445566655666666423444555666777774 557788888899999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhcCC-----hhhHHHHh----------ccCCChH----HHHHHHhcCChHHHHHHH
Q 041252 320 PQLVELLPSLDPDCLQLALCILDALSSL-----PEGKLALK----------DCANTIP----NTVRLLMRVSEDCTQYAL 380 (450)
Q Consensus 320 ~~Lv~lL~~~~~~~~~~al~~L~~L~~~-----~e~r~~i~----------~~~g~i~----~Lv~lL~~~s~~~~e~A~ 380 (450)
+.|+.+|++.-++++..|+-+|..+-++ ++....+- ..+..|+ .++.++..+++-++...+
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 9999999999999999999999998774 33222220 0012222 566666777777666666
Q ss_pred HHHHHhcccC
Q 041252 381 SILWSICKIA 390 (450)
Q Consensus 381 ~~L~~L~~~~ 390 (450)
-+|..+....
T Consensus 725 v~ls~~~~g~ 734 (1387)
T KOG1517|consen 725 VALSHFVVGY 734 (1387)
T ss_pred HHHHHHHHhh
Confidence 6666555433
No 108
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.38 E-value=0.014 Score=59.39 Aligned_cols=152 Identities=14% Similarity=-0.038 Sum_probs=101.9
Q ss_pred cHHHHHHHhhc-cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 150 RASELLGTLKK-VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 150 ~i~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
.++.++..|.. .+.+++..++..+... +++ .++..|+..|... +..++..++.+|..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~---------~~~~~L~~~L~d~-~~~vr~aaa~ALg~---------- 112 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ--EDA---------LDLRSVLAVLQAG-PEGLCAGIQAALGW---------- 112 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc--CCh---------HHHHHHHHHhcCC-CHHHHHHHHHHHhc----------
Confidence 35667778854 4455555444444311 111 1278888888764 56688888888763
Q ss_pred ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH
Q 041252 229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE 308 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~ 308 (450)
+...+..+.|+.+|++.++.++..+..++...- ....+.|..+|++. ++.+...|+++|..|..
T Consensus 113 i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~-d~~Vra~A~raLG~l~~--- 176 (410)
T TIGR02270 113 LGGRQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHE-DALVRAAALRALGELPR--- 176 (410)
T ss_pred CCchHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCC-CHHHHHHHHHHHHhhcc---
Confidence 334667888889998888888877765555421 11236777777765 67888888888877642
Q ss_pred HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252 309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS 346 (450)
Q Consensus 309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~ 346 (450)
..+++.|...+.+.++.++..|+.+|..+-.
T Consensus 177 -------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 177 -------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred -------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 3455667777888889999999988877644
No 109
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0001 Score=69.29 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=43.3
Q ss_pred eeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCC
Q 041252 70 FVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDD 117 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 117 (450)
-.|+||++-|.-||.+.|+|.||.-||+--...+..+||+|+.+++++
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 459999999999999999999999999998777678899999998653
No 110
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.25 E-value=0.00088 Score=52.41 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=66.4
Q ss_pred hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhh
Q 041252 193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVS 272 (450)
Q Consensus 193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~ 272 (450)
||.|++.|....+..++..|+.+|..+. ...+++.|+.+++++++.+|..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 5788998843447899999999998432 2356999999999999999999999998772
Q ss_pred hhhHHHHHHHHHhcCCCccchhHHHHHH
Q 041252 273 SHRLLIGLMRLVKNKRHPNGILPGLSLL 300 (450)
Q Consensus 273 ~~g~l~~Lv~lL~~~~~~~~~~~al~aL 300 (450)
....++.|.+++.++.+..++..|+.+|
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 3446789999988764444567777766
No 111
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.23 E-value=0.002 Score=50.36 Aligned_cols=86 Identities=22% Similarity=0.309 Sum_probs=67.3
Q ss_pred hHHHHHHh-cCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHH
Q 041252 235 VSLLVDML-NEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLV 313 (450)
Q Consensus 235 i~~Lv~lL-~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~i 313 (450)
|+.|++.| +++++.+|..++.+|..+ .....++.|+.+++++ ++.++..++.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-----------~~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-----------GDPEAIPALIELLKDE-DPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-----------THHHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-----------CCHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC---------
Confidence 57899999 778999999998888843 1235689999999875 7889999999999883
Q ss_pred HhcCCHHHHHHhcCCC-ChhHHHHHHHHHH
Q 041252 314 VSIGAVPQLVELLPSL-DPDCLQLALCILD 342 (450)
Q Consensus 314 v~~G~v~~Lv~lL~~~-~~~~~~~al~~L~ 342 (450)
+..+++.|.+++.+. +..++..|+.+|.
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 334889999999765 4556888888774
No 112
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.23 E-value=0.00036 Score=53.78 Aligned_cols=46 Identities=28% Similarity=0.471 Sum_probs=35.6
Q ss_pred eeCcCCCCCCCC-CeeC-CCCCcccHHHHHHHHhc--CCCCCCCcCCcCC
Q 041252 70 FVCPISLEPMQD-PVTL-CTGQTYERSNILKWFSL--GRYTCPTTMQELW 115 (450)
Q Consensus 70 ~~Cpi~~~~m~d-Pv~~-~~g~ty~r~~I~~~~~~--~~~~cP~~~~~l~ 115 (450)
-.||.|+..=.| |++. .|||.|-..||.+|++. +...||+||++..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 456766665555 7654 69999999999999985 3578999998754
No 113
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.22 E-value=0.00013 Score=64.18 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=38.7
Q ss_pred eeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252 70 FVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 114 (450)
|.|-||.+-++.||++.|||.||-.|-.+-+.. ...|-+|+...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence 999999999999999999999999997776665 47788888654
No 114
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.22 E-value=0.0015 Score=61.04 Aligned_cols=181 Identities=20% Similarity=0.181 Sum_probs=108.5
Q ss_pred hccchHHHHHHHHHHHHHHHHc--HHHHHHHHhh--CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCc
Q 041252 159 KKVKGQARVQALKELHQIAAAH--ASARKTMVDE--GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAK 234 (450)
Q Consensus 159 ~~~~~~~~~~Al~~L~~l~~~~--~~~r~~i~~~--G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~ 234 (450)
++.+.+.|..|+..|+.+...+ ......+.+. ..+..+...+.+. ...+...|+.++..++..-...-.-.-...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 4567889999999999999877 3333433332 3345555555543 346788888888887754322211112456
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhH-HHHHHHHHhcCCCccchhHHHHHHHHhcc-ChHHHHH
Q 041252 235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRL-LIGLMRLVKNKRHPNGILPGLSLLRSICL-LNEVRSL 312 (450)
Q Consensus 235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~-l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~~~~~~~ 312 (450)
++.|++.+.++..-+++.|..+|..+...-.. ...+ ++.+.....++ ++.++..++..|..+.. ++.....
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~------~~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSY------SPKILLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCc------HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhh
Confidence 89999999988899999999999999754321 1122 34555555555 68888888888887763 3311111
Q ss_pred HHh----cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC
Q 041252 313 VVS----IGAVPQLVELLPSLDPDCLQLALCILDALSSL 347 (450)
Q Consensus 313 iv~----~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 347 (450)
+-. ...++.+...+.+.++++++.|-.++..+...
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 111 34677888899999999999999999999765
No 115
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00023 Score=66.90 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=41.8
Q ss_pred CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 114 (450)
.+| |.|-||.+.+.+||++.|||+||..|-.+-++. ...|++|.+..
T Consensus 239 ~~P--f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t 285 (313)
T KOG1813|consen 239 LLP--FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQT 285 (313)
T ss_pred cCC--ccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccc
Confidence 555 899999999999999999999999998888886 57799998764
No 116
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.18 E-value=0.0047 Score=53.89 Aligned_cols=128 Identities=15% Similarity=0.128 Sum_probs=98.2
Q ss_pred hhhhHHHHHHHHHhcCCC-----ccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCC--ChhHHHHHHHHHHHh
Q 041252 272 SSHRLLIGLMRLVKNKRH-----PNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSL--DPDCLQLALCILDAL 344 (450)
Q Consensus 272 ~~~g~l~~Lv~lL~~~~~-----~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~--~~~~~~~al~~L~~L 344 (450)
.+.+++..|++++.++.. .+....++.++..|-.++-.-+...+.-.|...+..+... +..+...|+.+|.++
T Consensus 8 I~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~ 87 (160)
T PF11841_consen 8 ISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESI 87 (160)
T ss_pred HhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHH
Confidence 345668999999998642 2455677888888876665556666666777777777443 689999999999999
Q ss_pred cCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHH
Q 041252 345 SSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAV 399 (450)
Q Consensus 345 ~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~ 399 (450)
..++......+..+=.++.|+..|...++..+.+|++.+-+|...+++..++++.
T Consensus 88 Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 88 VLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 9887775555554678999999999999999999999999998887765444443
No 117
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.16 E-value=0.00042 Score=66.33 Aligned_cols=53 Identities=11% Similarity=0.305 Sum_probs=43.2
Q ss_pred CCCeeeCcCCCCCCCC--Ce--eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCc
Q 041252 66 IPSVFVCPISLEPMQD--PV--TLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT 120 (450)
Q Consensus 66 ~p~~~~Cpi~~~~m~d--Pv--~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~ 120 (450)
-...|.||||+..|.. +. +.+|||+|+..+|.+-- ....||.|+.+|...+++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence 4567999999999964 33 45899999999999983 356799999999887665
No 118
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.12 E-value=0.017 Score=59.78 Aligned_cols=261 Identities=19% Similarity=0.179 Sum_probs=158.8
Q ss_pred HHHHHHHHHHcHHHHHHHHhhCChHHHHhhh---------CCCCChhhHHHHHHHHHh-cCCCchhhhhccCCCchHHHH
Q 041252 170 LKELHQIAAAHASARKTMVDEGGVALISSLL---------GPFTSHAVGSEAVGVLVN-LTLDSESKTNLMQPAKVSLLV 239 (450)
Q Consensus 170 l~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL---------~~~~~~~v~~~Al~~L~~-Ls~~~~~k~~i~~~g~i~~Lv 239 (450)
|.+|+.+.. ++.+-..+....++..|...- ....+..+..+|+..|+| +-.++..|..+.+.|....++
T Consensus 2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 455665553 344555555555566655543 222366889999999999 455667888889999999999
Q ss_pred HHhcCC-----CHHHHHHHHHHHHHHh-ccCCChhhHhhhhhHHHHHHHHHhc----C----C--------CccchhHHH
Q 041252 240 DMLNEG-----SVETKINCTRLIEKLM-EEKDFRPEIVSSHRLLIGLMRLVKN----K----R--------HPNGILPGL 297 (450)
Q Consensus 240 ~lL~~~-----~~~~~~~aa~~L~~La-~~~~~~~~~~~~~g~l~~Lv~lL~~----~----~--------~~~~~~~al 297 (450)
..|+.. +.+..--..++|+-++ ...+.+..++.+.+++..++..|.. . . +......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999876 6788888888888775 3455666777777777777776542 1 0 112244788
Q ss_pred HHHHHhccChHHHHHHHhcCCHHHHHHhcCC---------CChhHHHHHHHHHHHhcCC-hhh-------HHHHh---cc
Q 041252 298 SLLRSICLLNEVRSLVVSIGAVPQLVELLPS---------LDPDCLQLALCILDALSSL-PEG-------KLALK---DC 357 (450)
Q Consensus 298 ~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~---------~~~~~~~~al~~L~~L~~~-~e~-------r~~i~---~~ 357 (450)
.+|+|+..+-.....--+.+.++.|+.++.. ........++.+|.|+-.. ... ...+. ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 8999997443222111224455555555321 1245677777777777321 111 00010 11
Q ss_pred CCChHHHHHHHhcC----C----hHHHHHHHHHHHHhcccCchhHHHHHH----------------hcChHHHHHHHHHc
Q 041252 358 ANTIPNTVRLLMRV----S----EDCTQYALSILWSICKIAPEECSSAAV----------------DAGLAAKLFLVIQS 413 (450)
Q Consensus 358 ~g~i~~Lv~lL~~~----s----~~~~e~A~~~L~~L~~~~~~~~~~~~~----------------~~G~i~~L~~ll~s 413 (450)
...+..|+++|... . ...-..-+.+|..++..+. ..++.+. ....-..|+.++.+
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~-~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR-EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH-HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 23566777776542 1 1233445566666666553 2222221 24566778999988
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 041252 414 GCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 414 ~~~~~~k~~A~~lL~~ls~~ 433 (450)
.. +.+|..++.+|..++..
T Consensus 320 ~~-~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 320 PD-PQLKDAVAELLFVLCKE 338 (446)
T ss_pred CC-chHHHHHHHHHHHHHhh
Confidence 74 89999999999887654
No 119
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00031 Score=67.75 Aligned_cols=65 Identities=22% Similarity=0.367 Sum_probs=49.4
Q ss_pred CCCcchHHHHHhhhccC-CCCeeeCcCCCCCCCCC-------------eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252 49 GERLDLKKMIAELDLAE-IPSVFVCPISLEPMQDP-------------VTLCTGQTYERSNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 49 ~~~~~~~~~~~~~~~~~-~p~~~~Cpi~~~~m~dP-------------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 114 (450)
+.-.||.++.+.....+ -.++-+|-||.+-|-+| =-++|||-+--+|+..|+++ ..+||.|+.++
T Consensus 266 r~~kdl~~~~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 266 RATKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred HHhhHHHhhcchhhhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 34456776655433323 34678999999885543 57899999999999999998 79999999884
No 120
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.06 E-value=0.083 Score=54.67 Aligned_cols=229 Identities=17% Similarity=0.152 Sum_probs=149.1
Q ss_pred cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCC----CChhhHHHHHHHHHhcCC-CchhhhhccC-CCc
Q 041252 161 VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPF----TSHAVGSEAVGVLVNLTL-DSESKTNLMQ-PAK 234 (450)
Q Consensus 161 ~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~----~~~~v~~~Al~~L~~Ls~-~~~~k~~i~~-~g~ 234 (450)
.+..+...|+++|.|+...++..|..+++.|+.+.++..|+.. .+.++.-....+|..++. ..+.+..+++ .++
T Consensus 44 ~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~ 123 (446)
T PF10165_consen 44 PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHG 123 (446)
T ss_pred CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Confidence 3567889999999999999999999999999999999999764 246777778888877654 4466666665 578
Q ss_pred hHHHHHHhcC-----------------CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcC--------CC
Q 041252 235 VSLLVDMLNE-----------------GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNK--------RH 289 (450)
Q Consensus 235 i~~Lv~lL~~-----------------~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~--------~~ 289 (450)
+..++..|.. .+.+....+.++++|+......... -.....++.|+.++..- ..
T Consensus 124 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 124 VELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred HHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 8888877631 1233455667778888543322211 01233445555544321 11
Q ss_pred ccchhHHHHHHHHhccChHHHHH--------------HHhcCCHHHHHHhcCC----C----ChhHHHHHHHHHHHhcCC
Q 041252 290 PNGILPGLSLLRSICLLNEVRSL--------------VVSIGAVPQLVELLPS----L----DPDCLQLALCILDALSSL 347 (450)
Q Consensus 290 ~~~~~~al~aL~~Ls~~~~~~~~--------------iv~~G~v~~Lv~lL~~----~----~~~~~~~al~~L~~L~~~ 347 (450)
......+..+|.|+-.. .... -....++..|+.+|.. . -.+.....+.+|..++..
T Consensus 203 ~~~~~~~in~L~nlpl~--~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~ 280 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLE--CLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARA 280 (446)
T ss_pred hhhHHHHHHHHhCCChH--HHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHh
Confidence 22345667777777311 1111 1123356677777732 1 125667778888888866
Q ss_pred -hhhHHHHhc---------------cCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCch
Q 041252 348 -PEGKLALKD---------------CANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPE 392 (450)
Q Consensus 348 -~e~r~~i~~---------------~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 392 (450)
...|+.+.. ....-..|++++.+..+.++..+...|+.||..+.+
T Consensus 281 ~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 281 AREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred cHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHH
Confidence 555555543 123566789999888899999999999999987653
No 121
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00026 Score=75.02 Aligned_cols=46 Identities=35% Similarity=0.612 Sum_probs=41.4
Q ss_pred CeeeCcCCCCCCCC-----CeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252 68 SVFVCPISLEPMQD-----PVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 68 ~~~~Cpi~~~~m~d-----Pv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 114 (450)
.+-.|+||.|.|.. |-.++|||.|...|+.+|+++ ..+||.|+..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 35689999999999 778999999999999999998 78999999743
No 122
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.02 E-value=0.001 Score=43.89 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=35.9
Q ss_pred chhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 041252 223 SESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLM 261 (450)
Q Consensus 223 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La 261 (450)
++++..+.+.|+++.|+.+|.+++.+++..++++|++|+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 357888899999999999999999999999999999986
No 123
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.98 E-value=0.022 Score=58.04 Aligned_cols=151 Identities=17% Similarity=0.079 Sum_probs=107.5
Q ss_pred ChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh
Q 041252 192 GVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV 271 (450)
Q Consensus 192 ~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~ 271 (450)
+++.++..|....+.++...++.++. ..++ ..++..|+..|...+..++..++.+|..+
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i----------- 113 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL--AQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWL----------- 113 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh--ccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC-----------
Confidence 47888888854334555554444432 2211 22489999999988999999998888754
Q ss_pred hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhH
Q 041252 272 SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGK 351 (450)
Q Consensus 272 ~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r 351 (450)
......+.|+.+|+++ ++.++..++.++.. ......+.|..+|.+.++.++..|+.+|..+..
T Consensus 114 ~~~~a~~~L~~~L~~~-~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----- 176 (410)
T TIGR02270 114 GGRQAEPWLEPLLAAS-EPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR----- 176 (410)
T ss_pred CchHHHHHHHHHhcCC-ChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----
Confidence 2233457788888776 68788777766655 112345789999999999999999999988753
Q ss_pred HHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 041252 352 LALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI 386 (450)
Q Consensus 352 ~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L 386 (450)
..+++.|...+.+.++.++..|+..|..+
T Consensus 177 ------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 177 ------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred ------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 45666777777777888888888777554
No 124
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00047 Score=67.34 Aligned_cols=46 Identities=22% Similarity=0.459 Sum_probs=39.8
Q ss_pred eeCcCCCCCCCC--Ce-eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 70 FVCPISLEPMQD--PV-TLCTGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 70 ~~Cpi~~~~m~d--Pv-~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
++|-||+|-+.+ -+ +++|+|.|=..||..|+.+...+||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 699999999984 44 68999999999999999986567999998653
No 125
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.00079 Score=61.50 Aligned_cols=54 Identities=15% Similarity=0.316 Sum_probs=46.9
Q ss_pred CCeeeCcCCCCCCCCCe----eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcc
Q 041252 67 PSVFVCPISLEPMQDPV----TLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTP 121 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~ 121 (450)
...|+||+|.+.+.+.+ +-+|||.|+..|.++.+.. ...||+|+.++.+.++++
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence 35799999999999854 3479999999999999885 788999999999988876
No 126
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.26 Score=52.30 Aligned_cols=192 Identities=12% Similarity=0.090 Sum_probs=109.8
Q ss_pred hhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh
Q 041252 147 VQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK 226 (450)
Q Consensus 147 ~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k 226 (450)
..+.++.|+..|..+++.++..|+..+..|+..+|.|--.+ -|.+..+|..+.+.-+.-..+.+..+|+--+.--
T Consensus 179 lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL 253 (877)
T KOG1059|consen 179 LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL 253 (877)
T ss_pred HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchh
Confidence 34556666666666666666666666666666666553332 2555666655444455555555555555433210
Q ss_pred hhccCCCchHHHHHHhcCCC-HHHHHHHHHHHH--HHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHh
Q 041252 227 TNLMQPAKVSLLVDMLNEGS-VETKINCTRLIE--KLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSI 303 (450)
Q Consensus 227 ~~i~~~g~i~~Lv~lL~~~~-~~~~~~aa~~L~--~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~L 303 (450)
....+++|..++.+.+ ..+.-.+..++- +++++...... ...-++..|-.++.+. +++.+--++-|++.+
T Consensus 254 ----gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~a--siqLCvqKLr~fieds-DqNLKYlgLlam~KI 326 (877)
T KOG1059|consen 254 ----GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSA--SIQLCVQKLRIFIEDS-DQNLKYLGLLAMSKI 326 (877)
T ss_pred ----hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHH--HHHHHHHHHhhhhhcC-CccHHHHHHHHHHHH
Confidence 1123677777776542 223333333322 22222111111 1122455555556664 788888888898888
Q ss_pred c-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhc
Q 041252 304 C-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKD 356 (450)
Q Consensus 304 s-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~ 356 (450)
. .|+.....- -+.++.+|.+.|+.++-.|+..|.-+.+ .+|-.+|+.
T Consensus 327 ~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eIVk 374 (877)
T KOG1059|consen 327 LKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEIVK 374 (877)
T ss_pred hhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHHHH
Confidence 8 455432221 2467889999999999999999999876 344444443
No 127
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.83 E-value=0.0063 Score=49.09 Aligned_cols=64 Identities=20% Similarity=0.327 Sum_probs=55.4
Q ss_pred hhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhc--CCCChhHHHHHHHHHHHhcCC-hhhHHHHhc
Q 041252 293 ILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELL--PSLDPDCLQLALCILDALSSL-PEGKLALKD 356 (450)
Q Consensus 293 ~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL--~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~ 356 (450)
+...+++|.||| .+..++..+.+.|++|.++... ++.+|-++|.|+.++++|+.. ++|+..+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 556788999999 6788999999999999999986 556899999999999999965 888888865
No 128
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.83 E-value=0.00054 Score=68.91 Aligned_cols=50 Identities=20% Similarity=0.318 Sum_probs=43.2
Q ss_pred CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc----CCCCCCCcCCcCCCC
Q 041252 68 SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL----GRYTCPTTMQELWDD 117 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~----~~~~cP~~~~~l~~~ 117 (450)
++..|-+|.++-.||+...|.|+|||-||.++... ++.+||.|...|+-+
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 35789999999999999999999999999998752 357899998887654
No 129
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00094 Score=62.15 Aligned_cols=48 Identities=25% Similarity=0.297 Sum_probs=40.1
Q ss_pred CeeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHh-cCCCCCCCcCCcCC
Q 041252 68 SVFVCPISLEPMQDPVTLC-TGQTYERSNILKWFS-LGRYTCPTTMQELW 115 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~-~~~~~cP~~~~~l~ 115 (450)
+.-.||+|++.-.-|.+.. |||.||.-||..-+. ....+||.|+.+..
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3578999999999999865 999999999999755 23689999987653
No 130
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.00098 Score=60.89 Aligned_cols=43 Identities=28% Similarity=0.539 Sum_probs=37.0
Q ss_pred hhhccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc
Q 041252 60 ELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL 102 (450)
Q Consensus 60 ~~~~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~ 102 (450)
+|-...+-+.-+|.+|.+.++|||+.++||.|||.||.+++-.
T Consensus 34 RLgrDsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 34 RLGRDSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred hhcccccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 4445566666789999999999999999999999999999764
No 131
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=96.76 E-value=0.0015 Score=60.53 Aligned_cols=53 Identities=25% Similarity=0.334 Sum_probs=42.4
Q ss_pred hhccCCCCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcC-CCCCCCcCCc
Q 041252 61 LDLAEIPSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLG-RYTCPTTMQE 113 (450)
Q Consensus 61 ~~~~~~p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~-~~~cP~~~~~ 113 (450)
++..+.--.++|||+.....+|++- .|||.|+|..|...+... ...||+-+..
T Consensus 168 ~~i~~e~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 168 ELIGQEVFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred HHhhhhhhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 3444555578999999999999975 599999999999998742 3459998765
No 132
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.64 E-value=0.38 Score=47.65 Aligned_cols=189 Identities=26% Similarity=0.280 Sum_probs=124.7
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
..+..++..+.+.+..+|..|...+..+... -+++.+..+|... +..++..|+.+|..+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~-~~~vr~~a~~aLg~~--------- 101 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDE-DPRVRDAAADALGEL--------- 101 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCC-CHHHHHHHHHHHHcc---------
Confidence 3567788888887777888888775544321 2478899999876 678888888866543
Q ss_pred ccCCCchHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252 229 LMQPAKVSLLVDMLN-EGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN 307 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~-~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~ 307 (450)
..+.+++.++..|. +.+..+|..|+.+|..+-.. ..+.+|+..+.+..+ .. ++..+ .....
T Consensus 102 -~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~-~~---a~~~~--~~~~~ 163 (335)
T COG1413 102 -GDPEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDS-GS---AAAAL--DAALL 163 (335)
T ss_pred -CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchh-hh---hhhhc--cchHH
Confidence 34667999999999 58999999999999988322 125778887776531 11 11111 00000
Q ss_pred HHHHHH-------HhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHH
Q 041252 308 EVRSLV-------VSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYAL 380 (450)
Q Consensus 308 ~~~~~i-------v~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~ 380 (450)
..|... .+.-.++.+.+++.+.+..++..|..+|..+.... ..+.+.++..+...+..++..++
T Consensus 164 ~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 164 DVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred HHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHH
Confidence 122222 22347788999998888899999999999887654 13445566666666666665555
Q ss_pred HHHHH
Q 041252 381 SILWS 385 (450)
Q Consensus 381 ~~L~~ 385 (450)
.+|..
T Consensus 235 ~~l~~ 239 (335)
T COG1413 235 LALGE 239 (335)
T ss_pred HHhcc
Confidence 55443
No 133
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.34 Score=47.01 Aligned_cols=244 Identities=15% Similarity=0.147 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhc
Q 041252 164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLN 243 (450)
Q Consensus 164 ~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~ 243 (450)
-+|...+.-+-.+.+-++..-...-..|.+..|..=|+...|.-++.+.+.....|...+..++.+.+.|.|..+..++.
T Consensus 186 iaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIs 265 (524)
T KOG4413|consen 186 IARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIIS 265 (524)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhh
Confidence 35666677777777777777777888899999888777644677888899999999998899999999999999999986
Q ss_pred CC--CHHHHHHHHH----HHHHHhccCCChhhHhhh-hhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhc
Q 041252 244 EG--SVETKINCTR----LIEKLMEEKDFRPEIVSS-HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSI 316 (450)
Q Consensus 244 ~~--~~~~~~~aa~----~L~~La~~~~~~~~~~~~-~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~ 316 (450)
.. ++-.+-.+.- .+.+++-.+-....+... ..++...+.++... ++..+..|..++..|.++.+.+..+..-
T Consensus 266 GadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnteGadlllkT 344 (524)
T KOG4413|consen 266 GADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNTEGADLLLKT 344 (524)
T ss_pred CCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCcchhHHHhcc
Confidence 33 3433333322 222222211111112111 23566667777765 7899999999999999998888777776
Q ss_pred CC--HHHHHHhc-CCCChhHHHHHHHHHHHhcCC----hh----h------HHHHhccC------CChHHHHHHHhcCCh
Q 041252 317 GA--VPQLVELL-PSLDPDCLQLALCILDALSSL----PE----G------KLALKDCA------NTIPNTVRLLMRVSE 373 (450)
Q Consensus 317 G~--v~~Lv~lL-~~~~~~~~~~al~~L~~L~~~----~e----~------r~~i~~~~------g~i~~Lv~lL~~~s~ 373 (450)
|- ...++.-. ......-++.++.+|.++++. ++ + |..+.+.+ .-...+..+++..++
T Consensus 345 gppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfp 424 (524)
T KOG4413|consen 345 GPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFP 424 (524)
T ss_pred CChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCCh
Confidence 63 33333333 333345677788888888863 11 1 12222200 123445556666678
Q ss_pred HHHHHHHHHHHHhcccCchhHHHHHH-hcChHHHHHHH
Q 041252 374 DCTQYALSILWSICKIAPEECSSAAV-DAGLAAKLFLV 410 (450)
Q Consensus 374 ~~~e~A~~~L~~L~~~~~~~~~~~~~-~~G~i~~L~~l 410 (450)
+..-.|..++.+++.... +..++. ..|.+..+.+-
T Consensus 425 EihcAalktfTAiaaqPW--alkeifakeefieiVtDa 460 (524)
T KOG4413|consen 425 EIHCAALKTFTAIAAQPW--ALKEIFAKEEFIEIVTDA 460 (524)
T ss_pred hhHHHHHHHHHHHHcCcH--HHHHHhcCccceeeeccc
Confidence 888999999999987654 344555 45666555543
No 134
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0014 Score=64.27 Aligned_cols=44 Identities=30% Similarity=0.641 Sum_probs=39.3
Q ss_pred CeeeCcCCCCCCCC---CeeCCCCCcccHHHHHHHHhcCC--CCCCCcC
Q 041252 68 SVFVCPISLEPMQD---PVTLCTGQTYERSNILKWFSLGR--YTCPTTM 111 (450)
Q Consensus 68 ~~~~Cpi~~~~m~d---Pv~~~~g~ty~r~~I~~~~~~~~--~~cP~~~ 111 (450)
+-|+|||.++--.| |+.+.|||.-++.+|.+-...|. +.||.|-
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 35899999998876 99999999999999999999876 7899994
No 135
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.0087 Score=62.38 Aligned_cols=253 Identities=17% Similarity=0.122 Sum_probs=150.5
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC------Cch
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL------DSE 224 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~------~~~ 224 (450)
+..+.....+.+..+|..|++.|..+.....-.+. .....+..++.. +..++..|+.++.-... ..+
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~-~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDD-YEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcch-HHHHHHHHHHHHHHHHhcCCCcccch
Confidence 33456666667777888888888877653221111 135566777764 67899888777765432 111
Q ss_pred hhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHh-
Q 041252 225 SKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSI- 303 (450)
Q Consensus 225 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~L- 303 (450)
+-+.=..-.+...+...+...+..+|..|+.+|..+-...+ +++ ..-+=..+++-++.+. ...+.......+-
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe---e~i-~QTLdKKlms~lRRkr--~ahkrpk~l~s~Ge 346 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE---EII-QQTLDKKLMSRLRRKR--TAHKRPKALYSSGE 346 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH---HHH-HHHHHHHHhhhhhhhh--hcccchHHHHhcCC
Confidence 11111123567888888988899999999999887732221 121 1111233443222210 0111111122222
Q ss_pred ---------c----cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhc
Q 041252 304 ---------C----LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMR 370 (450)
Q Consensus 304 ---------s----~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~ 370 (450)
. ..++.-..++..|+-.++|.=|.+.-.+++++|+..+..|+.+. ..+.. .++.-||..+..
T Consensus 347 wSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss---P~FA~--~aldfLvDMfND 421 (823)
T KOG2259|consen 347 WSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS---PGFAV--RALDFLVDMFND 421 (823)
T ss_pred cccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC---CCcHH--HHHHHHHHHhcc
Confidence 0 11223456788899999999998877899999999999998642 12222 356688888887
Q ss_pred CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041252 371 VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKL 429 (450)
Q Consensus 371 ~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ 429 (450)
..+.++..|+.+|..++.+- .++..-++.++.-|... ++.+|++...+|+.
T Consensus 422 E~~~VRL~ai~aL~~Is~~l-------~i~eeql~~il~~L~D~-s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 422 EIEVVRLKAIFALTMISVHL-------AIREEQLRQILESLEDR-SVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------eecHHHHHHHHHHHHhc-CHHHHHHHHHHHHh
Confidence 77899999999999887753 12222334444444443 45555555555544
No 136
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.011 Score=60.36 Aligned_cols=186 Identities=11% Similarity=0.070 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhhhhccCCCchHHHHHHhcCC
Q 041252 167 VQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESKTNLMQPAKVSLLVDMLNEG 245 (450)
Q Consensus 167 ~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~ 245 (450)
..++..|..+++.=...|.-+.....+++|+.+|+.. +..+...+...++|+...- .-+..+.+.|.|..|+.++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P-eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP-EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc-cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 4456667777765556788888888999999999764 4556667788888866543 4466788899999999999988
Q ss_pred CHHHHHHHHHHHHHHhccCCCh--hhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh-HH---HHHHHhc---
Q 041252 246 SVETKINCTRLIEKLMEEKDFR--PEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN-EV---RSLVVSI--- 316 (450)
Q Consensus 246 ~~~~~~~aa~~L~~La~~~~~~--~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~-~~---~~~iv~~--- 316 (450)
+...|.+..|.|+.|.-+.+.. -+.+...| +..++.+.+++ ...+++..+..|+|+..+. .| +.-...+
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig-~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~ 563 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIG-VEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR 563 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcC-HHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence 9999999999999997443322 12233334 67888888776 5789999999999997422 11 1111111
Q ss_pred C-CHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHh
Q 041252 317 G-AVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALK 355 (450)
Q Consensus 317 G-~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~ 355 (450)
. ....|++.+++.++-..+..+.+|-+++.++++...++
T Consensus 564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V 603 (743)
T COG5369 564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIV 603 (743)
T ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHH
Confidence 1 23456777777777777777888888887766655444
No 137
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.0019 Score=59.28 Aligned_cols=50 Identities=18% Similarity=0.376 Sum_probs=42.1
Q ss_pred CeeeCcCCCCCCCCCe----eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCc
Q 041252 68 SVFVCPISLEPMQDPV----TLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT 120 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~ 120 (450)
..|+|||++-.|.+-. +-+|||.|.-+++.+. +...|++|+..+..++.+
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei---kas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI---KASVCHVCGAAYQEDDVI 163 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh---hhccccccCCcccccCeE
Confidence 4699999999999865 4589999999998887 357899999999876654
No 138
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0017 Score=61.18 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=38.1
Q ss_pred eeCcCCCCCCC--CCe-eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 70 FVCPISLEPMQ--DPV-TLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 70 ~~Cpi~~~~m~--dPv-~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
.-|-||..-+. |-+ ++||.|.|-+.||++|+..-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 46999986554 444 689999999999999998656779999987754
No 139
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.48 E-value=0.94 Score=48.48 Aligned_cols=233 Identities=17% Similarity=0.133 Sum_probs=133.6
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHH--HHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhhh
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHAS--ARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESKT 227 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~--~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k~ 227 (450)
+..++..|++.+..+|.+|+..+..++.--.. --+.+...|.| |-.-|... ..++.-..+++|..+...- -.|.
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgee-ypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEE-YPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcc-cHHHHHHHHHHHHHHHHhcccccc
Confidence 34556667888889999999998887753111 11344555643 55677654 6677666555555433211 1111
Q ss_pred hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc---
Q 041252 228 NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC--- 304 (450)
Q Consensus 228 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls--- 304 (450)
.=--.+.+|.|.-+|++....+++++..++..++.......-.-.=-.+.-.|+.+|+.- ..+.+.+|...+..++
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah-kK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH-KKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHhc
Confidence 111257899999999999999999999999999854432111100012345666777653 2445555555444443
Q ss_pred cChH---------------HH------HHHH-h-cC---CHHHHHHhcCCCChhHHHHHHHHHHHhcCC--hhhHHHHhc
Q 041252 305 LLNE---------------VR------SLVV-S-IG---AVPQLVELLPSLDPDCLQLALCILDALSSL--PEGKLALKD 356 (450)
Q Consensus 305 ~~~~---------------~~------~~iv-~-~G---~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e~r~~i~~ 356 (450)
+..+ || ..+| + .| ++|+|+.--+..+..++.-.+++|..+-.. ..++.-+..
T Consensus 957 GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiya 1036 (1172)
T KOG0213|consen 957 GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYA 1036 (1172)
T ss_pred CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHH
Confidence 1111 11 1233 2 23 344444444555677888888888877654 334444432
Q ss_pred cCCChHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 041252 357 CANTIPNTVRLLMRVSEDCTQYALSILWSICKIA 390 (450)
Q Consensus 357 ~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 390 (450)
..|.|-..|...+..-++.|+.++..++...
T Consensus 1037 ---v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1037 ---VTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred ---hhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 4566666666655566666666666665443
No 140
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.39 E-value=0.08 Score=46.28 Aligned_cols=128 Identities=17% Similarity=0.207 Sum_probs=98.5
Q ss_pred hccCCCchHHHHHHhcCCC------HHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCC-CccchhHHHHHH
Q 041252 228 NLMQPAKVSLLVDMLNEGS------VETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKR-HPNGILPGLSLL 300 (450)
Q Consensus 228 ~i~~~g~i~~Lv~lL~~~~------~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~-~~~~~~~al~aL 300 (450)
.+++.+|+..|++++.++. .+....+..++.+|.+.+....+ ..+..++...+..++... +.++...++..|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 4667899999999998875 36667778888888776544444 345678889999888643 577888999999
Q ss_pred HHhccChHHHHHHHh-cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-h-hhHHHHhc
Q 041252 301 RSICLLNEVRSLVVS-IGAVPQLVELLPSLDPDCLQLALCILDALSSL-P-EGKLALKD 356 (450)
Q Consensus 301 ~~Ls~~~~~~~~iv~-~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~-e~r~~i~~ 356 (450)
-++..+.......|+ .=-++.|+..|...+.+++.+|+..+-.|-.. + ..|+.+.+
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~ 143 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAE 143 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 999987777666665 45688899999999999999999999888643 3 44445543
No 141
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.39 E-value=0.26 Score=48.84 Aligned_cols=155 Identities=21% Similarity=0.156 Sum_probs=107.3
Q ss_pred ChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh
Q 041252 192 GVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV 271 (450)
Q Consensus 192 ~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~ 271 (450)
.++.+...+.+. +..++..|...+..+ ....+++.+..+|.+.+..+|..|+.+|..+-
T Consensus 44 ~~~~~~~~l~~~-~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------- 102 (335)
T COG1413 44 AADELLKLLEDE-DLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADALGELG---------- 102 (335)
T ss_pred hHHHHHHHHcCC-CHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------
Confidence 577788888775 667777777774432 23567999999999999999999999776651
Q ss_pred hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhH------------HHHHHH
Q 041252 272 SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDC------------LQLALC 339 (450)
Q Consensus 272 ~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~------------~~~al~ 339 (450)
....++.|+.++....+..++..++.+|..+-... ++..++..+.+..... +..+..
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 12246888888885336778888888888775322 2677888887654322 222222
Q ss_pred HHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 041252 340 ILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKI 389 (450)
Q Consensus 340 ~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 389 (450)
+|.. +.+ ...++.+...+......++..|..+|..+...
T Consensus 172 ~l~~----------~~~-~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 172 ALGE----------LGD-PEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHH----------cCC-hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 2222 222 56788888888888888888888888877665
No 142
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.18 Score=53.08 Aligned_cols=271 Identities=14% Similarity=0.117 Sum_probs=157.4
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhC-ChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEG-GVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G-~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
-+++++...++.++..|..|+.++-...-... ...+..-. .++.+..+-.. .+++++.+.+.++..|-..... .
T Consensus 175 mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalanD-~~~eVRk~vC~alv~Llevr~d--k 249 (885)
T KOG2023|consen 175 MIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALAND-EDPEVRKNVCRALVFLLEVRPD--K 249 (885)
T ss_pred hHHHHHHHHhCCChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHhcHH--h
Confidence 47788888899889999999998876553221 12222111 13344444333 4789999999888876543222 2
Q ss_pred ccC--CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhh--hhHHHHHHH----------HHhcCCC-----
Q 041252 229 LMQ--PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSS--HRLLIGLMR----------LVKNKRH----- 289 (450)
Q Consensus 229 i~~--~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~--~g~l~~Lv~----------lL~~~~~----- 289 (450)
++- .+.++.++..-...+.++...|+.....+++.. ..+.+... ..++|.|++ +|++..+
T Consensus 250 l~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vp 328 (885)
T KOG2023|consen 250 LVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVP 328 (885)
T ss_pred cccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCC
Confidence 322 567777777777778889999999999998776 44444432 235555554 2331000
Q ss_pred ----------------------------------------ccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCC
Q 041252 290 ----------------------------------------PNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSL 329 (450)
Q Consensus 290 ----------------------------------------~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~ 329 (450)
.+.++-++.+|--|+.- .+..+.. -.+|.|-+.|.+.
T Consensus 329 DreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~-~l~PlLk~~L~~~ 405 (885)
T KOG2023|consen 329 DREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLP-ILLPLLKEHLSSE 405 (885)
T ss_pred chhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHh--hHHHHHH-HHHHHHHHHcCcc
Confidence 22333333334333311 1111111 1344555555665
Q ss_pred ChhHHHHHHHHHHHhcCChhhHHH-Hhcc-CCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHH
Q 041252 330 DPDCLQLALCILDALSSLPEGKLA-LKDC-ANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKL 407 (450)
Q Consensus 330 ~~~~~~~al~~L~~L~~~~e~r~~-i~~~-~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L 407 (450)
+=.++|.++-+|..++. |+.. ++.+ ...||.|+++|....+-++.-.++.|...+..--.+-...-.. -+...|
T Consensus 406 ~W~vrEagvLAlGAIAE---GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~~l 481 (885)
T KOG2023|consen 406 EWKVREAGVLALGAIAE---GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLEGL 481 (885)
T ss_pred hhhhhhhhHHHHHHHHH---HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHHHH
Confidence 66789999988888874 3332 3331 1268889999999888888888888766554321111111111 122223
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhc
Q 041252 408 FLVIQSGCNPVLKQRSAELLKLCSLNY 434 (450)
Q Consensus 408 ~~ll~s~~~~~~k~~A~~lL~~ls~~~ 434 (450)
+..+-.+ +..++++|......+-.+.
T Consensus 482 l~~llD~-NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 482 LRRLLDS-NKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHHHhc
Confidence 3333333 6788999988888776664
No 143
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.29 E-value=0.0052 Score=43.61 Aligned_cols=54 Identities=17% Similarity=-0.029 Sum_probs=45.0
Q ss_pred cchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHh
Q 041252 291 NGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDAL 344 (450)
Q Consensus 291 ~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L 344 (450)
.++..|+.+|.+++........-....+++.|+.+|.+.++.++..|+++|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 467889999999986665555556678899999999998899999999999875
No 144
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.22 Score=53.12 Aligned_cols=260 Identities=14% Similarity=0.110 Sum_probs=165.2
Q ss_pred cchHHHHHHHHHHHHHHHH------cHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcC-CCchhhhhccCCC
Q 041252 161 VKGQARVQALKELHQIAAA------HASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLT-LDSESKTNLMQPA 233 (450)
Q Consensus 161 ~~~~~~~~Al~~L~~l~~~------~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls-~~~~~k~~i~~~g 233 (450)
++..+|..|+++|.+--.. ++..|..+ ....++.-.+. +.+++..|...|..+. ..-+....-++..
T Consensus 186 ~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~i-----MqvvcEatq~~-d~~i~~aa~~ClvkIm~LyY~~m~~yM~~a 259 (859)
T KOG1241|consen 186 TSAAVRLAALNALYNSLEFTKANFNNEMERNYI-----MQVVCEATQSP-DEEIQVAAFQCLVKIMSLYYEFMEPYMEQA 259 (859)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhccHhhhcee-----eeeeeecccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888899998764321 11222222 23444554444 7889999998888743 3444444444555
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHhccC-C---------------ChhhHh--hhhhHHHHHHHHHhc------CCC
Q 041252 234 KVSLLVDMLNEGSVETKINCTRLIEKLMEEK-D---------------FRPEIV--SSHRLLIGLMRLVKN------KRH 289 (450)
Q Consensus 234 ~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~-~---------------~~~~~~--~~~g~l~~Lv~lL~~------~~~ 289 (450)
....-+.-+++.+.++...+...=.+++... | ...... .-.+++|.|+++|.. +.+
T Consensus 260 lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~Dd 339 (859)
T KOG1241|consen 260 LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDD 339 (859)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCccccc
Confidence 5666677788889999888887766665221 1 011111 113678888888864 113
Q ss_pred ccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh--hHHHHhccCCChHHHHHH
Q 041252 290 PNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPE--GKLALKDCANTIPNTVRL 367 (450)
Q Consensus 290 ~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e--~r~~i~~~~g~i~~Lv~l 367 (450)
.+.-++|..+|.-++..-.+ .|+. -++|.+=+-+++++-.-++.|+.++..+-..++ -...++ .+++|.++.+
T Consensus 340 Wnp~kAAg~CL~l~A~~~~D--~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp~ii~l 414 (859)
T KOG1241|consen 340 WNPAKAAGVCLMLFAQCVGD--DIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV--IQALPSIINL 414 (859)
T ss_pred CcHHHHHHHHHHHHHHHhcc--cchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhHHHHHH
Confidence 44556666666655432111 2222 234444445677788888999998888876643 334455 4899999999
Q ss_pred HhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 368 LMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 368 L~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
+...+--+++.+.+.|..++...++.+-......+.++.++.-|... |++-.++.+.+-.|...
T Consensus 415 m~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De--Prva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 415 MSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE--PRVASNVCWAFISLAEA 478 (859)
T ss_pred hcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC--chHHHHHHHHHHHHHHH
Confidence 99878888899999999999888755444455567777777766553 67777777777777655
No 145
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.12 Score=53.35 Aligned_cols=230 Identities=12% Similarity=0.130 Sum_probs=135.6
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHh-hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVD-EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL 229 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i 229 (450)
.+-|+.+|+..+.++|..+=..|..+-.+- .++....+ ...++.++.=+.++ .+.++..|+..+..+..-...--..
T Consensus 210 ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI-~s~P~s~d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l~ 287 (675)
T KOG0212|consen 210 LDGLFNMLSDSSDEVRTLTDTLLSEFLAEI-RSSPSSMDYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDLLL 287 (675)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-hcCccccCcccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcchhh
Confidence 455777888887777754433333322210 01111112 23467777777765 6789999999988865433332333
Q ss_pred cCCCchHHHHHHhcCCCH-HHHHHHHH---HHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252 230 MQPAKVSLLVDMLNEGSV-ETKINCTR---LIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL 305 (450)
Q Consensus 230 ~~~g~i~~Lv~lL~~~~~-~~~~~aa~---~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~ 305 (450)
.-+|.+..++..+.+... ..++.+.. .|..+.+......+ +.-..++..|.+.+.++ ..+++..++.-+.-|-.
T Consensus 288 ~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~ 365 (675)
T KOG0212|consen 288 YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYH 365 (675)
T ss_pred hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHh
Confidence 346667777777765433 34444332 34444333222222 22234677777777775 46677777777766665
Q ss_pred ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHH
Q 041252 306 LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWS 385 (450)
Q Consensus 306 ~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~ 385 (450)
...++.........+.|+.-|++.+.++...++..|+++|..++...-+ ..+..|.++......-....+.-++..
T Consensus 366 ~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~----~fl~sLL~~f~e~~~~l~~Rg~lIIRq 441 (675)
T KOG0212|consen 366 KAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLR----KFLLSLLEMFKEDTKLLEVRGNLIIRQ 441 (675)
T ss_pred hCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHH----HHHHHHHHHHhhhhHHHHhhhhHHHHH
Confidence 5556555556788999999999999999999999999999876543211 122334444443333444555555555
Q ss_pred hcc
Q 041252 386 ICK 388 (450)
Q Consensus 386 L~~ 388 (450)
+|.
T Consensus 442 lC~ 444 (675)
T KOG0212|consen 442 LCL 444 (675)
T ss_pred HHH
Confidence 554
No 146
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.078 Score=58.23 Aligned_cols=138 Identities=16% Similarity=0.129 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHhccCCChhhHhhhh----hHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHH
Q 041252 249 TKINCTRLIEKLMEEKDFRPEIVSSH----RLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVE 324 (450)
Q Consensus 249 ~~~~aa~~L~~La~~~~~~~~~~~~~----g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~ 324 (450)
-.+.+..+|.||...+.....++++. |.++-+...+....++.++.-++..+..+..+.+.-..+++.|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 34567788999977776555555443 55666677777777888999999999999999998999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhc-CChHHHHHHHHHHHHhcc
Q 041252 325 LLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMR-VSEDCTQYALSILWSICK 388 (450)
Q Consensus 325 lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~ 388 (450)
+|.+ -+..++.++.+|..|+++++.-.+..+ .||+..+..++-. .++..+..|+..|..+..
T Consensus 1821 lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 9975 567999999999999999876666666 4888888777744 456777778888877654
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.19 E-value=0.0021 Score=63.85 Aligned_cols=47 Identities=23% Similarity=0.588 Sum_probs=37.8
Q ss_pred CCCCeeeCcCCCCCCCCCe----eCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252 65 EIPSVFVCPISLEPMQDPV----TLCTGQTYERSNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 114 (450)
.+-+..+||+|.+-|.+-+ ++.|.|+|--+|+.+|+. .+||+||.-.
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q 221 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQ 221 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhc
Confidence 3345679999999999876 457999999999999954 5689987543
No 148
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.003 Score=60.30 Aligned_cols=49 Identities=27% Similarity=0.403 Sum_probs=42.0
Q ss_pred CCCCeeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252 65 EIPSVFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l 114 (450)
-.|..-.||+|..--.+|.++. +|+.||..||-.+..+ +..||+|+.+.
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~ 345 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPA 345 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcc
Confidence 4456678999999989888775 6999999999999995 88999998765
No 149
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.15 E-value=0.64 Score=48.70 Aligned_cols=231 Identities=13% Similarity=0.099 Sum_probs=131.3
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcH--HHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchh-hh
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHA--SARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES-KT 227 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~--~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~-k~ 227 (450)
+..++..|++..+++|.+|+.....++.--. .--+.+...|.| |-+-|... ..++.-..++++..+-..-.- +-
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~-ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGED-YPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcc-cHHHHHHHHHHHHHHhhhhccccc
Confidence 5667788899999999999988877764211 012344555533 45556543 667777666776654332111 11
Q ss_pred hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh---hhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252 228 NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR---PEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC 304 (450)
Q Consensus 228 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~---~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls 304 (450)
.---.|.+|.|.-+|++....+..+...++..++...... ++.+ .+.-.|+.+|++- +.+.+.+|...+.-++
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~-nKeiRR~A~~tfG~Is 758 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSW-NKEIRRNATETFGCIS 758 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHh-hHHHHHhhhhhhhhHH
Confidence 1112688999999999999999999998888887544321 2221 2345667777663 4555555555444333
Q ss_pred ---cChH---------------HH------HHHH-h-cCC---HHHHHHhcCCCChhHHHHHHHHHHHhcCC--hhhHHH
Q 041252 305 ---LLNE---------------VR------SLVV-S-IGA---VPQLVELLPSLDPDCLQLALCILDALSSL--PEGKLA 353 (450)
Q Consensus 305 ---~~~~---------------~~------~~iv-~-~G~---v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e~r~~ 353 (450)
+..+ +| ..+| + .|- +|.|+.--..++..++.-.+++++.+-.. ...+.-
T Consensus 759 ~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dY 838 (975)
T COG5181 759 RAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDY 838 (975)
T ss_pred hhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1111 11 1222 2 233 33333333445667888777777776643 222333
Q ss_pred HhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCc
Q 041252 354 LKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAP 391 (450)
Q Consensus 354 i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 391 (450)
+. -..|.|-..|...++.-++.|..++..|+.+++
T Consensus 839 vy---~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 839 VY---SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HH---HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 32 234455555555555566666666666655543
No 150
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.12 Score=53.15 Aligned_cols=184 Identities=13% Similarity=0.023 Sum_probs=130.6
Q ss_pred hhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252 225 SKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC 304 (450)
Q Consensus 225 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls 304 (450)
-|..+.+....++|+++|+.++..+.--+...+.++.-.-+.....+-..|++..|+.++.++ +...+++..|.|+.+-
T Consensus 423 LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK-DdaLqans~wvlrHlm 501 (743)
T COG5369 423 LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK-DDALQANSEWVLRHLM 501 (743)
T ss_pred HHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-hhhhhhcchhhhhhhh
Confidence 356778889999999999886666666777888888644444455567789999999999987 6778999999999998
Q ss_pred cC--hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC----hhhHHHHhccCC----ChHHHHHHHhcCChH
Q 041252 305 LL--NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL----PEGKLALKDCAN----TIPNTVRLLMRVSED 374 (450)
Q Consensus 305 ~~--~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~----~e~r~~i~~~~g----~i~~Lv~lL~~~s~~ 374 (450)
.+ +..+-+....-++..++++..+++-.+++.++.+|+|+.-+ ++.+..+.. .- ....|++.+...++-
T Consensus 502 yncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K-~~p~~ylfk~l~~k~e~~np~ 580 (743)
T COG5369 502 YNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIK-ATPRRYLFKRLIDKYEENNPM 580 (743)
T ss_pred hcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEe-cChHHHHHHHHHHHHHhcCch
Confidence 43 33466777777889999999999999999999999999642 223333322 11 233556666666776
Q ss_pred HHHHHHHHHHHhcccCchhHHHHHH-hcChHHHHHHHH
Q 041252 375 CTQYALSILWSICKIAPEECSSAAV-DAGLAAKLFLVI 411 (450)
Q Consensus 375 ~~e~A~~~L~~L~~~~~~~~~~~~~-~~G~i~~L~~ll 411 (450)
-.+..+.+|.+++..+.+ ....+. +...+..+..+|
T Consensus 581 ~i~~~~yilv~~aa~d~~-l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 581 EILEGCYILVRNAACDDT-LDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred hhhhhHHHHHHHHhccch-HHHHHHhHHHHHHHHHHHH
Confidence 667778888888887643 333333 344444444444
No 151
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=0.34 Score=51.88 Aligned_cols=269 Identities=16% Similarity=0.149 Sum_probs=149.6
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchh-hhh
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES-KTN 228 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~-k~~ 228 (450)
...++...+++.++.+|..|.-...++-. .+.+.+...|.++.|-.++... +..+..+|+.+|.++...+.+ ...
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHHHhCCCCCcc
Confidence 35678888888889999988888777753 3557788899999999999864 678999999999987664433 112
Q ss_pred ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH
Q 041252 229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE 308 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~ 308 (450)
......+..++..|+..+.-.+ +.+|..|+.....-. .....++..+...|.+. ++.++..+...+.++.....
T Consensus 198 ~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~--~ea~~i~~r~~p~Lqh~-n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDS--REAEDICERLTPRLQHA-NSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred cccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCc--hhHHHHHHHhhhhhccC-CcceEeehHHHHHHHHHHHH
Confidence 2223344444444443332222 234444543221111 12234455555556654 45667777777777764333
Q ss_pred HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-Chh-------------------------hHHHHhccCCC--
Q 041252 309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS-LPE-------------------------GKLALKDCANT-- 360 (450)
Q Consensus 309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~e-------------------------~r~~i~~~~g~-- 360 (450)
......-.-.-++|+.++++.+ +++--|+.=+..+-. .|+ .+..+...++.
T Consensus 272 ~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q 350 (734)
T KOG1061|consen 272 QVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ 350 (734)
T ss_pred HHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH
Confidence 3333444445567777776544 444333322221111 111 00111110010
Q ss_pred -hHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCC
Q 041252 361 -IPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDT 437 (450)
Q Consensus 361 -i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~ 437 (450)
+.-+.+.-...+....+.|++++..++..-+ . ..+.+..|+.+++-+ ..-+.+-+...++.+-+.|.+.
T Consensus 351 vl~El~eYatevD~~fvrkaIraig~~aik~e-----~--~~~cv~~lLell~~~-~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 351 VLAELKEYATEVDVDFVRKAVRAIGRLAIKAE-----Q--SNDCVSILLELLETK-VDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhh-----h--hhhhHHHHHHHHhhc-ccceeeehhHHHHhhhhcCCCc
Confidence 1111222222344555667777766654321 1 168899999999866 4455566677777777766654
No 152
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.92 E-value=0.0029 Score=62.30 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHh
Q 041252 67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFS 101 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~ 101 (450)
.+++.||||...++||++++|||+.||.|-..-+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 35788999999999999999999999999775543
No 153
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.88 E-value=0.62 Score=51.33 Aligned_cols=246 Identities=14% Similarity=0.173 Sum_probs=148.8
Q ss_pred HHHHhhCChHHHHhhhCCCC----ChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhc----CCC----HHHHHH
Q 041252 185 KTMVDEGGVALISSLLGPFT----SHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLN----EGS----VETKIN 252 (450)
Q Consensus 185 ~~i~~~G~i~~Lv~lL~~~~----~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~----~~~----~~~~~~ 252 (450)
..+.+.||+..++.+|.+.. ........+.+|...+.-..||+.+.+.|+++.|++.|. .++ .++-+.
T Consensus 111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence 45678899999999987632 345666778888888889999999999999999999885 323 566777
Q ss_pred HHHHHHHHhccCC---Chhh-----Hhh----hhhHHHHHHHHHhcC---CCccchhHHHHHHHHhccCh-HHHHHHHhc
Q 041252 253 CTRLIEKLMEEKD---FRPE-----IVS----SHRLLIGLMRLVKNK---RHPNGILPGLSLLRSICLLN-EVRSLVVSI 316 (450)
Q Consensus 253 aa~~L~~La~~~~---~~~~-----~~~----~~g~l~~Lv~lL~~~---~~~~~~~~al~aL~~Ls~~~-~~~~~iv~~ 316 (450)
...++..|..... .... ... ...-+..+++.+.+. .++.+....++.|-+|+..+ +.-..+++.
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence 7777777742211 1100 000 223466666666653 24566778888899998544 444444432
Q ss_pred CCHHHHHHhc--CC---CChhH-HHHHHHHHHHhcCCh---hhHHHHhccCCChHHHHHHHhcC--------ChHHH---
Q 041252 317 GAVPQLVELL--PS---LDPDC-LQLALCILDALSSLP---EGKLALKDCANTIPNTVRLLMRV--------SEDCT--- 376 (450)
Q Consensus 317 G~v~~Lv~lL--~~---~~~~~-~~~al~~L~~L~~~~---e~r~~i~~~~g~i~~Lv~lL~~~--------s~~~~--- 376 (450)
+.+.+++= .. .+... .+..+.+...+-.+. .-|..+.+ .|.+...++.|..+ |++.+
T Consensus 271 --F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l 347 (802)
T PF13764_consen 271 --FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSLKNTDSPEWKEFL 347 (802)
T ss_pred --HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence 12222211 10 11112 222233333332222 34677777 79999899888764 23333
Q ss_pred -----HHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252 377 -----QYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT 435 (450)
Q Consensus 377 -----e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~ 435 (450)
.+++..|.-+|.... . .+.++..++++.+-.+=+..+...+-.-|-.+|.-++.+..
T Consensus 348 ~~psLp~iL~lL~GLa~gh~-~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~ 409 (802)
T PF13764_consen 348 SRPSLPYILRLLRGLARGHE-P-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENED 409 (802)
T ss_pred cCCcHHHHHHHHHHHHhcCH-H-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence 457888888888664 2 23446666775554444555455666777777777776543
No 154
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.85 E-value=0.45 Score=44.34 Aligned_cols=150 Identities=17% Similarity=0.138 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCC----CCChhhHHHHHHHHHhcCCCc--hhhhhccCCCchHHH
Q 041252 165 ARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGP----FTSHAVGSEAVGVLVNLTLDS--ESKTNLMQPAKVSLL 238 (450)
Q Consensus 165 ~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~----~~~~~v~~~Al~~L~~Ls~~~--~~k~~i~~~g~i~~L 238 (450)
-...|+.-|+-++ .+++.|..+..+..---|-.+|.. ...+-.+-.+++++..|...+ +.-..+...+.||..
T Consensus 95 RVcnaL~LlQcvA-SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVA-SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHh-cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 4455666666665 568889988888743344566643 223446677899999877644 445567789999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh------hh-hhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHH
Q 041252 239 VDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV------SS-HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRS 311 (450)
Q Consensus 239 v~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~------~~-~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~ 311 (450)
++.+..|+...+.-|+.++..+..++.....+- .. .-.+..++.-+.+..++...+.+.++..+|+.++..|.
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~ 253 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA 253 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999998866654332221 11 12344444444444467778899999999999998887
Q ss_pred HHHh
Q 041252 312 LVVS 315 (450)
Q Consensus 312 ~iv~ 315 (450)
.+..
T Consensus 254 aL~~ 257 (293)
T KOG3036|consen 254 ALRS 257 (293)
T ss_pred HHHh
Confidence 6654
No 155
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.82 E-value=0.9 Score=42.42 Aligned_cols=153 Identities=19% Similarity=0.086 Sum_probs=107.7
Q ss_pred cchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCC-----CChhHHHHHHHHHHHhcCCh--hhHHHHhccCCChHH
Q 041252 291 NGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPS-----LDPDCLQLALCILDALSSLP--EGKLALKDCANTIPN 363 (450)
Q Consensus 291 ~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~-----~~~~~~~~al~~L~~L~~~~--e~r~~i~~~~g~i~~ 363 (450)
+-+-+++..|.-++++++.|..++++..--.|..+|.. ..+.++-.+++++..|..++ +.-..+.. .+.||.
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~-TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLT-TEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHH-hhhHHH
Confidence 34568888999999999999999999877777777733 24678899999999999773 33334445 799999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcccCchh--HHHHHHh----cChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCC
Q 041252 364 TVRLLMRVSEDCTQYALSILWSICKIAPEE--CSSAAVD----AGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDT 437 (450)
Q Consensus 364 Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~--~~~~~~~----~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~ 437 (450)
.++.+..+|+..+..|..++-.+-..+..- ..+..-+ +-.+..++.-+.+..++++-+.+.+..-.++.|.+..
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999998876655331 1111111 1223333333333336777777777777777776666
Q ss_pred ccccccc
Q 041252 438 TFISKCK 444 (450)
Q Consensus 438 ~~i~~~~ 444 (450)
...++|.
T Consensus 253 ~aL~~cl 259 (293)
T KOG3036|consen 253 AALRSCL 259 (293)
T ss_pred HHHHhhC
Confidence 6666664
No 156
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.75 E-value=0.38 Score=50.25 Aligned_cols=226 Identities=15% Similarity=0.106 Sum_probs=143.5
Q ss_pred hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhh
Q 041252 193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVS 272 (450)
Q Consensus 193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~ 272 (450)
+..+..-+... +..+++.....|..+....+.. ...-..+.+.+++.......+..++..+..+..+.. .+...
T Consensus 98 ~~~~~~~~~tp-s~~~q~~~~~~l~~~~~~~~~~---~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~~ 171 (569)
T KOG1242|consen 98 IEILLEELDTP-SKSVQRAVSTCLPPLVVLSKGL---SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESLK 171 (569)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHhhhHHHHhhcc---CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhhh
Confidence 34455555543 5667766666665544322221 123457788888988899999999999999965442 33456
Q ss_pred hhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhc---CCCChhHHHHHHHHHHHhcCC--
Q 041252 273 SHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELL---PSLDPDCLQLALCILDALSSL-- 347 (450)
Q Consensus 273 ~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL---~~~~~~~~~~al~~L~~L~~~-- 347 (450)
..+++..|-..+.++.+..-++.++-+.-..+.+- ....+.+.++.+-.++ .+..+.+++.|..+...+-.+
T Consensus 172 ~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L---g~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 172 EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL---GPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc---CCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 67888888888887643333333333333332211 1344556666666666 445678888888887777554
Q ss_pred hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHH
Q 041252 348 PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELL 427 (450)
Q Consensus 348 ~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL 427 (450)
+.+-+.+ +|+++.-+....=+.+.+++..|..+..+.+.. -......++|.|...|.+. .+++|+++...+
T Consensus 249 ~~aVK~l------lpsll~~l~~~kWrtK~aslellg~m~~~ap~q--Ls~~lp~iiP~lsevl~DT-~~evr~a~~~~l 319 (569)
T KOG1242|consen 249 AYAVKLL------LPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ--LSLCLPDLIPVLSEVLWDT-KPEVRKAGIETL 319 (569)
T ss_pred cchhhHh------hhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH--HHHHHhHhhHHHHHHHccC-CHHHHHHHHHHH
Confidence 3333333 334444444333466788899999888888643 3445567999999999775 799999999887
Q ss_pred HHHHhhcCC
Q 041252 428 KLCSLNYTD 436 (450)
Q Consensus 428 ~~ls~~~~~ 436 (450)
..+...-.+
T Consensus 320 ~~~~svidN 328 (569)
T KOG1242|consen 320 LKFGSVIDN 328 (569)
T ss_pred HHHHHhhcc
Confidence 776665444
No 157
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.72 E-value=1.4 Score=46.03 Aligned_cols=249 Identities=16% Similarity=0.176 Sum_probs=125.1
Q ss_pred HHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHH
Q 041252 171 KELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETK 250 (450)
Q Consensus 171 ~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~ 250 (450)
+....+.+.+++.+.++ .|.|-.-|++. -+.+.-+++.++..++...- -..+ -...++.|-.+|.+.....|
T Consensus 249 r~~~~ll~~n~q~~~q~-----rpfL~~wls~k-~emV~lE~Ar~v~~~~~~nv-~~~~-~~~~vs~L~~fL~s~rv~~r 320 (898)
T COG5240 249 RATVELLKENSQALLQL-----RPFLNSWLSDK-FEMVFLEAARAVCALSEENV-GSQF-VDQTVSSLRTFLKSTRVVLR 320 (898)
T ss_pred HHHHHHHHhChHHHHHH-----HHHHHHHhcCc-chhhhHHHHHHHHHHHHhcc-CHHH-HHHHHHHHHHHHhcchHHHH
Confidence 33334444444444443 24444455443 34566667777665553210 0000 02346666777777788888
Q ss_pred HHHHHHHHHHhccCCC--------hhhHhhh------------------hhHHHHHHHHHhc---CCCccchhHHHHHHH
Q 041252 251 INCTRLIEKLMEEKDF--------RPEIVSS------------------HRLLIGLMRLVKN---KRHPNGILPGLSLLR 301 (450)
Q Consensus 251 ~~aa~~L~~La~~~~~--------~~~~~~~------------------~g~l~~Lv~lL~~---~~~~~~~~~al~aL~ 301 (450)
-.|.++|-.|+...+. ....+.. ..-+..|+.++.+ ..+...+.-+..|++
T Consensus 321 FsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~r 400 (898)
T COG5240 321 FSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALR 400 (898)
T ss_pred HHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHH
Confidence 8888888887532211 0111100 0122333332221 123456667777888
Q ss_pred Hhcc-ChHHHHH--------HHhcCC-------HHHHHHhcCCCChhHHHHHHHHHHHhcCChh-hHHHHh-----ccCC
Q 041252 302 SICL-LNEVRSL--------VVSIGA-------VPQLVELLPSLDPDCLQLALCILDALSSLPE-GKLALK-----DCAN 359 (450)
Q Consensus 302 ~Ls~-~~~~~~~--------iv~~G~-------v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e-~r~~i~-----~~~g 359 (450)
.||. .+.-+.. +.+.|+ |+++.+++. ..|+.+|.|+..|+.....-+ ++..+. ..+|
T Consensus 401 sLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~Eg 479 (898)
T COG5240 401 SLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREG 479 (898)
T ss_pred HHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccC
Confidence 8873 3332222 233453 344455443 356778877766655443222 111111 1011
Q ss_pred ----ChHHHHHHHhc----CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252 360 ----TIPNTVRLLMR----VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS 431 (450)
Q Consensus 360 ----~i~~Lv~lL~~----~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls 431 (450)
.-...|+.+-+ .+.-++..|+.+|..++.+..+.. ....+...|-..+... ++.+|..|.-+|+.+.
T Consensus 480 P~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~----~~~sv~~~lkRclnD~-DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 480 PRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV----SPQSVENALKRCLNDQ-DDEVRDRASFLLRNMR 554 (898)
T ss_pred CCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc----cHHHHHHHHHHHhhcc-cHHHHHHHHHHHHhhh
Confidence 11112222211 245567788888887776654322 2223444455566554 7899999999999987
Q ss_pred hh
Q 041252 432 LN 433 (450)
Q Consensus 432 ~~ 433 (450)
..
T Consensus 555 ~~ 556 (898)
T COG5240 555 LS 556 (898)
T ss_pred hh
Confidence 54
No 158
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.29 Score=50.65 Aligned_cols=222 Identities=14% Similarity=0.122 Sum_probs=136.7
Q ss_pred ChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHH----hccCCChhhHhhhhhHHHHH
Q 041252 205 SHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKL----MEEKDFRPEIVSSHRLLIGL 280 (450)
Q Consensus 205 ~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~L----a~~~~~~~~~~~~~g~l~~L 280 (450)
+...+.-.+..|..|-.-+.-.-.=--+..++-|..+|..++.++|..+-.+|.++ .+..+. +.-...++.+
T Consensus 180 n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s----~d~~~~i~vl 255 (675)
T KOG0212|consen 180 NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS----MDYDDMINVL 255 (675)
T ss_pred CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc----cCcccchhhc
Confidence 44556556666665443222111101145677788888888999998877766555 222222 1223345667
Q ss_pred HHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCCh-hHHHHHHH---HHHHhcCChhhHHHHhc
Q 041252 281 MRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDP-DCLQLALC---ILDALSSLPEGKLALKD 356 (450)
Q Consensus 281 v~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~-~~~~~al~---~L~~L~~~~e~r~~i~~ 356 (450)
+.-+.++ ++..+..|+.-|.....-.......--.|++..++.++++..+ .+++.+.. .|..+++.+.....+ +
T Consensus 256 v~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~i-d 333 (675)
T KOG0212|consen 256 VPHLQSS-EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEI-D 333 (675)
T ss_pred cccccCC-cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhcccc-c
Confidence 7666664 5677777776666665433333333346788888888877655 34444433 355566655555443 3
Q ss_pred cCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252 357 CANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT 435 (450)
Q Consensus 357 ~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~ 435 (450)
-...|..+-+.+.......+-.++.-+..+-...|.+. .......++.|+.-+... ++.+-..+..++..+....+
T Consensus 334 ~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql--~~h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 334 YGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL--LVHNDSIFLTLLKTLSDR-SDEVVLLALSLLASICSSSN 409 (675)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh--hhhccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhcCcc
Confidence 12467777888887788888888888888877776542 344567888888877655 67777888888877665533
No 159
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.60 E-value=0.085 Score=49.95 Aligned_cols=97 Identities=22% Similarity=0.330 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHh-cCCCchhhhhccCCCchHHHHHHhc
Q 041252 165 ARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVN-LTLDSESKTNLMQPAKVSLLVDMLN 243 (450)
Q Consensus 165 ~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~-Ls~~~~~k~~i~~~g~i~~Lv~lL~ 243 (450)
....|+..|+-++--|+..|..+....++..++++|....+..++..++.+|.. |..++.|.+.+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 355688999999999999999999999999999999665567888899988888 6667789998889999999999998
Q ss_pred CC--CHHHHHHHHHHHHHHh
Q 041252 244 EG--SVETKINCTRLIEKLM 261 (450)
Q Consensus 244 ~~--~~~~~~~aa~~L~~La 261 (450)
+. +.++|..+...|+-..
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred cccccHHHhHHHHHHHHHHH
Confidence 65 6788888888876553
No 160
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.54 E-value=0.081 Score=56.16 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=78.8
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh--hhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh-HH
Q 041252 233 AKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR--PEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN-EV 309 (450)
Q Consensus 233 g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~--~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~-~~ 309 (450)
..+..+++.|++.++.+|+.|+.++..|+..-..+ ...++..| ..|.+-|... .+++.-..++||..+.... -.
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgee-ypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEE-YPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 45777888999999999999999999996322111 22344455 4455656554 6888888888888776321 11
Q ss_pred HHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC
Q 041252 310 RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL 347 (450)
Q Consensus 310 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 347 (450)
+..==-.|.+|.|..+|++....++++++..+..+|..
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr 913 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR 913 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc
Confidence 11111247889999999988999999999999999865
No 161
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=2.9 Score=44.77 Aligned_cols=253 Identities=16% Similarity=0.176 Sum_probs=154.5
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-Cchhhhh
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DSESKTN 228 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~~~k~~ 228 (450)
...+++.+|++..+.+|.+|+..|..+.-.=+ +++.- .+|-|+.-|... |..++..|+.+++.|+. ++.|--.
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYP---eAlr~--~FprL~EkLeDp-Dp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYP---EALRP--CFPRLVEKLEDP-DPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh---HhHhh--hHHHHHHhccCC-CchHHHHHHHHHHHHHhhCCccccc
Confidence 36678889999999999999999998876433 22221 368899988876 78999999999999986 3344322
Q ss_pred ccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHH--Hhcc
Q 041252 229 LMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLR--SICL 305 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~--~Ls~ 305 (450)
+ -|.+.++|.. .|.=+...-..+..+|+--.+ .. ...++++|..++.+..-..+.-.+..++. +++.
T Consensus 219 L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RL--gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 219 L-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RL--GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred c-----cHHHHHHHhccCCCeehHHHHHHHhhccccCc---hh--hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 2 3555566643 344444455556666643322 11 23356777777765321111112222211 2221
Q ss_pred ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252 306 LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW 384 (450)
Q Consensus 306 ~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~ 384 (450)
...+....+.. ++.-|-.++.+.|+.++-.++-++..+.. ++..-.+..+ .+++.|...++.++-.|+..|.
T Consensus 289 g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kd------lIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 289 GMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKD------LILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred CCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHH------HHHHHhccCCchhHHHHHHHHH
Confidence 11111111111 45677778888899999999999998874 4655555544 7788999899999999999988
Q ss_pred HhcccCchhHHHHHHhcChHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhh
Q 041252 385 SICKIAPEECSSAAVDAGLAAKLFLVI-QSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 385 ~L~~~~~~~~~~~~~~~G~i~~L~~ll-~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
.+.... + ..+ ++..|+..+ .+..+.---+....++..||.+
T Consensus 362 gmVskk--N-l~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 362 GMVSKK--N-LME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred HHhhhh--h-HHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 775532 2 222 334454433 3332222335566677777776
No 162
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.43 E-value=0.0089 Score=56.69 Aligned_cols=45 Identities=29% Similarity=0.580 Sum_probs=38.5
Q ss_pred CeeeCcCCCCCCCC---CeeCCCCCcccHHHHHHHHhcC--CCCCCCcCC
Q 041252 68 SVFVCPISLEPMQD---PVTLCTGQTYERSNILKWFSLG--RYTCPTTMQ 112 (450)
Q Consensus 68 ~~~~Cpi~~~~m~d---Pv~~~~g~ty~r~~I~~~~~~~--~~~cP~~~~ 112 (450)
+-|+||+.++.-.| |+.+.|||...+.++.+--++| .+.||.|-.
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 35899999998876 9999999999999999988877 456999943
No 163
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.37 E-value=0.053 Score=48.89 Aligned_cols=79 Identities=22% Similarity=0.216 Sum_probs=66.4
Q ss_pred HHHHHHhcCCHHHHHHhcCC---------CChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHH
Q 041252 309 VRSLVVSIGAVPQLVELLPS---------LDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYA 379 (450)
Q Consensus 309 ~~~~iv~~G~v~~Lv~lL~~---------~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A 379 (450)
-...+++.||+..|+.+|.. .+......++.+|..|..+..|...+..+.+++..++..|.+.+..++..+
T Consensus 99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~ 178 (187)
T PF06371_consen 99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLA 178 (187)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHH
Confidence 34577788999999988822 345788899999999999999999999989999999999999999999999
Q ss_pred HHHHHHhc
Q 041252 380 LSILWSIC 387 (450)
Q Consensus 380 ~~~L~~L~ 387 (450)
+.+|..+|
T Consensus 179 leiL~~lc 186 (187)
T PF06371_consen 179 LEILAALC 186 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999887
No 164
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.35 E-value=1.8 Score=42.55 Aligned_cols=191 Identities=19% Similarity=0.145 Sum_probs=105.0
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHh--hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC---chh
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVD--EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD---SES 225 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~---~~~ 225 (450)
+...+..+.......|..++..|..+...+.. -..+.+ .-.+..+.+.++... .+-+..|+.++..++.. .+.
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCcc
Confidence 55666677766778899999999888765432 222222 123567777777653 34555566666555443 122
Q ss_pred hhhccCCCchHHHHHHhcCC--CHHHHHHHHHHHHHHhc--cCCChhhHhhhhhHHHHHHHH--HhcCCC---------c
Q 041252 226 KTNLMQPAKVSLLVDMLNEG--SVETKINCTRLIEKLME--EKDFRPEIVSSHRLLIGLMRL--VKNKRH---------P 290 (450)
Q Consensus 226 k~~i~~~g~i~~Lv~lL~~~--~~~~~~~aa~~L~~La~--~~~~~~~~~~~~g~l~~Lv~l--L~~~~~---------~ 290 (450)
...+. ....+.|...+..+ ++..|..++.+|.-++. ..+ ...+......+..+... ++.+++ +
T Consensus 123 ~~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d-~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 123 SEEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSD-EEETEELMESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 22222 24567777777754 45666676666655532 111 11111111223322221 222211 2
Q ss_pred cchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252 291 NGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS 345 (450)
Q Consensus 291 ~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~ 345 (450)
.+..+|+.+-.-|. ..+.....-.-...++.|+.+|.+.+.+++..|-.+|+.|-
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34555555444333 22332222222456999999999999999999988888774
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.31 E-value=0.36 Score=53.33 Aligned_cols=204 Identities=12% Similarity=0.122 Sum_probs=136.2
Q ss_pred cCCCchHHHHHHhcCCCHHHHHHHHHHHHHH-hccCCChhhHhhhhhHHHHHHHHHhcC--CCccchhHHHHHHHHhc-c
Q 041252 230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKL-MEEKDFRPEIVSSHRLLIGLMRLVKNK--RHPNGILPGLSLLRSIC-L 305 (450)
Q Consensus 230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~L-a~~~~~~~~~~~~~g~l~~Lv~lL~~~--~~~~~~~~al~aL~~Ls-~ 305 (450)
..-|..|.++++|++.-.+.|..-+.+=..+ +-+.....+.+.+ ++-...++.|.++ -+++-+..|+-.|..++ .
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe-~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKE-NGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhc-cCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc
Confidence 3579999999999999999998877665554 4444334444433 3334444445442 12244556777788887 4
Q ss_pred ChHHHHHHHhcCCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252 306 LNEVRSLVVSIGAVPQLVELLPSL-DPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL 383 (450)
Q Consensus 306 ~~~~~~~iv~~G~v~~Lv~lL~~~-~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L 383 (450)
....+....+.+.+..=++.|.++ .+-++..++-.|..|=.+ +++|-.=.+ .++-..|+.+|....++++..|+-+|
T Consensus 588 f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~~LsD~vpEVRaAAVFAL 666 (1387)
T KOG1517|consen 588 FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLILLLSDPVPEVRAAAVFAL 666 (1387)
T ss_pred cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHHHhcCccHHHHHHHHHHH
Confidence 556777788889999888889775 466777777788888654 777766566 79999999999999999999999999
Q ss_pred HHhcccC----chhH--H---------HHHHhcChH---HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCC
Q 041252 384 WSICKIA----PEEC--S---------SAAVDAGLA---AKLFLVIQSGCNPVLKQRSAELLKLCSLNYTD 436 (450)
Q Consensus 384 ~~L~~~~----~~~~--~---------~~~~~~G~i---~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~ 436 (450)
..+-... ++.. . +..++.-.. ..++.+++.+ ++..+...+..|..+...|.+
T Consensus 667 gtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~ 736 (1387)
T KOG1517|consen 667 GTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVS 736 (1387)
T ss_pred HHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHH
Confidence 8876642 2211 1 011222222 2566666777 677776666666665555443
No 166
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.0091 Score=58.70 Aligned_cols=59 Identities=22% Similarity=0.437 Sum_probs=44.6
Q ss_pred eeCcCCCCCCCCCe-----eCCCCCcccHHHHHHHHhcC-CCCCCCcCCcCCCCCCcchHHHHHH
Q 041252 70 FVCPISLEPMQDPV-----TLCTGQTYERSNILKWFSLG-RYTCPTTMQELWDDSVTPNKTLYHL 128 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv-----~~~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~~l~~n~~L~~~ 128 (450)
-+||||.+-..-|+ ++.|||-|--+||++|+-+. ...||.|...-....+.+-.++|..
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 47999999888665 57899999999999999532 2359999765555666666666553
No 167
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=4.9 Score=43.63 Aligned_cols=254 Identities=16% Similarity=0.151 Sum_probs=134.9
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHH--------HHHHHHhh--CC----hHHHHhhhCCCC-----ChhhH
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHAS--------ARKTMVDE--GG----VALISSLLGPFT-----SHAVG 209 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~--------~r~~i~~~--G~----i~~Lv~lL~~~~-----~~~v~ 209 (450)
+..+++.+.|+..++.+|.+|+-++..+-...++ .|+.+.+. |+ +..+.++.+.+. ..+..
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~ 221 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLV 221 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3456677778888889999998888776655443 33444332 32 333444443321 11233
Q ss_pred HHHHHHHHhcCCCchhhh----hccCCC---chHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhh--h-----
Q 041252 210 SEAVGVLVNLTLDSESKT----NLMQPA---KVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSH--R----- 275 (450)
Q Consensus 210 ~~Al~~L~~Ls~~~~~k~----~i~~~g---~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~--g----- 275 (450)
..-+.+|.++....-..+ .|-++= -+-.++++|..++.+..+.-..+|..++...+..+.+..+. .
T Consensus 222 ~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI 301 (866)
T KOG1062|consen 222 PSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTI 301 (866)
T ss_pred HHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 445566666554221111 111110 13445666777888888888888888865444443332221 1
Q ss_pred ------------HHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHH
Q 041252 276 ------------LLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDA 343 (450)
Q Consensus 276 ------------~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~ 343 (450)
++..|-++|.+. +.+.+--|+..|..+...+.+..+=-+ ..+++.|++.|..++..|+..+..
T Consensus 302 ~~I~~~~~LrvlainiLgkFL~n~-d~NirYvaLn~L~r~V~~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~ 376 (866)
T KOG1062|consen 302 MDIRSNSGLRVLAINILGKFLLNR-DNNIRYVALNMLLRVVQQDPTAVQRHR----STILECLKDPDVSIKRRALELSYA 376 (866)
T ss_pred HhccCCchHHHHHHHHHHHHhcCC-ccceeeeehhhHHhhhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHH
Confidence 222333333332 233444444444444322221111111 267888999999999999999998
Q ss_pred hcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc-cCchhH--HHHH----------HhcChHHHHHHH
Q 041252 344 LSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK-IAPEEC--SSAA----------VDAGLAAKLFLV 410 (450)
Q Consensus 344 L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~-~~~~~~--~~~~----------~~~G~i~~L~~l 410 (450)
|.. +.|-..+++ .|+..|...++..+...++-+..++. .+|++. ...+ +...++.-++.+
T Consensus 377 lvn-~~Nv~~mv~------eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~L 449 (866)
T KOG1062|consen 377 LVN-ESNVRVMVK------ELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRL 449 (866)
T ss_pred Hhc-cccHHHHHH------HHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 875 445555544 56777766676666665555555543 344321 1111 223455666677
Q ss_pred HHcC
Q 041252 411 IQSG 414 (450)
Q Consensus 411 l~s~ 414 (450)
+.++
T Consensus 450 Ia~~ 453 (866)
T KOG1062|consen 450 IANA 453 (866)
T ss_pred HhcC
Confidence 7665
No 168
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=95.24 E-value=0.021 Score=39.75 Aligned_cols=45 Identities=18% Similarity=0.434 Sum_probs=25.4
Q ss_pred eeeCcCCCCCCCCCee-CCCCCc--ccHHHHHHHH-hcCCCCCCCcCCc
Q 041252 69 VFVCPISLEPMQDPVT-LCTGQT--YERSNILKWF-SLGRYTCPTTMQE 113 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~-~~~g~t--y~r~~I~~~~-~~~~~~cP~~~~~ 113 (450)
.+.|||+...|+-|+- ..|.|. ||-...-+.. ..+...||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 3689999999999996 458876 7775555543 3456789999763
No 169
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=0.51 Score=50.47 Aligned_cols=232 Identities=12% Similarity=0.093 Sum_probs=135.2
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHcHH----------------HHHHHHh--hCChHHHHhhhCCCC-----ChhhHHH
Q 041252 155 LGTLKKVKGQARVQALKELHQIAAAHAS----------------ARKTMVD--EGGVALISSLLGPFT-----SHAVGSE 211 (450)
Q Consensus 155 v~~L~~~~~~~~~~Al~~L~~l~~~~~~----------------~r~~i~~--~G~i~~Lv~lL~~~~-----~~~v~~~ 211 (450)
+..+++.+.++..++++.=..+|.+.-+ ++..... .+.+|.|+++|...+ |.--...
T Consensus 265 l~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~k 344 (859)
T KOG1241|consen 265 LAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAK 344 (859)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHH
Confidence 3344566666766666666656543221 1111111 155788888885421 1111122
Q ss_pred H----HHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcC
Q 041252 212 A----VGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNK 287 (450)
Q Consensus 212 A----l~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~ 287 (450)
| +..+..+..+ .|+ +-.++.+-.-+.+++-.-|+.|+-++..+..+.+.....-...++++.++.+..++
T Consensus 345 AAg~CL~l~A~~~~D-----~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~ 418 (859)
T KOG1241|consen 345 AAGVCLMLFAQCVGD-----DIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP 418 (859)
T ss_pred HHHHHHHHHHHHhcc-----cch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc
Confidence 2 2222222222 232 24556665667788999999999999988777665544445567899999998865
Q ss_pred CCccchhHHHHHHHHhccC-hHHHH-HHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hh-hHHH----Hhc--c
Q 041252 288 RHPNGILPGLSLLRSICLL-NEVRS-LVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PE-GKLA----LKD--C 357 (450)
Q Consensus 288 ~~~~~~~~al~aL~~Ls~~-~~~~~-~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e-~r~~----i~~--~ 357 (450)
+--++..++++|..++.+ ++-+. .....+.++.++.=|.+ .+.+..++++++.+|+.. .+ .... ... -
T Consensus 419 -sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y 496 (859)
T KOG1241|consen 419 -SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFY 496 (859)
T ss_pred -hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhH
Confidence 466778999999999843 33222 22234566666666653 678999999999999843 11 1111 111 0
Q ss_pred CCChHHHHHHHhcC---ChHHHHHHHHHHHHhcccCchhH
Q 041252 358 ANTIPNTVRLLMRV---SEDCTQYALSILWSICKIAPEEC 394 (450)
Q Consensus 358 ~g~i~~Lv~lL~~~---s~~~~e~A~~~L~~L~~~~~~~~ 394 (450)
.-.|..|++.-.+. ....+-.|-.+|..+-++++..+
T Consensus 497 ~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~v 536 (859)
T KOG1241|consen 497 EAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDV 536 (859)
T ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHH
Confidence 01233344433332 24567778888888888777543
No 170
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.0083 Score=55.74 Aligned_cols=54 Identities=19% Similarity=0.342 Sum_probs=41.5
Q ss_pred eeeCcCCCCCCCCC----------eeCCCCCcccHHHHHHHHhcC-CCCCCCcCCcCCCCCCcch
Q 041252 69 VFVCPISLEPMQDP----------VTLCTGQTYERSNILKWFSLG-RYTCPTTMQELWDDSVTPN 122 (450)
Q Consensus 69 ~~~Cpi~~~~m~dP----------v~~~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~~l~~n 122 (450)
+-.|-+|++-+-+. ..++|+|.|---||.-|.--| .++||.|++....+.+..|
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 45788888765543 478999999999999998755 5789999887655444444
No 171
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.21 E-value=0.25 Score=50.94 Aligned_cols=164 Identities=18% Similarity=0.214 Sum_probs=111.0
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCC---ccchhHHHHHHHHhccChHHHH
Q 041252 235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRH---PNGILPGLSLLRSICLLNEVRS 311 (450)
Q Consensus 235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~---~~~~~~al~aL~~Ls~~~~~~~ 311 (450)
...+.+++.+++...+..|..-|..|+.+.....+++ ...++..|.+++.++.. .......++++..+-.+.-.-.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi-~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFI-RCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHH-hcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 5567788889999999998888888877766655544 44558899999988632 2234455555554432222222
Q ss_pred HHHhcCCHHHHHHhc--CCCChhHHHHHHHHHHHhcCChh-hHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252 312 LVVSIGAVPQLVELL--PSLDPDCLQLALCILDALSSLPE-GKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK 388 (450)
Q Consensus 312 ~iv~~G~v~~Lv~lL--~~~~~~~~~~al~~L~~L~~~~e-~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 388 (450)
..+....|...+.+. .-.+..+...|+..|.++..++. -+..+.+ +--+..|++.+...+...+..|.+.+-++..
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~e-ev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAE-EVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHh-cCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 223323333333333 22356788999999999987755 5555555 6789999999999999999999999999888
Q ss_pred cCchhHHHHHHh
Q 041252 389 IAPEECSSAAVD 400 (450)
Q Consensus 389 ~~~~~~~~~~~~ 400 (450)
..++..+..+.+
T Consensus 243 ~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 243 KAPDDKRFEMAK 254 (713)
T ss_pred hCChHHHHHHHH
Confidence 777654444443
No 172
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.15 E-value=0.026 Score=39.91 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHH
Q 041252 207 AVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKL 260 (450)
Q Consensus 207 ~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~L 260 (450)
.++..|+.+|.+++........-.....++.|+.+|.+++.++|.+|+++|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 478899999999876554444445578899999999988899999999999765
No 173
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.18 Score=52.90 Aligned_cols=111 Identities=15% Similarity=0.094 Sum_probs=84.1
Q ss_pred hhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHh
Q 041252 224 ESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSI 303 (450)
Q Consensus 224 ~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~L 303 (450)
+.-..|+..|+-..+|.-|..+-.++|.+|...+..|+.....- ....+.-|+.+++++ ...++..|..+|..+
T Consensus 364 ~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F-----A~~aldfLvDMfNDE-~~~VRL~ai~aL~~I 437 (823)
T KOG2259|consen 364 EEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF-----AVRALDFLVDMFNDE-IEVVRLKAIFALTMI 437 (823)
T ss_pred ccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 33456888999999999998888999999999999998654321 234678999999987 467888999999998
Q ss_pred ccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252 304 CLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS 345 (450)
Q Consensus 304 s~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~ 345 (450)
+.+-.. +..-++.+++.|.+.+.++++..-..|.+.-
T Consensus 438 s~~l~i-----~eeql~~il~~L~D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 438 SVHLAI-----REEQLRQILESLEDRSVDVREALRELLKNAR 474 (823)
T ss_pred HHHhee-----cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 876332 2334567777777778888887777776554
No 174
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.26 Score=51.96 Aligned_cols=172 Identities=15% Similarity=0.121 Sum_probs=121.5
Q ss_pred ChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhh---hccC--CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCC
Q 041252 192 GVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT---NLMQ--PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDF 266 (450)
Q Consensus 192 ~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~---~i~~--~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~ 266 (450)
+.|.|..+|.+. +...++.|.++|..++.+....- ..-. .-.+|.++.+.++.++..|..|...+-...-...
T Consensus 129 lLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~- 206 (885)
T KOG2023|consen 129 LLPQLCELLDSP-DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT- 206 (885)
T ss_pred HHHHHHHHhcCC-cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-
Confidence 367888999875 67888999999998876543211 1111 2358899999999999999999998876643322
Q ss_pred hhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHh--cCCHHHHHHhcCCCChhHHHHHHHHHHHh
Q 041252 267 RPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVS--IGAVPQLVELLPSLDPDCLQLALCILDAL 344 (450)
Q Consensus 267 ~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~--~G~v~~Lv~lL~~~~~~~~~~al~~L~~L 344 (450)
......-..+++.|+.+-.+. +++++++...+|..|-.....| ++- .++|+..+..-++.+.++.-.|+.....+
T Consensus 207 qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dk--l~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDK--LVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHh--cccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 222334456888888887665 7999999999998886432222 332 46777788888888999999999999999
Q ss_pred cCChhhHHHHhcc-CCChHHHHHHH
Q 041252 345 SSLPEGKLALKDC-ANTIPNTVRLL 368 (450)
Q Consensus 345 ~~~~e~r~~i~~~-~g~i~~Lv~lL 368 (450)
|..+--+..+..+ ...||.|++-|
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M 308 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGM 308 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccC
Confidence 9988555555431 13566666543
No 175
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=3.9 Score=44.32 Aligned_cols=213 Identities=18% Similarity=0.190 Sum_probs=127.7
Q ss_pred ChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHH
Q 041252 205 SHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLV 284 (450)
Q Consensus 205 ~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL 284 (450)
+.-+...|+.+|.+++..+-. +...|.+.++|++.++-+|..|+-+...+-.......+. +++.--++|
T Consensus 120 nq~vVglAL~alg~i~s~Ema------rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL 188 (866)
T KOG1062|consen 120 NQYVVGLALCALGNICSPEMA------RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLL 188 (866)
T ss_pred CeeehHHHHHHhhccCCHHHh------HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHH
Confidence 456778899999998865433 345788888999999999999998888775444333333 345556667
Q ss_pred hcCCCccchhHHHHHHHHhcc-ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC---hh-hH----HHHh
Q 041252 285 KNKRHPNGILPGLSLLRSICL-LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL---PE-GK----LALK 355 (450)
Q Consensus 285 ~~~~~~~~~~~al~aL~~Ls~-~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~---~e-~r----~~i~ 355 (450)
.++ |..+...++..+..+|. ++++-...-+ .++.|| .+|+++... +| +- .-|.
T Consensus 189 ~ek-~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV---------------~iLk~l~~~~yspeydv~gi~dPFL 250 (866)
T KOG1062|consen 189 CEK-HHGVLIAGLHLITELCKISPDALSYFRD--LVPSLV---------------KILKQLTNSGYSPEYDVHGISDPFL 250 (866)
T ss_pred hhc-CCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHH---------------HHHHHHhcCCCCCccCccCCCchHH
Confidence 765 67888899998888884 3433333322 334444 444444432 11 00 0011
Q ss_pred ccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHH-HHhhc
Q 041252 356 DCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKL-CSLNY 434 (450)
Q Consensus 356 ~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~-ls~~~ 434 (450)
. - =|-.++++|..+.....+.-..+|..++.+.... +-+-.+=....+..++.-..++..+..|+.+|.- +....
T Consensus 251 Q-i-~iLrlLriLGq~d~daSd~M~DiLaqvatntdss--kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d 326 (866)
T KOG1062|consen 251 Q-I-RILRLLRILGQNDADASDLMNDILAQVATNTDSS--KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD 326 (866)
T ss_pred H-H-HHHHHHHHhcCCCccHHHHHHHHHHHHHhccccc--ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc
Confidence 1 0 0123455566666777777777787777655322 1111222333334444333456777777765544 55557
Q ss_pred CCCccccccccccccC
Q 041252 435 TDTTFISKCKLTRTIQ 450 (450)
Q Consensus 435 ~~~~~i~~~~~~~~~~ 450 (450)
.|..+++=-+|++++|
T Consensus 327 ~NirYvaLn~L~r~V~ 342 (866)
T KOG1062|consen 327 NNIRYVALNMLLRVVQ 342 (866)
T ss_pred cceeeeehhhHHhhhc
Confidence 7888888888887765
No 176
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.96 E-value=0.5 Score=45.67 Aligned_cols=222 Identities=16% Similarity=0.151 Sum_probs=142.9
Q ss_pred hhHHHHHHHHHhcCCCchhhhhc-cCCCchHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHH
Q 041252 207 AVGSEAVGVLVNLTLDSESKTNL-MQPAKVSLLVDMLNE--GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRL 283 (450)
Q Consensus 207 ~v~~~Al~~L~~Ls~~~~~k~~i-~~~g~i~~Lv~lL~~--~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~l 283 (450)
-.+--|+..|.++....+.|..+ .+...-..+++.+++ |..+.+-+..-+++.|+-.......+-.-...+.-|+.+
T Consensus 164 lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~i 243 (432)
T COG5231 164 LTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAI 243 (432)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888888888777654 445566777888875 468899999999999975544332222334678888888
Q ss_pred HhcCCCccchhHHHHHHHHhcc--ChHHHHHHHhcCCHHHHHHhcCC---CChhHHHHH---HHHHH----HhcCCh---
Q 041252 284 VKNKRHPNGILPGLSLLRSICL--LNEVRSLVVSIGAVPQLVELLPS---LDPDCLQLA---LCILD----ALSSLP--- 348 (450)
Q Consensus 284 L~~~~~~~~~~~al~aL~~Ls~--~~~~~~~iv~~G~v~~Lv~lL~~---~~~~~~~~a---l~~L~----~L~~~~--- 348 (450)
++......+.+-+++.+.|++. +......+.-.|-+..-+++|.. ++++++..- -..|. .||.-+
T Consensus 244 Vk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~ 323 (432)
T COG5231 244 VKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYL 323 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 8865445577788888889884 34555566666655555666632 244333211 11111 122111
Q ss_pred ---------------------hhHHHHh-ccCCChHHHHHHHhcCChH-HHHHHHHHHHHhcccCchhHHHHHHhcChHH
Q 041252 349 ---------------------EGKLALK-DCANTIPNTVRLLMRVSED-CTQYALSILWSICKIAPEECSSAAVDAGLAA 405 (450)
Q Consensus 349 ---------------------e~r~~i~-~~~g~i~~Lv~lL~~~s~~-~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~ 405 (450)
.|-..+. +.-..+..|.++++...+. .-.-|+.=+..+....|+. ......-|+=.
T Consensus 324 ~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~-~~vl~Kyg~k~ 402 (432)
T COG5231 324 NELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI-NAVLSKYGVKE 402 (432)
T ss_pred HHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH-HHHHHHhhhHH
Confidence 1222222 2223567778888776554 4556777777777777753 34455789999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252 406 KLFLVIQSGCNPVLKQRSAELLKLC 430 (450)
Q Consensus 406 ~L~~ll~s~~~~~~k~~A~~lL~~l 430 (450)
.++.++.++ ++++|-.|...+..|
T Consensus 403 ~im~L~nh~-d~~VkfeAl~a~q~~ 426 (432)
T COG5231 403 IIMNLINHD-DDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHhcCC-CchhhHHHHHHHHHH
Confidence 999999887 789999999888775
No 177
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.94 E-value=0.23 Score=51.88 Aligned_cols=237 Identities=18% Similarity=0.169 Sum_probs=128.5
Q ss_pred hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh---hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhh
Q 041252 193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK---TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPE 269 (450)
Q Consensus 193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k---~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~ 269 (450)
|..++..|++. ...++..|+.+...|+.--.++ +.+...|.| |-+-|....+++.-....++..+.+.......
T Consensus 606 vStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 606 VSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 34445566654 5677777776666554311111 111122222 33455666788877766777766544433322
Q ss_pred HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHh-cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-
Q 041252 270 IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVS-IGAVPQLVELLPSLDPDCLQLALCILDALSSL- 347 (450)
Q Consensus 270 ~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~-~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~- 347 (450)
.--..|++|.|..+|+++ +..++.+....+..+|.+........| ...---|+++|.+.+.+++.+|...+..++..
T Consensus 683 qpPi~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 683 QPPISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred CCchhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 223357899999999987 788999999988888854432222222 12223578888888999999998888877653
Q ss_pred -hhh-------------H-HHHhc--------cCCChHHHHHHHhc----CChHHHHHHHHHHHHhcccCchhHHHHHHh
Q 041252 348 -PEG-------------K-LALKD--------CANTIPNTVRLLMR----VSEDCTQYALSILWSICKIAPEECSSAAVD 400 (450)
Q Consensus 348 -~e~-------------r-~~i~~--------~~g~i~~Lv~lL~~----~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~ 400 (450)
|.. | ..+.. ...|.-.++-.|++ ....++.-.+.++..+...-. +....-+
T Consensus 762 GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig-~~s~dYv- 839 (975)
T COG5181 762 GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG-QASLDYV- 839 (975)
T ss_pred CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH-HHHHHHH-
Confidence 211 1 11111 01111122222222 234556544444433322211 1111111
Q ss_pred cChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCC
Q 041252 401 AGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTD 436 (450)
Q Consensus 401 ~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~ 436 (450)
--..|.|-+.|... ++.-|+-|+.+++.++.|-..
T Consensus 840 y~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 840 YSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred HHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCC
Confidence 12334444555444 688889999999998888443
No 178
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=94.94 E-value=0.14 Score=41.30 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhc-CChhhHHHHhccCCChHHHHHHHhc--CChHHHHHHHHHHHHhcccCchh
Q 041252 333 CLQLALCILDALS-SLPEGKLALKDCANTIPNTVRLLMR--VSEDCTQYALSILWSICKIAPEE 393 (450)
Q Consensus 333 ~~~~al~~L~~L~-~~~e~r~~i~~~~g~i~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~~~~ 393 (450)
.+...+.+|.||+ .+++++..+++ -||||.++..-.. .+|-.+|.|+.++.+||..+++.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eN 64 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPEN 64 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHH
Confidence 3566788999999 45899999998 7899999988644 46899999999999999998753
No 179
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.89 E-value=4.3 Score=40.32 Aligned_cols=208 Identities=10% Similarity=0.072 Sum_probs=141.7
Q ss_pred ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-C----hhhHh-hh-hhHHHHHHHHHhcCCCccchhHHHHHHH
Q 041252 229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD-F----RPEIV-SS-HRLLIGLMRLVKNKRHPNGILPGLSLLR 301 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~-~----~~~~~-~~-~g~l~~Lv~lL~~~~~~~~~~~al~aL~ 301 (450)
+...+.+..|+..|..-+-+.|..++.+..++..... . ..+.+ .. ..++..|+ ..-.+++.--.+...|+
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~---~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILL---RGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHH---HGGGSTTTHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHH---HHhcCccccchHHHHHH
Confidence 3456788999999998899999999999998863321 1 11222 22 23344443 33235667777878888
Q ss_pred HhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc-CChhhHHHHhcc--CCChHHHHHHHhcCChHHHHH
Q 041252 302 SICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS-SLPEGKLALKDC--ANTIPNTVRLLMRVSEDCTQY 378 (450)
Q Consensus 302 ~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~-~~~e~r~~i~~~--~g~i~~Lv~lL~~~s~~~~e~ 378 (450)
....++.....+.+...+-.+.+.+..++-++...|..++..|- .+..--..+... ...+....++|.+.+--++..
T Consensus 149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 149 ECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 88899888888888889999999999999999999999999854 555554554431 124557778888888899999
Q ss_pred HHHHHHHhcccCchhH--HHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCccc
Q 041252 379 ALSILWSICKIAPEEC--SSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFI 440 (450)
Q Consensus 379 A~~~L~~L~~~~~~~~--~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~i 440 (450)
++..|..+-....... .+-+-...-+..++.+|++. +..++-.|--+.|++-.|...++-|
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I 291 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPI 291 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHH
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHH
Confidence 9999999866543221 12222334456667777776 7889999999999998886665544
No 180
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.02 Score=54.03 Aligned_cols=46 Identities=28% Similarity=0.425 Sum_probs=39.2
Q ss_pred eCcCCC-CCCCCCe----eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 71 VCPISL-EPMQDPV----TLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 71 ~Cpi~~-~~m~dPv----~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
-||+|+ +.+..|- +-+|||+-|.+|...-|..|...||.|+..+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 399998 6777775 237999999999999999999999999987654
No 181
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.83 E-value=1 Score=42.53 Aligned_cols=174 Identities=17% Similarity=0.160 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCC-C---hhhHHHHHHHHHhcCCCc--hhhhhccCCCchHHH
Q 041252 165 ARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFT-S---HAVGSEAVGVLVNLTLDS--ESKTNLMQPAKVSLL 238 (450)
Q Consensus 165 ~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~-~---~~v~~~Al~~L~~Ls~~~--~~k~~i~~~g~i~~L 238 (450)
-...|+.-|+-++. |++.|..+.++...--|-.+|.... + +-.+-.+++++..|...+ +.-..+.+...+|..
T Consensus 66 RVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplc 144 (262)
T PF04078_consen 66 RVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLC 144 (262)
T ss_dssp HHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHH
Confidence 44557777777775 7889999999997666777875431 1 235556788888877643 556677889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh-------hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHH
Q 041252 239 VDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV-------SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRS 311 (450)
Q Consensus 239 v~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~-------~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~ 311 (450)
++.+..|+.-.|.-|+.++..+-.++.....+- .-...+..++.-+....++...+...++-..|+.++..|.
T Consensus 145 Lr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~ 224 (262)
T PF04078_consen 145 LRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRARE 224 (262)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHH
Confidence 999999999999999999998865543322221 1123445555444444467788999999999999999888
Q ss_pred HHHhcCCHHHHHHhcCC--------CChhHHHHHHHHHHHh
Q 041252 312 LVVSIGAVPQLVELLPS--------LDPDCLQLALCILDAL 344 (450)
Q Consensus 312 ~iv~~G~v~~Lv~lL~~--------~~~~~~~~al~~L~~L 344 (450)
.+.. .|=+.|++ .|+.++..--..+.|+
T Consensus 225 aL~~-----~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 225 ALRQ-----CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HHHH-----HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HHHH-----hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 7774 22233433 2555555555555554
No 182
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.82 E-value=1.3 Score=44.46 Aligned_cols=237 Identities=19% Similarity=0.227 Sum_probs=131.3
Q ss_pred hcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHH-HHHHHHHhcCCCchhh
Q 041252 149 GRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGS-EAVGVLVNLTLDSESK 226 (450)
Q Consensus 149 ~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~-~Al~~L~~Ls~~~~~k 226 (450)
+-+..+++.|.++ +...|..++-.|...+. +++.|..+.+.|.+..++..+....+..+.. .++.++.-++.+..+-
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 4577788888743 44678888888877775 6789999999999999999885433332333 3444555566665555
Q ss_pred hhccCCCchHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhc------C--CCccchhHHH
Q 041252 227 TNLMQPAKVSLLVDMLNEG-SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN------K--RHPNGILPGL 297 (450)
Q Consensus 227 ~~i~~~g~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~------~--~~~~~~~~al 297 (450)
..+-+.+....++.++.-. ..+...... .......... ....+...-..+.. . .....+-.|+
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~--~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lal 171 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKV--QQKSRSLCKELLSSGSSWKSPKPPELSPQTLAL 171 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHH--HHHHHHHHHHHHhccccccccCCcccccccHHH
Confidence 5555667777778877611 000000000 0000000000 00011111111100 0 0112233445
Q ss_pred HHHHHhc---------------cChHHHHHHHhcCCHHHHHHhcCC----C------------ChhHHHHHHHHHHHhcC
Q 041252 298 SLLRSIC---------------LLNEVRSLVVSIGAVPQLVELLPS----L------------DPDCLQLALCILDALSS 346 (450)
Q Consensus 298 ~aL~~Ls---------------~~~~~~~~iv~~G~v~~Lv~lL~~----~------------~~~~~~~al~~L~~L~~ 346 (450)
.+|-.++ ..+-.|..+.+.|++..+++++.+ . +....+.++.+|.+.+-
T Consensus 172 l~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~ 251 (361)
T PF07814_consen 172 LALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTF 251 (361)
T ss_pred HHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHh
Confidence 5555552 112357778889999999999841 1 12456788999998874
Q ss_pred C-hhhHHHHhccC-CChHHHHHHHhc-CC---hHHHHHHHHHHHHhcccCchhH
Q 041252 347 L-PEGKLALKDCA-NTIPNTVRLLMR-VS---EDCTQYALSILWSICKIAPEEC 394 (450)
Q Consensus 347 ~-~e~r~~i~~~~-g~i~~Lv~lL~~-~s---~~~~e~A~~~L~~L~~~~~~~~ 394 (450)
. ++++..+..+. +.++.+...+.. .. ......++++|.|++.++++.+
T Consensus 252 ~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c 305 (361)
T PF07814_consen 252 LSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSAC 305 (361)
T ss_pred cCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccch
Confidence 3 56666655422 233333333332 22 3445789999999999987543
No 183
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.81 E-value=0.41 Score=45.20 Aligned_cols=193 Identities=19% Similarity=0.125 Sum_probs=117.0
Q ss_pred CCHHHHHHHHHHHHHHhccCCC---hhhHh-hhhhHHHHHHHHHhcC----CCc-------cchhHHHHHHHHhccChHH
Q 041252 245 GSVETKINCTRLIEKLMEEKDF---RPEIV-SSHRLLIGLMRLVKNK----RHP-------NGILPGLSLLRSICLLNEV 309 (450)
Q Consensus 245 ~~~~~~~~aa~~L~~La~~~~~---~~~~~-~~~g~l~~Lv~lL~~~----~~~-------~~~~~al~aL~~Ls~~~~~ 309 (450)
.+++.|++| |.+|+...+. ..-.+ .+-|.+..|++=+-+- ..+ +-+.+|+..|.-+++|++.
T Consensus 7 ~~~~~Re~A---l~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpet 83 (262)
T PF04078_consen 7 CNPETRENA---LLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPET 83 (262)
T ss_dssp SSHHHHHHH---HHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTT
T ss_pred cCcchHHHH---HHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHH
Confidence 357778874 5555543332 22222 4557666665532210 011 2234788888899999999
Q ss_pred HHHHHhcCCHHHHHHhcCCCC-----hhHHHHHHHHHHHhcCC--hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHH
Q 041252 310 RSLVVSIGAVPQLVELLPSLD-----PDCLQLALCILDALSSL--PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSI 382 (450)
Q Consensus 310 ~~~iv~~G~v~~Lv~lL~~~~-----~~~~~~al~~L~~L~~~--~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~ 382 (450)
|..+.++...-.|..+|...+ +.++-.+++++..|.+. +|.-.-+.+ ...||..++.|..+++-.|..|.-+
T Consensus 84 r~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~-tEiiplcLr~me~GselSKtvAtfI 162 (262)
T PF04078_consen 84 RMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ-TEIIPLCLRIMEFGSELSKTVATFI 162 (262)
T ss_dssp HHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC-TTHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh-hchHHHHHHHHHhccHHHHHHHHHH
Confidence 999999998887888874432 56788899999999975 445555566 7899999999999999999999988
Q ss_pred HHHhcccCch-------hHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCccccc
Q 041252 383 LWSICKIAPE-------ECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFISK 442 (450)
Q Consensus 383 L~~L~~~~~~-------~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~i~~ 442 (450)
+..+-..+.. ..+-.++.. ++..++.-+....+++.=+.....---++.|.+....+.+
T Consensus 163 lqKIL~dd~GL~yiC~t~eRf~av~~-vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 163 LQKILLDDVGLNYICQTAERFFAVAM-VLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHHHHSHHHHHHHTSSHHHHHHHHH-HHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHHHHcchhHHHHHhcCHHHHHHHHH-HHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8876443311 001112222 2333333333333666666666655556666554444443
No 184
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.78 E-value=0.46 Score=45.02 Aligned_cols=95 Identities=22% Similarity=0.287 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcC-CCChhHHHHHHHHHHHh-cCChhhHHHHhccCCChHHHHHHHh
Q 041252 293 ILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLP-SLDPDCLQLALCILDAL-SSLPEGKLALKDCANTIPNTVRLLM 369 (450)
Q Consensus 293 ~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~-~~~~~~~~~al~~L~~L-~~~~e~r~~i~~~~g~i~~Lv~lL~ 369 (450)
...|+..|.-++ .|+..|..+.+..++..|+++|+ +.++.++..++.+|-.+ ..++.|...|.+ .+|+..++.+++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~-~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEE-LNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHH-hCCHHHHHHHHc
Confidence 456778888888 78889999999999999999994 45688888888877665 577999999988 799999999998
Q ss_pred cCC--hHHHHHHHHHHHHhcc
Q 041252 370 RVS--EDCTQYALSILWSICK 388 (450)
Q Consensus 370 ~~s--~~~~e~A~~~L~~L~~ 388 (450)
+.+ .+++-..+..|+....
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 764 5777788888876543
No 185
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.57 E-value=0.035 Score=41.80 Aligned_cols=44 Identities=23% Similarity=0.469 Sum_probs=35.1
Q ss_pred eeCcCCCCCCCC----CeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252 70 FVCPISLEPMQD----PVTL-CTGQTYERSNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 70 ~~Cpi~~~~m~d----Pv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 114 (450)
=+||-|+--|.. |++- .|.|.|--.||.+|+.. ...||++++++
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w 80 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTW 80 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCcee
Confidence 358888876631 5543 59999999999999997 67899999875
No 186
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.34 E-value=0.58 Score=42.52 Aligned_cols=83 Identities=12% Similarity=-0.040 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHhcC-----CCccchhHHHHHHHHhccChHHHHHHHhc--CC--HHHHHHhcCCCChhHHHHHHHHHHHh
Q 041252 274 HRLLIGLMRLVKNK-----RHPNGILPGLSLLRSICLLNEVRSLVVSI--GA--VPQLVELLPSLDPDCLQLALCILDAL 344 (450)
Q Consensus 274 ~g~l~~Lv~lL~~~-----~~~~~~~~al~aL~~Ls~~~~~~~~iv~~--G~--v~~Lv~lL~~~~~~~~~~al~~L~~L 344 (450)
...+..|+..+..+ +...-....+..|.|++..++.|..+.+. +. +..|+.++...+..-+..++++|+|+
T Consensus 51 ~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNc 130 (192)
T PF04063_consen 51 GFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNC 130 (192)
T ss_pred HHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Confidence 45788888887762 12334567888999999999999999973 45 77888888877888889999999999
Q ss_pred cCChhhHHHHhc
Q 041252 345 SSLPEGKLALKD 356 (450)
Q Consensus 345 ~~~~e~r~~i~~ 356 (450)
|-..+....+..
T Consensus 131 cFd~~~H~~LL~ 142 (192)
T PF04063_consen 131 CFDTDSHEWLLS 142 (192)
T ss_pred hccHhHHHHhcC
Confidence 987777777765
No 187
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.29 E-value=0.3 Score=44.37 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=81.9
Q ss_pred CCCChhHHHHHHHHHHHhcCChhhHHHHhcc---------------CCChHHHHHHHhcC------ChHHHHHHHHHHHH
Q 041252 327 PSLDPDCLQLALCILDALSSLPEGKLALKDC---------------ANTIPNTVRLLMRV------SEDCTQYALSILWS 385 (450)
Q Consensus 327 ~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~---------------~g~i~~Lv~lL~~~------s~~~~e~A~~~L~~ 385 (450)
.+.+......++.+|.||+..+++...+.+. ...+..|++.+..+ ...--.+.+.+|.|
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 3455668889999999999999888865431 23677888888772 24556889999999
Q ss_pred hcccCchhHHHHHHh--cCh--HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCcc
Q 041252 386 ICKIAPEECSSAAVD--AGL--AAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTF 439 (450)
Q Consensus 386 L~~~~~~~~~~~~~~--~G~--i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~ 439 (450)
+++.. +.++...+ .+. +..|+-+.++. +...|..++.++|+|........+
T Consensus 85 lS~~~--~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H~~ 139 (192)
T PF04063_consen 85 LSQLP--EGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSHEW 139 (192)
T ss_pred hcCCH--HHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHHHH
Confidence 99876 34455553 445 78888888888 788889999999999988554333
No 188
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.27 E-value=0.057 Score=37.43 Aligned_cols=41 Identities=20% Similarity=0.431 Sum_probs=31.8
Q ss_pred eCcCCCC--CCCCCeeCCCC-----CcccHHHHHHHHhc-CCCCCCCcC
Q 041252 71 VCPISLE--PMQDPVTLCTG-----QTYERSNILKWFSL-GRYTCPTTM 111 (450)
Q Consensus 71 ~Cpi~~~--~m~dPv~~~~g-----~ty~r~~I~~~~~~-~~~~cP~~~ 111 (450)
.|-||++ --.+|.+.||. +.|=++|+.+|+.. +..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4788886 44578888875 67899999999975 356899984
No 189
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.27 E-value=0.22 Score=37.62 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=56.5
Q ss_pred hhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCC-CChhHHHHHHHHHHHhcCChhhHHHHhc
Q 041252 293 ILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPS-LDPDCLQLALCILDALSSLPEGKLALKD 356 (450)
Q Consensus 293 ~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~e~r~~i~~ 356 (450)
.+++++|+.++++.+.....+-+.++++.++++... +...++--|..+|..++.+.++.+.+.+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 578999999999988887777788999999999854 4678999999999999999999988865
No 190
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.22 E-value=0.043 Score=37.58 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=22.4
Q ss_pred CcCCCCCCC--CCeeC--CCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252 72 CPISLEPMQ--DPVTL--CTGQTYERSNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 72 Cpi~~~~m~--dPv~~--~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 114 (450)
||+|-+.|. |--.. +||+..||.|..+-.+.++..||-|++++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789988883 21223 58999999999888876678899999875
No 191
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.08 E-value=2.1 Score=46.60 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=52.4
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHH
Q 041252 319 VPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAA 398 (450)
Q Consensus 319 v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~ 398 (450)
+..+..=+.++++.++..|+.+|..|-. + ++.+ ..++++.+++.+.++.+++.|+-++..+-+.++ ...
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~~-~----el~~--~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~----~l~ 162 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLRV-K----ELLG--NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK----DLY 162 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcCh-H----HHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH----hhh
Confidence 3445555555666666655555554321 1 1221 244566666666666666666666666655443 123
Q ss_pred HhcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252 399 VDAGLAAKLFLVIQSGCNPVLKQRSAELLKLC 430 (450)
Q Consensus 399 ~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~l 430 (450)
.+.|.+..+..++... +|....+|...|+.+
T Consensus 163 ~~~g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i 193 (757)
T COG5096 163 HELGLIDILKELVADS-DPIVIANALASLAEI 193 (757)
T ss_pred hcccHHHHHHHHhhCC-CchHHHHHHHHHHHh
Confidence 3455555555555443 555666665555543
No 192
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.02 E-value=11 Score=41.90 Aligned_cols=219 Identities=17% Similarity=0.209 Sum_probs=117.2
Q ss_pred hcHHHHHHHhhccc----hHHHHH-HHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCC---CCC----hhhHHHHHHHH
Q 041252 149 GRASELLGTLKKVK----GQARVQ-ALKELHQIAAAHASARKTMVDEGGVALISSLLGP---FTS----HAVGSEAVGVL 216 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~----~~~~~~-Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~---~~~----~~v~~~Al~~L 216 (450)
+.+..++..|.+.. ...... .++-|+..+ .-+.||+.+.+.|+++.|+..|.. ... .++.+..+.++
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 45666666665421 222333 444444444 447899999999999999987741 112 35555555555
Q ss_pred HhcCCCch---h---hhhccCC-------CchHHHHHHhcCC----CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHH
Q 041252 217 VNLTLDSE---S---KTNLMQP-------AKVSLLVDMLNEG----SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIG 279 (450)
Q Consensus 217 ~~Ls~~~~---~---k~~i~~~-------g~i~~Lv~lL~~~----~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~ 279 (450)
-.+..... . ....... .-+..+++.+.+. ++.+....+.+|-.|+.+++...+.+.+ .+.+
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~p 273 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFKP 273 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHHH
Confidence 44322111 1 1111111 1255666666543 5778888888998887665433222111 1122
Q ss_pred HHHHHhcC-CCccchhHHHHHHHHhcc-------ChHHHHHHHhcCCHHHHHHhcCCC--------C--------hhHHH
Q 041252 280 LMRLVKNK-RHPNGILPGLSLLRSICL-------LNEVRSLVVSIGAVPQLVELLPSL--------D--------PDCLQ 335 (450)
Q Consensus 280 Lv~lL~~~-~~~~~~~~al~aL~~Ls~-------~~~~~~~iv~~G~v~~Lv~lL~~~--------~--------~~~~~ 335 (450)
.+++=+-. .+..--..-+..+..++. ....|..+++.|.+...++.|... + .....
T Consensus 274 ~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp 353 (802)
T PF13764_consen 274 YLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLP 353 (802)
T ss_pred hcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHH
Confidence 22211100 011111233555555541 134688899999999888887321 1 23456
Q ss_pred HHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCC
Q 041252 336 LALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVS 372 (450)
Q Consensus 336 ~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s 372 (450)
.++..|.-|+.....-+.+.. ..+| ++++.|...+
T Consensus 354 ~iL~lL~GLa~gh~~tQ~~~~-~~~l-~~lH~LEqvs 388 (802)
T PF13764_consen 354 YILRLLRGLARGHEPTQLLIA-EQLL-PLLHRLEQVS 388 (802)
T ss_pred HHHHHHHHHHhcCHHHHHHHH-hhHH-HHHHHhhcCC
Confidence 788888888876443333344 4677 5555555543
No 193
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.01 E-value=1.1 Score=48.34 Aligned_cols=217 Identities=12% Similarity=0.088 Sum_probs=133.7
Q ss_pred HHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHH-hcCCCchhhhhccCCCchHHHHHHhcCCCHHH--HHHHHHHHH
Q 041252 182 SARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLV-NLTLDSESKTNLMQPAKVSLLVDMLNEGSVET--KINCTRLIE 258 (450)
Q Consensus 182 ~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~-~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~--~~~aa~~L~ 258 (450)
.-|...++.|+...|+++.... .....-.+-.+|. .++...+ .....++++...+.+. ... .-.+..++.
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q-~e~akl~~~~aL~~~i~f~~~-----~~~~v~~~~~s~~~~d-~~~~en~E~L~alt 567 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQ-FEEAKLKWYHALAGKIDFPGE-----RSYEVVKPLDSALHND-EKGLENFEALEALT 567 (748)
T ss_pred HhcCccccccHHHHHHHHHHHh-chHHHHHHHHHHhhhcCCCCC-----chhhhhhhhcchhhhh-HHHHHHHHHHHHhh
Confidence 3455667889999999987653 4455555555655 1211100 0123444444444322 222 234566788
Q ss_pred HHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH-HHHHHHh-cCCHHHHHHhcCCCChhHHHH
Q 041252 259 KLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE-VRSLVVS-IGAVPQLVELLPSLDPDCLQL 336 (450)
Q Consensus 259 ~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~-~~~~iv~-~G~v~~Lv~lL~~~~~~~~~~ 336 (450)
||++.++..++-+...-.++.+-.++..+ ++..+.+++..+.||..++. ....+++ ...++.....+...+....-.
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 88876554443343333344444444444 67889999999999997766 4455666 467777777776667777777
Q ss_pred HHHHHHHhcCChhhHHH-HhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHH
Q 041252 337 ALCILDALSSLPEGKLA-LKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKL 407 (450)
Q Consensus 337 al~~L~~L~~~~e~r~~-i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L 407 (450)
+.+++..+....++... +.+...+...++.++++....++...+....++..... +..........++.+
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~-ei~~~~~~~~~~~~l 717 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALF-EIAEKIFETEVMELL 717 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHH-HHHHHhccchHHHHH
Confidence 78888877766655444 44435678899999999999999988888888554332 333444444444443
No 194
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.033 Score=56.04 Aligned_cols=51 Identities=18% Similarity=0.390 Sum_probs=37.7
Q ss_pred CCCeeeCcCCCCCCC-----------------CCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 66 IPSVFVCPISLEPMQ-----------------DPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 66 ~p~~~~Cpi~~~~m~-----------------dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
+...--|+||..... +=.++||.|.|-++|+++|.+.-.-.||.||++++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 344457999975422 122458999999999999998545579999998864
No 195
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.83 E-value=2.2 Score=46.50 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=90.5
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
...+.+++.+..-+.+.++----.|...++.+++ .++. ++..+..=+++. ++.++..|+.++..+-..+-
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lL---avNti~kDl~d~-N~~iR~~AlR~ls~l~~~el---- 124 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALL---AVNTIQKDLQDP-NEEIRGFALRTLSLLRVKEL---- 124 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHH---HHHHHHhhccCC-CHHHHHHHHHHHHhcChHHH----
Confidence 3445555555544555555555555666655552 1111 244555555554 67888888888875543221
Q ss_pred ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252 229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC 304 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls 304 (450)
-...++++.+.+.++++.+|..|+-++..+-+-+. ....+.|.+..+..++.+. +|.+..+|+.+|..+.
T Consensus 125 --~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 125 --LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADS-DPIVIANALASLAEID 194 (757)
T ss_pred --HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCC-CchHHHHHHHHHHHhc
Confidence 13457888888888999999999999988854332 2345667777777777665 7888889988888876
No 196
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.80 E-value=0.46 Score=38.11 Aligned_cols=92 Identities=16% Similarity=0.137 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHc
Q 041252 335 QLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS 413 (450)
Q Consensus 335 ~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s 413 (450)
..++..|...+.. +..-....+ -.+++++..+...+.+++.+|+.+|.++++...++... .=..++..|..++..
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~--~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP--YFNEIFDALCKLSAD 79 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcC
Confidence 3445555555432 222223332 47889999999999999999999999999876533211 124577777887766
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 041252 414 GCNPVLKQRSAELLKLCS 431 (450)
Q Consensus 414 ~~~~~~k~~A~~lL~~ls 431 (450)
. ++.+|..|.-+-+++.
T Consensus 80 ~-d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 80 P-DENVRSAAELLDRLLK 96 (97)
T ss_pred C-chhHHHHHHHHHHHhc
Confidence 5 7888888877777764
No 197
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.70 E-value=0.68 Score=49.67 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=95.8
Q ss_pred cchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCch
Q 041252 145 EDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSE 224 (450)
Q Consensus 145 ~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~ 224 (450)
.|+....++++....-.+.+.+.-.--.|.+-+...++. ..+++..++.=-.+. +..++..|++.+..+..+.-
T Consensus 45 ~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~-np~iR~lAlrtm~~l~v~~i 118 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDP-NPLIRALALRTMGCLRVDKI 118 (734)
T ss_pred cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCC-CHHHHHHHhhceeeEeehHH
Confidence 344555666766666555555555555566666555532 122344333333332 55677777777665443221
Q ss_pred hhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252 225 SKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC 304 (450)
Q Consensus 225 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls 304 (450)
. .-...+|...++.+++.+|..|+.....+-..+ .+.+...|++..|-.++.+. ++.++.+|+.+|..+.
T Consensus 119 ~------ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 119 T------EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDS-NPMVVANALAALSEIH 188 (734)
T ss_pred H------HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCC-CchHHHHHHHHHHHHH
Confidence 1 234778889999999999999998888884333 44567889999999999975 7899999999999997
Q ss_pred c
Q 041252 305 L 305 (450)
Q Consensus 305 ~ 305 (450)
.
T Consensus 189 e 189 (734)
T KOG1061|consen 189 E 189 (734)
T ss_pred H
Confidence 3
No 198
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.64 E-value=3.6 Score=41.65 Aligned_cols=130 Identities=18% Similarity=0.196 Sum_probs=95.1
Q ss_pred hhccC-CCchHHHHHHhcCC---CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHh-cC--CCccchhHHHHH
Q 041252 227 TNLMQ-PAKVSLLVDMLNEG---SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK-NK--RHPNGILPGLSL 299 (450)
Q Consensus 227 ~~i~~-~g~i~~Lv~lL~~~---~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~-~~--~~~~~~~~al~a 299 (450)
+.+++ ...+..|..++.+. -+.+-..|+.++..+...++..-.++.+.|+++.++..+. .+ .+.++....-.+
T Consensus 99 rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~ 178 (379)
T PF06025_consen 99 RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNV 178 (379)
T ss_pred ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 34556 55566666677654 3677788899999988777777778899999999999988 43 234445555678
Q ss_pred HHHhccChHHHHHHHhcCCHHHHHHhcCCCC-------hhHHHHHHHHHHHhcCC-hhhHHHHhc
Q 041252 300 LRSICLLNEVRSLVVSIGAVPQLVELLPSLD-------PDCLQLALCILDALSSL-PEGKLALKD 356 (450)
Q Consensus 300 L~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~-------~~~~~~al~~L~~L~~~-~e~r~~i~~ 356 (450)
|..||.+......+.+.++++.+++++.+.+ .+.....-..+..|..+ |.-|..+.+
T Consensus 179 l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 179 LSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8999999999999999999999999997642 13344444556667665 666666654
No 199
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.49 E-value=0.38 Score=39.96 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=55.7
Q ss_pred hcHHHHHHHhh-ccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhc
Q 041252 149 GRASELLGTLK-KVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNL 219 (450)
Q Consensus 149 ~~i~~Lv~~L~-~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~L 219 (450)
..+..|+..|. +.++.....|+..|..+++..+..|..+-+.|+-..+..++.+. +.+++.+|+.++..+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 35677888884 44556677799999999999998888888889888899999886 899999999988653
No 200
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.33 E-value=1.9 Score=46.63 Aligned_cols=196 Identities=15% Similarity=0.135 Sum_probs=128.9
Q ss_pred CCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHH-HHhccCCChhhHhhhhhHHHHHHHHHhcCCCccc--hhHH
Q 041252 220 TLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIE-KLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNG--ILPG 296 (450)
Q Consensus 220 s~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~-~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~--~~~a 296 (450)
+....-+...+++|+...|.++...+..+.+..+..+|. .+.-... .....++.+...+... ... .-.+
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~------~~~~v~~~~~s~~~~d--~~~~en~E~ 562 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE------RSYEVVKPLDSALHND--EKGLENFEA 562 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC------chhhhhhhhcchhhhh--HHHHHHHHH
Confidence 334455677889999999999999888999998888887 2211110 1233455555554432 122 2377
Q ss_pred HHHHHHhccC-hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHH-HHhccCCChHHHHHHHhcCChH
Q 041252 297 LSLLRSICLL-NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKL-ALKDCANTIPNTVRLLMRVSED 374 (450)
Q Consensus 297 l~aL~~Ls~~-~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~-~i~~~~g~i~~Lv~lL~~~s~~ 374 (450)
+.+|.||++. +..|..++..-+++-+-+++.+.++..+..++..+.||.-++---. .+++...+.+.....+..-.+.
T Consensus 563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~ 642 (748)
T KOG4151|consen 563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK 642 (748)
T ss_pred HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence 8899999864 4567788876666666666777889999999999999998765444 3444356788887777765566
Q ss_pred HHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHH
Q 041252 375 CTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSA 424 (450)
Q Consensus 375 ~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~ 424 (450)
....+++++..++....+.+.....-......+..+++++ ++.++....
T Consensus 643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl 691 (748)
T KOG4151|consen 643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGL 691 (748)
T ss_pred HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhh
Confidence 6666777776666655433432111233457777777777 555554443
No 201
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=0.028 Score=41.88 Aligned_cols=50 Identities=26% Similarity=0.453 Sum_probs=36.4
Q ss_pred CCCeeeCcCCCCCCCC-CeeC-CCCCcccHHHHHHHHhc--CCCCCCCcCCcCC
Q 041252 66 IPSVFVCPISLEPMQD-PVTL-CTGQTYERSNILKWFSL--GRYTCPTTMQELW 115 (450)
Q Consensus 66 ~p~~~~Cpi~~~~m~d-Pv~~-~~g~ty~r~~I~~~~~~--~~~~cP~~~~~l~ 115 (450)
.|-+-.||-|+-.=.| |.+. -|-|.|-+.||.+|+.. +...||+||+.+.
T Consensus 28 m~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 28 MPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3444567777655444 7665 49999999999999974 2457999998754
No 202
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.09 E-value=7.8 Score=36.39 Aligned_cols=139 Identities=22% Similarity=0.297 Sum_probs=86.5
Q ss_pred hHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh
Q 041252 193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV 271 (450)
Q Consensus 193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~ 271 (450)
++.|+.-+....+...+...+.+|..++.++ .+. +-.+..|+.+.+.+..+.+.-+...+..+-..++. .+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r---~f 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR---HF 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch---HH
Confidence 3445554555557788899999999998877 332 33466666666666777666666677766544431 11
Q ss_pred hhhhHHHHHHHHH--h-----cCCC--ccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhc-CCCChhHHHHHHHHH
Q 041252 272 SSHRLLIGLMRLV--K-----NKRH--PNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELL-PSLDPDCLQLALCIL 341 (450)
Q Consensus 272 ~~~g~l~~Lv~lL--~-----~~~~--~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL-~~~~~~~~~~al~~L 341 (450)
+.+..++..+ + .+.+ .......+.++..+|...+++ -...++.+..+| .+.++..+..++.+|
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4455554441 1 1111 112234455777888554442 223567788888 777889999999999
Q ss_pred HHhcC
Q 041252 342 DALSS 346 (450)
Q Consensus 342 ~~L~~ 346 (450)
..||.
T Consensus 147 ~~Lc~ 151 (234)
T PF12530_consen 147 APLCE 151 (234)
T ss_pred HHHHH
Confidence 99993
No 203
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=15 Score=39.60 Aligned_cols=69 Identities=22% Similarity=0.246 Sum_probs=48.2
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh-cCChHHHHHHHHHHHHhcccC
Q 041252 319 VPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM-RVSEDCTQYALSILWSICKIA 390 (450)
Q Consensus 319 v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~ 390 (450)
+..|-.+|.+....++-.|+..+..|+++.....++..| ...++..|. ..+..+++.|+..|..+|..+
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h---~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH---QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH---HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 344555555555566666666677777766666666653 667777777 446788999999999998865
No 204
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.073 Score=52.52 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=39.4
Q ss_pred CCeeeCcCCCCCCCCCe-------e-CCCCCcccHHHHHHHHhcC------CCCCCCcCCcC
Q 041252 67 PSVFVCPISLEPMQDPV-------T-LCTGQTYERSNILKWFSLG------RYTCPTTMQEL 114 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv-------~-~~~g~ty~r~~I~~~~~~~------~~~cP~~~~~l 114 (450)
-.+..|-||++.-.++. + ..|.|+||..||.+|-... ...||.|+...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 46899999999999887 3 4599999999999997532 35799998764
No 205
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=6.4 Score=44.10 Aligned_cols=235 Identities=13% Similarity=0.096 Sum_probs=127.1
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
..++.|+..|++.+..+|-.|++-+..++...+ ..+++. +|...++++....++..-..|+-+|+.|+.. .
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad~-vi~svid~~~p~e~~~aWHgacLaLAELA~r-----G 411 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELADQ-VIGSVIDLFNPAEDDSAWHGACLALAELALR-----G 411 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHHH-HHHHHHHhcCcCCchhHHHHHHHHHHHHHhc-----C
Confidence 446677777888888899999999999998776 223322 3555666665543456666788888887742 2
Q ss_pred ccC----CCchHHHHHHhc--------CCCHHHHHHHHHHHHHHhccCCCh--hhHhhhhhHHHHHH-HHHhcCCCccch
Q 041252 229 LMQ----PAKVSLLVDMLN--------EGSVETKINCTRLIEKLMEEKDFR--PEIVSSHRLLIGLM-RLVKNKRHPNGI 293 (450)
Q Consensus 229 i~~----~g~i~~Lv~lL~--------~~~~~~~~~aa~~L~~La~~~~~~--~~~~~~~g~l~~Lv-~lL~~~~~~~~~ 293 (450)
+.- ...++.++.-|. +....+|..|+-++|.++...+.. +-+. ..+...|+ ..+-+. +.+.+
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l--~~L~s~LL~~AlFDr-evncR 488 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL--QSLASALLIVALFDR-EVNCR 488 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH--HHHHHHHHHHHhcCc-hhhHh
Confidence 222 244666666553 123578999999999997554322 1111 11222222 222333 56677
Q ss_pred hHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCC---hhHHHHHHHHHHH-hcCChhhHHHHhccCCChHHHHHHHh
Q 041252 294 LPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLD---PDCLQLALCILDA-LSSLPEGKLALKDCANTIPNTVRLLM 369 (450)
Q Consensus 294 ~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~---~~~~~~al~~L~~-L~~~~e~r~~i~~~~g~i~~Lv~lL~ 369 (450)
.+|..||....+...| +|.=++++..-| ...+.++-..|.. ++..+..+.-+.++ .+.+.+.
T Consensus 489 RAAsAAlqE~VGR~~n---------~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~ 554 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGN---------FPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVC 554 (1133)
T ss_pred HHHHHHHHHHhccCCC---------CCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccc
Confidence 8888887765543222 222222222211 1222222222221 22223333333331 1112244
Q ss_pred cCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcC
Q 041252 370 RVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSG 414 (450)
Q Consensus 370 ~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~ 414 (450)
+.+...++.|..+|..|+...++. ...+.+++|+....++
T Consensus 555 HWd~~irelaa~aL~~Ls~~~pk~-----~a~~~L~~lld~~ls~ 594 (1133)
T KOG1943|consen 555 HWDVKIRELAAYALHKLSLTEPKY-----LADYVLPPLLDSTLSK 594 (1133)
T ss_pred cccHHHHHHHHHHHHHHHHhhHHh-----hcccchhhhhhhhcCC
Confidence 456778888888887776655422 2345566666555443
No 206
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.70 E-value=0.19 Score=41.79 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252 275 RLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS 345 (450)
Q Consensus 275 g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~ 345 (450)
.++..|+++|....++.+..-|+.=|..++ .++..|..+-+.|+=..++++|.+.+++++..|+.++..|-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 468899999965445666666767777777 45666766667899999999999999999999999987664
No 207
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.67 E-value=12 Score=38.47 Aligned_cols=175 Identities=11% Similarity=0.063 Sum_probs=105.4
Q ss_pred hhhHHHHHHHHHhcCCCc----hhhhhccCCCchHHHHHHhcCCC-------HHHHHHHHHHHHHHhccCCC--hhhHhh
Q 041252 206 HAVGSEAVGVLVNLTLDS----ESKTNLMQPAKVSLLVDMLNEGS-------VETKINCTRLIEKLMEEKDF--RPEIVS 272 (450)
Q Consensus 206 ~~v~~~Al~~L~~Ls~~~----~~k~~i~~~g~i~~Lv~lL~~~~-------~~~~~~aa~~L~~La~~~~~--~~~~~~ 272 (450)
++-+-.|+-.+..+...+ .+|+.+.++-+.+.+-++|.+++ .-.+.-+..+|.-.++..+. ..++
T Consensus 25 D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~-- 102 (698)
T KOG2611|consen 25 DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEM-- 102 (698)
T ss_pred hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHH--
Confidence 344444444444454433 46777888888889888886431 22355566667767665442 2223
Q ss_pred hhhHHHHHHHHHhcCCCcc------chhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCC-hhHHHHHHHHHHHhc
Q 041252 273 SHRLLIGLMRLVKNKRHPN------GILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLD-PDCLQLALCILDALS 345 (450)
Q Consensus 273 ~~g~l~~Lv~lL~~~~~~~------~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~-~~~~~~al~~L~~L~ 345 (450)
...||.|..++..+.+++ ....+..+|+.+++++.....++..|+++.+-++-.-.+ .--.+.++.++..+.
T Consensus 103 -v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~ 181 (698)
T KOG2611|consen 103 -VSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLV 181 (698)
T ss_pred -HHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence 245888999888766666 778999999999999999999999999999987753222 122344455554443
Q ss_pred CC----hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 041252 346 SL----PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI 386 (450)
Q Consensus 346 ~~----~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L 386 (450)
.. ++.-..+.. .|..+.+-+.......+-..+..|..+
T Consensus 182 ~~~~cw~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 182 SKLDCWSETIERFLA---LIAAVARDFAVLHNALKFELCHLLSAV 223 (698)
T ss_pred HhcccCcCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 32 233333322 133333333333344555566777644
No 208
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.67 E-value=1.7 Score=38.95 Aligned_cols=110 Identities=15% Similarity=0.225 Sum_probs=75.4
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHH-HHHHHHhhCChHHHHhhhCCC--------CChhhHHHHHHHHHhcC
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHAS-ARKTMVDEGGVALISSLLGPF--------TSHAVGSEAVGVLVNLT 220 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~-~r~~i~~~G~i~~Lv~lL~~~--------~~~~v~~~Al~~L~~Ls 220 (450)
.....+..|.+..... ..+..|+..-...+. --+.+.+.||+..|+.+|... .+.......+..|..+.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3455677776643322 455566554444432 234566889999999988431 13357778899999988
Q ss_pred CCchhhhhcc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 041252 221 LDSESKTNLM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLM 261 (450)
Q Consensus 221 ~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La 261 (450)
.+......+. .++.+..|+..|.+.+..++..+..+|..++
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8887776655 5899999999999999999999999888764
No 209
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.66 E-value=16 Score=41.60 Aligned_cols=218 Identities=14% Similarity=0.119 Sum_probs=123.6
Q ss_pred ChhhHHHHHHHHHhcCCCchhhhhccC--CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-ChhhHhhhhhHHHHHH
Q 041252 205 SHAVGSEAVGVLVNLTLDSESKTNLMQ--PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD-FRPEIVSSHRLLIGLM 281 (450)
Q Consensus 205 ~~~v~~~Al~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~-~~~~~~~~~g~l~~Lv 281 (450)
+..+|..+-.+|..++..++......+ ......|.+-+++.+...+.....+|..|-...+ ..... . ...|+.++
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~-i-~k~I~EvI 744 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL-I-PKLIPEVI 744 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH-H-HHHHHHHH
Confidence 678999999999998776433322211 1233444444555566667777777766643322 11111 1 12233333
Q ss_pred HHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcC------CHHHHHHhcCCC--ChhHHHHH--HHHHHHhcCChh--
Q 041252 282 RLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIG------AVPQLVELLPSL--DPDCLQLA--LCILDALSSLPE-- 349 (450)
Q Consensus 282 ~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G------~v~~Lv~lL~~~--~~~~~~~a--l~~L~~L~~~~e-- 349 (450)
=.++. .+...++.+..+|..|+. .....+.| .|...+.++..+ +......+ +-++..+.....
T Consensus 745 L~~Ke-~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 745 LSLKE-VNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred Hhccc-ccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 33343 356778889999988873 11222223 444555555443 22222222 333333322111
Q ss_pred hHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041252 350 GKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKL 429 (450)
Q Consensus 350 ~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ 429 (450)
.-.... .+.|..+...|.+.+..+...|++.+..++..-|+.+... ...-+++.++.+++.+ ....|.+..-+|..
T Consensus 820 ld~~~l--~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~-~~~~LL~sll~ls~d~-k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 820 LDDETL--EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP-HLEELLPSLLALSHDH-KIKVRKKVRLLLEK 895 (1176)
T ss_pred ccHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh-hHHHHHHHHHHHHHhh-hHHHHHHHHHHHHH
Confidence 111111 2345566667777889999999999999999888654322 2334788888888776 57788888888876
Q ss_pred HHhh
Q 041252 430 CSLN 433 (450)
Q Consensus 430 ls~~ 433 (450)
|-.-
T Consensus 896 Lirk 899 (1176)
T KOG1248|consen 896 LIRK 899 (1176)
T ss_pred HHHH
Confidence 5443
No 210
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.65 E-value=1.1 Score=39.27 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=94.6
Q ss_pred CchHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHH
Q 041252 233 AKVSLLVDMLNE--GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEV 309 (450)
Q Consensus 233 g~i~~Lv~lL~~--~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~ 309 (450)
..+..++..|.. ...++|..+.-++..+. +..++.+ ...+...+..+-.+.+.+....+..+|..|= ..++.
T Consensus 3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~--~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv 77 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEF--KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDV 77 (157)
T ss_dssp CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHH--HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHH
Confidence 345566666664 57788888888887773 1111111 1122222222222223445666777777665 56677
Q ss_pred HHHHH-hcCCHHHHHHhcC--CCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC-ChH-HHHHHHHHHH
Q 041252 310 RSLVV-SIGAVPQLVELLP--SLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV-SED-CTQYALSILW 384 (450)
Q Consensus 310 ~~~iv-~~G~v~~Lv~lL~--~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~-s~~-~~e~A~~~L~ 384 (450)
...+. ..|.++.++.++. +.+...+..++.+|..-|.....|..+.+ .+++.|-++.... ++. ++-.|+-+|.
T Consensus 78 ~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 78 GSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 77777 5799999999998 77889999999999988887777777776 7899999998544 344 5666665554
No 211
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.41 E-value=5.3 Score=44.23 Aligned_cols=266 Identities=14% Similarity=0.077 Sum_probs=140.0
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-CchhhhhccC
Q 041252 153 ELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DSESKTNLMQ 231 (450)
Q Consensus 153 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~~~k~~i~~ 231 (450)
.|++.+.+.+.+.|.-|...|..--..+.-+-+.=-+...+..|+++|... +.+++..|+..|.-|+. -.+.+-
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~-ngEVQnlAVKClg~lvsKvke~~l---- 83 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDK-NGEVQNLAVKCLGPLVSKVKEDQL---- 83 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHhhchHHHH----
Confidence 577778888888888888887654432211101111234578899999875 78999999999987762 111110
Q ss_pred CCchHHHHHHhcCCCHHHHHHHHHHHHH-HhccCCChhhHhhhh----hHHHHHHHHHhc-CCCccchhHHHHHHHHhcc
Q 041252 232 PAKVSLLVDMLNEGSVETKINCTRLIEK-LMEEKDFRPEIVSSH----RLLIGLMRLVKN-KRHPNGILPGLSLLRSICL 305 (450)
Q Consensus 232 ~g~i~~Lv~lL~~~~~~~~~~aa~~L~~-La~~~~~~~~~~~~~----g~l~~Lv~lL~~-~~~~~~~~~al~aL~~Ls~ 305 (450)
.-.+..|..-+-++-.+.|.-+.-.|.. .+.-.+.... .... .+.+.|..-+.. +....++..++..|..+-+
T Consensus 84 e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~-~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 84 ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSS-FLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccc-ccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 1112333333334434444333333322 2221111000 1112 233333333322 1111233344433332211
Q ss_pred ChHHHHHH--HhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhc-CChHHHHHHHHH
Q 041252 306 LNEVRSLV--VSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMR-VSEDCTQYALSI 382 (450)
Q Consensus 306 ~~~~~~~i--v~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~-~s~~~~e~A~~~ 382 (450)
. .-..+ ...+....++.-|.+....++..|+.+|..|+.. -++....+ .|..|++-|.. .++...+--+.+
T Consensus 163 r--~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~-~~~~ly~~---li~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 163 R--FGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASS-CNRDLYVE---LIEHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred h--hcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHh-cCHHHHHH---HHHHHHhccCCCCchHHHHHHHHH
Confidence 1 00011 2345566777777777889999999999999863 34444432 45566666544 345556666677
Q ss_pred HHHhcccCchhHHHHHHhcChHHHHHHHH---HcCCCHHHHHHHHHHHHHHHhh
Q 041252 383 LWSICKIAPEECSSAAVDAGLAAKLFLVI---QSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 383 L~~L~~~~~~~~~~~~~~~G~i~~L~~ll---~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
|..+|..+..+ .--.-...+|.+.+.. +.+ +++.|+.....+..+=..
T Consensus 237 l~~i~r~ag~r--~~~h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~r 287 (1233)
T KOG1824|consen 237 LAAICRQAGHR--FGSHLDKIVPLVADYCNKIEED-DDELREYCLQALESFLRR 287 (1233)
T ss_pred HHHHHHHhcch--hhcccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHh
Confidence 77777755321 1111234556666666 444 678999988877664433
No 212
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.36 E-value=0.027 Score=60.78 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=38.7
Q ss_pred eeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcC-CCCCCCcCCcCCC
Q 041252 70 FVCPISLEPMQDPVTLCTGQTYERSNILKWFSLG-RYTCPTTMQELWD 116 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~ 116 (450)
+.|+||.+ ..+|+++.|||.||++|+.+.+... ...||.|+..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 8888899999999999999987743 3459999866544
No 213
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=0.11 Score=50.99 Aligned_cols=53 Identities=19% Similarity=0.417 Sum_probs=36.8
Q ss_pred CCeeeCcCCCCCCCCCe----eCCCCCcccHHHHHHHHhcC--CCCCCCcCCcCCCCCC
Q 041252 67 PSVFVCPISLEPMQDPV----TLCTGQTYERSNILKWFSLG--RYTCPTTMQELWDDSV 119 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv----~~~~g~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~~l 119 (450)
|-.-.|.||-+.+-.-- +-.|||+|.-.|+.+||+.- +.+||.|+-.++...+
T Consensus 2 pi~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~ 60 (465)
T KOG0827|consen 2 PIMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHV 60 (465)
T ss_pred CccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceee
Confidence 44567999966443211 34599999999999999953 2579999855554433
No 214
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=91.82 E-value=0.052 Score=40.74 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=22.4
Q ss_pred eeeCcCCCCCCC-C---CeeC----CCCCcccHHHHHHHHhc--CC--------CCCCCcCCcCC
Q 041252 69 VFVCPISLEPMQ-D---PVTL----CTGQTYERSNILKWFSL--GR--------YTCPTTMQELW 115 (450)
Q Consensus 69 ~~~Cpi~~~~m~-d---Pv~~----~~g~ty~r~~I~~~~~~--~~--------~~cP~~~~~l~ 115 (450)
+..|+||..... + |++. .|+++|=..|+.+||.. +. ..||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 356999998654 2 5543 48999999999999873 11 25999988753
No 215
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.79 E-value=0.84 Score=36.59 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=57.2
Q ss_pred hhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhcc-CCChHHHHHHHhcC
Q 041252 293 ILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDC-ANTIPNTVRLLMRV 371 (450)
Q Consensus 293 ~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~-~g~i~~Lv~lL~~~ 371 (450)
+..++.+|...+..-.....-.-.-.+++++..+.+.+..++..|+.+|.+++..-. ..+..+ ......|.+++...
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC
Confidence 445566666665322111111123468899999999999999999999999986532 222221 24566777777766
Q ss_pred ChHHHHHHHHHHHHh
Q 041252 372 SEDCTQYALSILWSI 386 (450)
Q Consensus 372 s~~~~e~A~~~L~~L 386 (450)
++.++..| ..|-++
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 67766544 555443
No 216
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.62 E-value=15 Score=39.88 Aligned_cols=54 Identities=13% Similarity=0.025 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252 372 SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL 432 (450)
Q Consensus 372 s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~ 432 (450)
+..++..|+.+|..+...++ .....+...|...+.. .+...|+.|...|+.+..
T Consensus 479 n~ivRaaAv~alaKfg~~~~------~l~~sI~vllkRc~~D-~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 479 NAIVRAAAVSALAKFGAQDV------VLLPSILVLLKRCLND-SDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhHHHHHHHHHHHhcCCC------CccccHHHHHHHHhcC-chHHHHHHHHHHHHHhhh
Confidence 45677788888888874442 1223343344444444 378899999999999873
No 217
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.62 E-value=12 Score=40.43 Aligned_cols=184 Identities=15% Similarity=0.119 Sum_probs=94.3
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-------
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL------- 221 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~------- 221 (450)
+..+.+...|......+|++|.-++..+-+... .+. -.+-+.+-.+|....+....++|.-.|.....
T Consensus 134 pl~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl 208 (948)
T KOG1058|consen 134 PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLI-PDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYL 208 (948)
T ss_pred hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhc-CChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHH
Confidence 445566667777788899999888887755321 111 11223344566555566666666544443210
Q ss_pred ----------Cchhhhhc---------c----CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHH
Q 041252 222 ----------DSESKTNL---------M----QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLI 278 (450)
Q Consensus 222 ----------~~~~k~~i---------~----~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~ 278 (450)
++.....| . +...|..+..+|.+.++.++-.|+..|..|+.+....+. + ..
T Consensus 209 ~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~---A---a~ 282 (948)
T KOG1058|consen 209 LSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA---A---AS 282 (948)
T ss_pred HhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH---H---HH
Confidence 01111000 0 122355555566655666666666666655443322111 1 12
Q ss_pred HHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC
Q 041252 279 GLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL 347 (450)
Q Consensus 279 ~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 347 (450)
.+++++.+..+-+++.-.+--|..+.. .++..+ .|.+--++++|++++.+++..++.+...|+++
T Consensus 283 ~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 283 TYIDLLVKESDNNVKLIVLDRLSELKA--LHEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred HHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 233333332233344333333444431 111111 24455677888889999999999988888764
No 218
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.61 E-value=5.7 Score=41.60 Aligned_cols=220 Identities=13% Similarity=0.080 Sum_probs=134.3
Q ss_pred chHHHHHHHHHHHHHHHHcHHHHHHHHhhCC----hHHHHhhhCCCCChhhHHHHHHHHHhcC-CCchhhhhccCCCchH
Q 041252 162 KGQARVQALKELHQIAAAHASARKTMVDEGG----VALISSLLGPFTSHAVGSEAVGVLVNLT-LDSESKTNLMQPAKVS 236 (450)
Q Consensus 162 ~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~----i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls-~~~~~k~~i~~~g~i~ 236 (450)
+..+|..|+++|..-+.. .|..+...+- ....++.-+.. +.+++..|.+.|..+- ..-.-....++.....
T Consensus 191 ~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceatq~~-d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~a 266 (858)
T COG5215 191 TSAVRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEATQGN-DEELQHAAFGCLNKIMMLYYKFMQSYMENALAA 266 (858)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888899998873321 1222222221 23334444443 7889999988887743 3334444666666677
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccC-CChh-------------hHh--hhhhHHHHHHHHHhc------CCCccchh
Q 041252 237 LLVDMLNEGSVETKINCTRLIEKLMEEK-DFRP-------------EIV--SSHRLLIGLMRLVKN------KRHPNGIL 294 (450)
Q Consensus 237 ~Lv~lL~~~~~~~~~~aa~~L~~La~~~-~~~~-------------~~~--~~~g~l~~Lv~lL~~------~~~~~~~~ 294 (450)
.....+++.+.++...|...-..+++.. +..- ... ....++|.|+++|.. +.+.+...
T Consensus 267 lt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sm 346 (858)
T COG5215 267 LTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSM 346 (858)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhh
Confidence 7788889999999888877654454221 1100 001 123578999999975 12345566
Q ss_pred HHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC--hhhHHHHhccCCChHHHHHHHhcCC
Q 041252 295 PGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL--PEGKLALKDCANTIPNTVRLLMRVS 372 (450)
Q Consensus 295 ~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e~r~~i~~~~g~i~~Lv~lL~~~s 372 (450)
+|..+|.-.+....+ .|++. ++..+=.=+++.+-.-++.|+.++...-.. ...+..++. .++|.+...+...+
T Consensus 347 aA~sCLqlfaq~~gd--~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~--qalp~i~n~m~D~~ 421 (858)
T COG5215 347 AASSCLQLFAQLKGD--KIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP--QALPGIENEMSDSC 421 (858)
T ss_pred hHHHHHHHHHHHhhh--HhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH--hhhHHHHHhcccce
Confidence 666666655432222 23322 222222234666777888999999887755 345556664 68888888888666
Q ss_pred hHHHHHHHHHHHHhcccC
Q 041252 373 EDCTQYALSILWSICKIA 390 (450)
Q Consensus 373 ~~~~e~A~~~L~~L~~~~ 390 (450)
--+++.+++++..++.+-
T Consensus 422 l~vk~ttAwc~g~iad~v 439 (858)
T COG5215 422 LWVKSTTAWCFGAIADHV 439 (858)
T ss_pred eehhhHHHHHHHHHHHHH
Confidence 778888888888887643
No 219
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=91.55 E-value=0.082 Score=51.91 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=40.0
Q ss_pred eCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc-CCCCCCCcCCcCCCC
Q 041252 71 VCPISLEPMQDPVTLCTGQTYERSNILKWFSL-GRYTCPTTMQELWDD 117 (450)
Q Consensus 71 ~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~-~~~~cP~~~~~l~~~ 117 (450)
.|-||-+-=+|=-+-+|||-.|-.|+..|... +..+||.||..+.-+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 79999998778777789999999999999864 478899999876543
No 220
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=0.21 Score=48.74 Aligned_cols=63 Identities=25% Similarity=0.255 Sum_probs=50.1
Q ss_pred eeCcCCCCCCC------CCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC--CC---CCCcchHHHHHHHHHH
Q 041252 70 FVCPISLEPMQ------DPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL--WD---DSVTPNKTLYHLIHTW 132 (450)
Q Consensus 70 ~~Cpi~~~~m~------dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l--~~---~~l~~n~~L~~~I~~w 132 (450)
+.|-||.+.++ -|-++.||||+|..|+..-+..+...||.||.+. .. ..+..|.++-.+|+..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 46888887776 3778889999999999998887777899999873 32 4567788888877665
No 221
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.11 E-value=0.14 Score=49.32 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=35.4
Q ss_pred CeeeCcCCCCCCC--CCee--CCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCC
Q 041252 68 SVFVCPISLEPMQ--DPVT--LCTGQTYERSNILKWFSLGRYTCPTTMQELWDDS 118 (450)
Q Consensus 68 ~~~~Cpi~~~~m~--dPv~--~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 118 (450)
+++ ||+|.+.|. |--- -+||+..||-|...--+.-+..||.||..++++.
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 345 999999987 3222 2589998888865544444678999998776643
No 222
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.84 E-value=0.18 Score=49.57 Aligned_cols=50 Identities=26% Similarity=0.519 Sum_probs=38.9
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCC
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSV 119 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 119 (450)
...|.++...|.|||-+.+|-.|+-..|--|+.. +.+=|.+++++...+|
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dL 89 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDL 89 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccc
Confidence 3579999999999999999999999999999975 3444555555444333
No 223
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=90.61 E-value=0.045 Score=58.06 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=33.6
Q ss_pred eeCcCCCCCCCCCee---CCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 70 FVCPISLEPMQDPVT---LCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~---~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
-.||+|..-+.|-.+ ..|+|-||.+||..|-.. ..+||.|+..|..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 357777666666553 358888888888888774 6789999887654
No 224
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.58 E-value=6.8 Score=35.02 Aligned_cols=111 Identities=15% Similarity=0.196 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCH-HHHHH
Q 041252 246 SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAV-PQLVE 324 (450)
Q Consensus 246 ~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v-~~Lv~ 324 (450)
++.+|.++..++..|+...+.. -...++.+...|+++ ++.+++.|+.+|..|-..+-.|.+ |-+ ..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~-----ve~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL-----VEPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKVK----GQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH-----HHhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHH
Confidence 4678999999999997544322 134678999999987 799999999999999765433321 323 67778
Q ss_pred hcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhc
Q 041252 325 LLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMR 370 (450)
Q Consensus 325 lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~ 370 (450)
++.+.+++++..|...+..+.... +...+.. .++.++..+..
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~~-~~~~i~~---~~~e~i~~l~~ 112 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKKR-NPNIIYN---NFPELISSLNN 112 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhc-cchHHHH---HHHHHHHHHhC
Confidence 888899999999999999998642 2333332 34455555444
No 225
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.47 E-value=7.1 Score=44.21 Aligned_cols=222 Identities=13% Similarity=0.089 Sum_probs=121.2
Q ss_pred cchHHHHHHHHHHHHHHHHcHHHHHHHHhh--CChHHHHhhhCCCCChhhHHHHHHHHHhcCC-Cc-hhhhhccCCCchH
Q 041252 161 VKGQARVQALKELHQIAAAHASARKTMVDE--GGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DS-ESKTNLMQPAKVS 236 (450)
Q Consensus 161 ~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~--G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~-~~k~~i~~~g~i~ 236 (450)
.+...|.++-+.|..++.. +.....+.+. .....|..-.++. +..++..++.+|..|-. ++ +....+ ...|+
T Consensus 666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP 741 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 3566888888888888754 2222222111 0112233333332 34556666655554322 11 222222 33455
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhc----cCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHH
Q 041252 237 LLVDMLNEGSVETKINCTRLIEKLME----EKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSL 312 (450)
Q Consensus 237 ~Lv~lL~~~~~~~~~~aa~~L~~La~----~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~ 312 (450)
-++-.++..+...|++|-.+|..+.. .++.... ....+...+..+..+.--+.....+..|..+..--.....
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~---~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP---ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc---hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 55555577799999999999988862 1111000 1123444444444331011112222213333322222233
Q ss_pred HHhcCCHHHHHH----hcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhc
Q 041252 313 VVSIGAVPQLVE----LLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSIC 387 (450)
Q Consensus 313 iv~~G~v~~Lv~----lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 387 (450)
+.+.+.++.+++ .|.+.++++...|++.+..++.. |+....-.. +-.++.+..++..+...++...-..|-.++
T Consensus 819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 444444444444 45778999999999999999866 666555444 457889999888888888877777777776
Q ss_pred ccC
Q 041252 388 KIA 390 (450)
Q Consensus 388 ~~~ 390 (450)
...
T Consensus 898 rkf 900 (1176)
T KOG1248|consen 898 RKF 900 (1176)
T ss_pred HHh
Confidence 644
No 226
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=0.052 Score=37.72 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=34.1
Q ss_pred eCcCCCCCCCCCeeCCCCCc-ccHHHHHHHHhcCCCCCCCcCCcC
Q 041252 71 VCPISLEPMQDPVTLCTGQT-YERSNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 71 ~Cpi~~~~m~dPv~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l 114 (450)
.|.||.+--.|.|+-.|||. .|..|=.+.+..++..||.||.++
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 49999887778888889996 577775555554688999998764
No 227
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=90.35 E-value=3.4 Score=39.54 Aligned_cols=174 Identities=16% Similarity=0.176 Sum_probs=107.6
Q ss_pred hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCC--chHHHHHHhcC----CCHHHHHHHHHHHHHHhccCCC
Q 041252 193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPA--KVSLLVDMLNE----GSVETKINCTRLIEKLMEEKDF 266 (450)
Q Consensus 193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g--~i~~Lv~lL~~----~~~~~~~~aa~~L~~La~~~~~ 266 (450)
...+..++..+ ..+-+-.++.+++-+..++..-..+...+ ....+..++.. .++..+.-+.+++.|+-.....
T Consensus 65 ~~~~~~~~~~W-p~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~ 143 (268)
T PF08324_consen 65 LILLLKILLSW-PPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG 143 (268)
T ss_dssp HHHHHHHHCCS--CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHhC-CCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence 34556666666 45667888999998888876655554432 34455555432 4678888899999999777777
Q ss_pred hhhHhhhhh-HHHHHHHHHhcCC---CccchhHHHHHHHHhccChH-HH-HHHHhcCCHHHHHHhc-CC-CChhHHHHHH
Q 041252 267 RPEIVSSHR-LLIGLMRLVKNKR---HPNGILPGLSLLRSICLLNE-VR-SLVVSIGAVPQLVELL-PS-LDPDCLQLAL 338 (450)
Q Consensus 267 ~~~~~~~~g-~l~~Lv~lL~~~~---~~~~~~~al~aL~~Ls~~~~-~~-~~iv~~G~v~~Lv~lL-~~-~~~~~~~~al 338 (450)
+..+....+ .+...+..+.... +.+++.+++..+.|++..-. .+ ..=.....+..+++.+ .. .+++..-.++
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 766665555 3333333322221 46678889999999983221 11 1111122345666644 22 5899999999
Q ss_pred HHHHHhcCChhhHHHHhccCCChHHHHHHH
Q 041252 339 CILDALSSLPEGKLALKDCANTIPNTVRLL 368 (450)
Q Consensus 339 ~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL 368 (450)
-+|.+|...+........ .-++...+...
T Consensus 224 vAlGtL~~~~~~~~~~~~-~l~~~~~~~~~ 252 (268)
T PF08324_consen 224 VALGTLLSSSDSAKQLAK-SLDVKSVLSKK 252 (268)
T ss_dssp HHHHHHHCCSHHHHHHCC-CCTHHHHHHHH
T ss_pred HHHHHHhccChhHHHHHH-HcChHHHHHHH
Confidence 999999987777666665 33455444443
No 228
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=90.26 E-value=20 Score=35.26 Aligned_cols=191 Identities=17% Similarity=0.168 Sum_probs=107.3
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh--hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC---hHH
Q 041252 235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV--SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL---NEV 309 (450)
Q Consensus 235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~--~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~---~~~ 309 (450)
+.-.+..+...+...|+.+...|.++...... ...+ ...-++..+.+.++.+. .+-+..|+.++.-++.. ...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCcc
Confidence 44455556667789999998888877544432 2333 22346777888887763 34455566666666633 234
Q ss_pred HHHHHhcCCHHHHHHhcCCCC--hhHHHHHHHHHHHhc---CC-hhhHHHHhccCCChHHHHHH--Hhc----------C
Q 041252 310 RSLVVSIGAVPQLVELLPSLD--PDCLQLALCILDALS---SL-PEGKLALKDCANTIPNTVRL--LMR----------V 371 (450)
Q Consensus 310 ~~~iv~~G~v~~Lv~lL~~~~--~~~~~~al~~L~~L~---~~-~e~r~~i~~~~g~i~~Lv~l--L~~----------~ 371 (450)
...+.+ ...|.|...+.+++ ..++..++.+|..++ .. ++.-....+ .+..+... +.. .
T Consensus 123 ~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~---~le~if~~~~~~~~~~~~~~~~~~ 198 (309)
T PF05004_consen 123 SEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME---SLESIFLLSILKSDGNAPVVAAED 198 (309)
T ss_pred HHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH---HHHHHHHHHhcCcCCCcccccCCC
Confidence 444444 36778888887654 345455555555543 22 222221111 12211111 111 1
Q ss_pred ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 372 SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 372 s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
++.+.-.|+.+-.-|...-+........ ...++.|..+|++. +..+|-+|-+.|.++-..
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYEL 258 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 2345555665544444333332222222 34679999999987 788999999999887554
No 229
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=90.23 E-value=13 Score=36.38 Aligned_cols=219 Identities=15% Similarity=0.192 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHcHHHHHHHHhhC-ChHHHHhhhCCCC-ChhhHHHHHHHHHhcCCCchhhhhccC-CCchHHHHHH
Q 041252 165 ARVQALKELHQIAAAHASARKTMVDEG-GVALISSLLGPFT-SHAVGSEAVGVLVNLTLDSESKTNLMQ-PAKVSLLVDM 241 (450)
Q Consensus 165 ~~~~Al~~L~~l~~~~~~~r~~i~~~G-~i~~Lv~lL~~~~-~~~v~~~Al~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~l 241 (450)
.+.-|+.+|.++... ++.|+.+-..+ .-..++.+++... +...|.+.+-+++.|+.+++.-+.+-+ -.-+..|+.+
T Consensus 165 Trlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~i 243 (432)
T COG5231 165 TRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAI 243 (432)
T ss_pred HHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 466688888888753 55666654443 3345667776432 467889999999999988766543332 3456677777
Q ss_pred hcCC-CHHHHHHHHHHHHHHhccCCChhhHhhhh---hHHHHHHHHHhc-CCCccchhHHHHHHH--------Hhc----
Q 041252 242 LNEG-SVETKINCTRLIEKLMEEKDFRPEIVSSH---RLLIGLMRLVKN-KRHPNGILPGLSLLR--------SIC---- 304 (450)
Q Consensus 242 L~~~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~---g~l~~Lv~lL~~-~~~~~~~~~al~aL~--------~Ls---- 304 (450)
.++. -..+-..+++++.++.+..+ +..+.+. |-+.+-+++|.. +.+.+-...-..-+. .||
T Consensus 244 Vk~~~keKV~Rlc~~Iv~n~~dK~p--K~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~ 321 (432)
T COG5231 244 VKERAKEKVLRLCCGIVANVLDKSP--KGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc--cchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 7654 34556677888888875221 1122222 212233344432 222111111000000 011
Q ss_pred --------------------cChHHHHHHHh--cCCHHHHHHhcCCCChh-HHHHHHHHHHHhcC-ChhhHHHHhccCCC
Q 041252 305 --------------------LLNEVRSLVVS--IGAVPQLVELLPSLDPD-CLQLALCILDALSS-LPEGKLALKDCANT 360 (450)
Q Consensus 305 --------------------~~~~~~~~iv~--~G~v~~Lv~lL~~~~~~-~~~~al~~L~~L~~-~~e~r~~i~~~~g~ 360 (450)
.+..|-..+.+ ...+..|.++|++.++. ...-|+.-+..+.. .||++..+.. -|+
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K-yg~ 400 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSK-YGV 400 (432)
T ss_pred HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHH-hhh
Confidence 11224444443 34778899999776554 45556666666664 4999999988 899
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhc
Q 041252 361 IPNTVRLLMRVSEDCTQYALSILWSIC 387 (450)
Q Consensus 361 i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 387 (450)
=+.++.++.+.+++++-+|+.++..+.
T Consensus 401 k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 401 KEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999999999999999999999887653
No 230
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=89.97 E-value=0.36 Score=36.33 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=22.4
Q ss_pred eeCcCCCCCCC-----CCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 70 FVCPISLEPMQ-----DPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 70 ~~Cpi~~~~m~-----dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
-+|.||++-.- +|.+++ |++-.||.|.+-=.+.|+..||.|+.++..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 46999986443 576764 899999999998888899999999977643
No 231
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=89.88 E-value=22 Score=35.75 Aligned_cols=234 Identities=19% Similarity=0.113 Sum_probs=122.6
Q ss_pred hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCChhhHh
Q 041252 193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLN-EGSVETKINCTRLIEKLMEEKDFRPEIV 271 (450)
Q Consensus 193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~aa~~L~~La~~~~~~~~~~ 271 (450)
|..++.=|++..+..++..++--|+.-..+++-+..+...|.+..+++.+. .++...-..++.++..+...+.......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 455566566544667888888888888889999999999999999999994 3344355555445544433333333344
Q ss_pred hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhc---C------CCChhHHHHHHHHHH
Q 041252 272 SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELL---P------SLDPDCLQLALCILD 342 (450)
Q Consensus 272 ~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL---~------~~~~~~~~~al~~L~ 342 (450)
...+.+..+++++.-..........- .....+-.++.+ +.+......+ . .....-+..|+.+|.
T Consensus 103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le 175 (361)
T PF07814_consen 103 LDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLALE 175 (361)
T ss_pred hchhHHHHHHHHhccccccccccchh------hhhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHHHH
Confidence 45556666677776111100111000 000001111111 1111111111 1 112344556666777
Q ss_pred HhcC--------C-------hhhHHHHhccCCChHHHHHHHhc----CC------------hHHHHHHHHHHHHhcccCc
Q 041252 343 ALSS--------L-------PEGKLALKDCANTIPNTVRLLMR----VS------------EDCTQYALSILWSICKIAP 391 (450)
Q Consensus 343 ~L~~--------~-------~e~r~~i~~~~g~i~~Lv~lL~~----~s------------~~~~e~A~~~L~~L~~~~~ 391 (450)
.++. . +--+..+.. -||+..++.++.. .+ -..-+.+.++|-+.+..+.
T Consensus 176 ~l~~~~~~~~~~~~t~~~~~~~fkeelr~-lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~ 254 (361)
T PF07814_consen 176 SLVRSLREAGDLSETSSRAGEWFKEELRE-LGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSE 254 (361)
T ss_pred HHHHHHhhcccchhhhhhccccchhhhhh-HHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCc
Confidence 6641 0 112455555 6899999999872 11 1345678889988887665
Q ss_pred hhHH-HHHHhcChHHHHHHHHHcCCCHHHHH---HHHHHHHHHHhhc
Q 041252 392 EECS-SAAVDAGLAAKLFLVIQSGCNPVLKQ---RSAELLKLCSLNY 434 (450)
Q Consensus 392 ~~~~-~~~~~~G~i~~L~~ll~s~~~~~~k~---~A~~lL~~ls~~~ 434 (450)
+... ......+..+.+...+-..+.+...+ .+..++-+++.+.
T Consensus 255 ~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n 301 (361)
T PF07814_consen 255 ENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN 301 (361)
T ss_pred cchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC
Confidence 4321 11223455555554443333343333 4444444455553
No 232
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=89.66 E-value=1.1 Score=41.70 Aligned_cols=83 Identities=19% Similarity=0.198 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHhcCChhhHHHHhccCC-------ChHHHHHHHhc-CChHHHHHHHHHHHHhcccCchhHHHHHHhcC
Q 041252 331 PDCLQLALCILDALSSLPEGKLALKDCAN-------TIPNTVRLLMR-VSEDCTQYALSILWSICKIAPEECSSAAVDAG 402 (450)
Q Consensus 331 ~~~~~~al~~L~~L~~~~e~r~~i~~~~g-------~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G 402 (450)
..-+..|+.+|..|+..+.|...+.. .+ .+..|++++.. .+.-.+|.|+..|.+||..++.-++..+.+.+
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLa-Tpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILA-TPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeee-CCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 35688999999999998888777765 33 34455566544 35678999999999999988755666777899
Q ss_pred hHHHHHHHHHcC
Q 041252 403 LAAKLFLVIQSG 414 (450)
Q Consensus 403 ~i~~L~~ll~s~ 414 (450)
.+..|+.++...
T Consensus 217 ~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 CISHLIAFIEDA 228 (257)
T ss_pred hHHHHHHHHHHH
Confidence 999999999765
No 233
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=89.45 E-value=17 Score=41.45 Aligned_cols=240 Identities=15% Similarity=0.133 Sum_probs=139.2
Q ss_pred HHhhCC---hHHHHhhhCCCCChhhHHHHHHHHHhcCC--CchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 041252 187 MVDEGG---VALISSLLGPFTSHAVGSEAVGVLVNLTL--DSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLM 261 (450)
Q Consensus 187 i~~~G~---i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~--~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La 261 (450)
..+.|+ ++.+...++.-.....+-+|+..|..|+. +++++- -..+|.++.++......+|..|..+|..+.
T Consensus 415 ~~~~ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L 490 (1431)
T KOG1240|consen 415 PKEEGAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELL 490 (1431)
T ss_pred ccccceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 344565 45566666554345677889999999886 344432 235899999999889999999998887773
Q ss_pred c----cCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh----HHHHHHHhc-----------------
Q 041252 262 E----EKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN----EVRSLVVSI----------------- 316 (450)
Q Consensus 262 ~----~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~----~~~~~iv~~----------------- 316 (450)
. -+.....++. .=++|.|-.++.+....-++.+-+..|..|+..- +.-..+..+
T Consensus 491 ~~Vr~~~~~daniF~-eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~ 569 (1431)
T KOG1240|consen 491 ALVRDIPPSDANIFP-EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYN 569 (1431)
T ss_pred hhccCCCcccchhhH-hhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccc
Confidence 1 1222233332 2346777777766423334444444444443110 000011111
Q ss_pred --------CCHHHHHHhcCCCChhHHHHHHHHHHHhcC-------------------C---hhhHHHHhc----------
Q 041252 317 --------GAVPQLVELLPSLDPDCLQLALCILDALSS-------------------L---PEGKLALKD---------- 356 (450)
Q Consensus 317 --------G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-------------------~---~e~r~~i~~---------- 356 (450)
++=...+.+|.++++-++..-+..|.-||. + ..-|.++.+
T Consensus 570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG 649 (1431)
T KOG1240|consen 570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG 649 (1431)
T ss_pred hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence 122344555666666666655555555553 1 123444433
Q ss_pred ----cCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252 357 ----CANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL 432 (450)
Q Consensus 357 ----~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~ 432 (450)
.+..+|.|.+-|....+.+...|+++|..|++..- .++.++- ..+....-+|.++ +.=+|+.+..++.-...
T Consensus 650 ~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l--l~K~~v~-~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 650 WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL--LRKPAVK-DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc--cchHHHH-HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 13557777888888888999999999999988652 1122211 2334444566666 56788888888877666
Q ss_pred hcC
Q 041252 433 NYT 435 (450)
Q Consensus 433 ~~~ 435 (450)
.+.
T Consensus 726 ~ls 728 (1431)
T KOG1240|consen 726 QLS 728 (1431)
T ss_pred hhh
Confidence 644
No 234
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.37 E-value=15 Score=32.72 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCc-hHHHHHH
Q 041252 163 GQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAK-VSLLVDM 241 (450)
Q Consensus 163 ~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~-i~~Lv~l 241 (450)
+.+|..++-.+..++...+.. ++ ..++.+...|.+. +..++..|+.+|..|...+--| -.|- +..++..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~----ve-~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNL----VE-PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHH----HH-hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 467888999999998765532 22 2378888999876 7899999999999987543222 2343 3788888
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhc
Q 041252 242 LNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286 (450)
Q Consensus 242 L~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~ 286 (450)
+...+++++..|..++..+....... .+ ...++.++.-+..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~--~i--~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPN--II--YNNFPELISSLNN 112 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccch--HH--HHHHHHHHHHHhC
Confidence 88889999999999999997552111 12 2345555555554
No 235
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=89.27 E-value=6.8 Score=38.93 Aligned_cols=198 Identities=10% Similarity=0.116 Sum_probs=134.3
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHH-----HHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCch
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASA-----RKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSE 224 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~-----r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~ 224 (450)
.+..|+..|...+-+.|..+.....++....... ...+... .-..+..++....+.++.-.+-.+|+.+..++.
T Consensus 77 ll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRec~k~e~ 155 (335)
T PF08569_consen 77 LLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRECIKHES 155 (335)
T ss_dssp HHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHHHHhhHH
Confidence 4556777777777778877777777666543322 2233332 122333344333355677778889999999988
Q ss_pred hhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-ChhhHhhh--hhHHHHHHHHHhcCCCccchhHHHHHHH
Q 041252 225 SKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD-FRPEIVSS--HRLLIGLMRLVKNKRHPNGILPGLSLLR 301 (450)
Q Consensus 225 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~-~~~~~~~~--~g~l~~Lv~lL~~~~~~~~~~~al~aL~ 301 (450)
..+.+.....+..+......++-++...|-.++..|-..+. ...+.+.. ...+...-.+|.++ +=-+++.++..|.
T Consensus 156 l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkLL~ 234 (335)
T PF08569_consen 156 LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKLLG 234 (335)
T ss_dssp HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHHHH
Confidence 77888888899999999999999999999999998754332 22222211 24566666777776 4557889999999
Q ss_pred HhccChHHHHHHHh----cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh
Q 041252 302 SICLLNEVRSLVVS----IGAVPQLVELLPSLDPDCLQLALCILDALSSLPE 349 (450)
Q Consensus 302 ~Ls~~~~~~~~iv~----~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e 349 (450)
.|-.+..|...|.. ..-+..++.+|++.+..++-.|..+......+|.
T Consensus 235 ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 235 ELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred HHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 99987777654443 4677888999999999999999999998776653
No 236
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.26 E-value=0.76 Score=28.23 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=24.6
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 041252 235 VSLLVDMLNEGSVETKINCTRLIEKLME 262 (450)
Q Consensus 235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~ 262 (450)
+|.++++++++++++|..|+.+|..+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999998864
No 237
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.25 E-value=3 Score=36.88 Aligned_cols=108 Identities=18% Similarity=0.223 Sum_probs=70.8
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh--hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc----cCh
Q 041252 234 KVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV--SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC----LLN 307 (450)
Q Consensus 234 ~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~--~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls----~~~ 307 (450)
-+..+..+|++.+.+.|-.++.++..+...++ .+++ .....+..|+.+|++...+.+.+.+..+|..|. ..+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 35667778888899999999999988876653 2344 233478999999998655666778888877775 333
Q ss_pred HHHHHHHh---cCCHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252 308 EVRSLVVS---IGAVPQLVELLPSLDPDCLQLALCILDALS 345 (450)
Q Consensus 308 ~~~~~iv~---~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~ 345 (450)
+...++.- .+.++.++.++++ ....+.++.+|..+-
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 33333332 2455566666653 455666666666554
No 238
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=88.93 E-value=34 Score=36.15 Aligned_cols=278 Identities=15% Similarity=0.144 Sum_probs=150.6
Q ss_pred hhhcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCCh--HHHHhhhCCCCChhhHHHHHHHHHh-cCC-
Q 041252 147 VQGRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGV--ALISSLLGPFTSHAVGSEAVGVLVN-LTL- 221 (450)
Q Consensus 147 ~~~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i--~~Lv~lL~~~~~~~v~~~Al~~L~~-Ls~- 221 (450)
+++....++...... ....+..++..+...|.... -...+...+.| ......++..++..++-.|+++|.+ |-.
T Consensus 131 wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~-Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv 209 (858)
T COG5215 131 WPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEA-PEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV 209 (858)
T ss_pred chHHHHHHHHhccccCchHhHHHHHHHHHHHhhccC-HHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 344455555555443 34578889999988886432 23344444443 2333566666677888889999887 322
Q ss_pred -----CchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CCChhhHhhhhhHHHHHHHHHhcCCCccchhH
Q 041252 222 -----DSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEE-KDFRPEIVSSHRLLIGLMRLVKNKRHPNGILP 295 (450)
Q Consensus 222 -----~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~-~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~ 295 (450)
.+++|..+ ++..++.-+..+.+++..|-.+|..+..- -+..+-.+ +.-+...+.+..++. +.++...
T Consensus 210 ~~nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ym-E~aL~alt~~~mks~-nd~va~q 282 (858)
T COG5215 210 QGNFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYM-ENALAALTGRFMKSQ-NDEVAIQ 282 (858)
T ss_pred HHhhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCc-chHHHHH
Confidence 33344444 45556667777899999998888877532 22222222 222223333444444 4555555
Q ss_pred HHHHHHHhccCh-H--------------HH--HHHHhcCCHHHHHHhcCC--CC-----hhHHHHHHHHHH---HhcCCh
Q 041252 296 GLSLLRSICLLN-E--------------VR--SLVVSIGAVPQLVELLPS--LD-----PDCLQLALCILD---ALSSLP 348 (450)
Q Consensus 296 al~aL~~Ls~~~-~--------------~~--~~iv~~G~v~~Lv~lL~~--~~-----~~~~~~al~~L~---~L~~~~ 348 (450)
+...-..+|..+ + |. .+..-+.++|.|+.+|.. .+ =.....|...|. .++.+.
T Consensus 283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~ 362 (858)
T COG5215 283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK 362 (858)
T ss_pred HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH
Confidence 555443444211 0 10 111123588999999943 11 123333333443 333321
Q ss_pred hhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041252 349 EGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLK 428 (450)
Q Consensus 349 e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~ 428 (450)
|.+ ..+.-+=+-+.+.+-..+|.|+.++..+.....+.+....+ ..++|.+..++...| --+|..+++.+.
T Consensus 363 -----i~~--pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~-l~vk~ttAwc~g 433 (858)
T COG5215 363 -----IMR--PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSC-LWVKSTTAWCFG 433 (858)
T ss_pred -----hHH--HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccce-eehhhHHHHHHH
Confidence 111 01111123344455577888999998886654333333323 456788888876553 446777777787
Q ss_pred HHHhhcCCCcccccc
Q 041252 429 LCSLNYTDTTFISKC 443 (450)
Q Consensus 429 ~ls~~~~~~~~i~~~ 443 (450)
.++.+ -...|++|
T Consensus 434 ~iad~--va~~i~p~ 446 (858)
T COG5215 434 AIADH--VAMIISPC 446 (858)
T ss_pred HHHHH--HHHhcCcc
Confidence 77776 23344444
No 239
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.88 E-value=0.34 Score=46.96 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=39.3
Q ss_pred CCC--CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252 65 EIP--SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 65 ~~p--~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 114 (450)
++| ++-+||||-----..|..||||.-|..||.+++.+ ...|=.|+...
T Consensus 416 ~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv 466 (489)
T KOG4692|consen 416 DLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTV 466 (489)
T ss_pred CCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEeccee
Confidence 555 57899999876677778899999999999999986 56676665543
No 240
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=88.79 E-value=19 Score=35.09 Aligned_cols=161 Identities=19% Similarity=0.149 Sum_probs=99.2
Q ss_pred HHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-C-chhhh------
Q 041252 156 GTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-D-SESKT------ 227 (450)
Q Consensus 156 ~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~-~~~k~------ 227 (450)
..+++.+..+|..|+++|...+--+.+.-. . .++.+...+... +..++..|+.++..+.. + .+...
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~----~-~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~ 107 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELAK----E-HLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIFDSESDND 107 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHHH----H-HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhccchhccC
Confidence 556777789999999999988875542211 1 267777777554 78899999999988432 2 12111
Q ss_pred -hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhh-hhHHHHHHHHHhcCCCcc--chhHHHHH-HHH
Q 041252 228 -NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSS-HRLLIGLMRLVKNKRHPN--GILPGLSL-LRS 302 (450)
Q Consensus 228 -~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~-~g~l~~Lv~lL~~~~~~~--~~~~al~a-L~~ 302 (450)
.......+..+.+.|.+.+++++..|+..+..|.-.+. +.. ..++..|+-+.-++...+ -.+.++.. +-.
T Consensus 108 ~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~-----i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~ 182 (298)
T PF12719_consen 108 ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR-----ISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPV 182 (298)
T ss_pred ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHH
Confidence 12234567788888888899999999999988854432 222 455666655544432211 23344443 334
Q ss_pred hcc-ChHHHHHHHhcCCHHHHHHhcCC
Q 041252 303 ICL-LNEVRSLVVSIGAVPQLVELLPS 328 (450)
Q Consensus 303 Ls~-~~~~~~~iv~~G~v~~Lv~lL~~ 328 (450)
.+. +.+++ ..+..+.++.+-.+.+.
T Consensus 183 y~~s~~~~Q-~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 183 YASSSPENQ-ERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHcCCHHHH-HHHHHHHHHHHHHHHhC
Confidence 554 44454 44555566666665543
No 241
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=88.63 E-value=0.5 Score=29.05 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252 319 VPQLVELLPSLDPDCLQLALCILDALSS 346 (450)
Q Consensus 319 v~~Lv~lL~~~~~~~~~~al~~L~~L~~ 346 (450)
+|.+++++.+.+++++..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999998864
No 242
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.53 E-value=4.2 Score=44.57 Aligned_cols=170 Identities=19% Similarity=0.258 Sum_probs=109.4
Q ss_pred HHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchH--HHHHHhcCC-CHH
Q 041252 172 ELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVS--LLVDMLNEG-SVE 248 (450)
Q Consensus 172 ~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~--~Lv~lL~~~-~~~ 248 (450)
.|.....+++++.+.+.+.||...+...++.++..+.+..+++.+.+++...+.+...+.-..+. ..-.+++.- +.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 56678888899999999999999999999988778899999999999887665554433222222 222233333 346
Q ss_pred HHHHHHHHHHHHhccCCChhhHh-----------------------hhhhHHHH-HHHHHhcCCCccchhHHHHHHHHhc
Q 041252 249 TKINCTRLIEKLMEEKDFRPEIV-----------------------SSHRLLIG-LMRLVKNKRHPNGILPGLSLLRSIC 304 (450)
Q Consensus 249 ~~~~aa~~L~~La~~~~~~~~~~-----------------------~~~g~l~~-Lv~lL~~~~~~~~~~~al~aL~~Ls 304 (450)
.-.+|+.+|..+..+.+...... .....+.+ ..+++.....+..+..|++++.++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 77778888877754422110000 00122223 4445555445667778888888887
Q ss_pred -cChHHHHHHHhcCCHHHHHHhcCCC-ChhHHHHHHHHH
Q 041252 305 -LLNEVRSLVVSIGAVPQLVELLPSL-DPDCLQLALCIL 341 (450)
Q Consensus 305 -~~~~~~~~iv~~G~v~~Lv~lL~~~-~~~~~~~al~~L 341 (450)
.+++++..+.+.|+++.+.+.-... ...+++.+...+
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 5667888888889888877765221 344444444443
No 243
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=88.32 E-value=4.9 Score=35.23 Aligned_cols=131 Identities=16% Similarity=0.110 Sum_probs=82.7
Q ss_pred CccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHH
Q 041252 289 HPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRL 367 (450)
Q Consensus 289 ~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~l 367 (450)
.++++..++-++..+- +..+....+. .-+.+-..+...+.+-...++.+|..|-.. ++-...+...+|.++.++.+
T Consensus 18 ~~~~r~~a~v~l~k~l--~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 18 PEEVRSHALVILSKLL--DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp SCCHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHH--HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 4667777777776662 3333333221 122344444555556777888888888754 77777776658999999999
Q ss_pred Hh--cCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHH-HHHHHHH
Q 041252 368 LM--RVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPV-LKQRSAE 425 (450)
Q Consensus 368 L~--~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~-~k~~A~~ 425 (450)
+. ..+...+..++.+|..-|... .++..+.+.| ++.|-.+...+.++. +|-.|+-
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~--~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v 152 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDK--SCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAV 152 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSH--HHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccH--HHHHHHHHHH-HHHHHHHHccccchHHHHHHHHH
Confidence 98 567788888888887755542 4555445555 588888886554555 5555543
No 244
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=88.31 E-value=13 Score=38.80 Aligned_cols=151 Identities=24% Similarity=0.314 Sum_probs=104.4
Q ss_pred HHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCH----HHHHHHHHHHHHHhccCCChhh
Q 041252 194 ALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSV----ETKINCTRLIEKLMEEKDFRPE 269 (450)
Q Consensus 194 ~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~----~~~~~aa~~L~~La~~~~~~~~ 269 (450)
..+.+++.++ +...+-.|+..|..++.+..--..+....++..|..+..++.. +.......++..|....-.-.+
T Consensus 86 ~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 86 KRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 3455666665 5566666999999999998888888999999999999987743 3344444444444322211111
Q ss_pred HhhhhhHHHHHHHHHhcC-CCccchhHHHHHHHHhccChH-HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252 270 IVSSHRLLIGLMRLVKNK-RHPNGILPGLSLLRSICLLNE-VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS 346 (450)
Q Consensus 270 ~~~~~g~l~~Lv~lL~~~-~~~~~~~~al~aL~~Ls~~~~-~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~ 346 (450)
.....++.....+++.+ .+.++...|+..|-++..... -+..+.+.--+..|+..|..++..++..|++.|-.|-.
T Consensus 165 -~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 165 -SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred -ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 12334555555555432 345677889999998885544 66677788899999999998898888888888887763
No 245
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.85 E-value=3.5 Score=35.56 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=64.4
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCC
Q 041252 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTD 436 (450)
Q Consensus 360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~ 436 (450)
++..|.+-|.+.++.++-.|+.+|-.+.+++......++...+.+..|..++....++.+|+++..++..-+...++
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 56678888888899999999999999999886666667778889999999987666789999999999988776544
No 246
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.84 E-value=13 Score=42.39 Aligned_cols=232 Identities=19% Similarity=0.190 Sum_probs=133.3
Q ss_pred HHHHHHHhhcc-chHHHHHHHHHHHHHHHH-cHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhc-CCCc---h
Q 041252 151 ASELLGTLKKV-KGQARVQALKELHQIAAA-HASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNL-TLDS---E 224 (450)
Q Consensus 151 i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~L-s~~~---~ 224 (450)
+.-+...++.. ..+.+.+|+.-|+.++.. +.+++- -.++|-++.++... ...|+..|+.+|..+ +.-. .
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDS-EADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCCc
Confidence 34444455542 356788899999988863 233322 23579999999875 678999999888873 3211 1
Q ss_pred hhhhccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhc-----------------cCCChh----hHhh--h----hhH
Q 041252 225 SKTNLMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLME-----------------EKDFRP----EIVS--S----HRL 276 (450)
Q Consensus 225 ~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~-----------------~~~~~~----~~~~--~----~g~ 276 (450)
.-..|.-.=.+|.|-.++.. ....+|..=|..|..||. .++.+. +.-. . ...
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT 578 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence 22234444557777777765 333333333333333320 111111 0000 0 012
Q ss_pred HHHH-HHHHhcCCCccchhHHHHHHHHhcc-Ch---------------------HHHHHH---------------HhcCC
Q 041252 277 LIGL-MRLVKNKRHPNGILPGLSLLRSICL-LN---------------------EVRSLV---------------VSIGA 318 (450)
Q Consensus 277 l~~L-v~lL~~~~~~~~~~~al~aL~~Ls~-~~---------------------~~~~~i---------------v~~G~ 318 (450)
+..+ +.+|.+. .+.++..-+..|.-||. .. .-|..+ ++.+.
T Consensus 579 V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyl 657 (1431)
T KOG1240|consen 579 VEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYL 657 (1431)
T ss_pred HHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHH
Confidence 2222 2334443 45566666666666651 10 112222 34557
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 041252 319 VPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIA 390 (450)
Q Consensus 319 v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 390 (450)
+|.|.+-|.++.+-+...|+.+|..|+....-++..+- ..+..+.-+|-+.+.=++..+++++..+...-
T Consensus 658 lPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 658 LPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 78888888888999999999999999987655554432 24555555566667778889999998876543
No 247
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=87.80 E-value=0.46 Score=43.57 Aligned_cols=57 Identities=25% Similarity=0.272 Sum_probs=42.7
Q ss_pred eeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcC-CCCCCC--cCCcCCCCCCcchHHH
Q 041252 69 VFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLG-RYTCPT--TMQELWDDSVTPNKTL 125 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~-~~~cP~--~~~~l~~~~l~~n~~L 125 (450)
+.+|||+.+....|++- .|.|.|++..|...++.. ...||. |-+....+.+..++-|
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 46899999999999874 599999999999998831 345776 3344555666666654
No 248
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=87.77 E-value=23 Score=36.25 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=75.9
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CC-------ChhhHhhhh----hHHHHHHHHHhcCCCccchhHHHHHHH
Q 041252 234 KVSLLVDMLNEGSVETKINCTRLIEKLMEE-KD-------FRPEIVSSH----RLLIGLMRLVKNKRHPNGILPGLSLLR 301 (450)
Q Consensus 234 ~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~-~~-------~~~~~~~~~----g~l~~Lv~lL~~~~~~~~~~~al~aL~ 301 (450)
.+..|+.+|.+ ++....|+..+.-|..+ ++ .....+... -.+|.|++-.+.. +...+.+-+.||.
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs 348 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHH
Confidence 46777777765 67788899999888655 21 222223333 3456666655553 3336677888888
Q ss_pred HhccChHHHHHHHh-cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCh
Q 041252 302 SICLLNEVRSLVVS-IGAVPQLVELLPSLDPDCLQLALCILDALSSLP 348 (450)
Q Consensus 302 ~Ls~~~~~~~~iv~-~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~ 348 (450)
.+-.+-.....+-+ ...+|.|++-|+..+.+++..++.+|..+....
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 88765443333334 468899999998889999999999999887643
No 249
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=87.62 E-value=12 Score=41.37 Aligned_cols=178 Identities=16% Similarity=0.166 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHh
Q 041252 246 SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVEL 325 (450)
Q Consensus 246 ~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~l 325 (450)
.+.++..|..++..-++.. .-.--..+++.+|+.+.... +.++......+|...+..+.......+.-..|.++.+
T Consensus 504 ~~~~ki~a~~~~~~~~~~~---vl~~~~p~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~l 579 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYCKVK---VLLSLQPMILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINL 579 (1005)
T ss_pred CCchhHHHHHHHHhccCce---eccccchHHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHH
Confidence 5566777766666555221 11113457888888887654 5667777788888888666555566666677777666
Q ss_pred c--CCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCC----hHHHHHHHHHHHHhcccCchhHHHHHH
Q 041252 326 L--PSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVS----EDCTQYALSILWSICKIAPEECSSAAV 399 (450)
Q Consensus 326 L--~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s----~~~~e~A~~~L~~L~~~~~~~~~~~~~ 399 (450)
. .+.++.+...+--++..|+...++..-+.+ -.||.+|..|.... .....-|+.+|..+-+..+...-+..+
T Consensus 580 F~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e--~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~ 657 (1005)
T KOG2274|consen 580 FLKYSEDPQVASLAQDLFEELLQIAANYGPMQE--RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI 657 (1005)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH--HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH
Confidence 5 556788888888888888876555555543 57999999997653 344555677777666666554333333
Q ss_pred hcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252 400 DAGLAAKLFLVIQSGCNPVLKQRSAELLKLC 430 (450)
Q Consensus 400 ~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~l 430 (450)
. -++|.+....-+..+.++-++|-+.||-+
T Consensus 658 ~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~ 687 (1005)
T KOG2274|consen 658 C-YAFPAVAKITLHSDDHETLQNATECLRAL 687 (1005)
T ss_pred H-HHhHHhHhheeecCChHHHHhHHHHHHHH
Confidence 3 24566655543332555667777766654
No 250
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.45 E-value=0.26 Score=53.68 Aligned_cols=51 Identities=22% Similarity=0.479 Sum_probs=39.0
Q ss_pred CCCCeeeCcCCCCCCC--C---CeeC--CCCCcccHHHHHHHHhc-CCCCCCCcCCcCC
Q 041252 65 EIPSVFVCPISLEPMQ--D---PVTL--CTGQTYERSNILKWFSL-GRYTCPTTMQELW 115 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~--d---Pv~~--~~g~ty~r~~I~~~~~~-~~~~cP~~~~~l~ 115 (450)
....+--|+||--++. | |--. .|.|.|--+|+.+|+.. ++.+||.||..++
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 4555567999988876 3 5433 38899999999999985 5678999996553
No 251
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.33 E-value=2.3 Score=39.30 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCC-----hHHHHHHHHHHHHhcccCchhHHHHHHhcChHHH
Q 041252 332 DCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVS-----EDCTQYALSILWSICKIAPEECSSAAVDAGLAAK 406 (450)
Q Consensus 332 ~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s-----~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~ 406 (450)
.-.-.|+.+|..++++|+.|..+.+ +..---+...|...+ +..+-.+++++.++.++++...........++|.
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 3456789999999999999999998 554333344443322 3456678999999999887666677778899999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Q 041252 407 LFLVIQSGCNPVLKQRSAELLKL 429 (450)
Q Consensus 407 L~~ll~s~~~~~~k~~A~~lL~~ 429 (450)
++.++..| ++..|--|.-++..
T Consensus 194 cLrIme~g-SElSktvaifI~qk 215 (315)
T COG5209 194 CLRIMELG-SELSKTVAIFIFQK 215 (315)
T ss_pred HHHHHHhh-hHHHHHHHHHHHHH
Confidence 99999998 66666666655554
No 252
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.33 E-value=11 Score=42.49 Aligned_cols=253 Identities=17% Similarity=0.183 Sum_probs=143.8
Q ss_pred HHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCC---
Q 041252 170 LKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGS--- 246 (450)
Q Consensus 170 l~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~--- 246 (450)
-..|-.+.+++.+|.+.+.++.|+..++.++- +++-+...+.++..|-..+.- -++..-+-.+|..|+++-
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpfli---ndehRSslLrivscLitvdpk---qvhhqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLI---NDEHRSSLLRIVSCLITVDPK---QVHHQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeee---chHHHHHHHHHHHHHhccCcc---cccHHHHHHHHHHHHhcceec
Confidence 45677788889999999999999999998883 345566566666554332211 112334567777777642
Q ss_pred ---------HHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhc-----CCCcc----chhHHHHHHH---Hh--
Q 041252 247 ---------VETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN-----KRHPN----GILPGLSLLR---SI-- 303 (450)
Q Consensus 247 ---------~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~-----~~~~~----~~~~al~aL~---~L-- 303 (450)
........++++.....+...+..+++.+++..|...|.. +-+++ +...-...|. .+
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 1233445567777765555555567777777777666542 00111 1112222222 22
Q ss_pred ccChHHHHHH-------------HhcC---------CHHHHHHhc----CCCChhHHHHHHHHHHHhcCC------h---
Q 041252 304 CLLNEVRSLV-------------VSIG---------AVPQLVELL----PSLDPDCLQLALCILDALSSL------P--- 348 (450)
Q Consensus 304 s~~~~~~~~i-------------v~~G---------~v~~Lv~lL----~~~~~~~~~~al~~L~~L~~~------~--- 348 (450)
|.+..|+..+ .+.| .|..|.++- .......--.|+..+-.+-.+ |
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 3444555432 2233 222222221 101111111222222222211 1
Q ss_pred --hhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHH---HcCCCHHHHHHH
Q 041252 349 --EGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVI---QSGCNPVLKQRS 423 (450)
Q Consensus 349 --e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll---~s~~~~~~k~~A 423 (450)
..++.|.. +|++..+++.+...+++.+-.-+..+..+++.++.. +...-..|.+..|+.++ .+|++|-. ..|
T Consensus 897 fnpdk~~iyn-agavRvlirslLlnypK~qlefl~lleSlaRaspfn-aelltS~gcvellleIiypflsgsspfL-sha 973 (2799)
T KOG1788|consen 897 FNPDKQKIYN-AGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFN-AELLTSAGCVELLLEIIYPFLSGSSPFL-SHA 973 (2799)
T ss_pred cCchHhhhcc-cchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCc-hhhhhcccHHHHHHHHhhhhhcCCchHh-hcc
Confidence 23566777 899999999999999999988889999999888744 33334579999888877 45655543 444
Q ss_pred HHHHHHHH
Q 041252 424 AELLKLCS 431 (450)
Q Consensus 424 ~~lL~~ls 431 (450)
..++.++.
T Consensus 974 lkIvemLg 981 (2799)
T KOG1788|consen 974 LKIVEMLG 981 (2799)
T ss_pred HHHHHHHh
Confidence 44554443
No 253
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=87.23 E-value=3.8 Score=35.42 Aligned_cols=77 Identities=13% Similarity=0.208 Sum_probs=64.5
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCC
Q 041252 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTD 436 (450)
Q Consensus 360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~ 436 (450)
++..|.+-|.+.++.++-.|+.+|-.+.+++......++.....+..|..++....++.+|++...+++..+....+
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 45677788888889999999999999999997666677778888899999997756889999999999998877543
No 254
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=87.13 E-value=36 Score=34.44 Aligned_cols=82 Identities=10% Similarity=0.111 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhC-CC--CChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHH
Q 041252 164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLG-PF--TSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD 240 (450)
Q Consensus 164 ~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~-~~--~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~ 240 (450)
.+-..|+..+..+..++|..-..+.++|.++.++..+. .. .+.++....-.++..|+.+....+.+.+.+.++.+++
T Consensus 124 ~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~ 203 (379)
T PF06025_consen 124 SVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFE 203 (379)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHH
Confidence 45566888888899899999899999999999998776 32 1345555555666668899999999999999999999
Q ss_pred HhcCC
Q 041252 241 MLNEG 245 (450)
Q Consensus 241 lL~~~ 245 (450)
++.+.
T Consensus 204 if~s~ 208 (379)
T PF06025_consen 204 IFTSP 208 (379)
T ss_pred HhCCH
Confidence 88643
No 255
>PLN02195 cellulose synthase A
Probab=86.88 E-value=0.55 Score=52.10 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=37.9
Q ss_pred eCcCCCC-----CCCCCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 71 VCPISLE-----PMQDPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 71 ~Cpi~~~-----~m~dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
.|.||++ .+-+|-+++ ||+-.||.|.|-=-++|+..||+|+.++.
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 6999997 456888875 99999999996556678999999998876
No 256
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=86.82 E-value=27 Score=36.88 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=16.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhc
Q 041252 363 NTVRLLMRVSEDCTQYALSILWSIC 387 (450)
Q Consensus 363 ~Lv~lL~~~s~~~~e~A~~~L~~L~ 387 (450)
.|-+.+....+++++.|.-.|.++-
T Consensus 530 ~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 530 ALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhhh
Confidence 3445555566777777777776664
No 257
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=86.72 E-value=49 Score=37.11 Aligned_cols=228 Identities=14% Similarity=0.175 Sum_probs=122.6
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHH-HHHHhhCChHHHH-hhhCCC-CChhhHHHHHH-HHHhcCCCch
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASAR-KTMVDEGGVALIS-SLLGPF-TSHAVGSEAVG-VLVNLTLDSE 224 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r-~~i~~~G~i~~Lv-~lL~~~-~~~~v~~~Al~-~L~~Ls~~~~ 224 (450)
..+..+++.|+..++++|.-|+++|.-+++.=.+.+ +.+ +.-|+ .++... +...+..-++. .+.|+.-
T Consensus 47 kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~-----ve~L~~~~~s~keq~rdissi~Lktvi~nl~P--- 118 (1233)
T KOG1824|consen 47 KVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETI-----VENLCSNMLSGKEQLRDISSIGLKTVIANLPP--- 118 (1233)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHH-----HHHHhhhhccchhhhccHHHHHHHHHHhcCCC---
Confidence 457788999999999999999999999986433222 122 22233 233221 01122222222 2222331
Q ss_pred hhhhccCCCchHHHHHHhcC-----C-CHHHHHHHHHHHHHHh-ccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHH
Q 041252 225 SKTNLMQPAKVSLLVDMLNE-----G-SVETKINCTRLIEKLM-EEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGL 297 (450)
Q Consensus 225 ~k~~i~~~g~i~~Lv~lL~~-----~-~~~~~~~aa~~L~~La-~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al 297 (450)
.-.....+...+.+...|.. + ...++-.+..++...- ...+.... -..+.+..++.-+.+. ...+++.+.
T Consensus 119 ~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~--fh~~il~~l~~ql~s~-R~aVrKkai 195 (1233)
T KOG1824|consen 119 SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN--FHLSILKCLLPQLQSP-RLAVRKKAI 195 (1233)
T ss_pred ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc--hHHHHHHHHhhcccCh-HHHHHHHHH
Confidence 11222233344444444432 1 2335666666665542 22222211 1234455555555554 355778899
Q ss_pred HHHHHhccC--hHHHHHHHhcCCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHH---hcC
Q 041252 298 SLLRSICLL--NEVRSLVVSIGAVPQLVELLPSL-DPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLL---MRV 371 (450)
Q Consensus 298 ~aL~~Ls~~--~~~~~~iv~~G~v~~Lv~lL~~~-~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL---~~~ 371 (450)
.+|..|+.. ...-. +.+..|+.=|... .+....--+.+|..++.....|.---- ...+|.+++.. ...
T Consensus 196 ~~l~~la~~~~~~ly~-----~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~-~~ivp~v~~y~~~~e~~ 269 (1233)
T KOG1824|consen 196 TALGHLASSCNRDLYV-----ELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHL-DKIVPLVADYCNKIEED 269 (1233)
T ss_pred HHHHHHHHhcCHHHHH-----HHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhccc-chhhHHHHHHhcccccC
Confidence 999988742 22222 3345666666433 344555555666666654333332222 35778888887 455
Q ss_pred ChHHHHHHHHHHHHhcccCchh
Q 041252 372 SEDCTQYALSILWSICKIAPEE 393 (450)
Q Consensus 372 s~~~~e~A~~~L~~L~~~~~~~ 393 (450)
.++.+|+++.+|..+-..+|.+
T Consensus 270 dDELrE~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 270 DDELREYCLQALESFLRRCPKE 291 (1233)
T ss_pred cHHHHHHHHHHHHHHHHhChhh
Confidence 6799999999998887776643
No 258
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=86.64 E-value=0.47 Score=33.37 Aligned_cols=46 Identities=13% Similarity=-0.052 Sum_probs=33.4
Q ss_pred eeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCC
Q 041252 70 FVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDS 118 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 118 (450)
..|=.|...=...++++|||..++.|..-+ ...-||.|+.++...+
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence 346666666677889999999999984433 2345999999886543
No 259
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=86.56 E-value=1.4 Score=45.05 Aligned_cols=181 Identities=10% Similarity=0.032 Sum_probs=105.9
Q ss_pred hHHHHHHHHHhcCCCchhhhh-ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhc---cCCCh--hhHhhhhh-HHHHH
Q 041252 208 VGSEAVGVLVNLTLDSESKTN-LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLME---EKDFR--PEIVSSHR-LLIGL 280 (450)
Q Consensus 208 v~~~Al~~L~~Ls~~~~~k~~-i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~---~~~~~--~~~~~~~g-~l~~L 280 (450)
+...|+.++.-+..|+..+.. +.-..+...+...|.+..-..|+.+++++.+++. .+... ...-+..| .+..+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 444555665555666655442 2334556666677777677889999999999852 11111 11111122 23333
Q ss_pred HHHHhc--CCCccchhHHHHHHHHhccChH----HHHHHHhcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCChhhHHH
Q 041252 281 MRLVKN--KRHPNGILPGLSLLRSICLLNE----VRSLVVSIGAVPQLVELL-PSLDPDCLQLALCILDALSSLPEGKLA 353 (450)
Q Consensus 281 v~lL~~--~~~~~~~~~al~aL~~Ls~~~~----~~~~iv~~G~v~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~e~r~~ 353 (450)
.+.-.. .....+..++.++|.|+...-+ --......|.+..++... -.....++.+++.++.||-+++.-+-+
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq 566 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ 566 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence 333221 1234578899999999983222 111222345555555443 334678999999999999998754322
Q ss_pred Hhcc-CCChHHHHHHHhcC-ChHHHHHHHHHHHHhcc
Q 041252 354 LKDC-ANTIPNTVRLLMRV-SEDCTQYALSILWSICK 388 (450)
Q Consensus 354 i~~~-~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~ 388 (450)
-.+- .-..+.|..++... +.+++-+|+++|.....
T Consensus 567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 2211 23577788887665 46788888888866544
No 260
>PF04641 Rtf2: Rtf2 RING-finger
Probab=86.51 E-value=0.81 Score=43.81 Aligned_cols=35 Identities=26% Similarity=0.541 Sum_probs=31.4
Q ss_pred eeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcC
Q 041252 69 VFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSLG 103 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~ 103 (450)
-++|+|+++.+++||+.+ -|+-|.+..|-+|+...
T Consensus 34 w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 34 WTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred cCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 578999999999999764 89999999999998863
No 261
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.33 E-value=0.48 Score=37.65 Aligned_cols=27 Identities=22% Similarity=0.564 Sum_probs=24.0
Q ss_pred CCCCcccHHHHHHHHhcCCCCCCCcCCc
Q 041252 86 CTGQTYERSNILKWFSLGRYTCPTTMQE 113 (450)
Q Consensus 86 ~~g~ty~r~~I~~~~~~~~~~cP~~~~~ 113 (450)
.|.|.|--.||.+|++. ...||.++++
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 48999999999999997 6789999764
No 262
>PLN02189 cellulose synthase
Probab=86.25 E-value=0.5 Score=52.76 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=37.9
Q ss_pred eeCcCCCCC-----CCCCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 70 FVCPISLEP-----MQDPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 70 ~~Cpi~~~~-----m~dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
-+|+||++- +-+|-+.+ ||+-.||.|.|-=.++|+..||.|+.++.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 389999975 44788775 99999999996667778999999998765
No 263
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.99 E-value=24 Score=38.56 Aligned_cols=90 Identities=17% Similarity=0.161 Sum_probs=43.3
Q ss_pred CccchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHH
Q 041252 289 HPNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRL 367 (450)
Q Consensus 289 ~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~l 367 (450)
++-+++.|+.|+-.|= .+++.+.+++ ..+=.+|.+.++.+...|+.+....| |+.-..|- +-...+-++
T Consensus 156 s~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evC--PerldLIH---knyrklC~l 225 (968)
T KOG1060|consen 156 SPYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVC--PERLDLIH---KNYRKLCRL 225 (968)
T ss_pred cHHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhc--hhHHHHhh---HHHHHHHhh
Confidence 3445555555555553 2333333333 23444455555566666666555554 33333332 235555555
Q ss_pred HhcCChHHHHHHHHHHHHhcc
Q 041252 368 LMRVSEDCTQYALSILWSICK 388 (450)
Q Consensus 368 L~~~s~~~~e~A~~~L~~L~~ 388 (450)
|....+=.|-..+..|..-|+
T Consensus 226 l~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 226 LPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred ccchhhhhHHHHHHHHHHHHH
Confidence 555555455555555555444
No 264
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.92 E-value=0.53 Score=46.19 Aligned_cols=49 Identities=27% Similarity=0.260 Sum_probs=41.9
Q ss_pred CeeeCcCCCCCCCC---CeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 68 SVFVCPISLEPMQD---PVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 68 ~~~~Cpi~~~~m~d---Pv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
+...|.|+++.|.| |.+.+.||+|-..+|+.|-...+-.||.++..+..
T Consensus 329 S~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~ 380 (389)
T KOG0396|consen 329 SRLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRY 380 (389)
T ss_pred hHHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccH
Confidence 45789999999996 99999999999999999977544789999876643
No 265
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=85.54 E-value=1 Score=37.71 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=40.5
Q ss_pred CeeeCcCCCCCCCCCeeC----CCCCcccHHHHHHHHhc--CCCCCCCcCCcCCCC
Q 041252 68 SVFVCPISLEPMQDPVTL----CTGQTYERSNILKWFSL--GRYTCPTTMQELWDD 117 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~----~~g~ty~r~~I~~~~~~--~~~~cP~~~~~l~~~ 117 (450)
.-+.|-||+|.-.|+--+ +||+..|-.|...-|+. -++.||.|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 568999999999987654 59999999999996553 367899998877543
No 266
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=85.35 E-value=30 Score=35.69 Aligned_cols=129 Identities=15% Similarity=0.197 Sum_probs=86.6
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHc---HHHHHHHHhhCChHHHHhhhCCCC------ChhhHHHHHHHHHhcCCCc
Q 041252 153 ELLGTLKKVKGQARVQALKELHQIAAAH---ASARKTMVDEGGVALISSLLGPFT------SHAVGSEAVGVLVNLTLDS 223 (450)
Q Consensus 153 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~---~~~r~~i~~~G~i~~Lv~lL~~~~------~~~v~~~Al~~L~~Ls~~~ 223 (450)
++..+++..+.+.|..|+--..++++.+ ..+|+.+.++=|.+-+-++|.+.. ++-.+.-++.+|..++.++
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 3455555555667888888888888753 568899999988999999996532 2334556778888777766
Q ss_pred hhh--hhccCCCchHHHHHHhcCC-CHH------HHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHH
Q 041252 224 ESK--TNLMQPAKVSLLVDMLNEG-SVE------TKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLV 284 (450)
Q Consensus 224 ~~k--~~i~~~g~i~~Lv~lL~~~-~~~------~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL 284 (450)
+-- ..+ -..||.|..++..+ +++ ..+.+-.+|...+...... ......|+++.+.++-
T Consensus 95 ElAsh~~~--v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~~~~~Q~y 161 (698)
T KOG2611|consen 95 ELASHEEM--VSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGL-MTLIASGGLRVIAQMY 161 (698)
T ss_pred hhccCHHH--HHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchh-HHHHhcCchHHHHHHH
Confidence 432 122 24688999998754 333 6677888888887664433 3344567777777653
No 267
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=85.32 E-value=31 Score=38.07 Aligned_cols=262 Identities=16% Similarity=0.085 Sum_probs=128.1
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHH-cHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252 152 SELLGTLKKVKGQARVQALKELHQIAAA-HASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM 230 (450)
Q Consensus 152 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~ 230 (450)
......++....+.+..+......++.. +...+..+.....+|.+-.+..+. +..++...+..+..++-- -.+..-+
T Consensus 358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~-~~~vr~a~a~~~~~~~p~-~~k~~ti 435 (759)
T KOG0211|consen 358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDN-ALHVRSALASVITGLSPI-LPKERTI 435 (759)
T ss_pred hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcc-cchHHHHHhccccccCcc-CCcCcCc
Confidence 3444455555555666666655555542 323344555555566665555443 444554444444333211 0111111
Q ss_pred CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHH
Q 041252 231 QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR 310 (450)
Q Consensus 231 ~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~ 310 (450)
.-..+..+..++...++++.+-...+..+-..++..-.-..+...++.++.+-.+. ...++.+....+..++....
T Consensus 436 -~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~-- 511 (759)
T KOG0211|consen 436 -SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG-- 511 (759)
T ss_pred -cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh--
Confidence 23456666677778889999877666555333433322334556777877765554 45566666677776664332
Q ss_pred HHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHH---HHHHHHHHhc
Q 041252 311 SLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQ---YALSILWSIC 387 (450)
Q Consensus 311 ~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e---~A~~~L~~L~ 387 (450)
..+...-..+.+..-+.+...++++.|...|..++..-. ...-.. ..++.++......+-..+. .++..|..+.
T Consensus 512 ~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~--~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~ 588 (759)
T KOG0211|consen 512 VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWARL--EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL 588 (759)
T ss_pred hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhHH--HhhHHHHHHhcCcccchhhHHHHHHHHHHHHh
Confidence 122221112222222344445788888877777764322 111111 2344444444443222222 2222222222
Q ss_pred ccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252 388 KIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLC 430 (450)
Q Consensus 388 ~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~l 430 (450)
. ..+...-.++.+..+.... .+.+|-+++..|..+
T Consensus 589 g-------~ei~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i 623 (759)
T KOG0211|consen 589 G-------QEITCEDLLPVFLDLVKDP-VANVRINVAKHLPKI 623 (759)
T ss_pred c-------cHHHHHHHhHHHHHhccCC-chhhhhhHHHHHHHH
Confidence 2 1222234555555555444 566666666655544
No 268
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.18 E-value=64 Score=35.45 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=36.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252 237 LLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL 305 (450)
Q Consensus 237 ~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~ 305 (450)
.+-+.....++-+|..||.+|-.|-+-+ .+ ....++..+=.+|.+. ++-+.-.|+.|.-.+|-
T Consensus 147 AIk~~~~D~s~yVRk~AA~AIpKLYsLd---~e--~k~qL~e~I~~LLaD~-splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 147 AIKKAVTDPSPYVRKTAAHAIPKLYSLD---PE--QKDQLEEVIKKLLADR-SPLVVGSAVMAFEEVCP 209 (968)
T ss_pred HHHHHhcCCcHHHHHHHHHhhHHHhcCC---hh--hHHHHHHHHHHHhcCC-CCcchhHHHHHHHHhch
Confidence 3333444557888888888888774332 11 1223333333344443 67777777777666663
No 269
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.42 E-value=0.38 Score=50.28 Aligned_cols=57 Identities=23% Similarity=0.396 Sum_probs=39.3
Q ss_pred eeeCcCCCCCCC----CCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCc-----CCCCCCcchHHHHHHH
Q 041252 69 VFVCPISLEPMQ----DPVTLCTGQTYERSNILKWFSLGRYTCPTTMQE-----LWDDSVTPNKTLYHLI 129 (450)
Q Consensus 69 ~~~Cpi~~~~m~----dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~-----l~~~~l~~n~~L~~~I 129 (450)
.++|+||...|- .||.+-||||.|+.|.+.-.. .+|| |... .+.++..-|++|.+.+
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp-~~~De~~~~~~~~e~p~n~alL~~~ 76 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP-TKRDEDSSLMQLKEEPRNYALLRRE 76 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC-CCccccchhcChhhcchhHHHHHhh
Confidence 467999966554 699999999999999988644 4577 3221 1224555667765554
No 270
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.27 E-value=67 Score=34.89 Aligned_cols=93 Identities=11% Similarity=0.033 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcC-CCChhHHHHHHHHHHHhcCChhhHHHH
Q 041252 276 LLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLP-SLDPDCLQLALCILDALSSLPEGKLAL 354 (450)
Q Consensus 276 ~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~-~~~~~~~~~al~~L~~L~~~~e~r~~i 354 (450)
++..|-++|.+. ..+.+--++..+..|++.+.....+-.. .+.++..|+ +.|..++..|+..|..+|. .+|.+.|
T Consensus 330 ~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD-~~Nak~I 405 (938)
T KOG1077|consen 330 AVNQLGQFLSHR-ETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD-VSNAKQI 405 (938)
T ss_pred HHHHHHHHhhcc-cccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc-hhhHHHH
Confidence 456777788776 5788888888888888765444333333 667888887 6688999999999999997 4455566
Q ss_pred hccCCChHHHHHHHhcCChHHHHH
Q 041252 355 KDCANTIPNTVRLLMRVSEDCTQY 378 (450)
Q Consensus 355 ~~~~g~i~~Lv~lL~~~s~~~~e~ 378 (450)
++ -+++.|.+.....+|.
T Consensus 406 V~------elLqYL~tAd~siree 423 (938)
T KOG1077|consen 406 VA------ELLQYLETADYSIREE 423 (938)
T ss_pred HH------HHHHHHhhcchHHHHH
Confidence 54 4666666655555544
No 271
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=84.22 E-value=7 Score=33.15 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=61.2
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhhcCC
Q 041252 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS--GCNPVLKQRSAELLKLCSLNYTD 436 (450)
Q Consensus 360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s--~~~~~~k~~A~~lL~~ls~~~~~ 436 (450)
++..|-+-|.+.++.++..|+.+|-.+.+++......++.....+..|+.++.. ..++.+|+++..++...+....+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 455777888888999999999999999998876555566655566668888865 45789999999999998887654
No 272
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=83.43 E-value=0.77 Score=51.49 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=37.2
Q ss_pred eCcCCCCC-----CCCCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 71 VCPISLEP-----MQDPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 71 ~Cpi~~~~-----m~dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
+|.||++- .-+|-+++ ||+-.||.|.|-=.++|+..||+|+.++.
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 79999975 44788875 99999999996556778999999998764
No 273
>PLN02436 cellulose synthase A
Probab=83.41 E-value=0.77 Score=51.42 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=37.9
Q ss_pred eeCcCCCCC-----CCCCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 70 FVCPISLEP-----MQDPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 70 ~~Cpi~~~~-----m~dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
-+|.||++- .-+|-+++ ||+-.||.|.+-=.++|+..||.|+.++.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 389999965 34688875 99999999996667778999999998765
No 274
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.36 E-value=0.55 Score=46.02 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=35.9
Q ss_pred CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 114 (450)
..|..-.|-||.+-..+-+-++|||+.| |+..... ...||.|++..
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI 346 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRI 346 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHH
Confidence 4455678999999999999999999988 6555433 35599998754
No 275
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=83.32 E-value=18 Score=38.65 Aligned_cols=166 Identities=13% Similarity=0.164 Sum_probs=93.8
Q ss_pred hhhCCCCChhhHHHHHHHHHhcCCCchhhhhccC----CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhh
Q 041252 198 SLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQ----PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSS 273 (450)
Q Consensus 198 ~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~----~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~ 273 (450)
..+... ..+.+-.|+.+|+.+..+...-..+.. ...+..++..++ .++..+..++++|.|+-.+.. ..+.+.+
T Consensus 551 ~~l~~w-p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~-g~~~~~s 627 (745)
T KOG0301|consen 551 AILLQW-PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPA-GRELFMS 627 (745)
T ss_pred HHHhcC-CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHH-HHHHHHH
Confidence 333343 456777888888887665544333322 224555555554 667788888999999966543 3333322
Q ss_pred h-hHHHHHHHHHhcCCCccchhHHHHHHHHhc--cChHHHHHHHhcCCHHHHHHhcCC-----CChhHHHHHHHHHHHhc
Q 041252 274 H-RLLIGLMRLVKNKRHPNGILPGLSLLRSIC--LLNEVRSLVVSIGAVPQLVELLPS-----LDPDCLQLALCILDALS 345 (450)
Q Consensus 274 ~-g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls--~~~~~~~~iv~~G~v~~Lv~lL~~-----~~~~~~~~al~~L~~L~ 345 (450)
. ..+...+.-.+...+.+++.+.+....|++ ....+- +.|+.+.|...+.. .+.+..-.++-+|.+|+
T Consensus 628 ~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 628 RLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred HHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 2 211111111222323455555555555555 222221 14555555554422 24456677888999999
Q ss_pred CChhhHHHHhccCCChHHHHHHHhcC
Q 041252 346 SLPEGKLALKDCANTIPNTVRLLMRV 371 (450)
Q Consensus 346 ~~~e~r~~i~~~~g~i~~Lv~lL~~~ 371 (450)
..+.+..++.. .-.+..+++.+...
T Consensus 704 t~~~~~~~~A~-~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 704 TVDASVIQLAK-NRSVDSIAKKLKEA 728 (745)
T ss_pred cccHHHHHHHH-hcCHHHHHHHHHHh
Confidence 88877777766 45678888777653
No 276
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=83.06 E-value=59 Score=33.30 Aligned_cols=186 Identities=15% Similarity=0.119 Sum_probs=111.6
Q ss_pred chHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccch----hHHHHHHHHhcc-Ch
Q 041252 234 KVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGI----LPGLSLLRSICL-LN 307 (450)
Q Consensus 234 ~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~----~~al~aL~~Ls~-~~ 307 (450)
.+..++.+..+ .+...+..++.++..|...-.... .-...+..+...+......... ....|....|.. ..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 56666666554 467778888888888863311111 0122334443333111122223 333344444442 11
Q ss_pred HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhh-------------HHHHhccCCChHHHHHHHhcCCh
Q 041252 308 EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEG-------------KLALKDCANTIPNTVRLLMRVSE 373 (450)
Q Consensus 308 ~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~-------------r~~i~~~~g~i~~Lv~lL~~~s~ 373 (450)
..- ...+..|+++|.+ +++...+...+..|... ++. |+.+.. -.+|.|++.....+.
T Consensus 267 ~~~-----~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 267 PLA-----TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEADD 337 (415)
T ss_pred chH-----HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhcCh
Confidence 111 1235578888875 66778888888887765 331 344433 468888888887777
Q ss_pred HHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 374 DCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 374 ~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
..+.+-+.+|..+-++-|...... --..++|.|++-+..+ ++.++..+...|+.+-..
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEE 395 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHc
Confidence 788999999999999888543211 1135778888888666 677888888888876554
No 277
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=82.99 E-value=0.27 Score=55.44 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=39.4
Q ss_pred CCCCeeeCcCCCCCCC-CCeeCCCCCcccHHHHHHHHhcCCCCCCCcC
Q 041252 65 EIPSVFVCPISLEPMQ-DPVTLCTGQTYERSNILKWFSLGRYTCPTTM 111 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~-dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~ 111 (450)
.+-.++.|+||.++|+ .=-+.-|||.||-.|++-|+.. +..||.|+
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 3444679999999999 5557789999999999999997 67899996
No 278
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=82.75 E-value=21 Score=28.66 Aligned_cols=72 Identities=25% Similarity=0.210 Sum_probs=56.2
Q ss_pred HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHH
Q 041252 270 IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILD 342 (450)
Q Consensus 270 ~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~ 342 (450)
+......+..|++..... +......++..|..|..++.....+.+.|++..|-++=+.-++..+...-.++.
T Consensus 25 l~~~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 25 LVKERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HccHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 345667888999988876 455788999999999999999999999999999777766556666665555544
No 279
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=82.69 E-value=6.9 Score=33.52 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=61.7
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHH---HHHHHHHHHHHHHhhcCC
Q 041252 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPV---LKQRSAELLKLCSLNYTD 436 (450)
Q Consensus 360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~---~k~~A~~lL~~ls~~~~~ 436 (450)
++..|-+-|.+.++.++..|+.+|-.+.+++......++.....+..|..++.+..... +|+++..++..-+..+++
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~ 122 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKS 122 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCC
Confidence 35577888888999999999999999999886666666666778888999887654544 899999999888777644
No 280
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.64 E-value=61 Score=35.96 Aligned_cols=210 Identities=14% Similarity=0.071 Sum_probs=115.3
Q ss_pred hHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHH-HHhc
Q 041252 208 VGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMR-LVKN 286 (450)
Q Consensus 208 v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~-lL~~ 286 (450)
++..++..|+.+.....-+..+...+.+......|++.+.-+--+|...+..|++..+ ..+++.|.. -.+.
T Consensus 743 ik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~dL~e~Y~s~ 814 (982)
T KOG4653|consen 743 IKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPDLSEEYLSE 814 (982)
T ss_pred chHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHHHHHHHHhc
Confidence 3444555555555444344455566777777777777766666666665555654321 233455555 2222
Q ss_pred CCC--ccchhHHHHHHHHhcc-ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh--hHHHHhccCCCh
Q 041252 287 KRH--PNGILPGLSLLRSICL-LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPE--GKLALKDCANTI 361 (450)
Q Consensus 287 ~~~--~~~~~~al~aL~~Ls~-~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e--~r~~i~~~~g~i 361 (450)
+.. ++.+-..-.|+.++.. -.+-...-.+ -.+...+..+++++...+..+++.|.+||.--. ....+.+ ..
T Consensus 815 k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e---v~ 890 (982)
T KOG4653|consen 815 KKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE---VL 890 (982)
T ss_pred ccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH---HH
Confidence 211 2333444466666652 2221111111 234556666777778889999999999996422 2223333 45
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHHhcccCchhHHHHHH---hcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252 362 PNTVRLLMR-VSEDCTQYALSILWSICKIAPEECSSAAV---DAGLAAKLFLVIQSGCNPVLKQRSAELLKLC 430 (450)
Q Consensus 362 ~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~~---~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~l 430 (450)
..++.+.+. ++..+++.|+-++..+-.... +..-.+. --.....+....+....+.+|-.|...+..+
T Consensus 891 ~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg-~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 891 QLILSLETTDGSVLVRRAAVHLLAELLNGTG-EDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHccCCchhhHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 555565554 567889999988887644333 2211111 2244455666666655666777766555443
No 281
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=82.11 E-value=7.9 Score=33.21 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=63.0
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHhhc
Q 041252 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS-----GCNPVLKQRSAELLKLCSLNY 434 (450)
Q Consensus 360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s-----~~~~~~k~~A~~lL~~ls~~~ 434 (450)
++..+.+-|.+.++.++-.|+.+|-.+.+++......++...+.+.-|+.++.. ..++.+|++...++..-+...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 466788888888999999999999999998876666777778888889988842 246899999999999877775
Q ss_pred CCC
Q 041252 435 TDT 437 (450)
Q Consensus 435 ~~~ 437 (450)
.+.
T Consensus 119 ~~~ 121 (139)
T cd03567 119 PHE 121 (139)
T ss_pred ccc
Confidence 543
No 282
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.07 E-value=84 Score=34.43 Aligned_cols=58 Identities=24% Similarity=0.299 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchh
Q 041252 162 KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES 225 (450)
Q Consensus 162 ~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~ 225 (450)
+...+..-++.++..+..++.-+.. .|..+..+|.+. +..+..+|.++|..|+.++..
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~lL~st-ssaV~fEaa~tlv~lS~~p~a 276 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEKAR-----YIRCIYNLLSST-SSAVIFEAAGTLVTLSNDPTA 276 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHhhH-----HHHHHHHHHhcC-CchhhhhhcceEEEccCCHHH
Confidence 3556777788888888766544333 377888999886 788999999999988877643
No 283
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=81.86 E-value=35 Score=36.28 Aligned_cols=121 Identities=14% Similarity=0.146 Sum_probs=76.2
Q ss_pred cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhhhhccCCCchHHHH
Q 041252 161 VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESKTNLMQPAKVSLLV 239 (450)
Q Consensus 161 ~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k~~i~~~g~i~~Lv 239 (450)
++...+.-|..-|....+.-++..+. ++..++.+.... +..++..|+..|-.++.+. +....+ +..|+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~ 102 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLV 102 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-S-SHHHHHHHHHHGGGG--T--T-HHHH-----HHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHH
Confidence 45667777888888888776665444 478889998875 7889999999999998863 333333 67788
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHh---cCCCccchhHHHHHHH
Q 041252 240 DMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK---NKRHPNGILPGLSLLR 301 (450)
Q Consensus 240 ~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~---~~~~~~~~~~al~aL~ 301 (450)
.+|.++++.....+-.+|..|...+. .+.+..|+.-+. .+ +..+++.++..|.
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~-de~~Re~~lkFl~ 158 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSG-DEQVRERALKFLR 158 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS--HHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccC-chHHHHHHHHHHH
Confidence 88998888888888888877754332 334455555554 22 4556666666553
No 284
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.38 E-value=58 Score=35.54 Aligned_cols=158 Identities=15% Similarity=0.080 Sum_probs=90.8
Q ss_pred CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHH
Q 041252 232 PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRS 311 (450)
Q Consensus 232 ~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~ 311 (450)
.++=+.+-+++...++-.|....-.+.. +-... +..+++..|+..--+..+.+++++|..+|.=++..+..
T Consensus 518 e~Ad~lI~el~~dkdpilR~~Gm~t~al-Ay~GT------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~-- 588 (929)
T KOG2062|consen 518 EDADPLIKELLRDKDPILRYGGMYTLAL-AYVGT------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE-- 588 (929)
T ss_pred hhhHHHHHHHhcCCchhhhhhhHHHHHH-HHhcc------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChh--
Confidence 3444555555555566666655444321 11111 12345666776633334677888888888877644332
Q ss_pred HHHhcCCHHHHHHhcCC-CChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 041252 312 LVVSIGAVPQLVELLPS-LDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIA 390 (450)
Q Consensus 312 ~iv~~G~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 390 (450)
.++..|++|+. .++-++-.++.+|..-|....++.++- .+.+|+ .....-+++-|+-++.-+....
T Consensus 589 ------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~----lLepl~---~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 589 ------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAIN----LLEPLT---SDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred ------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHH----HHhhhh---cChHHHHHHHHHHHHHHHHHhc
Confidence 23566677744 588999999999998888776666652 233333 3445677888877777654333
Q ss_pred chhHHHHHHh-cChHHHHHHHHHcC
Q 041252 391 PEECSSAAVD-AGLAAKLFLVIQSG 414 (450)
Q Consensus 391 ~~~~~~~~~~-~G~i~~L~~ll~s~ 414 (450)
.+.. .-+ .|....+..++...
T Consensus 656 t~~~---~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 656 TEQL---CPKVNGFRKQLEKVINDK 677 (929)
T ss_pred cccc---CchHHHHHHHHHHHhhhh
Confidence 2221 111 34555555666444
No 285
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=80.88 E-value=10 Score=32.24 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=60.1
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhhcC
Q 041252 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCN-PVLKQRSAELLKLCSLNYT 435 (450)
Q Consensus 360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~-~~~k~~A~~lL~~ls~~~~ 435 (450)
++..|-+-|.+.++.++..|+.+|-.+.+++......++...+.+..|..++..... +.+|+++..++..-+....
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 455677888888999999999999999998866666677777888889888866433 4489999998888777654
No 286
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.76 E-value=1.1 Score=43.98 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=36.3
Q ss_pred eeCcCCCCCCCCCeeCCCCCc-ccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 70 FVCPISLEPMQDPVTLCTGQT-YERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
-.|=||+.--+|-+++||-|. .|..|-+.---. +..||.||+++.
T Consensus 291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~ 336 (349)
T KOG4265|consen 291 KECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIE 336 (349)
T ss_pred CeeEEEecCCcceEEecchhhehhHhHHHHHHHh-hcCCCccccchH
Confidence 469999999999999999997 688886654322 567999999864
No 287
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=80.69 E-value=5.8 Score=41.93 Aligned_cols=119 Identities=21% Similarity=0.237 Sum_probs=66.5
Q ss_pred CccchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHH
Q 041252 289 HPNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVR 366 (450)
Q Consensus 289 ~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~ 366 (450)
+...+.-|+..+...- ..++-... ++.++++|..+.+..++..|+..|-.+|.. ++....+.+ .|++
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaD------vL~Q 103 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVAD------VLVQ 103 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHH------HHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHH------HHHH
Confidence 3555556655555554 23333222 456788888888889999999999999975 566666665 8999
Q ss_pred HHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHH---cCCCHHHHHHHHHHHH
Q 041252 367 LLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQ---SGCNPVLKQRSAELLK 428 (450)
Q Consensus 367 lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~---s~~~~~~k~~A~~lL~ 428 (450)
+|...++.-....-.+|..+-..++. |.+..+...+. ++ ++.+|+++...|+
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k---------~tL~~lf~~i~~~~~~-de~~Re~~lkFl~ 158 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPK---------GTLTGLFSQIESSKSG-DEQVRERALKFLR 158 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHH---HS--HHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHhcccC-chHHHHHHHHHHH
Confidence 99877655555555566555554431 22333333333 44 5667888766553
No 288
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.91 E-value=1.4 Score=47.78 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=36.0
Q ss_pred CCCeeeCcCCCCCCCCCee-CCCCCcccHHHHHHHHhcCCCCCCCcCC
Q 041252 66 IPSVFVCPISLEPMQDPVT-LCTGQTYERSNILKWFSLGRYTCPTTMQ 112 (450)
Q Consensus 66 ~p~~~~Cpi~~~~m~dPv~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~ 112 (450)
+-..-.|..|.-.+.=|++ ..|||.|-++|.+ .+...||.|.-
T Consensus 837 i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 837 IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 3344689999999999987 5799999999988 56788999964
No 289
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=79.81 E-value=2 Score=43.83 Aligned_cols=166 Identities=13% Similarity=0.053 Sum_probs=90.8
Q ss_pred cCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-----cChHHHHHHHhc-C-CHHHHHHhc---CCCChh
Q 041252 263 EKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-----LLNEVRSLVVSI-G-AVPQLVELL---PSLDPD 332 (450)
Q Consensus 263 ~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-----~~~~~~~~iv~~-G-~v~~Lv~lL---~~~~~~ 332 (450)
....+...+--..+.......|.++ .-+.++.+++++.|++ ..+..+..-.+. | -+..++..- ...+..
T Consensus 421 Hp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dk 499 (728)
T KOG4535|consen 421 HPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDK 499 (728)
T ss_pred ccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3434444333334455555555554 4667888999999886 112212111111 1 111222221 223568
Q ss_pred HHHHHHHHHHHhcCChh-----hHHHHhccCCChHHHHHH-HhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHH
Q 041252 333 CLQLALCILDALSSLPE-----GKLALKDCANTIPNTVRL-LMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAK 406 (450)
Q Consensus 333 ~~~~al~~L~~L~~~~e-----~r~~i~~~~g~i~~Lv~l-L~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~ 406 (450)
++.+|+.+|.|+..--. +-..+.+ |.+..+..- ...+..+++=+|+.++.||.++..-..+..-...-+++.
T Consensus 500 V~~navraLgnllQvlq~i~~~~~~e~~~--~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~ 577 (728)
T KOG4535|consen 500 VKSNAVRALGNLLQFLQPIEKPTFAEIIE--ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA 577 (728)
T ss_pred hhhHHHHHHhhHHHHHHHhhhccHHHHHH--HHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence 88999999998875311 1111111 222222211 122456889999999999988653111111123467888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252 407 LFLVIQSGCNPVLKQRSAELLKLCS 431 (450)
Q Consensus 407 L~~ll~s~~~~~~k~~A~~lL~~ls 431 (450)
|+.++.+..+-++|-+|+..|..-.
T Consensus 578 L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 578 LTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred HHHHHHHhccceEeehhhhhhcCCC
Confidence 8888877767788888887776543
No 290
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=79.53 E-value=66 Score=35.47 Aligned_cols=90 Identities=21% Similarity=0.074 Sum_probs=65.4
Q ss_pred HHHHhc-cChHHHHHHHhcCCHHHHHHhcCC-CChhHHHHHHHHHHHhcCChhhHHHHhccCCChH--HHHHHHhcCCh-
Q 041252 299 LLRSIC-LLNEVRSLVVSIGAVPQLVELLPS-LDPDCLQLALCILDALSSLPEGKLALKDCANTIP--NTVRLLMRVSE- 373 (450)
Q Consensus 299 aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~--~Lv~lL~~~s~- 373 (450)
+|+++. .+++++..+.+.|++..+.+.+.. ...+....+++.|.+++...+.+..... -.-+. .+-.++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~-~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMI-FEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHhhcchh
Confidence 889998 678899999999999999999964 4678999999999999987665544432 11121 23233333344
Q ss_pred HHHHHHHHHHHHhccc
Q 041252 374 DCTQYALSILWSICKI 389 (450)
Q Consensus 374 ~~~e~A~~~L~~L~~~ 389 (450)
+...+|+++|..+..+
T Consensus 573 ersY~~~siLa~ll~~ 588 (699)
T KOG3665|consen 573 ERSYNAASILALLLSD 588 (699)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 6677888888887665
No 291
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=78.21 E-value=0.75 Score=49.10 Aligned_cols=65 Identities=20% Similarity=0.366 Sum_probs=46.9
Q ss_pred CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHh--cCCCCCCCcCCcCCCCCCcchHHHHHHHHHH
Q 041252 68 SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFS--LGRYTCPTTMQELWDDSVTPNKTLYHLIHTW 132 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~--~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w 132 (450)
....||||.+...+|+.+.|-|.||+.|+-.-|. .+...||+|+..........-...-.++++.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence 3467999999999999999999999999888544 4455699998655444443333444555544
No 292
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=78.09 E-value=7.4 Score=36.46 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHhcCCCchhhhhccCCCc-------hHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCChh-hHhhhhhH
Q 041252 206 HAVGSEAVGVLVNLTLDSESKTNLMQPAK-------VSLLVDMLN-EGSVETKINCTRLIEKLMEEKDFRP-EIVSSHRL 276 (450)
Q Consensus 206 ~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~-------i~~Lv~lL~-~~~~~~~~~aa~~L~~La~~~~~~~-~~~~~~g~ 276 (450)
-..+..|+.+|..|+..+.|...|...+- +..|+++|. .+++-.|+-|..+|.+|+..++... .+..+.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 35789999999999999999988876553 333444444 4588999999999999987665544 34466778
Q ss_pred HHHHHHHHhcC
Q 041252 277 LIGLMRLVKNK 287 (450)
Q Consensus 277 l~~Lv~lL~~~ 287 (450)
+..|+.++.+.
T Consensus 218 i~~Li~FiE~a 228 (257)
T PF12031_consen 218 ISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999988763
No 293
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=78.08 E-value=10 Score=33.28 Aligned_cols=143 Identities=13% Similarity=0.085 Sum_probs=73.5
Q ss_pred hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhh
Q 041252 193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVS 272 (450)
Q Consensus 193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~ 272 (450)
.+.|+++|+...+..++.+++++|..|-.-|..+-...+.+.-.. . -...+..... ..+.+... .....+ .-
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~-~--~~~~~~~~~~---~~l~~~~~-~~~~ee-~y 83 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSK-S--SENSNDESTD---ISLPMMGI-SPSSEE-YY 83 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCcc-c--cccccccchh---hHHhhccC-CCchHH-HH
Confidence 567788888776788999999999988665554443222110000 0 0000111111 11111111 001111 22
Q ss_pred hhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHH-HHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHh
Q 041252 273 SHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRS-LVVSIGAVPQLVELLPSLDPDCLQLALCILDAL 344 (450)
Q Consensus 273 ~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~-~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L 344 (450)
..-++..|+++|++..-..-..++..++.++-.....+. ... .-++|.++..+++.+...+|..+.-|..|
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334678888888875322233355666655542221111 111 24678888888877667777766666555
No 294
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=77.99 E-value=90 Score=32.27 Aligned_cols=182 Identities=13% Similarity=0.150 Sum_probs=98.9
Q ss_pred HHHHHHHhhcc-chHHHHHHHHHHHHHHHHc-HHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 151 ASELLGTLKKV-KGQARVQALKELHQIAAAH-ASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 151 i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
+..++..++.. ..+.+..|+..|..+..+. -..++.-.. -.+..+++.|+.+.++..+..|+.+|..+..+... .
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~--~ 364 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA--R 364 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH--h
Confidence 44455555443 4457788998887776544 222332211 12456778888755778899999999987765432 2
Q ss_pred ccC--CCchHHHHHHhcCCCHHHHHHH-HHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252 229 LMQ--PAKVSLLVDMLNEGSVETKINC-TRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL 305 (450)
Q Consensus 229 i~~--~g~i~~Lv~lL~~~~~~~~~~a-a~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~ 305 (450)
+.+ .-+|..+++.-...+.++...| -.++.-|++....... ..+..++-.. +...-..++..+..|..
T Consensus 365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I--------~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e 435 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI--------VNISPLILTA-DEPRAVAVIKMLTKLFE 435 (516)
T ss_pred hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHH--------HHHhhHHhcC-cchHHHHHHHHHHHHHh
Confidence 332 3355566665555555444444 4456666655543221 2222222222 22223344444555542
Q ss_pred C--hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252 306 L--NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS 345 (450)
Q Consensus 306 ~--~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~ 345 (450)
. .+.-..++ ....|.+++--.+.+..++..|+..|-.+.
T Consensus 436 ~l~~EeL~~ll-~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 436 RLSAEELLNLL-PDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hcCHHHHHHhh-hhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 1 11111111 346777887777777888888887776654
No 295
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.93 E-value=7.2 Score=41.89 Aligned_cols=103 Identities=16% Similarity=-0.003 Sum_probs=73.1
Q ss_pred cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHH
Q 041252 316 IGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECS 395 (450)
Q Consensus 316 ~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~ 395 (450)
.|.+..|++-..+.+..++..++.+|+.+..+...+..-+- .+.+..+..-+....+.++-.|+-+|..+=....++
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence 35566677777888999999999999999985333333332 255566666666777899999999998875332211
Q ss_pred HHHHhcChHHHHHHHHHcCCCHHHHHHHHH
Q 041252 396 SAAVDAGLAAKLFLVIQSGCNPVLKQRSAE 425 (450)
Q Consensus 396 ~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~ 425 (450)
+..++..+..++|++.++++|+.|.-
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHHHH
Confidence 23566788899999989999887643
No 296
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=77.89 E-value=1.5 Score=49.17 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=37.8
Q ss_pred eeCcCCCCC-----CCCCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 70 FVCPISLEP-----MQDPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 70 ~~Cpi~~~~-----m~dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
-.|.||++- .-||-+++ ||+-.||.|.+-=.++|+..||.|+.++.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 469999975 44788875 99999999996657778999999998765
No 297
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=77.48 E-value=1.4 Score=42.16 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=35.3
Q ss_pred eeeCcCCCCCCC----CCeeCCCCCcccHHHHHHHHhcCCCCCCCcCC
Q 041252 69 VFVCPISLEPMQ----DPVTLCTGQTYERSNILKWFSLGRYTCPTTMQ 112 (450)
Q Consensus 69 ~~~Cpi~~~~m~----dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~ 112 (450)
++.||||.+.+. +|..++|||+--..|.++....+ ++||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 466999998765 57788999998888888877776 99999965
No 298
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=77.33 E-value=2.8 Score=40.80 Aligned_cols=59 Identities=17% Similarity=0.301 Sum_probs=43.9
Q ss_pred CCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHH
Q 041252 67 PSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTW 132 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w 132 (450)
.+-+-||||.+.|.-|+.= .-||.-|-+|=.+ -...||.|+.++.+ +.+.++.+.++.-
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCcccccccc---HHHHHHHHHHHhc
Confidence 3446799999999999754 3699999888432 25679999988863 3567777777665
No 299
>PLN02400 cellulose synthase
Probab=76.62 E-value=1.3 Score=49.85 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=37.3
Q ss_pred eeCcCCCCC-----CCCCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 70 FVCPISLEP-----MQDPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 70 ~~Cpi~~~~-----m~dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
-+|.||++- .-+|-+++ ||+-.||.|.|-=.++|+..||+|+.++.
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 389999975 44688875 99999999996556678999999998765
No 300
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=76.35 E-value=5.2 Score=35.91 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=24.7
Q ss_pred cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
-.-+..|.||-|+.- +||+ +.++ ..+.||.|+.+|..
T Consensus 112 e~~~~~Y~Cp~C~~r----------ytf~-----eA~~-~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 112 EENNMFFFCPNCHIR----------FTFD-----EAME-YGFRCPQCGEMLEE 148 (178)
T ss_pred ccCCCEEECCCCCcE----------EeHH-----HHhh-cCCcCCCCCCCCee
Confidence 345678999998742 2332 2333 37899999998865
No 301
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.75 E-value=58 Score=37.07 Aligned_cols=81 Identities=20% Similarity=0.149 Sum_probs=64.8
Q ss_pred HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhc---CChHHHHHHHHHH
Q 041252 308 EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMR---VSEDCTQYALSIL 383 (450)
Q Consensus 308 ~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~---~s~~~~e~A~~~L 383 (450)
..+.++..+|++..|++.+-...+..+-.-+..|..++.. |.|...... .|++..|++++.. ++...-.+|..++
T Consensus 899 pdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS-~gcvellleIiypflsgsspfLshalkIv 977 (2799)
T KOG1788|consen 899 PDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTS-AGCVELLLEIIYPFLSGSSPFLSHALKIV 977 (2799)
T ss_pred chHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhc-ccHHHHHHHHhhhhhcCCchHhhccHHHH
Confidence 3577899999999999998777888999999999999865 777777766 8999999998854 4556667777777
Q ss_pred HHhccc
Q 041252 384 WSICKI 389 (450)
Q Consensus 384 ~~L~~~ 389 (450)
.-||..
T Consensus 978 emLgay 983 (2799)
T KOG1788|consen 978 EMLGAY 983 (2799)
T ss_pred HHHhhc
Confidence 776643
No 302
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=75.74 E-value=68 Score=31.16 Aligned_cols=170 Identities=12% Similarity=0.053 Sum_probs=103.2
Q ss_pred CchHHHH-HHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-Ch-HH
Q 041252 233 AKVSLLV-DMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-LN-EV 309 (450)
Q Consensus 233 g~i~~Lv-~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~~-~~ 309 (450)
+.+..|+ ..+.+.++.+|+.|..+|.-.+--+... +...++.+...++.+ +..++..|+.++..+.. ++ +.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~-----a~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL-----AKEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence 3344444 5567889999999999998776544321 223466777777554 78889999999998872 22 11
Q ss_pred HHH-------HHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCC----hHHHHH
Q 041252 310 RSL-------VVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVS----EDCTQY 378 (450)
Q Consensus 310 ~~~-------iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s----~~~~e~ 378 (450)
-.. .-....+..+...|.+.+++++..|+..++.|--+..... . ...+..|+-+-++.+ ...++.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~-~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---P-PKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---H-HHHHHHHHHHHcCcccCCcHHHHHH
Confidence 111 1124567778888888888999999988888764432211 0 223334544444432 344443
Q ss_pred HHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcC
Q 041252 379 ALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSG 414 (450)
Q Consensus 379 A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~ 414 (450)
-...+-..|..++ +. +..+..+.++.+..+....
T Consensus 176 L~~Ffp~y~~s~~-~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSP-EN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCH-HH-HHHHHHHHHHHHHHHHhCc
Confidence 3333444555554 22 4556667778877777554
No 303
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=75.67 E-value=3.1 Score=36.05 Aligned_cols=42 Identities=21% Similarity=0.367 Sum_probs=24.6
Q ss_pred ccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHh-cCCCCCCCcCCcCCC
Q 041252 63 LAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFS-LGRYTCPTTMQELWD 116 (450)
Q Consensus 63 ~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~-~~~~~cP~~~~~l~~ 116 (450)
...-...|.||-|+. +|.-.-...... .+.+.||.|+.++..
T Consensus 93 ~e~~~~~Y~Cp~C~~------------~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 93 DETNNAYYKCPNCQS------------KYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred cccCCcEEECcCCCC------------EeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 345567899996554 444222222211 245889999988743
No 304
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=75.48 E-value=52 Score=35.85 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=44.2
Q ss_pred CHHHHHHh-cCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhc-CChHHHHHHHHHHHHhcccCchhHH
Q 041252 318 AVPQLVEL-LPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMR-VSEDCTQYALSILWSICKIAPEECS 395 (450)
Q Consensus 318 ~v~~Lv~l-L~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~ 395 (450)
+|..|+.. .++.+.+++..|+-+|.-++-. +....|..|++|.. +++-++--|+-+|--.|......
T Consensus 555 air~lLh~aVsD~nDDVrRaAVialGFVl~~---------dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-- 623 (929)
T KOG2062|consen 555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFR---------DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-- 623 (929)
T ss_pred hHHHhhcccccccchHHHHHHHHHheeeEec---------ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH--
Confidence 34444444 3444555555555555544321 12344555555543 34555555555555444433211
Q ss_pred HHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041252 396 SAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKL 429 (450)
Q Consensus 396 ~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ 429 (450)
+ ++. |+.-|-++...-+|+.|...+.+
T Consensus 624 -e-----Ai~-lLepl~~D~~~fVRQgAlIa~am 650 (929)
T KOG2062|consen 624 -E-----AIN-LLEPLTSDPVDFVRQGALIALAM 650 (929)
T ss_pred -H-----HHH-HHhhhhcChHHHHHHHHHHHHHH
Confidence 1 122 22333334356677777665555
No 305
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.48 E-value=1.1e+02 Score=32.69 Aligned_cols=101 Identities=15% Similarity=0.121 Sum_probs=71.0
Q ss_pred cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHH
Q 041252 316 IGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECS 395 (450)
Q Consensus 316 ~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~ 395 (450)
.|.+..+++-+.+.+..++..++.+|+.++.+-.--....- .|.+..|.+-+....+.++..|+.+|..+-....++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~-N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-- 166 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLA-NGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-- 166 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh--
Confidence 46677788888889999999999999999877333233332 266777777777777888998998887664332211
Q ss_pred HHHHhcChHHHHHHHHHcCCCHHHHHHH
Q 041252 396 SAAVDAGLAAKLFLVIQSGCNPVLKQRS 423 (450)
Q Consensus 396 ~~~~~~G~i~~L~~ll~s~~~~~~k~~A 423 (450)
+.-....|+.++|++.+.++|+.|
T Consensus 167 ----en~~~n~l~~~vqnDPS~EVRr~a 190 (885)
T COG5218 167 ----ENRIVNLLKDIVQNDPSDEVRRLA 190 (885)
T ss_pred ----HHHHHHHHHHHHhcCcHHHHHHHH
Confidence 123445788899998777777664
No 306
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=75.38 E-value=89 Score=30.92 Aligned_cols=160 Identities=14% Similarity=0.236 Sum_probs=105.1
Q ss_pred hHHHHhhhCCCCChhhHHHHHHHHHhcCC-Cc-hhhhhccC--CCchHHHHHHhcCC-----C--------HHHHHHHHH
Q 041252 193 VALISSLLGPFTSHAVGSEAVGVLVNLTL-DS-ESKTNLMQ--PAKVSLLVDMLNEG-----S--------VETKINCTR 255 (450)
Q Consensus 193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~-~~k~~i~~--~g~i~~Lv~lL~~~-----~--------~~~~~~aa~ 255 (450)
++.+-+.|.+. .......++..|.++.. +. .....+.. .-..+.+.+++... . +.+|.+...
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 56666777665 45666678888888766 33 22223322 12334444444211 1 278888888
Q ss_pred HHHHHhc--cCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHH-hcc----ChHHHHHHHhcCCHHHHHHhcCC
Q 041252 256 LIEKLME--EKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRS-ICL----LNEVRSLVVSIGAVPQLVELLPS 328 (450)
Q Consensus 256 ~L~~La~--~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~-Ls~----~~~~~~~iv~~G~v~~Lv~lL~~ 328 (450)
.+..+.. +...+.+++...+.+..+++-+..+ +++++...+.+|+. +-. ....|..+....++..|+.+...
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence 8777643 3334566667777788888877764 57788888888884 432 23467777788899999998766
Q ss_pred CCh----hHHHHHHHHHHHhcCChhhHHHH
Q 041252 329 LDP----DCLQLALCILDALSSLPEGKLAL 354 (450)
Q Consensus 329 ~~~----~~~~~al~~L~~L~~~~e~r~~i 354 (450)
.++ .+.+.+-..|..+|.++..--.+
T Consensus 216 ~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f 245 (330)
T PF11707_consen 216 DGEDEKSSVADLVHEFLLALCTDPKHGVCF 245 (330)
T ss_pred cCCcccchHHHHHHHHHHHHhcCCCccccc
Confidence 666 89999999999999876543333
No 307
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=75.12 E-value=1.5e+02 Score=33.31 Aligned_cols=190 Identities=13% Similarity=0.102 Sum_probs=114.7
Q ss_pred HhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc--cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhh
Q 041252 197 SSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL--MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSH 274 (450)
Q Consensus 197 v~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i--~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~ 274 (450)
+..+.....+.++-.|+.++..-+. ...+ ..++.+.-|..+....+.++......+|...+..+..-.. ..+.
T Consensus 496 v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~s 570 (1005)
T KOG2274|consen 496 VNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMES 570 (1005)
T ss_pred HHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhc
Confidence 3444333344555556666554441 1111 2367777777777666777777777777777655543222 2334
Q ss_pred hHHHHHHHHHhc-CCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCC----hhHHHHHHHHHHHhcCC--
Q 041252 275 RLLIGLMRLVKN-KRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLD----PDCLQLALCILDALSSL-- 347 (450)
Q Consensus 275 g~l~~Lv~lL~~-~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~----~~~~~~al~~L~~L~~~-- 347 (450)
.+.|..+.+... ..+|.+...+-.++..|+....+...+.+ -.+|.++..|...+ .....-++.+|..+..+
T Consensus 571 kI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp 649 (1005)
T KOG2274|consen 571 KICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP 649 (1005)
T ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC
Confidence 455655555433 34676666777778888765555544444 37899999997654 56777777777766544
Q ss_pred hhhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccCchhH
Q 041252 348 PEGKLALKDCANTIPNTVRLLMRV-SEDCTQYALSILWSICKIAPEEC 394 (450)
Q Consensus 348 ~e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~~~ 394 (450)
+.--..+.. -+.|++.+...+. ....-++|-.+|..+-..+.++.
T Consensus 650 ~pL~~~l~~--~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~ 695 (1005)
T KOG2274|consen 650 SPLPNLLIC--YAFPAVAKITLHSDDHETLQNATECLRALISVTLEQL 695 (1005)
T ss_pred CCccHHHHH--HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHH
Confidence 222233332 4788888887553 45677788888888777665543
No 308
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=74.49 E-value=3.6 Score=36.16 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=25.0
Q ss_pred cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCC
Q 041252 64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDD 117 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 117 (450)
..=+..|.||-|+. .| ...+.++. .++||.|+.+|...
T Consensus 104 e~~~~~Y~Cp~c~~------------r~---tf~eA~~~-~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 104 ETNNMFFICPNMCV------------RF---TFNEAMEL-NFTCPRCGAMLDYL 141 (158)
T ss_pred ccCCCeEECCCCCc------------Ee---eHHHHHHc-CCcCCCCCCEeeec
Confidence 45577899998873 22 12333343 69999999987543
No 309
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=74.15 E-value=35 Score=31.76 Aligned_cols=98 Identities=17% Similarity=0.084 Sum_probs=74.9
Q ss_pred chhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCC-----CChhHHHHHHHHHHHhcCC--hhhHHHHhccCCChHHH
Q 041252 292 GILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPS-----LDPDCLQLALCILDALSSL--PEGKLALKDCANTIPNT 364 (450)
Q Consensus 292 ~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~-----~~~~~~~~al~~L~~L~~~--~e~r~~i~~~~g~i~~L 364 (450)
-.-+++..|.-++++++.|..++++..--.|...|.. .-+-++-.+++++..|..+ ++....+.. ...+|..
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLlt-TeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLT-TEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHh-hhHHHHH
Confidence 3458888899999999999999998765555555522 1356788899999999977 334445555 6899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcccC
Q 041252 365 VRLLMRVSEDCTQYALSILWSICKIA 390 (450)
Q Consensus 365 v~lL~~~s~~~~e~A~~~L~~L~~~~ 390 (450)
++++..+|+..+..|+-++-.+-.++
T Consensus 195 LrIme~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99999999988888888877665544
No 310
>PF14353 CpXC: CpXC protein
Probab=73.84 E-value=1.9 Score=36.35 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=30.0
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcC--CCCCCCcCCcC
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLG--RYTCPTTMQEL 114 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~--~~~cP~~~~~l 114 (450)
+.+||-|+..+.-.+-..=.-.-+....++-+... ..+||.|+..+
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKF 48 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCce
Confidence 35799999998876643333344555556655421 35799999864
No 311
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=73.81 E-value=34 Score=38.08 Aligned_cols=146 Identities=16% Similarity=0.131 Sum_probs=89.7
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh-hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-ChHHH
Q 041252 233 AKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV-SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-LNEVR 310 (450)
Q Consensus 233 g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~-~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~~~~~ 310 (450)
..+|.+++.........|.+-..+|.++-..-+ ...+. .-..++|.|++-|.-. +..++..++.+|.-+-. ++.-.
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhHHHHhccccc
Confidence 467888887775566667776666666644222 22222 2234677777777665 67777777777766542 22111
Q ss_pred HHHHhcCCHHHHHHhcCCCC---hhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHH
Q 041252 311 SLVVSIGAVPQLVELLPSLD---PDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSI 382 (450)
Q Consensus 311 ~~iv~~G~v~~Lv~lL~~~~---~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~ 382 (450)
..=+ .-.||.++.+=++.+ .-+++.|+..|..|.. .|..+-.-.. ...|..|.+.|.+....+++.|+.+
T Consensus 945 t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr-~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR-PLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc-HHHHHHhhhccCcHHHHHHHHHHHH
Confidence 1111 124566665555444 5789999999999998 5665555444 4677788888877666677776654
No 312
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=73.69 E-value=2.4 Score=34.32 Aligned_cols=52 Identities=15% Similarity=0.298 Sum_probs=31.0
Q ss_pred CCeeeCcCCCCCCCCCeeCC-CC-----CcccHHHHHHHHhcCCCCCCCcCCcCCCCCC
Q 041252 67 PSVFVCPISLEPMQDPVTLC-TG-----QTYERSNILKWFSLGRYTCPTTMQELWDDSV 119 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~~-~g-----~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 119 (450)
.+++.|||+.++-..=|-+. .+ .-|+..++.+-...|.. =|.+|++++...+
T Consensus 38 ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~-HPLSREpit~sMI 95 (113)
T PF06416_consen 38 EEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAP-HPLSREPITPSMI 95 (113)
T ss_dssp CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTTE
T ss_pred HHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCC-CCCccCCCChhhE
Confidence 35679999999988888543 22 34999999999987543 3889888876544
No 313
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=73.66 E-value=40 Score=37.58 Aligned_cols=182 Identities=18% Similarity=0.137 Sum_probs=103.7
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHH---HHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252 153 ELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVAL---ISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL 229 (450)
Q Consensus 153 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~---Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i 229 (450)
.+...+.+.+...|..|+..+.....+.. .....|.... ++.......+..+...|+..|-.++..-.....=
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 34455667778899999999988875422 2223333333 3333332224456666666666655421100111
Q ss_pred cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cCh-
Q 041252 230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLN- 307 (450)
Q Consensus 230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~- 307 (450)
...+..+.+.+-+...-..++..+..++....... .-...++..+..++++ +|.........+...- ..+
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~-------~l~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNST-------PLSKMSEAILEALKGK-NPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcCC
Confidence 12456777777777667777777777766554321 1123456667777776 5666655544443332 222
Q ss_pred HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252 308 EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS 346 (450)
Q Consensus 308 ~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~ 346 (450)
.+...-.-.+.++.++....+.+.+++..|..++..+-.
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 111111223567788888888889999988888876654
No 314
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.29 E-value=1.7e+02 Score=34.75 Aligned_cols=108 Identities=11% Similarity=0.119 Sum_probs=73.2
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh-hhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHH
Q 041252 233 AKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR-PEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVR 310 (450)
Q Consensus 233 g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~-~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~ 310 (450)
+.+..++..|.+..+.+|..|..+|.++.+.+... ..--...++...+ .+. +..++++|+..+..-. .+++..
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~----~Ds-sasVREAaldLvGrfvl~~~e~~ 890 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRL----NDS-SASVREAALDLVGRFVLSIPELI 890 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhh----ccc-hhHHHHHHHHHHhhhhhccHHHH
Confidence 45888899999889999999999999997665431 1111223333333 332 5778889998887554 455544
Q ss_pred HHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhh
Q 041252 311 SLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEG 350 (450)
Q Consensus 311 ~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~ 350 (450)
.+.- ..+.+-+.+....++..++++|+.+|.....
T Consensus 891 ~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 891 FQYY-----DQIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred HHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 3333 2455555667788999999999999976433
No 315
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=72.89 E-value=3 Score=47.22 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=30.2
Q ss_pred cCCCCeeeCcCCC--CCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 64 AEIPSVFVCPISL--EPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 64 ~~~p~~~~Cpi~~--~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
-++|.|+.||-|+ ++..|+-+ .+|+-. -...||.|+.++..
T Consensus 909 NPL~PHY~Cp~Cky~Ef~~d~sv-gsGfDL-----------pdK~CPkCg~pl~k 951 (1444)
T COG2176 909 NPLPPHYLCPECKYSEFIDDGSV-GSGFDL-----------PDKDCPKCGTPLKK 951 (1444)
T ss_pred CCCCccccCCCCceeeeecCCCc-CCCCCC-----------CCCCCCcCCCcccc
Confidence 3889999999998 67777733 344332 35789999998754
No 316
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=72.82 E-value=21 Score=34.05 Aligned_cols=137 Identities=18% Similarity=0.180 Sum_probs=83.5
Q ss_pred CccchhHHHHHHHHhccChHHHHHHHhc-C-CHHHHHHhcCCC----ChhHHHHHHHHHHHhcCChhhHHHHhc-cCCCh
Q 041252 289 HPNGILPGLSLLRSICLLNEVRSLVVSI-G-AVPQLVELLPSL----DPDCLQLALCILDALSSLPEGKLALKD-CANTI 361 (450)
Q Consensus 289 ~~~~~~~al~aL~~Ls~~~~~~~~iv~~-G-~v~~Lv~lL~~~----~~~~~~~al~~L~~L~~~~e~r~~i~~-~~g~i 361 (450)
.+..+.-++++|.|+-.++..+..+.+. + .+...+..+... +..++-.+..++.|++..-.....-.+ ....+
T Consensus 123 ~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll 202 (268)
T PF08324_consen 123 PPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELL 202 (268)
T ss_dssp SHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 3445668889999998888888888763 3 444444444443 688889999999999853111110000 00123
Q ss_pred HHHHHHHhc--CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHH
Q 041252 362 PNTVRLLMR--VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAEL 426 (450)
Q Consensus 362 ~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~l 426 (450)
..+++.+.. .++++.-.++-+|.++....+ .....+...|+...+......+..++.|+.+.++
T Consensus 203 ~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~-~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 203 SSIIEVLSREESDEEALYRLLVALGTLLSSSD-SAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSH-HHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHhccCh-hHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 445553332 367788888888888885543 3333322356666666666566678888877654
No 317
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=72.50 E-value=1.5 Score=40.41 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=35.1
Q ss_pred eeeCcCCC-CCCCCCee----CC-CCCcccHHHHHHHHhcCCCCCC--CcCC
Q 041252 69 VFVCPISL-EPMQDPVT----LC-TGQTYERSNILKWFSLGRYTCP--TTMQ 112 (450)
Q Consensus 69 ~~~Cpi~~-~~m~dPv~----~~-~g~ty~r~~I~~~~~~~~~~cP--~~~~ 112 (450)
+-.||+|+ +.+-+|-+ -| |=|..|-+|..+-|..|...|| -|+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 45699999 56666642 34 9999999999999999999999 5543
No 318
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=72.04 E-value=9.5 Score=34.05 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=33.4
Q ss_pred cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCc-chHHHHHHHHHHHH
Q 041252 64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT-PNKTLYHLIHTWFS 134 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~-~n~~L~~~I~~w~~ 134 (450)
..-+..|.||.|.- |....+.+.. .++||.|+..+...+-. -...+.+.|+....
T Consensus 108 ~~~~~~y~C~~~~~---------------r~sfdeA~~~-~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~ 163 (176)
T COG1675 108 ETENNYYVCPNCHV---------------KYSFDEAMEL-GFTCPKCGEDLEEYDSSEEIEELESELDELEE 163 (176)
T ss_pred hccCCceeCCCCCC---------------cccHHHHHHh-CCCCCCCCchhhhccchHHHHHHHHHHHHHHH
Confidence 35567899998875 2233455554 48999999987643332 23345555555443
No 319
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=71.77 E-value=3.6 Score=28.98 Aligned_cols=28 Identities=25% Similarity=0.596 Sum_probs=23.2
Q ss_pred eeCcCCCCCC--CCCeeCC--CCCcccHHHHH
Q 041252 70 FVCPISLEPM--QDPVTLC--TGQTYERSNIL 97 (450)
Q Consensus 70 ~~Cpi~~~~m--~dPv~~~--~g~ty~r~~I~ 97 (450)
-.||+|++.+ .|.++.. ||-.|=|+|.+
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 4699999999 7888764 99999999843
No 320
>PRK14707 hypothetical protein; Provisional
Probab=71.72 E-value=2.6e+02 Score=34.72 Aligned_cols=212 Identities=19% Similarity=0.177 Sum_probs=110.3
Q ss_pred HHHHHHHhhc-cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHh-cCCCchhhhh
Q 041252 151 ASELLGTLKK-VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVN-LTLDSESKTN 228 (450)
Q Consensus 151 i~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~-Ls~~~~~k~~ 228 (450)
+..++..|++ +....-..|+..|..-..++++.++.+-..| |.-++.-|+...+..+...++..|.. ++.+.+-++.
T Consensus 375 ~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~ 453 (2710)
T PRK14707 375 VSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQG-VSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKA 453 (2710)
T ss_pred HHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhh-HHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhh
Confidence 4456666666 4455677788888777778888888876666 56666667666567777788888877 6666565554
Q ss_pred ccCCCchHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc--
Q 041252 229 LMQPAKVSLLVDMLNE--GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-- 304 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~--~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-- 304 (450)
+ ++..|...+..|+. .++-.+..|-.+...|+.+.+. ...+....+...|=.+-+- |+ ...+..++..|+
T Consensus 454 ~-~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l-~~a~~~q~~~~~L~aLSK~---Pd-~~~c~~A~~~lA~r 527 (2710)
T PRK14707 454 L-DPINVTQALDALSKWPDTPICGQTASALAARLAHERRL-RKALKPQEVVIALHSLSKW---PD-TPICAEAASALAER 527 (2710)
T ss_pred c-ChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHH-HhhcCHHHHHHHHHHhhcC---CC-cHHHHHHHHHHHHH
Confidence 4 33335555555542 3455555555555666644432 3334444433333222221 21 123333333333
Q ss_pred --cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcC
Q 041252 305 --LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRV 371 (450)
Q Consensus 305 --~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~ 371 (450)
....-...+-..++.-.+=.+-+..+....+.+...|..+... +..+..+- +-.|..++..|+..
T Consensus 528 l~~~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~--aq~Vs~llNaLSKW 595 (2710)
T PRK14707 528 VVDELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLH--RQGVVIVLNALSKW 595 (2710)
T ss_pred hccchhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhh--hhHHHHHHHhhccC
Confidence 2222222111112222222222334455555555556555433 33333442 45677777777664
No 321
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=71.72 E-value=22 Score=30.53 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=59.6
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHH-cHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcC
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAA-HASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLT 220 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls 220 (450)
..+..|...|++.++.++..|+..|..++++ .......+.+.+.+..|+.++....+..++..++.++.+-+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 4567788889899999999999999999987 35577788888889999999976556789999998888754
No 322
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=71.51 E-value=80 Score=35.33 Aligned_cols=174 Identities=13% Similarity=0.092 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHH
Q 041252 244 EGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLV 323 (450)
Q Consensus 244 ~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv 323 (450)
+.+-.-|..|..-+....+... ....-...|.+..+++....+.+.++...++..|..|+.--..-..=...++.+.++
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~ll 342 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLL 342 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHH
Confidence 4455566666655555544332 111123345566666665554456677788888888873211112222346788888
Q ss_pred HhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchh-HHHHHHhcC
Q 041252 324 ELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEE-CSSAAVDAG 402 (450)
Q Consensus 324 ~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~-~~~~~~~~G 402 (450)
+-+.+....+++.++.++...+.... - .-.++.+...+.++++..+......+.......... .-...+ .+
T Consensus 343 d~lkekk~~l~d~l~~~~d~~~ns~~-l------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~-~~ 414 (815)
T KOG1820|consen 343 DRLKEKKSELRDALLKALDAILNSTP-L------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV-KT 414 (815)
T ss_pred HHhhhccHHHHHHHHHHHHHHHhccc-H------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH-HH
Confidence 88887788888888888887765210 0 123455666677777777766555554433322211 111111 23
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHH
Q 041252 403 LAAKLFLVIQSGCNPVLKQRSAELL 427 (450)
Q Consensus 403 ~i~~L~~ll~s~~~~~~k~~A~~lL 427 (450)
+++.++..... +...+|.+|.+.+
T Consensus 415 l~p~~~~~~~D-~~~~VR~Aa~e~~ 438 (815)
T KOG1820|consen 415 LVPHLIKHIND-TDKDVRKAALEAV 438 (815)
T ss_pred HhHHHhhhccC-CcHHHHHHHHHHH
Confidence 44545444433 3566666665543
No 323
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=71.41 E-value=24 Score=26.64 Aligned_cols=67 Identities=9% Similarity=0.027 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcC
Q 041252 250 KINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIG 317 (450)
Q Consensus 250 ~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G 317 (450)
.+.|.+++.++++.+... ..+...++++.++++........++-.+.-+|.-++.+.+....+-+.|
T Consensus 4 lKaaLWaighIgss~~G~-~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGI-QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHH-HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 456888999997765443 3455678999999998876567778888899999999998888777766
No 324
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.36 E-value=1.5e+02 Score=32.40 Aligned_cols=113 Identities=14% Similarity=0.076 Sum_probs=68.3
Q ss_pred hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CCChhhHh
Q 041252 193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEE-KDFRPEIV 271 (450)
Q Consensus 193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~-~~~~~~~~ 271 (450)
+..+++-..+. +..++...+.+|.-++........-+-.+....+..-|....+.+|..|..+|..+-.+ .+...
T Consensus 87 f~hlLRg~Esk-dk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~--- 162 (892)
T KOG2025|consen 87 FYHLLRGTESK-DKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC--- 162 (892)
T ss_pred HHHHHhcccCc-chhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc---
Confidence 44455555454 67899999999988776222222222234455555566667889999999999999522 22221
Q ss_pred hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHh
Q 041252 272 SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVS 315 (450)
Q Consensus 272 ~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~ 315 (450)
.+...++.+++...+++++.++ |.|++.++.....+++
T Consensus 163 ---~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 163 ---PVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVE 200 (892)
T ss_pred ---cHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHH
Confidence 2235566666665567777665 5667766555444443
No 325
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=71.14 E-value=99 Score=29.58 Aligned_cols=198 Identities=17% Similarity=0.182 Sum_probs=108.8
Q ss_pred CChHHHHhhhCCCC-ChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChh-
Q 041252 191 GGVALISSLLGPFT-SHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRP- 268 (450)
Q Consensus 191 G~i~~Lv~lL~~~~-~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~- 268 (450)
.+++.|+..|.... ...++.+|..+|-++- + +..++.+-+..+....++++-+..+|..+-..+..-+
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~ 136 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI 136 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc
Confidence 45788887776432 3446667777776543 2 3345555565655567777777777777621110000
Q ss_pred ----hHhh-------hhhHHHHHHHHHhcCCCccch-hHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHH
Q 041252 269 ----EIVS-------SHRLLIGLMRLVKNKRHPNGI-LPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQL 336 (450)
Q Consensus 269 ----~~~~-------~~g~l~~Lv~lL~~~~~~~~~-~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~ 336 (450)
-... ..+-+..|-..|.+...+... ..+.-.|+|+-... +|-+|++=+..++.-.+..
T Consensus 137 ~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee----------aI~al~~~l~~~SalfrhE 206 (289)
T KOG0567|consen 137 ANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEE----------AINALIDGLADDSALFRHE 206 (289)
T ss_pred cccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHH----------HHHHHHHhcccchHHHHHH
Confidence 0000 011122232223222112111 12223333332211 3445566666666677777
Q ss_pred HHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC--ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcC
Q 041252 337 ALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV--SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSG 414 (450)
Q Consensus 337 al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~--s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~ 414 (450)
+..++..|-+ .-+||.|.+.|... .+.++..|+.+|..++.. + .+..|...+...
T Consensus 207 vAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---~---------~~~vL~e~~~D~ 263 (289)
T KOG0567|consen 207 VAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE---D---------CVEVLKEYLGDE 263 (289)
T ss_pred HHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---H---------HHHHHHHHcCCc
Confidence 8888877754 45788888888775 467888888888777552 2 244555666555
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 041252 415 CNPVLKQRSAELLKLCSL 432 (450)
Q Consensus 415 ~~~~~k~~A~~lL~~ls~ 432 (450)
.+.+++.+.-.|-++..
T Consensus 264 -~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 264 -ERVVRESCEVALDMLEY 280 (289)
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 57778887777776543
No 326
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=70.83 E-value=57 Score=28.68 Aligned_cols=107 Identities=14% Similarity=0.167 Sum_probs=67.6
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCC--hHHHHhhhCCCCChhhHHHHHHHHHhcC----CCch
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGG--VALISSLLGPFTSHAVGSEAVGVLVNLT----LDSE 224 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~--i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls----~~~~ 224 (450)
...+...|++.+.+.|-.++.-+...+..++ .+.+.+.|. +..|+.+|+..++..+.+.++.+|..+- ..++
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4456777888888888888888888876532 466656554 6788899988656677777777776643 2334
Q ss_pred hhhhccC---CCchHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 041252 225 SKTNLMQ---PAKVSLLVDMLNEGSVETKINCTRLIEKLM 261 (450)
Q Consensus 225 ~k~~i~~---~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La 261 (450)
..+.+.. ++.++.++.+++. ......+..+|..|.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 3334433 3455566665543 344455555665554
No 327
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.62 E-value=4.9 Score=40.22 Aligned_cols=61 Identities=21% Similarity=0.416 Sum_probs=40.0
Q ss_pred CCCCeeeCcCCCCCCCC---CeeCCCCCcccHHHHHHHHhc----CC---CCCCCcCCcCCCCCCcchHHHHHHH
Q 041252 65 EIPSVFVCPISLEPMQD---PVTLCTGQTYERSNILKWFSL----GR---YTCPTTMQELWDDSVTPNKTLYHLI 129 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~d---Pv~~~~g~ty~r~~I~~~~~~----~~---~~cP~~~~~l~~~~l~~n~~L~~~I 129 (450)
-+...|.|.||.+-..- =+-++|+|.||++|...++.. |. -.||.++.+ ....|+ .+++++
T Consensus 180 F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~---~~a~~g-~vKelv 250 (445)
T KOG1814|consen 180 FVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG---SVAPPG-QVKELV 250 (445)
T ss_pred HHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc---ccCCch-HHHHHH
Confidence 44567999999975443 335799999999999999863 22 247776532 233333 455554
No 328
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=70.28 E-value=13 Score=29.36 Aligned_cols=72 Identities=15% Similarity=0.081 Sum_probs=53.6
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchh
Q 041252 320 PQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEE 393 (450)
Q Consensus 320 ~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~ 393 (450)
...+..|.++.+.++..++..|+.|..... ..+..-.+.+..+...|....+-+--+|+..|..++...++.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 345666788888999999999999987655 222221356667777777777889999999999998877643
No 329
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.05 E-value=1.9e+02 Score=32.36 Aligned_cols=182 Identities=14% Similarity=0.115 Sum_probs=100.2
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM 230 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~ 230 (450)
..+.+..+.++....|..++..|+.+.... .....+...+++...+..|+.. +.=+--+|+..+..|+.- .
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~Lkde-dsyvyLnaI~gv~~Lcev-------y 799 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDE-DSYVYLNAIRGVVSLCEV-------Y 799 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhccc-CceeeHHHHHHHHHHHHh-------c
Confidence 455666666677778999999999998643 3445566778889999999876 445666777766555532 2
Q ss_pred CCCchHHHHH-HhcCC---CHHHHHHHHHHHHHHhcc-CCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252 231 QPAKVSLLVD-MLNEG---SVETKINCTRLIEKLMEE-KDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL 305 (450)
Q Consensus 231 ~~g~i~~Lv~-lL~~~---~~~~~~~aa~~L~~La~~-~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~ 305 (450)
....++.+.+ ..++. ..+.+...-.++.+++.. ++..... -.-++..-++.++++ +...+..+++.|.+||.
T Consensus 800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y--~~~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY--KAVLINTFLSGVREP-DHEFRASSLANLGQLCQ 876 (982)
T ss_pred chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH--HHHHHHHHHHhcCCc-hHHHHHhHHHHHHHHHH
Confidence 2344666666 33322 123333333555555321 1111100 012333334444432 33346777788888873
Q ss_pred ChHHH--HHHHhcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcC
Q 041252 306 LNEVR--SLVVSIGAVPQLVELL-PSLDPDCLQLALCILDALSS 346 (450)
Q Consensus 306 ~~~~~--~~iv~~G~v~~Lv~lL-~~~~~~~~~~al~~L~~L~~ 346 (450)
-...+ .-+. .++..++.+. .+++.-++..|+-++..+-.
T Consensus 877 ~~a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 877 LLAFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHhhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 22211 1111 2333344444 34566777778777776654
No 330
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.61 E-value=65 Score=36.94 Aligned_cols=142 Identities=15% Similarity=0.073 Sum_probs=99.9
Q ss_pred chHHHHHHhc----CCCHHHHHHHHHHHHHHhccC-CChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH
Q 041252 234 KVSLLVDMLN----EGSVETKINCTRLIEKLMEEK-DFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE 308 (450)
Q Consensus 234 ~i~~Lv~lL~----~~~~~~~~~aa~~L~~La~~~-~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~ 308 (450)
..|.+++..+ .++++.+..|.-+|..++--+ +.+ ..-++.|+.++....++-++.++.-++..++..-.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc------es~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC------ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH------HHHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 3566666663 347999999999999885322 221 23468899999865578888899999998885433
Q ss_pred HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252 309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK 388 (450)
Q Consensus 309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 388 (450)
|- ++. --+.|.+.|.+.++.+++.|+.+|.+|-.++-.| - -|-++.+..+|....+.+..-|-...-.|+.
T Consensus 994 nl---ie~-~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK----V-KGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 994 NL---IEP-WTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK----V-KGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred cc---cch-hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH----h-cccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 31 111 1246888889999999999999999998654322 2 4778888888888888887777755555544
Q ss_pred cC
Q 041252 389 IA 390 (450)
Q Consensus 389 ~~ 390 (450)
..
T Consensus 1065 k~ 1066 (1251)
T KOG0414|consen 1065 KG 1066 (1251)
T ss_pred cc
Confidence 33
No 331
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=68.50 E-value=2.6 Score=40.51 Aligned_cols=27 Identities=11% Similarity=0.469 Sum_probs=19.7
Q ss_pred eeeCcCCCCCCC--CC-eeCCCCCcccHHH
Q 041252 69 VFVCPISLEPMQ--DP-VTLCTGQTYERSN 95 (450)
Q Consensus 69 ~~~Cpi~~~~m~--dP-v~~~~g~ty~r~~ 95 (450)
.|.||+|++.|. +. ..-+.||+|+..-
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a~ 31 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCAK 31 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcccc
Confidence 489999999996 22 3334789998764
No 332
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=68.13 E-value=0.65 Score=34.52 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=21.5
Q ss_pred eeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 70 FVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
..||.|++.|. -..|+.+|-.|-..+.. ...||.|+++|.
T Consensus 2 ~~CP~C~~~L~----~~~~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELE----WQGGHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEE----EETTEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CcCCCCCCccE----EeCCEEECcccccccee--cccCCCcccHHH
Confidence 57999998643 23478888887444322 357999998874
No 333
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=67.80 E-value=34 Score=28.99 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=57.8
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHH-cHHHHHHHHhhCChHHHHhhhCCCCChh-hHHHHHHHHHhcC
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAA-HASARKTMVDEGGVALISSLLGPFTSHA-VGSEAVGVLVNLT 220 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~~~-v~~~Al~~L~~Ls 220 (450)
..+..|...|++.++.++..|+..|..+.++ .......+.....+..|..++....+.. ++..++..+..-+
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 4566788888999999999999999999987 4567788888888999999988754444 8888888887644
No 334
>PRK14707 hypothetical protein; Provisional
Probab=67.52 E-value=3.2e+02 Score=34.06 Aligned_cols=273 Identities=15% Similarity=0.123 Sum_probs=144.2
Q ss_pred HHHHHHHhhc-cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHh-cCCCchhhhh
Q 041252 151 ASELLGTLKK-VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVN-LTLDSESKTN 228 (450)
Q Consensus 151 i~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~-Ls~~~~~k~~ 228 (450)
|..++..+++ ++...-..|+..|......+...+..+ +.-++...+..|+...+..+..+|+.+|.. +..+..-+..
T Consensus 207 ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~a 285 (2710)
T PRK14707 207 VATVLNALCKWPDTPDCGNAVSALAERLADESRLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKA 285 (2710)
T ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHh
Confidence 5566777766 334455667777766655554444444 444466777777777666788888888877 6644444333
Q ss_pred ccCCCchHHHHHHhcC-C-CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHH-HHhcc
Q 041252 229 LMQPAKVSLLVDMLNE-G-SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL-RSICL 305 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~-~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL-~~Ls~ 305 (450)
+++..+.-.+.-|+. . ....+..|..+-..|..+.+.++ .+...+ +...+.-|+.=.+..+...++.+| ..|+.
T Consensus 286 -l~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~-~~~~~~-~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~ 362 (2710)
T PRK14707 286 -LDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCK-ALNARG-LSTALNALSKWPDNPVCAAAVSALAERLVA 362 (2710)
T ss_pred -cCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhh-ccchHH-HHHHHHHhhcCCCchhHHHHHHHHHHHhcc
Confidence 344455555555542 3 34455555566677766544332 233333 223333333211222334444444 45666
Q ss_pred ChHHHHHHHhcCCHHHHHHhc-CCCChhHHHHHHHHHH-HhcCChhhHHHHhccCCChHHHHHHHhcCC-hHHHHHHHHH
Q 041252 306 LNEVRSLVVSIGAVPQLVELL-PSLDPDCLQLALCILD-ALSSLPEGKLALKDCANTIPNTVRLLMRVS-EDCTQYALSI 382 (450)
Q Consensus 306 ~~~~~~~iv~~G~v~~Lv~lL-~~~~~~~~~~al~~L~-~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s-~~~~e~A~~~ 382 (450)
+++-+..+--.|+ ...+.-| +.++......|...|. .|...++-+..+- .-++..++.-|.... ..+-..|+..
T Consensus 363 d~~l~~~l~~q~~-a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~--~Q~van~lnalsKWPd~~~C~~aa~~ 439 (2710)
T PRK14707 363 DPELRKDLEPQGV-SSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLD--PQGVSNALNALAKWPDLPICGQAVSA 439 (2710)
T ss_pred CHhhhcccchhHH-HHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcc--hhhHHHHHHHhhcCCcchhHHHHHHH
Confidence 7766665554443 3444444 5555555555555554 5667788888885 467888888887653 4455555556
Q ss_pred HHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252 383 LWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS 431 (450)
Q Consensus 383 L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls 431 (450)
|..--.++. +.++.+--.++...|-.+..=+.++.-++.|..|...+.
T Consensus 440 lA~~la~d~-~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~ 487 (2710)
T PRK14707 440 LAGRLAHDT-ELCKALDPINVTQALDALSKWPDTPICGQTASALAARLA 487 (2710)
T ss_pred HHHHHhccH-HHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence 554333333 222222223333333233333334555455444444444
No 335
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=66.99 E-value=28 Score=33.18 Aligned_cols=90 Identities=20% Similarity=0.194 Sum_probs=60.5
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhc-CCCccchhHHHHHHHHhccChHHHHH
Q 041252 234 KVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN-KRHPNGILPGLSLLRSICLLNEVRSL 312 (450)
Q Consensus 234 ~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~-~~~~~~~~~al~aL~~Ls~~~~~~~~ 312 (450)
+|..+++-|..++.-.|..++.++..|- +.-.++.|.+.|.+ ..++-++..|+.||..++..+
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~-----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~----- 251 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQ-----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADED----- 251 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhcc-----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-----
Confidence 4555555555555666666666666552 12235777776665 347788889999998887543
Q ss_pred HHhcCCHHHHHHhcCCCChhHHHHHHHHHHHh
Q 041252 313 VVSIGAVPQLVELLPSLDPDCLQLALCILDAL 344 (450)
Q Consensus 313 iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L 344 (450)
+++.|.+.+.+..+-+.+.|.-+|..+
T Consensus 252 -----~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 252 -----CVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred -----HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 456788888887888888888887754
No 336
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=66.86 E-value=7.5 Score=34.33 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=18.1
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCc
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQE 113 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~ 113 (450)
.+.||+|+-+..+. ....||.|+.+
T Consensus 134 ~~vC~vCGy~~~ge--------------------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEGE--------------------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccCC--------------------CCCcCCCCCCh
Confidence 79999996555542 36779999865
No 337
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=66.47 E-value=5 Score=28.15 Aligned_cols=28 Identities=32% Similarity=0.645 Sum_probs=17.7
Q ss_pred eeCcCCCCCC-----CCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCc
Q 041252 70 FVCPISLEPM-----QDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQE 113 (450)
Q Consensus 70 ~~Cpi~~~~m-----~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~ 113 (450)
..||+|+.-- .|.+.- +| ..+||.|++.
T Consensus 5 i~CP~CgnKTR~kir~DT~Lk----Nf------------PlyCpKCK~E 37 (55)
T PF14205_consen 5 ILCPICGNKTRLKIREDTVLK----NF------------PLYCPKCKQE 37 (55)
T ss_pred EECCCCCCccceeeecCceec----cc------------cccCCCCCce
Confidence 5799998533 344331 12 4579999875
No 338
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=66.46 E-value=1.5e+02 Score=32.10 Aligned_cols=163 Identities=15% Similarity=0.067 Sum_probs=89.6
Q ss_pred hhccchHHHHHHHHHHHHHHHHcHHHHHHHHhh---CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCC--
Q 041252 158 LKKVKGQARVQALKELHQIAAAHASARKTMVDE---GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQP-- 232 (450)
Q Consensus 158 L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~---G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~-- 232 (450)
+-+-+.+.+.-|+..||.++.++..+-..+-.. ..+..++..+. .+..-+-.++..|.|+-.+..+++.++..
T Consensus 553 l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~ 630 (745)
T KOG0301|consen 553 LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFSNPAGRELFMSRLE 630 (745)
T ss_pred HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 333445667778999998887765544433322 23444444443 23456667889999988887777766543
Q ss_pred CchHHHHHHhcCC-CHHHHHHHHHHHHHHhc--cCCChhhHhhhhhHHHHHHHHHhcC----CCccchhHHHHHHHHhcc
Q 041252 233 AKVSLLVDMLNEG-SVETKINCTRLIEKLME--EKDFRPEIVSSHRLLIGLMRLVKNK----RHPNGILPGLSLLRSICL 305 (450)
Q Consensus 233 g~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~--~~~~~~~~~~~~g~l~~Lv~lL~~~----~~~~~~~~al~aL~~Ls~ 305 (450)
-.+..++. .++. +..++...+.+..|++- ..+. . +.+..+.|...+... .+-++.-..+-||.+|+.
T Consensus 631 ~i~~~~~~-~~s~~~knl~ia~atlaln~sv~l~~~~-~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 631 SILDPVIE-ASSLSNKNLQIALATLALNYSVLLIQDN-E----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHhhhhhh-hhcccchhHHHHHHHHHHHHHHHHHhcc-c----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 12222222 2222 45566655555566641 1111 0 123333333333321 112233455667778888
Q ss_pred ChHHHHHHHhcCCHHHHHHhcCC
Q 041252 306 LNEVRSLVVSIGAVPQLVELLPS 328 (450)
Q Consensus 306 ~~~~~~~iv~~G~v~~Lv~lL~~ 328 (450)
.+.+..++...--|..++.-+++
T Consensus 705 ~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 705 VDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred ccHHHHHHHHhcCHHHHHHHHHH
Confidence 77787778776667777776644
No 339
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=66.11 E-value=2.8 Score=38.97 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=33.7
Q ss_pred CCCe-eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHh
Q 041252 80 QDPV-TLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQ 135 (450)
Q Consensus 80 ~dPv-~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~ 135 (450)
.||. ++.|+|.||-.|...-. ...||.|+.++.-..+.+| |-.-|..++..
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s--lp~~ik~~F~d 66 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS--LPTDIKSYFAD 66 (233)
T ss_pred CCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc--cchhHHHHccC
Confidence 5666 56899999999854331 2389999998655455444 55556555543
No 340
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=65.88 E-value=2.8 Score=29.49 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=20.9
Q ss_pred CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc-CCCCCCCcCC
Q 041252 68 SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL-GRYTCPTTMQ 112 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~-~~~~cP~~~~ 112 (450)
+.|.||.|++-+... .+.+.+.++.... ....||.|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 368999998833222 1233333333332 2456999964
No 341
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=65.34 E-value=1.3e+02 Score=28.75 Aligned_cols=217 Identities=18% Similarity=0.172 Sum_probs=120.8
Q ss_pred hhhCCCCChhhHHHHHHHHHh-cCCCchhhhhccCCCchHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCChhhHhhhh
Q 041252 198 SLLGPFTSHAVGSEAVGVLVN-LTLDSESKTNLMQPAKVSLLVDMLNE--GSVETKINCTRLIEKLMEEKDFRPEIVSSH 274 (450)
Q Consensus 198 ~lL~~~~~~~v~~~Al~~L~~-Ls~~~~~k~~i~~~g~i~~Lv~lL~~--~~~~~~~~aa~~L~~La~~~~~~~~~~~~~ 274 (450)
..|.+. +..++..|+..|.. |..-+... ....-+..|+.+..+ .+......+...+..|.......... ..
T Consensus 6 ~~Ltse-d~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--~~ 79 (262)
T PF14500_consen 6 EYLTSE-DPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--AV 79 (262)
T ss_pred hhhCCC-CHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--HH
Confidence 445554 77888889888886 33222111 333446677776653 35666666677777776443322211 12
Q ss_pred hHHHHHHHHHhcC-CCccchhHHHHHHHHhccChHHHHHHHh--cCCHHHHHHhcCC-CChhHHHHHHHHHHHhcCChhh
Q 041252 275 RLLIGLMRLVKNK-RHPNGILPGLSLLRSICLLNEVRSLVVS--IGAVPQLVELLPS-LDPDCLQLALCILDALSSLPEG 350 (450)
Q Consensus 275 g~l~~Lv~lL~~~-~~~~~~~~al~aL~~Ls~~~~~~~~iv~--~G~v~~Lv~lL~~-~~~~~~~~al~~L~~L~~~~e~ 350 (450)
.++..+.+-..-. .....+..+...|..|-.+. +..+.+ .+.+..+++.+.. .||.....+..++..+...-..
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 2333333321111 12234556666777765432 222232 3566777777754 4899999999998888765221
Q ss_pred HHHHhccCCChHHHHHHHhcC-------C---h-H-HHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHH
Q 041252 351 KLALKDCANTIPNTVRLLMRV-------S---E-D-CTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPV 418 (450)
Q Consensus 351 r~~i~~~~g~i~~Lv~lL~~~-------s---~-~-~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~ 418 (450)
....+.+.+.+... . + . .++.-...|.+.-..++ .. ..-++|.|++=|.++ ++.
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-~f-----a~~~~p~LleKL~s~-~~~ 223 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-LF-----APFAFPLLLEKLDST-SPS 223 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-hh-----HHHHHHHHHHHHcCC-CcH
Confidence 23344555555432 1 1 1 12222233333222222 22 234688899988887 778
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 041252 419 LKQRSAELLKLCSLNYTD 436 (450)
Q Consensus 419 ~k~~A~~lL~~ls~~~~~ 436 (450)
+|.-+...|..|-..|..
T Consensus 224 ~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 224 VKLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHHHHHHHHHHHHHCCH
Confidence 999999999999998764
No 342
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=65.08 E-value=4.7 Score=40.16 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=24.8
Q ss_pred eCCCCCcccH-----HHHHHHHhc------------CCCCCCCcCCcCCCCC
Q 041252 84 TLCTGQTYER-----SNILKWFSL------------GRYTCPTTMQELWDDS 118 (450)
Q Consensus 84 ~~~~g~ty~r-----~~I~~~~~~------------~~~~cP~~~~~l~~~~ 118 (450)
.-+|+.-||| +|+-+||.. |...||.||.+++-.+
T Consensus 303 ~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 303 EPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred CCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 3456677655 899999963 2347999999886544
No 343
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=64.85 E-value=1.2e+02 Score=32.35 Aligned_cols=202 Identities=18% Similarity=0.183 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHcHHHHHHHHh--hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh----hhcc---CCCchHH
Q 041252 167 VQALKELHQIAAAHASARKTMVD--EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK----TNLM---QPAKVSL 237 (450)
Q Consensus 167 ~~Al~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k----~~i~---~~g~i~~ 237 (450)
.+..+.|..|+.... ..+.+ ...+-.|+++|+.. +.+..+....-+.. .. ...+ ..+. ...++..
T Consensus 288 ~~~~~~l~~L~~~~~---~~~~~~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~ 361 (574)
T smart00638 288 VQIVEVLKHLVQDIA---SDVQEPAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKF 361 (574)
T ss_pred hhHHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHH
Confidence 344555566654322 22221 22345677777654 34443333333332 11 1222 2222 3456778
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHh-ccCCChhhHhhhhhHHHHHHHHHhcCC---CccchhHHHHHHHHh----ccChHH
Q 041252 238 LVDMLNEGSVETKINCTRLIEKLM-EEKDFRPEIVSSHRLLIGLMRLVKNKR---HPNGILPGLSLLRSI----CLLNEV 309 (450)
Q Consensus 238 Lv~lL~~~~~~~~~~aa~~L~~La-~~~~~~~~~~~~~g~l~~Lv~lL~~~~---~~~~~~~al~aL~~L----s~~~~~ 309 (450)
+.+.+.++.....+ |+.++..+. ..... ....+..+..+++++. ++.+...+.-++.+| |.+.+.
T Consensus 362 i~~~i~~~~~~~~e-a~~~~~~~~~~~~~P------t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~ 434 (574)
T smart00638 362 IKQWIKNKKITPLE-AAQLLAVLPHTARYP------TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPS 434 (574)
T ss_pred HHHHHHcCCCCHHH-HHHHHHHHHHhhhcC------CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 88888776433322 233333332 11111 1234577777776532 222333444444444 333322
Q ss_pred HHHHHhcCCHHHHHHhcC----CCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh---cCChHHHHHHHHH
Q 041252 310 RSLVVSIGAVPQLVELLP----SLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM---RVSEDCTQYALSI 382 (450)
Q Consensus 310 ~~~iv~~G~v~~Lv~lL~----~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~---~~s~~~~e~A~~~ 382 (450)
+...+-...++.|.+.|. ..+.+-+..++.+|.|+.. + ..++.+...+. ..+...+-.|+.+
T Consensus 435 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-~----------~~i~~l~~~l~~~~~~~~~iR~~Av~A 503 (574)
T smart00638 435 CPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-P----------SSIKVLEPYLEGAEPLSTFIRLAAILA 503 (574)
T ss_pred CChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-h----------hHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 211122235566666553 2355556667777777754 2 33444444444 1246788888888
Q ss_pred HHHhcccCch
Q 041252 383 LWSICKIAPE 392 (450)
Q Consensus 383 L~~L~~~~~~ 392 (450)
|..++...+.
T Consensus 504 lr~~a~~~p~ 513 (574)
T smart00638 504 LRNLAKRDPR 513 (574)
T ss_pred HHHHHHhCch
Confidence 8887765553
No 344
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=64.70 E-value=25 Score=30.30 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=55.7
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--ChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252 233 AKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD--FRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC 304 (450)
Q Consensus 233 g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~--~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls 304 (450)
.++..|.+-|.+.++.++..|..+|..++.+-. ...+ +.+..++..|++++....++.++...+..+...+
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~e-vask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQE-VASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHH-HhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 457777788888999999999999999975432 2333 4677899999999988667888888888887776
No 345
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=64.06 E-value=88 Score=27.41 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHH
Q 041252 274 HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLA 353 (450)
Q Consensus 274 ~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~ 353 (450)
..+++.|+++|+.+.+..++..++++|..|..-+..+.+....+.=.. .-.+.+.......+ .+....+ .-+.
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~---~~~~~~~~~~~~~l---~~~~~~~-~~ee 81 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSK---SSENSNDESTDISL---PMMGISP-SSEE 81 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCcc---ccccccccchhhHH---hhccCCC-chHH
Confidence 346788888998876788899999999999765555555333211100 00111122222222 1111111 2222
Q ss_pred HhccCCChHHHHHHHhcCCh-HHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHH
Q 041252 354 LKDCANTIPNTVRLLMRVSE-DCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRS 423 (450)
Q Consensus 354 i~~~~g~i~~Lv~lL~~~s~-~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A 423 (450)
..- .-++..|++.|...+- .-...++.++..+.+.-...+... . .-++|.++..+++. .+..++.-
T Consensus 82 ~y~-~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~-L-~~viP~~l~~i~~~-~~~~~e~~ 148 (160)
T PF11865_consen 82 YYP-TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPY-L-PQVIPIFLRVIRTC-PDSLREFY 148 (160)
T ss_pred HHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhH-H-HHHhHHHHHHHHhC-CHHHHHHH
Confidence 222 3457789998887653 334456677776664432233221 2 34788999999864 55666553
No 346
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=63.69 E-value=71 Score=26.71 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=50.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHh-cChHHHHHHHHH-----cCC--CHHHHHHHHHHHHHHHh
Q 041252 362 PNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVD-AGLAAKLFLVIQ-----SGC--NPVLKQRSAELLKLCSL 432 (450)
Q Consensus 362 ~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~-~G~i~~L~~ll~-----s~~--~~~~k~~A~~lL~~ls~ 432 (450)
.-|.+-|.+.++-++-.|+.+|-.+|...++..+..+.+ .-.|..+...-. .|. ...+|..|.+++.++-.
T Consensus 41 d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 41 EYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 367777888888999999999999999888776666654 344555544443 121 24688999999988643
No 347
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=63.46 E-value=2.9 Score=33.71 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=27.3
Q ss_pred cCCCCeeeCcCCCCCCCCCe--eCCCCCcccHHHHH
Q 041252 64 AEIPSVFVCPISLEPMQDPV--TLCTGQTYERSNIL 97 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv--~~~~g~ty~r~~I~ 97 (450)
..+.+.-.|++|++.+.+++ +.||||.|-..|+.
T Consensus 73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 46677778999999998776 35899999888764
No 348
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=62.94 E-value=4.8 Score=39.90 Aligned_cols=53 Identities=13% Similarity=0.180 Sum_probs=36.1
Q ss_pred CCCCeeeCcCCCCCCCCCe----eCCCCCcccHHHHHHH-HhcCCCCCCCcCCcCCCC
Q 041252 65 EIPSVFVCPISLEPMQDPV----TLCTGQTYERSNILKW-FSLGRYTCPTTMQELWDD 117 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv----~~~~g~ty~r~~I~~~-~~~~~~~cP~~~~~l~~~ 117 (450)
.-..+|.||++..+|.+-- +..+|..||-.+|++. ++..+...-.+..+++..
T Consensus 97 ns~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~ 154 (518)
T KOG0883|consen 97 NSEGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRA 154 (518)
T ss_pred CCCCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchh
Confidence 4456899999999998632 3469999999999996 333344444444444443
No 349
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=62.57 E-value=58 Score=35.35 Aligned_cols=111 Identities=15% Similarity=0.047 Sum_probs=66.7
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhcc-----CCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchh
Q 041252 319 VPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDC-----ANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEE 393 (450)
Q Consensus 319 v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~-----~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~ 393 (450)
...++++|.+.+--++-..+.+.+|+..+-....++.+| ...+..|++-+...++-++..|+.++..++..+..-
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 357888998887766666667777766432111122221 123445555556678999999999999998776432
Q ss_pred HHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHH-HHHhh
Q 041252 394 CSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLK-LCSLN 433 (450)
Q Consensus 394 ~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~-~ls~~ 433 (450)
..+ ++.++.....-+|.. +..+|++|..++. ++-.+
T Consensus 381 ~~~---r~ev~~lv~r~lqDr-ss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 381 VGR---RHEVIRLVGRRLQDR-SSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred cch---HHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhcC
Confidence 111 122344444566666 6778888876553 34444
No 350
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=62.45 E-value=41 Score=30.24 Aligned_cols=109 Identities=25% Similarity=0.261 Sum_probs=66.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccC----------CChhhHh----hh-----hhHHHHHHHHHhcCCCccchhHH
Q 041252 236 SLLVDMLNEGSVETKINCTRLIEKLMEEK----------DFRPEIV----SS-----HRLLIGLMRLVKNKRHPNGILPG 296 (450)
Q Consensus 236 ~~Lv~lL~~~~~~~~~~aa~~L~~La~~~----------~~~~~~~----~~-----~g~l~~Lv~lL~~~~~~~~~~~a 296 (450)
+.+.-++...++.+|..|+.+|..|-++. .....-+ .. ...-..|+..|..+.+..+....
T Consensus 43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~ 122 (182)
T PF13251_consen 43 SLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQL 122 (182)
T ss_pred chhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 33444455667777777777777663221 1111001 11 13456677777777677788899
Q ss_pred HHHHHHhccCh-HHHHHHHhcCCHH----HHHHhcCCCChhHHHHHHHHHHHhcCC
Q 041252 297 LSLLRSICLLN-EVRSLVVSIGAVP----QLVELLPSLDPDCLQLALCILDALSSL 347 (450)
Q Consensus 297 l~aL~~Ls~~~-~~~~~iv~~G~v~----~Lv~lL~~~~~~~~~~al~~L~~L~~~ 347 (450)
+++|..|..+. -.|- +.|.++ .+-.++.+.|..++..++.++..+.+.
T Consensus 123 lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 123 LKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 99999887543 3332 234444 444445667889999999999988764
No 351
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=62.36 E-value=52 Score=26.38 Aligned_cols=94 Identities=12% Similarity=0.131 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHcHHHHHHHH-hhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHh
Q 041252 164 QARVQALKELHQIAAAHASARKTMV-DEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDML 242 (450)
Q Consensus 164 ~~~~~Al~~L~~l~~~~~~~r~~i~-~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL 242 (450)
+.|..|++-|..--...--.-..++ +.+.+..|++-... .+....+.++..|..+..++.....+.+-|++..|-++=
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf-~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNF-PPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCC-CCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHH
Confidence 4566676665432221111111122 22334444444333 245678889999999999998888888899988866655
Q ss_pred cCCCHHHHHHHHHHHH
Q 041252 243 NEGSVETKINCTRLIE 258 (450)
Q Consensus 243 ~~~~~~~~~~aa~~L~ 258 (450)
..-++..+...-.++.
T Consensus 81 ~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 81 PNVEPNLQAEIDEILD 96 (98)
T ss_pred hcCCHHHHHHHHHHHh
Confidence 4445555555444443
No 352
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.33 E-value=2.6e+02 Score=33.38 Aligned_cols=222 Identities=16% Similarity=0.139 Sum_probs=118.7
Q ss_pred hHHHHHHHHHh-cCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhc
Q 041252 208 VGSEAVGVLVN-LTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN 286 (450)
Q Consensus 208 v~~~Al~~L~~-Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~ 286 (450)
-...|..-+|+ |..+..+...---...+.-|+.-|.+..-.+|+.++.+|..|-...+.-...=.-..+...+++...+
T Consensus 1013 ~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDD 1092 (1702)
T KOG0915|consen 1013 KVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDD 1092 (1702)
T ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777 44443221111113456666666777788999999999999976654322110112344555555443
Q ss_pred CCCccchhHH---HHHHHHhc-----cChHHHHHHHhcCCHHHHHHh--cCCCChhHHHHHHHHHHHhcCChhhHHHHhc
Q 041252 287 KRHPNGILPG---LSLLRSIC-----LLNEVRSLVVSIGAVPQLVEL--LPSLDPDCLQLALCILDALSSLPEGKLALKD 356 (450)
Q Consensus 287 ~~~~~~~~~a---l~aL~~Ls-----~~~~~~~~iv~~G~v~~Lv~l--L~~~~~~~~~~al~~L~~L~~~~e~r~~i~~ 356 (450)
-...++++| +.+|..|| ..+..+..-+-+-++|.|++- | +.-++++.-++.++..|+.+... ++.-
T Consensus 1093 -IKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~--~lkP 1168 (1702)
T KOG0915|consen 1093 -IKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGK--ELKP 1168 (1702)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchh--hhcc
Confidence 123355444 44555554 111222222223456665542 3 34578999999999999976433 2221
Q ss_pred c-CCChHHHHHHHhcCChHH-----------HHHHHHHHH-HhcccCch-hHHH-------HHHhcChHHHHHHHHHcCC
Q 041252 357 C-ANTIPNTVRLLMRVSEDC-----------TQYALSILW-SICKIAPE-ECSS-------AAVDAGLAAKLFLVIQSGC 415 (450)
Q Consensus 357 ~-~g~i~~Lv~lL~~~s~~~-----------~e~A~~~L~-~L~~~~~~-~~~~-------~~~~~G~i~~L~~ll~s~~ 415 (450)
+ +..||.|+.....-++.+ ...|+..+. +.++.+|- +... .-+=...+|.+.++++++-
T Consensus 1169 ~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sV 1248 (1702)
T KOG0915|consen 1169 HFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSV 1248 (1702)
T ss_pred hhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC
Confidence 1 345666666665543322 222333332 22333321 0001 1122457888899998764
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 041252 416 NPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 416 ~~~~k~~A~~lL~~ls~~ 433 (450)
.-.+|-.++..+-++...
T Consensus 1249 gl~Tkvg~A~fI~~L~~r 1266 (1702)
T KOG0915|consen 1249 GLGTKVGCASFISLLVQR 1266 (1702)
T ss_pred CCCcchhHHHHHHHHHHH
Confidence 455677777766666655
No 353
>PHA02862 5L protein; Provisional
Probab=62.29 E-value=7.5 Score=33.19 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=36.7
Q ss_pred eCcCCCCCCCCCeeCCCCC-----cccHHHHHHHHhc-CCCCCCCcCCcCCCCCCcchHHHHHHHHHHHH
Q 041252 71 VCPISLEPMQDPVTLCTGQ-----TYERSNILKWFSL-GRYTCPTTMQELWDDSVTPNKTLYHLIHTWFS 134 (450)
Q Consensus 71 ~Cpi~~~~m~dPv~~~~g~-----ty~r~~I~~~~~~-~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~ 134 (450)
+|=||++-=.+. .-||.. -.-++|+++|+.. +..+||.|+.++.-+.. .+-..+|.-
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~------yKpf~kW~~ 66 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKT------YVSFKKWNW 66 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEc------cccHHHhhc
Confidence 577888765444 344432 2458999999984 45679999988743221 224677863
No 354
>PRK09169 hypothetical protein; Validated
Probab=62.21 E-value=3.5e+02 Score=33.91 Aligned_cols=91 Identities=20% Similarity=0.186 Sum_probs=47.8
Q ss_pred HHHHHHHhhc-cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHh-cCCCchhhhh
Q 041252 151 ASELLGTLKK-VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVN-LTLDSESKTN 228 (450)
Q Consensus 151 i~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~-Ls~~~~~k~~ 228 (450)
+..++..+++ +....-..+...|......++..+..+-.. .+..++.-|+...+....+.++..|.. |..++.-. .
T Consensus 165 v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~q-~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~-~ 242 (2316)
T PRK09169 165 FALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDAQ-EVANALNALSKWPDSPRCRNAAERLAERLADEPGLL-Q 242 (2316)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcchH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHH-H
Confidence 4556666665 334444555566655544555555443322 355666666665555666677777776 44333222 2
Q ss_pred ccCCCchHHHHHHhc
Q 041252 229 LMQPAKVSLLVDMLN 243 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~ 243 (450)
-++...+..++.-|+
T Consensus 243 ~l~~q~va~~LNAlS 257 (2316)
T PRK09169 243 SLRAQEVALLLNALS 257 (2316)
T ss_pred hcCHHHHHHHHHHHh
Confidence 233444555555554
No 355
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=61.93 E-value=49 Score=26.14 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=51.4
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252 235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL 305 (450)
Q Consensus 235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~ 305 (450)
....+..|.++.+.+|.++...|+.|....+ .......+++..+...|+++ ++-+--+|...|..|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHH
Confidence 4455666778889999999999999986665 22334456777888888876 57777888899988884
No 356
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=61.93 E-value=1.5e+02 Score=28.31 Aligned_cols=139 Identities=17% Similarity=0.261 Sum_probs=71.7
Q ss_pred HHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCC-CCChhhHHHHHHHHHhcCCCchhhhhccCCCc
Q 041252 156 GTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGP-FTSHAVGSEAVGVLVNLTLDSESKTNLMQPAK 234 (450)
Q Consensus 156 ~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~-~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~ 234 (450)
..|.+.+...|.+|+..|..+...-+... ....-+..|+.+..+ -.|......++..+..|..... ...+.
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-----~~~~~ 77 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-----FSPES 77 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-----CChhh
Confidence 44667777889999998888776543221 122225666665532 2244555555666655542211 11122
Q ss_pred hHHHHHHhc-C-----CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHh
Q 041252 235 VSLLVDMLN-E-----GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSI 303 (450)
Q Consensus 235 i~~Lv~lL~-~-----~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~L 303 (450)
...+++.+. + -....|..+-.+|..|.+...... .-...+.+..++++...+.+|.-...+...+..+
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVI 151 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 333333322 1 134566777777777754432111 1122356777777777666665544444444444
No 357
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=61.81 E-value=2.9e+02 Score=31.68 Aligned_cols=195 Identities=12% Similarity=0.132 Sum_probs=109.8
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHH
Q 041252 233 AKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSL 312 (450)
Q Consensus 233 g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~ 312 (450)
+.+..|...|++.+..++-.||.-+..++...+ .+ -....+...++++....++.+-..+.-+|..|+...=....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~--Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PE--LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HH--HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 456666666677788888899999888875544 11 23445666666555433355556677777777633211111
Q ss_pred HHhcCCHHHHHHhcC--------CCChhHHHHHHHHHHHhcCC--hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHH
Q 041252 313 VVSIGAVPQLVELLP--------SLDPDCLQLALCILDALSSL--PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSI 382 (450)
Q Consensus 313 iv~~G~v~~Lv~lL~--------~~~~~~~~~al~~L~~L~~~--~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~ 382 (450)
..+ .++|.++.-|. +....++..|+.+.+.++.. +..-+-+.. .-.-..|...++..+-.+++.|.++
T Consensus 417 ~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 417 LLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHHH
Confidence 111 23444444441 22457899999999999865 322222333 1222344555566667788888887
Q ss_pred HHHhccc-Cch-------------------h----HHHHHH-hcChHHHHHH-HHHc---CCCHHHHHHHHHHHHHHHhh
Q 041252 383 LWSICKI-APE-------------------E----CSSAAV-DAGLAAKLFL-VIQS---GCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 383 L~~L~~~-~~~-------------------~----~~~~~~-~~G~i~~L~~-ll~s---~~~~~~k~~A~~lL~~ls~~ 433 (450)
|-..-.. ..- + ....+. -.|...++++ ++.+ ..+..+|+.|+..|..++..
T Consensus 495 lqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 495 LQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT 574 (1133)
T ss_pred HHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 7653322 100 1 111111 2344444443 2222 23688999999988887765
No 358
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=60.74 E-value=48 Score=27.96 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=57.4
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcH-HHHHHHHhhCChHHHHhhhCC--CCChhhHHHHHHHHHhcCC
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHA-SARKTMVDEGGVALISSLLGP--FTSHAVGSEAVGVLVNLTL 221 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~r~~i~~~G~i~~Lv~lL~~--~~~~~v~~~Al~~L~~Ls~ 221 (450)
..+..|...|+++++.++..|+..|..+.++.. .....+.....+..|+.++.. ..+..++..++..+.+.+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999999998754 367777776667778888875 3467899999988887543
No 359
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=60.44 E-value=12 Score=32.58 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=33.5
Q ss_pred CeeeCcCCCCCCCCCeeCCCCC-----cccHHHHHHHHhc-CCCCCCCcCCcCCC
Q 041252 68 SVFVCPISLEPMQDPVTLCTGQ-----TYERSNILKWFSL-GRYTCPTTMQELWD 116 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~~g~-----ty~r~~I~~~~~~-~~~~cP~~~~~l~~ 116 (450)
....|=||.+--. +..-||.. ..=++|+++|+.. +...||.|+.++.-
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 3467999987653 33445443 2368999999985 45679999988643
No 360
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=60.38 E-value=86 Score=34.07 Aligned_cols=139 Identities=18% Similarity=0.200 Sum_probs=89.3
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHH
Q 041252 233 AKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSL 312 (450)
Q Consensus 233 g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~ 312 (450)
..++.|..-++..+..+++.+...+-.+++.=|. .+....++|.|-.+........++.+++.++..+. ..-.+..
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~-q~lD~~~ 464 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI-QRLDKAA 464 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH-HHHHHHH
Confidence 3466666666777888899988888888654442 23455667777776444445666778888888877 1112222
Q ss_pred HHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHH
Q 041252 313 VVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYA 379 (450)
Q Consensus 313 iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A 379 (450)
+++ -+.++.......++.+....+.+..++... ..+...+. ...+|.++-+....+-...+++
T Consensus 465 v~d--~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~--~~VlPlli~ls~~~~L~~~Qy~ 528 (700)
T KOG2137|consen 465 VLD--ELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMA--ENVLPLLIPLSVAPSLNGEQYN 528 (700)
T ss_pred hHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeeh--hhhhhhhhhhhhcccccHHHHH
Confidence 222 344555555667889999999988888765 33423333 4788888888777664444443
No 361
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=60.04 E-value=7.6 Score=24.26 Aligned_cols=11 Identities=18% Similarity=0.549 Sum_probs=8.2
Q ss_pred CCCCCCCcCCc
Q 041252 103 GRYTCPTTMQE 113 (450)
Q Consensus 103 ~~~~cP~~~~~ 113 (450)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 36789999764
No 362
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.09 E-value=10 Score=28.19 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=28.1
Q ss_pred CCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHH
Q 041252 88 GQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLY 126 (450)
Q Consensus 88 g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~ 126 (450)
-+|||..|-+.-+ +..||.|+-.|-...+.|...|.
T Consensus 28 EcTFCadCae~~l---~g~CPnCGGelv~RP~RPaa~L~ 63 (84)
T COG3813 28 ECTFCADCAENRL---HGLCPNCGGELVARPIRPAAKLA 63 (84)
T ss_pred eeehhHhHHHHhh---cCcCCCCCchhhcCcCChHHHHh
Confidence 5899999988654 46799999988877888865443
No 363
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=58.85 E-value=12 Score=30.50 Aligned_cols=42 Identities=26% Similarity=0.364 Sum_probs=35.3
Q ss_pred hhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHH
Q 041252 293 ILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCL 334 (450)
Q Consensus 293 ~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~ 334 (450)
....+..|..|+..++--..+++.|+++.|+.+|...+.++.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 345667888899999999999999999999999987776554
No 364
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.50 E-value=11 Score=38.20 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=25.2
Q ss_pred eeeCcCCC-CCCCC---CeeCCCCCcccHHHHHHHHh
Q 041252 69 VFVCPISL-EPMQD---PVTLCTGQTYERSNILKWFS 101 (450)
Q Consensus 69 ~~~Cpi~~-~~m~d---Pv~~~~g~ty~r~~I~~~~~ 101 (450)
..+|+||. +.+.. -.+..|||.||..|..++++
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 46899999 43332 12566999999999999987
No 365
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=58.22 E-value=2.3e+02 Score=29.36 Aligned_cols=142 Identities=14% Similarity=0.178 Sum_probs=89.6
Q ss_pred hHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhh-hhHHHHHHHHHhcCCCccchhHHHH-HHHHhccChHHHH
Q 041252 235 VSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSS-HRLLIGLMRLVKNKRHPNGILPGLS-LLRSICLLNEVRS 311 (450)
Q Consensus 235 i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~-~g~l~~Lv~lL~~~~~~~~~~~al~-aL~~Ls~~~~~~~ 311 (450)
+..+++.|+. .+...+..|.++|..+......+ .+-+ .-++..+++.-++. ++++...|.. ++.-++++...+.
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~--l~DstE~ai~K~Leaa~ds-~~~v~~~Aeed~~~~las~~P~~~ 407 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR--LFDSTEIAICKVLEAAKDS-QDEVMRVAEEDCLTTLASHLPLQC 407 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh--hhchHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHhhCchhH
Confidence 5677788876 67788899999998887554322 2211 22344455544443 4555555554 4666666554332
Q ss_pred HHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC--hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252 312 LVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL--PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK 388 (450)
Q Consensus 312 ~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 388 (450)
. ..+..++-..+.+..-.+++.+..|+.. .|--..++. ...|.+++.-.+.|..++..|+-+|..+..
T Consensus 408 I-------~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~--diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 408 I-------VNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP--DIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred H-------HHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh--hhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 1 1233333335666667777777777754 344444554 589999999998999999999999877643
No 366
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.16 E-value=2.5 Score=40.26 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=30.3
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcc-cHHHHHHHHhcCC--CCCCCcCCc
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTY-ERSNILKWFSLGR--YTCPTTMQE 113 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty-~r~~I~~~~~~~~--~~cP~~~~~ 113 (450)
..+|-||.+.-+|=|.++|||.. |-.| |. ..||.||+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqy 340 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQY 340 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHH
Confidence 78899999999999999999964 3344 32 369999864
No 367
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=57.82 E-value=2.7e+02 Score=29.95 Aligned_cols=205 Identities=14% Similarity=0.117 Sum_probs=97.8
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHH----HHHHHHhhCC---hHHHHhhhCCCCChhhHHHHHHHHHhcCCC
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHAS----ARKTMVDEGG---VALISSLLGPFTSHAVGSEAVGVLVNLTLD 222 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~----~r~~i~~~G~---i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~ 222 (450)
.+..|+..|+..+.+.-....+.+..-. .... ..+++..+|- +..+..++... ......|..+|..|...
T Consensus 348 ~f~~Lv~~lr~l~~~~L~~l~~~~~~~~-~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~--~~~~~ea~~~l~~l~~~ 424 (618)
T PF01347_consen 348 KFSRLVRLLRTLSYEDLEELYKQLKSKS-KKEQARKIFLDALPQAGTNPAVKFIKDLIKSK--KLTDDEAAQLLASLPFH 424 (618)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHTTS----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT---S-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhh
Confidence 4666777776655443333333332220 0122 3344445553 45566666553 12234455555554332
Q ss_pred c--hhhhhccCCCchHHHHHHhcC----CCHHHHHHHHHHHHHHh----ccC-------CChhhHhhhhhHHHHHHHHHh
Q 041252 223 S--ESKTNLMQPAKVSLLVDMLNE----GSVETKINCTRLIEKLM----EEK-------DFRPEIVSSHRLLIGLMRLVK 285 (450)
Q Consensus 223 ~--~~k~~i~~~g~i~~Lv~lL~~----~~~~~~~~aa~~L~~La----~~~-------~~~~~~~~~~g~l~~Lv~lL~ 285 (450)
. .+ ...+..+..++.+ .+..++..|.-.+..|. ..+ ..... ....+++.|...+.
T Consensus 425 ~~~Pt------~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~ 496 (618)
T PF01347_consen 425 VRRPT------EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRC--IIEKYVPYLEQELK 496 (618)
T ss_dssp -----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS----GGGTHHHHHHHH
T ss_pred cCCCC------HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchh--hHHHHHHHHHHHHH
Confidence 1 11 2235555555553 35567777776766663 221 00111 11234455555554
Q ss_pred ---cCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCC---ChhHHHHHHHHHHHhcCChhhHHHHhccCC
Q 041252 286 ---NKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSL---DPDCLQLALCILDALSSLPEGKLALKDCAN 359 (450)
Q Consensus 286 ---~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~---~~~~~~~al~~L~~L~~~~e~r~~i~~~~g 359 (450)
+..+..-+..++.||.|+... ..++.|...+.+. +..++..|+.+|+.++... ...+
T Consensus 497 ~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~--~~~v----- 559 (618)
T PF01347_consen 497 EAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC--PEKV----- 559 (618)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT---HHHH-----
T ss_pred HHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC--cHHH-----
Confidence 222345566788888888532 3567788888655 5778888898888775431 1112
Q ss_pred ChHHHHHHHhcCC--hHHHHHHHHHH
Q 041252 360 TIPNTVRLLMRVS--EDCTQYALSIL 383 (450)
Q Consensus 360 ~i~~Lv~lL~~~s--~~~~e~A~~~L 383 (450)
.+.|..+..+.. .+++-.|..+|
T Consensus 560 -~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 560 -REILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp -HHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred -HHHHHHHhcCCCCChhHHHHHHHHH
Confidence 224556665543 35555454443
No 368
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.65 E-value=2.8e+02 Score=30.46 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=86.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHh--ccCCChhhHhhh--hhHHHHHHHHHhcCCCccchhHHHH-HHHHhc-cChHHHH
Q 041252 238 LVDMLNEGSVETKINCTRLIEKLM--EEKDFRPEIVSS--HRLLIGLMRLVKNKRHPNGILPGLS-LLRSIC-LLNEVRS 311 (450)
Q Consensus 238 Lv~lL~~~~~~~~~~aa~~L~~La--~~~~~~~~~~~~--~g~l~~Lv~lL~~~~~~~~~~~al~-aL~~Ls-~~~~~~~ 311 (450)
|-+-|+-.|.++|.+|+.++.++- .+.+..++.+-. ..=...|.++|+++ -+.++..|.. .+...+ .+.-.-.
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDP-YPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHcCH
Confidence 334456678999999999999883 444443333211 12357788888887 4777654443 333333 1211111
Q ss_pred HHHhcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 041252 312 LVVSIGAVPQLVELL-PSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI 386 (450)
Q Consensus 312 ~iv~~G~v~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L 386 (450)
.++- ..+..+.+-+ .+...+++-....-|-.+..+|.....+.. ++|.|=..|...+++++-.++..|..+
T Consensus 258 ~i~~-~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~---~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 258 TILI-DLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQ---LLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHH-HHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHH---HHHhcchhhhccchhHHHHHHHHHHHH
Confidence 1110 0111222222 333457777777788888887776666643 677777788888888888888887766
No 369
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=56.75 E-value=74 Score=27.27 Aligned_cols=77 Identities=9% Similarity=0.111 Sum_probs=57.7
Q ss_pred ChHHHHHHHhc-CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHH-HHHHHHcC--CCHHHHHHHHHHHHHHHhhcC
Q 041252 360 TIPNTVRLLMR-VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAK-LFLVIQSG--CNPVLKQRSAELLKLCSLNYT 435 (450)
Q Consensus 360 ~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~-L~~ll~s~--~~~~~k~~A~~lL~~ls~~~~ 435 (450)
++..|-+-|.. .++.++..|+.+|-.+.+++......++...+.+.- |+.++... ....+|++...+++..+...+
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 45566666654 468889999999999999887666677777788876 88888532 245889999999998887754
Q ss_pred C
Q 041252 436 D 436 (450)
Q Consensus 436 ~ 436 (450)
+
T Consensus 119 ~ 119 (141)
T cd03565 119 G 119 (141)
T ss_pred C
Confidence 4
No 370
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=56.71 E-value=11 Score=33.67 Aligned_cols=36 Identities=22% Similarity=0.679 Sum_probs=28.0
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCc
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQE 113 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~ 113 (450)
-++||.++.+|-|-+ |-=-+.+|..|++. ||....+
T Consensus 87 IYICPFTGKVF~DNt-----~~nPQDAIYDWvSk----CPeN~ER 122 (238)
T PF10915_consen 87 IYICPFTGKVFGDNT-----HPNPQDAIYDWVSK----CPENTER 122 (238)
T ss_pred EEEcCCcCccccCCC-----CCChHHHHHHHHhh----CCccchh
Confidence 589999999999865 33358999999875 8876544
No 371
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=56.26 E-value=58 Score=26.52 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=50.3
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHH-----HHcCCCHHHHHHHHHHHHHH
Q 041252 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLV-----IQSGCNPVLKQRSAELLKLC 430 (450)
Q Consensus 360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~l-----l~s~~~~~~k~~A~~lL~~l 430 (450)
++..|.+-|.+.++.++-.|+.+|-.+.+++.+.....+........++.+ .....+..+|+++..++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 445666777777899999999999999999987766666665555444432 11223578899998888764
No 372
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=55.35 E-value=44 Score=28.45 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=56.4
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHc-HHHHHHHHhhCChHHHHhhhCCCCChh---hHHHHHHHHHhcC
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAH-ASARKTMVDEGGVALISSLLGPFTSHA---VGSEAVGVLVNLT 220 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~~~~---v~~~Al~~L~~Ls 220 (450)
..+..|...|++.++.++..|+..|..+.++. +..+..+.....+..|..++.+..... +++.++..|...+
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 45667888889999999999999999999875 567788888888888888886543333 7888888877643
No 373
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.16 E-value=74 Score=31.11 Aligned_cols=135 Identities=15% Similarity=0.214 Sum_probs=80.3
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
..+...+..|.+.+.+....++..|+.++..|++........ .|..+++-+++. ...+...|+.++..+...-.++
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~-- 163 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNS-- 163 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHH--
Confidence 346677888899999999999999999998777554444333 355666767664 4567777887777654322221
Q ss_pred ccCCCchHHHHHHhc-CC---CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHH
Q 041252 229 LMQPAKVSLLVDMLN-EG---SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGL 297 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~-~~---~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al 297 (450)
+.+ .+..++..|. .. +-=+++.|..+|..+...-. -.-+++.|...+... ++.++..+.
T Consensus 164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt-------p~~~L~~L~~~~~~~-n~r~r~~a~ 226 (334)
T KOG2933|consen 164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT-------PQKLLRKLIPILQHS-NPRVRAKAA 226 (334)
T ss_pred HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC-------hHHHHHHHHHHHhhh-chhhhhhhh
Confidence 111 2333444333 22 34467888888887753221 123445555555553 344444443
No 374
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.96 E-value=6.3 Score=37.41 Aligned_cols=42 Identities=14% Similarity=0.284 Sum_probs=31.4
Q ss_pred eeeCcCCCCCCCCCeeCCC----CCcccHHHHHHHHhc----CCCCCCCc
Q 041252 69 VFVCPISLEPMQDPVTLCT----GQTYERSNILKWFSL----GRYTCPTT 110 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~----g~ty~r~~I~~~~~~----~~~~cP~~ 110 (450)
-++|.+|+|-+.|..-+.| +|.||--|=.+.++. |.-+||.-
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSG 317 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSG 317 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCC
Confidence 3899999999999876655 799997776666653 34567753
No 375
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=54.82 E-value=58 Score=32.74 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=63.6
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCc
Q 041252 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTT 438 (450)
Q Consensus 360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~~ 438 (450)
+|..+.+-|.+..+.+.-.|+..|-++..++....+.++.......-|..++.+...+.++++-..+++..+..+++.+
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp 124 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDP 124 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCc
Confidence 5666777777778899999999999998888766677777788888888888866689999998888888877655443
No 376
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.81 E-value=2.2e+02 Score=34.03 Aligned_cols=259 Identities=15% Similarity=0.073 Sum_probs=124.2
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhh-CChHHHHhhhCCCCChhhHHH---HHHHHHhcCCCchhhhhc
Q 041252 154 LLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDE-GGVALISSLLGPFTSHAVGSE---AVGVLVNLTLDSESKTNL 229 (450)
Q Consensus 154 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~-G~i~~Lv~lL~~~~~~~v~~~---Al~~L~~Ls~~~~~k~~i 229 (450)
+...+.+.+++.|..++-.|..+...-...+...... ....+..++|... |+-.|+- .+++++.|...+ .|+.+
T Consensus 823 l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~-dEf~QDvAsrGlglVYelgd~~-~k~~L 900 (1702)
T KOG0915|consen 823 LDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDN-DEFSQDVASRGLGLVYELGDSS-LKKSL 900 (1702)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhccc-HHHHHHHHhcCceEEEecCCch-hHHHH
Confidence 3334466778888777666666654332222322222 2235667777653 4433433 344444444322 22211
Q ss_pred cCCCchHHHHHHhcCCC---------------------H-HHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcC
Q 041252 230 MQPAKVSLLVDMLNEGS---------------------V-ETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNK 287 (450)
Q Consensus 230 ~~~g~i~~Lv~lL~~~~---------------------~-~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~ 287 (450)
+..|+.-|-.|. + .-+..--.=|.+|+++ +++...+-..+++-++.
T Consensus 901 -----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd-------l~qPdLVYKFM~LAnh~ 968 (1702)
T KOG0915|consen 901 -----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD-------LGQPDLVYKFMQLANHN 968 (1702)
T ss_pred -----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh-------cCChHHHHHHHHHhhhh
Confidence 233333222110 0 0111222334555432 22334455566666654
Q ss_pred CCccchhHHHHHHHHhccChHHHHHHHh--cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh-hHHHHhccCCChHHH
Q 041252 288 RHPNGILPGLSLLRSICLLNEVRSLVVS--IGAVPQLVELLPSLDPDCLQLALCILDALSSLPE-GKLALKDCANTIPNT 364 (450)
Q Consensus 288 ~~~~~~~~al~aL~~Ls~~~~~~~~iv~--~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e-~r~~i~~~~g~i~~L 364 (450)
...+.++-|+-=+..|+... +.++.- --.||.|.+.=.+++..++.....+=..|...+. .-..... ..+.-|
T Consensus 969 A~wnSk~GaAfGf~~i~~~a--~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n--eIl~eL 1044 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQA--GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN--EILDEL 1044 (1702)
T ss_pred chhhcccchhhchHHHHHHH--HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH--HHHHHH
Confidence 44444554444444444221 111111 1245666666677788888776666666655422 2222222 244455
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252 365 VRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL 432 (450)
Q Consensus 365 v~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~ 432 (450)
+.-|.+..=+++|.++.+|..|-+..+.+...+.+- .....+...+..= .+.+|++|-.+.+.++.
T Consensus 1045 L~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp-elw~~~fRvmDDI-KEsVR~aa~~~~~~lsK 1110 (1702)
T KOG0915|consen 1045 LVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP-ELWEAAFRVMDDI-KESVREAADKAARALSK 1110 (1702)
T ss_pred HHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 555555556899999999999877665332111111 2344444444332 24455555555554443
No 377
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=54.01 E-value=39 Score=28.93 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=52.4
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCC--hhhHHHHhccCCChHHHHHHHhc------CChHHHHHHHHHHHHhc
Q 041252 318 AVPQLVELLPSLDPDCLQLALCILDALSSL--PEGKLALKDCANTIPNTVRLLMR------VSEDCTQYALSILWSIC 387 (450)
Q Consensus 318 ~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e~r~~i~~~~g~i~~Lv~lL~~------~s~~~~e~A~~~L~~L~ 387 (450)
++..+..-|.+.++.++-.|+.+|..+..+ +.-+..+.. ...+..|++++.. .+..+++..+..+..-+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas-~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGK-FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 455667777788899999999999999875 445666766 5788899999963 35788888888776543
No 378
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=53.71 E-value=39 Score=37.67 Aligned_cols=146 Identities=18% Similarity=0.161 Sum_probs=93.2
Q ss_pred CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc-C-CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCC-h
Q 041252 191 GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM-Q-PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDF-R 267 (450)
Q Consensus 191 G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~-~-~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~-~ 267 (450)
..+|.|++.... .+...+.+=+.+|.+.-.+-. +..+. + +..+|.|++.|+-.+..+|..+..+|..+....+. .
T Consensus 867 ~ivP~l~~~~~t-~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFET-APGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhcc-CCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 457888887763 244566666666666333222 23332 2 56789999999999999999998888877533322 1
Q ss_pred hhHhhhhhHHHHHHHHHhcCCC--ccchhHHHHHHHHhcc-ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHH
Q 041252 268 PEIVSSHRLLIGLMRLVKNKRH--PNGILPGLSLLRSICL-LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCI 340 (450)
Q Consensus 268 ~~~~~~~g~l~~Lv~lL~~~~~--~~~~~~al~aL~~Ls~-~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~ 340 (450)
.+ .-.-++|.++.+=++..+ ..++..|+.+|..|.. .+.+.-.--...++.+|...|.+...-+++.|+.+
T Consensus 945 t~--~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TE--HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hH--HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 11 112356666665444321 4567899999999985 44444344445677788888887776777777643
No 379
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.53 E-value=11 Score=30.36 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=22.6
Q ss_pred CCeeeCcCCCCCC----CCCeeCC-CCCcccHHHHHH
Q 041252 67 PSVFVCPISLEPM----QDPVTLC-TGQTYERSNILK 98 (450)
Q Consensus 67 p~~~~Cpi~~~~m----~dPv~~~-~g~ty~r~~I~~ 98 (450)
-..-+||-|+.-| ++|++.| ||.+|-|+.+++
T Consensus 7 GtKridPetg~KFYDLNrdPiVsPytG~s~P~s~fe~ 43 (129)
T COG4530 7 GTKRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEE 43 (129)
T ss_pred cccccCccccchhhccCCCccccCcccccchHHHHHh
Confidence 3456799998665 4687766 888887766554
No 380
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.00 E-value=1e+02 Score=35.42 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=91.0
Q ss_pred CccchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcC-CCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHH
Q 041252 289 HPNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLP-SLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTV 365 (450)
Q Consensus 289 ~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~-~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv 365 (450)
+|..+.+|.-||..+. .+.+.+.. .+|.|+.+|. ++++-++-+++-++.-|+-. |.--.. --+.|.
T Consensus 936 dp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~------~T~~Ly 1004 (1251)
T KOG0414|consen 936 DPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEP------WTEHLY 1004 (1251)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhcccccch------hhHHHH
Confidence 5667888888888775 34444332 4678889986 67889999999888888754 322222 234677
Q ss_pred HHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 366 RLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 366 ~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
.-|...+..+++.|+-+|.+|-..+ .+.-.|-+......+..+ +++++..|....+-++.-
T Consensus 1005 ~rL~D~~~~vRkta~lvlshLILnd------miKVKGql~eMA~cl~D~-~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLILND------MIKVKGQLSEMALCLEDP-NAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhh------hhHhcccHHHHHHHhcCC-cHHHHHHHHHHHHHhhhc
Confidence 7777889999999999999987653 122368888888888887 788888888666655543
No 381
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=52.94 E-value=5.6 Score=39.45 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=34.9
Q ss_pred eeeCcCCCCCCCC--C--eeCCCCCcccHHHHHHHHhc-CCCCCCCcC
Q 041252 69 VFVCPISLEPMQD--P--VTLCTGQTYERSNILKWFSL-GRYTCPTTM 111 (450)
Q Consensus 69 ~~~Cpi~~~~m~d--P--v~~~~g~ty~r~~I~~~~~~-~~~~cP~~~ 111 (450)
.+.|-.|++.+-- - --++|.|.|--.|..+++.+ +..+||.|+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4679999988652 2 24799999999999999875 467899997
No 382
>PHA03096 p28-like protein; Provisional
Probab=52.19 E-value=8.5 Score=37.22 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=30.6
Q ss_pred eeCcCCCCCCCC-Ce------e-CCCCCcccHHHHHHHHhcC--CCCCCCcCC
Q 041252 70 FVCPISLEPMQD-PV------T-LCTGQTYERSNILKWFSLG--RYTCPTTMQ 112 (450)
Q Consensus 70 ~~Cpi~~~~m~d-Pv------~-~~~g~ty~r~~I~~~~~~~--~~~cP~~~~ 112 (450)
-.|-||.+.-.+ |. + -.|.|+||-.||..|-... ..+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 579999975432 22 3 3599999999999998753 345777654
No 383
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=50.68 E-value=76 Score=34.51 Aligned_cols=105 Identities=16% Similarity=0.027 Sum_probs=70.4
Q ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHh------cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC---
Q 041252 277 LIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVS------IGAVPQLVELLPSLDPDCLQLALCILDALSSL--- 347 (450)
Q Consensus 277 l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~------~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~--- 347 (450)
+..++.+|.++ +-..+...+.++.|+..+-.-..++++ ...+..|++-+.+.++-++..|+..+..++.-
T Consensus 301 ~~~~~~LLdse-s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk 379 (1128)
T COG5098 301 YEHFDELLDSE-SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK 379 (1128)
T ss_pred HHHHHHHhccc-chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc
Confidence 45666777765 455666777888888643322223443 23455666667888899999999999888754
Q ss_pred -hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252 348 -PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK 388 (450)
Q Consensus 348 -~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 388 (450)
+..|..+.+ .+++-+...+.-++++|+..+..|-.
T Consensus 380 ~~~~r~ev~~------lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 380 TVGRRHEVIR------LVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred ccchHHHHHH------HHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 334444543 56677777788888888888876643
No 384
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=49.33 E-value=7.6 Score=26.97 Aligned_cols=13 Identities=31% Similarity=0.912 Sum_probs=11.5
Q ss_pred CCCCeeeCcCCCC
Q 041252 65 EIPSVFVCPISLE 77 (450)
Q Consensus 65 ~~p~~~~Cpi~~~ 77 (450)
++|+++.||+|+.
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 6899999999975
No 385
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=49.32 E-value=57 Score=32.29 Aligned_cols=75 Identities=19% Similarity=0.348 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhcCCCchhhhhccCC--CchHHHHHHhcCC---CHHHHHHHHHHHHHHhccCCChhhHhhh------hhH
Q 041252 208 VGSEAVGVLVNLTLDSESKTNLMQP--AKVSLLVDMLNEG---SVETKINCTRLIEKLMEEKDFRPEIVSS------HRL 276 (450)
Q Consensus 208 v~~~Al~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~~---~~~~~~~aa~~L~~La~~~~~~~~~~~~------~g~ 276 (450)
++-.|+..+..+..+...-..+... ..+..|++++..+ ..+++..|..+|..++........++.. +|+
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 4445666666656555566666554 4999999999865 5788999999999998766555554432 455
Q ss_pred HHHHHH
Q 041252 277 LIGLMR 282 (450)
Q Consensus 277 l~~Lv~ 282 (450)
+..+++
T Consensus 318 L~~llR 323 (329)
T PF06012_consen 318 LPQLLR 323 (329)
T ss_pred HHHHHH
Confidence 555554
No 386
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=48.68 E-value=4.3e+02 Score=29.52 Aligned_cols=220 Identities=14% Similarity=0.113 Sum_probs=107.9
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccC
Q 041252 152 SELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQ 231 (450)
Q Consensus 152 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~ 231 (450)
+.++..++.....++.+-...+..+-...+.........-.+|.++.+-... .-.++...+..+..++.... ..++.
T Consensus 440 p~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~--~~~~~ 516 (759)
T KOG0211|consen 440 PLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG--VEFFD 516 (759)
T ss_pred hhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh--hHHhh
Confidence 3344455555556666555444322221111112222222234444433221 22344444444444443222 22222
Q ss_pred CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc---cChH
Q 041252 232 PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC---LLNE 308 (450)
Q Consensus 232 ~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls---~~~~ 308 (450)
.-.-+.+...|.+...++++.|+..+..++........ ..-.++.++.+..++ +--.+...+.++..|+ +.+
T Consensus 517 ~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~---~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~e- 591 (759)
T KOG0211|consen 517 EKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWA---RLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQE- 591 (759)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchh---HHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccH-
Confidence 22233333334444568899999888888643321111 123345555554443 2334444444444443 333
Q ss_pred HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 041252 309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI 386 (450)
Q Consensus 309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L 386 (450)
+...-.+|.+.++..+..+.++-++++.|..+-..-.. ...+ .-..|.+..+-...+..++-.|.-++..+
T Consensus 592 ----i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~--~~~~-~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 592 ----ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE--SVRD-EEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred ----HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch--HHHH-HHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 33334568899999988999999999999887654111 2222 23344555555555555655555554443
No 387
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=48.43 E-value=7.6 Score=26.46 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=22.2
Q ss_pred eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 84 TLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 84 ~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
+.+..|-.|..|+..-+.. +..||.|+.+++.
T Consensus 16 i~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred eeecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 4456788999999988886 6789999998864
No 388
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=47.54 E-value=14 Score=40.12 Aligned_cols=39 Identities=5% Similarity=-0.101 Sum_probs=32.6
Q ss_pred cCCCCeeeCcCCCCCCCCCe----eCC---CCCcccHHHHHHHHhc
Q 041252 64 AEIPSVFVCPISLEPMQDPV----TLC---TGQTYERSNILKWFSL 102 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv----~~~---~g~ty~r~~I~~~~~~ 102 (450)
...+..-+|++|.--+.+|+ +.+ |+|.||-.||..|...
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~Dq 136 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQ 136 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHH
Confidence 46677889999999999966 344 8999999999999874
No 389
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=47.34 E-value=2.8e+02 Score=33.16 Aligned_cols=104 Identities=19% Similarity=0.174 Sum_probs=61.3
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHH-HHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhc-CCCchhhhh
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARK-TMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNL-TLDSESKTN 228 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~-~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~L-s~~~~~k~~ 228 (450)
+..++..|.+.....|.+|+++|..++..++.... --++.|+. -++..+ +..|++.|+..+.-. ..+++.-..
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh---~R~~Ds--sasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH---GRLNDS--SASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH---Hhhccc--hhHHHHHHHHHHhhhhhccHHHHHH
Confidence 44566667777788999999999999877653311 11222222 133332 467899999888752 222222111
Q ss_pred ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC
Q 041252 229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK 264 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~ 264 (450)
.-..+..-.......+|..+..+++.++...
T Consensus 893 -----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~ 923 (1692)
T KOG1020|consen 893 -----YYDQIIERILDTGVSVRKRVIKILRDICEET 923 (1692)
T ss_pred -----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhC
Confidence 1222333333456778888888888887544
No 390
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=47.09 E-value=12 Score=27.36 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=9.5
Q ss_pred cccHHHHHHHHhc
Q 041252 90 TYERSNILKWFSL 102 (450)
Q Consensus 90 ty~r~~I~~~~~~ 102 (450)
-|||.|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999874
No 391
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.08 E-value=9.4 Score=36.38 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=20.7
Q ss_pred cccHHHHHHHHhc------------CCCCCCCcCCcCCC
Q 041252 90 TYERSNILKWFSL------------GRYTCPTTMQELWD 116 (450)
Q Consensus 90 ty~r~~I~~~~~~------------~~~~cP~~~~~l~~ 116 (450)
-.||+|+.+|+.. |+.+||.|++.++-
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 3578999999852 35689999988764
No 392
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=47.07 E-value=11 Score=22.22 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=5.1
Q ss_pred eCcCCCCCC
Q 041252 71 VCPISLEPM 79 (450)
Q Consensus 71 ~Cpi~~~~m 79 (450)
.||-|....
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 366666544
No 393
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=46.99 E-value=7.9 Score=26.50 Aligned_cols=13 Identities=31% Similarity=0.912 Sum_probs=8.6
Q ss_pred CCCCeeeCcCCCC
Q 041252 65 EIPSVFVCPISLE 77 (450)
Q Consensus 65 ~~p~~~~Cpi~~~ 77 (450)
++|+++.||+|.-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 7899999999974
No 394
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=46.35 E-value=3e+02 Score=27.12 Aligned_cols=155 Identities=18% Similarity=0.181 Sum_probs=103.1
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHhc-cC-CChhhHhhhhh-HHHHHHHHHhcC----CC--------ccchhHHHHH
Q 041252 235 VSLLVDMLNEGSVETKINCTRLIEKLME-EK-DFRPEIVSSHR-LLIGLMRLVKNK----RH--------PNGILPGLSL 299 (450)
Q Consensus 235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~-~~-~~~~~~~~~~g-~l~~Lv~lL~~~----~~--------~~~~~~al~a 299 (450)
+..+.+.|++........+..+|.+++. ++ ....++...-. -.+.+.+++... .. ++++......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6777777877777777777888888876 33 22233333322 234455555321 01 1455566665
Q ss_pred HHHhc--cChHHHHHHHh-cCCHHHHHHhcCCCChhHHHHHHHHHHH-hcCC----hhhHHHHhccCCChHHHHHHHhcC
Q 041252 300 LRSIC--LLNEVRSLVVS-IGAVPQLVELLPSLDPDCLQLALCILDA-LSSL----PEGKLALKDCANTIPNTVRLLMRV 371 (450)
Q Consensus 300 L~~Ls--~~~~~~~~iv~-~G~v~~Lv~lL~~~~~~~~~~al~~L~~-L~~~----~e~r~~i~~~~g~i~~Lv~lL~~~ 371 (450)
+..+. .++..+..+.+ .+.+..+..-|...+.++....+.+|.. +... ...|..+.. +..+..|+.+-...
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHHHhccc
Confidence 55554 46667877776 5778889999988888999999999984 3333 234555655 57889999977666
Q ss_pred Ch----HHHHHHHHHHHHhcccC
Q 041252 372 SE----DCTQYALSILWSICKIA 390 (450)
Q Consensus 372 s~----~~~e~A~~~L~~L~~~~ 390 (450)
.+ .+.+.+-..|..+|...
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCC
Confidence 66 88899999999998644
No 395
>PRK04023 DNA polymerase II large subunit; Validated
Probab=46.31 E-value=30 Score=38.95 Aligned_cols=53 Identities=8% Similarity=-0.047 Sum_probs=28.6
Q ss_pred eeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC---CCCcchHHHHHHHHHH
Q 041252 70 FVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD---DSVTPNKTLYHLIHTW 132 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~---~~l~~n~~L~~~I~~w 132 (450)
|.||-|+.. . ....||..| .+.. +...||.|+..... ..+.....++++.+..
T Consensus 639 frCP~CG~~-T------e~i~fCP~C--G~~~-~~y~CPKCG~El~~~s~~~i~l~~~~~~A~~~l 694 (1121)
T PRK04023 639 RRCPFCGTH-T------EPVYRCPRC--GIEV-EEDECEKCGREPTPYSKRKIDLKELYDRALENL 694 (1121)
T ss_pred ccCCCCCCC-C------CcceeCccc--cCcC-CCCcCCCCCCCCCccceEEecHHHHHHHHHHHh
Confidence 556666654 1 123578888 2222 34679999987654 2233333445554444
No 396
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=46.18 E-value=3.1e+02 Score=29.51 Aligned_cols=111 Identities=24% Similarity=0.297 Sum_probs=69.1
Q ss_pred hhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHh-hhCCCCChhhHHHHHHHHHhc---CCC
Q 041252 147 VQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISS-LLGPFTSHAVGSEAVGVLVNL---TLD 222 (450)
Q Consensus 147 ~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~-lL~~~~~~~v~~~Al~~L~~L---s~~ 222 (450)
+++.+..++..+.+.+..+|...+.-|+.+...=.+ -....-.|.+..|.. ++.. ...++.+|+.+|..+ +.+
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR--E~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR--EKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHhccCC
Confidence 456667777777777788999999988877632111 123444565655553 4433 357899999988864 444
Q ss_pred chhhhhccCCCchHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCChhhH
Q 041252 223 SESKTNLMQPAKVSLLVDMLNEG-SVETKINCTRLIEKLMEEKDFRPEI 270 (450)
Q Consensus 223 ~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~ 270 (450)
++|+. ...++.+++.. +.++|.. +|.++..++....-+
T Consensus 166 een~~-------~n~l~~~vqnDPS~EVRr~---allni~vdnsT~p~I 204 (885)
T COG5218 166 EENRI-------VNLLKDIVQNDPSDEVRRL---ALLNISVDNSTYPCI 204 (885)
T ss_pred hHHHH-------HHHHHHHHhcCcHHHHHHH---HHHHeeeCCCcchhH
Confidence 45442 34666677654 6777776 566776555444333
No 397
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=45.86 E-value=3.3e+02 Score=27.45 Aligned_cols=128 Identities=16% Similarity=0.095 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHh----c-CCCccchhHHHHHHHHhccChHH------------
Q 041252 247 VETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK----N-KRHPNGILPGLSLLRSICLLNEV------------ 309 (450)
Q Consensus 247 ~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~----~-~~~~~~~~~al~aL~~Ls~~~~~------------ 309 (450)
..-|..|+..|+.|+...+ ..+..- +...+-.+|. + ..++..+..|+..+..|+.-...
T Consensus 225 ~TrR~AA~dfl~~L~~~~~--~~v~~i--~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFE--KQVTSI--LMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHH--HHHHHH--HHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred CCcHHHHHHHHHHHHHHHh--HHHHHH--HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 4456778888999975321 111111 1122222333 1 22445566888888888744322
Q ss_pred -HHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252 310 -RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL 383 (450)
Q Consensus 310 -~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L 383 (450)
-..+...-++|-|. -=.+..+-++..|++.+...... -.+..+. +.+|.+++.|.+.+.-+..+|+.++
T Consensus 301 ~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~-l~~~~l~---~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQ-LPKEQLL---QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGG-S-HHHHH---HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhh-CCHHHHH---HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 22333333444443 11133567888888888877654 2334443 4799999999998888888887654
No 398
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.83 E-value=1.2e+02 Score=31.69 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=83.2
Q ss_pred hhhHHHHHHHHHhc-CCCc--cchhHHHHHHHHhccC-hHHHHHHHhcCCHHHHHH-hcCCCChhHHHHHHHHHHHhcCC
Q 041252 273 SHRLLIGLMRLVKN-KRHP--NGILPGLSLLRSICLL-NEVRSLVVSIGAVPQLVE-LLPSLDPDCLQLALCILDALSSL 347 (450)
Q Consensus 273 ~~g~l~~Lv~lL~~-~~~~--~~~~~al~aL~~Ls~~-~~~~~~iv~~G~v~~Lv~-lL~~~~~~~~~~al~~L~~L~~~ 347 (450)
..|.+..++..+.. ..+| ..+..|++.|.|.+.. ++-+...... .+..++. +....+.++.-.++..|..+...
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 45555555544432 2233 3456888889988854 4433333322 1223333 33444688998899888887765
Q ss_pred hhhHHHHhccCCChHHHH---HHHhcCChHHHHHHHHHHHHhcccC---chhHHHHHHhcChHHHHHHHHHcCCCHHHHH
Q 041252 348 PEGKLALKDCANTIPNTV---RLLMRVSEDCTQYALSILWSICKIA---PEECSSAAVDAGLAAKLFLVIQSGCNPVLKQ 421 (450)
Q Consensus 348 ~e~r~~i~~~~g~i~~Lv---~lL~~~s~~~~e~A~~~L~~L~~~~---~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~ 421 (450)
-.++... .+-++.-+ .+..+..++.+-.|...+..|+... .+..-.+.+..+. .+++..++.. .+..-.
T Consensus 331 ~~~~~l~---~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~-~~lllhl~d~-~p~va~ 405 (533)
T KOG2032|consen 331 ASNDDLE---SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRL-APLLLHLQDP-NPYVAR 405 (533)
T ss_pred hhhcchh---hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcc-ccceeeeCCC-ChHHHH
Confidence 4444322 23333333 3334445666666665555554433 2221112233333 4566666666 676667
Q ss_pred HHHHHHHHHHhh
Q 041252 422 RSAELLKLCSLN 433 (450)
Q Consensus 422 ~A~~lL~~ls~~ 433 (450)
++...++.|..|
T Consensus 406 ACr~~~~~c~p~ 417 (533)
T KOG2032|consen 406 ACRSELRTCYPN 417 (533)
T ss_pred HHHHHHHhcCch
Confidence 777788877766
No 399
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=44.66 E-value=15 Score=29.46 Aligned_cols=37 Identities=19% Similarity=0.423 Sum_probs=24.9
Q ss_pred cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252 64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 114 (450)
..+|..|.||-|++ ..=||.+ .| ..++..||.|+...
T Consensus 16 ~klpt~f~CP~Cge-~~v~v~~------~k-------~~~h~~C~~CG~y~ 52 (99)
T PRK14892 16 PKLPKIFECPRCGK-VSISVKI------KK-------NIAIITCGNCGLYT 52 (99)
T ss_pred cCCCcEeECCCCCC-eEeeeec------CC-------CcceEECCCCCCcc
Confidence 47789999999995 3333333 22 13577899998754
No 400
>PRK05978 hypothetical protein; Provisional
Probab=44.65 E-value=14 Score=31.91 Aligned_cols=46 Identities=15% Similarity=0.253 Sum_probs=29.7
Q ss_pred CCCCcchHHHHHhhhccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 48 VGERLDLKKMIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
..+||-...++.-+. -.||-|++ |+-|. .+++- +..||.|++++..
T Consensus 19 ~~~r~~~~~~~rGl~-------grCP~CG~----------G~LF~-----g~Lkv-~~~C~~CG~~~~~ 64 (148)
T PRK05978 19 LEKRPVGRAMWRGFR-------GRCPACGE----------GKLFR-----AFLKP-VDHCAACGEDFTH 64 (148)
T ss_pred cccCchHHHHHHHHc-------CcCCCCCC----------Ccccc-----ccccc-CCCccccCCcccc
Confidence 345554444444333 57999997 56663 45554 7889999998865
No 401
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.55 E-value=2.2e+02 Score=27.92 Aligned_cols=132 Identities=18% Similarity=0.184 Sum_probs=75.2
Q ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhh-HHHH
Q 041252 277 LIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEG-KLAL 354 (450)
Q Consensus 277 l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~-r~~i 354 (450)
+...+..|.++ +......++..+..|+ .|.+....+.. ..|..++.-+.+....+...|+.++..+.+.-.+ ....
T Consensus 90 l~~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34344445554 4566667777777777 44443333332 3566777777777788899999999888765222 2222
Q ss_pred hccCCChHHHHHHHhcCC---hHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHH
Q 041252 355 KDCANTIPNTVRLLMRVS---EDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSA 424 (450)
Q Consensus 355 ~~~~g~i~~Lv~lL~~~s---~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~ 424 (450)
.+ ..+..++.+.+ .-+.+.|-.+|.++..+.... -+++.|...+++. .+.++.+++
T Consensus 168 ld-----~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~--------~~L~~L~~~~~~~-n~r~r~~a~ 226 (334)
T KOG2933|consen 168 LD-----DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ--------KLLRKLIPILQHS-NPRVRAKAA 226 (334)
T ss_pred HH-----HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH--------HHHHHHHHHHhhh-chhhhhhhh
Confidence 22 13334444433 356788888888776654311 2344555555554 455555444
No 402
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=44.02 E-value=2.9e+02 Score=26.33 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=26.8
Q ss_pred HHHHHHhhCChH-HHHhhhCCCC-ChhhHHHHHHHHHhcCC
Q 041252 183 ARKTMVDEGGVA-LISSLLGPFT-SHAVGSEAVGVLVNLTL 221 (450)
Q Consensus 183 ~r~~i~~~G~i~-~Lv~lL~~~~-~~~v~~~Al~~L~~Ls~ 221 (450)
.+..+.+.+.++ =|+.+|.+.. +..+...++.+|.+|..
T Consensus 32 v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 32 VRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCC
Confidence 456666666665 4666665432 56788889999999876
No 403
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=43.75 E-value=16 Score=24.88 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=17.5
Q ss_pred CeeCCCCC-----cccHHHHHHHHhc-CCCCCCCc
Q 041252 82 PVTLCTGQ-----TYERSNILKWFSL-GRYTCPTT 110 (450)
Q Consensus 82 Pv~~~~g~-----ty~r~~I~~~~~~-~~~~cP~~ 110 (450)
|.+.||+- ..=++|+++|+.. +..+|+.|
T Consensus 13 ~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 13 PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp -EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67777653 3457899999984 56678876
No 404
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.67 E-value=5.5e+02 Score=29.32 Aligned_cols=117 Identities=15% Similarity=0.007 Sum_probs=68.6
Q ss_pred CCchHHHHHHhc------CC--CHHHHHHHHHHHHHHhcc---CCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHH
Q 041252 232 PAKVSLLVDMLN------EG--SVETKINCTRLIEKLMEE---KDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL 300 (450)
Q Consensus 232 ~g~i~~Lv~lL~------~~--~~~~~~~aa~~L~~La~~---~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL 300 (450)
.+.++.++++|. .. ++.-+..|..++.+|++- ++.-+.. .+.=+...++..++++ .--.+..|++.+
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~-~g~Lrarac~vl 486 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSP-YGYLRARACWVL 486 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCc-hhHHHHHHHHHH
Confidence 677888888887 22 456667777777777631 1111111 1112233444444543 234677888999
Q ss_pred HHhc----cChHHHHHHHhcCCHHHHHHhcC-CCChhHHHHHHHHHHHhcCC-hhhHHHHh
Q 041252 301 RSIC----LLNEVRSLVVSIGAVPQLVELLP-SLDPDCLQLALCILDALSSL-PEGKLALK 355 (450)
Q Consensus 301 ~~Ls----~~~~~~~~iv~~G~v~~Lv~lL~-~~~~~~~~~al~~L~~L~~~-~e~r~~i~ 355 (450)
...| .++.+-.. ++......|. +.+..++-.|+-+|..+-.+ +.....+.
T Consensus 487 ~~~~~~df~d~~~l~~-----ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 487 SQFSSIDFKDPNNLSE-----ALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHHHhccCCChHHHHH-----HHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 8888 22333333 3445566665 67788999999999888766 33434444
No 405
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=41.85 E-value=31 Score=24.41 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=21.2
Q ss_pred CCcccHHHHHHHHhcCCCCCCCcCCcCCCC
Q 041252 88 GQTYERSNILKWFSLGRYTCPTTMQELWDD 117 (450)
Q Consensus 88 g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 117 (450)
-.|||..|-+.-+ +..||.|+-.|...
T Consensus 28 ECTFC~~C~e~~l---~~~CPNCgGelv~R 54 (57)
T PF06906_consen 28 ECTFCADCAETML---NGVCPNCGGELVRR 54 (57)
T ss_pred eCcccHHHHHHHh---cCcCcCCCCccccC
Confidence 4699999988876 36799999877543
No 406
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=41.83 E-value=92 Score=33.56 Aligned_cols=142 Identities=20% Similarity=0.193 Sum_probs=71.0
Q ss_pred CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC-CChhhHhhhhhHHHHHHHHHhcC---CCccchhHHHHHHHHhc---
Q 041252 232 PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK-DFRPEIVSSHRLLIGLMRLVKNK---RHPNGILPGLSLLRSIC--- 304 (450)
Q Consensus 232 ~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~-~~~~~~~~~~g~l~~Lv~lL~~~---~~~~~~~~al~aL~~Ls--- 304 (450)
..++..+.+++.++.....+ |+.+|..|.... .. ....+..+..+++.. .++.+...|+-++..|.
T Consensus 394 ~~av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~P------t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~ 466 (618)
T PF01347_consen 394 NPAVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRP------TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY 466 (618)
T ss_dssp HHHHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCC------CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence 45688888888775443333 556666664322 11 123455566665532 23445555555555553
Q ss_pred -cCh------HHHHHHHhcCCHHHHHHhcC----CCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC--
Q 041252 305 -LLN------EVRSLVVSIGAVPQLVELLP----SLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV-- 371 (450)
Q Consensus 305 -~~~------~~~~~iv~~G~v~~Lv~lL~----~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~-- 371 (450)
... ..+...+..-.++.|...+. ..+.+.+..++.+|.|+-. + ..++.|...+...
T Consensus 467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-~----------~~i~~l~~~i~~~~~ 535 (618)
T PF01347_consen 467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-P----------ESIPVLLPYIEGKEE 535 (618)
T ss_dssp HTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--G----------GGHHHHHTTSTTSS-
T ss_pred eecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-c----------hhhHHHHhHhhhccc
Confidence 331 11122223345666666664 3466788889999999853 2 3444555554443
Q ss_pred -ChHHHHHHHHHHHHhcccCc
Q 041252 372 -SEDCTQYALSILWSICKIAP 391 (450)
Q Consensus 372 -s~~~~e~A~~~L~~L~~~~~ 391 (450)
+..++-.|+.+|..+....+
T Consensus 536 ~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 536 VPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp S-HHHHHHHHHTTTTGGGT-H
T ss_pred cchHHHHHHHHHHHHHhhcCc
Confidence 34556666666665545444
No 407
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=41.27 E-value=14 Score=33.57 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=35.5
Q ss_pred eeCcCCCCCCCCCee-CCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252 70 FVCPISLEPMQDPVT-LCTGQTYERSNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 114 (450)
..|.+|+.+.-.-+- -.||-.|-+.||.+++.+ ...||.|+.-.
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhccc
Confidence 589999998766553 347888999999999998 78899997533
No 408
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=40.96 E-value=2.1e+02 Score=23.86 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=48.3
Q ss_pred CCCcchHHHHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHH-cHHHHHHHHhh-CChH
Q 041252 117 DSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAA-HASARKTMVDE-GGVA 194 (450)
Q Consensus 117 ~~l~~n~~L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~r~~i~~~-G~i~ 194 (450)
....|-..+.+ |.+|.-.+. .......+.|.+.|.+.+..++.++|+.|..++.. ++..+..+.+. -.|.
T Consensus 14 ~~p~pgy~~~E-ia~~t~~s~-------~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik 85 (122)
T cd03572 14 DEPTPGYLYEE-IAKLTRKSV-------GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIR 85 (122)
T ss_pred CCCCchHHHHH-HHHHHHcCH-------HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHH
Confidence 34556565655 555544421 11223456778888887888999999999999974 45666666654 3455
Q ss_pred HHHhhhC
Q 041252 195 LISSLLG 201 (450)
Q Consensus 195 ~Lv~lL~ 201 (450)
.+..+=.
T Consensus 86 ~~~~f~g 92 (122)
T cd03572 86 ECANYKG 92 (122)
T ss_pred HHHHcCC
Confidence 5554433
No 409
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=40.94 E-value=14 Score=23.27 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=7.4
Q ss_pred CCCCCCcCCc
Q 041252 104 RYTCPTTMQE 113 (450)
Q Consensus 104 ~~~cP~~~~~ 113 (450)
...||.|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 3579999864
No 410
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=40.71 E-value=13 Score=35.36 Aligned_cols=48 Identities=23% Similarity=0.521 Sum_probs=30.2
Q ss_pred CCCCeeeCcCCCCCCCC---------CeeCC-----CCCcccHHHHHHHHhcC---------CCCCCCcCCcCCC
Q 041252 65 EIPSVFVCPISLEPMQD---------PVTLC-----TGQTYERSNILKWFSLG---------RYTCPTTMQELWD 116 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~d---------Pv~~~-----~g~ty~r~~I~~~~~~~---------~~~cP~~~~~l~~ 116 (450)
+-+..|.|++|..++.. .-+++ ||.-|.|- |+-+| .+.||.|++.|.+
T Consensus 157 ~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRP----WLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 157 DSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRP----WLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred cccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccch----HHhhcccccccCCCCccCCcccchhcc
Confidence 33677899999887653 11233 45555554 55443 2569999887765
No 411
>PLN03086 PRLI-interacting factor K; Provisional
Probab=40.17 E-value=31 Score=36.66 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=27.6
Q ss_pred CCCCeeeCcCCCCCCC------------CCeeCCCCCcccHHHHHHHHhcC----CCCCCCcCCcCC
Q 041252 65 EIPSVFVCPISLEPMQ------------DPVTLCTGQTYERSNILKWFSLG----RYTCPTTMQELW 115 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~------------dPv~~~~g~ty~r~~I~~~~~~~----~~~cP~~~~~l~ 115 (450)
.++.++.||.|++.|. .|+.-+||..+.|..+.++.... ...|+.|+..++
T Consensus 449 el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~ 515 (567)
T PLN03086 449 EAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQ 515 (567)
T ss_pred ccccCccCCCCCCccchHHHHHHHHhcCCCccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCccc
Confidence 4455667777766543 23332366666666666664421 234666665553
No 412
>PRK12495 hypothetical protein; Provisional
Probab=39.83 E-value=13 Score=34.24 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=28.9
Q ss_pred CCcchHHHHHhhhccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHH
Q 041252 50 ERLDLKKMIAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSN 95 (450)
Q Consensus 50 ~~~~~~~~~~~~~~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~ 95 (450)
+|-..++|-+.|..+.-+..|.||.|+..+- .-.|.+||-.|
T Consensus 23 ~R~~~~~ma~lL~~gatmsa~hC~~CG~PIp----a~pG~~~Cp~C 64 (226)
T PRK12495 23 KREATERMSELLLQGATMTNAHCDECGDPIF----RHDGQEFCPTC 64 (226)
T ss_pred HHHHHHHHHHHHHhhcccchhhcccccCccc----CCCCeeECCCC
Confidence 4556667777788888899999999997543 22455554444
No 413
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=39.79 E-value=7.5 Score=21.60 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=7.9
Q ss_pred eeCcCCCCCCCCC
Q 041252 70 FVCPISLEPMQDP 82 (450)
Q Consensus 70 ~~Cpi~~~~m~dP 82 (450)
|.||+|...|.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 4566666665554
No 414
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=39.00 E-value=24 Score=41.94 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=26.9
Q ss_pred CCCCeeeCcCCC--CCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 65 EIPSVFVCPISL--EPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 65 ~~p~~~~Cpi~~--~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
++|.||.||=|+ +...|. ...||+-. -...||.|+.++.
T Consensus 904 PL~phy~C~~C~~~ef~~~~-~~~sG~Dl-----------pdk~Cp~Cg~~~~ 944 (1437)
T PRK00448 904 PLPPHYVCPNCKYSEFFTDG-SVGSGFDL-----------PDKDCPKCGTKLK 944 (1437)
T ss_pred CCCccccCcccccccccccc-cccccccC-----------ccccCcccccccc
Confidence 888999999998 444454 23344433 3567999998754
No 415
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=38.04 E-value=2.7e+02 Score=29.22 Aligned_cols=114 Identities=23% Similarity=0.299 Sum_probs=69.6
Q ss_pred cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHH---hccCCChHHHHHHHhc-CChHHHHHHHHHHHHhcccC-
Q 041252 316 IGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLAL---KDCANTIPNTVRLLMR-VSEDCTQYALSILWSICKIA- 390 (450)
Q Consensus 316 ~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i---~~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~- 390 (450)
.+.|+.++..+. .+.+.+--++++. +..++.+..+ ....+.|+.|+.+|.. .+...+.+|..+|..+...+
T Consensus 20 ~~~v~~llkHI~--~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHID--TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcC--CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 345555555553 2334443333333 2223333333 2237999999999963 56788888988877764322
Q ss_pred -----------chhHHHHHHhcChHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhh
Q 041252 391 -----------PEECSSAAVDAGLAAKLFLVIQS-GCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 391 -----------~~~~~~~~~~~G~i~~L~~ll~s-~~~~~~k~~A~~lL~~ls~~ 433 (450)
++...+..+..-.+..|+..+-. .....+-.....++.+++.+
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 23345556667788888887753 22455667777788888777
No 416
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=37.57 E-value=46 Score=22.19 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=19.7
Q ss_pred CcCCCCCCCCCeeC---CCCCcccHHHHHHHHhcCC-CCCCCc
Q 041252 72 CPISLEPMQDPVTL---CTGQTYERSNILKWFSLGR-YTCPTT 110 (450)
Q Consensus 72 Cpi~~~~m~dPv~~---~~g~ty~r~~I~~~~~~~~-~~cP~~ 110 (450)
|-+|.++...=+.= .|+-.+=..|+..+|.... ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 44566655544432 3777788889999998643 369986
No 417
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=37.08 E-value=34 Score=28.99 Aligned_cols=55 Identities=16% Similarity=0.304 Sum_probs=36.5
Q ss_pred HHHhhhccCCCC-eeeCcCCCCCCCC--Cee-CCCC------CcccHHHHHHHHhcCCCCCCCcCC
Q 041252 57 MIAELDLAEIPS-VFVCPISLEPMQD--PVT-LCTG------QTYERSNILKWFSLGRYTCPTTMQ 112 (450)
Q Consensus 57 ~~~~~~~~~~p~-~~~Cpi~~~~m~d--Pv~-~~~g------~ty~r~~I~~~~~~~~~~cP~~~~ 112 (450)
.++++=...-|+ ..-|.||.+-..+ =|+ ++|| |-||.+|+.+|-.. ....|.-|.
T Consensus 13 ~l~~lf~~~w~~~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~-~~rDPfnR~ 77 (134)
T PF05883_consen 13 YLERLFNDQWPRCTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE-RNRDPFNRN 77 (134)
T ss_pred HHHHHHHHHccccCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh-ccCCCcccc
Confidence 333333334443 5779999988777 554 4676 45999999999543 556777654
No 418
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=37.06 E-value=27 Score=40.87 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=26.6
Q ss_pred CCCCeeeCcCCC--CCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 65 EIPSVFVCPISL--EPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 65 ~~p~~~~Cpi~~--~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
++|.||.||=|+ +...|. ...||+-. -...||.|+.++.
T Consensus 679 PL~phy~c~~c~~~ef~~~~-~~~sg~dl-----------p~k~cp~c~~~~~ 719 (1213)
T TIGR01405 679 PLPPHYLCPNCKYSEFITDG-SVGSGFDL-----------PDKDCPKCGAPLK 719 (1213)
T ss_pred CCcccccCcccccccccccc-cccccccC-----------ccccCcccccccc
Confidence 788899999998 444454 23344433 3567999998754
No 419
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=36.54 E-value=2.8e+02 Score=24.93 Aligned_cols=105 Identities=12% Similarity=0.099 Sum_probs=56.0
Q ss_pred HhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhC----C---------------hHHHHhhhCCCCChhhHHHHHHHHH
Q 041252 157 TLKKVKGQARVQALKELHQIAAAHASARKTMVDEG----G---------------VALISSLLGPFTSHAVGSEAVGVLV 217 (450)
Q Consensus 157 ~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G----~---------------i~~Lv~lL~~~~~~~v~~~Al~~L~ 217 (450)
.+.+++..+|..|+..|..+-.+...+=....+.. . -..|+..|....+..+....+++|.
T Consensus 48 il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la 127 (182)
T PF13251_consen 48 ILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLA 127 (182)
T ss_pred HHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34566777888888888877655432211111111 1 1234444444444455556666666
Q ss_pred hcCCCc-hhhhhccCCCchHHH----HHHhcCCCHHHHHHHHHHHHHHhccC
Q 041252 218 NLTLDS-ESKTNLMQPAKVSLL----VDMLNEGSVETKINCTRLIEKLMEEK 264 (450)
Q Consensus 218 ~Ls~~~-~~k~~i~~~g~i~~L----v~lL~~~~~~~~~~aa~~L~~La~~~ 264 (450)
.|.... -+|- ..|.++.+ ..++.+.+.+++..+..++..|.+..
T Consensus 128 ~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 128 VLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 654432 2221 23444444 44455677788888777777775443
No 420
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.47 E-value=7e+02 Score=28.51 Aligned_cols=235 Identities=15% Similarity=0.172 Sum_probs=121.9
Q ss_pred hhcHHHHHHHhhcc--------chHHHHHHHHHHHHHHHH---cHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHH
Q 041252 148 QGRASELLGTLKKV--------KGQARVQALKELHQIAAA---HASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVL 216 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~--------~~~~~~~Al~~L~~l~~~---~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L 216 (450)
++.+.-+++.|.+. +...+..|+..+..++.. ....+..+ +.=.+..+...+++. ..-.+..|++++
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~-~g~Lrarac~vl 486 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSP-YGYLRARACWVL 486 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCc-hhHHHHHHHHHH
Confidence 45555566666521 122345577777666632 22222222 222344555555554 456889999999
Q ss_pred HhcCCCc-hhhhhccCCCchHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCChhhHhhh--hhHHHHHHHHHhcCCCccc
Q 041252 217 VNLTLDS-ESKTNLMQPAKVSLLVDMLN-EGSVETKINCTRLIEKLMEEKDFRPEIVSS--HRLLIGLMRLVKNKRHPNG 292 (450)
Q Consensus 217 ~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~aa~~L~~La~~~~~~~~~~~~--~g~l~~Lv~lL~~~~~~~~ 292 (450)
..++.-+ .+...+ ..++......|. +.+..++..|+-+|..+.++.+...+.+.. .+.+..|+++.+.-. .+.
T Consensus 487 ~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E-nd~ 563 (1010)
T KOG1991|consen 487 SQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE-NDD 563 (1010)
T ss_pred HHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc-hhH
Confidence 9877322 222222 334666666676 667899999999999998776655454433 256667777665532 122
Q ss_pred hhHHHHHHHHhc--cChHHHHHHHh--cCCHHHHHHhcCC---C---ChhHHHHHHHHHHHhcC---ChhhHHHHh-cc-
Q 041252 293 ILPGLSLLRSIC--LLNEVRSLVVS--IGAVPQLVELLPS---L---DPDCLQLALCILDALSS---LPEGKLALK-DC- 357 (450)
Q Consensus 293 ~~~al~aL~~Ls--~~~~~~~~iv~--~G~v~~Lv~lL~~---~---~~~~~~~al~~L~~L~~---~~e~r~~i~-~~- 357 (450)
.. .++-.+. ..++...-.++ .......++++.. . +.+-.-.|.++|..+.+ .-+++..+. .-
T Consensus 564 Lt---~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le 640 (1010)
T KOG1991|consen 564 LT---NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLE 640 (1010)
T ss_pred HH---HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 22 2222222 12222222222 1233455556642 1 23344445555554432 122333222 11
Q ss_pred CCChHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 041252 358 ANTIPNTVRLLMRVSEDCTQYALSILWSICKIA 390 (450)
Q Consensus 358 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 390 (450)
.-.+|.+-..|.+.-...-+.+..++..++...
T Consensus 641 ~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~ 673 (1010)
T KOG1991|consen 641 PIVLPVIGFILKNDITDFYEELLEIVSSLTFLS 673 (1010)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 234555555556555677777777777766655
No 421
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=36.07 E-value=21 Score=38.69 Aligned_cols=9 Identities=33% Similarity=0.611 Sum_probs=4.4
Q ss_pred CCCCCcCCc
Q 041252 105 YTCPTTMQE 113 (450)
Q Consensus 105 ~~cP~~~~~ 113 (450)
.+||.|+.+
T Consensus 42 ~fC~~CG~~ 50 (645)
T PRK14559 42 AHCPNCGAE 50 (645)
T ss_pred ccccccCCc
Confidence 345555544
No 422
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=35.89 E-value=5.2e+02 Score=26.85 Aligned_cols=75 Identities=16% Similarity=0.101 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChH-HHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHH
Q 041252 162 KGQARVQALKELHQIAAAHASARKTMVDEGGVA-LISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD 240 (450)
Q Consensus 162 ~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~-~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~ 240 (450)
+.+.|..+++-|..+++..... .|+.. .....+......+.-..-+.+|..|+.+...- ...+.+..+.|..
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~------~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~~~~~~i~~~L~~ 114 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSS------SGLMRAEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-DFFEYEIGPFLLS 114 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccc------cHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-hhcccchHHHHHH
Confidence 4568888888888887654321 11111 12233343323344455666777666554333 3357788888888
Q ss_pred Hhc
Q 041252 241 MLN 243 (450)
Q Consensus 241 lL~ 243 (450)
.|.
T Consensus 115 wl~ 117 (464)
T PF11864_consen 115 WLE 117 (464)
T ss_pred HHH
Confidence 875
No 423
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=35.74 E-value=18 Score=24.43 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=8.5
Q ss_pred CCCCCCcCCcCC
Q 041252 104 RYTCPTTMQELW 115 (450)
Q Consensus 104 ~~~cP~~~~~l~ 115 (450)
...||.|+.++.
T Consensus 21 ~~~Cp~CG~~~~ 32 (46)
T PRK00398 21 GVRCPYCGYRIL 32 (46)
T ss_pred ceECCCCCCeEE
Confidence 456999987653
No 424
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=35.56 E-value=1.5e+02 Score=29.30 Aligned_cols=73 Identities=22% Similarity=0.176 Sum_probs=49.7
Q ss_pred HHHHHHHHhccChHHHHHHHhcC--CHHHHHHhcCCC---ChhHHHHHHHHHHHhcCChhhHHHHhc------cCCChHH
Q 041252 295 PGLSLLRSICLLNEVRSLVVSIG--AVPQLVELLPSL---DPDCLQLALCILDALSSLPEGKLALKD------CANTIPN 363 (450)
Q Consensus 295 ~al~aL~~Ls~~~~~~~~iv~~G--~v~~Lv~lL~~~---~~~~~~~al~~L~~L~~~~e~r~~i~~------~~g~i~~ 363 (450)
.|+..|..+.........+...+ .+..|+++++-+ ...++..|+.+|..++....-...+.+ ..|.++.
T Consensus 241 lAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~ 320 (329)
T PF06012_consen 241 LAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQ 320 (329)
T ss_pred HHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHH
Confidence 44444555556677788888776 999999999654 468999999999999975333333322 2356666
Q ss_pred HHHH
Q 041252 364 TVRL 367 (450)
Q Consensus 364 Lv~l 367 (450)
+++.
T Consensus 321 llR~ 324 (329)
T PF06012_consen 321 LLRK 324 (329)
T ss_pred HHHH
Confidence 6654
No 425
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=35.55 E-value=13 Score=20.42 Aligned_cols=12 Identities=33% Similarity=0.819 Sum_probs=5.6
Q ss_pred eeCcCCCCCCCC
Q 041252 70 FVCPISLEPMQD 81 (450)
Q Consensus 70 ~~Cpi~~~~m~d 81 (450)
|.||+|...+.+
T Consensus 1 ~~C~~C~~~~~~ 12 (24)
T PF13894_consen 1 FQCPICGKSFRS 12 (24)
T ss_dssp EE-SSTS-EESS
T ss_pred CCCcCCCCcCCc
Confidence 456666655444
No 426
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=35.45 E-value=6.3e+02 Score=27.66 Aligned_cols=225 Identities=10% Similarity=0.058 Sum_probs=107.7
Q ss_pred HHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC
Q 041252 185 KTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK 264 (450)
Q Consensus 185 ~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~ 264 (450)
+.++..-..+.|+..+.-. + .....+..+.-+...-+... .+.+.++.|+++..+.+..+|..-..-+......=
T Consensus 287 e~i~~~kvlp~Ll~~~~~g-~--a~~~~ltpl~k~~k~ld~~e--yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L 361 (690)
T KOG1243|consen 287 EEIIASKVLPILLAALEFG-D--AASDFLTPLFKLGKDLDEEE--YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL 361 (690)
T ss_pred HHHHHHHHHHHHHHHhhcc-c--cchhhhhHHHHhhhhccccc--cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc
Confidence 3344444566666666433 2 22223333332222111111 56778999999999999988877444443332111
Q ss_pred CChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHh
Q 041252 265 DFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDAL 344 (450)
Q Consensus 265 ~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L 344 (450)
-.+ ....-+++.+..-+.+. ++..++..+..+.-|+.--.-+ ...-..+..+..+-.+.+..++.+..-+|..+
T Consensus 362 --t~~-~~~d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki 435 (690)
T KOG1243|consen 362 --TKQ-ILNDQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKI 435 (690)
T ss_pred --CHH-hhcchhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeeccc
Confidence 111 22344567776666665 5777888887777776211111 11111223333333334445555554444444
Q ss_pred cCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHH
Q 041252 345 SSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSA 424 (450)
Q Consensus 345 ~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~ 424 (450)
+... .+.+++.--+-.+.+.+.+.-...+..++.+|+..+..-+.. . +..-+++.+.-+.... +..++..|-
T Consensus 436 ~~~l---~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~---~-va~kIlp~l~pl~vd~-e~~vr~~a~ 507 (690)
T KOG1243|consen 436 APHL---AASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS---E-VANKILPSLVPLTVDP-EKTVRDTAE 507 (690)
T ss_pred cccc---chhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh---h-hhhhccccccccccCc-ccchhhHHH
Confidence 4331 111111112223344445444566777777777766544321 1 2233445554444333 334444444
Q ss_pred HHHH
Q 041252 425 ELLK 428 (450)
Q Consensus 425 ~lL~ 428 (450)
..++
T Consensus 508 ~~i~ 511 (690)
T KOG1243|consen 508 KAIR 511 (690)
T ss_pred HHHH
Confidence 4333
No 427
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.94 E-value=94 Score=32.39 Aligned_cols=70 Identities=10% Similarity=0.063 Sum_probs=54.2
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcC-CCHHHHHHHHHHHHHH
Q 041252 361 IPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSG-CNPVLKQRSAELLKLC 430 (450)
Q Consensus 361 i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~-~~~~~k~~A~~lL~~l 430 (450)
+..|.+.+.+.++.++-.|+.+|-.+.+++.......+.+.+++.-++.+.... ....+|+++..+|.-=
T Consensus 40 vralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 40 VRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 445555566667899999999999888888766666778888999888887665 5678899988888763
No 428
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.50 E-value=3.9e+02 Score=28.64 Aligned_cols=122 Identities=16% Similarity=0.089 Sum_probs=71.4
Q ss_pred hhHHHHHHHH-HhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCChhhH
Q 041252 274 HRLLIGLMRL-VKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSL-DPDCLQLALCILDALSSLPEGK 351 (450)
Q Consensus 274 ~g~l~~Lv~l-L~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~-~~~~~~~al~~L~~L~~~~e~r 351 (450)
.|++..|+.. +++. +.+++++|..||.-+|..+.+ .++..+++|+.+ +.-++...+-+|..-|.....+
T Consensus 550 ~~vv~~lLh~avsD~-nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 550 LGVVSTLLHYAVSDG-NDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred chhHhhhheeecccC-chHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 3456666665 3443 677888888888877765433 455677777544 6677777777777666554332
Q ss_pred HHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhc-ccCchhHHHHHHhcChHHHHHHHHHcC
Q 041252 352 LALKDCANTIPNTVRLLMRVSEDCTQYALSILWSIC-KIAPEECSSAAVDAGLAAKLFLVIQSG 414 (450)
Q Consensus 352 ~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~-~~~~~~~~~~~~~~G~i~~L~~ll~s~ 414 (450)
.+ +..|-.++.....-+++.|+-++.-+. ++++ +..-. -.+++..+..++...
T Consensus 621 ~a-------~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~-~Lnp~--v~~I~k~f~~vI~~K 674 (926)
T COG5116 621 VA-------TDILEALMYDTNDFVRQSAMIAVGMILMQCNP-ELNPN--VKRIIKKFNRVIVDK 674 (926)
T ss_pred HH-------HHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc-ccChh--HHHHHHHHHHHHhhh
Confidence 22 223344555566778888877776554 3333 21000 135566666666444
No 429
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=33.03 E-value=43 Score=29.02 Aligned_cols=23 Identities=26% Similarity=0.655 Sum_probs=16.3
Q ss_pred CCCCcccHHHHHHHHh----------cCCCCCCCcCCc
Q 041252 86 CTGQTYERSNILKWFS----------LGRYTCPTTMQE 113 (450)
Q Consensus 86 ~~g~ty~r~~I~~~~~----------~~~~~cP~~~~~ 113 (450)
.+||+| +-||. .|--+||+|+..
T Consensus 9 ~~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 9 ENGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred CCCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCC
Confidence 368999 45664 345689999864
No 430
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=32.78 E-value=44 Score=27.27 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHH
Q 041252 207 AVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKI 251 (450)
Q Consensus 207 ~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~ 251 (450)
.-....+..+..|+..++.=..+++.|+++.|+.+|.++|.++..
T Consensus 61 ~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 61 VDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 345667788888898888777888999999999999998876543
No 431
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=32.56 E-value=21 Score=21.04 Aligned_cols=9 Identities=22% Similarity=0.899 Sum_probs=5.5
Q ss_pred eCcCCCCCC
Q 041252 71 VCPISLEPM 79 (450)
Q Consensus 71 ~Cpi~~~~m 79 (450)
.||||.+-|
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 466666655
No 432
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.88 E-value=2.2e+02 Score=33.68 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHH-HHHhcCCHHHHHHhcCC--CChhHHHHHHH--HHHHhcCC-
Q 041252 274 HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRS-LVVSIGAVPQLVELLPS--LDPDCLQLALC--ILDALSSL- 347 (450)
Q Consensus 274 ~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~-~iv~~G~v~~Lv~lL~~--~~~~~~~~al~--~L~~L~~~- 347 (450)
.+.+..++...+.+.+.++.-.|.+.+|+++..-.++. ..-+.+.-.-.++-+.+ ....+.-.+++ .+.+|+..
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~ 1006 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLC 1006 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHh
Confidence 36777777777777788889999999999985444422 22223333334444433 23344444444 34456544
Q ss_pred hhhHHHHhccCCChHHHHHHHhcCC
Q 041252 348 PEGKLALKDCANTIPNTVRLLMRVS 372 (450)
Q Consensus 348 ~e~r~~i~~~~g~i~~Lv~lL~~~s 372 (450)
++.|.+++. |+++.+.+.+.++.
T Consensus 1007 ~dsr~eVRn--gAvqtlfri~~Shg 1029 (1610)
T KOG1848|consen 1007 EDSRAEVRN--GAVQTLFRIFNSHG 1029 (1610)
T ss_pred ccchHHHhh--hHHHHHHHHHhhhc
Confidence 566777764 88999999887764
No 433
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=31.68 E-value=4.7e+02 Score=25.00 Aligned_cols=163 Identities=18% Similarity=0.150 Sum_probs=89.6
Q ss_pred ChhhHHHHHHHHHhcCCCchh--------hhhccCCCchHHHHHHhcCCC----HHHHHHHHHHHHHHhccCCChhhHhh
Q 041252 205 SHAVGSEAVGVLVNLTLDSES--------KTNLMQPAKVSLLVDMLNEGS----VETKINCTRLIEKLMEEKDFRPEIVS 272 (450)
Q Consensus 205 ~~~v~~~Al~~L~~Ls~~~~~--------k~~i~~~g~i~~Lv~lL~~~~----~~~~~~aa~~L~~La~~~~~~~~~~~ 272 (450)
+....+.++.+|..|....++ |-.+.=-+.+|.++..+..++ .+.....|..|..++.....
T Consensus 75 Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~------ 148 (262)
T PF14225_consen 75 SSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGL------ 148 (262)
T ss_pred CCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCC------
Confidence 335666777777776654332 111111234555555566555 13445667777777743221
Q ss_pred hhhHHHHHHHHHhcCCCc---cchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh
Q 041252 273 SHRLLIGLMRLVKNKRHP---NGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPE 349 (450)
Q Consensus 273 ~~g~l~~Lv~lL~~~~~~---~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e 349 (450)
+.+..++.....+... +....+...|+.-.. ++. +...+..|+++|..+..-++...+.+|..+-..-+
T Consensus 149 --~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d 220 (262)
T PF14225_consen 149 --PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVD 220 (262)
T ss_pred --ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcccc
Confidence 1123333333332221 122233333332221 111 23355689999998889999999999999988755
Q ss_pred hHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 041252 350 GKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI 386 (450)
Q Consensus 350 ~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L 386 (450)
.+.... +..|.++.+++... --..|+.+|-.+
T Consensus 221 ~~~~~~--~dlispllrlL~t~---~~~eAL~VLd~~ 252 (262)
T PF14225_consen 221 MRSPHG--ADLISPLLRLLQTD---LWMEALEVLDEI 252 (262)
T ss_pred CCCCcc--hHHHHHHHHHhCCc---cHHHHHHHHHHH
Confidence 555533 46799999998742 223355555544
No 434
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=31.50 E-value=37 Score=23.62 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=26.2
Q ss_pred CCeeeCcCCCCCCCCC-eeCCCCCcccHHHHHHH
Q 041252 67 PSVFVCPISLEPMQDP-VTLCTGQTYERSNILKW 99 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dP-v~~~~g~ty~r~~I~~~ 99 (450)
++-|.|-.|+..+.+. .....|.-||+.+..+-
T Consensus 24 ~~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~ 57 (58)
T PF00412_consen 24 PECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQKR 57 (58)
T ss_dssp TTTSBETTTTCBTTTSSEEEETTEEEEHHHHHHH
T ss_pred ccccccCCCCCccCCCeeEeECCEEECHHHHhhh
Confidence 4568999999888876 56678899999887653
No 435
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=31.34 E-value=1.1e+02 Score=31.30 Aligned_cols=62 Identities=18% Similarity=0.312 Sum_probs=37.9
Q ss_pred hhccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHh--cCCCCCCCcCCcCCC-CCCcchHHHHHHHHHHHH
Q 041252 61 LDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFS--LGRYTCPTTMQELWD-DSVTPNKTLYHLIHTWFS 134 (450)
Q Consensus 61 ~~~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~--~~~~~cP~~~~~l~~-~~l~~n~~L~~~I~~w~~ 134 (450)
++...=+..|.||+|+.-+. ---+.+-+. .+.+.|-.|+.++-. ..-.|+...+.....+..
T Consensus 120 ~~d~t~~~~Y~Cp~C~kkyt------------~Lea~~L~~~~~~~F~C~~C~gelveDe~~~~~~e~~~~l~~~~~ 184 (436)
T KOG2593|consen 120 LRDDTNVAGYVCPNCQKKYT------------SLEALQLLDNETGEFHCENCGGELVEDENKLPSKESRTALNRLME 184 (436)
T ss_pred hhhccccccccCCccccchh------------hhHHHHhhcccCceEEEecCCCchhcccccCchHHHHHHHHHHHH
Confidence 34457778999999987444 333334444 256789999888743 455566555544444433
No 436
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.11 E-value=25 Score=36.12 Aligned_cols=70 Identities=24% Similarity=0.385 Sum_probs=52.3
Q ss_pred cCCCCeeeCcCC-CCCCCCCeeC--CCCCcccHHHHHHHHhcC-CCCCCCcCCcCCCCCCcchHHHHHHHHHHHHh
Q 041252 64 AEIPSVFVCPIS-LEPMQDPVTL--CTGQTYERSNILKWFSLG-RYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQ 135 (450)
Q Consensus 64 ~~~p~~~~Cpi~-~~~m~dPv~~--~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~ 135 (450)
...++...||+| .+.|.|-+++ +|..+||-.||.+.+..+ ...|+.|+. ....+.++..++..+..-.+.
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~--~~~~~~~p~~~r~~~n~~~a~ 287 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNV--LADDLLPPKTLRDTINRILAS 287 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhcc--cccccCCchhhHHHHHHHHhh
Confidence 578899999999 8999999887 589999999999987753 233555543 235667777777777665554
No 437
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.48 E-value=8e+02 Score=27.37 Aligned_cols=65 Identities=25% Similarity=0.261 Sum_probs=45.9
Q ss_pred HHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC
Q 041252 196 ISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD 265 (450)
Q Consensus 196 Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~ 265 (450)
+-+.|++. .+.+.-+|..++.+|.... - ....+ +++.|--++++...-.|-.|..+|..++....
T Consensus 250 l~s~l~~K-~emV~~EaArai~~l~~~~--~-r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 250 LESCLRHK-SEMVIYEAARAIVSLPNTN--S-RELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred HHHHHhch-hHHHHHHHHHHHhhccccC--H-hhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence 33444443 5677888888888776432 1 12222 78888888989999999999999999986554
No 438
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=30.44 E-value=2.5e+02 Score=30.68 Aligned_cols=150 Identities=14% Similarity=0.185 Sum_probs=86.1
Q ss_pred hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHH-hcCCCHHHHHHHHHHHHHHhccCCChh
Q 041252 190 EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDM-LNEGSVETKINCTRLIEKLMEEKDFRP 268 (450)
Q Consensus 190 ~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l-L~~~~~~~~~~aa~~L~~La~~~~~~~ 268 (450)
...+|.|.+.++.. +..+|+.++.++-..+..=+ ...+....+|.|-.+ +.+.+..++.++..++..++..-+
T Consensus 388 ~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD--- 461 (700)
T KOG2137|consen 388 EKILPLLYRSLEDS-DVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD--- 461 (700)
T ss_pred HHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH---
Confidence 34567777777765 67788888888877554211 222333445665554 345688999999999998872111
Q ss_pred hHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCC--hhHHHHHHHHHHHhcC
Q 041252 269 EIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLD--PDCLQLALCILDALSS 346 (450)
Q Consensus 269 ~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~--~~~~~~al~~L~~L~~ 346 (450)
...-...+.++.+..+.. ++..+...+++..++.....+...+....++|.++.+...+. .+--...+..+..+.+
T Consensus 462 -~~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i~~ml~ 539 (700)
T KOG2137|consen 462 -KAAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEIRLMLS 539 (700)
T ss_pred -HHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHHHHHHHHHHHHHHh
Confidence 111112233333333333 566666666766666654444344555678888887775443 2333344555555554
Q ss_pred C
Q 041252 347 L 347 (450)
Q Consensus 347 ~ 347 (450)
.
T Consensus 540 ~ 540 (700)
T KOG2137|consen 540 A 540 (700)
T ss_pred h
Confidence 4
No 439
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=30.37 E-value=2.9e+02 Score=26.57 Aligned_cols=32 Identities=28% Similarity=0.518 Sum_probs=27.7
Q ss_pred CCchHHHHHHhcCCCHHHHHHHHHHHHHHhcc
Q 041252 232 PAKVSLLVDMLNEGSVETKINCTRLIEKLMEE 263 (450)
Q Consensus 232 ~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~ 263 (450)
.=.+|.++.+++..+++.|..++.+|..+...
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~ 149 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEK 149 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 34589999999999999999999999999643
No 440
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=30.15 E-value=85 Score=27.23 Aligned_cols=38 Identities=32% Similarity=0.325 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh
Q 041252 332 DCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM 369 (450)
Q Consensus 332 ~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~ 369 (450)
.++-.|+..|..++.++.|...+..|..+|+.||+.|.
T Consensus 109 ~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~ 146 (149)
T PF12331_consen 109 TLRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALH 146 (149)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHH
Confidence 57788999999999999999999999999999999875
No 441
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=30.10 E-value=25 Score=22.50 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=15.7
Q ss_pred eeCcCCCCCCCCCeeCCCCCcccHHH
Q 041252 70 FVCPISLEPMQDPVTLCTGQTYERSN 95 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~~~~g~ty~r~~ 95 (450)
+.|++|... =.....|..||.+|
T Consensus 9 ~~C~~C~~~---~~~~~dG~~yC~~c 31 (36)
T PF11781_consen 9 EPCPVCGSR---WFYSDDGFYYCDRC 31 (36)
T ss_pred CcCCCCCCe---EeEccCCEEEhhhC
Confidence 448888886 22446788888665
No 442
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.71 E-value=1.3e+02 Score=31.91 Aligned_cols=65 Identities=11% Similarity=0.048 Sum_probs=35.6
Q ss_pred CCchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252 232 PAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC 304 (450)
Q Consensus 232 ~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls 304 (450)
...+...|++|.. .+..+|...+-+|.--+.....+. ...++.+|+ .+. ..-++..|..++.-+-
T Consensus 584 ~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~----a~diL~~L~---~D~-~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 584 RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV----ATDILEALM---YDT-NDFVRQSAMIAVGMIL 649 (926)
T ss_pred cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH----HHHHHHHHh---hCc-HHHHHHHHHHHHHHHH
Confidence 4556777777764 477787777777765554433221 223344443 343 3445556666655553
No 443
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.21 E-value=6.9e+02 Score=26.24 Aligned_cols=103 Identities=14% Similarity=0.028 Sum_probs=62.7
Q ss_pred hccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc-CCCchHH
Q 041252 159 KKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM-QPAKVSL 237 (450)
Q Consensus 159 ~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~-~~g~i~~ 237 (450)
++++...|..|+..|-+.+..-++-.+..... .+..++.=|-...+.+|+-+++..|.-+...-.++.... =-...-.
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 44555678889999999987634322222211 234444434333467899888888876543322322110 0123445
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhc
Q 041252 238 LVDMLNEGSVETKINCTRLIEKLME 262 (450)
Q Consensus 238 Lv~lL~~~~~~~~~~aa~~L~~La~ 262 (450)
+..+..+.+++.|.+|-.+...|+.
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHH
Confidence 5667778899999999988888864
No 444
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=29.16 E-value=20 Score=34.04 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=22.5
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC--CCCCCcchH
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL--WDDSVTPNK 123 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l--~~~~l~~n~ 123 (450)
-|.|+||.-+|..++ +.||.|...| ....+.||.
T Consensus 273 G~VCSVCLSVfC~~~---------------------PiC~~C~s~F~~t~~Pv~p~~ 308 (314)
T KOG2487|consen 273 GFVCSVCLSVFCRFV---------------------PICKTCKSKFSFTKYPVKPNR 308 (314)
T ss_pred eeehHHHHHHhhCCC---------------------CccchhhhhcccccCccchhh
Confidence 378888888887764 4677776665 444555653
No 445
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=29.16 E-value=30 Score=28.25 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=8.8
Q ss_pred CeeeCcCCCCCCCC
Q 041252 68 SVFVCPISLEPMQD 81 (450)
Q Consensus 68 ~~~~Cpi~~~~m~d 81 (450)
...+||-|+.-|.|
T Consensus 8 tKR~Cp~CG~kFYD 21 (108)
T PF09538_consen 8 TKRTCPSCGAKFYD 21 (108)
T ss_pred CcccCCCCcchhcc
Confidence 34678888765543
No 446
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.10 E-value=44 Score=32.30 Aligned_cols=11 Identities=18% Similarity=0.624 Sum_probs=5.4
Q ss_pred CCCCCcCCcCC
Q 041252 105 YTCPTTMQELW 115 (450)
Q Consensus 105 ~~cP~~~~~l~ 115 (450)
+.||.|...++
T Consensus 256 yvCs~Clsi~C 266 (279)
T TIGR00627 256 FVCSVCLSVLC 266 (279)
T ss_pred EECCCccCCcC
Confidence 45555544443
No 447
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=28.80 E-value=95 Score=28.76 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=25.3
Q ss_pred CCCcccHHHHHHHHhcCCCCCCCcCCcCCC-----CCCcchHHHHHHH
Q 041252 87 TGQTYERSNILKWFSLGRYTCPTTMQELWD-----DSVTPNKTLYHLI 129 (450)
Q Consensus 87 ~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~-----~~l~~n~~L~~~I 129 (450)
||++|.+..+........+.||.|+..+.+ .+..|...+.++.
T Consensus 119 C~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~Vv~fgE~lp~~~~~~a~ 166 (222)
T cd01413 119 CGSKYDLEEVKYAKKHEVPRCPKCGGIIRPDVVLFGEPLPQALLREAI 166 (222)
T ss_pred CCCCcchhHHHHhccCCCCcCCCCCCccCCCEEECCCCCCHHHHHHHH
Confidence 677777766633322235679999877654 2335555555543
No 448
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=28.24 E-value=27 Score=30.43 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=16.4
Q ss_pred CeeeCcCCCCCCCCCeeCCC
Q 041252 68 SVFVCPISLEPMQDPVTLCT 87 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~~ 87 (450)
++.+||||.+.-.+.|++-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 35689999999999997643
No 449
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=28.02 E-value=30 Score=24.46 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=8.9
Q ss_pred eeeCcCCCCCCC
Q 041252 69 VFVCPISLEPMQ 80 (450)
Q Consensus 69 ~~~Cpi~~~~m~ 80 (450)
.|.||.|++-+.
T Consensus 2 ~~~CP~CG~~ie 13 (54)
T TIGR01206 2 QFECPDCGAEIE 13 (54)
T ss_pred ccCCCCCCCEEe
Confidence 478999998543
No 450
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=27.69 E-value=2.3e+02 Score=31.40 Aligned_cols=108 Identities=20% Similarity=0.190 Sum_probs=72.4
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhcCChh--hHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHH
Q 041252 321 QLVELLPSLDPDCLQLALCILDALSSLPE--GKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAA 398 (450)
Q Consensus 321 ~Lv~lL~~~~~~~~~~al~~L~~L~~~~e--~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~ 398 (450)
.+...+..++.......+.++..++.-.. .+. . ..-+..-.......-....+....+|..++..+++......
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~-~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---E-KDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---c-ccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45555666677788888888888876421 111 1 11222222222322356677788899999988876655444
Q ss_pred HhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 399 VDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 399 ~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
-+.++...+..++-|+ .+++.+.|..+|+.....
T Consensus 521 ~d~~~~~~i~s~lfsp-~~~l~qaA~~llk~~~d~ 554 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSP-DDDLYQAAQDLLKQAFDV 554 (727)
T ss_pred cCcchhhHHHhheeCC-ChHHHHHHHHHHHHHhcC
Confidence 4678888899999888 788999999999987754
No 451
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=27.66 E-value=83 Score=22.69 Aligned_cols=14 Identities=21% Similarity=0.384 Sum_probs=10.8
Q ss_pred CCCCCCcCCcCCCC
Q 041252 104 RYTCPTTMQELWDD 117 (450)
Q Consensus 104 ~~~cP~~~~~l~~~ 117 (450)
|..||.|+.+++++
T Consensus 3 HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 3 HKHCPVCGKPIPPD 16 (59)
T ss_pred CCcCCcCCCcCCcc
Confidence 67899998877654
No 452
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=26.87 E-value=5.6e+02 Score=24.43 Aligned_cols=144 Identities=15% Similarity=0.203 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhcC-CCccchhHHHHHHHHhccChH--------HHHHHHhcCCHHHHHHhcCCCC----hhHHHHHHHHH
Q 041252 275 RLLIGLMRLVKNK-RHPNGILPGLSLLRSICLLNE--------VRSLVVSIGAVPQLVELLPSLD----PDCLQLALCIL 341 (450)
Q Consensus 275 g~l~~Lv~lL~~~-~~~~~~~~al~aL~~Ls~~~~--------~~~~iv~~G~v~~Lv~lL~~~~----~~~~~~al~~L 341 (450)
|..+++..++-.+ .++.....++..|..|...+. +|-.+.=.+.+|.++.-+.+++ ......++..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 3445555555443 456677888888888874332 3433333456777777776665 24455666777
Q ss_pred HHhcCChhhHHHHhccCCChHHHHHHHhcCC-hHHHHHHHHHHHHhcccC-chhHHHHHHhcChHHHHHHHHHcCCCHHH
Q 041252 342 DALSSLPEGKLALKDCANTIPNTVRLLMRVS-EDCTQYALSILWSICKIA-PEECSSAAVDAGLAAKLFLVIQSGCNPVL 419 (450)
Q Consensus 342 ~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s-~~~~e~A~~~L~~L~~~~-~~~~~~~~~~~G~i~~L~~ll~s~~~~~~ 419 (450)
..+|... . ...+..+.....++. ....+....+...++... |+ .+...+.-|+.++.++ .+-.
T Consensus 140 a~~a~~~-------~-~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~------~~~~~l~~Ll~lL~n~-~~w~ 204 (262)
T PF14225_consen 140 AQVAEAQ-------G-LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD------HEFQILTFLLGLLENG-PPWL 204 (262)
T ss_pred HHHHHhC-------C-CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHhCC-cHHH
Confidence 7777321 1 122333333332222 122222222222233221 21 1234556677777766 5677
Q ss_pred HHHHHHHHHHHHhh
Q 041252 420 KQRSAELLKLCSLN 433 (450)
Q Consensus 420 k~~A~~lL~~ls~~ 433 (450)
|.....+|+.+=.+
T Consensus 205 ~~~~L~iL~~ll~~ 218 (262)
T PF14225_consen 205 RRKTLQILKVLLPH 218 (262)
T ss_pred HHHHHHHHHHHhcc
Confidence 77777777765444
No 453
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=26.83 E-value=5.3e+02 Score=26.48 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=66.0
Q ss_pred ChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcC-----ChHHHHHHHHHHHHhcccCchhHHHHHHhcCh
Q 041252 330 DPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRV-----SEDCTQYALSILWSICKIAPEECSSAAVDAGL 403 (450)
Q Consensus 330 ~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~-----s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~ 403 (450)
+..+...+++.|.|+.-+ +..|..+.+ ......+.+.+... ....+-.=++.|.-+....+....+.+.+.++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~-~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G 188 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLE-NPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG 188 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHh-hhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 457889999999999855 677777776 44455554444321 12334444556666665555445567778888
Q ss_pred HHHHHHHHHcC----C----C---HHHHHHHHHHHHHHHhh
Q 041252 404 AAKLFLVIQSG----C----N---PVLKQRSAELLKLCSLN 433 (450)
Q Consensus 404 i~~L~~ll~s~----~----~---~~~k~~A~~lL~~ls~~ 433 (450)
.+.+..++.+. + . +.--..|.++||.+-..
T Consensus 189 l~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNv 229 (532)
T KOG4464|consen 189 LELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNV 229 (532)
T ss_pred cHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhhe
Confidence 89988888543 1 1 24457788888876544
No 454
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=26.50 E-value=1.4e+02 Score=24.54 Aligned_cols=39 Identities=26% Similarity=0.185 Sum_probs=32.9
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhc
Q 041252 318 AVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKD 356 (450)
Q Consensus 318 ~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~ 356 (450)
+|+.|+.-|.+.++++...|+.+|...|..++....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 477888899999999999999999999988766666654
No 455
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=26.44 E-value=7.2e+02 Score=25.56 Aligned_cols=137 Identities=14% Similarity=0.121 Sum_probs=78.4
Q ss_pred HHHHHHHhcCCCchhhhhccCCCchHHHHHHhc----------CCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHH
Q 041252 211 EAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLN----------EGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGL 280 (450)
Q Consensus 211 ~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~----------~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~L 280 (450)
..+.+++-|+.+...-..+....-+..|..+-. ..+.++...+..+|.|+.-.+...+....+......+
T Consensus 65 ~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~l 144 (532)
T KOG4464|consen 65 VCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKL 144 (532)
T ss_pred hHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHH
Confidence 344555555655544444443333444444321 1235778888999999975554445555555555555
Q ss_pred HHHHhc----CCCccchhHHHHHHHHhc-cChHHHHHHH-hcCCHHHHHHhcCCC---------Ch------hHHHHHHH
Q 041252 281 MRLVKN----KRHPNGILPGLSLLRSIC-LLNEVRSLVV-SIGAVPQLVELLPSL---------DP------DCLQLALC 339 (450)
Q Consensus 281 v~lL~~----~~~~~~~~~al~aL~~Ls-~~~~~~~~iv-~~G~v~~Lv~lL~~~---------~~------~~~~~al~ 339 (450)
.+.+.. +......-.-++.|.-|. .....|.++. +.++++.+-..|.+. ++ ...-.+++
T Consensus 145 l~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK 224 (532)
T KOG4464|consen 145 LQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALK 224 (532)
T ss_pred HHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHH
Confidence 555432 111234456677777776 4456666555 689999999998542 11 33455666
Q ss_pred HHHHhcCC
Q 041252 340 ILDALSSL 347 (450)
Q Consensus 340 ~L~~L~~~ 347 (450)
++.|+...
T Consensus 225 ~~FNvt~~ 232 (532)
T KOG4464|consen 225 VFFNVTCD 232 (532)
T ss_pred HHhheeec
Confidence 77777643
No 456
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=26.43 E-value=18 Score=28.99 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=15.1
Q ss_pred eeCcCCCCCC--CCCeeC--CCCCcccHHHHHHH-Hh-cCCCCCCCcCCcC
Q 041252 70 FVCPISLEPM--QDPVTL--CTGQTYERSNILKW-FS-LGRYTCPTTMQEL 114 (450)
Q Consensus 70 ~~Cpi~~~~m--~dPv~~--~~g~ty~r~~I~~~-~~-~~~~~cP~~~~~l 114 (450)
=.||+|++.+ .|+... +.||+|.|=++.-- +. -+..+|+.|+...
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~ 65 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVWPRCALTFLPIQTPGVRVCPVCGRRA 65 (99)
T ss_dssp --------------SSEEE-TTS-EEEB-SSS-SBS-SS-EEE-TTT--EE
T ss_pred ccccccccccccCCcCEeECCCCCEEeeeeeeeeeeccCCeeEcCCCCCEE
Confidence 3599999865 566544 47999977654432 11 1235699998764
No 457
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=26.28 E-value=1e+02 Score=27.33 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=29.3
Q ss_pred CCCCcccHHHHHHHHhcC-CCCCCCcCCcCCC-----CCCcchHHHHHHHHHHHH
Q 041252 86 CTGQTYERSNILKWFSLG-RYTCPTTMQELWD-----DSVTPNKTLYHLIHTWFS 134 (450)
Q Consensus 86 ~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~-----~~l~~n~~L~~~I~~w~~ 134 (450)
.||+.|....+....... ...||.|+..+.+ .+..| ..+.++++ |..
T Consensus 110 ~C~~~~~~~~~~~~~~~~~~~~C~~C~~~lrp~vv~fgE~~~-~~~~~~~~-~~~ 162 (178)
T PF02146_consen 110 KCGKEYDREDIVDSIDEEEPPRCPKCGGLLRPDVVLFGESLP-EEIEEAIE-DAE 162 (178)
T ss_dssp TTSBEEEGHHHHHHHHTTSSCBCTTTSCBEEEEE--BTSB-S-HHHHHHHH-HHH
T ss_pred CCCccccchhhcccccccccccccccCccCCCCeeecCCCCH-HHHHHHHH-HHH
Confidence 477788887776665543 4679999887644 23344 55666555 443
No 458
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.20 E-value=7.2e+02 Score=27.94 Aligned_cols=175 Identities=19% Similarity=0.198 Sum_probs=80.7
Q ss_pred hHHHHhhhCCCCChhhHHHHHHHHHh-cCCCchhhhhccCCCchHH-----HH---HHhcCCCHHHHHHHHH-HHHHHhc
Q 041252 193 VALISSLLGPFTSHAVGSEAVGVLVN-LTLDSESKTNLMQPAKVSL-----LV---DMLNEGSVETKINCTR-LIEKLME 262 (450)
Q Consensus 193 i~~Lv~lL~~~~~~~v~~~Al~~L~~-Ls~~~~~k~~i~~~g~i~~-----Lv---~lL~~~~~~~~~~aa~-~L~~La~ 262 (450)
+|.+++.|... +.-+...|+.++-. |...+.+...+..++-+.+ +. +.++.+....-+.... +++.+.-
T Consensus 500 ~p~li~~L~a~-s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i 578 (960)
T KOG1992|consen 500 LPRLIRFLEAE-SRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISI 578 (960)
T ss_pred HHHHHHhccCc-chHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHh
Confidence 66777777764 55677777777766 4444445566666554443 11 1222221121222222 3344432
Q ss_pred cCCChhhHhhhhhHHHHHHHHHh----cCCCccchhH---HHHHH-HHhccChHHHHHHHhcCCHHHHHHhcCCCChhHH
Q 041252 263 EKDFRPEIVSSHRLLIGLMRLVK----NKRHPNGILP---GLSLL-RSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCL 334 (450)
Q Consensus 263 ~~~~~~~~~~~~g~l~~Lv~lL~----~~~~~~~~~~---al~aL-~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~ 334 (450)
.++..... ..-++..|.+++. ...+|..-.. +.+++ ...|..+..-....+...+|.+-.+|+..=.+..
T Consensus 579 ~~~~i~p~--~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~Efi 656 (960)
T KOG1992|consen 579 LQSAIIPH--APELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFI 656 (960)
T ss_pred CHHhhhhh--hhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111 1223444444443 2334444332 22222 2333333222223334456666666654334555
Q ss_pred HHHHHHHHHhcCC-----hhhH---------HHHhccCCChHHHHHHHhc
Q 041252 335 QLALCILDALSSL-----PEGK---------LALKDCANTIPNTVRLLMR 370 (450)
Q Consensus 335 ~~al~~L~~L~~~-----~e~r---------~~i~~~~g~i~~Lv~lL~~ 370 (450)
-.++-+|+.|... ++.- ..+.+..|-||++|+++..
T Consensus 657 PYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~a 706 (960)
T KOG1992|consen 657 PYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQA 706 (960)
T ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHH
Confidence 5555555555432 2222 2233456889999999864
No 459
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=25.54 E-value=3.6e+02 Score=29.88 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 041252 332 DCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKI 389 (450)
Q Consensus 332 ~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 389 (450)
.+.+....+|..++.. ++.-..+..+.+++..++.++.+......+.|..+|..+...
T Consensus 496 ~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~ 554 (727)
T PF12726_consen 496 QITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV 554 (727)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcC
Confidence 4667778888999866 666666666589999999999999999999999999998753
No 460
>PF12773 DZR: Double zinc ribbon
Probab=25.36 E-value=63 Score=21.89 Aligned_cols=12 Identities=25% Similarity=0.307 Sum_probs=7.2
Q ss_pred CCCCCCcCCcCC
Q 041252 104 RYTCPTTMQELW 115 (450)
Q Consensus 104 ~~~cP~~~~~l~ 115 (450)
..+||.|+..+.
T Consensus 29 ~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 29 KKICPNCGAENP 40 (50)
T ss_pred CCCCcCCcCCCc
Confidence 345777776543
No 461
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=25.36 E-value=58 Score=20.11 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=18.8
Q ss_pred CcCCCCCCCC--CeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252 72 CPISLEPMQD--PVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 72 Cpi~~~~m~d--Pv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 114 (450)
|+.|.+.+.+ .++..-|..|-.. -+.|..|+.+|
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~---------Cf~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPE---------CFKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEeCCcccccc---------CCCCcccCCcC
Confidence 6777776665 3343445555222 25577776655
No 462
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.23 E-value=50 Score=34.23 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=30.1
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccHHHHHHHHhc
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYERSNILKWFSL 102 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r~~I~~~~~~ 102 (450)
.....|.||.+-..+ .+.+.|||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 345899999987775 556789999999999999874
No 463
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=24.93 E-value=5e+02 Score=23.16 Aligned_cols=142 Identities=18% Similarity=0.143 Sum_probs=82.3
Q ss_pred HHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCC-CchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhh
Q 041252 194 ALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQP-AKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVS 272 (450)
Q Consensus 194 ~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~-g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~ 272 (450)
+.++++..+. +..++..|+.++.... +.-++.+ ..+|.|+.+..+.++.++..|...+..+.+..+.....-.
T Consensus 11 ~~Il~~~~~~-~~~vr~~Al~~l~~il-----~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 11 KNILELCLSS-DDSVRLAALQVLELIL-----RQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHH-----hcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455554443 5678888888876532 3445554 4799999999999999999999999999655443221111
Q ss_pred hhhHHHHHHHHHhc---CCCccc---hhHHHHHHHHhcc-ChHHHHHHHhcCCHHHHHHhcCCC--------ChhHHHHH
Q 041252 273 SHRLLIGLMRLVKN---KRHPNG---ILPGLSLLRSICL-LNEVRSLVVSIGAVPQLVELLPSL--------DPDCLQLA 337 (450)
Q Consensus 273 ~~g~l~~Lv~lL~~---~~~~~~---~~~al~aL~~Ls~-~~~~~~~iv~~G~v~~Lv~lL~~~--------~~~~~~~a 337 (450)
.. ++..-...-.. +..... ....+..|+.+.. +..+|..++. .|+..+... ...-....
T Consensus 85 ~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~-----~l~k~f~~~~~~~~~~~~~~~l~~~ 158 (187)
T PF12830_consen 85 SE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK-----SLLKQFDFDLTKLSSESSPSDLDFL 158 (187)
T ss_pred HH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH-----HHHHHHHhhccccccccchhHHHHH
Confidence 12 23333333221 111111 4566677777764 4556766653 455555322 23344555
Q ss_pred HHHHHHhcCC
Q 041252 338 LCILDALSSL 347 (450)
Q Consensus 338 l~~L~~L~~~ 347 (450)
+.+..||+.-
T Consensus 159 ~Fla~nLA~l 168 (187)
T PF12830_consen 159 LFLAENLATL 168 (187)
T ss_pred HHHHHHHhcC
Confidence 5566666653
No 464
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=24.67 E-value=56 Score=32.10 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=36.2
Q ss_pred CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc-CCCCCCCcCCc
Q 041252 67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL-GRYTCPTTMQE 113 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~-~~~~cP~~~~~ 113 (450)
.++-.|-||-+-..--.++||||..|.-|--+.-.. ....||.|+..
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 345789999998888888999999999996553221 24679999865
No 465
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=24.53 E-value=8.1e+02 Score=25.44 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhc
Q 041252 164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLN 243 (450)
Q Consensus 164 ~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~ 243 (450)
..|.+|++.|......-+- ..+. ......-.++......+++..+...|..+......+..+...-....+ -.
T Consensus 5 ~~R~~a~~~l~~~i~~~~~--~~i~--~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I---~~ 77 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPL--SSIE--EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDI---SD 77 (464)
T ss_pred HHHHHHHHHHHHHHHhCCc--hHHH--HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH---hc
Confidence 4566677776665543211 1110 011222355555545678888888888776554332111111111111 12
Q ss_pred CCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHh
Q 041252 244 EGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK 285 (450)
Q Consensus 244 ~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~ 285 (450)
+..++.-..-..+|..|+.+...... -..+..+.|...+.
T Consensus 78 ~~~~~d~~~~l~aL~~LT~~Grdi~~--~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 78 PSNDDDFDLRLEALIALTDNGRDIDF--FEYEIGPFLLSWLE 117 (464)
T ss_pred CCCchhHHHHHHHHHHHHcCCcCchh--cccchHHHHHHHHH
Confidence 23333333445567777655433321 23344455655553
No 466
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=24.29 E-value=3.3e+02 Score=22.48 Aligned_cols=106 Identities=21% Similarity=0.206 Sum_probs=60.7
Q ss_pred CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC-C--------ChhhH----hh--hhhHHHHHHHHHhcCCC---ccch
Q 041252 232 PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK-D--------FRPEI----VS--SHRLLIGLMRLVKNKRH---PNGI 293 (450)
Q Consensus 232 ~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~-~--------~~~~~----~~--~~g~l~~Lv~lL~~~~~---~~~~ 293 (450)
+..++.++..+.+ ++........+|..+.++- + .+... +. ...++..+.+++....+ ....
T Consensus 25 p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~ 103 (148)
T PF08389_consen 25 PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELV 103 (148)
T ss_dssp TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHH
T ss_pred chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 3456777777665 4555566666666664211 0 01111 11 12344555555554322 4567
Q ss_pred hHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHH
Q 041252 294 LPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCIL 341 (450)
Q Consensus 294 ~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L 341 (450)
..++.++......-+ -..+.+...++.+..+|. +++.++.|+.+|
T Consensus 104 ~~~L~~l~s~i~~~~-~~~i~~~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 104 KAALKCLKSWISWIP-IELIINSNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-HHHhccHHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 788888888776443 345666789999999995 445677777654
No 467
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=24.11 E-value=1.3e+03 Score=27.89 Aligned_cols=259 Identities=14% Similarity=0.118 Sum_probs=120.8
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchh----h
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES----K 226 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~----k 226 (450)
...+++.+.-.+...|...+..|-.+..++. +.. ++..|..++... .+..-..+.+|.+|..+++. |
T Consensus 194 ~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds~-h~~------v~~~L~~ll~~~--~~L~~~iLd~Ls~L~Ls~~~l~~vr 264 (1426)
T PF14631_consen 194 TDKLFEVLSIAPVELQKEIISSLPEILDDSQ-HDE------VVEELLELLQEN--PELTVPILDALSNLNLSPELLEEVR 264 (1426)
T ss_dssp HHHHHHHHHHS-TTTHHHHHHTHHHHS-GGG-HHH------HHHHHHHHHHH---STTHHHHHHHHHHS---HHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcchh-HHH------HHHHHHHHHhcC--CchhhhHHHHHhcCCCCHHHHHHHH
Confidence 4455555555555666667777766664432 211 246667777543 35667778899998887654 3
Q ss_pred hhcc------CCCchHHHHHHhcCC-C-HHHHHHHHHHHHHHh------------ccCCChh---------hHhhhhhHH
Q 041252 227 TNLM------QPAKVSLLVDMLNEG-S-VETKINCTRLIEKLM------------EEKDFRP---------EIVSSHRLL 277 (450)
Q Consensus 227 ~~i~------~~g~i~~Lv~lL~~~-~-~~~~~~aa~~L~~La------------~~~~~~~---------~~~~~~g~l 277 (450)
..++ ....+|.++++|-.. + .+..+--..+-.+|= +...... ......+..
T Consensus 265 ~~vl~~L~s~~~e~LP~lirFLL~s~t~~da~evI~~LR~~L~~~~~v~~~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~ 344 (1426)
T PF14631_consen 265 EKVLEKLSSVDLEDLPVLIRFLLQSITPSDAVEVISELRENLDFEQCVLPSRIQASQRKLKNKGNASSSGNQENSSQDCE 344 (1426)
T ss_dssp HHHHHSTTSS-TTHHHHHHHHHHHS-SSTTHHHHHHHHHHHHH-------------------------------HHHHHH
T ss_pred HHHHHHHhcCChhhhHHHHHHHHHhCCcccHHHHHHHHHHHccccccccchhhcccccccccCcccccccccccccccHH
Confidence 3332 244589999987532 2 122221111111220 0000000 000111233
Q ss_pred HHHHHHHhcC--CCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCChhhH---
Q 041252 278 IGLMRLVKNK--RHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELL-PSLDPDCLQLALCILDALSSLPEGK--- 351 (450)
Q Consensus 278 ~~Lv~lL~~~--~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~e~r--- 351 (450)
..++..|+.+ .+..+..+.+.++.++.... +.-+++.++-++ .+.+..-+..+-.+|.+-.....-.
T Consensus 345 ~lil~~lks~lr~~k~l~eawiK~I~~~~~~~-------~hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g~it~~l 417 (1426)
T PF14631_consen 345 KLILDVLKSGLRFSKDLSEAWIKAIESLEDAS-------DHKVIDLWLLLILYSINEDNRKSIEKILKKKIKSGHITEQL 417 (1426)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHGGGST-------T--THHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT-S-HHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhcCCCcc-------ccchHHHHHHHHHHcCCccchHHHHHHHHHHHHhCcccHHH
Confidence 4455555442 12333444555555553211 122455544443 3333334555666666655443222
Q ss_pred --------HHHhccCCChHHHHHHH----hcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHH
Q 041252 352 --------LALKDCANTIPNTVRLL----MRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVL 419 (450)
Q Consensus 352 --------~~i~~~~g~i~~Lv~lL----~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~ 419 (450)
..+.+ .-++.++.+. .+..+.+.+.+......+-.....-++++ ++..|+..+.+|.+..
T Consensus 418 l~~~f~~~~~vL~--~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqe-----Vv~~Lvthi~sg~~~e- 489 (1426)
T PF14631_consen 418 LDQTFKGHSEVLK--DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQE-----VVGALVTHIGSGNSQE- 489 (1426)
T ss_dssp HHHHHHHHHHHHT--TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHH-----HHHHHHHHHHH--HHH-
T ss_pred HHHHHhhhHHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHH-----HHHHHHHHHcCCcHHH-
Confidence 22222 3445554443 33456777777766666555543223333 6777888888884444
Q ss_pred HHHHHHHHHHHHhh
Q 041252 420 KQRSAELLKLCSLN 433 (450)
Q Consensus 420 k~~A~~lL~~ls~~ 433 (450)
...|..+|..+...
T Consensus 490 v~~aL~vL~~L~~~ 503 (1426)
T PF14631_consen 490 VDAALDVLCELAEK 503 (1426)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 46777777766654
No 468
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.01 E-value=8.1e+02 Score=25.29 Aligned_cols=137 Identities=18% Similarity=0.193 Sum_probs=75.4
Q ss_pred HHHHHHHHhcccccccCCcchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHc-HHHHHHHHhhCChHHHHhhhCC---
Q 041252 127 HLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAH-ASARKTMVDEGGVALISSLLGP--- 202 (450)
Q Consensus 127 ~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~--- 202 (450)
++|+-||++-+... +...-++.-+-..+++.++..-..|+..|....++. ...-..+.+...+.-|+++++.
T Consensus 27 ~ai~~fceqinkdp----~gp~lAv~LlaHKiqSPqe~EAl~altvLe~cmkncGekfH~evgkfrFLNELIkvvsPKYl 102 (594)
T KOG1086|consen 27 KAIDGFCEQINKDP----EGPLLAVRLLAHKIQSPQEWEALQALTVLEYCMKNCGEKFHEEVGKFRFLNELIKVVSPKYL 102 (594)
T ss_pred HHHHHHHHHHhcCC----CCchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCchhc
Confidence 56888888743211 111112223344556666556666666666555432 1222333333344555555543
Q ss_pred --CCChhhHHHHHHHHHh--cCCCch-----------------------------------hhhhccC-CCchHHHHHHh
Q 041252 203 --FTSHAVGSEAVGVLVN--LTLDSE-----------------------------------SKTNLMQ-PAKVSLLVDML 242 (450)
Q Consensus 203 --~~~~~v~~~Al~~L~~--Ls~~~~-----------------------------------~k~~i~~-~g~i~~Lv~lL 242 (450)
.++..+..+.+.+|.. ++.-++ -|..+++ +..-..|.++|
T Consensus 103 G~~tSekvKtkiIelLfsWtv~lpe~~KikdaYqmLKkqgIik~DP~lp~d~~~~p~ppP~pkssvFddEEksklL~rLL 182 (594)
T KOG1086|consen 103 GSRTSEKVKTKIIELLFSWTVSLPEEPKIKDAYQMLKKQGIIKSDPKLPVDETPVPAPPPRPKSSVFDDEEKSKLLARLL 182 (594)
T ss_pred chhhhHHHHHHHHHHHhhheecCcccchHHHHHHHHHhcCcccCCCCCCCCCccCCCCCCCCCccccCcHHHHHHHHHHH
Confidence 3356677777777664 332221 1222222 23355678889
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCh
Q 041252 243 NEGSVETKINCTRLIEKLMEEKDFR 267 (450)
Q Consensus 243 ~~~~~~~~~~aa~~L~~La~~~~~~ 267 (450)
++..++-.+.|-.+|.+|...++.+
T Consensus 183 kSn~PeDLqaANkLIK~lVkeee~k 207 (594)
T KOG1086|consen 183 KSNHPEDLQAANKLIKTLVKEEEHK 207 (594)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998655444
No 469
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=23.92 E-value=43 Score=28.05 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=9.4
Q ss_pred CeeeCcCCCCCCCC
Q 041252 68 SVFVCPISLEPMQD 81 (450)
Q Consensus 68 ~~~~Cpi~~~~m~d 81 (450)
...+||-|+.-|.|
T Consensus 8 tKr~Cp~cg~kFYD 21 (129)
T TIGR02300 8 TKRICPNTGSKFYD 21 (129)
T ss_pred ccccCCCcCccccc
Confidence 34678888866643
No 470
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.75 E-value=38 Score=26.43 Aligned_cols=13 Identities=15% Similarity=0.580 Sum_probs=11.5
Q ss_pred cccHHHHHHHHhc
Q 041252 90 TYERSNILKWFSL 102 (450)
Q Consensus 90 ty~r~~I~~~~~~ 102 (450)
-|||.|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4899999999975
No 471
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=23.37 E-value=61 Score=25.53 Aligned_cols=38 Identities=18% Similarity=0.413 Sum_probs=27.7
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
.-.|-||..-...| |+.||..| .+. ...|.+|+..+.+
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~C---AYk--kGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTC---AYK--KGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCccChhh---hcc--cCcccccCCeecc
Confidence 44799999854444 89999999 222 3579999987643
No 472
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=23.32 E-value=1.8e+02 Score=23.81 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=27.6
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHhccC
Q 041252 234 KVSLLVDMLNEGSVETKINCTRLIEKLMEEK 264 (450)
Q Consensus 234 ~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~ 264 (450)
+|+.|+.-|...++++...|..+|.+.+.++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 5889999999889999999999999998766
No 473
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=23.22 E-value=4e+02 Score=27.91 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=63.2
Q ss_pred CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC--CC---hhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc--
Q 041252 232 PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK--DF---RPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-- 304 (450)
Q Consensus 232 ~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~--~~---~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-- 304 (450)
++.+..+++.+.... -+.+|..|...+ +. ..+...+.++++.|+.+|....++..+.+|+..|..|.
T Consensus 20 ~~~v~~llkHI~~~~------ImDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~i 93 (475)
T PF04499_consen 20 PNFVDNLLKHIDTPA------IMDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRI 93 (475)
T ss_pred ccHHHHHHHhcCCcH------HHHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 566777777665331 122333332221 22 23334678899999999986656667777877776663
Q ss_pred -cC-----------hHHHHHHHhcCCHHHHHHhcCC-CChhHHHHHHHHHHHhc
Q 041252 305 -LL-----------NEVRSLVVSIGAVPQLVELLPS-LDPDCLQLALCILDALS 345 (450)
Q Consensus 305 -~~-----------~~~~~~iv~~G~v~~Lv~lL~~-~~~~~~~~al~~L~~L~ 345 (450)
.+ .+--..+++...|..|+..+-. ........++.++-.|-
T Consensus 94 s~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 94 SRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred hhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 21 2223456666777777777642 33556666666666554
No 474
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=23.18 E-value=9.8e+02 Score=25.93 Aligned_cols=100 Identities=13% Similarity=0.023 Sum_probs=68.5
Q ss_pred hhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccC--CCch
Q 041252 158 LKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQ--PAKV 235 (450)
Q Consensus 158 L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~--~g~i 235 (450)
..+.....|..+...|+.....=|+ .+.+-.++...-.+|... ...++.....+|..|+.++.+...+.+ ...-
T Consensus 284 y~Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~LSDn-~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk 359 (740)
T COG5537 284 YIDVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSLSDN-HEGVRLLVSKILLFLCSRIPHTDAIRRFVERFK 359 (740)
T ss_pred ccchhHHHHHHHHHHHHHHHhcchH---HHHhhhcccccccccccc-hHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 3445556788888888877754342 333334566666777654 567899999999999988777665443 4556
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHh
Q 041252 236 SLLVDMLNEGSVETKINCTRLIEKLM 261 (450)
Q Consensus 236 ~~Lv~lL~~~~~~~~~~aa~~L~~La 261 (450)
..+++++..+..-+|..+...+..|.
T Consensus 360 ~rILE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 360 DRILEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHH
Confidence 67778877664448888888877774
No 475
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.83 E-value=19 Score=23.84 Aligned_cols=9 Identities=22% Similarity=0.493 Sum_probs=7.2
Q ss_pred CCCCCCcCC
Q 041252 104 RYTCPTTMQ 112 (450)
Q Consensus 104 ~~~cP~~~~ 112 (450)
...||.|+.
T Consensus 26 ~~~CP~Cg~ 34 (42)
T PF09723_consen 26 PVPCPECGS 34 (42)
T ss_pred CCcCCCCCC
Confidence 457999987
No 476
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=22.56 E-value=1.4e+02 Score=28.93 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=42.7
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHc--------------HHHHHHHHhhCChHHHHhhhCC
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAH--------------ASARKTMVDEGGVALISSLLGP 202 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~--------------~~~r~~i~~~G~i~~Lv~lL~~ 202 (450)
.-+..++..|.+.+...|..|+.+|.-++.+. ..|-..+.+.|++++|..+|..
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45778899998888888999999987665321 2577788999999999999864
No 477
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=22.36 E-value=1.8e+02 Score=21.23 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=27.8
Q ss_pred cChHHHHHHHHHcCC-CHHHHHHHHHHHHH-HHhhcC
Q 041252 401 AGLAAKLFLVIQSGC-NPVLKQRSAELLKL-CSLNYT 435 (450)
Q Consensus 401 ~G~i~~L~~ll~s~~-~~~~k~~A~~lL~~-ls~~~~ 435 (450)
.|.+..|+.++.+.. ++.+|..|+.+||+ +..+|.
T Consensus 13 p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~ 49 (77)
T PF03810_consen 13 PGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWS 49 (77)
T ss_dssp TCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCc
Confidence 488899999995543 68999999999998 555565
No 478
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=22.32 E-value=6.3e+02 Score=23.42 Aligned_cols=44 Identities=9% Similarity=0.056 Sum_probs=29.8
Q ss_pred HHHHhcCCCchhhhhccCCCchHHHHHHh-cCCCHHHHHHHHHHHHHHh
Q 041252 214 GVLVNLTLDSESKTNLMQPAKVSLLVDML-NEGSVETKINCTRLIEKLM 261 (450)
Q Consensus 214 ~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~aa~~L~~La 261 (450)
..++.++...++ -....++.+..+| ++.+...+..+..+|..|+
T Consensus 106 ~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 106 ASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 345554443333 2234578888888 6778888888888888887
No 479
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=22.28 E-value=9.1e+02 Score=26.54 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=80.0
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
..|.+|+..|.+.+..+...+-..+......+.+. . .+..|+..--+..+ ..|+.+|..+- .+..|.
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~--~-----l~~~l~~y~~~t~s----~~~~~il~~~~-~P~~K~- 70 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP--W-----LVNGLVDYYLSTNS----QRALEILVGVQ-EPHDKH- 70 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH--H-----HHHHHHHHHhhcCc----HHHHHHHHhcC-CccHHH-
Confidence 45778999998877766665555555444322111 1 13444543222212 23455555332 111121
Q ss_pred ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252 229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC 304 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls 304 (450)
.+..|=..+. .+..|..+..+|..+........-.+.+..++..|+++|..+.+..+...|+.+|..|-
T Consensus 71 -----~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 71 -----LFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred -----HHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 2333334443 45788888889988877665555556788899999999987666666667777776664
No 480
>PHA00626 hypothetical protein
Probab=21.91 E-value=76 Score=22.52 Aligned_cols=7 Identities=29% Similarity=0.567 Sum_probs=4.7
Q ss_pred eCcCCCC
Q 041252 71 VCPISLE 77 (450)
Q Consensus 71 ~Cpi~~~ 77 (450)
.||-|+.
T Consensus 2 ~CP~CGS 8 (59)
T PHA00626 2 SCPKCGS 8 (59)
T ss_pred CCCCCCC
Confidence 4777775
No 481
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.67 E-value=1.6e+02 Score=27.23 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=39.1
Q ss_pred HHHHhhhccCCCCeeeCcCCCCCCC--CCeeCCCCCcccHHHHHHHHhc---C----CCCCCCcCCcC
Q 041252 56 KMIAELDLAEIPSVFVCPISLEPMQ--DPVTLCTGQTYERSNILKWFSL---G----RYTCPTTMQEL 114 (450)
Q Consensus 56 ~~~~~~~~~~~p~~~~Cpi~~~~m~--dPv~~~~g~ty~r~~I~~~~~~---~----~~~cP~~~~~l 114 (450)
.+++=+++.+. ..-|.+|.-.+. |-+-+-|=|.|-=.|+.+|-.. + .+.||.|.+++
T Consensus 39 SYLqWL~DsDY--~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 39 SYLQWLQDSDY--NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred HHHHHHhhcCC--CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 44454554433 234777776654 6777889999999999999763 1 35699997763
No 482
>PRK07758 hypothetical protein; Provisional
Probab=21.63 E-value=57 Score=25.89 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=17.1
Q ss_pred CCCcccHHHHHHHHhcCCCCCCCcCCcCCC-CCCcc
Q 041252 87 TGQTYERSNILKWFSLGRYTCPTTMQELWD-DSVTP 121 (450)
Q Consensus 87 ~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~-~~l~~ 121 (450)
-||+|-++. .-++||.|.....+ .++.|
T Consensus 12 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 40 (95)
T PRK07758 12 KGHEYYKSS-------DCPTCPTCEKERKPKEGFLS 40 (95)
T ss_pred cccceeccC-------CCCCCcccccccCCCCCCCc
Confidence 488886554 45678888765433 34444
No 483
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=21.62 E-value=1.4e+02 Score=21.44 Aligned_cols=24 Identities=8% Similarity=0.002 Sum_probs=16.5
Q ss_pred CCCCCCcCCcCCCCCCcchHHHHH
Q 041252 104 RYTCPTTMQELWDDSVTPNKTLYH 127 (450)
Q Consensus 104 ~~~cP~~~~~l~~~~l~~n~~L~~ 127 (450)
|..||+|+...++++.......++
T Consensus 8 H~HC~VCg~aIp~de~~CSe~C~e 31 (64)
T COG4068 8 HRHCVVCGKAIPPDEQVCSEECGE 31 (64)
T ss_pred CccccccCCcCCCccchHHHHHHH
Confidence 667999998887766555444443
No 484
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=21.30 E-value=25 Score=19.87 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=9.3
Q ss_pred eeCcCCCCCCCCCe
Q 041252 70 FVCPISLEPMQDPV 83 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv 83 (450)
|.|.||...|.++.
T Consensus 1 ~~C~~C~~~f~s~~ 14 (25)
T PF12874_consen 1 FYCDICNKSFSSEN 14 (25)
T ss_dssp EEETTTTEEESSHH
T ss_pred CCCCCCCCCcCCHH
Confidence 56777777666653
No 485
>PRK04966 hypothetical protein; Provisional
Probab=20.90 E-value=1.9e+02 Score=21.73 Aligned_cols=42 Identities=12% Similarity=0.168 Sum_probs=28.6
Q ss_pred cchHHHHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhcc
Q 041252 120 TPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKV 161 (450)
Q Consensus 120 ~~n~~L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~ 161 (450)
.+..+|+++|++|..+.|.+...........+..+...|+++
T Consensus 8 L~~eTL~nLIeefv~ReGTdyG~~E~sl~~kv~qv~~qL~~G 49 (72)
T PRK04966 8 LAPETLENLIESFVLREGTDYGEHERSLEQKVADVKRQLQSG 49 (72)
T ss_pred CCHHHHHHHHHHHHhccCccCCcccccHHHHHHHHHHHHHcC
Confidence 455789999999999877665433333345566677777665
No 486
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=20.53 E-value=1e+02 Score=25.02 Aligned_cols=25 Identities=8% Similarity=0.258 Sum_probs=19.2
Q ss_pred CCcccHHHHHHHHhc--------CCCCCCCcCC
Q 041252 88 GQTYERSNILKWFSL--------GRYTCPTTMQ 112 (450)
Q Consensus 88 g~ty~r~~I~~~~~~--------~~~~cP~~~~ 112 (450)
.-.||..|+..++.+ .+..||.|+.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 567999998887753 3467999975
No 487
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.20 E-value=33 Score=27.48 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=7.5
Q ss_pred CCCCCCCcCCcCCC
Q 041252 103 GRYTCPTTMQELWD 116 (450)
Q Consensus 103 ~~~~cP~~~~~l~~ 116 (450)
|...||.|+.++..
T Consensus 48 G~t~CP~Cg~~~e~ 61 (115)
T COG1885 48 GSTSCPKCGEPFES 61 (115)
T ss_pred ccccCCCCCCccce
Confidence 34456666665543
No 488
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.16 E-value=7e+02 Score=26.09 Aligned_cols=69 Identities=10% Similarity=0.020 Sum_probs=52.0
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcH-HHHHHHHhhCChHHHHhhhCCC-CChhhHHHHHHHHHh
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHA-SARKTMVDEGGVALISSLLGPF-TSHAVGSEAVGVLVN 218 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~r~~i~~~G~i~~Lv~lL~~~-~~~~v~~~Al~~L~~ 218 (450)
.+..|.+.|.+....++..||..|..++++.. .....|++.+.+.-+|...+.. .+..+++.++.+|-.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 45556667776677899999998887877543 3455888889998888888765 567899998888764
No 489
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=20.06 E-value=1.5e+02 Score=17.22 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHh
Q 041252 249 TKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK 285 (450)
Q Consensus 249 ~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~ 285 (450)
+|..|+.+|..+.. ..+++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd-----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD-----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S-----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-----------HHHHHHHHHHhc
Confidence 46677777776632 335677777665
No 490
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=20.02 E-value=2.1e+02 Score=25.69 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=44.3
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252 361 IPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT 435 (450)
Q Consensus 361 i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~ 435 (450)
++.++++..+.+..++..|+.+|..+-+..= +--.-.+|.|+.|..++ ++.++..|..+++.+...++
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGL------vnP~~cvp~lIAL~ts~-~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGL------VNPKQCVPTLIALETSP-NPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC------CChHHHHhHhhhhhCCC-ChHHHHHHHHHHHHHHHHhH
Confidence 4555666666677778878777766544331 00112467777777665 78889999888888765543
Done!