Query 041252
Match_columns 450
No_of_seqs 365 out of 2355
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 08:32:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 1.1E-32 3.7E-37 274.0 21.9 266 164-433 47-335 (354)
2 3nmz_A APC variant protein; pr 100.0 4E-31 1.4E-35 270.4 21.7 264 168-435 167-453 (458)
3 1xm9_A Plakophilin 1; armadill 100.0 3.3E-30 1.1E-34 265.5 19.9 283 150-437 3-365 (457)
4 3l6x_A Catenin delta-1; cateni 100.0 1.2E-29 4.2E-34 265.2 20.9 288 148-440 47-392 (584)
5 3nmz_A APC variant protein; pr 100.0 4.4E-29 1.5E-33 255.3 22.7 282 148-432 69-408 (458)
6 3l6x_A Catenin delta-1; cateni 100.0 2.1E-28 7.1E-33 255.9 22.7 291 148-442 89-497 (584)
7 3nmw_A APC variant protein; AR 100.0 1.1E-28 3.9E-33 245.0 19.6 245 148-394 72-340 (354)
8 1xm9_A Plakophilin 1; armadill 100.0 3.8E-28 1.3E-32 250.2 22.1 281 148-433 43-450 (457)
9 3now_A UNC-45 protein, SD10334 100.0 7.4E-28 2.5E-32 259.7 25.0 283 148-433 420-738 (810)
10 3ul1_B Importin subunit alpha- 100.0 4.4E-27 1.5E-31 245.6 27.6 281 148-433 99-388 (510)
11 3tpo_A Importin subunit alpha- 100.0 1.5E-26 5.3E-31 242.5 29.1 281 148-433 118-407 (529)
12 3now_A UNC-45 protein, SD10334 100.0 5.8E-27 2E-31 252.8 24.1 281 149-433 495-783 (810)
13 3tpo_A Importin subunit alpha- 99.9 2.7E-26 9.2E-31 240.6 25.7 282 148-432 161-449 (529)
14 4db8_A Armadillo-repeat protei 99.9 3.7E-26 1.3E-30 215.5 22.0 237 149-388 12-251 (252)
15 3ul1_B Importin subunit alpha- 99.9 3.4E-26 1.2E-30 238.8 24.0 282 148-432 142-430 (510)
16 4hxt_A De novo protein OR329; 99.9 6.3E-26 2.2E-30 213.0 22.7 240 150-392 3-245 (252)
17 4hxt_A De novo protein OR329; 99.9 3.7E-25 1.3E-29 207.8 23.6 241 191-436 2-245 (252)
18 4b8j_A Importin subunit alpha- 99.9 2.6E-25 8.9E-30 232.6 24.1 282 150-433 75-359 (528)
19 4b8j_A Importin subunit alpha- 99.9 1.4E-24 4.7E-29 227.1 29.5 280 148-433 116-401 (528)
20 1wa5_B Importin alpha subunit; 99.9 4.9E-24 1.7E-28 223.2 28.4 281 148-433 129-413 (530)
21 2jdq_A Importin alpha-1 subuni 99.9 1E-23 3.5E-28 215.0 28.3 282 148-433 106-391 (450)
22 1jdh_A Beta-catenin; beta-cate 99.9 2.4E-24 8.1E-29 224.5 23.9 282 149-433 59-386 (529)
23 4db8_A Armadillo-repeat protei 99.9 8.7E-25 3E-29 206.1 18.5 237 191-432 12-251 (252)
24 2jdq_A Importin alpha-1 subuni 99.9 2.7E-23 9.1E-28 211.9 30.8 279 149-433 64-348 (450)
25 3tt9_A Plakophilin-2; cell adh 99.9 6.1E-25 2.1E-29 204.6 15.2 196 192-389 9-230 (233)
26 1wa5_B Importin alpha subunit; 99.9 1.9E-23 6.6E-28 218.7 28.0 282 148-433 172-458 (530)
27 1jdh_A Beta-catenin; beta-cate 99.9 1.1E-23 3.7E-28 219.5 25.6 283 148-434 16-341 (529)
28 2z6h_A Catenin beta-1, beta-ca 99.9 9.3E-24 3.2E-28 226.4 25.8 282 148-433 13-337 (644)
29 2z6h_A Catenin beta-1, beta-ca 99.9 1.2E-23 4E-28 225.7 25.0 282 149-433 56-383 (644)
30 3tt9_A Plakophilin-2; cell adh 99.9 4.9E-24 1.7E-28 198.5 13.9 196 149-347 8-230 (233)
31 2z6g_A B-catenin; FULL-length, 99.9 2.4E-22 8.1E-27 219.9 23.6 280 149-434 192-474 (780)
32 4db6_A Armadillo repeat protei 99.9 3.7E-22 1.3E-26 182.9 19.1 197 149-347 12-210 (210)
33 4db6_A Armadillo repeat protei 99.9 9.2E-22 3.1E-26 180.2 21.2 198 231-432 10-209 (210)
34 2z6g_A B-catenin; FULL-length, 99.9 2.2E-22 7.7E-27 220.1 19.3 278 148-433 149-429 (780)
35 3opb_A SWI5-dependent HO expre 99.9 3.6E-21 1.2E-25 204.3 18.7 282 148-433 375-729 (778)
36 2kr4_A Ubiquitin conjugation f 99.9 1E-22 3.6E-27 159.5 5.0 74 63-137 8-81 (85)
37 2kre_A Ubiquitin conjugation f 99.9 2.9E-22 9.9E-27 161.6 6.0 75 62-137 22-96 (100)
38 1wgm_A Ubiquitin conjugation f 99.9 4.4E-22 1.5E-26 159.9 6.5 76 63-139 16-92 (98)
39 1xqr_A HSPBP1 protein; armadil 99.8 3.1E-20 1E-24 179.7 17.2 224 206-431 54-286 (296)
40 2f42_A STIP1 homology and U-bo 99.8 4.6E-21 1.6E-25 169.4 7.8 76 63-138 100-175 (179)
41 1xqr_A HSPBP1 protein; armadil 99.8 3.3E-19 1.1E-23 172.5 19.0 190 163-355 54-248 (296)
42 3opb_A SWI5-dependent HO expre 99.8 1.5E-18 5E-23 184.4 23.6 327 86-432 283-683 (778)
43 1t1h_A Gspef-atpub14, armadill 99.8 4.2E-20 1.4E-24 142.5 6.0 75 64-138 3-77 (78)
44 2yu4_A E3 SUMO-protein ligase 99.8 1.2E-19 4.1E-24 144.9 5.0 73 65-137 3-84 (94)
45 2c2l_A CHIP, carboxy terminus 99.8 2.8E-19 9.6E-24 171.9 5.0 75 64-138 203-277 (281)
46 2bay_A PRE-mRNA splicing facto 99.6 2.3E-17 7.8E-22 120.0 2.0 55 69-124 3-58 (61)
47 3ztg_A E3 ubiquitin-protein li 99.6 2.2E-16 7.4E-21 125.6 7.6 75 64-138 8-85 (92)
48 3m62_A Ubiquitin conjugation f 99.6 1.7E-16 5.9E-21 170.2 6.2 76 61-137 883-959 (968)
49 3fl2_A E3 ubiquitin-protein li 99.5 2.9E-15 9.8E-20 125.9 5.0 69 67-135 50-119 (124)
50 3htk_C E3 SUMO-protein ligase 99.5 1.9E-15 6.6E-20 139.6 2.9 72 64-135 176-251 (267)
51 1z6u_A NP95-like ring finger p 99.5 8.9E-15 3.1E-19 126.8 5.1 70 66-135 75-145 (150)
52 3grl_A General vesicular trans 99.5 5E-13 1.7E-17 138.8 19.0 276 148-429 20-339 (651)
53 3grl_A General vesicular trans 99.5 5.6E-12 1.9E-16 130.9 23.1 280 149-431 60-393 (651)
54 2y43_A E3 ubiquitin-protein li 99.5 3.6E-14 1.2E-18 114.2 4.7 70 67-137 20-90 (99)
55 3lrq_A E3 ubiquitin-protein li 99.4 5.4E-14 1.9E-18 113.4 4.5 70 66-135 19-89 (100)
56 2ckl_A Polycomb group ring fin 99.4 9.6E-14 3.3E-18 113.6 4.4 68 66-134 12-84 (108)
57 3hct_A TNF receptor-associated 99.4 1E-13 3.5E-18 115.3 3.9 70 64-133 13-82 (118)
58 2egp_A Tripartite motif-contai 99.4 9.6E-15 3.3E-19 112.5 -2.3 64 65-128 8-77 (79)
59 2csy_A Zinc finger protein 183 99.4 1.4E-13 4.8E-18 106.5 4.0 63 65-129 11-73 (81)
60 2ecw_A Tripartite motif-contai 99.4 5.4E-14 1.9E-18 109.7 1.6 64 65-128 15-83 (85)
61 2ecy_A TNF receptor-associated 99.4 3.5E-13 1.2E-17 99.9 5.4 55 65-119 11-65 (66)
62 1jm7_B BARD1, BRCA1-associated 99.4 1.7E-13 5.7E-18 113.9 3.7 67 67-136 20-87 (117)
63 3l11_A E3 ubiquitin-protein li 99.4 9.5E-14 3.2E-18 115.0 2.1 69 67-135 13-88 (115)
64 2ecv_A Tripartite motif-contai 99.4 7.7E-14 2.6E-18 108.8 1.4 64 65-128 15-83 (85)
65 2ckl_B Ubiquitin ligase protei 99.4 2E-13 7E-18 120.4 3.9 71 65-135 50-122 (165)
66 2yur_A Retinoblastoma-binding 99.4 5.4E-13 1.8E-17 101.3 5.6 59 64-122 10-71 (74)
67 2djb_A Polycomb group ring fin 99.4 7.6E-13 2.6E-17 99.8 5.9 57 65-122 11-68 (72)
68 1jm7_A BRCA1, breast cancer ty 99.3 6.5E-13 2.2E-17 109.3 4.7 69 66-134 18-88 (112)
69 4ayc_A E3 ubiquitin-protein li 99.3 7.2E-13 2.5E-17 113.3 4.2 64 67-133 51-114 (138)
70 2ysl_A Tripartite motif-contai 99.3 2.5E-12 8.5E-17 97.2 5.4 55 65-119 16-72 (73)
71 3knv_A TNF receptor-associated 99.3 4.5E-13 1.5E-17 114.7 1.1 68 64-131 26-102 (141)
72 3hcs_A TNF receptor-associated 99.3 1.5E-12 5.1E-17 115.4 3.9 69 64-132 13-81 (170)
73 1rmd_A RAG1; V(D)J recombinati 99.3 1.6E-12 5.4E-17 107.7 3.0 65 68-132 22-87 (116)
74 1g25_A CDK-activating kinase a 99.3 2.2E-12 7.6E-17 95.2 3.4 55 68-122 2-61 (65)
75 2ysj_A Tripartite motif-contai 99.3 5.1E-12 1.7E-16 92.6 5.3 46 65-110 16-63 (63)
76 3ltm_A Alpha-REP4; protein eng 99.2 6.3E-10 2.1E-14 101.3 19.4 190 190-436 18-207 (211)
77 1oyz_A Hypothetical protein YI 99.2 1.3E-09 4.4E-14 103.8 20.5 197 149-387 23-220 (280)
78 3ltm_A Alpha-REP4; protein eng 99.2 5.7E-10 2E-14 101.6 17.2 188 149-391 19-206 (211)
79 3ng2_A RNF4, snurf, ring finge 99.2 8E-12 2.7E-16 93.8 3.3 57 65-122 6-69 (71)
80 2ecj_A Tripartite motif-contai 99.2 2.5E-11 8.6E-16 87.2 4.7 46 65-110 11-58 (58)
81 2ct2_A Tripartite motif protei 99.1 3.6E-11 1.2E-15 94.2 5.8 54 64-117 10-69 (88)
82 3ltj_A Alpharep-4; protein eng 99.1 2.1E-09 7.2E-14 97.0 17.5 184 149-387 14-197 (201)
83 2d8t_A Dactylidin, ring finger 99.1 2.2E-11 7.6E-16 91.4 3.3 50 66-116 12-61 (71)
84 3ltj_A Alpharep-4; protein eng 99.1 5.2E-09 1.8E-13 94.4 18.8 184 191-431 14-197 (201)
85 2xeu_A Ring finger protein 4; 99.1 2.1E-11 7.3E-16 89.4 1.9 54 68-122 2-62 (64)
86 2ea6_A Ring finger protein 4; 99.1 4.9E-11 1.7E-15 88.8 3.2 51 65-116 11-68 (69)
87 1e4u_A Transcriptional repress 99.1 1.2E-10 4.1E-15 88.9 5.3 55 65-119 7-65 (78)
88 2ect_A Ring finger protein 126 99.1 1.2E-10 4E-15 89.1 4.8 57 65-122 11-70 (78)
89 1oyz_A Hypothetical protein YI 99.0 1.3E-08 4.6E-13 96.6 17.6 198 188-430 20-219 (280)
90 1chc_A Equine herpes virus-1 r 98.9 5.1E-10 1.8E-14 83.1 4.5 48 68-116 4-52 (68)
91 2ecm_A Ring finger and CHY zin 98.9 7E-10 2.4E-14 78.6 4.2 47 68-115 4-54 (55)
92 4fdd_A Transportin-1; heat rep 98.9 2.1E-08 7E-13 110.5 17.7 277 147-433 126-430 (852)
93 2ecn_A Ring finger protein 141 98.9 2.7E-10 9.1E-15 85.2 1.6 52 65-118 11-62 (70)
94 4ap4_A E3 ubiquitin ligase RNF 98.9 3.1E-10 1.1E-14 95.9 2.1 55 67-122 5-66 (133)
95 1bor_A Transcription factor PM 98.9 3.9E-10 1.3E-14 80.4 2.0 46 67-116 4-49 (56)
96 1iym_A EL5; ring-H2 finger, ub 98.9 1.1E-09 3.9E-14 77.5 4.3 47 67-114 3-53 (55)
97 2ep4_A Ring finger protein 24; 98.9 1.3E-09 4.4E-14 82.3 4.8 51 65-116 11-64 (74)
98 2kiz_A E3 ubiquitin-protein li 98.9 2.2E-09 7.6E-14 79.8 5.6 51 65-116 10-63 (69)
99 1v87_A Deltex protein 2; ring- 98.9 2.7E-09 9.2E-14 87.8 6.3 62 55-116 10-94 (114)
100 4gmo_A Putative uncharacterize 98.8 2.5E-08 8.6E-13 107.2 15.1 194 192-387 35-257 (684)
101 4fdd_A Transportin-1; heat rep 98.8 3.7E-08 1.3E-12 108.5 16.7 270 150-431 216-511 (852)
102 2l0b_A E3 ubiquitin-protein li 98.8 1.5E-09 5.3E-14 85.5 3.9 50 66-116 37-89 (91)
103 4gmo_A Putative uncharacterize 98.8 1.2E-08 4.1E-13 109.7 11.7 193 234-432 35-258 (684)
104 1x4j_A Ring finger protein 38; 98.8 1.7E-09 5.9E-14 81.9 3.5 49 67-116 21-72 (75)
105 2vgl_B AP-2 complex subunit be 98.8 1.3E-06 4.5E-11 92.2 24.8 265 150-434 50-384 (591)
106 1b3u_A Protein (protein phosph 98.7 4.4E-07 1.5E-11 94.7 18.4 264 151-431 89-352 (588)
107 4ic3_A E3 ubiquitin-protein li 98.7 3.1E-09 1.1E-13 80.2 1.4 44 68-116 23-67 (74)
108 2y1n_A E3 ubiquitin-protein li 98.7 8.6E-09 2.9E-13 101.3 4.7 49 68-116 331-379 (389)
109 1b3u_A Protein (protein phosph 98.7 2.4E-07 8.1E-12 96.8 15.9 264 152-433 167-432 (588)
110 1ibr_B P95, importin beta-1 su 98.7 2.6E-07 8.8E-12 93.4 15.6 278 148-434 127-439 (462)
111 2vgl_B AP-2 complex subunit be 98.6 1.2E-06 4E-11 92.5 18.6 267 149-435 121-422 (591)
112 4ap4_A E3 ubiquitin ligase RNF 98.6 6.9E-09 2.3E-13 87.5 0.9 55 67-122 70-131 (133)
113 2ecg_A Baculoviral IAP repeat- 98.6 2.6E-08 8.7E-13 75.4 2.9 44 68-116 24-68 (75)
114 1wim_A KIAA0161 protein; ring 98.5 1.4E-08 4.7E-13 80.5 1.2 46 68-113 4-61 (94)
115 2ecl_A Ring-box protein 2; RNF 98.5 4E-08 1.4E-12 75.5 3.6 47 69-116 15-76 (81)
116 2vje_A E3 ubiquitin-protein li 98.4 1.1E-07 3.9E-12 69.4 3.6 48 67-115 6-56 (64)
117 1w63_A Adapter-related protein 98.4 2.3E-05 7.8E-10 83.2 21.9 252 151-434 144-416 (618)
118 3dpl_R Ring-box protein 1; ubi 98.4 2.2E-07 7.6E-12 74.9 4.5 46 69-115 37-100 (106)
119 2vje_B MDM4 protein; proto-onc 98.4 1.5E-07 5.2E-12 68.5 2.9 46 69-115 7-55 (63)
120 1qgr_A Protein (importin beta 98.3 2.1E-05 7.2E-10 86.1 20.2 274 151-433 174-480 (876)
121 1qgr_A Protein (importin beta 98.3 2.4E-05 8.3E-10 85.6 20.1 276 148-434 127-439 (876)
122 2yho_A E3 ubiquitin-protein li 98.2 1.9E-07 6.5E-12 71.2 0.9 44 68-116 17-61 (79)
123 3t6p_A Baculoviral IAP repeat- 98.2 2.6E-07 8.8E-12 90.3 0.9 44 68-116 294-338 (345)
124 1ibr_B P95, importin beta-1 su 98.2 1.7E-05 5.6E-10 80.0 14.4 236 150-391 173-440 (462)
125 1w63_A Adapter-related protein 98.2 3.2E-05 1.1E-09 82.0 17.2 257 150-432 71-379 (618)
126 2bpt_A Importin beta-1 subunit 98.1 1.5E-05 5.1E-10 87.1 13.7 266 154-433 374-669 (861)
127 2qk2_A LP04448P; mini spindles 98.1 2.8E-05 9.7E-10 72.0 13.4 187 237-435 19-208 (242)
128 2ea5_A Cell growth regulator w 98.1 2.4E-06 8.4E-11 63.0 4.0 44 68-116 14-58 (68)
129 4a0k_B E3 ubiquitin-protein li 98.1 4.7E-07 1.6E-11 74.1 0.0 45 70-115 49-111 (117)
130 2bpt_A Importin beta-1 subunit 98.0 0.00025 8.6E-09 77.3 20.7 276 148-433 133-441 (861)
131 2d8s_A Cellular modulator of i 98.0 5.3E-06 1.8E-10 63.2 5.1 49 68-116 14-70 (80)
132 3dad_A FH1/FH2 domain-containi 98.0 0.00023 7.7E-09 68.4 17.1 186 149-335 118-325 (339)
133 1te4_A Conserved protein MTH18 98.0 2.9E-06 1E-10 71.0 3.4 120 190-343 11-130 (131)
134 1u6g_C TIP120 protein, CAND1; 98.0 1.4E-05 4.8E-10 91.3 9.5 273 150-435 7-287 (1230)
135 3b2a_A TON_1937, putative unch 97.9 0.00012 4.1E-09 66.4 12.9 213 119-348 6-220 (265)
136 2qk2_A LP04448P; mini spindles 97.9 2.1E-05 7.2E-10 72.9 8.3 181 153-347 19-206 (242)
137 2vgl_A Adaptor protein complex 97.8 0.0019 6.7E-08 68.3 22.1 257 151-434 148-435 (621)
138 3b2a_A TON_1937, putative unch 97.8 0.00031 1.1E-08 63.7 13.0 226 192-433 34-262 (265)
139 3dad_A FH1/FH2 domain-containi 97.7 0.00069 2.4E-08 65.0 15.4 186 235-422 120-326 (339)
140 1te4_A Conserved protein MTH18 97.7 1.4E-06 4.8E-11 73.0 -3.2 121 231-385 10-130 (131)
141 2qk1_A Protein STU2; STU2P, XM 97.7 0.00034 1.2E-08 65.2 12.8 192 239-434 22-222 (249)
142 2qk1_A Protein STU2; STU2P, XM 97.6 0.00014 4.8E-09 67.9 8.4 187 154-346 21-220 (249)
143 2vgl_A Adaptor protein complex 97.6 0.024 8.2E-07 59.8 26.2 280 120-431 85-397 (621)
144 2iw3_A Elongation factor 3A; a 97.5 0.0032 1.1E-07 69.4 18.1 272 151-433 16-325 (986)
145 1ho8_A Vacuolar ATP synthase s 97.5 0.0021 7.1E-08 64.7 15.2 231 154-388 172-476 (480)
146 1u6g_C TIP120 protein, CAND1; 97.5 0.00025 8.7E-09 80.9 9.7 228 193-433 8-244 (1230)
147 2db0_A 253AA long hypothetical 97.3 0.055 1.9E-06 47.3 19.5 208 150-387 33-245 (253)
148 2ct0_A Non-SMC element 1 homol 97.2 0.00046 1.6E-08 51.3 5.2 46 70-115 16-63 (74)
149 3tjz_B Coatomer subunit gamma; 97.2 0.00082 2.8E-08 65.8 8.2 257 151-445 70-327 (355)
150 3vk6_A E3 ubiquitin-protein li 97.0 0.0005 1.7E-08 53.4 3.9 46 71-116 3-49 (101)
151 1vyx_A ORF K3, K3RING; zinc-bi 97.0 0.00073 2.5E-08 48.2 4.2 47 69-115 6-58 (60)
152 2db0_A 253AA long hypothetical 96.9 0.13 4.3E-06 45.1 18.2 105 231-345 30-135 (253)
153 3tjz_B Coatomer subunit gamma; 96.8 0.048 1.6E-06 53.2 17.2 238 120-391 79-319 (355)
154 1ho8_A Vacuolar ATP synthase s 96.8 0.015 5.3E-07 58.4 13.9 236 196-434 172-479 (480)
155 4ady_A RPN2, 26S proteasome re 96.8 0.17 6E-06 55.2 22.6 194 205-431 521-718 (963)
156 3oc3_A Helicase MOT1, MOT1; re 96.4 0.028 9.7E-07 57.3 12.6 243 150-428 175-432 (800)
157 3k1l_B Fancl; UBC, ring, RWD, 96.3 0.00085 2.9E-08 64.2 0.6 46 70-115 309-372 (381)
158 4ady_A RPN2, 26S proteasome re 95.8 0.29 9.9E-06 53.5 17.8 101 318-436 578-680 (963)
159 3i2d_A E3 SUMO-protein ligase 95.7 0.007 2.4E-07 58.7 4.3 63 69-131 249-315 (371)
160 4ffb_C Protein STU2; tubulin f 95.6 0.12 4E-06 48.4 12.1 185 154-347 14-213 (278)
161 2jun_A Midline-1; B-BOX, TRIM, 95.2 0.0078 2.7E-07 47.5 2.3 34 68-101 2-38 (101)
162 4fo9_A E3 SUMO-protein ligase 95.0 0.017 5.9E-07 55.8 4.3 63 68-130 214-280 (360)
163 2iw3_A Elongation factor 3A; a 94.8 0.94 3.2E-05 49.9 17.8 217 150-386 96-322 (986)
164 2of3_A ZYG-9; multifunctional 94.7 0.52 1.8E-05 43.8 13.5 178 153-345 50-235 (266)
165 3ebb_A Phospholipase A2-activa 94.1 0.56 1.9E-05 44.6 12.5 176 162-338 115-298 (304)
166 1weo_A Cellulose synthase, cat 93.6 0.14 4.8E-06 38.6 5.7 47 69-115 16-69 (93)
167 3ebb_A Phospholipase A2-activa 93.6 0.75 2.6E-05 43.7 12.4 183 193-379 105-297 (304)
168 2fv2_A RCD1 required for cell 93.3 0.55 1.9E-05 43.1 10.4 96 332-429 71-171 (268)
169 2fv2_A RCD1 required for cell 93.1 0.69 2.4E-05 42.5 10.6 150 165-315 72-234 (268)
170 3eg5_B Protein diaphanous homo 92.5 6.6 0.00023 38.4 17.8 177 151-329 68-276 (383)
171 2f31_A Diaphanous protein homo 92.5 2.3 7.9E-05 38.5 13.6 136 189-324 41-206 (233)
172 3nw0_A Non-structural maintena 92.3 0.15 5.2E-06 46.7 5.2 48 69-116 180-229 (238)
173 4ffb_C Protein STU2; tubulin f 91.7 1.5 5E-05 40.7 11.6 189 235-433 12-213 (278)
174 2f31_A Diaphanous protein homo 91.5 4.5 0.00016 36.5 14.3 148 274-422 42-218 (233)
175 1wa5_C Importin alpha RE-expor 91.0 2.3 7.8E-05 46.9 14.0 256 165-433 377-671 (960)
176 3eg5_B Protein diaphanous homo 90.1 1.3 4.5E-05 43.5 9.9 116 316-431 108-245 (383)
177 1upk_A MO25 protein; transfera 88.8 7.3 0.00025 37.2 13.5 209 125-349 67-286 (341)
178 2bnx_A Diaphanous protein homo 88.0 12 0.0004 36.7 15.1 145 189-333 45-219 (386)
179 3u0r_A Apoptosis inhibitor 5; 87.4 15 0.00051 36.9 15.2 121 160-301 39-159 (507)
180 2of3_A ZYG-9; multifunctional 87.2 4.7 0.00016 37.3 11.0 137 244-393 98-241 (266)
181 2x1g_F Cadmus; transport prote 86.0 15 0.00051 40.3 16.3 135 245-390 476-617 (971)
182 2x19_B Importin-13; nuclear tr 84.9 15 0.00051 40.1 15.6 177 243-430 459-644 (963)
183 1upk_A MO25 protein; transfera 84.9 27 0.00094 33.2 17.2 208 229-440 74-291 (341)
184 2bnx_A Diaphanous protein homo 84.8 21 0.00073 34.7 15.1 148 274-422 46-222 (386)
185 1wa5_C Importin alpha RE-expor 84.5 13 0.00043 40.9 14.8 184 154-345 460-669 (960)
186 4hat_C Exportin-1; heat repeat 84.3 5.9 0.0002 44.1 11.9 145 245-392 465-622 (1023)
187 3c2g_A SYS-1 protein; beta-cat 83.7 9.4 0.00032 36.7 11.1 107 218-326 268-376 (619)
188 1x5b_A Signal transducing adap 83.6 4.1 0.00014 34.7 8.1 78 360-437 53-130 (163)
189 1lrv_A LRV, leucine-rich repea 83.4 0.83 2.8E-05 41.9 3.9 31 183-214 90-120 (244)
190 3u0r_A Apoptosis inhibitor 5; 81.8 4.4 0.00015 40.7 8.5 118 289-428 41-159 (507)
191 1lrv_A LRV, leucine-rich repea 81.7 0.67 2.3E-05 42.6 2.5 80 126-255 41-120 (244)
192 2x19_B Importin-13; nuclear tr 81.1 66 0.0023 34.9 19.5 218 205-435 462-717 (963)
193 3zyq_A Hepatocyte growth facto 80.5 3.9 0.00013 36.9 7.2 78 360-437 46-123 (226)
194 3oc3_A Helicase MOT1, MOT1; re 80.3 5.8 0.0002 40.8 8.8 185 164-382 243-430 (800)
195 2kkx_A Uncharacterized protein 80.0 1.5 5.2E-05 33.7 3.5 52 67-119 25-82 (102)
196 3c2g_A SYS-1 protein; beta-cat 79.8 45 0.0015 32.1 14.7 110 300-412 266-377 (619)
197 3mjh_B Early endosome antigen 79.8 0.4 1.4E-05 29.5 0.2 16 69-84 5-20 (34)
198 2x1g_F Cadmus; transport prote 79.7 74 0.0025 34.6 20.6 212 207-433 479-723 (971)
199 3ldz_A STAM-1, signal transduc 77.8 6.7 0.00023 32.4 7.3 77 360-437 43-119 (140)
200 2jvx_A NF-kappa-B essential mo 77.4 0.63 2.2E-05 27.2 0.6 17 67-83 1-17 (28)
201 1dvp_A HRS, hepatocyte growth 77.0 6.5 0.00022 35.2 7.6 77 360-436 43-119 (220)
202 1juq_A ADP-ribosylation factor 74.9 6.3 0.00022 33.8 6.5 79 360-438 51-134 (171)
203 4hat_C Exportin-1; heat repeat 74.0 50 0.0017 36.6 15.1 217 150-388 17-263 (1023)
204 3g2s_A C-terminal fragment of 73.8 9.9 0.00034 31.8 7.3 79 360-438 49-132 (149)
205 3ibv_A Exportin-T; karyopherin 72.9 68 0.0023 35.3 15.9 220 122-356 21-273 (980)
206 1mhq_A ADP-ribosylation factor 71.1 8.5 0.00029 32.1 6.3 79 360-438 39-122 (148)
207 3l9t_A Putative uncharacterize 69.6 13 0.00043 33.7 7.4 141 235-397 73-216 (240)
208 3m1i_C Exportin-1; heat repeat 69.1 54 0.0018 36.2 14.2 220 150-389 17-264 (1049)
209 2jne_A Hypothetical protein YF 68.3 0.18 6.2E-06 38.6 -4.2 40 70-115 33-72 (101)
210 1x5b_A Signal transducing adap 66.8 40 0.0014 28.4 9.8 71 149-219 52-123 (163)
211 3gjx_A Exportin-1; transport, 65.4 74 0.0025 35.4 14.1 218 149-390 28-277 (1073)
212 1m3v_A FLIN4, fusion of the LI 65.1 2.3 7.9E-05 34.2 1.5 51 67-118 30-83 (122)
213 2k5c_A Uncharacterized protein 63.9 1.6 5.4E-05 32.1 0.2 53 70-122 9-69 (95)
214 3zyq_A Hepatocyte growth facto 62.6 29 0.00098 31.1 8.5 72 149-220 45-117 (226)
215 2cs3_A Protein C14ORF4, MY039 62.4 6.3 0.00022 29.0 3.2 43 68-110 14-64 (93)
216 1juq_A ADP-ribosylation factor 61.4 64 0.0022 27.4 10.1 72 149-220 50-127 (171)
217 3pwf_A Rubrerythrin; non heme 61.3 5.5 0.00019 34.2 3.3 10 104-113 153-162 (170)
218 2xjy_A Rhombotin-2; oncoprotei 58.6 6.1 0.00021 31.9 3.0 49 67-116 27-78 (131)
219 3vhs_A ATPase wrnip1; zinc fin 58.5 2.8 9.7E-05 23.5 0.6 12 69-80 6-17 (29)
220 1lsh_A Lipovitellin (LV-1N, LV 58.0 1.1E+02 0.0037 34.0 13.9 153 124-307 418-578 (1056)
221 2xqn_T Testin, TESS; metal-bin 57.8 7.6 0.00026 31.1 3.4 47 67-116 28-75 (126)
222 1elk_A Target of MYB1; superhe 57.4 27 0.00094 29.2 7.0 77 360-436 54-134 (157)
223 3m1i_C Exportin-1; heat repeat 56.8 49 0.0017 36.6 10.8 143 245-390 465-620 (1049)
224 1mhq_A ADP-ribosylation factor 55.6 86 0.003 25.8 10.2 72 149-220 38-115 (148)
225 1yuz_A Nigerythrin; rubrythrin 54.6 7.1 0.00024 34.5 2.9 36 58-113 160-195 (202)
226 1dvp_A HRS, hepatocyte growth 53.5 62 0.0021 28.6 9.1 72 149-220 42-114 (220)
227 6rxn_A Rubredoxin; electron tr 53.0 4 0.00014 26.9 0.7 13 65-77 26-38 (46)
228 2jrp_A Putative cytoplasmic pr 51.5 1 3.5E-05 33.6 -2.6 40 70-115 3-42 (81)
229 3uk3_C Zinc finger protein 217 50.5 5.8 0.0002 26.1 1.3 40 69-115 4-43 (57)
230 3l9t_A Putative uncharacterize 50.2 1.4E+02 0.0049 26.8 10.9 143 151-315 72-218 (240)
231 3a6p_A Exportin-5; exportin-5, 50.0 1.4E+02 0.0049 33.5 13.4 220 151-390 13-278 (1204)
232 2ko5_A Ring finger protein Z; 49.9 10 0.00035 28.9 2.6 50 65-116 24-73 (99)
233 3ibv_A Exportin-T; karyopherin 49.1 3E+02 0.01 30.1 16.7 209 162-391 21-263 (980)
234 3pst_A Protein DOA1; protein d 48.9 25 0.00085 34.7 5.9 138 198-347 235-390 (425)
235 4rxn_A Rubredoxin; electron tr 48.6 5.1 0.00017 27.3 0.7 13 65-77 32-44 (54)
236 1e8j_A Rubredoxin; iron-sulfur 47.8 6.1 0.00021 26.7 1.0 13 65-77 32-44 (52)
237 1vdy_A Hypothetical protein (R 47.5 29 0.001 28.6 5.3 75 361-435 51-133 (140)
238 3ldz_A STAM-1, signal transduc 45.5 24 0.00082 29.0 4.6 67 320-387 45-113 (140)
239 1rut_X Flinc4, fusion protein 45.4 4.9 0.00017 34.9 0.3 49 67-116 30-81 (188)
240 3a6p_A Exportin-5; exportin-5, 44.6 3.5E+02 0.012 30.4 15.4 180 160-347 58-277 (1204)
241 3l3f_X Protein DOA1, DOA1/UFD3 43.5 23 0.00079 34.2 4.7 137 198-346 172-326 (362)
242 1yk4_A Rubredoxin, RD; electro 43.2 6.9 0.00024 26.4 0.7 13 65-77 31-43 (52)
243 3g2s_A C-terminal fragment of 41.8 99 0.0034 25.6 7.9 72 149-220 48-125 (149)
244 2v3b_B Rubredoxin 2, rubredoxi 41.8 7.2 0.00025 26.7 0.6 13 65-77 32-44 (55)
245 2kn9_A Rubredoxin; metalloprot 41.3 8.3 0.00028 28.6 0.9 13 65-77 56-68 (81)
246 1bbo_A Human enhancer-binding 41.1 6.5 0.00022 25.9 0.3 35 70-115 2-40 (57)
247 2kre_A Ubiquitin conjugation f 40.9 14 0.00047 28.5 2.2 33 69-103 63-95 (100)
248 2d8z_A Four and A half LIM dom 40.8 21 0.00071 25.0 3.1 34 67-100 29-63 (70)
249 2o35_A Hypothetical protein DU 40.7 11 0.00038 28.9 1.6 13 90-102 42-54 (105)
250 3gjx_A Exportin-1; transport, 40.7 4.2E+02 0.014 29.4 15.8 207 125-347 44-276 (1073)
251 3fyb_A Protein of unknown func 40.5 11 0.00039 28.8 1.6 13 90-102 41-53 (104)
252 2d8x_A Protein pinch; LIM doma 40.2 18 0.00061 25.4 2.6 37 66-102 28-65 (70)
253 2dar_A PDZ and LIM domain prot 39.8 21 0.00073 26.5 3.2 35 67-101 49-84 (90)
254 3gae_A Protein DOA1; UFD3, CDC 39.3 24 0.00083 32.1 4.0 129 209-346 71-217 (253)
255 1dx8_A Rubredoxin; electron tr 38.7 8.8 0.0003 27.7 0.7 14 65-78 36-49 (70)
256 3qml_C Protein SLS1, nucleotid 38.5 1.9E+02 0.0064 27.1 9.8 146 235-387 24-188 (315)
257 1wig_A KIAA1808 protein; LIM d 38.0 14 0.00049 26.3 1.8 36 67-102 29-66 (73)
258 4gzn_C ZFP-57, zinc finger pro 37.7 9.6 0.00033 26.2 0.8 36 70-116 5-44 (60)
259 1x61_A Thyroid receptor intera 37.5 35 0.0012 23.8 3.9 36 67-102 31-67 (72)
260 2jtn_A LIM domain-binding prot 37.2 28 0.00094 29.8 3.9 48 67-117 85-132 (182)
261 2rgt_A Fusion of LIM/homeobox 36.5 37 0.0013 28.5 4.6 47 67-116 31-77 (169)
262 2cur_A Skeletal muscle LIM-pro 36.3 28 0.00095 24.2 3.1 35 67-101 29-64 (69)
263 1nyp_A Pinch protein; LIM doma 36.0 18 0.00062 25.0 2.1 33 67-99 29-62 (66)
264 1lko_A Rubrerythrin all-iron(I 35.5 14 0.00048 32.2 1.6 10 104-113 171-180 (191)
265 1iml_A CRIP, cysteine rich int 35.2 38 0.0013 24.0 3.8 45 67-114 25-71 (76)
266 2ctd_A Zinc finger protein 512 34.9 21 0.00071 26.9 2.4 39 69-115 34-73 (96)
267 1x6a_A LIMK-2, LIM domain kina 34.5 33 0.0011 24.7 3.4 36 67-102 39-77 (81)
268 1x6e_A Zinc finger protein 24; 34.4 7.4 0.00025 27.2 -0.3 36 69-115 14-53 (72)
269 2l4z_A DNA endonuclease RBBP8, 34.3 22 0.00077 28.4 2.6 29 69-97 88-119 (123)
270 1s24_A Rubredoxin 2; electron 34.1 12 0.0004 28.2 0.8 13 65-77 64-76 (87)
271 2dj7_A Actin-binding LIM prote 33.5 19 0.00063 26.3 1.8 34 67-100 40-73 (80)
272 2gqj_A Zinc finger protein KIA 33.3 14 0.00049 27.7 1.2 41 68-115 23-65 (98)
273 2epq_A POZ-, at HOOK-, and zin 32.6 14 0.00048 22.8 0.9 12 70-81 11-22 (45)
274 2eps_A POZ-, at HOOK-, and zin 32.0 13 0.00044 24.3 0.7 36 69-115 12-52 (54)
275 2cor_A Pinch protein; LIM doma 31.9 20 0.00069 26.0 1.8 32 67-98 39-70 (79)
276 2adr_A ADR1; transcription reg 31.7 8.7 0.0003 25.6 -0.3 35 70-115 3-41 (60)
277 2lce_A B-cell lymphoma 6 prote 31.7 13 0.00044 26.1 0.6 38 68-116 16-57 (74)
278 2cup_A Skeletal muscle LIM-pro 31.2 36 0.0012 25.7 3.2 46 67-115 31-77 (101)
279 1x64_A Alpha-actinin-2 associa 30.7 25 0.00086 26.0 2.2 34 67-100 49-83 (89)
280 2kmk_A Zinc finger protein GFI 30.3 15 0.00052 25.9 0.9 10 105-114 58-67 (82)
281 1vq8_Z 50S ribosomal protein L 30.0 11 0.00038 28.1 0.1 55 52-125 11-66 (83)
282 1wil_A KIAA1045 protein; ring 29.9 69 0.0023 23.8 4.2 34 65-99 11-47 (89)
283 3qml_C Protein SLS1, nucleotid 29.9 1.2E+02 0.0042 28.4 7.1 134 207-345 43-188 (315)
284 2ee8_A Protein ODD-skipped-rel 29.8 28 0.00095 26.1 2.4 10 105-114 74-83 (106)
285 3s4w_B Protein FACD2, fanconi 29.4 6.7E+02 0.023 28.5 17.4 275 151-449 159-484 (1323)
286 1wyh_A SLIM 2, skeletal muscle 29.3 29 0.001 24.3 2.3 34 67-100 31-65 (72)
287 1elk_A Target of MYB1; superhe 29.3 2.4E+02 0.0082 23.2 10.1 72 149-220 53-129 (157)
288 1j2o_A FLIN2, fusion of rhombo 29.0 56 0.0019 25.4 4.1 36 67-102 28-66 (114)
289 2ytm_A Zinc finger protein 28 28.8 29 0.00097 21.4 1.9 14 70-83 13-26 (46)
290 2lv2_A Insulinoma-associated p 28.7 9.8 0.00034 28.3 -0.5 37 68-115 27-67 (85)
291 2eov_A Zinc finger protein 484 28.6 25 0.00084 21.6 1.6 13 70-82 13-25 (46)
292 2ytt_A Zinc finger protein 473 28.5 27 0.00091 21.5 1.8 14 70-83 13-26 (46)
293 1vsy_5 Proteasome activator BL 28.2 2.2E+02 0.0075 31.4 10.0 186 149-345 133-364 (997)
294 2ely_A Zinc finger protein 224 27.7 30 0.001 21.3 1.9 14 69-82 12-25 (46)
295 2em8_A Zinc finger protein 224 27.3 26 0.0009 21.6 1.5 14 69-82 12-25 (46)
296 1llm_C Chimera of ZIF23-GCN4; 26.8 17 0.0006 26.3 0.7 41 69-116 3-43 (88)
297 1b8t_A Protein (CRP1); LIM dom 26.8 37 0.0013 29.2 2.9 35 67-101 32-67 (192)
298 3vld_A DNA mismatch repair pro 26.2 5E+02 0.017 25.9 11.2 112 229-346 112-225 (500)
299 2dlq_A GLI-kruppel family memb 26.1 30 0.001 26.6 2.0 13 69-81 35-47 (124)
300 1x62_A C-terminal LIM domain p 25.7 24 0.00081 25.5 1.2 35 67-101 39-74 (79)
301 2d9h_A Zinc finger protein 692 25.3 22 0.00075 25.0 0.9 40 69-115 7-49 (78)
302 2l3k_A Rhombotin-2, linker, LI 25.1 44 0.0015 26.4 2.8 36 67-102 34-71 (123)
303 2emk_A Zinc finger protein 28 24.8 34 0.0012 21.0 1.7 13 70-82 13-25 (46)
304 2yt9_A Zinc finger-containing 24.8 18 0.0006 26.6 0.3 10 105-114 66-75 (95)
305 2lcq_A Putative toxin VAPC6; P 24.4 16 0.00054 30.9 -0.0 11 104-114 148-158 (165)
306 1yc5_A NAD-dependent deacetyla 24.1 66 0.0023 29.0 4.2 49 86-135 126-180 (246)
307 2emy_A Zinc finger protein 268 24.1 29 0.00098 21.3 1.3 14 69-82 12-25 (46)
308 2emh_A Zinc finger protein 484 24.0 29 0.001 21.3 1.3 14 69-82 12-25 (46)
309 1x4k_A Skeletal muscle LIM-pro 23.6 42 0.0014 23.4 2.2 34 67-100 31-65 (72)
310 1x3h_A Leupaxin; paxillin fami 23.6 65 0.0022 22.9 3.3 34 67-100 39-73 (80)
311 2eoo_A ZFP-95, zinc finger pro 23.5 32 0.0011 21.1 1.4 14 69-82 12-25 (46)
312 2emp_A Zinc finger protein 347 23.4 34 0.0012 20.9 1.5 14 69-82 12-25 (46)
313 2kdx_A HYPA, hydrogenase/ureas 23.2 32 0.0011 27.3 1.6 10 104-113 89-99 (119)
314 1x4l_A Skeletal muscle LIM-pro 23.1 51 0.0017 23.0 2.6 32 67-98 33-65 (72)
315 2d8y_A Eplin protein; LIM doma 23.1 58 0.002 24.0 3.0 35 67-101 40-75 (91)
316 1g47_A Pinch protein; LIM doma 22.9 35 0.0012 24.2 1.7 33 67-99 37-70 (77)
317 2ytd_A Zinc finger protein 473 22.8 29 0.00099 21.3 1.1 14 69-82 12-25 (46)
318 1a1h_A QGSR zinc finger peptid 22.7 26 0.0009 25.2 1.0 13 69-81 34-46 (90)
319 3rru_A TOM1L1 protein; structu 22.6 66 0.0022 26.8 3.5 78 360-437 54-135 (152)
320 2eoq_A Zinc finger protein 224 22.3 32 0.0011 21.1 1.2 13 70-82 13-25 (46)
321 1x5w_A Zinc finger protein 64, 22.3 12 0.0004 25.9 -1.1 36 69-115 9-48 (70)
322 3f2b_A DNA-directed DNA polyme 21.8 48 0.0017 36.6 3.1 38 65-114 498-537 (1041)
323 2cu8_A Cysteine-rich protein 2 21.7 39 0.0013 24.0 1.7 34 67-100 34-69 (76)
324 2emm_A ZFP-95, zinc finger pro 21.7 29 0.001 21.2 0.9 14 69-82 12-25 (46)
325 2cuq_A Four and A half LIM dom 21.6 68 0.0023 22.8 3.1 35 67-101 39-74 (80)
326 2yu8_A Zinc finger protein 347 21.6 38 0.0013 20.7 1.5 15 69-83 12-26 (46)
327 2ytk_A Zinc finger protein 347 21.4 31 0.0011 21.2 1.0 13 69-81 12-24 (46)
328 3gox_A Restriction endonucleas 21.3 53 0.0018 28.4 2.6 49 67-115 73-148 (200)
329 1f2i_G Fusion of N-terminal 17 21.3 26 0.0009 24.1 0.7 12 104-115 49-60 (73)
330 2wbs_A Krueppel-like factor 4; 21.2 85 0.0029 22.1 3.6 10 105-114 66-75 (89)
331 2drp_A Protein (tramtrack DNA- 21.1 17 0.00057 24.6 -0.5 36 69-115 10-51 (66)
332 1wii_A Hypothetical UPF0222 pr 20.5 34 0.0012 25.6 1.1 41 64-115 18-58 (85)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=1.1e-32 Score=273.95 Aligned_cols=266 Identities=21% Similarity=0.190 Sum_probs=231.9
Q ss_pred HHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCC----------CCChhhHHHHHHHHHhcCCCc-hhhhhccC-
Q 041252 164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGP----------FTSHAVGSEAVGVLVNLTLDS-ESKTNLMQ- 231 (450)
Q Consensus 164 ~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~----------~~~~~v~~~Al~~L~~Ls~~~-~~k~~i~~- 231 (450)
..+.+|+++|.+++.+ +++|+.|++.|++++|+.+|.. ..+..++.+|+++|.||+.++ ++|..+..
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4556899999999865 7899999999999999999942 113568999999999999866 47877754
Q ss_pred CCchHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-ChHH
Q 041252 232 PAKVSLLVDMLNEGSVETKINCTRLIEKLMEE-KDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-LNEV 309 (450)
Q Consensus 232 ~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~-~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~~~~ 309 (450)
.|+|+.|+.+|++++.++++.|+++|++|+.. ++.++..+.+.|+++.|+++|....++.+++.++++|+||+. ++++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 56699999999999999999999999999874 445666777889999999986543367889999999999998 7789
Q ss_pred HHHHH-hcCCHHHHHHhcCCCCh----hHHHHHHHHHHHhcC----ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHH
Q 041252 310 RSLVV-SIGAVPQLVELLPSLDP----DCLQLALCILDALSS----LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYAL 380 (450)
Q Consensus 310 ~~~iv-~~G~v~~Lv~lL~~~~~----~~~~~al~~L~~L~~----~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~ 380 (450)
|..++ ..|+++.|+++|.+++. ++++.|+++|++|+. +++++..+.+ .|+|+.|+++|.+++..++++|+
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~ 284 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNAC 284 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHcCCChHHHHHHH
Confidence 99998 69999999999987654 589999999999995 7999999998 89999999999999999999999
Q ss_pred HHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 381 SILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 381 ~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
++|++|+..++ +.++.+++.|+++.|+.+++++ ++.+|+.|+.+|+++..+
T Consensus 285 ~aL~nLa~~~~-~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 285 GTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHTSSCH-HHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCH-HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcC
Confidence 99999997665 4466788999999999999998 788999999999999887
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=4e-31 Score=270.41 Aligned_cols=264 Identities=21% Similarity=0.188 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCC----------CCChhhHHHHHHHHHhcCCCch-hhhhcc-CCCch
Q 041252 168 QALKELHQIAAAHASARKTMVDEGGVALISSLLGP----------FTSHAVGSEAVGVLVNLTLDSE-SKTNLM-QPAKV 235 (450)
Q Consensus 168 ~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~----------~~~~~v~~~Al~~L~~Ls~~~~-~k~~i~-~~g~i 235 (450)
+|+++|.+++. +++||..|.+.|++++|+.+|.. ..+..++++|+++|.||+.+++ +|..+. ..|+|
T Consensus 167 qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 167 PAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 89999999964 58899999999999999999942 1135689999999999998764 777775 45679
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcc-CCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-ChHHHHHH
Q 041252 236 SLLVDMLNEGSVETKINCTRLIEKLMEE-KDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-LNEVRSLV 313 (450)
Q Consensus 236 ~~Lv~lL~~~~~~~~~~aa~~L~~La~~-~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~~~~~~~i 313 (450)
+.|+.+|.+++.++++.|+++|++|+.. ++.++..+.+.|+++.|+++|....++.+++.++++|+||+. +++++..+
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999999999999999999874 445667777889999999986554467889999999999998 78899999
Q ss_pred H-hcCCHHHHHHhcCCCCh----hHHHHHHHHHHHhcC----ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252 314 V-SIGAVPQLVELLPSLDP----DCLQLALCILDALSS----LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW 384 (450)
Q Consensus 314 v-~~G~v~~Lv~lL~~~~~----~~~~~al~~L~~L~~----~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~ 384 (450)
+ ..|+++.|+++|.+.+. ++++.|+++|+||+. +++++..+.+ .|+|+.|+++|.+++..++++|+++|+
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 9 69999999999987654 489999999999994 7999999998 899999999999999999999999999
Q ss_pred HhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252 385 SICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT 435 (450)
Q Consensus 385 ~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~ 435 (450)
+++..++ +.+..+++.|+++.|+.+++++ ++.+++.|+.+|+++..+.+
T Consensus 405 nLa~~~~-~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 405 NLSARNP-KDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHSSCH-HHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTCCS
T ss_pred HHHcCCH-HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCH
Confidence 9997665 4466788999999999999988 78899999999999887743
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=3.3e-30 Score=265.53 Aligned_cols=283 Identities=18% Similarity=0.186 Sum_probs=237.8
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chhhhh
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SESKTN 228 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k~~ 228 (450)
.++.++..|++++.+.|..|+.+|++++..++.+|..+++.|+||.|+.+|++. +..++..|+++|.||+.+ +++|..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 478899999999999999999999999987777898999999999999999875 788999999999999986 899999
Q ss_pred ccCCCchHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHh--------cC-------CCccc
Q 041252 229 LMQPAKVSLLVDMLN-EGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK--------NK-------RHPNG 292 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~-~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~--------~~-------~~~~~ 292 (450)
|++.|+|+.|+.+|. ++++++++.|+++|++|+..++ .+..+.+ |+++.|+++|. +. .++.+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~-~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHH-hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 999999999999999 8899999999999999998754 4444556 99999999993 22 12334
Q ss_pred hhHHHHHHHHhccChHHHHHHHhc-CCHHHHHHhcCC------CChhHHHHHHHHHHHhcCCh-----------------
Q 041252 293 ILPGLSLLRSICLLNEVRSLVVSI-GAVPQLVELLPS------LDPDCLQLALCILDALSSLP----------------- 348 (450)
Q Consensus 293 ~~~al~aL~~Ls~~~~~~~~iv~~-G~v~~Lv~lL~~------~~~~~~~~al~~L~~L~~~~----------------- 348 (450)
.+.|+++|+|||.+++++..+++. |++++|+.+|.+ .+..+++.|+.+|++|+...
T Consensus 160 ~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 559999999999889999999998 999999999975 45679999999999997421
Q ss_pred ----------------------------------hhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccCchh
Q 041252 349 ----------------------------------EGKLALKDCANTIPNTVRLLMRV-SEDCTQYALSILWSICKIAPEE 393 (450)
Q Consensus 349 ----------------------------------e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~~ 393 (450)
++...+.+ .|+++.|+.+|.+. ++.+++.|+++|+++|..+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH-SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhC-cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 12223344 67899999999875 5899999999999999865432
Q ss_pred ---HHHHHH-hcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCC
Q 041252 394 ---CSSAAV-DAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDT 437 (450)
Q Consensus 394 ---~~~~~~-~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~ 437 (450)
..+.++ +.|+++.|+.+++++ +..+++.|+++|++++.+.+..
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~~~~ 365 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHPLLH 365 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSGGGH
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCHHHH
Confidence 213344 589999999999998 7889999999999998875443
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=1.2e-29 Score=265.23 Aligned_cols=288 Identities=16% Similarity=0.164 Sum_probs=236.5
Q ss_pred hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC--chh
Q 041252 148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD--SES 225 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~--~~~ 225 (450)
++.++.||..|.+++.+.|..|+.+|++++..+.++|..|++.|+||.|+.+|++. +..+++.|+++|.||+.+ +++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSSCHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccCCHHH
Confidence 46799999999999999999999999999998899999999999999999999886 789999999999999984 799
Q ss_pred hhhccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhc-----------------C
Q 041252 226 KTNLMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN-----------------K 287 (450)
Q Consensus 226 k~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~-----------------~ 287 (450)
|..|++.|+|+.|+.+|.+ .+.+++++|+++|++|+..++.+..+ .+ ++++.|++++.. .
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I-~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI-VD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHH-HH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHH-Hh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999997 58899999999999998865544444 44 569999998721 1
Q ss_pred CCccchhHHHHHHHHhccCh-HHHHHHHhc-CCHHHHHHhcCC------CChhHHHHHHHHHHHhcCChhh---------
Q 041252 288 RHPNGILPGLSLLRSICLLN-EVRSLVVSI-GAVPQLVELLPS------LDPDCLQLALCILDALSSLPEG--------- 350 (450)
Q Consensus 288 ~~~~~~~~al~aL~~Ls~~~-~~~~~iv~~-G~v~~Lv~lL~~------~~~~~~~~al~~L~~L~~~~e~--------- 350 (450)
.++.++++|.++|+||+.+. ++|..+++. |++++|+.+|++ .+...++.|+++|+||+..-+.
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 13578889999999999765 569999985 667899999964 4678999999999999976221
Q ss_pred -----------------HHHHhccCCChHHHHHHHhc-CChHHHHHHHHHHHHhcccCch---hHHHHHHhcChHHHHHH
Q 041252 351 -----------------KLALKDCANTIPNTVRLLMR-VSEDCTQYALSILWSICKIAPE---ECSSAAVDAGLAAKLFL 409 (450)
Q Consensus 351 -----------------r~~i~~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~---~~~~~~~~~G~i~~L~~ 409 (450)
...+.. .++|+.|+.+|.. .++.++|+|+++|++||..... ..+..+.+.|+++.|+.
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~-~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQ-PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp ------------CCCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhcccccccccccCchhHHHHhc-ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 111112 3456778999964 5789999999999999876521 22223345789999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcCCCccc
Q 041252 410 VIQSGCNPVLKQRSAELLKLCSLNYTDTTFI 440 (450)
Q Consensus 410 ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~i 440 (450)
||.++ ++.+++.|..+|++|+.+..+...|
T Consensus 363 LL~s~-~~~v~~~A~~aL~nLs~~~~~~~~I 392 (584)
T 3l6x_A 363 LLTNE-HERVVKAASGALRNLAVDARNKELI 392 (584)
T ss_dssp GGGCS-CHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHcCC-CHHHHHHHHHHHHHHhCChhHHHHH
Confidence 99998 7889999999999999986655544
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=4.4e-29 Score=255.33 Aligned_cols=282 Identities=16% Similarity=0.132 Sum_probs=239.7
Q ss_pred hhcHHHHHHHhhcc------------chHHHHHHHHHHHHHHHHcHHHHHHHHhhCCh----------HHHHhhhCCCC-
Q 041252 148 QGRASELLGTLKKV------------KGQARVQALKELHQIAAAHASARKTMVDEGGV----------ALISSLLGPFT- 204 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~------------~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i----------~~Lv~lL~~~~- 204 (450)
.|.++.|++.|+.. +.+.+.+|+++|.+++..+++......+.|++ +.+++++.+..
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 47899999999863 25899999999999999998888888898988 66667776531
Q ss_pred Chh-----hHH-------HHHHHHHhcCCCchhhhhccCCCchHHHHHHhcC-----------CCHHHHHHHHHHHHHHh
Q 041252 205 SHA-----VGS-------EAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNE-----------GSVETKINCTRLIEKLM 261 (450)
Q Consensus 205 ~~~-----v~~-------~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~aa~~L~~La 261 (450)
+.+ +.+ .|+++|.|++.++++|..|.+.|++++|+.+|.. .+++++.+|+++|.+|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 112 333 8999999999999999999999999999999952 24778999999999999
Q ss_pred ccCCChhhHhh-hhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc--ChHHHHHHHhcCCHHHHHHh-cCCCChhHHHHH
Q 041252 262 EEKDFRPEIVS-SHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL--LNEVRSLVVSIGAVPQLVEL-LPSLDPDCLQLA 337 (450)
Q Consensus 262 ~~~~~~~~~~~-~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~--~~~~~~~iv~~G~v~~Lv~l-L~~~~~~~~~~a 337 (450)
..++..+..+. ..|+++.|+++|.++ +++++..|+++|+||+. ++++|..+++.|+|++|+++ +++++..+++.|
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A 307 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHH
Confidence 87765555554 567799999999976 68899999999999996 46799999999999999997 566788999999
Q ss_pred HHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCCh----HHHHHHHHHHHHhcc---cCchhHHHHHHhcChHHHHHH
Q 041252 338 LCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSE----DCTQYALSILWSICK---IAPEECSSAAVDAGLAAKLFL 409 (450)
Q Consensus 338 l~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~----~~~e~A~~~L~~L~~---~~~~~~~~~~~~~G~i~~L~~ 409 (450)
+.+|+||+. +++++..+....|+||.|+++|.+.++ .+++.|+++|++|+. .++ +.++.+++.|+++.|+.
T Consensus 308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~-~~~~~i~~~G~i~~Lv~ 386 (458)
T 3nmz_A 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE-DHRQILRENNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHcccHHHHHH
Confidence 999999998 789999998448999999999988764 489999999999997 344 45667789999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHh
Q 041252 410 VIQSGCNPVLKQRSAELLKLCSL 432 (450)
Q Consensus 410 ll~s~~~~~~k~~A~~lL~~ls~ 432 (450)
+|.++ +..+++.|+.+|.+++.
T Consensus 387 LL~~~-~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 387 HLKSH-SLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HSSCS-CHHHHHHHHHHHHHHHS
T ss_pred HHcCC-ChHHHHHHHHHHHHHHc
Confidence 99988 78899999999999884
No 6
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=2.1e-28 Score=255.92 Aligned_cols=291 Identities=18% Similarity=0.195 Sum_probs=236.4
Q ss_pred hhcHHHHHHHhhccchHHHHHHHHHHHHHHHH-cHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh
Q 041252 148 QGRASELLGTLKKVKGQARVQALKELHQIAAA-HASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK 226 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k 226 (450)
.|.|+.|+.+|++++.++|..|+.+|++++.. +++||..|++.|+||.|+.+|++..+.++++.|+++|++|+.++++|
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k 168 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence 37799999999999999999999999999984 68899999999999999999986446789999999999999999999
Q ss_pred hhccCCCchHHHHHHhc------------------CCCHHHHHHHHHHHHHHhccCCC-hhhHhhhhhHHHHHHHHHh--
Q 041252 227 TNLMQPAKVSLLVDMLN------------------EGSVETKINCTRLIEKLMEEKDF-RPEIVSSHRLLIGLMRLVK-- 285 (450)
Q Consensus 227 ~~i~~~g~i~~Lv~lL~------------------~~~~~~~~~aa~~L~~La~~~~~-~~~~~~~~g~l~~Lv~lL~-- 285 (450)
..|++ ++++.|+.+|. ..+.+++++|+++|++|+..++. +..+....|+++.|+.+|+
T Consensus 169 ~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~ 247 (584)
T 3l6x_A 169 MEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE 247 (584)
T ss_dssp HHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 99985 67999999872 23579999999999999876544 3333333455555555543
Q ss_pred -----------------------------------------------------------------------cCCCccchh
Q 041252 286 -----------------------------------------------------------------------NKRHPNGIL 294 (450)
Q Consensus 286 -----------------------------------------------------------------------~~~~~~~~~ 294 (450)
...++.+++
T Consensus 248 ~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E 327 (584)
T 3l6x_A 248 IGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327 (584)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred hcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHH
Confidence 222344566
Q ss_pred HHHHHHHHhccCh-----HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh
Q 041252 295 PGLSLLRSICLLN-----EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM 369 (450)
Q Consensus 295 ~al~aL~~Ls~~~-----~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~ 369 (450)
+|++||+|||... .++..+.+.|+++.|+++|.+++.++++.|+++|.||+..+.++..| + .|+||.||++|.
T Consensus 328 ~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~-~g~ip~LV~LL~ 405 (584)
T 3l6x_A 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-G-KHAIPNLVKNLP 405 (584)
T ss_dssp HHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-H-HHHHHHHHHTSS
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-H-hCCHHHHHHHhc
Confidence 7778888886432 34445556899999999999999999999999999999999899888 4 599999999998
Q ss_pred cC--------ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcC-CCHHHHHHHHHHHHHHHh--------
Q 041252 370 RV--------SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSG-CNPVLKQRSAELLKLCSL-------- 432 (450)
Q Consensus 370 ~~--------s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~-~~~~~k~~A~~lL~~ls~-------- 432 (450)
+. +..+...|+++|.||+..+++ .++.+.+.|+++.|+.++.++ .++.+++.|+.+|..+..
T Consensus 406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~-~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~ 484 (584)
T 3l6x_A 406 GGQQNSSWNFSEDTVISILNTINEVIAENLE-AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPL 484 (584)
T ss_dssp SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred CCcccccccchHHHHHHHHHHHHHHhcCCHH-HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHH
Confidence 76 467888999999999887764 466788999999999999875 468889999999988752
Q ss_pred ---hcCCCccccc
Q 041252 433 ---NYTDTTFISK 442 (450)
Q Consensus 433 ---~~~~~~~i~~ 442 (450)
.|+.+.|++.
T Consensus 485 kk~G~~~~~f~~~ 497 (584)
T 3l6x_A 485 EKEGWKKSDFQVN 497 (584)
T ss_dssp HTTTCCGGGGCCC
T ss_pred HHcCCCHHHhccc
Confidence 2666677654
No 7
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=1.1e-28 Score=245.00 Aligned_cols=245 Identities=17% Similarity=0.135 Sum_probs=213.6
Q ss_pred hhcHHHHHHHhhc-----------cchHHHHHHHHHHHHHHHHcHHHHHHHHhh-CChHHHHhhhCCCCChhhHHHHHHH
Q 041252 148 QGRASELLGTLKK-----------VKGQARVQALKELHQIAAAHASARKTMVDE-GGVALISSLLGPFTSHAVGSEAVGV 215 (450)
Q Consensus 148 ~~~i~~Lv~~L~~-----------~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~-G~i~~Lv~lL~~~~~~~v~~~Al~~ 215 (450)
.|.++.|+..|.. .+.+.|..|+.+|++++..+..+|..+... |+||.|+.+|++. +.++++.|+++
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~a 150 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASV 150 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC-CHHHHHHHHHH
Confidence 3678888888853 235689999999999998888899988765 5599999999875 78999999999
Q ss_pred HHhcCCC--chhhhhccCCCchHHHHHHh-cCCCHHHHHHHHHHHHHHhccC-CChhhHhhhhhHHHHHHHHHhcCCCc-
Q 041252 216 LVNLTLD--SESKTNLMQPAKVSLLVDML-NEGSVETKINCTRLIEKLMEEK-DFRPEIVSSHRLLIGLMRLVKNKRHP- 290 (450)
Q Consensus 216 L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~aa~~L~~La~~~-~~~~~~~~~~g~l~~Lv~lL~~~~~~- 290 (450)
|.||+.. +++|..+++.|+|+.|+++| ++++.++++.|+.+|++|+... +.+..++...|+++.|+++|.++.+.
T Consensus 151 L~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~ 230 (354)
T 3nmw_A 151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 230 (354)
T ss_dssp HHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred HHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcc
Confidence 9999974 57899999999999999975 5678999999999999998744 33444444789999999999875322
Q ss_pred --cchhHHHHHHHHhcc----ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc-CChhhHHHHhccCCChHH
Q 041252 291 --NGILPGLSLLRSICL----LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS-SLPEGKLALKDCANTIPN 363 (450)
Q Consensus 291 --~~~~~al~aL~~Ls~----~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~-~~~e~r~~i~~~~g~i~~ 363 (450)
++++.++++|+||+. +++++..+++.|+++.|+++|.+++..+++.|+++|.||+ .+++++..+.+ .|+||.
T Consensus 231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~-~G~i~~ 309 (354)
T 3nmw_A 231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD-MGAVSM 309 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTHHHH
T ss_pred cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHH-CCCHHH
Confidence 378999999999995 8899999999999999999999999999999999999999 56999999998 899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcccCchhH
Q 041252 364 TVRLLMRVSEDCTQYALSILWSICKIAPEEC 394 (450)
Q Consensus 364 Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~ 394 (450)
|+++|.+.++.+++.|+.+|++|+...++..
T Consensus 310 Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 310 LKNLIHSKHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999887654
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=3.8e-28 Score=250.20 Aligned_cols=281 Identities=17% Similarity=0.226 Sum_probs=231.8
Q ss_pred hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhh
Q 041252 148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT 227 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~ 227 (450)
.|.++.|+..|++++.+.+..|+.+|++++..++++|..+++.|+||.|+++|+...+.++++.|+++|.||+.++++|.
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~ 122 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence 47799999999999999999999999999987789999999999999999999833478999999999999999999999
Q ss_pred hccCCCchHHHHHHh--------cCC--------CHHHHHHHHHHHHHHhccCCChhhHhhhh-hHHHHHHHHHhcC---
Q 041252 228 NLMQPAKVSLLVDML--------NEG--------SVETKINCTRLIEKLMEEKDFRPEIVSSH-RLLIGLMRLVKNK--- 287 (450)
Q Consensus 228 ~i~~~g~i~~Lv~lL--------~~~--------~~~~~~~aa~~L~~La~~~~~~~~~~~~~-g~l~~Lv~lL~~~--- 287 (450)
.+++ |+++.|+.+| .++ +.+++.+|+++|++|+..+ ..+..+.+. |+++.|+.+|+++
T Consensus 123 ~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~ 200 (457)
T 1xm9_A 123 ELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD-AGRQTMRNYSGLIDSLMAYVQNCVAA 200 (457)
T ss_dssp HHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSH-HHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCH-HHHHHHHHcCCCHHHHHHHHHhhccc
Confidence 9999 9999999999 322 3556669999999998764 455556665 8899999888641
Q ss_pred --------------------------------------------------------------------------------
Q 041252 288 -------------------------------------------------------------------------------- 287 (450)
Q Consensus 288 -------------------------------------------------------------------------------- 287 (450)
T Consensus 201 ~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (457)
T 1xm9_A 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY 280 (457)
T ss_dssp TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG
T ss_pred cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence
Q ss_pred ---------------CCccchhHHHHHHHHhccCh-----HH-HHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252 288 ---------------RHPNGILPGLSLLRSICLLN-----EV-RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS 346 (450)
Q Consensus 288 ---------------~~~~~~~~al~aL~~Ls~~~-----~~-~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~ 346 (450)
.++.+++.|+++|+||+... .. +..+.+.|++|.|+++|.+++.+++..|+++|.+|+.
T Consensus 281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence 01233445788999998532 12 3334468999999999999999999999999999999
Q ss_pred ChhhHHHHhccCCChHHHHHHHhcCC------hHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHH
Q 041252 347 LPEGKLALKDCANTIPNTVRLLMRVS------EDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLK 420 (450)
Q Consensus 347 ~~e~r~~i~~~~g~i~~Lv~lL~~~s------~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k 420 (450)
+++++..+.. |+|++|+++|...+ +++...++.+|.++...+++ ....+.+.|++++|+.++.++.++.++
T Consensus 361 ~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~-~~~~i~~~g~l~~L~~L~~~~~~~~i~ 437 (457)
T 1xm9_A 361 HPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ-LAKQYFSSSMLNNIINLCRSSASPKAA 437 (457)
T ss_dssp SGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH-HHHHHCCHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHcCCHHHHHHHHcCCCcHHHH
Confidence 9989888865 79999999998864 35778899999999887764 456677899999999999987567899
Q ss_pred HHHHHHHHHHHhh
Q 041252 421 QRSAELLKLCSLN 433 (450)
Q Consensus 421 ~~A~~lL~~ls~~ 433 (450)
++|..+|..+-.+
T Consensus 438 ~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 438 EAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHcc
Confidence 9999999865443
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=7.4e-28 Score=259.68 Aligned_cols=283 Identities=14% Similarity=0.112 Sum_probs=244.4
Q ss_pred hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcH-----------------------------HHH---HHHHhhCChHH
Q 041252 148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHA-----------------------------SAR---KTMVDEGGVAL 195 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-----------------------------~~r---~~i~~~G~i~~ 195 (450)
.+.++.|+.+|++.+...+..|+..|.+++...+ .++ +.++++|++|.
T Consensus 420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~ 499 (810)
T 3now_A 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499 (810)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence 3678999999999888899999999999997431 234 78899999999
Q ss_pred HHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh--hh
Q 041252 196 ISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV--SS 273 (450)
Q Consensus 196 Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~--~~ 273 (450)
|+.+|++. +..++++|+++|.|++.++++|..+++.|++++|+.+|.+++...+++|+++|.+|+.+.+....+. ..
T Consensus 500 LV~LL~s~-s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 500 LCALAKTE-SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHHTCC-CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 99999885 7899999999999999999999999999999999999999999999999999999986543222111 13
Q ss_pred hhHHHHHHHHHhcCCCccchhHHHHHHHHhccC-hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHH
Q 041252 274 HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL-NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKL 352 (450)
Q Consensus 274 ~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~-~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~ 352 (450)
.|++++|+.+|.++.+...+..|+++|.||+.. ++++..+++.|+++.|+++|.+.++.+++.|+.+|.||+.+++.+.
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 578999999998542223345899999999965 6889999999999999999999999999999999999999999999
Q ss_pred HHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHh-cChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252 353 ALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVD-AGLAAKLFLVIQSGCNPVLKQRSAELLKLCS 431 (450)
Q Consensus 353 ~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~-~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls 431 (450)
.+.+..|+++.|+.++...+..+++.|+++|++++..++. ..+.+++ .|+++.|+.++.++ +..+++.|.+.+.++.
T Consensus 659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~-~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVK-CCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHH-HHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHH-HHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 9885468999999999999999999999999999986653 3456777 89999999999998 7889999999888876
Q ss_pred hh
Q 041252 432 LN 433 (450)
Q Consensus 432 ~~ 433 (450)
..
T Consensus 737 ~~ 738 (810)
T 3now_A 737 NA 738 (810)
T ss_dssp TT
T ss_pred hC
Confidence 54
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.96 E-value=4.4e-27 Score=245.57 Aligned_cols=281 Identities=20% Similarity=0.204 Sum_probs=246.4
Q ss_pred hhcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chh
Q 041252 148 QGRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SES 225 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~ 225 (450)
.|.++.|+..|++. +.+.|..|+++|.+++..++++++.+++.|+||.|+.+|++. +.++++.|+++|.||+.+ +++
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHH
Confidence 47899999999764 578999999999999998999999999999999999999886 789999999999999986 477
Q ss_pred hhhccCCCchHHHHHHhcCCC-----HHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHH
Q 041252 226 KTNLMQPAKVSLLVDMLNEGS-----VETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL 300 (450)
Q Consensus 226 k~~i~~~g~i~~Lv~lL~~~~-----~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL 300 (450)
|..+.+.|+++.|+.+|.+.+ ...+.+++++|.+++........+....++++.|++++.++ ++.++..++++|
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~A~~aL 256 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAI 256 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 888999999999999998653 45788999999999877665555566678999999999986 688999999999
Q ss_pred HHhccChH-HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHH
Q 041252 301 RSICLLNE-VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQY 378 (450)
Q Consensus 301 ~~Ls~~~~-~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~ 378 (450)
.+|+.+.. ....+++.|+++.|+++|.+.+..++..++.+|.+++.. ++.+..+.+ .|+++.|+.+|.+.+..+++.
T Consensus 257 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~v~~~ 335 (510)
T 3ul1_B 257 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKE 335 (510)
T ss_dssp HHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGCC-CTTCSSHHHHHH
T ss_pred HHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh-ccchHHHHHHhcCCCHHHHHH
Confidence 99997655 455666899999999999999999999999999999865 667777887 899999999999999999999
Q ss_pred HHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 379 ALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 379 A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
|+++|.+++..++ .....+.+.|+++.|+.++.++ +..+|+.|+.+|.++..+
T Consensus 336 A~~aL~nl~a~~~-~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 336 ATWTMSNITAGRQ-DQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcH-HHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcc
Confidence 9999999998876 4456778899999999999998 788999999999988765
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=1.5e-26 Score=242.46 Aligned_cols=281 Identities=20% Similarity=0.193 Sum_probs=246.9
Q ss_pred hhcHHHHHHHhhc-cchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chh
Q 041252 148 QGRASELLGTLKK-VKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SES 225 (450)
Q Consensus 148 ~~~i~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~ 225 (450)
.|.++.|+..|+. .+.+.+..|+++|.+++..+++++..+++.|+||.|+.+|.+. +..+++.|+++|.||+.+ +++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~-~~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-HAHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhccCHHH
Confidence 4789999999975 4578999999999999998889999999999999999999886 789999999999999875 578
Q ss_pred hhhccCCCchHHHHHHhcCCC-----HHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHH
Q 041252 226 KTNLMQPAKVSLLVDMLNEGS-----VETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL 300 (450)
Q Consensus 226 k~~i~~~g~i~~Lv~lL~~~~-----~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL 300 (450)
+..+.+.|++++|+.+|...+ ...+.+++++|.+++........+....++++.|++++.++ ++.++..++++|
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~a~~aL 275 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAI 275 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-cHHHHHHHHHHH
Confidence 889999999999999997543 45788999999999877655555556678999999999986 688999999999
Q ss_pred HHhccChH-HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHH
Q 041252 301 RSICLLNE-VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQY 378 (450)
Q Consensus 301 ~~Ls~~~~-~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~ 378 (450)
.+|+.+.. ....+++.|+++.|+++|.+.+..++..|+.+|.+++.. ++.+..+.+ .|+++.|+++|.+.++.+++.
T Consensus 276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNPKTNIQKE 354 (529)
T ss_dssp HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCSSHHHHHH
T ss_pred HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh-cccHHHHHHHHcCCCHHHHHH
Confidence 99996554 556677899999999999999999999999999999865 677778888 899999999999999999999
Q ss_pred HHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 379 ALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 379 A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
|+++|.+++..++ .....+++.|+++.|+.++.++ +..+++.|+++|.++..+
T Consensus 355 a~~aL~nl~~~~~-~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 355 ATWTMSNITAGRQ-DQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccH-HHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcC
Confidence 9999999999876 4456677899999999999998 788899999999888765
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=5.8e-27 Score=252.76 Aligned_cols=281 Identities=11% Similarity=0.081 Sum_probs=244.5
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
|.++.|+.+|+++++.+|..|+++|.+++. ++++|..+++.|++|+|+.+|.+. +...++.|+++|.+|+.+.+....
T Consensus 495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 495 GITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp THHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhh
Confidence 678999999999999999999999999985 677999999999999999999875 678899999999998865433332
Q ss_pred cc---CCCchHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252 229 LM---QPAKVSLLVDMLNEG-SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC 304 (450)
Q Consensus 229 i~---~~g~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls 304 (450)
+. ..|++++|+.+|.++ +...+..|+++|.+|+..++.....+.+.|+++.|+.++.++ ++.++++|+++|.||+
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLV 651 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence 21 146999999999876 555667899999999987665565667789999999999986 6889999999999999
Q ss_pred cChHHHHHHHh-cCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHH
Q 041252 305 LLNEVRSLVVS-IGAVPQLVELLPSLDPDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSI 382 (450)
Q Consensus 305 ~~~~~~~~iv~-~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~ 382 (450)
.+++.+..+++ .|+++.|+.++.+.+.++++.|+++|.+|+. ++.....+.+++|+|+.|++++.+.+..+++.|+.+
T Consensus 652 ~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a 731 (810)
T 3now_A 652 MSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731 (810)
T ss_dssp TSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999999996 7999999999999999999999999999998 688888888757999999999999999999999999
Q ss_pred HHHhcccCchhHHHHHHhcChHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhh
Q 041252 383 LWSICKIAPEECSSAAVDAGLAAKLFLVIQSG--CNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 383 L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~--~~~~~k~~A~~lL~~ls~~ 433 (450)
|.|++..++ +.+..+++.|++++|+.+++.. .+..+.+.|...|+.+-..
T Consensus 732 L~NL~~~s~-e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 732 ILNMINAGE-EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHTTCH-HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCH-HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 999998665 5567888999999999998654 3678999999999987665
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=2.7e-26 Score=240.62 Aligned_cols=282 Identities=16% Similarity=0.160 Sum_probs=247.4
Q ss_pred hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCC----ChhhHHHHHHHHHhcCCCc
Q 041252 148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFT----SHAVGSEAVGVLVNLTLDS 223 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~----~~~v~~~Al~~L~~Ls~~~ 223 (450)
.|.++.|+.+|.+.+.+++..|+++|.+++.+++.+|..+.+.|++++|+.+|.... .......++++|.+++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 477999999999999999999999999999999999999999999999999997642 2246788999999998876
Q ss_pred hhhhhcc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHH
Q 041252 224 ESKTNLM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRS 302 (450)
Q Consensus 224 ~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~ 302 (450)
.....+. ..++++.|+.+|.+++++++..|+++|.+|+..++.+...+...|+++.|+.+|.+. ++.++..++++|.|
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~n 319 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGN 319 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHHHHHHHHH
Confidence 5554443 478999999999999999999999999999987777777778889999999999986 68889999999999
Q ss_pred hcc-ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHH
Q 041252 303 ICL-LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYAL 380 (450)
Q Consensus 303 Ls~-~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~ 380 (450)
|+. ++..+..+++.|+++.|+.+|.++++.+++.|+++|.||+.. ++.+..+.+ .|++|.|+.++.+.+..+++.|+
T Consensus 320 l~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~A~ 398 (529)
T 3tpo_A 320 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFKTQKAAA 398 (529)
T ss_dssp HTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHh-cCcHHHHHHHhcCCCHHHHHHHH
Confidence 984 567888899999999999999999999999999999999975 666777777 89999999999999999999999
Q ss_pred HHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252 381 SILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL 432 (450)
Q Consensus 381 ~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~ 432 (450)
++|.+++.....+....+++.|++++|+.+|.+. ++.+...+...|.++-.
T Consensus 399 ~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 399 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 9999999876555556788999999999999987 78888888887777543
No 14
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=3.7e-26 Score=215.54 Aligned_cols=237 Identities=21% Similarity=0.241 Sum_probs=215.4
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-Cchhhh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DSESKT 227 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~~~k~ 227 (450)
...+.++..|++.+.+.+..|+..|+++...+..++..+.+.|+++.|+.+|++. +..++..|+++|.+++. +++++.
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4578899999999999999999999887766788999999999999999999886 68999999999999997 678899
Q ss_pred hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-C
Q 041252 228 NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-L 306 (450)
Q Consensus 228 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~ 306 (450)
.+.+.|+++.|+.+|++++++++..|+++|.+|+..++.+...+...|+++.|+++|.++ ++.++..++++|.+|+. .
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999887766546677889999999999886 68899999999999996 5
Q ss_pred hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHH
Q 041252 307 NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWS 385 (450)
Q Consensus 307 ~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~ 385 (450)
++++..+++.|+++.|+++|.++++.+++.|+++|.+|+. +++.+..+.+ .|+++.|++++.+.++.+++.|+.+|.+
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 6778888899999999999999999999999999999995 5778888888 8999999999999999999999999999
Q ss_pred hcc
Q 041252 386 ICK 388 (450)
Q Consensus 386 L~~ 388 (450)
|+.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=3.4e-26 Score=238.82 Aligned_cols=282 Identities=16% Similarity=0.153 Sum_probs=246.4
Q ss_pred hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCC----ChhhHHHHHHHHHhcCCCc
Q 041252 148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFT----SHAVGSEAVGVLVNLTLDS 223 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~----~~~v~~~Al~~L~~Ls~~~ 223 (450)
.|.++.|+..|++++.+++..|+++|.+++.+++.+|..+.+.|++++|+.+|.... .......++++|.+++.+.
T Consensus 142 ~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 221 (510)
T 3ul1_B 142 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221 (510)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 377999999999999999999999999999988999999999999999999997642 1246778999999998876
Q ss_pred hhhhhcc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHH
Q 041252 224 ESKTNLM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRS 302 (450)
Q Consensus 224 ~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~ 302 (450)
.....+. ..++++.|+.+|.+++.+++..|+++|.+|+..++.+...+...|+++.|+.+|.+. +..++..++++|.|
T Consensus 222 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~n 300 (510)
T 3ul1_B 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGN 300 (510)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHHHHHH
Confidence 5554443 478899999999999999999999999999987776777778889999999999986 68899999999999
Q ss_pred hc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHH
Q 041252 303 IC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYAL 380 (450)
Q Consensus 303 Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~ 380 (450)
|+ .++.++..+++.|+++.|+.+|.+.+..+++.|+++|.||+.. ++.+..+.+ .|++|.|++++.+.+..+++.|+
T Consensus 301 l~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~Aa 379 (510)
T 3ul1_B 301 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFKTQKEAA 379 (510)
T ss_dssp HTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHH
T ss_pred hhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHH
Confidence 98 4567788899999999999999999999999999999999865 667777777 89999999999999999999999
Q ss_pred HHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252 381 SILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL 432 (450)
Q Consensus 381 ~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~ 432 (450)
++|.+++.....+....+++.|+++.|+.+|.+. ++.+...+...|.++-.
T Consensus 380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 9999999876555566778999999999999987 78888888887776543
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=6.3e-26 Score=213.00 Aligned_cols=240 Identities=23% Similarity=0.261 Sum_probs=219.8
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chhhhh
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SESKTN 228 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k~~ 228 (450)
.++.|+..|++.+.+.+..|+..|.+++..+++++..+.+.|+++.|+.+|.+. +..++..|+++|.+++.+ ++++..
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHH
Confidence 478899999998899999999999999998888999999999999999999886 689999999999999987 788999
Q ss_pred ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-Ch
Q 041252 229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-LN 307 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~~ 307 (450)
+.+.|+++.|+.+|.+++.+++..|+++|.+|+..++.....+...|+++.|+++++++ ++.++..++++|.+|+. ++
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999966666666677789999999999986 68899999999999996 56
Q ss_pred HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 041252 308 EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI 386 (450)
Q Consensus 308 ~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L 386 (450)
.++..+++.|+++.|+.+|.+.++.++..|+++|.+|+. .++.+..+.+ .|+++.|++++.+.++.+++.|+.+|.++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 667889999999999999999999999999999999997 4777888888 89999999999999999999999999999
Q ss_pred cccCch
Q 041252 387 CKIAPE 392 (450)
Q Consensus 387 ~~~~~~ 392 (450)
+...+.
T Consensus 240 ~~~~~~ 245 (252)
T 4hxt_A 240 KSGGWL 245 (252)
T ss_dssp HHTCBC
T ss_pred HcCCCc
Confidence 987653
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=3.7e-25 Score=207.75 Aligned_cols=241 Identities=20% Similarity=0.185 Sum_probs=217.4
Q ss_pred CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhh
Q 041252 191 GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPE 269 (450)
Q Consensus 191 G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~ 269 (450)
|+++.|+.+|.+. +.+++..|+.+|.+++..+ +++..+++.|+++.|+.+|.+++.+++..|+++|.+|+..++....
T Consensus 2 ~~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 6799999999886 6889999999999988765 5888999999999999999999999999999999999987666667
Q ss_pred HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-
Q 041252 270 IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL- 347 (450)
Q Consensus 270 ~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~- 347 (450)
.+...|+++.|+.+++++ ++.++..++++|.+|+ .+++++..+++.|+++.|+++|.+.++.++..|+++|.+|+..
T Consensus 81 ~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 777889999999999986 6889999999999999 6788999999999999999999999999999999999999975
Q ss_pred hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHH
Q 041252 348 PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELL 427 (450)
Q Consensus 348 ~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL 427 (450)
++.+..+.+ .|+++.|++++.+.++.+++.|+.+|.+++..++ .....+.+.|+++.|+.+++++ ++.+++.|..+|
T Consensus 160 ~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L 236 (252)
T 4hxt_A 160 DEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPT-SAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRAL 236 (252)
T ss_dssp HHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH-HHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 666677887 8999999999999999999999999999998665 4456778999999999999987 789999999999
Q ss_pred HHHHhhcCC
Q 041252 428 KLCSLNYTD 436 (450)
Q Consensus 428 ~~ls~~~~~ 436 (450)
.++..+...
T Consensus 237 ~~l~~~~~~ 245 (252)
T 4hxt_A 237 ENIKSGGWL 245 (252)
T ss_dssp HHHHHTCBC
T ss_pred HHHHcCCCc
Confidence 999988543
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.94 E-value=2.6e-25 Score=232.61 Aligned_cols=282 Identities=16% Similarity=0.182 Sum_probs=246.2
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcH-HHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chhhh
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHA-SARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SESKT 227 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~-~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k~ 227 (450)
.++.++..|.+.+.+.+..|+..|++++..+. .++..+.+.|++|.|+.+|.+..+..++..|+++|.+++.+ ++++.
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 48899999999889999999999999976543 57888999999999999998764478999999999999886 68888
Q ss_pred hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252 228 NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN 307 (450)
Q Consensus 228 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~ 307 (450)
.+++.|+++.|+.+|.+++.++++.|+++|.+|+.+++.....+...|+++.|+.+|....++.++..++++|.+|+...
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999987766666667778999999999954447888999999999999765
Q ss_pred HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhH-HHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 041252 308 EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGK-LALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI 386 (450)
Q Consensus 308 ~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r-~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L 386 (450)
.........|+++.|+.+|.+.+..++..|+++|.+|+..+..+ ..+.+ .|+++.|+++|.+.++.+++.|+.+|.++
T Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 44445556899999999999999999999999999999875554 56666 89999999999999999999999999999
Q ss_pred cccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 387 CKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 387 ~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
+..++ .....+++.|+++.|+.++.++.++.+++.|..+|.+++..
T Consensus 314 ~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 314 VTGDD-AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp TTSCH-HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HcCCH-HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 98775 44566778999999999999875788999999999998764
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.94 E-value=1.4e-24 Score=227.15 Aligned_cols=280 Identities=20% Similarity=0.221 Sum_probs=246.5
Q ss_pred hhcHHHHHHHhhccc-hHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chh
Q 041252 148 QGRASELLGTLKKVK-GQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SES 225 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~~-~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~ 225 (450)
.+.++.|+..|++.+ ..++..|+++|.+++..+++++..+++.|+++.|+.+|.+. +..+++.|+++|.+|+.+ +.+
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhh
Confidence 367999999999876 88999999999999988889999999999999999999885 789999999999999876 467
Q ss_pred hhhccCCCchHHHHHHh-cCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252 226 KTNLMQPAKVSLLVDML-NEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC 304 (450)
Q Consensus 226 k~~i~~~g~i~~Lv~lL-~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls 304 (450)
+..+.+.|+++.|+.+| .+.+..++..|+++|.+|+...+.... ....++++.|+.+|.+. ++.++..++++|.+|+
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSF-EQTRPALPALARLIHSN-DEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCH-HHHTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 88888999999999999 567999999999999999876533332 34578999999999886 6889999999999999
Q ss_pred cChHH-HHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcC-ChHHHHHHHH
Q 041252 305 LLNEV-RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRV-SEDCTQYALS 381 (450)
Q Consensus 305 ~~~~~-~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e~A~~ 381 (450)
..... ...+++.|+++.|+.+|.+.++.++..|+.+|.+|+.. +..+..+.+ .|+++.|+++|.+. ++.+++.|++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~ 351 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACW 351 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHH
Confidence 76554 46777899999999999999999999999999999975 667777887 89999999999998 8999999999
Q ss_pred HHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 382 ILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 382 ~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
+|.+++..++ .....+++.|+++.|+.++.++ ++.+++.|..+|..+..+
T Consensus 352 ~L~nl~~~~~-~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 352 TISNITAGNK-DQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHTSCH-HHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCH-HHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence 9999998664 4455677889999999999998 789999999999998876
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.93 E-value=4.9e-24 Score=223.23 Aligned_cols=281 Identities=19% Similarity=0.167 Sum_probs=247.2
Q ss_pred hhcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chh
Q 041252 148 QGRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SES 225 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~ 225 (450)
.+.++.|+..|++. +..+|..|++.|.+++..+++++..+++.|+++.|+.+|.+. +..+++.|+++|.+++.+ +++
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccc
Confidence 36789999999886 788999999999999988888999999999999999999875 789999999999999876 578
Q ss_pred hhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252 226 KTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL 305 (450)
Q Consensus 226 k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~ 305 (450)
+..+...|+++.|+.+|.+.+.+++..|+++|.+|+.............++++.|+.++.++ ++.++..++++|.+|+.
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 88888899999999999999999999999999999876522223345578999999999886 68889999999999995
Q ss_pred C-hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252 306 L-NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL 383 (450)
Q Consensus 306 ~-~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L 383 (450)
. ++.+..+++.|+++.|+.+|.+.+..++..|+.+|.+++.. ++....+.+ .|+++.|+.+|.+.+..+++.|+.+|
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~vr~~A~~aL 365 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIKKEACWTI 365 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4 56778888999999999999999999999999999999965 666777777 79999999999999999999999999
Q ss_pred HHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 384 WSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 384 ~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
.+++..+++ ..+.+++.|+++.|+.++.++ ++.+++.|..+|..+...
T Consensus 366 ~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 366 SNITAGNTE-QIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHTTSCHH-HHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHH-HHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Confidence 999987753 345667899999999999887 789999999999998776
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.93 E-value=1e-23 Score=215.02 Aligned_cols=282 Identities=15% Similarity=0.102 Sum_probs=243.4
Q ss_pred hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc--hh
Q 041252 148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS--ES 225 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~--~~ 225 (450)
.+.++.|+..|++.+.++|..|+..|.+++..++.+|..+.+.|+++.|+.+|.+..+..++..|+++|.+++.+. ..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 3678899999999889999999999999999888899999999999999999986447899999999999998754 33
Q ss_pred hhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252 226 KTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL 305 (450)
Q Consensus 226 k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~ 305 (450)
+..+. .++++.|+.+|.+++.+++..++++|.+|+...+.....+...|+++.|+.++.++ ++.++..++++|.+|+.
T Consensus 186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN-DYKVVSPALRAVGNIVT 263 (450)
T ss_dssp CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC-chhHHHHHHHHHHHHhh
Confidence 33333 89999999999999999999999999999876544555566778999999999875 68899999999999996
Q ss_pred C-hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252 306 L-NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL 383 (450)
Q Consensus 306 ~-~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L 383 (450)
. +..+..+++.|+++.|+.+|.+.++.++..|+++|.+++. +++....+.+ .|+++.|+++|.+.++.+++.|+.+|
T Consensus 264 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L 342 (450)
T 2jdq_A 264 GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID-ANIFPALISILQTAEFRTRKEAAWAI 342 (450)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5 4456667889999999999999999999999999999996 5777778887 79999999999999999999999999
Q ss_pred HHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 384 WSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 384 ~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
.+++.....+..+.+++.|+++.|+.++.++ ++.+++.|...|..+...
T Consensus 343 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 343 TNATSGGSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 9999863334455567889999999999987 788999999988877665
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.93 E-value=2.4e-24 Score=224.49 Aligned_cols=282 Identities=17% Similarity=0.168 Sum_probs=240.4
Q ss_pred hcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chhh
Q 041252 149 GRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SESK 226 (450)
Q Consensus 149 ~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k 226 (450)
+.++.|+..|+++ +.+.+..|+..|++++.. ++++..+.+.|+++.|+.+|++. +..++..|+++|.+++.+ ++.+
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchH
Confidence 6788999999765 778999999999999865 55999999999999999999886 688999999999999876 4667
Q ss_pred hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL 306 (450)
Q Consensus 227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~ 306 (450)
..+.+.|+++.|+.+|.+++.+++..++.+|.+|+..++..+..+...|+++.|++++++.........+..+|++|+.+
T Consensus 137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 78889999999999999999999999999999998876666666777799999999999875455667889999999999
Q ss_pred hHHHHHHHhcCCHHHHHHhcCC---------------------------------------CChhHHHHHHHHHHHhcCC
Q 041252 307 NEVRSLVVSIGAVPQLVELLPS---------------------------------------LDPDCLQLALCILDALSSL 347 (450)
Q Consensus 307 ~~~~~~iv~~G~v~~Lv~lL~~---------------------------------------~~~~~~~~al~~L~~L~~~ 347 (450)
++++..+++.|+++.|+.++.+ .++++++.|+++|.+|+..
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999988777766644 4567777888888888765
Q ss_pred -hhhHHHHhccCCChHHHHHHHhcCC--hHHHHHHHHHHHHhcccCchh--HHHHHHhcChHHHHHHHHHcCCCHHHHHH
Q 041252 348 -PEGKLALKDCANTIPNTVRLLMRVS--EDCTQYALSILWSICKIAPEE--CSSAAVDAGLAAKLFLVIQSGCNPVLKQR 422 (450)
Q Consensus 348 -~e~r~~i~~~~g~i~~Lv~lL~~~s--~~~~e~A~~~L~~L~~~~~~~--~~~~~~~~G~i~~L~~ll~s~~~~~~k~~ 422 (450)
++++..+.+ .|+++.|+++|.+.+ +.+++.|+.+|++++..+++. .+..+.+.|+++.|+.+++++..+.+++.
T Consensus 297 ~~~~~~~~~~-~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~ 375 (529)
T 1jdh_A 297 NYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375 (529)
T ss_dssp CHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred CHHHHHHHHH-cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHH
Confidence 578888888 899999999998743 689999999999999876532 45567789999999999998855688999
Q ss_pred HHHHHHHHHhh
Q 041252 423 SAELLKLCSLN 433 (450)
Q Consensus 423 A~~lL~~ls~~ 433 (450)
|.++|.+++.+
T Consensus 376 a~~~l~nl~~~ 386 (529)
T 1jdh_A 376 TVGLIRNLALC 386 (529)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHhcC
Confidence 99999998865
No 23
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=8.7e-25 Score=206.08 Aligned_cols=237 Identities=22% Similarity=0.210 Sum_probs=211.2
Q ss_pred CChHHHHhhhCCCCChhhHHHHHHHHHh-cCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhh
Q 041252 191 GGVALISSLLGPFTSHAVGSEAVGVLVN-LTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPE 269 (450)
Q Consensus 191 G~i~~Lv~lL~~~~~~~v~~~Al~~L~~-Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~ 269 (450)
...+.++..|.+. +.+++..|+.+|.+ ++.+++++..+++.|+++.|+.+|.+++++++..|+++|.+|+..++....
T Consensus 12 ~~~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3478899999886 78999999999976 555678888999999999999999999999999999999999986666667
Q ss_pred HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHH-HHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-
Q 041252 270 IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR-SLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL- 347 (450)
Q Consensus 270 ~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~-~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~- 347 (450)
.+...|+++.|+.+|+++ ++.++..++++|.+|+.+++++ ..+++.|+++.|+.+|.+++..+++.|+++|.+|+..
T Consensus 91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 778889999999999986 6889999999999999988888 8899999999999999999999999999999999975
Q ss_pred hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHH
Q 041252 348 PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELL 427 (450)
Q Consensus 348 ~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL 427 (450)
++.+..+.+ .|+++.|+++|.+.++.+++.|+.+|.+++..++ +....+.+.|+++.|+.+++++ ++.+++.|..+|
T Consensus 170 ~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L 246 (252)
T 4db8_A 170 NEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEAL 246 (252)
T ss_dssp HHHHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHH
T ss_pred hHHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 677777887 8999999999999999999999999999998765 4456778999999999999987 778999999999
Q ss_pred HHHHh
Q 041252 428 KLCSL 432 (450)
Q Consensus 428 ~~ls~ 432 (450)
.++..
T Consensus 247 ~~l~~ 251 (252)
T 4db8_A 247 EKLQS 251 (252)
T ss_dssp HTTC-
T ss_pred HHHhc
Confidence 88754
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.93 E-value=2.7e-23 Score=211.93 Aligned_cols=279 Identities=16% Similarity=0.142 Sum_probs=242.5
Q ss_pred hcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhh
Q 041252 149 GRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESK 226 (450)
Q Consensus 149 ~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k 226 (450)
+.++.|+..|++. +...|..|+..|.+++..+++++..+.+.|+++.|+.+|++. +..+++.|+++|.+++.+. +++
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~~~~~ 142 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDSTMCR 142 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCCHHHH
Confidence 6788999999987 788999999999999987777888889999999999999885 7899999999999998865 678
Q ss_pred hhccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhccC-CChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252 227 TNLMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEK-DFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC 304 (450)
Q Consensus 227 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~-~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls 304 (450)
..+.+.|+++.|+.+|.+ .+.+++..|+++|.+|+... ....... ..++++.|+.++.++ ++.++..++++|.+|+
T Consensus 143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVS-DTDVLADACWALSYLS 220 (450)
T ss_dssp HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 888899999999999996 68999999999999998654 3222222 278899999999876 6788999999999999
Q ss_pred cC-hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHH
Q 041252 305 LL-NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSI 382 (450)
Q Consensus 305 ~~-~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~ 382 (450)
.+ ++++..+++.|+++.|+.+|.+.+..+++.|+.+|.+|+.. ++.+..+.+ .|+++.|+++|.+.++.+++.|+.+
T Consensus 221 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 221 DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp SSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCCCHHHHHHHHHH
Confidence 64 56778888999999999999999999999999999999977 455566777 7999999999999889999999999
Q ss_pred HHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 383 LWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 383 L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
|.+++..++ ...+.+++.|+++.|+.++.++ ++.+|+.|..+|..+...
T Consensus 300 L~~l~~~~~-~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 300 ISNITAGNR-AQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHTTSCH-HHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence 999998765 3345677889999999999987 788999999999988765
No 25
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.92 E-value=6.1e-25 Score=204.55 Aligned_cols=196 Identities=18% Similarity=0.184 Sum_probs=173.5
Q ss_pred ChHHHHhhhCCCCCh--hhHHHHHHHHHhcCC-CchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChh
Q 041252 192 GVALISSLLGPFTSH--AVGSEAVGVLVNLTL-DSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRP 268 (450)
Q Consensus 192 ~i~~Lv~lL~~~~~~--~v~~~Al~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~ 268 (450)
.+|.++.+|.+. +. .++..|+++|.+|+. ++++|..+.+.|+|++||.+|++++.++++.|+++|++|+..++.++
T Consensus 9 ~i~~lV~lL~s~-~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEAD-HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCC-CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 489999999876 55 788899999999985 67899999999999999999999999999999999999998766777
Q ss_pred hHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcC----------------CCChh
Q 041252 269 EIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLP----------------SLDPD 332 (450)
Q Consensus 269 ~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~----------------~~~~~ 332 (450)
..+.+.|+++.|+++|++..+..+++.++.+||||+.++++|..+++. ++++|++++. ..+.+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 788889999999999986446889999999999999999999999975 6999999873 12568
Q ss_pred HHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcC------ChHHHHHHHHHHHHhccc
Q 041252 333 CLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRV------SEDCTQYALSILWSICKI 389 (450)
Q Consensus 333 ~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~------s~~~~e~A~~~L~~L~~~ 389 (450)
++++|..+|+||+. ++++|..++++.|+|+.||.++... +.+.+|+|+.+|+||+.+
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999987 4799999998678899999999863 468999999999999875
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=1.9e-23 Score=218.70 Aligned_cols=282 Identities=17% Similarity=0.126 Sum_probs=245.8
Q ss_pred hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhh
Q 041252 148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESK 226 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k 226 (450)
.+.++.|+..|++.+.+++..|+++|.+++..++.++..+.+.|+++.|+.+|.+. +..++..|+++|.+|+.+. ...
T Consensus 172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~ 250 (530)
T 1wa5_B 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQP 250 (530)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhCCCCCCC
Confidence 36788999999998899999999999999988888999999999999999999874 7889999999999999765 455
Q ss_pred hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-
Q 041252 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL- 305 (450)
Q Consensus 227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~- 305 (450)
......++++.|+.+|.+++.+++..|+++|.+|+...+.....+...|+++.|+.+|.+. ++.++..++++|.+|+.
T Consensus 251 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~ 329 (530)
T 1wa5_B 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTG 329 (530)
T ss_dssp CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHHHHHHHHcC
Confidence 5555689999999999999999999999999999876554455566678999999999876 68889999999999995
Q ss_pred ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-ChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252 306 LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS-LPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW 384 (450)
Q Consensus 306 ~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~-~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~ 384 (450)
++.....+.+.|+++.|+.+|.+++..++..|+++|.+|+. +++....+.+ .|+++.|+++|...+..+++.|+.+|.
T Consensus 330 ~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~aL~ 408 (530)
T 1wa5_B 330 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID-ANLIPPLVKLLEVAEYKTKKEACWAIS 408 (530)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 46667778889999999999999999999999999999996 4677777777 799999999999999999999999999
Q ss_pred HhcccCch--hHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 385 SICKIAPE--ECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 385 ~L~~~~~~--~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
+++..... +....+++.|+++.|+.++.++ ++.++..|..+|..+...
T Consensus 409 ~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA-DNRIIEVTLDALENILKM 458 (530)
T ss_dssp HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 99886543 3455677899999999999887 788999999888876654
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.92 E-value=1.1e-23 Score=219.47 Aligned_cols=283 Identities=15% Similarity=0.117 Sum_probs=240.1
Q ss_pred hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHh-hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh
Q 041252 148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVD-EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK 226 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k 226 (450)
.+.++.|+..|++.+..+|..|+..|.+++..+ .++..+.. .|+++.|+++|.+..+..++..|+.+|.+|+.+++++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 467899999999989999999999999999654 57776665 4899999999975446789999999999999999999
Q ss_pred hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-
Q 041252 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL- 305 (450)
Q Consensus 227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~- 305 (450)
..+.+.|+++.|+.+|++++++++..|+++|.+|+..++.....+...|+++.|++++.++ ++.++..++.+|.+++.
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999987666677777889999999999986 67788889999999995
Q ss_pred ChHHHHHHHhcCCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh---------------
Q 041252 306 LNEVRSLVVSIGAVPQLVELLPSL-DPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM--------------- 369 (450)
Q Consensus 306 ~~~~~~~iv~~G~v~~Lv~lL~~~-~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~--------------- 369 (450)
+++++..+++.|+++.|+.+|+++ +...++.++.+|.+|+.+++++..+.+ .|+++.|++++.
T Consensus 174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~~~a~~~L~ 252 (529)
T 1jdh_A 174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLR 252 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence 688999999999999999999765 456778889999999999999999887 677766665554
Q ss_pred ------------------------cCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHc-CCCHHHHHHHH
Q 041252 370 ------------------------RVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS-GCNPVLKQRSA 424 (450)
Q Consensus 370 ------------------------~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s-~~~~~~k~~A~ 424 (450)
+.++.+++.|+++|++++..++ +.+..+.+.|+++.|+.++.+ +..+.+++.|.
T Consensus 253 ~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~ 331 (529)
T 1jdh_A 253 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 331 (529)
T ss_dssp HHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH-HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHH
Confidence 4456777788888888877664 345667789999999999976 33478999999
Q ss_pred HHHHHHHhhc
Q 041252 425 ELLKLCSLNY 434 (450)
Q Consensus 425 ~lL~~ls~~~ 434 (450)
.+|.+++.+.
T Consensus 332 ~~L~nl~~~~ 341 (529)
T 1jdh_A 332 CALRHLTSRH 341 (529)
T ss_dssp HHHHHHTSSS
T ss_pred HHHHHHHcCC
Confidence 9999987653
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.92 E-value=9.3e-24 Score=226.44 Aligned_cols=282 Identities=15% Similarity=0.118 Sum_probs=241.1
Q ss_pred hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhh-CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh
Q 041252 148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDE-GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK 226 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~-G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k 226 (450)
.+.++.|+..|++.+..+|..|+..|.+++..+ .++..+... |+++.|+++|.+..+.+++..|+.+|.+|+.+++++
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~ 91 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 91 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence 467999999999988999999999999999765 477777654 889999999986547789999999999999999999
Q ss_pred hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-
Q 041252 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL- 305 (450)
Q Consensus 227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~- 305 (450)
..+.+.|+++.|+.+|+++++.++..|+.+|.+|+..++.....+...|+++.|+++|+++ ++.++..++.+|.+|+.
T Consensus 92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999987766666777889999999999986 56777788889999995
Q ss_pred ChHHHHHHHhcCCHHHHHHhcCCCC-hhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhc--------------
Q 041252 306 LNEVRSLVVSIGAVPQLVELLPSLD-PDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMR-------------- 370 (450)
Q Consensus 306 ~~~~~~~iv~~G~v~~Lv~lL~~~~-~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~-------------- 370 (450)
+++++..+++.|+++.|+.+|++.+ ..+++.++.+|.+|+.+++++..+++ .|+++.|++++..
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~-~g~l~~L~~ll~~~~~~~~~~a~~~L~ 249 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLR 249 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH-TTHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7899999999999999999998764 67889999999999999999999988 7887777665544
Q ss_pred -------------------------CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCC-CHHHHHHHH
Q 041252 371 -------------------------VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGC-NPVLKQRSA 424 (450)
Q Consensus 371 -------------------------~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~-~~~~k~~A~ 424 (450)
.++.+++.|+++|++|+..++ +.+..+.+.|+++.|+.++.+.. .+.++..|.
T Consensus 250 nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~-~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~ 328 (644)
T 2z6h_A 250 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 328 (644)
T ss_dssp HHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHH
Confidence 455667777777777776554 34566778999999999998742 378999999
Q ss_pred HHHHHHHhh
Q 041252 425 ELLKLCSLN 433 (450)
Q Consensus 425 ~lL~~ls~~ 433 (450)
.+|.+++.+
T Consensus 329 ~aL~nL~~~ 337 (644)
T 2z6h_A 329 CALRHLTSR 337 (644)
T ss_dssp HHHHHHTSS
T ss_pred HHHHHHhcC
Confidence 999998754
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.92 E-value=1.2e-23 Score=225.67 Aligned_cols=282 Identities=17% Similarity=0.168 Sum_probs=239.7
Q ss_pred hcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chhh
Q 041252 149 GRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SESK 226 (450)
Q Consensus 149 ~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k 226 (450)
+.++.|+..|+++ +.+.+..|+..|++++.. .+++..+.+.|+++.|+.+|++. +..++..|+.+|.+|+.+ +..+
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhH
Confidence 6688899999875 678999999999999865 55999999999999999999886 789999999999999876 4667
Q ss_pred hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL 306 (450)
Q Consensus 227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~ 306 (450)
..+.+.|+++.|+.+|.+++.+++..++.+|.+|+..++..+..+.+.|+++.|++++++......+..++.+|++|+.+
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 213 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 77888999999999999999999999999999999766566666777899999999998864456678899999999999
Q ss_pred hHHHHHHHhcCCHHHHHHhcCC---------------------------------------CChhHHHHHHHHHHHhcCC
Q 041252 307 NEVRSLVVSIGAVPQLVELLPS---------------------------------------LDPDCLQLALCILDALSSL 347 (450)
Q Consensus 307 ~~~~~~iv~~G~v~~Lv~lL~~---------------------------------------~~~~~~~~al~~L~~L~~~ 347 (450)
++++..+++.|+++.|+.++.+ .+.++++.|+++|.+|+..
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999988888776644 4566777788888888765
Q ss_pred -hhhHHHHhccCCChHHHHHHHhcCC--hHHHHHHHHHHHHhcccCchh--HHHHHHhcChHHHHHHHHHcCCCHHHHHH
Q 041252 348 -PEGKLALKDCANTIPNTVRLLMRVS--EDCTQYALSILWSICKIAPEE--CSSAAVDAGLAAKLFLVIQSGCNPVLKQR 422 (450)
Q Consensus 348 -~e~r~~i~~~~g~i~~Lv~lL~~~s--~~~~e~A~~~L~~L~~~~~~~--~~~~~~~~G~i~~L~~ll~s~~~~~~k~~ 422 (450)
++++..+.+ .|+++.|+++|.+.+ +.+++.|+.+|.+|+...++. .+..+.+.|+++.|+.+|.++.++.+++.
T Consensus 294 ~~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~ 372 (644)
T 2z6h_A 294 NYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 372 (644)
T ss_dssp CHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHH
T ss_pred CHHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHH
Confidence 577888888 899999999998754 699999999999999865432 34446789999999999998756788999
Q ss_pred HHHHHHHHHhh
Q 041252 423 SAELLKLCSLN 433 (450)
Q Consensus 423 A~~lL~~ls~~ 433 (450)
|..+|.+++.+
T Consensus 373 a~~~L~nLa~~ 383 (644)
T 2z6h_A 373 TVGLIRNLALC 383 (644)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHccC
Confidence 99999998765
No 30
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=4.9e-24 Score=198.46 Aligned_cols=196 Identities=19% Similarity=0.209 Sum_probs=169.8
Q ss_pred hcHHHHHHHhhccch--HHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-Cchh
Q 041252 149 GRASELLGTLKKVKG--QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DSES 225 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~--~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~~~ 225 (450)
-.++.++..|++++. +.+..|+.+|++++..++.+|..|++.|+||+|+++|++. +.++++.|+++|.||+. ++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHH
Confidence 458899999999887 8889999999999999999999999999999999999885 78999999999999998 5799
Q ss_pred hhhccCCCchHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHh---cC------------CC
Q 041252 226 KTNLMQPAKVSLLVDMLN-EGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK---NK------------RH 289 (450)
Q Consensus 226 k~~i~~~g~i~~Lv~lL~-~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~---~~------------~~ 289 (450)
|..|++.|+|+.|+++|. +++.+++++|+.+|++|+..++.+..++ + +++++|+.++. ++ .+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~-~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMI-T-EALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHH-H-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHH-h-ccHHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999998 5799999999999999987766555544 4 46999998653 11 13
Q ss_pred ccchhHHHHHHHHhcc-ChHHHHHHHhc-CCHHHHHHhcCC------CChhHHHHHHHHHHHhcCC
Q 041252 290 PNGILPGLSLLRSICL-LNEVRSLVVSI-GAVPQLVELLPS------LDPDCLQLALCILDALSSL 347 (450)
Q Consensus 290 ~~~~~~al~aL~~Ls~-~~~~~~~iv~~-G~v~~Lv~lL~~------~~~~~~~~al~~L~~L~~~ 347 (450)
+.++.+|.++|+||+. ++++|..|++. |+|+.|+.+++. .+...+|+|+.+|+||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 4678899999999996 66999999986 778999999954 2568999999999999854
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.90 E-value=2.4e-22 Score=219.86 Aligned_cols=280 Identities=15% Similarity=0.132 Sum_probs=239.4
Q ss_pred hcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chhh
Q 041252 149 GRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SESK 226 (450)
Q Consensus 149 ~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k 226 (450)
+.++.|+..|++. +.+.|..|+..|++++.. .+++..+.+.|+|+.|+.+|++. +..++..|+++|.+|+.+ ++.+
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhH
Confidence 5678888888765 788999999999998864 56899999999999999999886 788999999999999876 4667
Q ss_pred hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC
Q 041252 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL 306 (450)
Q Consensus 227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~ 306 (450)
..+++.|+++.|+.+|.+++..++..++.+|.+|+..++..+..+...|+++.|+.++++.........++.+|++|+.+
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 77778999999999999999999999999999998765555556667789999999999864444566889999999999
Q ss_pred hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 041252 307 NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSI 386 (450)
Q Consensus 307 ~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L 386 (450)
..++..+++.|+++.|+.+|.+.+..+++.|+++|.+|+...... ... .++++.|+++|...+..+++.|+.+|.+|
T Consensus 350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~-~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L 426 (780)
T 2z6g_A 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGM-EGLLGTLVQLLGSDDINVVTCAAGILSNL 426 (780)
T ss_dssp TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCC-HHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhh-hhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999764321 122 47899999999999999999999999999
Q ss_pred cccCchhHHHHHHhcChHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhhc
Q 041252 387 CKIAPEECSSAAVDAGLAAKLFLVIQS-GCNPVLKQRSAELLKLCSLNY 434 (450)
Q Consensus 387 ~~~~~~~~~~~~~~~G~i~~L~~ll~s-~~~~~~k~~A~~lL~~ls~~~ 434 (450)
+..++ +.+..+++.|+++.|+.++.+ +..+.++..|..+|..++...
T Consensus 427 ~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~ 474 (780)
T 2z6g_A 427 TCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 474 (780)
T ss_dssp TSSCH-HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSS
T ss_pred HhCCH-HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 98775 445677789999999999976 323589999999999987643
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=3.7e-22 Score=182.87 Aligned_cols=197 Identities=19% Similarity=0.222 Sum_probs=179.7
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC-Cchhhh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL-DSESKT 227 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~-~~~~k~ 227 (450)
+..+.++.+|++.+.+.+..|+..|.+++..+++++..+.+.|+++.|+.+|.+. +..++..|+++|.+++. +++++.
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHH
Confidence 5567889999999999999999999999988889999999999999999999886 78999999999999985 668888
Q ss_pred hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC-
Q 041252 228 NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL- 306 (450)
Q Consensus 228 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~- 306 (450)
.+++.|+++.|+.+|.++++.++..|+++|.+|+..++.....+...|+++.|+++++++ ++.++..++++|.+|+.+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSC
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999877666666667889999999999986 688999999999999976
Q ss_pred hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC
Q 041252 307 NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL 347 (450)
Q Consensus 307 ~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 347 (450)
++++..+++.|+++.|++++.+.++++++.|+.+|.+|+.+
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999999999999999863
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=9.2e-22 Score=180.23 Aligned_cols=198 Identities=26% Similarity=0.248 Sum_probs=176.9
Q ss_pred CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHH
Q 041252 231 QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEV 309 (450)
Q Consensus 231 ~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~ 309 (450)
..+..+.|+.+|.+++++++..|+++|.+|+..++.....+.+.|+++.|+++|+++ ++.++..|+++|.||+ .++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHH
Confidence 468899999999999999999999999999977666666777889999999999987 6889999999999999 57789
Q ss_pred HHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252 310 RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK 388 (450)
Q Consensus 310 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 388 (450)
+..+++.|+++.|+.+|.++++.+++.|+++|.+|+.. ++.+..+.+ .|+++.|++++.+.+..+++.|+.+|++++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999964 667778887 8999999999999999999999999999999
Q ss_pred cCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252 389 IAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL 432 (450)
Q Consensus 389 ~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~ 432 (450)
.++ +.+..+.+.|+++.|+.++.++ ++.+++.|..+|..++.
T Consensus 168 ~~~-~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGN-EQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCH-HHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred CCc-HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 765 4456778999999999999987 78999999999998764
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=2.2e-22 Score=220.05 Aligned_cols=278 Identities=17% Similarity=0.161 Sum_probs=244.3
Q ss_pred hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhh-CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh
Q 041252 148 QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDE-GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK 226 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~-G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k 226 (450)
.+.++.|+..|++.+..+|..|+..|.+++.. ..++..+.+. |+++.|+.+|.+..+..++..|+.+|.+|+.+++++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 47789999999988889999999999999865 4577777754 899999999975447789999999999999999999
Q ss_pred hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-
Q 041252 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL- 305 (450)
Q Consensus 227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~- 305 (450)
..+.+.|+++.|+.+|++++..++..|+++|.+|+...+.....+...|+++.|+.+|.++ +..++..++.+|.+|+.
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~-~~~v~~~a~~aL~~La~~ 306 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYG 306 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999988777777777889999999999985 57788899999999994
Q ss_pred ChHHHHHHHhcCCHHHHHHhcCCCC-hhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252 306 LNEVRSLVVSIGAVPQLVELLPSLD-PDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW 384 (450)
Q Consensus 306 ~~~~~~~iv~~G~v~~Lv~lL~~~~-~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~ 384 (450)
+++++..+++.|+++.|+.+|++++ ....+.++.+|.+|+.+++++..+++ .|+++.|+.++...+...++.|+++|.
T Consensus 307 ~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~~~~a~~~L~ 385 (780)
T 2z6g_A 307 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLR 385 (780)
T ss_dssp CHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHH-TTHHHHHGGGTTCSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHH-hchHHHHHHHHcCCchHHHHHHHHHHH
Confidence 6889999999999999999998765 45677899999999999999999998 899999999999989999999999999
Q ss_pred HhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 385 SICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 385 ~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
+|+...+.. ....++++.|+.++.+. ++.+++.|..+|..++.+
T Consensus 386 ~L~~~~~~~----~~~~~~i~~Lv~lL~~~-d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 386 NLSDAATKQ----EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCN 429 (780)
T ss_dssp HHHTTCTTC----SCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSS
T ss_pred HHhccchhh----hhhhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhC
Confidence 999876432 12257899999999876 788999999999988765
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.6e-21 Score=204.29 Aligned_cols=282 Identities=14% Similarity=0.109 Sum_probs=224.4
Q ss_pred hhcHHHHHHHhhc-cchHHHHHHHHHHHHHHHHcH-------------------------------------H-HHHHHH
Q 041252 148 QGRASELLGTLKK-VKGQARVQALKELHQIAAAHA-------------------------------------S-ARKTMV 188 (450)
Q Consensus 148 ~~~i~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~~-------------------------------------~-~r~~i~ 188 (450)
++.+..|+..++. .+......++..|.+++...+ + +++.+.
T Consensus 375 ~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ 454 (778)
T 3opb_A 375 ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL 454 (778)
T ss_dssp HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH
Confidence 3557778888874 455566666666665543110 1 678899
Q ss_pred hhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHH---HHHHHHHHHHHHhccCC
Q 041252 189 DEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVE---TKINCTRLIEKLMEEKD 265 (450)
Q Consensus 189 ~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~---~~~~aa~~L~~La~~~~ 265 (450)
+.|+||.|+.++++. +..+++.|+++|.+|+.++++|..+++.|++++|+.+|.+++.. .|.+|+.+|.+|+...+
T Consensus 455 eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 455 RTELISFLKREMHNL-SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp TTTHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred HCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 999999999999875 78999999999999999999999999999999999999988544 89999999999975433
Q ss_pred ChhhHhh---hhhHHHHHHHHHhcCCCcc-------------chhHHHHHHHHhccCh-----HHHHHHHhc-CCHHHHH
Q 041252 266 FRPEIVS---SHRLLIGLMRLVKNKRHPN-------------GILPGLSLLRSICLLN-----EVRSLVVSI-GAVPQLV 323 (450)
Q Consensus 266 ~~~~~~~---~~g~l~~Lv~lL~~~~~~~-------------~~~~al~aL~~Ls~~~-----~~~~~iv~~-G~v~~Lv 323 (450)
... ++. ..|++++|+.+|....... .+..|+.||.||+..+ +.|..+++. |+++.|.
T Consensus 534 p~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 534 PGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp HHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 222 232 2489999999998311111 1568999999999765 458889985 9999999
Q ss_pred HhcCCCChhHHHHHHHHHHHhcCChhhH-HHHhccC-----CChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHH
Q 041252 324 ELLPSLDPDCLQLALCILDALSSLPEGK-LALKDCA-----NTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSA 397 (450)
Q Consensus 324 ~lL~~~~~~~~~~al~~L~~L~~~~e~r-~~i~~~~-----g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~ 397 (450)
++|.+.+..++..|+.++.||+.+++++ ..+.+.. +.++.||.++...+..+++.|+++|.+++..++ ..++.
T Consensus 613 ~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~-~ia~~ 691 (778)
T 3opb_A 613 NLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP-LIAKE 691 (778)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH-HHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh-HHHHH
Confidence 9999999999999999999999999886 3554312 248899999999999999999999999977665 34456
Q ss_pred HHhc-ChHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhh
Q 041252 398 AVDA-GLAAKLFLVIQS--GCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 398 ~~~~-G~i~~L~~ll~s--~~~~~~k~~A~~lL~~ls~~ 433 (450)
+++. +++..++.+++. + ++.++.+++.++.++...
T Consensus 692 ll~~~~gi~~Ll~lL~~~~~-~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 692 LLTKKELIENAIQVFADQID-DIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HTTCHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT
T ss_pred HHHccccHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHh
Confidence 6665 899999999988 5 789999999999999873
No 36
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.86 E-value=1e-22 Score=159.46 Aligned_cols=74 Identities=30% Similarity=0.410 Sum_probs=69.7
Q ss_pred ccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252 63 LAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY 137 (450)
Q Consensus 63 ~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~ 137 (450)
...+|++|+||||+++|+|||+++|||||||+||++||.. +.+||.|+++++..+++||+.|+++|+.|+.+++
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999999999999999999996 7899999999999999999999999999998865
No 37
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.86 E-value=2.9e-22 Score=161.58 Aligned_cols=75 Identities=31% Similarity=0.431 Sum_probs=70.4
Q ss_pred hccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252 62 DLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY 137 (450)
Q Consensus 62 ~~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~ 137 (450)
+...+|++|+||||+++|+|||+++|||||||.||++||.. +.+||.|+++++..+++||+.|+++|+.|+.+++
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 34578999999999999999999999999999999999985 7899999999999999999999999999999875
No 38
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.85 E-value=4.4e-22 Score=159.88 Aligned_cols=76 Identities=29% Similarity=0.367 Sum_probs=70.9
Q ss_pred ccCCCCeeeCcCCCCCCCCCeeCCCC-CcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcccc
Q 041252 63 LAEIPSVFVCPISLEPMQDPVTLCTG-QTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYLL 139 (450)
Q Consensus 63 ~~~~p~~~~Cpi~~~~m~dPv~~~~g-~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~~~ 139 (450)
...+|++|+||||+++|+|||+++|| |||||.||++||.. +.+||.|++++...+++||+.|+++|+.|+.+++..
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 35789999999999999999999999 99999999999986 689999999999999999999999999999987643
No 39
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.84 E-value=3.1e-20 Score=179.72 Aligned_cols=224 Identities=17% Similarity=0.156 Sum_probs=183.7
Q ss_pred hhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHH-HhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHH
Q 041252 206 HAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD-MLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLV 284 (450)
Q Consensus 206 ~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL 284 (450)
.+.+..|+..|.++..+.++...+.+.|+++.|+. +|.++++++|..|+++|.+++.+++..+..+...|+++.|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 35677899999999998889999999999999999 99999999999999999999988877777788889999999999
Q ss_pred hcCCCccchhHHHHHHHHhcc-ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChH
Q 041252 285 KNKRHPNGILPGLSLLRSICL-LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIP 362 (450)
Q Consensus 285 ~~~~~~~~~~~al~aL~~Ls~-~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~ 362 (450)
++..++.+++.|+++|.||+. ++.....+++.|+++.|+.+|.+++..++..|+++|.+|+.. ++.+..+++ .|+++
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~g~i~ 212 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGMVQ 212 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHH-cCCHH
Confidence 964457789999999999995 556677888999999999999999999999999999999864 788999998 89999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhc--ChHHHH---HHHHHcCC-CHHHHHHHHHHHHHHH
Q 041252 363 NTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDA--GLAAKL---FLVIQSGC-NPVLKQRSAELLKLCS 431 (450)
Q Consensus 363 ~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~--G~i~~L---~~ll~s~~-~~~~k~~A~~lL~~ls 431 (450)
.|+++|.+.+..+++.|+.+|.+|....+ ......... .....| ..-+++.. .....+.|..++..+-
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~-~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFP-QGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCH-HHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCCh-hHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999998754 222222211 122222 23334221 3566677777777654
No 40
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.83 E-value=4.6e-21 Score=169.45 Aligned_cols=76 Identities=26% Similarity=0.369 Sum_probs=71.1
Q ss_pred ccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhccc
Q 041252 63 LAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYL 138 (450)
Q Consensus 63 ~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~~ 138 (450)
...+|++|+||||+++|+|||+++|||||||.||++||..++.+||.|+.+++..+++||+.|+++|+.|+.+++.
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~ 175 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGW 175 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTT
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCC
Confidence 4689999999999999999999999999999999999987545799999999999999999999999999999875
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.82 E-value=3.3e-19 Score=172.49 Aligned_cols=190 Identities=17% Similarity=0.172 Sum_probs=166.1
Q ss_pred hHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHh-hhCCCCChhhHHHHHHHHHhcCCC-chhhhhccCCCchHHHHH
Q 041252 163 GQARVQALKELHQIAAAHASARKTMVDEGGVALISS-LLGPFTSHAVGSEAVGVLVNLTLD-SESKTNLMQPAKVSLLVD 240 (450)
Q Consensus 163 ~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~-lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~ 240 (450)
.+.+..|+..|..++. +.+|...+.+.|++|.|+. +|.+. +..++..|+++|.+++.+ +.++..+++.|++++|+.
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 3578889999999985 4568888999999999999 99875 789999999999998875 578889999999999999
Q ss_pred HhcCC-CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHHHHHHHhcCC
Q 041252 241 MLNEG-SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEVRSLVVSIGA 318 (450)
Q Consensus 241 lL~~~-~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~ 318 (450)
+|+++ +..++.+|+++|.+|+.++......+...|+++.|+.+|+++ ++.++..|+++|.+|+ .+++.+..+++.|+
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~ 210 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 99964 899999999999999877666565677788999999999986 7889999999999998 45778999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHh
Q 041252 319 VPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALK 355 (450)
Q Consensus 319 v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~ 355 (450)
++.|+.+|.+.+..+++.|+.+|.+|+.. +..+....
T Consensus 211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~ 248 (296)
T 1xqr_A 211 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR 248 (296)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh
Confidence 99999999999999999999999999976 44444443
No 42
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.5e-18 Score=184.37 Aligned_cols=327 Identities=13% Similarity=0.113 Sum_probs=238.8
Q ss_pred CCCCcccHHHHHH----HHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhcc
Q 041252 86 CTGQTYERSNILK----WFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKV 161 (450)
Q Consensus 86 ~~g~ty~r~~I~~----~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~ 161 (450)
.|.+.=||..|.+ |+...-. . +-+.++++--+++-|..... ........+..+...|.+.
T Consensus 283 ACi~~~cR~~I~~~~~~~L~~~l~----------~-~~ir~lAavvL~KL~~~~~~-----~~~si~~La~~~~~~L~~~ 346 (778)
T 3opb_A 283 ACIDETMRTYITENYLQLLERSLN----------V-EDVQIYSALVLVKTWSFTKL-----TCINLKQLSEIFINAISRR 346 (778)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHHTT----------S-GGGHHHHHHHHHHHTGGGTC-----TTCCHHHHHHHHHHHTTTC
T ss_pred HhCCcHHHHHHHHhHHHHHHHHhc----------c-HHHHHHHHHHHHHHhcCCCC-----CcCcHHHHHHHHHHHHhcC
Confidence 4777777777765 4443211 1 12344555556666654321 1111223455566667766
Q ss_pred chHHHHHHHHHHHHHHHHcHHHHHHHHhh-CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCch----------------
Q 041252 162 KGQARVQALKELHQIAAAHASARKTMVDE-GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSE---------------- 224 (450)
Q Consensus 162 ~~~~~~~Al~~L~~l~~~~~~~r~~i~~~-G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~---------------- 224 (450)
+.+.+..|++.|..++. +++.|+.+++. |.++.|+.+++...+..+...++.+|.||+.+.+
T Consensus 347 ~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A 425 (778)
T 3opb_A 347 IVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXX 425 (778)
T ss_dssp CHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC---------
T ss_pred CccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhc
Confidence 66668999999999975 56788888876 6699999999863467899999999999875221
Q ss_pred -----------------------hhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHH
Q 041252 225 -----------------------SKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLM 281 (450)
Q Consensus 225 -----------------------~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv 281 (450)
++..+.+.|+++.|+.+++++++.+|+.|+++|.+|+.+.+. +..+.+.|+++.|+
T Consensus 426 ~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~-R~~lvqqGal~~LL 504 (778)
T 3opb_A 426 XXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNF-IPQLAQQGAVKIIL 504 (778)
T ss_dssp ---------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGG-HHHHHHTTHHHHHH
T ss_pred cccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHH
Confidence 456788999999999999999999999999999999876554 44566789999999
Q ss_pred HHHhcCCCcc--chhHHHHHHHHhccChHHHHHHH--h-cCCHHHHHHhcCC-CCh-------------hHHHHHHHHHH
Q 041252 282 RLVKNKRHPN--GILPGLSLLRSICLLNEVRSLVV--S-IGAVPQLVELLPS-LDP-------------DCLQLALCILD 342 (450)
Q Consensus 282 ~lL~~~~~~~--~~~~al~aL~~Ls~~~~~~~~iv--~-~G~v~~Lv~lL~~-~~~-------------~~~~~al~~L~ 342 (450)
.+|.++.... ++..|+.||.+|....+....+- + .|+|++|+++|.. ... --+..|+.+|.
T Consensus 505 ~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALT 584 (778)
T 3opb_A 505 EYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALT 584 (778)
T ss_dssp HHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHH
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHH
Confidence 9998863221 68899999999985443333221 1 4999999999973 111 12778999999
Q ss_pred HhcCCh-----hhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHh------cChHHHHHHHH
Q 041252 343 ALSSLP-----EGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVD------AGLAAKLFLVI 411 (450)
Q Consensus 343 ~L~~~~-----e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~------~G~i~~L~~ll 411 (450)
||+..+ +.|..++.+.|+++.|+.+|.+.+..+++.|+.++.||+.+.. ...+.... .+.++.|+.++
T Consensus 585 NLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e-~i~~k~~~~~~~~~~~rL~lLV~Ll 663 (778)
T 3opb_A 585 NLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL-TIAAKFFNLENPQSLRNFNILVKLL 663 (778)
T ss_dssp HHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG-GTGGGTSCCSSHHHHHHHHHHHHGG
T ss_pred HHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH-HHHHHHHhhcCchhhccHHHHHHHH
Confidence 999876 3477777733899999999999999999999999999997542 21112221 22478899999
Q ss_pred HcCCCHHHHHHHHHHHHHHHh
Q 041252 412 QSGCNPVLKQRSAELLKLCSL 432 (450)
Q Consensus 412 ~s~~~~~~k~~A~~lL~~ls~ 432 (450)
+++ +..+|++|+++|.+++.
T Consensus 664 ~s~-D~~~r~AAagALAnLts 683 (778)
T 3opb_A 664 QLS-DVESQRAVAAIFANIAT 683 (778)
T ss_dssp GCS-CHHHHHHHHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHHHHHhcC
Confidence 887 89999999999999853
No 43
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.80 E-value=4.2e-20 Score=142.49 Aligned_cols=75 Identities=48% Similarity=0.853 Sum_probs=70.5
Q ss_pred cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhccc
Q 041252 64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYL 138 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~~ 138 (450)
.++|++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|+.++...++.||..|+++|+.|..+++.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 468899999999999999999999999999999999997788999999999989999999999999999998764
No 44
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-19 Score=144.93 Aligned_cols=73 Identities=25% Similarity=0.414 Sum_probs=64.6
Q ss_pred CCCCeeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcC-----CCCCCCcCCc---CCCCCCcchHHHHHHHHHHHHh
Q 041252 65 EIPSVFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSLG-----RYTCPTTMQE---LWDDSVTPNKTLYHLIHTWFSQ 135 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~-----~~~cP~~~~~---l~~~~l~~n~~L~~~I~~w~~~ 135 (450)
..+.+|+||||+++|+|||+++ |||+|||.||++||..+ ..+||+++.+ +...+++||..|+++|+.|+.+
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 4578899999999999999996 99999999999999863 4689995544 8889999999999999999988
Q ss_pred cc
Q 041252 136 KY 137 (450)
Q Consensus 136 ~~ 137 (450)
+.
T Consensus 83 ~~ 84 (94)
T 2yu4_A 83 RH 84 (94)
T ss_dssp CC
T ss_pred hc
Confidence 65
No 45
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.75 E-value=2.8e-19 Score=171.87 Aligned_cols=75 Identities=25% Similarity=0.385 Sum_probs=70.8
Q ss_pred cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhccc
Q 041252 64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKYL 138 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~~ 138 (450)
..+|.+|+||||+++|+|||+++|||||||.||++|+..++.+||.|+.+++..+++||..|+++|++|+.+++.
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 277 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 277 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCC
Confidence 578999999999999999999999999999999999998666799999999989999999999999999999875
No 46
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.65 E-value=2.3e-17 Score=120.03 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=50.4
Q ss_pred eeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHH
Q 041252 69 VFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKT 124 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~ 124 (450)
+|.||||+++|+|||++ +|||+|||++|++|+.. +.+||.|++++..++++||+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECcc
Confidence 69999999999999999 89999999999999986 467999999999999999863
No 47
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=125.59 Aligned_cols=75 Identities=25% Similarity=0.347 Sum_probs=67.1
Q ss_pred cCCCCeeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhc-CCCCCCCcCCcC-CCCCCcchHHHHHHHHHHHHhccc
Q 041252 64 AEIPSVFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSL-GRYTCPTTMQEL-WDDSVTPNKTLYHLIHTWFSQKYL 138 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~-~~~~cP~~~~~l-~~~~l~~n~~L~~~I~~w~~~~~~ 138 (450)
..++++|.||||.++|.|||+++ |||+||+.||.+|+.. +...||.|+.++ ....+.+|..++++|+.|...++.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 46788999999999999999999 9999999999999975 357899999997 567899999999999999887654
No 48
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.62 E-value=1.7e-16 Score=170.24 Aligned_cols=76 Identities=30% Similarity=0.380 Sum_probs=71.0
Q ss_pred hhccCCCCeeeCcCCCCCCCCCeeCCCC-CcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252 61 LDLAEIPSVFVCPISLEPMQDPVTLCTG-QTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY 137 (450)
Q Consensus 61 ~~~~~~p~~~~Cpi~~~~m~dPv~~~~g-~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~ 137 (450)
.+..++|++|+|||++++|+|||++++| +||||++|++|+.. +.+||.|+++++..+++||++|+++|++|+.++.
T Consensus 883 ~~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 883 LEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp HHHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred ccccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence 3357999999999999999999999998 79999999999987 6799999999999999999999999999999865
No 49
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.54 E-value=2.9e-15 Score=125.94 Aligned_cols=69 Identities=17% Similarity=0.308 Sum_probs=62.9
Q ss_pred CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC-CCCcchHHHHHHHHHHHHh
Q 041252 67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD-DSVTPNKTLYHLIHTWFSQ 135 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~-~~l~~n~~L~~~I~~w~~~ 135 (450)
++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++.. ..+.+|..+.++|+.|...
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 45689999999999999999999999999999999766789999999977 7899999999999998754
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.9e-15 Score=139.58 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=64.9
Q ss_pred cCCCCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhc-CCCCCCC--cCCcCCCCCCcchHHHHHHHHHHHHh
Q 041252 64 AEIPSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSL-GRYTCPT--TMQELWDDSVTPNKTLYHLIHTWFSQ 135 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~-~~~~cP~--~~~~l~~~~l~~n~~L~~~I~~w~~~ 135 (450)
.....+|+||||+++|+|||+. .|||+|||.||.+||.. +...||+ |++.+...++.||+.|+.+|+.|..+
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 4567789999999999999985 99999999999999986 3467999 99999999999999999999999775
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.50 E-value=8.9e-15 Score=126.78 Aligned_cols=70 Identities=21% Similarity=0.408 Sum_probs=63.7
Q ss_pred CCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCC-CCcchHHHHHHHHHHHHh
Q 041252 66 IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDD-SVTPNKTLYHLIHTWFSQ 135 (450)
Q Consensus 66 ~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~-~l~~n~~L~~~I~~w~~~ 135 (450)
+++.|.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++... .+.+|..++++|+.|...
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 4567899999999999999999999999999999997667899999999877 899999999999988753
No 52
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.50 E-value=5e-13 Score=138.76 Aligned_cols=276 Identities=15% Similarity=0.166 Sum_probs=208.0
Q ss_pred hhcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCC-CChhhHHHHHHHHHhc-CCCch
Q 041252 148 QGRASELLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPF-TSHAVGSEAVGVLVNL-TLDSE 224 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~-~~~~v~~~Al~~L~~L-s~~~~ 224 (450)
...|+.|+..|++. -.+.|+.|+..|+.++++ +|..+. .+|++.|+..|+.. .|.++...++.+|.++ +.+++
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 35688899988774 467899999999999753 555554 55699999999753 4678888899999884 33322
Q ss_pred h-----------------hhhc-cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCC-hhhHh-hhhhHHHHHHHHH
Q 041252 225 S-----------------KTNL-MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDF-RPEIV-SSHRLLIGLMRLV 284 (450)
Q Consensus 225 ~-----------------k~~i-~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~-~~~~~-~~~g~l~~Lv~lL 284 (450)
. ...+ .+.+.|+.|+.+|++.+..+|.++..+|..|+..... .++.+ ...++++.|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 1 1122 3578999999999999999999999999999876654 34444 5668999999999
Q ss_pred hcCCCccchhHHHHHHHHhccChHHHHHHHh-cCCHHHHHHhcCCCC----hhHHHHHHHHHHHhcCC-hhhHHHHhccC
Q 041252 285 KNKRHPNGILPGLSLLRSICLLNEVRSLVVS-IGAVPQLVELLPSLD----PDCLQLALCILDALSSL-PEGKLALKDCA 358 (450)
Q Consensus 285 ~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~-~G~v~~Lv~lL~~~~----~~~~~~al~~L~~L~~~-~e~r~~i~~~~ 358 (450)
.+. +..++..++..|.+|+.+..+..+++. .|+++.|+.++.+.. ..+.+.|+.+|.+|... +.|+..|.+ .
T Consensus 176 ~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE-t 253 (651)
T 3grl_A 176 ADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE-G 253 (651)
T ss_dssp GCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH-T
T ss_pred hCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH-c
Confidence 986 466788899999999977666666665 699999999996543 47899999999999865 779999999 8
Q ss_pred CChHHHHHHHhcCC------hHHHHH---HHHHHHHhcccCc-----hhHHHHHHhcChHHHHHHHHHcC-CCHHHHHHH
Q 041252 359 NTIPNTVRLLMRVS------EDCTQY---ALSILWSICKIAP-----EECSSAAVDAGLAAKLFLVIQSG-CNPVLKQRS 423 (450)
Q Consensus 359 g~i~~Lv~lL~~~s------~~~~e~---A~~~L~~L~~~~~-----~~~~~~~~~~G~i~~L~~ll~s~-~~~~~k~~A 423 (450)
|+++.|..++.... +....+ ++.++.-++..+. ...+..+.+.|++..|+.++.+. ....++..|
T Consensus 254 ~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~A 333 (651)
T 3grl_A 254 SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTET 333 (651)
T ss_dssp TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHH
T ss_pred CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHH
Confidence 99999999986432 223333 5566666665432 13466677999999999998754 345677666
Q ss_pred HHHHHH
Q 041252 424 AELLKL 429 (450)
Q Consensus 424 ~~lL~~ 429 (450)
...+.-
T Consensus 334 l~tla~ 339 (651)
T 3grl_A 334 INTVSE 339 (651)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 53
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.46 E-value=5.6e-12 Score=130.93 Aligned_cols=280 Identities=15% Similarity=0.145 Sum_probs=212.4
Q ss_pred hcHHHHHHHhhcc--chHHHHHHHHHHHHHHHHcHH-----------------HHHH-HHhhCChHHHHhhhCCCCChhh
Q 041252 149 GRASELLGTLKKV--KGQARVQALKELHQIAAAHAS-----------------ARKT-MVDEGGVALISSLLGPFTSHAV 208 (450)
Q Consensus 149 ~~i~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~-----------------~r~~-i~~~G~i~~Lv~lL~~~~~~~v 208 (450)
..++.|+..|++. +.+....+++.|.++...++. +.+. +.+.+.|+.|+.+|... +..+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~-df~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF-DFHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC-CHHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc-cHHH
Confidence 4578888888764 455667788888776543221 2223 34568899999999875 7889
Q ss_pred HHHHHHHHHhcCCCc--hhhhhcc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHh
Q 041252 209 GSEAVGVLVNLTLDS--ESKTNLM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK 285 (450)
Q Consensus 209 ~~~Al~~L~~Ls~~~--~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~ 285 (450)
+..++..|..|+... .+++.|. .+++|+.|+.+|+.....+|..|..+|.+|+.++...+.++.-.|+++.|+.+++
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 999999999977643 3677777 6799999999999989999999999999999999888888888899999999998
Q ss_pred cCCC---ccchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCCh------hHHHH---HHHHHHHhcCC-----
Q 041252 286 NKRH---PNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDP------DCLQL---ALCILDALSSL----- 347 (450)
Q Consensus 286 ~~~~---~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~------~~~~~---al~~L~~L~~~----- 347 (450)
.++. ..++..++.+|.||. .+..|+..+.|.|+++.|..+|..... ....+ ++.+++.|...
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 7531 245679999999998 456799999999999999999965432 13334 77788888753
Q ss_pred --hhhHHHHhccCCChHHHHHHHhcC--ChHHHHHHHHHHHHhcccCchhHHHHHHhc---------ChHHHHHHHHHcC
Q 041252 348 --PEGKLALKDCANTIPNTVRLLMRV--SEDCTQYALSILWSICKIAPEECSSAAVDA---------GLAAKLFLVIQSG 414 (450)
Q Consensus 348 --~e~r~~i~~~~g~i~~Lv~lL~~~--s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~---------G~i~~L~~ll~s~ 414 (450)
..++.++.+ .|+++.|+++++.. +..++..|+.++..+...++. .+....+. -++..|+.++.+.
T Consensus 299 ~t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~-~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~ 376 (651)
T 3grl_A 299 ATSSCQKAMFQ-CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQV-NQDYFASVNAPSNPPRPAIVVLLMSMVNER 376 (651)
T ss_dssp HHHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHCEESSSSCEEHHHHHHHHHTCTT
T ss_pred CCHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHH-HHHHHhhccCCCCCCcChHHHHHHHHhccc
Confidence 357888888 79999999999875 578889999999999888763 33333332 1333344555555
Q ss_pred CCHHHHHHHHHHHHHHH
Q 041252 415 CNPVLKQRSAELLKLCS 431 (450)
Q Consensus 415 ~~~~~k~~A~~lL~~ls 431 (450)
.....|-+|...++-.-
T Consensus 377 ~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 377 QPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 45778877777776643
No 54
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.45 E-value=3.6e-14 Score=114.24 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=63.4
Q ss_pred CCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhcc
Q 041252 67 PSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQKY 137 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~~ 137 (450)
++++.||||.+.|.+|+++ +|||+||+.||.+|+.. ..+||.|+.++...++.+|..++++|+.|.....
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence 3468899999999999988 89999999999999996 6789999999988889999999999999987643
No 55
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.44 E-value=5.4e-14 Score=113.37 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=61.7
Q ss_pred CCCeeeCcCCCCCCCCCee-CCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHh
Q 041252 66 IPSVFVCPISLEPMQDPVT-LCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQ 135 (450)
Q Consensus 66 ~p~~~~Cpi~~~~m~dPv~-~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~ 135 (450)
+.+++.||||++.|.+|++ ++|||+||+.||.+|+......||.|+.++...++.+|..+..++++..+.
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 3456889999999999999 999999999999999998557899999999989999999888877776554
No 56
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.41 E-value=9.6e-14 Score=113.62 Aligned_cols=68 Identities=13% Similarity=0.305 Sum_probs=60.6
Q ss_pred CCCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCCC----CCcchHHHHHHHHHHHH
Q 041252 66 IPSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWDD----SVTPNKTLYHLIHTWFS 134 (450)
Q Consensus 66 ~p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~----~l~~n~~L~~~I~~w~~ 134 (450)
+++++.||||.++|.+|+++ +|||+||+.||.+|+.. ...||.|+..+... .+.+|..+.++++.|..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 45678999999999999997 99999999999999997 58899999998765 67899999999988854
No 57
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.40 E-value=1e-13 Score=115.35 Aligned_cols=70 Identities=20% Similarity=0.387 Sum_probs=63.4
Q ss_pred cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHH
Q 041252 64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWF 133 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~ 133 (450)
..++++|.||||.++|.+|++++|||+||+.||.+|+..+..+||.|+.++....+.+|..+.+.|..+.
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 3677889999999999999999999999999999999975668999999998888999999999887763
No 58
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.40 E-value=9.6e-15 Score=112.46 Aligned_cols=64 Identities=22% Similarity=0.383 Sum_probs=56.1
Q ss_pred CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcC------CCCCCCcCCcCCCCCCcchHHHHHH
Q 041252 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLG------RYTCPTTMQELWDDSVTPNKTLYHL 128 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~------~~~cP~~~~~l~~~~l~~n~~L~~~ 128 (450)
.+.+++.||||.+.|.+|++++|||+||+.||.+|+... ...||.|+.++...++.+|..|+++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 566789999999999999999999999999999999863 5689999999988888888766543
No 59
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.4e-13 Score=106.45 Aligned_cols=63 Identities=24% Similarity=0.252 Sum_probs=53.7
Q ss_pred CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHH
Q 041252 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLI 129 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I 129 (450)
.....+.||||.+.|.+|++++|||+||+.||.+|+.. ...||.|+.++. ..+.+|..+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~ 73 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKL 73 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHH
Confidence 34567899999999999999999999999999999986 678999999986 6777886554443
No 60
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=5.4e-14 Score=109.65 Aligned_cols=64 Identities=22% Similarity=0.380 Sum_probs=56.2
Q ss_pred CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcC-----CCCCCCcCCcCCCCCCcchHHHHHH
Q 041252 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLG-----RYTCPTTMQELWDDSVTPNKTLYHL 128 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~-----~~~cP~~~~~l~~~~l~~n~~L~~~ 128 (450)
.+.+++.||||.+.+.+|++++|||+||+.||.+|+... ...||.|+.++...++.+|..++++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 456778999999999999999999999999999999862 5789999999988889998766543
No 61
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.5e-13 Score=99.86 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=49.1
Q ss_pred CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCC
Q 041252 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSV 119 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 119 (450)
.+++.+.||||.+.+++|++++|||+||+.||.+|+..+...||.|+.++...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 5677899999999999999999999999999999997667889999998876543
No 62
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=1.7e-13 Score=113.86 Aligned_cols=67 Identities=15% Similarity=0.330 Sum_probs=61.2
Q ss_pred CCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHHHhc
Q 041252 67 PSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWFSQK 136 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~~~ 136 (450)
.+++.||||.++|.+||++ +|||+||+.||.+|+. ..||.|+.++...++.+|..+.++++.|....
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 3568899999999999999 9999999999999987 67999999998889999999999999887654
No 63
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.37 E-value=9.5e-14 Score=114.99 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=61.0
Q ss_pred CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC-------CCCcchHHHHHHHHHHHHh
Q 041252 67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD-------DSVTPNKTLYHLIHTWFSQ 135 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~-------~~l~~n~~L~~~I~~w~~~ 135 (450)
.++|.||||.+.|.+|++++|||+||+.||.+|+..+...||.|+..+.. ..+..|..+...|+.|...
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~ 88 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR 88 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence 34689999999999999999999999999999998767889999998753 6677899999999998654
No 64
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=7.7e-14 Score=108.76 Aligned_cols=64 Identities=20% Similarity=0.496 Sum_probs=56.4
Q ss_pred CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc-----CCCCCCCcCCcCCCCCCcchHHHHHH
Q 041252 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL-----GRYTCPTTMQELWDDSVTPNKTLYHL 128 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~-----~~~~cP~~~~~l~~~~l~~n~~L~~~ 128 (450)
.+.+.+.||||.+.+.+|++++|||+||+.||.+|+.. +...||.|+.++...++.+|..++++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 56678999999999999999999999999999999976 36789999999998889998766543
No 65
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.36 E-value=2e-13 Score=120.44 Aligned_cols=71 Identities=23% Similarity=0.429 Sum_probs=61.6
Q ss_pred CCCCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCC-CCCCcchHHHHHHHHHHHHh
Q 041252 65 EIPSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELW-DDSVTPNKTLYHLIHTWFSQ 135 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~-~~~l~~n~~L~~~I~~w~~~ 135 (450)
.+.+.+.||||.+.|.+|+++ +|||+||+.||.+|+..++..||.|+.++. ...+.+|..+.++|..|...
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 345678999999999999987 999999999999999977888999999984 46789999999999988553
No 66
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.36 E-value=5.4e-13 Score=101.27 Aligned_cols=59 Identities=27% Similarity=0.381 Sum_probs=49.8
Q ss_pred cCCCCeeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhcC-CCCCCCcCCcCC-CCCCcch
Q 041252 64 AEIPSVFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSLG-RYTCPTTMQELW-DDSVTPN 122 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~-~~~l~~n 122 (450)
..+++++.||||.++|.+||+++ |||+||+.||.+|+... ...||.|+.++. .+.+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 46678899999999999999999 99999999999999863 468999999753 3455555
No 67
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=7.6e-13 Score=99.84 Aligned_cols=57 Identities=19% Similarity=0.319 Sum_probs=51.1
Q ss_pred CCCCeeeCcCCCCCCCCCeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcch
Q 041252 65 EIPSVFVCPISLEPMQDPVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPN 122 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n 122 (450)
.+.+++.||||.+.|.||+++ +|||+||+.||.+|+.. ...||.|+.++...++.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 456789999999999999997 99999999999999987 6889999999988777665
No 68
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.33 E-value=6.5e-13 Score=109.28 Aligned_cols=69 Identities=19% Similarity=0.432 Sum_probs=59.5
Q ss_pred CCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcC--CCCCCCcCCcCCCCCCcchHHHHHHHHHHHH
Q 041252 66 IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLG--RYTCPTTMQELWDDSVTPNKTLYHLIHTWFS 134 (450)
Q Consensus 66 ~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~~ 134 (450)
+.+.+.||||.+.+.+|++++|||+||+.||.+|+..+ ...||.|+.++....+.+|..+.+.++.+..
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999853 3589999999998899999877777776654
No 69
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.32 E-value=7.2e-13 Score=113.31 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=51.8
Q ss_pred CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHHH
Q 041252 67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTWF 133 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w~ 133 (450)
.+++.||||.+.|.|||+++|||+||+.||.+|+.. +.+||.|+.++... .+|..+...|+.+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 356889999999999999999999999999999986 67899999987543 23455555555554
No 70
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.5e-12 Score=97.20 Aligned_cols=55 Identities=24% Similarity=0.520 Sum_probs=48.3
Q ss_pred CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc--CCCCCCCcCCcCCCCCC
Q 041252 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL--GRYTCPTTMQELWDDSV 119 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~--~~~~cP~~~~~l~~~~l 119 (450)
.+.+++.||||.+.+.+|++++|||+||+.||.+|+.. +...||.|+.++...++
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 56778999999999999999999999999999999973 46689999998876543
No 71
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.28 E-value=4.5e-13 Score=114.74 Aligned_cols=68 Identities=15% Similarity=0.301 Sum_probs=57.3
Q ss_pred cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC---------CCCcchHHHHHHHHH
Q 041252 64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD---------DSVTPNKTLYHLIHT 131 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~---------~~l~~n~~L~~~I~~ 131 (450)
..++++|.||||.++|.+||+++|||+||+.||.+|+..+..+||.|+.++.. ..+.+|..+++.|..
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 36778999999999999999999999999999999999766789999986432 245688888777754
No 72
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.27 E-value=1.5e-12 Score=115.45 Aligned_cols=69 Identities=20% Similarity=0.385 Sum_probs=62.6
Q ss_pred cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHHHHHHHHH
Q 041252 64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTLYHLIHTW 132 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L~~~I~~w 132 (450)
..+++.|.||||.++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.+|..+.+.|.++
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 367889999999999999999999999999999999987566999999999888899999888888764
No 73
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.26 E-value=1.6e-12 Score=107.74 Aligned_cols=65 Identities=18% Similarity=0.381 Sum_probs=55.1
Q ss_pred CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCc-chHHHHHHHHHH
Q 041252 68 SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVT-PNKTLYHLIHTW 132 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~-~n~~L~~~I~~w 132 (450)
++|.||||.++|.||++++|||+||+.||.+|+..+..+||.|+.++...++. ++..+.+.+..+
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 46889999999999999999999999999999997667899999998876654 456666666544
No 74
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=2.2e-12 Score=95.19 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=48.8
Q ss_pred CeeeCcCCCC-CCCCC----eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcch
Q 041252 68 SVFVCPISLE-PMQDP----VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPN 122 (450)
Q Consensus 68 ~~~~Cpi~~~-~m~dP----v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n 122 (450)
+++.||||.+ .+.+| ++++|||+||+.||.+|+..+...||.|+.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 4678999999 99999 5789999999999999998777889999999988777665
No 75
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5.1e-12 Score=92.60 Aligned_cols=46 Identities=28% Similarity=0.578 Sum_probs=41.6
Q ss_pred CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc--CCCCCCCc
Q 041252 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL--GRYTCPTT 110 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~--~~~~cP~~ 110 (450)
.+.+++.||||.+.+.+|++++|||+||+.||.+|+.. +...||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 56778999999999999999999999999999999985 45689987
No 76
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.23 E-value=6.3e-10 Score=101.32 Aligned_cols=190 Identities=15% Similarity=0.058 Sum_probs=153.4
Q ss_pred hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhh
Q 041252 190 EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPE 269 (450)
Q Consensus 190 ~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~ 269 (450)
.+.++.|+..|.+. +..++..|+..|..+.. ..+++.|+.+|.+++..+|..|+.+|..+..
T Consensus 18 ~~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 45689999999875 78999999999987542 5789999999999999999999999988742
Q ss_pred HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh
Q 041252 270 IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPE 349 (450)
Q Consensus 270 ~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e 349 (450)
...++.|+.+|.++ ++.++..++.+|..+.. .++++.|+.+|.+.++.++..|+.+|..+..
T Consensus 80 ----~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 24568899999886 68889999999988753 3578999999999999999999999998853
Q ss_pred hHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041252 350 GKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKL 429 (450)
Q Consensus 350 ~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ 429 (450)
...++.|++++.+.++.++..|+.+|..+.. ..+++.|..+++++ ++.+|..|...|..
T Consensus 142 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 3578899999988889999999999988742 23567788888887 78999999999999
Q ss_pred HHhhcCC
Q 041252 430 CSLNYTD 436 (450)
Q Consensus 430 ls~~~~~ 436 (450)
+..+..+
T Consensus 201 ~~~~~~~ 207 (211)
T 3ltm_A 201 HKSFNHH 207 (211)
T ss_dssp -------
T ss_pred cCCCCCC
Confidence 8877544
No 77
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.20 E-value=1.3e-09 Score=103.76 Aligned_cols=197 Identities=14% Similarity=0.058 Sum_probs=148.5
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
..++.|+..|.+.+..+|..|+..|..+. ..+.++.|+.+|.+. +..++..|+.+|..+...+....
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~d~-~~~vR~~A~~aL~~l~~~~~~~~- 89 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDK-NYIRRDIGAFILGQIKICKKCED- 89 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCCTTTHH-
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccC-----------CchHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccccch-
Confidence 45788999999988999999999998774 123578899999875 77899999999988764322111
Q ss_pred ccCCCchHHHH-HHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252 229 LMQPAKVSLLV-DMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN 307 (450)
Q Consensus 229 i~~~g~i~~Lv-~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~ 307 (450)
..++.|. .+++++++.+|..|+.+|..+...+.. ....+++.|+.+++++ ++.++..++.+|.++..
T Consensus 90 ----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~-----~~~~~~~~L~~~l~d~-~~~vR~~a~~aL~~~~~-- 157 (280)
T 1oyz_A 90 ----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI-----YSPKIVEQSQITAFDK-STNVRRATAFAISVIND-- 157 (280)
T ss_dssp ----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC----
T ss_pred ----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc-----ccHHHHHHHHHHhhCC-CHHHHHHHHHHHHhcCC--
Confidence 1233443 245677999999999999998643321 1345678888888876 68888899999888753
Q ss_pred HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhc
Q 041252 308 EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSIC 387 (450)
Q Consensus 308 ~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 387 (450)
.++++.|+.+|.+.+..++..|+.+|..+.... ..+++.|++++...++.++..|+.+|..+.
T Consensus 158 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 --------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 358999999999999999999999998885321 245678888888888888998888888765
No 78
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.20 E-value=5.7e-10 Score=101.59 Aligned_cols=188 Identities=16% Similarity=0.075 Sum_probs=153.6
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
..++.|+..|++.+..+|..|+..|..+. ...+++.|+.+|.+. +..++..|+.+|..+.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~-----------~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDE-DAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCS-CHHHHHHHHHHHHHHC--------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------CccHHHHHHHHHcCC-CHHHHHHHHHHHHhhC--------
Confidence 56888999999999999999999888653 235689999999875 7889999999998764
Q ss_pred ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH
Q 041252 229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE 308 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~ 308 (450)
..+.++.|+.+|.+.++.+|..|+.+|..+.. ...++.|+.++.++ ++.++..++.+|.++..
T Consensus 79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE-DWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC---
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC---
Confidence 35678999999999999999999999998842 23568899999876 68899999999998853
Q ss_pred HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252 309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK 388 (450)
Q Consensus 309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 388 (450)
..+++.|+.++.+.++.++..|+.+|..+.. ..+++.|.+++...++.+++.|..+|..+..
T Consensus 142 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 142 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 3478999999999999999999999999853 3467788899988899999999999988876
Q ss_pred cCc
Q 041252 389 IAP 391 (450)
Q Consensus 389 ~~~ 391 (450)
...
T Consensus 204 ~~~ 206 (211)
T 3ltm_A 204 FNH 206 (211)
T ss_dssp ---
T ss_pred CCC
Confidence 553
No 79
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.18 E-value=8e-12 Score=93.78 Aligned_cols=57 Identities=18% Similarity=0.328 Sum_probs=50.5
Q ss_pred CCCCeeeCcCCCCCCCCC-------eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcch
Q 041252 65 EIPSVFVCPISLEPMQDP-------VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPN 122 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dP-------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n 122 (450)
...+++.||||.+.|.+| ++++|||+||+.||.+|+.. +.+||.|+.++...++.++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence 445678999999999999 89999999999999999987 5789999999988777765
No 80
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.5e-11 Score=87.18 Aligned_cols=46 Identities=22% Similarity=0.637 Sum_probs=41.0
Q ss_pred CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc--CCCCCCCc
Q 041252 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL--GRYTCPTT 110 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~--~~~~cP~~ 110 (450)
.+.+.+.||||.+.+.+|++++|||+||+.||.+|+.. +...||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45667899999999999999999999999999999764 46789987
No 81
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.6e-11 Score=94.18 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=47.5
Q ss_pred cCCCCeeeCcCCCCCCCC----CeeCCCCCcccHHHHHHHHhcC--CCCCCCcCCcCCCC
Q 041252 64 AEIPSVFVCPISLEPMQD----PVTLCTGQTYERSNILKWFSLG--RYTCPTTMQELWDD 117 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~d----Pv~~~~g~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~ 117 (450)
..+.+.+.||||.+.|.+ |++++|||+||+.||.+|+... ...||.|+.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 456778999999999999 9999999999999999999864 47899999987653
No 82
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.13 E-value=2.1e-09 Score=97.00 Aligned_cols=184 Identities=16% Similarity=0.068 Sum_probs=153.0
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
+..+.++..|++.+..+|..|+..|..+.. .+.++.|+.+|.+. +..++..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~-------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE-DAWVRRAAADALGQIG-------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCC-CHHHHHHHHHHHHhhC--------
Confidence 457789999999999999999999886531 35689999999765 7889999999998764
Q ss_pred ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH
Q 041252 229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE 308 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~ 308 (450)
....++.|+.+|.+.++.+|..|+.+|..+.. ...++.|+.++.++ ++.++..++.+|..+..
T Consensus 74 --~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 74 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE-DWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTC---
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC---
Confidence 24679999999999999999999999998742 23568888888876 68889999999988753
Q ss_pred HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhc
Q 041252 309 VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSIC 387 (450)
Q Consensus 309 ~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 387 (450)
.++++.|+.++.+.++.++..|+.+|..+.. ..+++.|.+++...++.+++.|..+|..+.
T Consensus 137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999842 346778888998889999999999987764
No 83
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.2e-11 Score=91.43 Aligned_cols=50 Identities=22% Similarity=0.203 Sum_probs=44.7
Q ss_pred CCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 66 IPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 66 ~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
..+.+.||||++.+.+|++++|||+||+.||.+|+.. ..+||.|+.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 3457899999999999999999999999999999986 5789999988754
No 84
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.10 E-value=5.2e-09 Score=94.40 Aligned_cols=184 Identities=16% Similarity=0.072 Sum_probs=152.5
Q ss_pred CChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhH
Q 041252 191 GGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEI 270 (450)
Q Consensus 191 G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~ 270 (450)
+..+.++.+|.+. +..++..|+.+|..+.. ...++.|+.+|.++++.+|..|+.+|..+..
T Consensus 14 ~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCC-CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 4578899999886 78999999999986543 4679999999999999999999999988732
Q ss_pred hhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhh
Q 041252 271 VSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEG 350 (450)
Q Consensus 271 ~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~ 350 (450)
...++.|+.+|.++ ++.++..++.+|..+.. ..+++.|+.+|.+.++.++..|+.+|..+..
T Consensus 75 ---~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 24578889999886 68889999999988753 3478899999999999999999999998853
Q ss_pred HHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252 351 KLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLC 430 (450)
Q Consensus 351 r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~l 430 (450)
...++.|++++.+.++.++..|+.+|..+.. ..+++.|..+++++ ++.+|..|...|..+
T Consensus 137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETG-TGFARKVAVNYLETH 196 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 4678999999998889999999999988732 12567788888887 789999999998875
Q ss_pred H
Q 041252 431 S 431 (450)
Q Consensus 431 s 431 (450)
.
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 85
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.09 E-value=2.1e-11 Score=89.38 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=47.9
Q ss_pred CeeeCcCCCCCCCCC-------eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcch
Q 041252 68 SVFVCPISLEPMQDP-------VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPN 122 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dP-------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n 122 (450)
+++.||||.+.+.+| ++++|||+|++.||.+|+.. +.+||.|+.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 467899999999998 78999999999999999997 6789999999887776654
No 86
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=4.9e-11 Score=88.82 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=45.5
Q ss_pred CCCCeeeCcCCCCCCCCC-------eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 65 EIPSVFVCPISLEPMQDP-------VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dP-------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
..++.+.||||.+.+.+| ++++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 456778999999999998 88999999999999999997 6789999988753
No 87
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.07 E-value=1.2e-10 Score=88.86 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=46.1
Q ss_pred CCCCeeeCcCCCCCC--CCCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCC
Q 041252 65 EIPSVFVCPISLEPM--QDPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELWDDSV 119 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m--~dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 119 (450)
...+++.||||.+.+ .||++.+ |||+||+.||.+|+..+...||.||+++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456789999999998 4677766 999999999999998767889999999876543
No 88
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.05 E-value=1.2e-10 Score=89.12 Aligned_cols=57 Identities=21% Similarity=0.394 Sum_probs=48.2
Q ss_pred CCCCeeeCcCCCCCCCCC---eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcch
Q 041252 65 EIPSVFVCPISLEPMQDP---VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPN 122 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dP---v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n 122 (450)
.....+.||||++.|.+| ++++|||+|++.||.+|+.. +.+||.|+.++....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 344578899999999977 45699999999999999986 5789999999987777665
No 89
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.99 E-value=1.3e-08 Score=96.62 Aligned_cols=198 Identities=12% Similarity=0.013 Sum_probs=144.9
Q ss_pred HhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh
Q 041252 188 VDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR 267 (450)
Q Consensus 188 ~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~ 267 (450)
...+.++.|+..|.+. +..++..|+.+|.++. ..+.++.|+.+|.++++.+|..|+.+|..+.......
T Consensus 20 ~~~~~i~~L~~~L~~~-~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDH-NSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HHTSCHHHHHHHTTCS-SHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHHhhHHHHHHHHHcC-CHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 3456799999999875 7889999999999875 2457899999999999999999999999885332211
Q ss_pred hhHhhhhhHHHHHHH-HHhcCCCccchhHHHHHHHHhcc-ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252 268 PEIVSSHRLLIGLMR-LVKNKRHPNGILPGLSLLRSICL-LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS 345 (450)
Q Consensus 268 ~~~~~~~g~l~~Lv~-lL~~~~~~~~~~~al~aL~~Ls~-~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~ 345 (450)
..+++.|.. +++++ ++.++..++.+|.++.. ++.. ...+++.|+.+|.+.++.++..|+.+|..+.
T Consensus 89 ------~~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 89 ------DNVFNILNNMALNDK-SACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp ------HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred ------hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 123444543 34444 67889999999999873 2211 1235789999999999999999999998775
Q ss_pred CChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHH
Q 041252 346 SLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAE 425 (450)
Q Consensus 346 ~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~ 425 (450)
. ..+++.|++++.+.+..++..|+.+|..+....+ .+++.|..++.++ ++.+|..|..
T Consensus 157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~----------~~~~~L~~~l~d~-~~~vR~~A~~ 214 (280)
T 1oyz_A 157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS----------DIRDCFVEMLQDK-NEEVRIEAII 214 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH----------HHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH----------HHHHHHHHHhcCC-CHHHHHHHHH
Confidence 3 3589999999999899999999999988853321 2345555665554 5666666666
Q ss_pred HHHHH
Q 041252 426 LLKLC 430 (450)
Q Consensus 426 lL~~l 430 (450)
.|..+
T Consensus 215 aL~~~ 219 (280)
T 1oyz_A 215 GLSYR 219 (280)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66554
No 90
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.95 E-value=5.1e-10 Score=83.06 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=42.4
Q ss_pred CeeeCcCCCCCCCCC-eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 68 SVFVCPISLEPMQDP-VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dP-v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
....||||.+.+.+| ++++|||+||+.||.+|+.. +.+||.|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 356799999999998 67899999999999999986 5789999988753
No 91
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.92 E-value=7e-10 Score=78.58 Aligned_cols=47 Identities=26% Similarity=0.400 Sum_probs=41.5
Q ss_pred CeeeCcCCCCCCCC----CeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 68 SVFVCPISLEPMQD----PVTLCTGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 68 ~~~~Cpi~~~~m~d----Pv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
+++.||||.+.+.+ |++++|||+|++.||.+|+..+ .+||.|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 45789999999977 7889999999999999999974 88999998764
No 92
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.91 E-value=2.1e-08 Score=110.50 Aligned_cols=277 Identities=14% Similarity=0.094 Sum_probs=191.7
Q ss_pred hhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHH----hhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCC
Q 041252 147 VQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMV----DEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLD 222 (450)
Q Consensus 147 ~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~----~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~ 222 (450)
+...++.++..+.+.+...+..|+..|..++...+..-..-. -...++.++..+++. +..++..|+.+|.++...
T Consensus 126 wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 126 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTT
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhc
Confidence 445688889999888888999999999999976432211000 123467777777764 788999999999886644
Q ss_pred chhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHH
Q 041252 223 SESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRS 302 (450)
Q Consensus 223 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~ 302 (450)
......-.-...++.+...+.+++.++|..|+.+|..|+......-. -.-.++++.++.++.+. ++.++..|+..+.+
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~-~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~ 282 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL-PHMHNIVEYMLQRTQDQ-DENVALEACEFWLT 282 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG-GGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHH-HHHHHHHHHHHHHccCC-cHHHHHHHHHHHHH
Confidence 22111111135788888888889999999999999999865432110 01135777888887775 67789999999999
Q ss_pred hccChHHHHHHHh--cCCHHHHHHhc-----------CC-----------CChhHHHHHHHHHHHhcCChhhHHHHhccC
Q 041252 303 ICLLNEVRSLVVS--IGAVPQLVELL-----------PS-----------LDPDCLQLALCILDALSSLPEGKLALKDCA 358 (450)
Q Consensus 303 Ls~~~~~~~~iv~--~G~v~~Lv~lL-----------~~-----------~~~~~~~~al~~L~~L~~~~e~r~~i~~~~ 358 (450)
++.....+..+.. ...+|.++..+ .+ .+-.++..|..+|..|+.... ..+..
T Consensus 283 l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~-- 358 (852)
T 4fdd_A 283 LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP-- 358 (852)
T ss_dssp HTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH--
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH--
Confidence 9866544332211 24567777776 22 122468888899998886432 12332
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 359 NTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 359 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
..++.+.+.+.+.+...++.|+.+|.+++....+.. . -.-.++++.|+..+.+. ++.+|..|...+..++..
T Consensus 359 ~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~-~-~~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM-I-PYLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH-G-GGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHH-H-HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence 467788888888889999999999999998765321 1 12246788888888776 799999999998887765
No 93
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=2.7e-10 Score=85.17 Aligned_cols=52 Identities=17% Similarity=0.334 Sum_probs=45.7
Q ss_pred CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCC
Q 041252 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDS 118 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 118 (450)
.+.+.+.||||.+.+.+ ++++|||+||+.||.+|+.. ..+||.|+.++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 45567899999999999 99999999999999999985 788999998876543
No 94
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.90 E-value=3.1e-10 Score=95.89 Aligned_cols=55 Identities=18% Similarity=0.353 Sum_probs=48.3
Q ss_pred CCeeeCcCCCCCCCCC-------eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcch
Q 041252 67 PSVFVCPISLEPMQDP-------VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPN 122 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dP-------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n 122 (450)
++++.||||.+.|.+| ++++|||+||+.||.+|+.. ..+||.|++.+....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 4678999999999999 99999999999999999986 5689999999877665443
No 95
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=3.9e-10 Score=80.37 Aligned_cols=46 Identities=13% Similarity=0.023 Sum_probs=40.6
Q ss_pred CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
.+.+.||||.+.+.+|++++|||+||+.||.+| ...||.|+.++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 356889999999999999999999999999884 5689999988653
No 96
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.89 E-value=1.1e-09 Score=77.51 Aligned_cols=47 Identities=19% Similarity=0.412 Sum_probs=41.7
Q ss_pred CCeeeCcCCCCCCCC---CeeCC-CCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252 67 PSVFVCPISLEPMQD---PVTLC-TGQTYERSNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d---Pv~~~-~g~ty~r~~I~~~~~~~~~~cP~~~~~l 114 (450)
.+...||||.+.+.+ +++++ |||.|++.||.+|+.. +.+||.|+.++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 456789999999998 88887 9999999999999986 67899999875
No 97
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.3e-09 Score=82.31 Aligned_cols=51 Identities=22% Similarity=0.488 Sum_probs=43.8
Q ss_pred CCCCeeeCcCCCCCCCCCeeC---CCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 65 EIPSVFVCPISLEPMQDPVTL---CTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~---~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
+...+..||||++.|.+|..+ +|||+|++.||.+|+.. +.+||.|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 445678899999999988654 99999999999999997 5689999998764
No 98
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.87 E-value=2.2e-09 Score=79.82 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=42.9
Q ss_pred CCCCeeeCcCCCCCCC---CCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 65 EIPSVFVCPISLEPMQ---DPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~---dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
.......||||.+.+. +|++++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 3445678999999885 4678999999999999999997 5679999988754
No 99
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.86 E-value=2.7e-09 Score=87.78 Aligned_cols=62 Identities=13% Similarity=0.249 Sum_probs=48.0
Q ss_pred HHHHHhh-hccCCCCeeeCcCCCCCCCCCe------------------eCCCCCcccHHHHHHHHhc----CCCCCCCcC
Q 041252 55 KKMIAEL-DLAEIPSVFVCPISLEPMQDPV------------------TLCTGQTYERSNILKWFSL----GRYTCPTTM 111 (450)
Q Consensus 55 ~~~~~~~-~~~~~p~~~~Cpi~~~~m~dPv------------------~~~~g~ty~r~~I~~~~~~----~~~~cP~~~ 111 (450)
++++... +....+.+..||||++.|.+|+ +++|||.|++.||.+|+.. .+.+||.|+
T Consensus 10 ~~~i~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR 89 (114)
T 1v87_A 10 EQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCK 89 (114)
T ss_dssp HHHHHHHEEECSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTC
T ss_pred HHHHHHHHHhccCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCC
Confidence 3444442 3344556779999999998886 7899999999999999963 356899999
Q ss_pred CcCCC
Q 041252 112 QELWD 116 (450)
Q Consensus 112 ~~l~~ 116 (450)
..+..
T Consensus 90 ~~~~~ 94 (114)
T 1v87_A 90 TIYGE 94 (114)
T ss_dssp CBSSS
T ss_pred CccCC
Confidence 88754
No 100
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.85 E-value=2.5e-08 Score=107.20 Aligned_cols=194 Identities=15% Similarity=0.154 Sum_probs=144.4
Q ss_pred ChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHH-HhcCCCHHHHHHHHHHHHHHhccC-CChhh
Q 041252 192 GVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD-MLNEGSVETKINCTRLIEKLMEEK-DFRPE 269 (450)
Q Consensus 192 ~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~aa~~L~~La~~~-~~~~~ 269 (450)
.|.+++..|++. +...+..|+.+|.+|+.+++++..+...++|..++. +|...+.++|..|+++|++|+... .....
T Consensus 35 ~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 456677788875 789999999999999998899999999999887655 577789999999999999998543 22333
Q ss_pred HhhhhhHHHHHHHHHhcC------CCc--------------cchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCC
Q 041252 270 IVSSHRLLIGLMRLVKNK------RHP--------------NGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPS 328 (450)
Q Consensus 270 ~~~~~g~l~~Lv~lL~~~------~~~--------------~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~ 328 (450)
.+...|++++|..+++.. ..+ .+..+++.+|++|| .+.+....+.+.|+++.|+.+|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 456778999999988631 000 12235778999999 566677788889999999999833
Q ss_pred ---CChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHH--HHHHHhcCChHHHHHHHHHHHHhc
Q 041252 329 ---LDPDCLQLALCILDALSSL-PEGKLALKDCANTIPN--TVRLLMRVSEDCTQYALSILWSIC 387 (450)
Q Consensus 329 ---~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~--Lv~lL~~~s~~~~e~A~~~L~~L~ 387 (450)
...++...|+.+|..|+.. ++....+.+ .+.... ++-.+...+...+..++++|+|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITD-DQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-CCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHh-cchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 3568999999999999965 666677776 443322 222223445555677889999974
No 101
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.85 E-value=3.7e-08 Score=108.49 Aligned_cols=270 Identities=11% Similarity=0.047 Sum_probs=180.8
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL 229 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i 229 (450)
.++.++..+.+.+.++|..|++.|..++...+..-.... .+.++.++.++++. +..++..|+..+..++.....+..+
T Consensus 216 ~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~ 293 (852)
T 4fdd_A 216 FIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVL 293 (852)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHH
Confidence 345566666777888999999999999976553211111 14577788888765 6789999999999988765444432
Q ss_pred cC--CCchHHHHHHh-----------cC-----------CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHh
Q 041252 230 MQ--PAKVSLLVDML-----------NE-----------GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVK 285 (450)
Q Consensus 230 ~~--~g~i~~Lv~lL-----------~~-----------~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~ 285 (450)
.. ...++.++..+ .. .+..+|..|+.+|..|+.... ..++ ..+++.+..++.
T Consensus 294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~--~~l~~~l~~~l~ 369 (852)
T 4fdd_A 294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL--PHILPLLKELLF 369 (852)
T ss_dssp TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH--HHHHHHHHHHhc
Confidence 11 23456666655 22 112358889999999975432 1121 246777777777
Q ss_pred cCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhh--HHHHhccCCChHH
Q 041252 286 NKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEG--KLALKDCANTIPN 363 (450)
Q Consensus 286 ~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~--r~~i~~~~g~i~~ 363 (450)
+. ++..+..|+.+|.+++........-.-.++++.++.++.+.++.++..|+++|.+++..-.. ..... ...++.
T Consensus 370 ~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~ 446 (852)
T 4fdd_A 370 HH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTE 446 (852)
T ss_dssp CS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHH
T ss_pred CC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHH
Confidence 75 68899999999999986543222112246789999999999999999999999999864211 11111 256788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252 364 TVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS 431 (450)
Q Consensus 364 Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls 431 (450)
|++.+...++.+++.|+.+|.+++......... .-.++++.|+.+++.. .......+...+..+.
T Consensus 447 L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~--~l~~ll~~L~~~l~~~-~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 447 LLKRILDSNKRVQEAACSAFATLEEEACTELVP--YLAYILDTLVFAFSKY-QHKNLLILYDAIGTLA 511 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGG--GHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHh--HHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence 888888888999999999999998765432211 1246777888888765 3444444445554443
No 102
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.84 E-value=1.5e-09 Score=85.48 Aligned_cols=50 Identities=16% Similarity=0.316 Sum_probs=43.8
Q ss_pred CCCeeeCcCCCCCCCC---CeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 66 IPSVFVCPISLEPMQD---PVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 66 ~p~~~~Cpi~~~~m~d---Pv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
...+..||||.+.|.+ +++++|||.|++.||.+|+.. +.+||.|+.++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 4467889999999988 888999999999999999986 6789999988754
No 103
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.83 E-value=1.2e-08 Score=109.69 Aligned_cols=193 Identities=11% Similarity=0.124 Sum_probs=142.0
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHH-HHHhcCCCccchhHHHHHHHHhcc--ChHHH
Q 041252 234 KVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLM-RLVKNKRHPNGILPGLSLLRSICL--LNEVR 310 (450)
Q Consensus 234 ~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv-~lL~~~~~~~~~~~al~aL~~Ls~--~~~~~ 310 (450)
.|.++++.|++.+++.|..|+.+|.+|+.+...+ ..+...+++..++ .+|.+. +.+++.+|+++|+||+. ..+.+
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~-~l~~~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCR-KLLLREQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHH-HHHHHTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHH-HHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchHH
Confidence 4667888899999999999999999998754444 4455566666654 567665 68899999999999994 46789
Q ss_pred HHHHhcCCHHHHHHhcCCCC---------------------hhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHH
Q 041252 311 SLVVSIGAVPQLVELLPSLD---------------------PDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLL 368 (450)
Q Consensus 311 ~~iv~~G~v~~Lv~lL~~~~---------------------~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL 368 (450)
..+++.|++++|..+|+... ..+.+.++.+|.+||.. ++....+.. .++++.|+..|
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~l~~~L 191 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILRLLFRL 191 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHHHHHHH
Confidence 99999999999999984210 13556788999999854 666777877 79999999998
Q ss_pred hcC---ChHHHHHHHHHHHHhcccCchhHHHHHHhcChH---HHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252 369 MRV---SEDCTQYALSILWSICKIAPEECSSAAVDAGLA---AKLFLVIQSGCNPVLKQRSAELLKLCSL 432 (450)
Q Consensus 369 ~~~---s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i---~~L~~ll~s~~~~~~k~~A~~lL~~ls~ 432 (450)
... +..+...|+.+|..++..+++ ..+.+.+.|.. ..++.+..+. . ..+..++.+|.++..
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~-~~~~i~~~~~~~~~~~ll~~~~~~-~-~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNLK-VGQAITDDQETHVYDVLLKLATGT-D-PRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHTCCSSCHHHHHHHHHHSS-C-TTHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCHH-HHHHHHhcchHHHHHHHHHHhcCC-c-HHHHHHHHHHHhHhh
Confidence 653 357899999999999998863 44555565542 2333333333 3 345666677776543
No 104
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-09 Score=81.91 Aligned_cols=49 Identities=14% Similarity=0.322 Sum_probs=43.2
Q ss_pred CCeeeCcCCCCCCCCC---eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 67 PSVFVCPISLEPMQDP---VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dP---v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
.+...||||++.+.+| ++++|||.|++.||.+|+.. +.+||.|+.++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 4567899999999988 67899999999999999987 5789999988754
No 105
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.77 E-value=1.3e-06 Score=92.21 Aligned_cols=265 Identities=13% Similarity=0.088 Sum_probs=157.0
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL 229 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i 229 (450)
....++..+.+.+...|.-+.-.+..++..+++.. .-.+..+.+-|.+. +..++..|+.+|.++... +.-
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~-n~~ir~~AL~~L~~i~~~-~~~--- 119 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDP-NPLIRALAVRTMGCIRVD-KIT--- 119 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSS-SHHHHHHHHHHHHTCCSG-GGH---
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCC-CHHHHHHHHHHHHcCChH-HHH---
Confidence 45566666666666666666666666665444321 11245555666553 566777777777766421 111
Q ss_pred cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChH-
Q 041252 230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNE- 308 (450)
Q Consensus 230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~- 308 (450)
...++.+..+|.+.++.+|..|+.++..+...++. .+...++++.|..+|.++ ++.++.+|+.+|..++....
T Consensus 120 --~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~-d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 120 --EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADS-NPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp --HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCS-CHHHHHHHHHHHHHHTTSCCS
T ss_pred --HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhhCCC
Confidence 22355666777777777777777777777653322 223345667777777654 56677777777777764321
Q ss_pred ---------HHHHHHh----------------------------cCCHHHHHHhcCCCChhHHHHHHHHHHHhcC----C
Q 041252 309 ---------VRSLVVS----------------------------IGAVPQLVELLPSLDPDCLQLALCILDALSS----L 347 (450)
Q Consensus 309 ---------~~~~iv~----------------------------~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~----~ 347 (450)
.-..++. ...++.+..+|++.++.++..|+.++..+.. +
T Consensus 194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~ 273 (591)
T 2vgl_B 194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKD 273 (591)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBT
T ss_pred ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCC
Confidence 0111111 2356777778888889999999999999874 3
Q ss_pred hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCch-----------------hHHHHHHh-------c--
Q 041252 348 PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPE-----------------ECSSAAVD-------A-- 401 (450)
Q Consensus 348 ~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~-----------------~~~~~~~~-------~-- 401 (450)
++....+.. ...+.|+.++ +.++.++..|+.+|..+....++ ..+..+.+ .
T Consensus 274 ~~~~~~~~~--~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~n 350 (591)
T 2vgl_B 274 SDYYNMLLK--KLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN 350 (591)
T ss_dssp TBSHHHHHH--HTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSST
T ss_pred HHHHHHHHH--HHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhh
Confidence 454444443 4567777665 46677888888888777642211 11222221 1
Q ss_pred --ChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Q 041252 402 --GLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNY 434 (450)
Q Consensus 402 --G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~ 434 (450)
.+++.|...+.+. +...|+.+...+..++..+
T Consensus 351 v~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~ 384 (591)
T 2vgl_B 351 IAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKV 384 (591)
T ss_dssp HHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhC
Confidence 1333444444444 6777888877777776653
No 106
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.70 E-value=4.4e-07 Score=94.73 Aligned_cols=264 Identities=11% Similarity=0.096 Sum_probs=176.5
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM 230 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~ 230 (450)
++.+...+.+.+..+|..|+..|..++...+.. . ...-.++.+..+..+. +...+..|+.++..+...-... .
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~-~~~~l~~~l~~l~~~~-~~~~R~~a~~~l~~~~~~~~~~---~ 161 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGD-WFTSRTSACGLFSVCYPRVSSA---V 161 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCS-SHHHHHHHGGGHHHHTTTSCHH---H
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhcCHH---H
Confidence 444444455667789999999999998654321 1 1222356666666654 6677888888887765432111 1
Q ss_pred CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHH
Q 041252 231 QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR 310 (450)
Q Consensus 231 ~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~ 310 (450)
....++.+..++...++.+|..|+.+|..++..-... .....+++.+..+++++ ++.++..|+.+|..++..-..
T Consensus 162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~- 236 (588)
T 1b3u_A 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDE-QDSVRLLAVEACVNIAQLLPQ- 236 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHHSCH-
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCH-
Confidence 2345778888888889999999999999997543211 11245778888888876 578889999999988732111
Q ss_pred HHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 041252 311 SLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIA 390 (450)
Q Consensus 311 ~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 390 (450)
.......+|.+..++.+.+..++..++.+|..++..... ..+. ...++.+++++...++.+++.|+.+|..++...
T Consensus 237 -~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 237 -EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-EITK--TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp -HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-HHHH--HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-ccch--hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh
Confidence 112234778888889888899999999999999854211 1222 357889999999888999999999999888755
Q ss_pred chhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252 391 PEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS 431 (450)
Q Consensus 391 ~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls 431 (450)
+........-..+++.+..++++. ++.+|..+...|..+.
T Consensus 313 ~~~~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 313 SADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLS 352 (588)
T ss_dssp CTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGH
T ss_pred ChhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 432111112234556666666554 5666666665554443
No 107
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.70 E-value=3.1e-09 Score=80.24 Aligned_cols=44 Identities=14% Similarity=0.100 Sum_probs=39.8
Q ss_pred CeeeCcCCCCCCCCCeeCCCCCc-ccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 68 SVFVCPISLEPMQDPVTLCTGQT-YERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
+++.||||.+.+.+|++++|||+ ||+.|+.+| ..||.|+.++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 45789999999999999999999 999999999 779999988753
No 108
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.69 E-value=8.6e-09 Score=101.34 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=44.4
Q ss_pred CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 68 SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
....||||.+.+.+|++++|||+||+.||.+|+..+..+||.||.++..
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3578999999999999999999999999999998557889999998764
No 109
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.69 E-value=2.4e-07 Score=96.78 Aligned_cols=264 Identities=14% Similarity=0.096 Sum_probs=173.8
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccC
Q 041252 152 SELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQ 231 (450)
Q Consensus 152 ~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~ 231 (450)
+.+...+++.+..+|..|+..|..++...... ......+|.+..++... +..++..|+.+|..++..-... ...
T Consensus 167 ~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~ 240 (588)
T 1b3u_A 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDE-QDSVRLLAVEACVNIAQLLPQE--DLE 240 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHHSCHH--HHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCHH--HHH
Confidence 33445556777889999999999998643211 12345678888888765 6788888888887765321110 112
Q ss_pred CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccC--hHH
Q 041252 232 PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLL--NEV 309 (450)
Q Consensus 232 ~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~--~~~ 309 (450)
...++.+..++.+.+..+|..|+.+|..++..-.. .. ....+++.++.++++. ++.++..++.+|..++.. ++.
T Consensus 241 ~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~ 316 (588)
T 1b3u_A 241 ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EI-TKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLSADC 316 (588)
T ss_dssp HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HH-HHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--cc-chhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHhChhh
Confidence 34678888888888999999999999999743211 11 1235688899998876 688899999999988732 222
Q ss_pred HHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 041252 310 RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKI 389 (450)
Q Consensus 310 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 389 (450)
+....-...+|.+..++.+.+..++..++.+|..++..-. ..... ...+|.+..++...++.++..|+.+|..++..
T Consensus 317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-~~~~~--~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 393 (588)
T 1b3u_A 317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNTI--EHLLPLFLAQLKDECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHHH--HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-HhHHH--HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHh
Confidence 2212234567888888988889999999998888875321 12222 24678888888877788888888887777654
Q ss_pred CchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 390 APEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 390 ~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
...+ ......++.|..++.+. +..+|..+...+..+...
T Consensus 394 ~~~~----~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~ 432 (588)
T 1b3u_A 394 IGIR----QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQ 432 (588)
T ss_dssp SCHH----HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHH
T ss_pred cCHH----HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHH
Confidence 3211 11123455555555443 556666666665555443
No 110
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.68 E-value=2.6e-07 Score=93.43 Aligned_cols=278 Identities=11% Similarity=0.031 Sum_probs=183.8
Q ss_pred hhcHHHHHHHhhcc--chHHHHHHHHHHHHHHHHc-HHHHHHHHhhCChHHHHhhhCCCC-ChhhHHHHHHHHHhcCCC-
Q 041252 148 QGRASELLGTLKKV--KGQARVQALKELHQIAAAH-ASARKTMVDEGGVALISSLLGPFT-SHAVGSEAVGVLVNLTLD- 222 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~-~~~v~~~Al~~L~~Ls~~- 222 (450)
...++.++..+.+. +...+..|+..|..++.+. +..-.. .-...++.++..|.... +..++..|+.++.++...
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45678888888887 7889999999999998753 111000 01135677888887653 578999999999885432
Q ss_pred chhhh-hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh-hhHhhhhhHHHHHHHHHhcCCCccchhHHHHHH
Q 041252 223 SESKT-NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR-PEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLL 300 (450)
Q Consensus 223 ~~~k~-~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~-~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL 300 (450)
+++.. .....-.++.+...+.+.+.++|..++.+|..++...... ...+. ..+++.++..+++. ++.++..++..+
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~-~~~v~~~a~~~l 283 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSD-IDEVALQGIEFW 283 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCS-SHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-chHHHHHHHHHH
Confidence 11110 0001113566666677789999999999999997543211 11111 15677777777765 677888999988
Q ss_pred HHhccChHHHHH------------------HHh---cCCHHHHHHhcCCC-------ChhHHHHHHHHHHHhcCChhhHH
Q 041252 301 RSICLLNEVRSL------------------VVS---IGAVPQLVELLPSL-------DPDCLQLALCILDALSSLPEGKL 352 (450)
Q Consensus 301 ~~Ls~~~~~~~~------------------iv~---~G~v~~Lv~lL~~~-------~~~~~~~al~~L~~L~~~~e~r~ 352 (450)
..++........ +++ ...+|.++..|... +..++..|..+|..|+..-. .
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~ 361 (462)
T 1ibr_B 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--D 361 (462)
T ss_dssp HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--T
T ss_pred HHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--H
Confidence 888754311110 111 23566777777432 34688899999998886422 1
Q ss_pred HHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252 353 ALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL 432 (450)
Q Consensus 353 ~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~ 432 (450)
.+.. ..++.+.+.+.+.+...++.|+.+|..++.....+.... .-..+++.|+..+.+. ++.+|..|...|..+..
T Consensus 362 ~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 362 DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICE 437 (462)
T ss_dssp THHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 2332 466777778877788999999999999987543121111 1156889999999876 79999999999988887
Q ss_pred hc
Q 041252 433 NY 434 (450)
Q Consensus 433 ~~ 434 (450)
..
T Consensus 438 ~~ 439 (462)
T 1ibr_B 438 LL 439 (462)
T ss_dssp HG
T ss_pred hc
Confidence 64
No 111
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.61 E-value=1.2e-06 Score=92.55 Aligned_cols=267 Identities=16% Similarity=0.153 Sum_probs=177.8
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhh-
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT- 227 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~- 227 (450)
..++.+...|.+.++.+|..|+.+|..+...+++ .+.+.+.++.|..+|.+. +..++..|+.+|..++.+.....
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~-d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADS-NPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCS-CHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhhCCCccc
Confidence 3456688888888899999999999999876553 333457789999999865 78999999999999887643221
Q ss_pred hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc--
Q 041252 228 NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-- 305 (450)
Q Consensus 228 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-- 305 (450)
.-...+.+..|+..+...++-.+.....+|..+...++ . ....+++.+..++++. ++.++..|++++..+..
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~--~---~~~~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~~ 270 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDD--R---EAQSICERVTPRLSHA-NSAVVLSAVKVLMKFLELL 270 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH--H---HHHHHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCSC
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh--H---HHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhcc
Confidence 11124567788888887888888777777666643221 1 1245677777777765 57788899999998863
Q ss_pred --ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hh------------------h-HHHH------hcc
Q 041252 306 --LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PE------------------G-KLAL------KDC 357 (450)
Q Consensus 306 --~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e------------------~-r~~i------~~~ 357 (450)
+++....+ -..+.++|+.++. +++.++..|+.+|..+... ++ - +.++ ..
T Consensus 271 ~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~- 347 (591)
T 2vgl_B 271 PKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLAS- 347 (591)
T ss_dssp CBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCC-
T ss_pred CCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCC-
Confidence 22222222 2345577777664 6778888888888777631 10 1 1111 12
Q ss_pred CCChHHHH----HHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 358 ANTIPNTV----RLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 358 ~g~i~~Lv----~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
...+..++ +.+...+...+..++.++..++...+.. ....++.|+.++... .+.+++.++..++.+-..
T Consensus 348 ~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~------~~~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~ 420 (591)
T 2vgl_B 348 QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS------AERCVSTLLDLIQTK-VNYVVQEAIVVIRDIFRK 420 (591)
T ss_dssp SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH------HHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHH
Confidence 23344444 4444557888999999999998876422 134678889999876 566666666666665554
Q ss_pred cC
Q 041252 434 YT 435 (450)
Q Consensus 434 ~~ 435 (450)
+.
T Consensus 421 ~p 422 (591)
T 2vgl_B 421 YP 422 (591)
T ss_dssp SC
T ss_pred Cc
Confidence 44
No 112
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.60 E-value=6.9e-09 Score=87.48 Aligned_cols=55 Identities=18% Similarity=0.353 Sum_probs=48.6
Q ss_pred CCeeeCcCCCCCCCCC-------eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcch
Q 041252 67 PSVFVCPISLEPMQDP-------VTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPN 122 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dP-------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n 122 (450)
++.+.||||++.+.+| ++++|||+|+..||.+|+.. +.+||.|+.++...++.|+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 5678899999999988 88999999999999999997 6789999999887776654
No 113
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=2.6e-08 Score=75.38 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=38.6
Q ss_pred CeeeCcCCCCCCCCCeeCCCCCc-ccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 68 SVFVCPISLEPMQDPVTLCTGQT-YERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
+.+.||||.+.+.+|++++|||+ ||+.|+.+ ...||.|+.++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 45789999999999999999999 99999964 3679999998754
No 114
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.54 E-value=1.4e-08 Score=80.45 Aligned_cols=46 Identities=13% Similarity=0.223 Sum_probs=38.9
Q ss_pred CeeeCcCCCCCCCCCeeC---CCCCcccHHHHHHHHhc----C---CCCCCC--cCCc
Q 041252 68 SVFVCPISLEPMQDPVTL---CTGQTYERSNILKWFSL----G---RYTCPT--TMQE 113 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~---~~g~ty~r~~I~~~~~~----~---~~~cP~--~~~~ 113 (450)
+.|.||||.+.+.+|+++ +|||+||+.|+.+|+.. | ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 578999999999999865 69999999999999863 3 246999 8876
No 115
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=4e-08 Score=75.49 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=39.1
Q ss_pred eeeCcCCCCCCCC--------------CeeC-CCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 69 VFVCPISLEPMQD--------------PVTL-CTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 69 ~~~Cpi~~~~m~d--------------Pv~~-~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
+-.|+||++.|.+ ++++ +|||.|.+.||.+|+.. +.+||.||.++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 4569999999987 4455 59999999999999997 5799999988653
No 116
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.43 E-value=1.1e-07 Score=69.38 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=42.4
Q ss_pred CCeeeCcCCCCCCCCCeeC--CCCCc-ccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 67 PSVFVCPISLEPMQDPVTL--CTGQT-YERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~--~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
+++..|+||.+-.+|++++ +|||. ||..|+.+|+.. +..||.||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3456899999999999987 99999 899999999986 578999998764
No 117
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.40 E-value=2.3e-05 Score=83.16 Aligned_cols=252 Identities=17% Similarity=0.115 Sum_probs=176.7
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchh-hhhc
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSES-KTNL 229 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~-k~~i 229 (450)
++.+...|++.++.+|..|+.++.++...+++.- .+.++.+..+|... +..++..|+.+|..+...+.. ...+
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~~~~~~ 217 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPDMLAHF 217 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChHHHHHH
Confidence 5667778888889999999999999998776432 25678888888765 789999999999998865422 1122
Q ss_pred cCCCchHHHHHHhcC---------------CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcC-----CC
Q 041252 230 MQPAKVSLLVDMLNE---------------GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNK-----RH 289 (450)
Q Consensus 230 ~~~g~i~~Lv~lL~~---------------~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~-----~~ 289 (450)
...++.++.+|.. .++-.+.....+|..++..+... ....++.|..++... .+
T Consensus 218 --~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~-----~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 218 --RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS-----SEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp --HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH-----HHTTHHHHHHHHHTSCCSSTHH
T ss_pred --HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHHHhccccccchH
Confidence 2567888877753 37888888888888887543211 122345555555421 12
Q ss_pred ccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh
Q 041252 290 PNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM 369 (450)
Q Consensus 290 ~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~ 369 (450)
..+.-.++.++..+...+..+. .++..|..+|.+.++.++..|+.+|..++.. ...+.. .....++..+.
T Consensus 291 ~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~---~p~~~~--~~~~~i~~~l~ 360 (618)
T 1w63_A 291 NAILYETVLTIMDIKSESGLRV-----LAINILGRFLLNNDKNIRYVALTSLLKTVQT---DHNAVQ--RHRSTIVDCLK 360 (618)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH---HHHHHG--GGHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHhCCCCchHHHHHHHHHHHHhh---CHHHHH--HHHHHHHHHcc
Confidence 3456678888888766543322 3567888899888999999999999998853 122332 35678888888
Q ss_pred cCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Q 041252 370 RVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNY 434 (450)
Q Consensus 370 ~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~ 434 (450)
..+..++..|+.+|..++.... . .. ++..|+..+.+. +...|..+...+..++..+
T Consensus 361 d~d~~Ir~~alelL~~l~~~~n--v-~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 361 DLDVSIKRRAMELSFALVNGNN--I-RG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp SSCHHHHHHHHHHHHHHCCSSS--T-HH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSS
T ss_pred CCChhHHHHHHHHHHHHccccc--H-HH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHh
Confidence 8888999999999999987653 2 12 246666666665 6788888888888877764
No 118
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.39 E-value=2.2e-07 Score=74.92 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=39.7
Q ss_pred eeeCcCCCCCCCCC------------------eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 69 VFVCPISLEPMQDP------------------VTLCTGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 69 ~~~Cpi~~~~m~dP------------------v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
+-.|+||.+.|.+| +.++|||.|.+.||.+|+.. +.+||.|+.++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 45699999999987 34789999999999999997 788999998753
No 119
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.37 E-value=1.5e-07 Score=68.47 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=41.3
Q ss_pred eeeCcCCCCCCCCCeeC--CCCCc-ccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 69 VFVCPISLEPMQDPVTL--CTGQT-YERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~--~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
...|+||.+-.+||+++ +|||. ||+.|+.+|+.. +..||.||+++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 46799999999999988 99999 999999999986 578999998864
No 120
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.33 E-value=2.1e-05 Score=86.07 Aligned_cols=274 Identities=14% Similarity=0.076 Sum_probs=177.5
Q ss_pred HHHHHHHhhcc--chHHHHHHHHHHHHHHHHcHHH-HHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCc-hhh
Q 041252 151 ASELLGTLKKV--KGQARVQALKELHQIAAAHASA-RKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDS-ESK 226 (450)
Q Consensus 151 i~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~-r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~-~~k 226 (450)
++.++..+.+. +..+|..|+++|..++..-..+ .........++.+...+... +.+++..++.+|..+.... ..-
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~ 252 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYM 252 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGC
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhHHHH
Confidence 44455556655 5678999999998876421111 00011112466667776554 6788888999888866422 111
Q ss_pred hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC------------------ChhhHhh--hhhHHHHHHHHHhc
Q 041252 227 TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD------------------FRPEIVS--SHRLLIGLMRLVKN 286 (450)
Q Consensus 227 ~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~------------------~~~~~~~--~~g~l~~Lv~lL~~ 286 (450)
...+....++.++..+.+.+.+++..|..++..++.... ....... -..+++.++..+..
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~ 332 (876)
T 1qgr_A 253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK 332 (876)
T ss_dssp HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhc
Confidence 112234678888888888889999999998888864310 0001111 13467777777753
Q ss_pred ------CCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCh--hhHHHHhccC
Q 041252 287 ------KRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLP--EGKLALKDCA 358 (450)
Q Consensus 287 ------~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~--e~r~~i~~~~ 358 (450)
..+..++..++.+|..++..-.. .++ ...++.+...+.+.+..+++.|+.+|..++... +.......
T Consensus 333 ~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~-- 407 (876)
T 1qgr_A 333 QDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI-- 407 (876)
T ss_dssp CCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHH--
Confidence 12456778888999888743221 122 245667778888889999999999999999752 33333333
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhH-HHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 359 NTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEEC-SSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 359 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~-~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
..++.++..+...++.++..|+.+|.+++...+... .... -..+++.|+..+.+. +.++..|..+|..+...
T Consensus 408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE--PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHH
Confidence 578999999988889999999999999987654211 0011 124667777777653 77888888888877665
No 121
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.31 E-value=2.4e-05 Score=85.60 Aligned_cols=276 Identities=12% Similarity=0.033 Sum_probs=179.9
Q ss_pred hhcHHHHHHHhhcc--chHHHHHHHHHHHHHHHHcHHHHHHHHh--hCChHHHHhhhCCCC-ChhhHHHHHHHHHhcCCC
Q 041252 148 QGRASELLGTLKKV--KGQARVQALKELHQIAAAHASARKTMVD--EGGVALISSLLGPFT-SHAVGSEAVGVLVNLTLD 222 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~~~~-~~~v~~~Al~~L~~Ls~~ 222 (450)
...++.++..+.+. +...|..++..|..++..-. ...+.. ...++.+...+.... +..++..|+.+|.++...
T Consensus 127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45677888888887 78899999999999986521 111211 234566777776542 467889999999886532
Q ss_pred -chhh-hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh-hhHhhhhhHHHHHHHHHhcCCCccchhHHHHH
Q 041252 223 -SESK-TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR-PEIVSSHRLLIGLMRLVKNKRHPNGILPGLSL 299 (450)
Q Consensus 223 -~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~-~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~a 299 (450)
+.+- ........++.+...+.+.+.++|..+..+|..++...... ...+ ...+++.++..+.+. ++.++..++..
T Consensus 205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~-~~~v~~~al~~ 282 (876)
T 1qgr_A 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSD-IDEVALQGIEF 282 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTCS-SHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 1111 00001124677777777778999999999999997543221 1111 125667777766654 56788888888
Q ss_pred HHHhccChHH----------------------HHHHHhcCCHHHHHHhcCC-------CChhHHHHHHHHHHHhcCChhh
Q 041252 300 LRSICLLNEV----------------------RSLVVSIGAVPQLVELLPS-------LDPDCLQLALCILDALSSLPEG 350 (450)
Q Consensus 300 L~~Ls~~~~~----------------------~~~iv~~G~v~~Lv~lL~~-------~~~~~~~~al~~L~~L~~~~e~ 350 (450)
+.+++..... ..... ...++.++..|.. .+..++..|..+|..++..-.
T Consensus 283 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~- 360 (876)
T 1qgr_A 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE- 360 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-
T ss_pred HHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc-
Confidence 8888743210 00001 2346777788742 345788889999988876422
Q ss_pred HHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 041252 351 KLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLC 430 (450)
Q Consensus 351 r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~l 430 (450)
..+.. ..++.+...+.+.+..+++.|+.+|..++.....+.... .-..+++.|+..+.+. ++.+|..|...|..+
T Consensus 361 -~~~~~--~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~ 435 (876)
T 1qgr_A 361 -DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRI 435 (876)
T ss_dssp -GGGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHH
T ss_pred -HhhHH--HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 12222 456666777777788999999999999987654221112 2245788888888776 788999999988887
Q ss_pred Hhhc
Q 041252 431 SLNY 434 (450)
Q Consensus 431 s~~~ 434 (450)
....
T Consensus 436 ~~~~ 439 (876)
T 1qgr_A 436 CELL 439 (876)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 7763
No 122
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.24 E-value=1.9e-07 Score=71.22 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=38.9
Q ss_pred CeeeCcCCCCCCCCCeeCCCCCc-ccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 68 SVFVCPISLEPMQDPVTLCTGQT-YERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
+...|+||.+.+.+|++++|||. ||+.|+.+|+ .||.|+.++..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 34679999999999999999999 9999998873 89999998754
No 123
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.19 E-value=2.6e-07 Score=90.33 Aligned_cols=44 Identities=11% Similarity=0.143 Sum_probs=39.9
Q ss_pred CeeeCcCCCCCCCCCeeCCCCCc-ccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 68 SVFVCPISLEPMQDPVTLCTGQT-YERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
+++.||||.+.+.+|++++|||+ ||+.|+..| ..||.||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 46899999999999999999999 999999988 679999988653
No 124
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.19 E-value=1.7e-05 Score=80.00 Aligned_cols=236 Identities=14% Similarity=0.091 Sum_probs=154.3
Q ss_pred cHHHHHHHhhcc--chHHHHHHHHHHHHHHHHcHHHH-HHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh
Q 041252 150 RASELLGTLKKV--KGQARVQALKELHQIAAAHASAR-KTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK 226 (450)
Q Consensus 150 ~i~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~r-~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k 226 (450)
.++.++..|++. +..+|..|++++..+...-..+- ......-.++.+...+.+. +..++..++.+|..+.......
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~ 251 (462)
T 1ibr_B 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQY 251 (462)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777766 67899999999987542111000 0000111355566666554 6788999999988876432111
Q ss_pred -hhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC------------------CChhhHhh--hhhHHHHHHHHHh
Q 041252 227 -TNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK------------------DFRPEIVS--SHRLLIGLMRLVK 285 (450)
Q Consensus 227 -~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~------------------~~~~~~~~--~~g~l~~Lv~lL~ 285 (450)
...+..+.++.++..+...+.+++..|..++..++... .....++. -..+++.++..+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~ 331 (462)
T 1ibr_B 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (462)
T ss_dssp CTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHH
Confidence 11122267888888888889999999999988886432 01111111 1346677777775
Q ss_pred cC------CCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh--hHHHHhcc
Q 041252 286 NK------RHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPE--GKLALKDC 357 (450)
Q Consensus 286 ~~------~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e--~r~~i~~~ 357 (450)
.. .+..++..|..+|..|+..-.. .+. ..+++.+...|.+.+..+++.|+.+|..++.... .-....
T Consensus 332 ~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-- 406 (462)
T 1ibr_B 332 KQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-- 406 (462)
T ss_dssp CCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--
T ss_pred hcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--
Confidence 32 2346778899999998843221 122 2466788888888899999999999999997432 111112
Q ss_pred CCChHHHHHHHhcCChHHHHHHHHHHHHhcccCc
Q 041252 358 ANTIPNTVRLLMRVSEDCTQYALSILWSICKIAP 391 (450)
Q Consensus 358 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 391 (450)
...+|.++..|...++.++..|+.+|.+++....
T Consensus 407 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 4688999999998889999999999999987543
No 125
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.19 E-value=3.2e-05 Score=81.98 Aligned_cols=257 Identities=16% Similarity=0.089 Sum_probs=155.1
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL 229 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i 229 (450)
....+++.+.+.+.+.+.-..-.+..++..+++.... .+..+.+-|.+. ++.++..|+.+|.++... +.
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~-n~~vr~lAL~~L~~i~~~-~~---- 139 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHS-TQFVQGLALCTLGCMGSS-EM---- 139 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCS-SSHHHHHHHHHHHHHCCH-HH----
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCC-CHhHHHHHHHHHHhcCCH-HH----
Confidence 3455666666666666665555666666544432111 256666677664 677888888888887732 11
Q ss_pred cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHH
Q 041252 230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEV 309 (450)
Q Consensus 230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~ 309 (450)
-...++.+...|.+.++.+|..|+.++..+...+.. .+ .++++.+..+|.+. ++.++.+|+.+|..++.....
T Consensus 140 -~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---~v--~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 140 -CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---LM--EMFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp -HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---GG--GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHH
T ss_pred -HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---HH--HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChH
Confidence 134577888888888899999999998888754332 12 24566677777765 677888888888888865432
Q ss_pred HHHHHhcCCHHHHHHhcCC---------------CChhHHHHHHHHHHHhcCC-hhhHHHHh------------------
Q 041252 310 RSLVVSIGAVPQLVELLPS---------------LDPDCLQLALCILDALSSL-PEGKLALK------------------ 355 (450)
Q Consensus 310 ~~~iv~~G~v~~Lv~lL~~---------------~~~~~~~~al~~L~~L~~~-~e~r~~i~------------------ 355 (450)
..... ...+|.++.+|.+ .++-.+...+.+|..++.. ++....+.
T Consensus 213 ~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 291 (618)
T 1w63_A 213 MLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGN 291 (618)
T ss_dssp HHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHH
Confidence 11111 2456666665532 2455566666666666543 21111000
Q ss_pred ----c--------------cCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCH
Q 041252 356 ----D--------------CANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNP 417 (450)
Q Consensus 356 ----~--------------~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~ 417 (450)
+ ...++..|.+++.+.++.++..|+.+|..++...+ .+++ .....++..+.++ +.
T Consensus 292 aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-----~~~~-~~~~~i~~~l~d~-d~ 364 (618)
T 1w63_A 292 AILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH-----NAVQ-RHRSTIVDCLKDL-DV 364 (618)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH-----HHHG-GGHHHHHHGGGSS-CH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH-----HHHH-HHHHHHHHHccCC-Ch
Confidence 0 00245566666666666777777777776665433 1222 2345666666665 68
Q ss_pred HHHHHHHHHHHHHHh
Q 041252 418 VLKQRSAELLKLCSL 432 (450)
Q Consensus 418 ~~k~~A~~lL~~ls~ 432 (450)
.+|..|..+|..+..
T Consensus 365 ~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 365 SIKRRAMELSFALVN 379 (618)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHcc
Confidence 889999988876654
No 126
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.14 E-value=1.5e-05 Score=87.14 Aligned_cols=266 Identities=12% Similarity=0.065 Sum_probs=168.0
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHHc--HHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc--
Q 041252 154 LLGTLKKVKGQARVQALKELHQIAAAH--ASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL-- 229 (450)
Q Consensus 154 Lv~~L~~~~~~~~~~Al~~L~~l~~~~--~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i-- 229 (450)
+...+.+.+...|..|+..|..++... ......+ ...++.|+..+... +..++..++.+|..++..-.. .+
T Consensus 374 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~--~~~~ 448 (861)
T 2bpt_A 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAE--SIDP 448 (861)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGG--GSCT
T ss_pred HHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhh--hcCC
Confidence 444455667788999999999887532 1122222 13578888888765 678888888888876642111 11
Q ss_pred --cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccC-----CChhhHhhhhhHHHHHHHHHhcC-CCccchhHHHHHHH
Q 041252 230 --MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEK-----DFRPEIVSSHRLLIGLMRLVKNK-RHPNGILPGLSLLR 301 (450)
Q Consensus 230 --~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~-----~~~~~~~~~~g~l~~Lv~lL~~~-~~~~~~~~al~aL~ 301 (450)
.-...++.++..|.+. +.++..|+.+|.+++..- +.... .-..+++.|+.++.+. .++.++..++.+|.
T Consensus 449 ~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~--~~~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 449 QQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYN--FYPALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGG--GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHH--HHHHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 1134577888888765 899999999999997531 11111 1245678888888753 23667888999999
Q ss_pred HhccC-hHHHHHHHhcCCHHHHHHhcCC---------------CChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHH
Q 041252 302 SICLL-NEVRSLVVSIGAVPQLVELLPS---------------LDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNT 364 (450)
Q Consensus 302 ~Ls~~-~~~~~~iv~~G~v~~Lv~lL~~---------------~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~L 364 (450)
.+... +......+. ..++.+++.|.. ....++..++.+|..++.. +..-.... ...++.+
T Consensus 526 ~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l 602 (861)
T 2bpt_A 526 TMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLF 602 (861)
T ss_dssp HHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHH
T ss_pred HHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHH
Confidence 88732 221111221 245666666532 1345677888888888754 22111112 2467777
Q ss_pred HHHHhcCCh-HHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 365 VRLLMRVSE-DCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 365 v~lL~~~s~-~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
++.+...+. .+++.++.++..++....+..... . ...++.|+..+.+. ++.++..|..++..+...
T Consensus 603 ~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~-l-~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 603 FRLLEKKDSAFIEDDVFYAISALAASLGKGFEKY-L-ETFSPYLLKALNQV-DSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHH-H-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHH-H-HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHH
Confidence 888877666 789999988888876544332221 1 23778888888654 667888888887766554
No 127
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.13 E-value=2.8e-05 Score=71.96 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=134.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccC-CChhhHhhhhhHHHHHHHHHh-cCCCccchhHHHHHHHHhccChHHHHHHH
Q 041252 237 LLVDMLNEGSVETKINCTRLIEKLMEEK-DFRPEIVSSHRLLIGLMRLVK-NKRHPNGILPGLSLLRSICLLNEVRSLVV 314 (450)
Q Consensus 237 ~Lv~lL~~~~~~~~~~aa~~L~~La~~~-~~~~~~~~~~g~l~~Lv~lL~-~~~~~~~~~~al~aL~~Ls~~~~~~~~iv 314 (450)
.+.+.+.+.+...|..|+..|..+.... ..... .-..+++.|...+. +. +..++..|+.+|..|+..-.....-.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~--~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG--EYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC--CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC--CHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4777888889999999999999997652 21111 11356788888885 65 68889999999999983221110111
Q ss_pred hcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhccc-Cchh
Q 041252 315 SIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKI-APEE 393 (450)
Q Consensus 315 ~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~-~~~~ 393 (450)
-.-.+|.|++.+.+.+..+++.|..+|..+.....- + ..++.+...+.+.++.+++.++..|..+... .++.
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-----~--~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-----E--AQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-----H--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-----H--HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 123689999999999999999999999999875321 1 2467788888888899999999999995443 3332
Q ss_pred HHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252 394 CSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT 435 (450)
Q Consensus 394 ~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~ 435 (450)
....-. ...++.|+.++.+. .+.+|..|...+..+.....
T Consensus 169 ~~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 169 LNKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp CCHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcC
Confidence 111122 25788888888765 78999999998888776643
No 128
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=2.4e-06 Score=62.97 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=38.8
Q ss_pred CeeeCcCCCCCCCCCeeCCCCCc-ccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 68 SVFVCPISLEPMQDPVTLCTGQT-YERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~~g~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
+...|+||.+-..+|++++|||. ||..|+.. ...||.||.++..
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 45779999999999999999999 99999983 4789999998754
No 129
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.07 E-value=4.7e-07 Score=74.12 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=0.0
Q ss_pred eeCcCCCCCCCCCee------------------CCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 70 FVCPISLEPMQDPVT------------------LCTGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~------------------~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
-.|+||.+.|.+|.+ ++|||.|.+.||.+|+.. +.+||.|+.++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 479999999988532 489999999999999997 788999998753
No 130
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.03 E-value=0.00025 Score=77.30 Aligned_cols=276 Identities=11% Similarity=0.023 Sum_probs=173.8
Q ss_pred hhcHHHHHHHhhcc-chHHHHHHHHHHHHHHHHcH-HHHHHH--HhhCChHHHHhhhCCCC-ChhhHHHHHHHHHhcCC-
Q 041252 148 QGRASELLGTLKKV-KGQARVQALKELHQIAAAHA-SARKTM--VDEGGVALISSLLGPFT-SHAVGSEAVGVLVNLTL- 221 (450)
Q Consensus 148 ~~~i~~Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~-~~r~~i--~~~G~i~~Lv~lL~~~~-~~~v~~~Al~~L~~Ls~- 221 (450)
...++.|+..+.+. +...+..|+..|..++..-. +.| .+ .....++.+...+.... +..++..|+.+|.++..
T Consensus 133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 211 (861)
T 2bpt_A 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ-ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS-TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh-HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45577788888877 77889999999999986421 110 00 01123566666776532 56899999999887532
Q ss_pred Cchhhh-hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCC-hhhHhhhhhHHHHHHHHHhcCCCccchhHHHHH
Q 041252 222 DSESKT-NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDF-RPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSL 299 (450)
Q Consensus 222 ~~~~k~-~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~-~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~a 299 (450)
-+.+-. .......++.+...+.+++.++|..++.+|..++..... ....+. ..+++.+...+.+. ++.++..++.+
T Consensus 212 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~~-~~~vr~~a~~~ 289 (861)
T 2bpt_A 212 IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSP-NDKVASMTVEF 289 (861)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred HHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 111100 000112466677777788999999999999998754321 111111 14555566666654 57788899999
Q ss_pred HHHhccChHHH------------------HHHHhcCCHHHHHHhcCCC-------ChhHHHHHHHHHHHhcCChhhHHHH
Q 041252 300 LRSICLLNEVR------------------SLVVSIGAVPQLVELLPSL-------DPDCLQLALCILDALSSLPEGKLAL 354 (450)
Q Consensus 300 L~~Ls~~~~~~------------------~~iv~~G~v~~Lv~lL~~~-------~~~~~~~al~~L~~L~~~~e~r~~i 354 (450)
+..++...... ...+ ...++.++..|... +..++..+..+|..++..-. ..+
T Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~ 366 (861)
T 2bpt_A 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHI 366 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGG
T ss_pred HHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhH
Confidence 88887543210 1111 34678888888642 24688889999988886421 112
Q ss_pred hccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 355 KDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 355 ~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
.. ..++.+.+.+.+.+...++.|+.+|..++.....+.....+ ..+++.|+..+.+. ++.+|..+..++..+...
T Consensus 367 ~~--~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 367 LE--PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQ-SLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHH
Confidence 21 34556666666667889999999999998765312111222 24677788877766 788999988877776655
No 131
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=5.3e-06 Score=63.19 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=41.2
Q ss_pred CeeeCcCCCCCC--CCCeeCCCC-----CcccHHHHHHHHhcC-CCCCCCcCCcCCC
Q 041252 68 SVFVCPISLEPM--QDPVTLCTG-----QTYERSNILKWFSLG-RYTCPTTMQELWD 116 (450)
Q Consensus 68 ~~~~Cpi~~~~m--~dPv~~~~g-----~ty~r~~I~~~~~~~-~~~cP~~~~~l~~ 116 (450)
+...|+||++-+ .+|++++|+ |.|-+.||.+|+... ..+||.|+.++..
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 456799999877 479999996 999999999999863 4689999998764
No 132
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.01 E-value=0.00023 Score=68.37 Aligned_cols=186 Identities=15% Similarity=0.119 Sum_probs=138.9
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
-++..++..|.+++...+..++..|+.+-.++.+.-..+++.+|+..|+.+.... +...+..++.+|.+|-.+......
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccc
Confidence 4577888989888889999999999996667788888999999999999999775 788999999999999888877766
Q ss_pred cc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhh-h---------HHHHHHHHHhc--CCCccchhH
Q 041252 229 LM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSH-R---------LLIGLMRLVKN--KRHPNGILP 295 (450)
Q Consensus 229 i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~-g---------~l~~Lv~lL~~--~~~~~~~~~ 295 (450)
++ .+..|..+..++.+.+..+...|..+|..+....+.+...+... . .+..|+.+|.+ ..+.+.+.+
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 65 67899999999998899999999999999987665444443222 1 26789999973 235667777
Q ss_pred HHHHHHHhc---cChHHHHHHH----hcCCHHHHHHhcCCC--ChhHHH
Q 041252 296 GLSLLRSIC---LLNEVRSLVV----SIGAVPQLVELLPSL--DPDCLQ 335 (450)
Q Consensus 296 al~aL~~Ls---~~~~~~~~iv----~~G~v~~Lv~lL~~~--~~~~~~ 335 (450)
++..|-.+- .+.+.+..++ +.|.=..+.+.|+.. ++++++
T Consensus 277 amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 277 TVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 777666553 2233344444 345555566666554 444443
No 133
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.99 E-value=2.9e-06 Score=70.96 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=87.2
Q ss_pred hCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhh
Q 041252 190 EGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPE 269 (450)
Q Consensus 190 ~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~ 269 (450)
...++.++.+|.+. +..++..|+.+|..+.. ..++.|+.+|++.++.+|..|+.+|.++..
T Consensus 11 ~~~~~~l~~~L~~~-~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADE-NKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSS-CCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCC-CHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 34577788888765 66777777777765431 137999999999999999999999887742
Q ss_pred HhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHH
Q 041252 270 IVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDA 343 (450)
Q Consensus 270 ~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~ 343 (450)
...++.|+.+|+++ ++.++..++++|.++.. ..+++.|+.+|.+.+..++..|..+|..
T Consensus 72 ----~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ----HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 23578899999876 68899999999998862 2357899999998899999999988764
No 134
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.96 E-value=1.4e-05 Score=91.35 Aligned_cols=273 Identities=12% Similarity=0.039 Sum_probs=179.5
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL 229 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i 229 (450)
.+..++..+.+.+.+.|..|...|.+....+...-..-.....++.|+..|.+. +..++..|+.+|..+...-.. ..
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~~-~~- 83 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE-YQ- 83 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH-HH-
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCCH-HH-
Confidence 466788888899999999999999876533210000000112467788888764 778999999999887643211 00
Q ss_pred cCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh-----hhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252 230 MQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR-----PEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC 304 (450)
Q Consensus 230 ~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~-----~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls 304 (450)
-...++.|+..|.+++..+|..|+.+|..++..-... ...-....+++.|+..+.+..++.++..++.+|..++
T Consensus 84 -~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 84 -VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp -HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 0234677778887888889999999999887432211 0011234678899998874235778889999999887
Q ss_pred cC--hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCC-hHHHHHHHH
Q 041252 305 LL--NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVS-EDCTQYALS 381 (450)
Q Consensus 305 ~~--~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s-~~~~e~A~~ 381 (450)
.. ..... .-...++.|+..|.+.+..+++.|+.+|..++..... .+. ...++.+++.|.... ...+..++.
T Consensus 163 ~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 163 SRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp HHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHhccCCchhHHHHHHH
Confidence 31 10000 0123566788888888899999999999999975332 223 356888998887653 355666778
Q ss_pred HHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Q 041252 382 ILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYT 435 (450)
Q Consensus 382 ~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~ 435 (450)
++..++...+..... .-..+++.++..+++. ++.+|+.|...+..+.....
T Consensus 237 ~l~~l~~~~~~~~~~--~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGE--YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp HHHHHHHHSSGGGTT--SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhHHHHHH--HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHCh
Confidence 887777654422110 1146788888888765 67788888888887766644
No 135
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.94 E-value=0.00012 Score=66.42 Aligned_cols=213 Identities=16% Similarity=0.164 Sum_probs=147.3
Q ss_pred CcchHHHHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHc-HHHHHHHHhhCChHHHH
Q 041252 119 VTPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAH-ASARKTMVDEGGVALIS 197 (450)
Q Consensus 119 l~~n~~L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv 197 (450)
++.-..++.-+..|.-+......... ...+..++..|...++.++.+|+..|..+.+.- ...+....+. .++.++
T Consensus 6 ii~~~~lre~L~sWkiK~a~ela~~~---e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI 81 (265)
T 3b2a_A 6 PISKTELRELVLSWQILDAVSLALED---KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFI 81 (265)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHC---HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHH
T ss_pred cccHHHHHHHHHHhhHHHHHHHHHhc---hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHH
Confidence 34445788888888655322111111 234667788888888999999999999999872 2234444444 489999
Q ss_pred hhhCCCCChhhHHHHHHHHHhcCCC-chhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhH
Q 041252 198 SLLGPFTSHAVGSEAVGVLVNLTLD-SESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRL 276 (450)
Q Consensus 198 ~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~ 276 (450)
.++++. ++.+.-.|+.+|..|-.+ +-....+ .-.+..+..++.+++.-.++.|+..+..|.-... ..+.
T Consensus 82 ~llk~~-dEkval~A~r~L~~LLe~vpL~~~~y--~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------~~~V 151 (265)
T 3b2a_A 82 NALSQE-NEKVTIKALRALGYLVKDVPMGSKTF--LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------SKLV 151 (265)
T ss_dssp HTCCST-THHHHHHHHHHHHHHHTTCCBCHHHH--HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------CHHH
T ss_pred HHHhcc-chhHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------hHHH
Confidence 999775 788888888888775432 2111111 1136778888889999999999999999922221 2345
Q ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCh
Q 041252 277 LIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLP 348 (450)
Q Consensus 277 l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~ 348 (450)
+..+.+++.++ ++.++.+++++|.+++...+.... -.+++.-+-++|++.|+.+++.|+.+|..+.+.+
T Consensus 152 ~~~l~sLl~Sk-d~~vK~agl~~L~eia~~S~D~~i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 152 RTYINELVVSP-DLYTKVAGFCLFLNMLNSSADSGH--LTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHGGGCSSCCC--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCC-ChhHHHHHHHHHHHhhcccCCHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 67788888665 788999999999999853321110 1234445677888899999999999999999874
No 136
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.93 E-value=2.1e-05 Score=72.86 Aligned_cols=181 Identities=15% Similarity=0.118 Sum_probs=132.1
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhC-CCCChhhHHHHHHHHHhcCCCchhhhhcc-
Q 041252 153 ELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLG-PFTSHAVGSEAVGVLVNLTLDSESKTNLM- 230 (450)
Q Consensus 153 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~-~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~- 230 (450)
.+.+.+.+.+...|..|+..|..+...++.....- -...++.|...|. .. +..++..|+.+|..|+..- +..+.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l--~~~~~~ 94 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGL--AKRFSN 94 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHH--GGGGHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 47778888899999999999999987632210000 0123566777774 54 6788999999999887421 11221
Q ss_pred -CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cC-h
Q 041252 231 -QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LL-N 307 (450)
Q Consensus 231 -~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~-~ 307 (450)
-...++.++..+...+..+|..|..+|..+..... -..+++.|...++++ ++.++..++..|..+. .. +
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSNK-NPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCC
Confidence 14468999999998999999999999999975432 134678888888876 6889999999999954 33 2
Q ss_pred H--HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC
Q 041252 308 E--VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL 347 (450)
Q Consensus 308 ~--~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 347 (450)
+ ....+ ...+|.|+.+|.+.+.+++..|..+|..++..
T Consensus 167 ~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 167 TALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2 12222 24788999999999999999999999998854
No 137
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.81 E-value=0.0019 Score=68.26 Aligned_cols=257 Identities=16% Similarity=0.164 Sum_probs=165.9
Q ss_pred HHHHHHHh--hccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhh
Q 041252 151 ASELLGTL--KKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTN 228 (450)
Q Consensus 151 i~~Lv~~L--~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~ 228 (450)
++.+...| .+.++.+|..|+-++.++...+++. +...+.++.+..+|... +..++..|+.+|..++.++.. .
T Consensus 148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i~~~~~~--~ 221 (621)
T 2vgl_A 148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQ-HLGVVTAATSLITTLAQKNPE--E 221 (621)
T ss_dssp TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCHH--H
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhChH--H
Confidence 45567777 6678889999999999999876532 22347789999999765 788999999999987653321 1
Q ss_pred ccCCCchHHHHHHhc----CC-------------CHHHHHHHHHHHHHHhccCCChhhHhh-hhhHHHHHHHHHhcCC--
Q 041252 229 LMQPAKVSLLVDMLN----EG-------------SVETKINCTRLIEKLMEEKDFRPEIVS-SHRLLIGLMRLVKNKR-- 288 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~----~~-------------~~~~~~~aa~~L~~La~~~~~~~~~~~-~~g~l~~Lv~lL~~~~-- 288 (450)
+ ...++.++..|. .+ ++=.+.....+|..++..++. +... -...+..++..+.+..
T Consensus 222 ~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~--~~~~~l~~~L~~il~~~~~~~ks 297 (621)
T 2vgl_A 222 F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDP--AVRGRLTECLETILNKAQEPPKS 297 (621)
T ss_dssp H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSH--HHHHHHHHHHHHHHHHHHSCCSC
T ss_pred H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhhccCccc
Confidence 1 123444544442 22 456677766666666532221 1110 0123334443322110
Q ss_pred ------C--ccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCC
Q 041252 289 ------H--PNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANT 360 (450)
Q Consensus 289 ------~--~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~ 360 (450)
+ ..+.-.+..++..+...++.... ++..|..+|.+.+++++-.|+..|..++........+. .-
T Consensus 298 ~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~-----~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~---~~ 369 (621)
T 2vgl_A 298 KKVQHSNAKNAVLFEAISLIIHHDSEPNLLVR-----ACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK---TH 369 (621)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH---TT
T ss_pred ccccccchHHHHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH---HH
Confidence 1 14556777788888755544433 45678899988899999999999999987643233343 34
Q ss_pred hHHHHHHHh-cCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Q 041252 361 IPNTVRLLM-RVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNY 434 (450)
Q Consensus 361 i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~ 434 (450)
...++..|. ..+..++..|+.+|..++..+ + .. .++..|...+... +...|..+...+..|...+
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~--N-v~-----~Iv~eL~~yl~~~-d~~~~~~~v~~I~~la~k~ 435 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCDRS--N-AQ-----QIVAEMLSYLETA-DYSIREEIVLKVAILAEKY 435 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH--H-HH-----HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcChh--h-HH-----HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhc
Confidence 778888888 778899999999999998643 2 22 2455666666654 6777777777777766554
No 138
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.79 E-value=0.00031 Score=63.69 Aligned_cols=226 Identities=13% Similarity=0.145 Sum_probs=155.0
Q ss_pred ChHHHHhhhCCCCChhhHHHHHHHHHhcCCC-chhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhH
Q 041252 192 GVALISSLLGPFTSHAVGSEAVGVLVNLTLD-SESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEI 270 (450)
Q Consensus 192 ~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~ 270 (450)
.+..|..+|... |..++.+++.+|-.+-.. +.......-...++.++.++.+.+..+...|..+|..|-.+.+.-..-
T Consensus 34 ~l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 467888999765 789999999999986543 222222222567999999999999999999999999997766544433
Q ss_pred hhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhh
Q 041252 271 VSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEG 350 (450)
Q Consensus 271 ~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~ 350 (450)
+.. +..+|..+++++ ++-....++..|..|......+ +++..+.+++.|.+..++..++.+|.+++...+.
T Consensus 113 y~K--l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHH--HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHH--HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 332 447788888865 5667788988888884322222 2456788899889999999999999999975443
Q ss_pred HHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccC-chhHHHHHHhcChHHHHHHHH-HcCCCHHHHHHHHHHHH
Q 041252 351 KLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIA-PEECSSAAVDAGLAAKLFLVI-QSGCNPVLKQRSAELLK 428 (450)
Q Consensus 351 r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~~~~~~G~i~~L~~ll-~s~~~~~~k~~A~~lL~ 428 (450)
...+. +.+.-+-.+|.+.++...+.|+.+|..+.... +++..... .++....-.+. ..| .|..+.+|...--
T Consensus 184 ~~i~~---~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~--~~~~~~v~~l~~~~~-~~~~~~ka~~v~~ 257 (265)
T 3b2a_A 184 SGHLT---LILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL--LKISRIVDGLVYREG-APIIRLKAKKVSD 257 (265)
T ss_dssp CCCGG---GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH--HHHHHHHHHGGGCSS-CHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH--HHHHHHHHHHHHhcC-ChhHHHHHHHHHH
Confidence 33332 23334456667788999999999999987654 22221111 12222222333 345 7889999887766
Q ss_pred HHHhh
Q 041252 429 LCSLN 433 (450)
Q Consensus 429 ~ls~~ 433 (450)
.+-.+
T Consensus 258 ~le~~ 262 (265)
T 3b2a_A 258 LIDSV 262 (265)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 139
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.74 E-value=0.00069 Score=65.01 Aligned_cols=186 Identities=19% Similarity=0.176 Sum_probs=135.4
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHH-HhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHH
Q 041252 235 VSLLVDMLNEGSVETKINCTRLIEK-LMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLV 313 (450)
Q Consensus 235 i~~Lv~lL~~~~~~~~~~aa~~L~~-La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~i 313 (450)
+..+++.|.+++.+.+..+..-|.. ++.+.+...+++.. +++..|++++... +.+.+..+++||.+|-.+...-..+
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~-~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHS-EGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHT-THHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHh-ccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccch
Confidence 4455666777788888888888887 56677777776554 5589999999876 7889999999999999888777677
Q ss_pred Hh-cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh-hHHHHhcc------CC---ChHHHHHHHh---cCChHHHHHH
Q 041252 314 VS-IGAVPQLVELLPSLDPDCLQLALCILDALSSLPE-GKLALKDC------AN---TIPNTVRLLM---RVSEDCTQYA 379 (450)
Q Consensus 314 v~-~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e-~r~~i~~~------~g---~i~~Lv~lL~---~~s~~~~e~A 379 (450)
++ ...|..++.++.+.+..+...|+++|..++...+ +...+.+. +. -...|+.+|. ..+...+.+|
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 75 5788899999988889999999999999987644 44333321 11 2779999997 5678899999
Q ss_pred HHHHHHhcccCchhH-HHHH----HhcChHHHHHHHHHc-CCCHHHHHH
Q 041252 380 LSILWSICKIAPEEC-SSAA----VDAGLAAKLFLVIQS-GCNPVLKQR 422 (450)
Q Consensus 380 ~~~L~~L~~~~~~~~-~~~~----~~~G~i~~L~~ll~s-~~~~~~k~~ 422 (450)
+..+-.+-...+++. ...+ -+.|.-..+...+.+ ++.+..+++
T Consensus 278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 888877666555321 2222 246765666666655 345666655
No 140
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.72 E-value=1.4e-06 Score=72.97 Aligned_cols=121 Identities=10% Similarity=-0.009 Sum_probs=87.3
Q ss_pred CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHH
Q 041252 231 QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR 310 (450)
Q Consensus 231 ~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~ 310 (450)
....++.++.+|+++++.+|..|+.+|..+.. . .++.|+.+|+++ ++.++..++++|.++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~---~---------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~----- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD---E---------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD----- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS---T---------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS-----
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc---h---------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC-----
Confidence 35678888999998888888888877765521 0 148888888875 68899999999988863
Q ss_pred HHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHH
Q 041252 311 SLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWS 385 (450)
Q Consensus 311 ~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~ 385 (450)
..+++.|+.+|.+.++.++..|+.+|..+.. ..+++.|++++...+..++..|+.+|..
T Consensus 72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 1257899999988899999999999998862 3467889999988788899988887753
No 141
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00034 Score=65.20 Aligned_cols=192 Identities=7% Similarity=0.073 Sum_probs=131.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHH-HhccCCChhhHhhh-hhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh---HHH-HH
Q 041252 239 VDMLNEGSVETKINCTRLIEK-LMEEKDFRPEIVSS-HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN---EVR-SL 312 (450)
Q Consensus 239 v~lL~~~~~~~~~~aa~~L~~-La~~~~~~~~~~~~-~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~---~~~-~~ 312 (450)
-..+.+.+...|..|...|.. +..+.......... ..++..|.+.+..+.+..++..|+.+|..|+..- ... ..
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 445678899999999999999 86442211100111 3567788888843336778899999999998321 111 11
Q ss_pred HHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhc-cCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCc
Q 041252 313 VVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKD-CANTIPNTVRLLMRVSEDCTQYALSILWSICKIAP 391 (450)
Q Consensus 313 iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~-~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 391 (450)
. .-.+|.+++.+.+....+++.+..+|..++.+-+- ..... -...++.|+..|.+.+..+++.++.+|..+....+
T Consensus 102 ~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 102 V--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp H--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred H--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 1 12688999999988899999999999988863210 11100 01356678888888889999999999999887665
Q ss_pred h--hHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Q 041252 392 E--ECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNY 434 (450)
Q Consensus 392 ~--~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~ 434 (450)
. ......+....++.|..++... .+.+|++|...+-.+...-
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh
Confidence 2 1111122257889999999665 7899999999888766553
No 142
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00014 Score=67.91 Aligned_cols=187 Identities=12% Similarity=0.124 Sum_probs=129.3
Q ss_pred HHHHhhccchHHHHHHHHHHHH-HHHHcHHHHHHHHh-hCChHHHHhhh-CCCCChhhHHHHHHHHHhcCCCchhh-hhc
Q 041252 154 LLGTLKKVKGQARVQALKELHQ-IAAAHASARKTMVD-EGGVALISSLL-GPFTSHAVGSEAVGVLVNLTLDSESK-TNL 229 (450)
Q Consensus 154 Lv~~L~~~~~~~~~~Al~~L~~-l~~~~~~~r~~i~~-~G~i~~Lv~lL-~~~~~~~v~~~Al~~L~~Ls~~~~~k-~~i 229 (450)
+-..+.+.+...|..|+..|.. +..+.+.....-.+ ...+..|...+ +.. +..++..|+.+|..|+. .-+ ..+
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~-n~~v~~~A~~al~~la~--~l~~~~f 97 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA-NIQAVALAAQSVELICD--KLKTPGF 97 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHH--HHCTTTS
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHH--hcccccc
Confidence 5566788899999999999998 76443211100011 12356677777 343 56788899999988873 222 223
Q ss_pred c-C--CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhh--hhhHHHHHHHHHhcCCCccchhHHHHHHHHhc
Q 041252 230 M-Q--PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVS--SHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC 304 (450)
Q Consensus 230 ~-~--~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~--~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls 304 (450)
. . .-.++.++..+++....++..+..+|..++..-+.. ... -..+++.|+..|+++ ++.++..++.+|..+.
T Consensus 98 ~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~--~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 98 SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL--ASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASM 174 (249)
T ss_dssp CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT--CTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc--ccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHH
Confidence 2 1 336889999998888999999999999997533211 111 234788899999887 6889999999998887
Q ss_pred cC-hH--HH-HHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252 305 LL-NE--VR-SLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS 346 (450)
Q Consensus 305 ~~-~~--~~-~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~ 346 (450)
.. +. .. ...+....+|.|..+|.+.+.++++.|..+|..++.
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 32 21 11 122224688999999999999999999999998864
No 143
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.58 E-value=0.024 Score=59.84 Aligned_cols=280 Identities=15% Similarity=0.089 Sum_probs=178.1
Q ss_pred cchHHHHHHHHHHHHhcccccccCCcch-hhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHh
Q 041252 120 TPNKTLYHLIHTWFSQKYLLMKKRSEDV-QGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISS 198 (450)
Q Consensus 120 ~~n~~L~~~I~~w~~~~~~~~~~~~~~~-~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~ 198 (450)
.+|..++++..-+...-.. ...+. .-.+..+.+-|.+.++..|.-|+.+|.++. .++.-+ ..++.+..
T Consensus 85 s~~~~~Krl~YL~l~~~~~----~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~ 153 (621)
T 2vgl_A 85 SNRYTEKQIGYLFISVLVN----SNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG--SREMAE-----AFAGEIPK 153 (621)
T ss_dssp CSCHHHHHHHHHHHHHSCC----CCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHcc----CCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHH
Confidence 4677888887776665321 11111 112334555566777888888999988874 233222 24678888
Q ss_pred hh--CCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhH
Q 041252 199 LL--GPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRL 276 (450)
Q Consensus 199 lL--~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~ 276 (450)
+| .+. +.-++..|+-++..+.... ...+-..+.++.+..+|...++.++.+|..+|..++..+.. .+ ...
T Consensus 154 ~l~~~d~-~~~VRK~A~~al~kl~~~~--p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~---~~--~~~ 225 (621)
T 2vgl_A 154 ILVAGDT-MDSVKQSAALCLLRLYRTS--PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE---EF--KTS 225 (621)
T ss_dssp HHHCSSS-CHHHHHHHHHHHHHHHHHC--GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH---HH--TTH
T ss_pred HHhCCCC-CHHHHHHHHHHHHHHHHhC--hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH---HH--HHH
Confidence 88 654 6789999999888866422 22332358999999999988999999999999999765432 11 123
Q ss_pred HHHHHH----HHhcC-C-----------CccchhHHHHHHHHhcc--ChHHHHHHHhcCCHHHHHHhcCC---------C
Q 041252 277 LIGLMR----LVKNK-R-----------HPNGILPGLSLLRSICL--LNEVRSLVVSIGAVPQLVELLPS---------L 329 (450)
Q Consensus 277 l~~Lv~----lL~~~-~-----------~~~~~~~al~aL~~Ls~--~~~~~~~iv~~G~v~~Lv~lL~~---------~ 329 (450)
++.+++ ++..+ . ++-.+...+..|..++. +++.+..+.+ .++.++..+.+ .
T Consensus 226 ~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~ 303 (621)
T 2vgl_A 226 VSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHS 303 (621)
T ss_dssp HHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHH
T ss_pred HHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCccccccccc
Confidence 344444 43332 1 23456677778888774 3445554444 33334433211 1
Q ss_pred C--hhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHH
Q 041252 330 D--PDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKL 407 (450)
Q Consensus 330 ~--~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L 407 (450)
+ ..+.-.|+.++..+...++-+.. ++..|.++|.+.++.++..|+..|..++...+.. .+++ .....+
T Consensus 304 n~~~aVl~ea~~~i~~l~~~~~~~~~------~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~---~~~~-~~~~~i 373 (621)
T 2vgl_A 304 NAKNAVLFEAISLIIHHDSEPNLLVR------ACNQLGQFLQHRETNLRYLALESMCTLASSEFSH---EAVK-THIETV 373 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHH------HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH---HHHH-TTHHHH
T ss_pred chHHHHHHHHHHHHHhcCCcHHHHHH------HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH---HHHH-HHHHHH
Confidence 2 27788888888888755543333 4557888888778899999999999998876521 1232 245566
Q ss_pred HHHHH-cCCCHHHHHHHHHHHHHHH
Q 041252 408 FLVIQ-SGCNPVLKQRSAELLKLCS 431 (450)
Q Consensus 408 ~~ll~-s~~~~~~k~~A~~lL~~ls 431 (450)
+..+. ++ +..+|..|..+|..+.
T Consensus 374 ~~~L~~d~-d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 374 INALKTER-DVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HHHHTTCC-CHHHHHHHHHHHHHHC
T ss_pred HHHhccCC-CHhHHHHHHHHHHHHc
Confidence 66666 54 6788888888776554
No 144
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.48 E-value=0.0032 Score=69.37 Aligned_cols=272 Identities=13% Similarity=0.109 Sum_probs=172.1
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM 230 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~ 230 (450)
+.+++..++..+.+.+..|...|..+...+... .....+.+..|...+....+. +.|+.++..|+........+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~- 89 (986)
T 2iw3_A 16 LEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSV- 89 (986)
T ss_dssp HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTT-
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCc-
Confidence 445555565544556667777777766532111 112235667777777654222 88888888877543222111
Q ss_pred C---CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252 231 Q---PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN 307 (450)
Q Consensus 231 ~---~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~ 307 (450)
+ -+.++.+..........+|..|..++..+...-. ...+ ..++|.|+..+.+...+..+..|+.+|..|+...
T Consensus 90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~--~~a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~ 165 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN--PVAI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA 165 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSC--GGGH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCC--HHHH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 1 1457777777777778899988888888854322 1122 5678999999977545778889999999998433
Q ss_pred HHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhH----------HHHhccCCChHH--------------
Q 041252 308 EVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGK----------LALKDCANTIPN-------------- 363 (450)
Q Consensus 308 ~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r----------~~i~~~~g~i~~-------------- 363 (450)
.......=...||.+-+.+-+..++++..|..++..+|..-.|+ ..+.+ ..-+|.
T Consensus 166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~-p~~~~~~~~~l~~~tfv~~v 244 (986)
T 2iw3_A 166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD-PTEVPETVHLLGATTFVAEV 244 (986)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHC-TTHHHHHHHHHTTCCCCSCC
T ss_pred HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcC-hhhhHHHHHHhhcCeeEeee
Confidence 22222222468999999999999999999999999998642221 12222 222222
Q ss_pred -----------HHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 041252 364 -----------TVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSL 432 (450)
Q Consensus 364 -----------Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~ 432 (450)
|.+-|...+...++.++-++-|+|+.-.+..-..-.-.-.+|.|-.....-..|++|+.|...+..|..
T Consensus 245 ~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 245 TPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 222222335667788888999999865433211111235666666666666789999999998888866
Q ss_pred h
Q 041252 433 N 433 (450)
Q Consensus 433 ~ 433 (450)
.
T Consensus 325 ~ 325 (986)
T 2iw3_A 325 V 325 (986)
T ss_dssp H
T ss_pred h
Confidence 6
No 145
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.47 E-value=0.0021 Score=64.71 Aligned_cols=231 Identities=14% Similarity=0.115 Sum_probs=151.2
Q ss_pred HHHHhhcc-chHHHHHHHHHHHHHHHHcHHHHHHHHhhCC--hHHHHhhhCC----C------------CChhhHHHHHH
Q 041252 154 LLGTLKKV-KGQARVQALKELHQIAAAHASARKTMVDEGG--VALISSLLGP----F------------TSHAVGSEAVG 214 (450)
Q Consensus 154 Lv~~L~~~-~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~--i~~Lv~lL~~----~------------~~~~v~~~Al~ 214 (450)
++..|.+. ..+.+..++..|..+... +++|..+.+.++ ++.++.++.. . ..-..+.+++-
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 55556553 234455688888888754 568998887643 5666544321 1 02346788999
Q ss_pred HHHhcCCCchhhhhccCCCch--HHHHHHhcCC-CHHHHHHHHHHHHHHhccCC-Ch----hhHhhhhhHHHHHHHHHhc
Q 041252 215 VLVNLTLDSESKTNLMQPAKV--SLLVDMLNEG-SVETKINCTRLIEKLMEEKD-FR----PEIVSSHRLLIGLMRLVKN 286 (450)
Q Consensus 215 ~L~~Ls~~~~~k~~i~~~g~i--~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~-~~----~~~~~~~g~l~~Lv~lL~~ 286 (450)
+++.|+.+++....+.+.+.. +.|+.+++.. -..+..-+..+|+||.+.+. .. .+.+...++ ..++..|..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999998877777666643 6777777754 57788888999999976542 11 112222233 445566654
Q ss_pred C-C-CccchhHH-------HHHHHHhccChHHHHHHHhcC---------------------------CHHHHHHhcCC--
Q 041252 287 K-R-HPNGILPG-------LSLLRSICLLNEVRSLVVSIG---------------------------AVPQLVELLPS-- 328 (450)
Q Consensus 287 ~-~-~~~~~~~a-------l~aL~~Ls~~~~~~~~iv~~G---------------------------~v~~Lv~lL~~-- 328 (450)
. . +++..+.. -.....+++.++.+..+-+ | .+..|+++|.+
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~s-G~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDS-KLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-TCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhc-CCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence 3 2 23322211 1123344444555444432 3 66789999963
Q ss_pred --------CChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 041252 329 --------LDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICK 388 (450)
Q Consensus 329 --------~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 388 (450)
.++.+..-|+.=|..++.+ |++|..+.+ -|+=..++++|.+.+++++.+|+.++-.+..
T Consensus 409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~-lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDK-TGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH-HSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEeecccHHHHHHHCcchhHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3677888888888888865 999998877 7888999999999999999999998876544
No 146
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.46 E-value=0.00025 Score=80.94 Aligned_cols=228 Identities=9% Similarity=-0.018 Sum_probs=146.5
Q ss_pred hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhh-hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHh
Q 041252 193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKT-NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIV 271 (450)
Q Consensus 193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~-~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~ 271 (450)
++.|+.-+.+. |.+++..|...|.+....+.... .-.....++.+++.|.+.+.++|..|+.+|..++..-.. .
T Consensus 8 l~~lL~~l~s~-d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~-- 82 (1230)
T 1u6g_C 8 ISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--Y-- 82 (1230)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--H--
T ss_pred HHHHHHhcCCC-CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--H--
Confidence 45556556554 78899999888887443221100 001124578888889888999999999999999753221 1
Q ss_pred hhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc--ChHH----HHHHHhcCCHHHHHHhcC-CCChhHHHHHHHHHHHh
Q 041252 272 SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL--LNEV----RSLVVSIGAVPQLVELLP-SLDPDCLQLALCILDAL 344 (450)
Q Consensus 272 ~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~--~~~~----~~~iv~~G~v~~Lv~lL~-~~~~~~~~~al~~L~~L 344 (450)
.-..+++.|+..+.++ ++.++..++.+|..++. .+.. ...-.-...+|.|+..+. +.+..+++.|+.+|..+
T Consensus 83 ~~~~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 1134677788877765 56778888888888873 2210 001112346889999998 47889999999999998
Q ss_pred cCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHH
Q 041252 345 SSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRS 423 (450)
Q Consensus 345 ~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A 423 (450)
+.. +..-.... ...++.++..+.+.+..+++.|+.+|..++...++.. -...++.++..+.....+..|..|
T Consensus 162 ~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-----~~~~l~~l~~~L~~~~~~~~r~~a 234 (1230)
T 1u6g_C 162 LSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-----FVDLIEHLLSELSKNDSMSTTRTY 234 (1230)
T ss_dssp HHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred HHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-----HHHHHHHHHHHhccCCchhHHHHH
Confidence 842 11000011 1345566667776778999999999999988664321 234678888877665334456666
Q ss_pred HHHHHHHHhh
Q 041252 424 AELLKLCSLN 433 (450)
Q Consensus 424 ~~lL~~ls~~ 433 (450)
...+..+...
T Consensus 235 ~~~l~~l~~~ 244 (1230)
T 1u6g_C 235 IQCIAAISRQ 244 (1230)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666666554
No 147
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.26 E-value=0.055 Score=47.32 Aligned_cols=208 Identities=16% Similarity=0.152 Sum_probs=135.0
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL 229 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i 229 (450)
.+..++..|...-+.+|.+|+..+..+++.-++...-+ +.-|+.+++.+..-....+...++..++.
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~-------- 99 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAK-------- 99 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHH--------
Confidence 35678888888778899999999999887655443332 34555666543333343444444444332
Q ss_pred cCCCchHHHHHH----hcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc
Q 041252 230 MQPAKVSLLVDM----LNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL 305 (450)
Q Consensus 230 ~~~g~i~~Lv~l----L~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~ 305 (450)
..+..+..+|.+ ..-+++..|.+-..+|..++..++.. -.++...+..++.++ +..-+..++..+..+..
T Consensus 100 i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l-----~~~v~rdi~smltsk-d~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 100 EKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML-----MASIVRDFMSMLSSK-NREDKLTALNFIEAMGE 173 (253)
T ss_dssp HCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHTSCS-SHHHHHHHHHHHHTCCT
T ss_pred hCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH-----HHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhc
Confidence 123334444444 45679999999999999998766431 245667888888876 33334455555555543
Q ss_pred ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252 306 LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW 384 (450)
Q Consensus 306 ~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~ 384 (450)
|..+-+. -.+|.|..+|.+.+.-++..|+.+|.+++.. +.-|..+.+ -++-+...|+.++......|.
T Consensus 174 ---n~~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~-------kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 174 ---NSFKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK-------RLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp ---TTHHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH-------HHHHCCCSCHHHHHHHHHHHH
T ss_pred ---cCccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH-------HHHHhcCcHHHHHHHHHHHHH
Confidence 3333332 3578899999999999999999999999965 655555543 345556677777766666665
Q ss_pred Hhc
Q 041252 385 SIC 387 (450)
Q Consensus 385 ~L~ 387 (450)
.+.
T Consensus 243 rl~ 245 (253)
T 2db0_A 243 RLL 245 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 148
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.20 E-value=0.00046 Score=51.34 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=36.8
Q ss_pred eeCcCCCCCCCCCee-CCCCCcccHHHHHHHHhcC-CCCCCCcCCcCC
Q 041252 70 FVCPISLEPMQDPVT-LCTGQTYERSNILKWFSLG-RYTCPTTMQELW 115 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~-~~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~ 115 (450)
-.|+||.+++..=.. ..|||.|=..||.+||+.. ..+||.|+.+..
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 469999998874332 2699999999999999863 378999998764
No 149
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.18 E-value=0.00082 Score=65.78 Aligned_cols=257 Identities=11% Similarity=0.048 Sum_probs=140.2
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhcc
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLM 230 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~ 230 (450)
...+++.+.+.+...|.-..-.+..+++..++ .+ =++..+.+=+.+. ++-++..|+.+|.++...+-.
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~~m~----- 137 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGK-EDSYRGPAVRALCQITDSTML----- 137 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSS-CHHHHHHHHHHHHHHCCTTTH-----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCC-cHhHHHHHHHHHhcCCCHHHH-----
Confidence 44566677777777776666666666544221 11 1244555555554 678999999999988654311
Q ss_pred CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHH
Q 041252 231 QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVR 310 (450)
Q Consensus 231 ~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~ 310 (450)
....+.+...|.+.++-+|..|+-+...|....+ +.+ .+++..+-+++.+. ++.++.+|+.+|..++.++..
T Consensus 138 -~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p---e~v--~~~~~~l~~ll~d~-n~~V~~~Al~lL~ei~~~d~~- 209 (355)
T 3tjz_B 138 -QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF---DVV--KRWVNEAQEAASSD-NIMVQYHALGLLYHVRKNDRL- 209 (355)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH---HHH--HTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCHH-
T ss_pred -HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH---HHH--HHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhhchH-
Confidence 2346667777888899999999999999865443 333 25788888888876 688889999999999865421
Q ss_pred HHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 041252 311 SLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSICKI 389 (450)
Q Consensus 311 ~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 389 (450)
++..|+.-+..+.......-+.+|+.+... ++.-.... ...++.+...|.+.++.+.-.|+.++..+...
T Consensus 210 -------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~--~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~ 280 (355)
T 3tjz_B 210 -------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD--SPLFDFIESCLRNKHEMVVYEAASAIVNLPGC 280 (355)
T ss_dssp -------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------------CCCCCSSHHHHHHHHHHHTC----
T ss_pred -------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH--HHHHHHHHHHHcCCChHHHHHHHHHHHhccCC
Confidence 223334433222111122223344444332 11101111 23455666777788889998899999887552
Q ss_pred CchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCcccccccc
Q 041252 390 APEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFISKCKL 445 (450)
Q Consensus 390 ~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~i~~~~~ 445 (450)
.. . .. ..++..|..++.+. ++.+|-.|...|..+... ....++.|+.
T Consensus 281 ~~-~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~--~P~~v~~~n~ 327 (355)
T 3tjz_B 281 SA-K----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMK--HPSAVTACNL 327 (355)
T ss_dssp -------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------
T ss_pred CH-H----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHH--CcHHHHHHHH
Confidence 22 1 11 23346677777776 678888888877776655 4456666664
No 150
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.01 E-value=0.0005 Score=53.43 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=38.6
Q ss_pred eCcCCCCCCCCCe-eCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 71 VCPISLEPMQDPV-TLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 71 ~Cpi~~~~m~dPv-~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
.||+|.-....=. +++|+|.||.+|+..|.+++..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 5888887666533 789999999999999998888999999987654
No 151
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.97 E-value=0.00073 Score=48.15 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=39.0
Q ss_pred eeeCcCCCCCCCCCeeCCCCC-----cccHHHHHHHHhc-CCCCCCCcCCcCC
Q 041252 69 VFVCPISLEPMQDPVTLCTGQ-----TYERSNILKWFSL-GRYTCPTTMQELW 115 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~-----ty~r~~I~~~~~~-~~~~cP~~~~~l~ 115 (450)
.-.|.||++-..+|.+.||.. .|=++|+.+|+.. ++.+||.|+.++.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 457999998888888888653 7899999999984 5788999998764
No 152
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.89 E-value=0.13 Score=45.06 Aligned_cols=105 Identities=12% Similarity=0.087 Sum_probs=65.1
Q ss_pred CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhc-cChHH
Q 041252 231 QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSIC-LLNEV 309 (450)
Q Consensus 231 ~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls-~~~~~ 309 (450)
+...+..++.+|+.+--.++.||..++..++..-+.. -...+..|+.+++...........++++..++ ..++.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el-----~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL-----YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG-----HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH-----HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 3456778888888777788889888888887543321 13456777777765444445556667777776 34433
Q ss_pred HHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252 310 RSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS 345 (450)
Q Consensus 310 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~ 345 (450)
... .||.+..=.+-+++.++-+...+|..++
T Consensus 105 v~~-----vVp~lfanyrigd~kikIn~~yaLeeIa 135 (253)
T 2db0_A 105 VKS-----MIPVLFANYRIGDEKTKINVSYALEEIA 135 (253)
T ss_dssp HHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHH
T ss_pred HHh-----hHHHHHHHHhcCCccceecHHHHHHHHH
Confidence 222 2344555555566666666666666555
No 153
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.82 E-value=0.048 Score=53.22 Aligned_cols=238 Identities=11% Similarity=0.002 Sum_probs=139.7
Q ss_pred cchHHHHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhh
Q 041252 120 TPNKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSL 199 (450)
Q Consensus 120 ~~n~~L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~l 199 (450)
.+|..+++++.-+...-.. ..++.--.+..+.+-+.++++-.|..|++.|..+.. ++.-+. ..+.+-+.
T Consensus 79 s~d~~lKrLvYLyl~~~~~----~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~ 147 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMSC----IAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA-----IERYMKQA 147 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTT----TSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHH
Confidence 5788899998777654211 122322345567777888888899999999888853 222222 24566777
Q ss_pred hCCCCChhhHHHHHHHHHhcCCCc-hhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHH
Q 041252 200 LGPFTSHAVGSEAVGVLVNLTLDS-ESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLI 278 (450)
Q Consensus 200 L~~~~~~~v~~~Al~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~ 278 (450)
|.+. +.-++..|+-+...|.... +.. .+.+..+-+++.+.++.++.+|..+|..+...+ ...+.
T Consensus 148 L~d~-~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d---------~~a~~ 212 (355)
T 3tjz_B 148 IVDK-VPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND---------RLAVS 212 (355)
T ss_dssp HTCS-SHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC---------HHHHH
T ss_pred cCCC-CHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc---------hHHHH
Confidence 7775 6789998888877765433 322 257899999999999999999999999996433 11345
Q ss_pred HHHHHHhcCC--CccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhc
Q 041252 279 GLMRLVKNKR--HPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKD 356 (450)
Q Consensus 279 ~Lv~lL~~~~--~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~ 356 (450)
.|+.-+.... ++-.+...++.+..++..++. -.....++.|...|++.++.+.-.|+.++..+...+.. ..
T Consensus 213 kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~- 285 (355)
T 3tjz_B 213 KMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL- 285 (355)
T ss_dssp HHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-------------
T ss_pred HHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-
Confidence 5565555431 222333333444344432200 01234566788888888999999999999888653321 22
Q ss_pred cCCChHHHHHHHhcCChHHHHHHHHHHHHhcccCc
Q 041252 357 CANTIPNTVRLLMRVSEDCTQYALSILWSICKIAP 391 (450)
Q Consensus 357 ~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 391 (450)
..++..|..++.+.++.++-.|+..|..+....|
T Consensus 286 -~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 286 -APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP 319 (355)
T ss_dssp ---CCCTHHHHHHSSSSSSHHHHHHCC--------
T ss_pred -HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc
Confidence 2456677788888888999999988888887766
No 154
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.82 E-value=0.015 Score=58.43 Aligned_cols=236 Identities=16% Similarity=0.167 Sum_probs=145.4
Q ss_pred HHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCC--chHHHHHHhcC---------------C--CHHHHHHHHHH
Q 041252 196 ISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPA--KVSLLVDMLNE---------------G--SVETKINCTRL 256 (450)
Q Consensus 196 Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g--~i~~Lv~lL~~---------------~--~~~~~~~aa~~ 256 (450)
++..|....+...+.-++..|..|...++.|..+.+.+ .++.++.+++. + ..+.+-++..+
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~ 251 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL 251 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence 34444432233455668888888888889998887643 36666554431 1 35678889999
Q ss_pred HHHHhccCCChhhHhhhhhH--HHHHHHHHhcCCCccchhHHHHHHHHhccCh-----HHHHHHHhcCCHHHHHHhcCC-
Q 041252 257 IEKLMEEKDFRPEIVSSHRL--LIGLMRLVKNKRHPNGILPGLSLLRSICLLN-----EVRSLVVSIGAVPQLVELLPS- 328 (450)
Q Consensus 257 L~~La~~~~~~~~~~~~~g~--l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~-----~~~~~iv~~G~v~~Lv~lL~~- 328 (450)
+|-|+-..+... .+...+. ++.|+.+++...-..+.+-++.+|+|+.... .....++-.|.++.++..|..
T Consensus 252 iWlLSF~~~~~~-~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~r 330 (480)
T 1ho8_A 252 IWLLTFNPVFAN-ELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSER 330 (480)
T ss_dssp HHHHTTSHHHHH-HHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSS
T ss_pred HHHHHcCHHHHH-HHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhC
Confidence 999976554333 3333333 3678888887544678889999999998543 222333322333556666633
Q ss_pred --CChhHHHHHHHHHHHh-------cCChhhHHH------------------------Hhc-cCCChHHHHHHHhcC---
Q 041252 329 --LDPDCLQLALCILDAL-------SSLPEGKLA------------------------LKD-CANTIPNTVRLLMRV--- 371 (450)
Q Consensus 329 --~~~~~~~~al~~L~~L-------~~~~e~r~~------------------------i~~-~~g~i~~Lv~lL~~~--- 371 (450)
.|+++.+.--.+...| ++-++.+.+ +.+ +-..+..|+++|...
T Consensus 331 k~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~ 410 (480)
T 1ho8_A 331 KYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRN 410 (480)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccc
Confidence 3666655444333333 222322222 222 112578889999742
Q ss_pred -------ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHH-HHhhc
Q 041252 372 -------SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKL-CSLNY 434 (450)
Q Consensus 372 -------s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~-ls~~~ 434 (450)
++.+..-|+.=|..++++.|+. +..+-+-|+=..++.+|.+. ++.+|..|...+.. +..||
T Consensus 411 ~~~~~s~d~~~laVAc~Digefvr~~P~g-r~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~~~~ 479 (480)
T 1ho8_A 411 GDVNAKQEKIIIQVALNDITHVVELLPES-IDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIGYTF 479 (480)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHHHHHCTTH-HHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHHHSC
T ss_pred cccccCCCcceEEeecccHHHHHHHCcch-hHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcC
Confidence 3556666777777888888743 44555779988889999887 78999998876654 44444
No 155
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.77 E-value=0.17 Score=55.24 Aligned_cols=194 Identities=12% Similarity=0.006 Sum_probs=121.7
Q ss_pred ChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHH
Q 041252 205 SHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNE-GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRL 283 (450)
Q Consensus 205 ~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~l 283 (450)
++.+++.++..|..+.. .+...++.+++.|.. .++.+|..++.++.-- .....+ ...+..|+..
T Consensus 521 ~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~~dp~vRygaa~alglA-yaGTGn------~~aIq~LL~~ 585 (963)
T 4ady_A 521 HGNITRGLAVGLALINY--------GRQELADDLITKMLASDESLLRYGGAFTIALA-YAGTGN------NSAVKRLLHV 585 (963)
T ss_dssp CHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHH-TTTSCC------HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcCCCC------HHHHHHHHHH
Confidence 34455555555544332 234567888888874 5777777766665432 222222 2345767777
Q ss_pred HhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChH
Q 041252 284 VKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELL-PSLDPDCLQLALCILDALSSLPEGKLALKDCANTIP 362 (450)
Q Consensus 284 L~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~ 362 (450)
+.+..+..++..|+.+|.-+...++ ..++.++++| .+.++.++..|..+|..++....+ .. +|.
T Consensus 586 ~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~~------aid 650 (963)
T 4ady_A 586 AVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-QS------AID 650 (963)
T ss_dssp HHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-HH------HHH
T ss_pred hccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-HH------HHH
Confidence 6655566788888888888764432 3567777755 567899999999999999754322 22 344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcccCchhHH-HHHHhcChHHHHHHHHHc-CCCHHHHHHHHHHHHHHH
Q 041252 363 NTVRLLMRVSEDCTQYALSILWSICKIAPEECS-SAAVDAGLAAKLFLVIQS-GCNPVLKQRSAELLKLCS 431 (450)
Q Consensus 363 ~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~-~~~~~~G~i~~L~~ll~s-~~~~~~k~~A~~lL~~ls 431 (450)
.|..++......+++.|+.+|..+.....+... +. ++....|...... ..++.++-.|+...-++-
T Consensus 651 ~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv---a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 651 VLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQV---ADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTH---HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHH---HHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 677777777889999999999998876543210 11 2334445555553 224667777766666553
No 156
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.43 E-value=0.028 Score=57.32 Aligned_cols=243 Identities=14% Similarity=0.119 Sum_probs=147.5
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhh-----CCCC-------ChhhHHHHHHHHH
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLL-----GPFT-------SHAVGSEAVGVLV 217 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL-----~~~~-------~~~v~~~Al~~L~ 217 (450)
-.+.|+..|-+...+.|..|+-.||.+.+.+...--.....+. ...++++ .+++ -..|++.++.+|.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 4566777788889999999999999998876421000011111 2233322 3322 2357888777777
Q ss_pred hcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHH
Q 041252 218 NLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGL 297 (450)
Q Consensus 218 ~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al 297 (450)
.+ .+-+.. -..+..|+..+....-++|..+.-.|..+ .+... .=.++++.++.-|.+. +.+++..|+
T Consensus 254 aL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~---~Ld~Vv~aVL~GL~D~-DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVE---DKDGLCRKLVSLLSSP-DEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCC---CHHHHHHHHHHHTTCS-SHHHHHHHH
T ss_pred HH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHH---HHHHHHHHHHhhcCCc-ccHHHHHHH
Confidence 76 432221 34566666666777899999999889888 11111 1256678888888876 688999999
Q ss_pred HHHHHhccChHHHHHHHhcCCHHHHHHhcCCC-C-hhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHH
Q 041252 298 SLLRSICLLNEVRSLVVSIGAVPQLVELLPSL-D-PDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDC 375 (450)
Q Consensus 298 ~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~-~-~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~ 375 (450)
.+|.-++ .++....+ +..+-+.|.+. + ..........|+.|++.+.. ....+.-+|.|.-.+.+....+
T Consensus 321 etLiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 321 ELLCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp HHHTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHH
T ss_pred HHhhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHH
Confidence 9999998 22111111 12233333222 1 23445556677777766531 1222567888888888888999
Q ss_pred HHHHHHHHHHhcccCchhHHHHHHhcChHHHHHH-HHHcCCCHHHHHHHHHHHH
Q 041252 376 TQYALSILWSICKIAPEECSSAAVDAGLAAKLFL-VIQSGCNPVLKQRSAELLK 428 (450)
Q Consensus 376 ~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~-ll~s~~~~~~k~~A~~lL~ 428 (450)
+..++.+|..+. . ..++..+.+ ++-.. .+.+++.+..+-+
T Consensus 392 R~AVL~TL~tfL--~----------~~~LRLIFQNILLE~-neeIl~lS~~VWk 432 (800)
T 3oc3_A 392 RTSILNMVKNLS--E----------ESIDFLVAEVVLIEE-KDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHTTTCC--C----------HHHHHHHHHHHHHCS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--h----------hhHHHHHHHHHHhCC-cHHHHHHHHHHHH
Confidence 999988887765 1 112333333 33333 5777777776665
No 157
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.27 E-value=0.00085 Score=64.19 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=36.7
Q ss_pred eeCcCCCCCCCC----Cee----CCCCCcccHHHHHHHHhcC-C---------CCCCCcCCcCC
Q 041252 70 FVCPISLEPMQD----PVT----LCTGQTYERSNILKWFSLG-R---------YTCPTTMQELW 115 (450)
Q Consensus 70 ~~Cpi~~~~m~d----Pv~----~~~g~ty~r~~I~~~~~~~-~---------~~cP~~~~~l~ 115 (450)
..|+||...+.+ |-. ..|||.|-..||.+|+... + ..||.|+++++
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 469999999887 533 3699999999999999741 1 46999998764
No 158
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.82 E-value=0.29 Score=53.52 Aligned_cols=101 Identities=17% Similarity=0.109 Sum_probs=67.2
Q ss_pred CHHHHHHhc-CCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHh-cCChHHHHHHHHHHHHhcccCchhHH
Q 041252 318 AVPQLVELL-PSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLM-RVSEDCTQYALSILWSICKIAPEECS 395 (450)
Q Consensus 318 ~v~~Lv~lL-~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~ 395 (450)
+|+.|+..+ .+.+..++..|+.+|..+.-.. ...++.++++|. ..++.++..|..+|..++..++..
T Consensus 578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~---------~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-- 646 (963)
T 4ady_A 578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD---------YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-- 646 (963)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS---------CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhhccCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--
Confidence 355555555 3446677787887777765332 124667776554 467889999999998888766521
Q ss_pred HHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCC
Q 041252 396 SAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTD 436 (450)
Q Consensus 396 ~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~ 436 (450)
. ++..|..++. +.++.+++.|...|.++..-..+
T Consensus 647 -~-----aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 647 -S-----AIDVLDPLTK-DPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp -H-----HHHHHHHHHT-CSSHHHHHHHHHHHHHHSTTCCT
T ss_pred -H-----HHHHHHHHcc-CCCHHHHHHHHHHHHHHhcCCcc
Confidence 2 3455555554 44889999999999987765443
No 159
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.007 Score=58.71 Aligned_cols=63 Identities=14% Similarity=0.299 Sum_probs=52.3
Q ss_pred eeeCcCCCCCCCCCee-CCCCCc--ccHHHHHHHHhc-CCCCCCCcCCcCCCCCCcchHHHHHHHHH
Q 041252 69 VFVCPISLEPMQDPVT-LCTGQT--YERSNILKWFSL-GRYTCPTTMQELWDDSVTPNKTLYHLIHT 131 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~-~~~g~t--y~r~~I~~~~~~-~~~~cP~~~~~l~~~~l~~n~~L~~~I~~ 131 (450)
.+.|||+...|..|+- ..|.|. ||...+.+...+ +...||.|++.+...+|..+.-+.+.++.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 5899999999999996 469998 999888887653 56789999999988899888877765543
No 160
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.12 Score=48.41 Aligned_cols=185 Identities=15% Similarity=0.087 Sum_probs=114.7
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHHcHHH--HH-HHHhhCC-hHHHHhhhCCCCChhhHHHHHHHHHhcCCC---chh-
Q 041252 154 LLGTLKKVKGQARVQALKELHQIAAAHASA--RK-TMVDEGG-VALISSLLGPFTSHAVGSEAVGVLVNLTLD---SES- 225 (450)
Q Consensus 154 Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~--r~-~i~~~G~-i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~---~~~- 225 (450)
+-+.|.+.+...|..|+..|..+....+.. .. .+...+. .+.+-..+... +..++..++.+|..+... ...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 557788889999999999999887543211 11 1112233 34455666654 678888888888765431 111
Q ss_pred hh--hccCCCchHHHHHH-hcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHH
Q 041252 226 KT--NLMQPAKVSLLVDM-LNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRS 302 (450)
Q Consensus 226 k~--~i~~~g~i~~Lv~l-L~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~ 302 (450)
+. ...-...++.|+.- |.+....++..|..++..++....... ..++.++..+.++ +|.++..++..|..
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~~K-npkv~~~~l~~l~~ 165 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFEKK-LPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence 11 11124457777764 777888999999888888764332211 1245555666665 68888888887776
Q ss_pred hccC--hH--HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC
Q 041252 303 ICLL--NE--VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL 347 (450)
Q Consensus 303 Ls~~--~~--~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 347 (450)
+-.. .. +-...+ ..+++.+..+|.+.++.++..|..++..+-..
T Consensus 166 ~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 6421 10 111111 12345677788899999999999999888654
No 161
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.24 E-value=0.0078 Score=47.48 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=28.9
Q ss_pred CeeeCcCCCC-CCCCCee--CCCCCcccHHHHHHHHh
Q 041252 68 SVFVCPISLE-PMQDPVT--LCTGQTYERSNILKWFS 101 (450)
Q Consensus 68 ~~~~Cpi~~~-~m~dPv~--~~~g~ty~r~~I~~~~~ 101 (450)
+++.|+||.+ ...+||. +.|||+||+.|++.|..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 3578999996 5899998 89999999999999443
No 162
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=95.00 E-value=0.017 Score=55.81 Aligned_cols=63 Identities=11% Similarity=0.287 Sum_probs=52.5
Q ss_pred CeeeCcCCCCCCCCCee-CCCCCc--ccHHHHHHHHhc-CCCCCCCcCCcCCCCCCcchHHHHHHHH
Q 041252 68 SVFVCPISLEPMQDPVT-LCTGQT--YERSNILKWFSL-GRYTCPTTMQELWDDSVTPNKTLYHLIH 130 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~-~~~g~t--y~r~~I~~~~~~-~~~~cP~~~~~l~~~~l~~n~~L~~~I~ 130 (450)
-.+.|||+...|+.|+- ..|.|. ||...+-+...+ +...||.|++.+...+|.-+.-+.+.+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 35789999999999996 469998 999998887664 4678999999998888888877776554
No 163
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.76 E-value=0.94 Score=49.91 Aligned_cols=217 Identities=14% Similarity=0.201 Sum_probs=140.0
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL 229 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i 229 (450)
.++.++....+....+|..|-.++..+...-+.+ .+ ...+|.|+..|.+...=..+..|+.++..|+... ...+
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~--a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~ 169 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPV--AI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQV 169 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG--GH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHH
Confidence 3555666666655678887777888777643222 11 3347888888864422346667888888777532 2333
Q ss_pred cC--CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252 230 MQ--PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN 307 (450)
Q Consensus 230 ~~--~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~ 307 (450)
.. +..||.+-..+-..-++++..|..++..++..-+ +..+ ...+|.|++.+.++ +-+-.+...|..-..-.
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~-n~d~---~~~~~~~~~~~~~p---~~~~~~~~~l~~~tfv~ 242 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVD-NKDI---ERFIPSLIQCIADP---TEVPETVHLLGATTFVA 242 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC-CTTT---GGGHHHHHHHHHCT---THHHHHHHHHTTCCCCS
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC-Ccch---hhhHHHHHHHhcCh---hhhHHHHHHhhcCeeEe
Confidence 22 5678888888877789999999999999974322 1122 35689999998764 22344444444333221
Q ss_pred H----HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC---hhhHHHHhccCCChHHHHHHHhcCC-hHHHHHH
Q 041252 308 E----VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSL---PEGKLALKDCANTIPNTVRLLMRVS-EDCTQYA 379 (450)
Q Consensus 308 ~----~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~---~e~r~~i~~~~g~i~~Lv~lL~~~s-~~~~e~A 379 (450)
+ .-.. .+|.|.+=|......++..++-++.|||.- |..-..|. ...+|.|-+.....+ +++++.|
T Consensus 243 ~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~ 315 (986)
T 2iw3_A 243 EVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVT 315 (986)
T ss_dssp CCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHH
T ss_pred eecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHH
Confidence 1 1111 357777778878889999999999999975 44444555 367777777766654 7777777
Q ss_pred HHHHHHh
Q 041252 380 LSILWSI 386 (450)
Q Consensus 380 ~~~L~~L 386 (450)
-.++..|
T Consensus 316 ~~a~~~l 322 (986)
T 2iw3_A 316 LRALKTL 322 (986)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666665
No 164
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.71 E-value=0.52 Score=43.83 Aligned_cols=178 Identities=14% Similarity=0.116 Sum_probs=111.4
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCC-hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhh-hhcc
Q 041252 153 ELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGG-VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESK-TNLM 230 (450)
Q Consensus 153 ~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~-i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k-~~i~ 230 (450)
++...|-+.+...+..|+..|......++ +..+..... ++.+.--+.+ .+..+...++.+|..+...-... ..+.
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d-~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFE-TNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTS-CCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 45555656667778888888887765433 222222222 2222211223 25667777777777642110001 1122
Q ss_pred C---CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252 231 Q---PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN 307 (450)
Q Consensus 231 ~---~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~ 307 (450)
+ .-.+|.|+.-+......+|..+-.+|..+.. +.....+.+.++.-++++ +..++..++..+..+-...
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKMTPMLLDALKSK-NARQRSECLLVIEYYITNA 198 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc
Confidence 1 3468999999988888999999998888753 222334567777777776 5777777777777664111
Q ss_pred HHHHHHHhcCCH---HHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252 308 EVRSLVVSIGAV---PQLVELLPSLDPDCLQLALCILDALS 345 (450)
Q Consensus 308 ~~~~~iv~~G~v---~~Lv~lL~~~~~~~~~~al~~L~~L~ 345 (450)
... ...++ +.+..++.+.|..++..|+.++..+-
T Consensus 199 G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 199 GIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp CSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred CCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 000 24578 99999999999999999999888554
No 165
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.08 E-value=0.56 Score=44.58 Aligned_cols=176 Identities=13% Similarity=0.070 Sum_probs=101.0
Q ss_pred chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHH----HHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccC--CCch
Q 041252 162 KGQARVQALKELHQIAAAHASARKTMVDEGGVAL----ISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQ--PAKV 235 (450)
Q Consensus 162 ~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~----Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~--~g~i 235 (450)
+.+.+.-++..+|-++. ++.....+.+.+.-.. +...+.+......+--++.+++|+-.++..+..+.. ...+
T Consensus 115 P~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il 193 (304)
T 3ebb_A 115 PEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLM 193 (304)
T ss_dssp CTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHH
T ss_pred CHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence 34455556666666553 4444444544322222 334443322334566788999999888888776654 2345
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHh
Q 041252 236 SLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVS 315 (450)
Q Consensus 236 ~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~ 315 (450)
+.+...+.+.+..++..++.++.|++.........-....++..+..++....+.++.-.++-||.+|...+.....+.+
T Consensus 194 ~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak 273 (304)
T 3ebb_A 194 SHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAK 273 (304)
T ss_dssp HHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence 55555555668999999999999997321000011112224555555665555677778888888888854444444444
Q ss_pred -cCCHHHHHHhcCC-CChhHHHHHH
Q 041252 316 -IGAVPQLVELLPS-LDPDCLQLAL 338 (450)
Q Consensus 316 -~G~v~~Lv~lL~~-~~~~~~~~al 338 (450)
.|+-..+-..... ....+.+.|-
T Consensus 274 ~l~~~~~v~~~~~~~~~~kv~~~~~ 298 (304)
T 3ebb_A 274 SLGVDSQIKKYSSVSEPAKVSECCR 298 (304)
T ss_dssp HTTHHHHGGGGGGCCSSHHHHHHHH
T ss_pred HcCHHHHHHHHHhCCCchhHHHHHH
Confidence 5655555555543 2344444443
No 166
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=93.62 E-value=0.14 Score=38.56 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=38.6
Q ss_pred eeeCcCCCCCCC-----CCeeCC--CCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 69 VFVCPISLEPMQ-----DPVTLC--TGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 69 ~~~Cpi~~~~m~-----dPv~~~--~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
.-+|.||++-.- +|.+++ |++..||.|.+-=.++|+..||.|+.++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 357999997533 466664 99999999999888889999999998875
No 167
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.59 E-value=0.75 Score=43.71 Aligned_cols=183 Identities=11% Similarity=0.105 Sum_probs=104.0
Q ss_pred hHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchH----HHHHHhcC-CCHHHHHHHHHHHHHHhccCCCh
Q 041252 193 VALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVS----LLVDMLNE-GSVETKINCTRLIEKLMEEKDFR 267 (450)
Q Consensus 193 i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~----~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~ 267 (450)
+..+..++ .+ ..+.+-.++.+++.+..++..-..+.+...-. .+...+.+ +++..+..+.+++.|+-.....+
T Consensus 105 l~~l~kil-~W-P~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 105 LQILWKAI-NC-PEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHH-TS-CTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHH-cC-CHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 45666666 44 44666777888887777765555554432222 23333432 35667888899999996655444
Q ss_pred hhHhhh-hhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHH-hcCCHHHHHHhcC-CCChhHHHHHHHHHHHh
Q 041252 268 PEIVSS-HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVV-SIGAVPQLVELLP-SLDPDCLQLALCILDAL 344 (450)
Q Consensus 268 ~~~~~~-~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv-~~G~v~~Lv~lL~-~~~~~~~~~al~~L~~L 344 (450)
..++.. ..++..+...+.+ .+.+++.+++.++.|++.........- ..-++..+..++. ..+.+....++-+|.+|
T Consensus 183 ~~l~~~~~~il~~~~~~~~~-~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSG-SNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSS-CCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 444322 2234444443333 367788899999999984311000000 0113334444443 35789999999999999
Q ss_pred cCChhhHHHHhccCCChHHHHHHHhcC--ChHHHHHH
Q 041252 345 SSLPEGKLALKDCANTIPNTVRLLMRV--SEDCTQYA 379 (450)
Q Consensus 345 ~~~~e~r~~i~~~~g~i~~Lv~lL~~~--s~~~~e~A 379 (450)
...+.....+.+ .-++...++-+... +.++.+.|
T Consensus 262 ~~~~~~~~~lak-~l~~~~~v~~~~~~~~~~kv~~~~ 297 (304)
T 3ebb_A 262 ISDDSNAVQLAK-SLGVDSQIKKYSSVSEPAKVSECC 297 (304)
T ss_dssp HTTCHHHHHHHH-HTTHHHHGGGGGGCCSSHHHHHHH
T ss_pred HhCChhHHHHHH-HcCHHHHHHHHHhCCCchhHHHHH
Confidence 976555555554 34455555555443 23444443
No 168
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.31 E-value=0.55 Score=43.10 Aligned_cols=96 Identities=20% Similarity=0.211 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCC-----hHHHHHHHHHHHHhcccCchhHHHHHHhcChHHH
Q 041252 332 DCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVS-----EDCTQYALSILWSICKIAPEECSSAAVDAGLAAK 406 (450)
Q Consensus 332 ~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s-----~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~ 406 (450)
.-.-+|+..|..++++|+.|..+.+ +...--|.-.|...+ +-.+-.+++++.++.+.+..++.....+.+.+|.
T Consensus 71 nRVcnaLaLlQcvAshpetr~~Fl~-a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 71 NRVCNALALLQCVASHPETRSAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHHHHHCTTTHHHHHH-TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHHHHHHcCcchhhHHHH-ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence 3457788899999999999999998 776666666666654 4567779999999999877677777789999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Q 041252 407 LFLVIQSGCNPVLKQRSAELLKL 429 (450)
Q Consensus 407 L~~ll~s~~~~~~k~~A~~lL~~ 429 (450)
.+..|+.| ++..|.-|.-++..
T Consensus 150 CLrime~G-selSKtvAtfIlqK 171 (268)
T 2fv2_A 150 CLRIMESG-SELSKTVATFILQK 171 (268)
T ss_dssp HHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHhhc-cHHHHHHHHHHHHH
Confidence 99999999 77788777765544
No 169
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.10 E-value=0.69 Score=42.47 Aligned_cols=150 Identities=14% Similarity=0.149 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCC-C---hhhHHHHHHHHHhcCCCc--hhhhhccCCCchHHH
Q 041252 165 ARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFT-S---HAVGSEAVGVLVNLTLDS--ESKTNLMQPAKVSLL 238 (450)
Q Consensus 165 ~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~-~---~~v~~~Al~~L~~Ls~~~--~~k~~i~~~g~i~~L 238 (450)
-...|+.-|+-++ .|++.|..+.++...--|-.+|.... + +-.+-.+++++..|...+ +.-..+.+.+.||..
T Consensus 72 RVcnaLaLlQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 72 RVCNALALLQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 3455777777777 57889999999986666777775432 1 234556788888877543 455567788999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhh-------hhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHH
Q 041252 239 VDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSS-------HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRS 311 (450)
Q Consensus 239 v~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~-------~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~ 311 (450)
++.+..|+.-.|.-|+.++..+..++.....+-.. ...+..++.-+....++...+...++-..|+.++..|.
T Consensus 151 Lrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~ 230 (268)
T 2fv2_A 151 LRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRARE 230 (268)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999886555333322211 22344444444444456677899999999999998887
Q ss_pred HHHh
Q 041252 312 LVVS 315 (450)
Q Consensus 312 ~iv~ 315 (450)
.+..
T Consensus 231 aL~~ 234 (268)
T 2fv2_A 231 ALRQ 234 (268)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 170
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.51 E-value=6.6 Score=38.40 Aligned_cols=177 Identities=15% Similarity=0.155 Sum_probs=106.1
Q ss_pred HHHHHHHhhccchHH-HHHHHHHHHHHHHHcHHHH-HHHHhhCChHHHHhhhCC----------CCChhhHHHHHHHHHh
Q 041252 151 ASELLGTLKKVKGQA-RVQALKELHQIAAAHASAR-KTMVDEGGVALISSLLGP----------FTSHAVGSEAVGVLVN 218 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~-~~~Al~~L~~l~~~~~~~r-~~i~~~G~i~~Lv~lL~~----------~~~~~v~~~Al~~L~~ 218 (450)
....+..|.+..... ..+.+..|+.--..++-.+ +.+. .+|+..|+.+|.. ..+...+...+.+|..
T Consensus 68 P~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLka 146 (383)
T 3eg5_B 68 AMMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 146 (383)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence 445666666543322 2234555554444443333 3333 6788888888842 1134567788888988
Q ss_pred cCCCchhhhhcc-CCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--C-hhhHhhhh---------hHHHHHHHHHh
Q 041252 219 LTLDSESKTNLM-QPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD--F-RPEIVSSH---------RLLIGLMRLVK 285 (450)
Q Consensus 219 Ls~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~--~-~~~~~~~~---------g~l~~Lv~lL~ 285 (450)
+-.+......++ .+..+..|+..|.+.++.++..+..+|..++..++ . ...++.+. .-+..++..|+
T Consensus 147 lmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 147 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp HTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred HhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 887776666554 57899999999999999999999999998876543 2 23332221 12455666665
Q ss_pred cCCCccchhHHHHHHHHhcc---ChHH----HHHHHhcCCHHHHHHhcCCC
Q 041252 286 NKRHPNGILPGLSLLRSICL---LNEV----RSLVVSIGAVPQLVELLPSL 329 (450)
Q Consensus 286 ~~~~~~~~~~al~aL~~Ls~---~~~~----~~~iv~~G~v~~Lv~lL~~~ 329 (450)
.+.+.+.+.+++..+-.+.. +-+. |..+...|..+.+-. |+..
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~ 276 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREI 276 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTS
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcC
Confidence 53344445555555555542 2233 444556676665555 5443
No 171
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.50 E-value=2.3 Score=38.54 Aligned_cols=136 Identities=15% Similarity=0.167 Sum_probs=83.3
Q ss_pred hhCChHHHHhhhCCC----------CChhhHHHHHHHHHhcCCCchhhhhcc-CCCchHHHHHHhcCCCHHHHHHHHHHH
Q 041252 189 DEGGVALISSLLGPF----------TSHAVGSEAVGVLVNLTLDSESKTNLM-QPAKVSLLVDMLNEGSVETKINCTRLI 257 (450)
Q Consensus 189 ~~G~i~~Lv~lL~~~----------~~~~v~~~Al~~L~~Ls~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L 257 (450)
..+|+..|+.+|... .+...+...+.+|..+.........++ .+..+..|+..|.+.++.++..+..+|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 467888888877421 123556778888888887776666554 578999999999999999999999999
Q ss_pred HHHhccCC--C-hhhHhhhhh---------HHHHHHHHHhcCCCccchhHHHHHHHHhccC---hH----HHHHHHhcCC
Q 041252 258 EKLMEEKD--F-RPEIVSSHR---------LLIGLMRLVKNKRHPNGILPGLSLLRSICLL---NE----VRSLVVSIGA 318 (450)
Q Consensus 258 ~~La~~~~--~-~~~~~~~~g---------~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~---~~----~~~~iv~~G~ 318 (450)
..++..++ . ...+..+.. -+..++..++...+.+.+.+++..+-.+... -+ .|..+...|.
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl 200 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 200 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 88875543 3 333322211 2334555554332333444555555444422 22 3444555665
Q ss_pred HHHHHH
Q 041252 319 VPQLVE 324 (450)
Q Consensus 319 v~~Lv~ 324 (450)
.+.+-.
T Consensus 201 ~~il~~ 206 (233)
T 2f31_A 201 HQVLQE 206 (233)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 172
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.26 E-value=0.15 Score=46.72 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=37.8
Q ss_pred eeeCcCCCCCCCCCeeCC-CCCcccHHHHHHHHhc-CCCCCCCcCCcCCC
Q 041252 69 VFVCPISLEPMQDPVTLC-TGQTYERSNILKWFSL-GRYTCPTTMQELWD 116 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~-~g~ty~r~~I~~~~~~-~~~~cP~~~~~l~~ 116 (450)
...|.||.++..-=+.-+ |++.|-+.|+.+|+.. +...||.|+.+.+.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 567999999888443322 8999999999999985 35689999987544
No 173
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=91.66 E-value=1.5 Score=40.70 Aligned_cols=189 Identities=9% Similarity=0.067 Sum_probs=110.0
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCh---hhHhhhhh-HHHHHHHHHhcCCCccchhHHHHHHHHhccC--h-
Q 041252 235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFR---PEIVSSHR-LLIGLMRLVKNKRHPNGILPGLSLLRSICLL--N- 307 (450)
Q Consensus 235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~---~~~~~~~g-~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~--~- 307 (450)
+| +-+-|.+.+-..|..|...|..+....... ...+...+ ..+.+-..+.+. +..++..++.+|..++.. .
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC--
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhh
Confidence 44 557788899999999998888775332110 00111111 223444555554 577788888888887631 1
Q ss_pred ---HHHHHHHhcCCHHHHHHh-cCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHH
Q 041252 308 ---EVRSLVVSIGAVPQLVEL-LPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSIL 383 (450)
Q Consensus 308 ---~~~~~iv~~G~v~~Lv~l-L~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L 383 (450)
.......-...++.|++= |.+....++..|..+|..++........ .++.++..+.+.+++++..++..|
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKKLPKLIAAAANCV 163 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhccCHHHHHHHHHHH
Confidence 112222234567888864 7778888999988888777532211111 123444555667899998888888
Q ss_pred HHhccc-CchhH-HHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 384 WSICKI-APEEC-SSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 384 ~~L~~~-~~~~~-~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
..+-.. ..... ....+. .+++.+..++.+. ++.+|..|..++--+-..
T Consensus 164 ~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~-~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 164 YELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHG-DRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCS-SHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHH
Confidence 776432 11110 111111 2334455666665 899999999888766544
No 174
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=91.47 E-value=4.5 Score=36.54 Aligned_cols=148 Identities=16% Similarity=0.096 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHhcC---C-------CccchhHHHHHHHHhccChHHHHHHHh-cCCHHHHHHhcCCCChhHHHHHHHHHH
Q 041252 274 HRLLIGLMRLVKNK---R-------HPNGILPGLSLLRSICLLNEVRSLVVS-IGAVPQLVELLPSLDPDCLQLALCILD 342 (450)
Q Consensus 274 ~g~l~~Lv~lL~~~---~-------~~~~~~~al~aL~~Ls~~~~~~~~iv~-~G~v~~Lv~lL~~~~~~~~~~al~~L~ 342 (450)
.+++..|+.+|..- . +......++.+|+.|..+......+.+ .+++..|+..|.+.++.++..++.+|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 46677777777531 1 122355888999999988877777776 678999999999889999999999999
Q ss_pred HhcCChh--h-HHHHhc---------cCCChHHHHHHHhcCC-hHHHHHHHHHHHHhcccCch-----hHHHHHHhcChH
Q 041252 343 ALSSLPE--G-KLALKD---------CANTIPNTVRLLMRVS-EDCTQYALSILWSICKIAPE-----ECSSAAVDAGLA 404 (450)
Q Consensus 343 ~L~~~~e--~-r~~i~~---------~~g~i~~Lv~lL~~~s-~~~~e~A~~~L~~L~~~~~~-----~~~~~~~~~G~i 404 (450)
.+|..++ | ...+.+ ...-...+|+.+...+ ...+-.++..+-.+....++ ..+.+....|..
T Consensus 122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 201 (233)
T 2f31_A 122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 201 (233)
T ss_dssp HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 9997643 6 554433 1224556676665433 33444444444444444332 124455567775
Q ss_pred HHHHHHHHcCCCHHHHHH
Q 041252 405 AKLFLVIQSGCNPVLKQR 422 (450)
Q Consensus 405 ~~L~~ll~s~~~~~~k~~ 422 (450)
..+- -++...++.....
T Consensus 202 ~il~-~l~~~~~~~L~~Q 218 (233)
T 2f31_A 202 QVLQ-ELREIENEDMKVQ 218 (233)
T ss_dssp HHHH-HHHHCCCHHHHHH
T ss_pred HHHH-HHhccCCHHHHHH
Confidence 5554 4444446665544
No 175
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=91.00 E-value=2.3 Score=46.94 Aligned_cols=256 Identities=7% Similarity=0.058 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCC-----CCChhhHHHHHHHHHhcCCCchhhhhccCC-----Cc
Q 041252 165 ARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGP-----FTSHAVGSEAVGVLVNLTLDSESKTNLMQP-----AK 234 (450)
Q Consensus 165 ~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~-----~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~-----g~ 234 (450)
.|..|...|..++.... +.+.. -.++.+...+.. ..+-..++.|+.++..++.....+..-+.. ..
T Consensus 377 ~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp HHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred cHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 56667777777776432 22211 112333333431 112346677788777775432111111111 22
Q ss_pred hHH----HHHHhcCC---CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252 235 VSL----LVDMLNEG---SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLN 307 (450)
Q Consensus 235 i~~----Lv~lL~~~---~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~ 307 (450)
.+. ++..|.+. ++-+|..|+++|..+++.- ..+. -..+++.++..|.+. ++.++..|+.||.+++...
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~--l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQ--LIELMPILATFLQTD-EYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHH--HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHH--HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcc
Confidence 232 33334555 8899999999999997642 1221 245678888888765 5778899999999998631
Q ss_pred H---------HHHHHHh--cCCHHHHHHhcCCCC-----hhHHHHHHHHHHHhcCC-hhhHHHHhccCCChHHHHHHHhc
Q 041252 308 E---------VRSLVVS--IGAVPQLVELLPSLD-----PDCLQLALCILDALSSL-PEGKLALKDCANTIPNTVRLLMR 370 (450)
Q Consensus 308 ~---------~~~~iv~--~G~v~~Lv~lL~~~~-----~~~~~~al~~L~~L~~~-~e~r~~i~~~~g~i~~Lv~lL~~ 370 (450)
+ .+..+.. ...++.|+.++.... ....+.++.+|..++.. .+.-..... ..++.|+..+..
T Consensus 528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~ 605 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTI 605 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHH
T ss_pred cccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHH
Confidence 1 1222221 234555666665431 11334556666555432 111111111 234455555543
Q ss_pred C-----ChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Q 041252 371 V-----SEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 371 ~-----s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~ 433 (450)
. +......++.+|..+......+.. .....-.++.+..+++... ......+..++..+...
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~-~~~~~~~~p~~~~iL~~~~-~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNL-PLLVDSMMPTFLTVFSEDI-QEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGH-HHHHHHHHHHHHHHHHTTC-TTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHHhhh-HhhHHHHHHHHHHHHHh
Confidence 1 234556677777777765222222 2334567788888887763 34445555555554433
No 176
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=90.08 E-value=1.3 Score=43.50 Aligned_cols=116 Identities=17% Similarity=0.163 Sum_probs=83.1
Q ss_pred cCCHHHHHHhcC-----------CCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHH
Q 041252 316 IGAVPQLVELLP-----------SLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILW 384 (450)
Q Consensus 316 ~G~v~~Lv~lL~-----------~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~ 384 (450)
.+|+..|+.+|. ..+......++.+|+.+..+..|...+..+..+|..|+..|.+.++.++..|+.+|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 455666666662 124577888999999999999999999998999999999999889999999999999
Q ss_pred HhcccCc-hh---HHHHH-------HhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 041252 385 SICKIAP-EE---CSSAA-------VDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCS 431 (450)
Q Consensus 385 ~L~~~~~-~~---~~~~~-------~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls 431 (450)
.+|.... +. ..-.+ -+..-+..++..+.++.....+-.+..++..+-
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li 245 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI 245 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence 9998764 21 11111 123446777777766545566666666655543
No 177
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=88.79 E-value=7.3 Score=37.20 Aligned_cols=209 Identities=11% Similarity=0.163 Sum_probs=142.7
Q ss_pred HHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHH----HHHHhhCChHHHHhhh
Q 041252 125 LYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASAR----KTMVDEGGVALISSLL 200 (450)
Q Consensus 125 L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r----~~i~~~G~i~~Lv~lL 200 (450)
...+.++.+.. +.+..|+..|..-+-+.|..+.....++.......| ..+... -..|.-++
T Consensus 67 ~~qL~~ei~~~-------------dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~--peil~~L~ 131 (341)
T 1upk_A 67 VAQLAQELYNS-------------GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLL 131 (341)
T ss_dssp HHHHHHHHHHH-------------SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHH
T ss_pred HHHHHHHHHHh-------------CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC--HHHHHHHH
Confidence 45556666655 345567777777777888887777666655332211 122221 22333344
Q ss_pred CCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-ChhhHhhh--hhHH
Q 041252 201 GPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKD-FRPEIVSS--HRLL 277 (450)
Q Consensus 201 ~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~-~~~~~~~~--~g~l 277 (450)
....+.++.-.+=.+|+.+..++...+.+...+.+-.+.+....++-++...|-.++..|-..+. ...+.+.. .-++
T Consensus 132 ~gYe~~diAl~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff 211 (341)
T 1upk_A 132 KGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFF 211 (341)
T ss_dssp HGGGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHH
T ss_pred HhhccchhHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHH
Confidence 33334556666667888888888888888888888899999999999999999999998853322 22222211 2355
Q ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHh----cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChh
Q 041252 278 IGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVS----IGAVPQLVELLPSLDPDCLQLALCILDALSSLPE 349 (450)
Q Consensus 278 ~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~----~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e 349 (450)
...-++|.++ +=-+++.++..|..|-.+..|...|.. ..-+..++.+|++.+..++-.|..+......+|.
T Consensus 212 ~~y~~Ll~S~-NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 212 SEYEKLLHSE-NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHTTCS-SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHhcCC-cchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 5666677776 345788999999999877776655553 4577888999999999999999999987766543
No 178
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=88.05 E-value=12 Score=36.68 Aligned_cols=145 Identities=15% Similarity=0.163 Sum_probs=89.0
Q ss_pred hhCChHHHHhhhCCC----------CChhhHHHHHHHHHhcCCCchhhhhcc-CCCchHHHHHHhcCCCHHHHHHHHHHH
Q 041252 189 DEGGVALISSLLGPF----------TSHAVGSEAVGVLVNLTLDSESKTNLM-QPAKVSLLVDMLNEGSVETKINCTRLI 257 (450)
Q Consensus 189 ~~G~i~~Lv~lL~~~----------~~~~v~~~Al~~L~~Ls~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~aa~~L 257 (450)
..+|+..|+.+|... .+...+...+.+|..+.........++ .+.++..++..|.+.++.++..+..+|
T Consensus 45 ~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL 124 (386)
T 2bnx_A 45 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 124 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 367788888777421 123567778888888887776666554 578999999999999999999999999
Q ss_pred HHHhccCC--C-hhhHhhhh---------hHHHHHHHHHhcCCCccchhHHHHHHHHhccC---hH----HHHHHHhcCC
Q 041252 258 EKLMEEKD--F-RPEIVSSH---------RLLIGLMRLVKNKRHPNGILPGLSLLRSICLL---NE----VRSLVVSIGA 318 (450)
Q Consensus 258 ~~La~~~~--~-~~~~~~~~---------g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~---~~----~~~~iv~~G~ 318 (450)
..++..++ . ...++.+. .-+..+|..+....+.+.+.+++..+-.|... -+ .|..+...|.
T Consensus 125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL 204 (386)
T 2bnx_A 125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 204 (386)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 88875543 2 22232221 12344666665433444455555555555422 22 3555556676
Q ss_pred HHHHHHhcCCCChhH
Q 041252 319 VPQLVELLPSLDPDC 333 (450)
Q Consensus 319 v~~Lv~lL~~~~~~~ 333 (450)
.+.+-.+=...++.+
T Consensus 205 ~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 205 HQVLQELREIENEDM 219 (386)
T ss_dssp HHHHHHHTTCCCHHH
T ss_pred HHHHHHHhccCChhH
Confidence 665544433344433
No 179
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=87.39 E-value=15 Score=36.86 Aligned_cols=121 Identities=10% Similarity=0.058 Sum_probs=87.0
Q ss_pred ccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHH
Q 041252 160 KVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLV 239 (450)
Q Consensus 160 ~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv 239 (450)
+++...+.-|..-|....+.-++.... ++..++.+.... +..++..|+..|-.++.+ ++-.. ....|+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDE-DVSIRRQAIKELPQFATG-ENLPR-----VADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHH
Confidence 345677888999998888877766554 478889999875 788999999999999988 44333 367788
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHH
Q 041252 240 DMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLR 301 (450)
Q Consensus 240 ~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~ 301 (450)
++|.++++......-.+|..|...+. .+.+.+|+.-+..+ +..+++.++..|.
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~-~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQG-EDIVRERAIKFLS 159 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHccc-chHHHHHHHHHHH
Confidence 89998888888887788877754432 33455555555554 4556666666553
No 180
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=87.23 E-value=4.7 Score=37.33 Aligned_cols=137 Identities=10% Similarity=0.097 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHHHHh---ccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-ChHHHHHHHhcCCH
Q 041252 244 EGSVETKINCTRLIEKLM---EEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-LNEVRSLVVSIGAV 319 (450)
Q Consensus 244 ~~~~~~~~~aa~~L~~La---~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~~~~~~~iv~~G~v 319 (450)
+.+..+...+..+|..+. ...+.+-.-....-++|.|+.=+-+. ...++..+-.+|..++. .+.. ..+
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~-------~v~ 169 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL-------KMT 169 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH-------HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH-------HHH
Confidence 567778777777777663 11111111112245778887765443 34466666666666652 1212 245
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCCh---HHHHHHHhcCChHHHHHHHHHHHHhcccCchh
Q 041252 320 PQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTI---PNTVRLLMRVSEDCTQYALSILWSICKIAPEE 393 (450)
Q Consensus 320 ~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i---~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~ 393 (450)
+.+++-+.+.+...++.++..|..+-.. .|-. . ..++ +.+.+++...+..+++.|+.++..+..+..+.
T Consensus 170 ~~l~~g~ksKN~R~R~e~l~~l~~li~~-~G~~---~-~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 170 PMLLDALKSKNARQRSECLLVIEYYITN-AGIS---P-LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHH-HCSG---G-GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHh-cCCC---c-cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 5677777888999999999998888643 2222 2 3578 99999999989999999999998876655433
No 181
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=85.98 E-value=15 Score=40.28 Aligned_cols=135 Identities=16% Similarity=0.068 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHH---h-cCCCccchhHHHHHHHHhccChHHHHHHHhcCCHH
Q 041252 245 GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLV---K-NKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVP 320 (450)
Q Consensus 245 ~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL---~-~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~ 320 (450)
.+...++.|..++..+++.-.... ...++.++.++ . +..++.++..++++|..++..-....... ..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHH
Confidence 455688888888888875422111 12334444443 2 11267778899999998884321111111 13456
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhcc-CCChHHHHHHHhc--CChHHHHHHHHHHHHhcccC
Q 041252 321 QLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDC-ANTIPNTVRLLMR--VSEDCTQYALSILWSICKIA 390 (450)
Q Consensus 321 ~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~-~g~i~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~ 390 (450)
.|+..| + +.++..|+.+|..++.. .+..+... ...+..+.+++.+ .+...++.+..++..++...
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 666666 2 78999999999999942 33333321 2455666677766 35678888888888887643
No 182
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=84.93 E-value=15 Score=40.09 Aligned_cols=177 Identities=14% Similarity=0.099 Sum_probs=100.4
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhc--CCCccchhHHHHHHHHhccChHHHHHHHhcCCHH
Q 041252 243 NEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKN--KRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVP 320 (450)
Q Consensus 243 ~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~--~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~ 320 (450)
.+.+...++.+..++..++..-... ....++.++..+.. ..++.++..++++|..++..-....... ..+++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHH
Confidence 4457788999999999987542211 01234445554432 1256677888888888874322111222 36888
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhcc-CCChHHHHHHHhc--CChHHHHHHHHHHHHhcccCchhHHHH
Q 041252 321 QLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDC-ANTIPNTVRLLMR--VSEDCTQYALSILWSICKIAPEECSSA 397 (450)
Q Consensus 321 ~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~-~g~i~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~~~~~~~~ 397 (450)
.|+..|.+ +.++..|+.+|..++.. .+..+... ...+..+.+++.+ .+...++.+..++..+....+.+....
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~ 608 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK 608 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 89988864 88999999999999842 22223211 1233344455554 246788888888888876553121222
Q ss_pred HHhcChHHHHHHHHH----cCCCHHHHHHHHHHHHHH
Q 041252 398 AVDAGLAAKLFLVIQ----SGCNPVLKQRSAELLKLC 430 (450)
Q Consensus 398 ~~~~G~i~~L~~ll~----s~~~~~~k~~A~~lL~~l 430 (450)
.+ ...++++...++ .+.++..+.....++..+
T Consensus 609 ~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 609 NL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp HH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 22 234444444332 333455555444444433
No 183
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=84.92 E-value=27 Score=33.23 Aligned_cols=208 Identities=13% Similarity=0.071 Sum_probs=143.9
Q ss_pred ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCC----hhhHh-hhhhHHHHHHHHHhcCCCccchhHHHHHHHHh
Q 041252 229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDF----RPEIV-SSHRLLIGLMRLVKNKRHPNGILPGLSLLRSI 303 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~----~~~~~-~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~L 303 (450)
+...+.+..|+..|..=+-+.|..++.+..++...... ..+.+ ....++..|+ ..-.+++.--.+-..|+..
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~---~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLL---KGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHH---HGGGSTTTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHH---HhhccchhHhHHHHHHHHH
Confidence 34567888999999877999999999998888643211 11122 2222333333 3323455666677778888
Q ss_pred ccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc-CChhhHHHHhc--cCCChHHHHHHHhcCChHHHHHHH
Q 041252 304 CLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS-SLPEGKLALKD--CANTIPNTVRLLMRVSEDCTQYAL 380 (450)
Q Consensus 304 s~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~-~~~e~r~~i~~--~~g~i~~Lv~lL~~~s~~~~e~A~ 380 (450)
..++.....+...+.+-.+.+.+..++-++...|..++..|- .+..-...+.. -.-.....-++|.+.+--+++.++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 889988888888888999999999999999999999999875 34443344433 012455667788888889999999
Q ss_pred HHHHHhcccCchh-H-HHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCccc
Q 041252 381 SILWSICKIAPEE-C-SSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDTTFI 440 (450)
Q Consensus 381 ~~L~~L~~~~~~~-~-~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~~~i 440 (450)
..|..+-...... . .+-+....-+..++.+|++. +..++-.|--+.|++-.|...++-|
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I 291 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPI 291 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHH
Confidence 9999886654322 1 12222334456667777776 7889999999999988887666544
No 184
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=84.82 E-value=21 Score=34.74 Aligned_cols=148 Identities=17% Similarity=0.106 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHhc----CC------CccchhHHHHHHHHhccChHHHHHHHh-cCCHHHHHHhcCCCChhHHHHHHHHHH
Q 041252 274 HRLLIGLMRLVKN----KR------HPNGILPGLSLLRSICLLNEVRSLVVS-IGAVPQLVELLPSLDPDCLQLALCILD 342 (450)
Q Consensus 274 ~g~l~~Lv~lL~~----~~------~~~~~~~al~aL~~Ls~~~~~~~~iv~-~G~v~~Lv~lL~~~~~~~~~~al~~L~ 342 (450)
.+++..|+.+|.. +. +......++.+|+.|..+......+.+ .+++..|+..|.+.++.++..++.+|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4567777777753 11 112355888999999988777777776 588999999999888999999999999
Q ss_pred HhcCChh--h-HHHHhc---------cCCChHHHHHHHhcC-ChHHHHHHHHHHHHhcccCch-----hHHHHHHhcChH
Q 041252 343 ALSSLPE--G-KLALKD---------CANTIPNTVRLLMRV-SEDCTQYALSILWSICKIAPE-----ECSSAAVDAGLA 404 (450)
Q Consensus 343 ~L~~~~e--~-r~~i~~---------~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~-----~~~~~~~~~G~i 404 (450)
.+|..++ | ...+.+ ...-...+|+.+... +...+-.++..+-.+....++ ..+.+....|..
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 9997643 5 444432 123455677777643 334444444444444444433 124555567775
Q ss_pred HHHHHHHHcCCCHHHHHH
Q 041252 405 AKLFLVIQSGCNPVLKQR 422 (450)
Q Consensus 405 ~~L~~ll~s~~~~~~k~~ 422 (450)
..+ .-++...++.+...
T Consensus 206 ~il-~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 206 QVL-QELREIENEDMKVQ 222 (386)
T ss_dssp HHH-HHHTTCCCHHHHHH
T ss_pred HHH-HHHhccCChhHHHH
Confidence 554 44444335554433
No 185
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=84.55 E-value=13 Score=40.94 Aligned_cols=184 Identities=12% Similarity=0.095 Sum_probs=103.8
Q ss_pred HHHHhhcc---chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCch------
Q 041252 154 LLGTLKKV---KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSE------ 224 (450)
Q Consensus 154 Lv~~L~~~---~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~------ 224 (450)
++..|.+. .+-+|..|++.|..++..- .... -...++.++..|.+. +..++..|+.+|.++....+
T Consensus 460 v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~--l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~ 534 (960)
T 1wa5_C 460 IAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQ--LIELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPA 534 (960)
T ss_dssp THHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHH--HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCC
T ss_pred hHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHH--HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhccccccccc
Confidence 34445655 5678999999999887531 1121 123467778777654 57789999999999776421
Q ss_pred ---hhhhccC--CCchHHHHHHhcCCC---HH--HHHHHHHHHHHHhcc-CCChhhHhhhhhHHHHHHHHHhc----CCC
Q 041252 225 ---SKTNLMQ--PAKVSLLVDMLNEGS---VE--TKINCTRLIEKLMEE-KDFRPEIVSSHRLLIGLMRLVKN----KRH 289 (450)
Q Consensus 225 ---~k~~i~~--~g~i~~Lv~lL~~~~---~~--~~~~aa~~L~~La~~-~~~~~~~~~~~g~l~~Lv~lL~~----~~~ 289 (450)
.+..+.. ...++.|..+++... .. ..+.+..+|..++.. .+..... ...+++.|+..+.. +.+
T Consensus 535 ~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~--~~~l~~~L~~~l~~~~~~~~~ 612 (960)
T 1wa5_C 535 FIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPL--FPQLLAQFIEIVTIMAKNPSN 612 (960)
T ss_dssp BSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGG--HHHHHHHHHHHHHHHTTSCCC
T ss_pred ccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHhCCCC
Confidence 2333432 345666677776641 11 234556666665421 1111111 22355566655543 223
Q ss_pred ccchhHHHHHHHHhcc--ChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhc
Q 041252 290 PNGILPGLSLLRSICL--LNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALS 345 (450)
Q Consensus 290 ~~~~~~al~aL~~Ls~--~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~ 345 (450)
+........+|..+.. .++.... .+.-.+|.+..+|.....+..+.++.++..+.
T Consensus 613 ~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 613 PRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 3344456677776663 2333222 33446778888886555566666666666554
No 186
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=84.29 E-value=5.9 Score=44.08 Aligned_cols=145 Identities=9% Similarity=-0.062 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCC--cc--chhHHHHHHHHhccChHHHHHHHhcCCHH
Q 041252 245 GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRH--PN--GILPGLSLLRSICLLNEVRSLVVSIGAVP 320 (450)
Q Consensus 245 ~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~--~~--~~~~al~aL~~Ls~~~~~~~~iv~~G~v~ 320 (450)
.+-..++.++.+++.++..-....+.-.-..+++.|+.++..+.. +. ++..++++|...+..-....... ..++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 468899999999999986543221111123467778887764211 11 22245566666653222111111 12445
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhc-cCC----ChHHH----HHHHhcCChHHHHHHHHHHHHhcccCc
Q 041252 321 QLVELLPSLDPDCLQLALCILDALSSLPEGKLALKD-CAN----TIPNT----VRLLMRVSEDCTQYALSILWSICKIAP 391 (450)
Q Consensus 321 ~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~-~~g----~i~~L----v~lL~~~s~~~~e~A~~~L~~L~~~~~ 391 (450)
.|++.|.+.++.+++.|+++|.+||.. .+..+.. ..| -++.+ .+.+...+......+..++..+....+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 577777777889999999999999963 3333321 011 23333 333333456666777777777776655
Q ss_pred h
Q 041252 392 E 392 (450)
Q Consensus 392 ~ 392 (450)
.
T Consensus 622 ~ 622 (1023)
T 4hat_C 622 S 622 (1023)
T ss_dssp S
T ss_pred C
Confidence 3
No 187
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=83.66 E-value=9.4 Score=36.72 Aligned_cols=107 Identities=14% Similarity=0.242 Sum_probs=81.7
Q ss_pred hcCCCc-hhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHH
Q 041252 218 NLTLDS-ESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPG 296 (450)
Q Consensus 218 ~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~a 296 (450)
+|-.++ +.-.-+++.+++..+..+.+-.+.++......+|...+.....+.. .-...+|-+++.+.-..+.++.-..
T Consensus 268 ~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~eDdvvYSG 345 (619)
T 3c2g_A 268 GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHPDDEVIYSG 345 (619)
T ss_dssp HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCCCcceEEec
Confidence 444444 5567889999999999999999999999999999988654433221 2234577788877755567788899
Q ss_pred HHHHHHhccChH-HHHHHHhcCCHHHHHHhc
Q 041252 297 LSLLRSICLLNE-VRSLVVSIGAVPQLVELL 326 (450)
Q Consensus 297 l~aL~~Ls~~~~-~~~~iv~~G~v~~Lv~lL 326 (450)
.+.|.|...+.. .+...+..|+|+.|-..+
T Consensus 346 TGFLSNVVAHKq~VKelAI~~nAI~LLh~~I 376 (619)
T 3c2g_A 346 TGFLSNVVAHKQHVKDIAIRSNAIFLLHTII 376 (619)
T ss_dssp HHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred chHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence 999999987765 666677899999998887
No 188
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=83.61 E-value=4.1 Score=34.71 Aligned_cols=78 Identities=12% Similarity=0.120 Sum_probs=61.5
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCC
Q 041252 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDT 437 (450)
Q Consensus 360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~ 437 (450)
++..|.+-|.+.++.++-.|+.+|-.+.+++......++.....+..|+.++....++.+|+++..++..-+..+.+.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345677778888899999999999999998865555566666777888888876567899999999998877765543
No 189
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=83.45 E-value=0.83 Score=41.93 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=16.0
Q ss_pred HHHHHHhhCChHHHHhhhCCCCChhhHHHHHH
Q 041252 183 ARKTMVDEGGVALISSLLGPFTSHAVGSEAVG 214 (450)
Q Consensus 183 ~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~ 214 (450)
.|...++.-..+.|..+++.. +..++..++.
T Consensus 90 VR~~aA~~L~~~~L~~ll~D~-d~~VR~~aA~ 120 (244)
T 1lrv_A 90 VRRAVAYRLPREQLSALMFDE-DREVRITVAD 120 (244)
T ss_dssp HHHHHHTTSCSGGGGGTTTCS-CHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHcCC-CHHHHHHHHH
Confidence 333333332345566666654 5666666555
No 190
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=81.78 E-value=4.4 Score=40.65 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=76.5
Q ss_pred CccchhHHHHHHHHhc-cChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHH
Q 041252 289 HPNGILPGLSLLRSIC-LLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRL 367 (450)
Q Consensus 289 ~~~~~~~al~aL~~Ls-~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~l 367 (450)
++..++-|+..+...- ..++-... ++.+++++..+.+..++..|++.|-.+|.. +.-..+.+ .|+++
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kiaD------vL~Ql 108 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVAD------ILTQL 108 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHHH------HHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHHH------HHHHH
Confidence 4556666666666554 33443332 456788888888889999999999999987 55555544 89999
Q ss_pred HhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041252 368 LMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLK 428 (450)
Q Consensus 368 L~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~ 428 (450)
|....+.-....-.+|..+-+.++ .|.+..|...+.++ .+.+|+++...|+
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dp---------k~tl~~lf~~i~~~-~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDA---------KGTLGGLFSQILQG-EDIVRERAIKFLS 159 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHhcCh---------HHHHHHHHHHHccc-chHHHHHHHHHHH
Confidence 997766555555555555555554 13344445555445 5778887665553
No 191
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=81.73 E-value=0.67 Score=42.57 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcccccccCCcchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCC
Q 041252 126 YHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTS 205 (450)
Q Consensus 126 ~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~ 205 (450)
...|..++..++. . +..++.+.+..+|..|+..| ....+..++... +
T Consensus 41 ~~ri~~~~~~~p~-----------l---~~~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~-~ 87 (244)
T 1lrv_A 41 GRQIDRFFRNNPH-----------L---AVQYLADPFWERRAIAVRYS------------------PVEALTPLIRDS-D 87 (244)
T ss_dssp HHHHHHHHHHCGG-----------G---GGGGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCS-S
T ss_pred HHHHHHHHcCCHH-----------H---HHHHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCc-C
Confidence 4567777766431 0 12234666777787777643 134566777665 6
Q ss_pred hhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHH
Q 041252 206 HAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTR 255 (450)
Q Consensus 206 ~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~ 255 (450)
..++..++..| . .+.|..+++..+..+|..++.
T Consensus 88 ~~VR~~aA~~L---~--------------~~~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 88 EVVRRAVAYRL---P--------------REQLSALMFDEDREVRITVAD 120 (244)
T ss_dssp HHHHHHHHTTS---C--------------SGGGGGTTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHC---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence 78888777542 1 123455566667777766665
No 192
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=81.11 E-value=66 Score=34.87 Aligned_cols=218 Identities=13% Similarity=0.075 Sum_probs=118.3
Q ss_pred ChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHh---cCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHH
Q 041252 205 SHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDML---NEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLM 281 (450)
Q Consensus 205 ~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL---~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv 281 (450)
+-..++.++.++..++..-.. .....++.++..+ ..+++.++..+++++..++..-......+ ..+++.|+
T Consensus 462 ~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l~ 535 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLPLVL 535 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHH
Confidence 334667777777776643211 0123455555554 23578899999999998864211111111 24567777
Q ss_pred HHHhcCCCccchhHHHHHHHHhccChHHHHHHHh--cCCHHHHHHhcCC--CChhHHHHHHHHHHHhcCC--hhhHHHHh
Q 041252 282 RLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVS--IGAVPQLVELLPS--LDPDCLQLALCILDALSSL--PEGKLALK 355 (450)
Q Consensus 282 ~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~--~G~v~~Lv~lL~~--~~~~~~~~al~~L~~L~~~--~e~r~~i~ 355 (450)
..+.+ +.++..|+.+|.+++.. .+..+.. ...+..|..++.. .+...+..+..++..++.. ++.+....
T Consensus 536 ~~l~~---~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~ 610 (963)
T 2x19_B 536 HALGN---PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL 610 (963)
T ss_dssp HHTTC---GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHhCC---chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 76643 67889999999999832 1111221 1233344455543 3567888888888888754 25555555
Q ss_pred ccCCChHHHHHHHhc----C-ChHHHH---HHHHHHHHhccc----Cchh----------------HHHHHHhcChHHHH
Q 041252 356 DCANTIPNTVRLLMR----V-SEDCTQ---YALSILWSICKI----APEE----------------CSSAAVDAGLAAKL 407 (450)
Q Consensus 356 ~~~g~i~~Lv~lL~~----~-s~~~~e---~A~~~L~~L~~~----~~~~----------------~~~~~~~~G~i~~L 407 (450)
+ ..++++...+.. . ++..+. ....+|..+.+. .+.. ...........+.+
T Consensus 611 ~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (963)
T 2x19_B 611 H--SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLI 688 (963)
T ss_dssp H--HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHH
Confidence 4 456666665542 1 333333 233333333221 1000 00111233456666
Q ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHhhcC
Q 041252 408 FLVIQS-GCNPVLKQRSAELLKLCSLNYT 435 (450)
Q Consensus 408 ~~ll~s-~~~~~~k~~A~~lL~~ls~~~~ 435 (450)
..++.. ..++...+.+..+++.+.....
T Consensus 689 ~~~l~~~~~~~~v~e~~~~~l~~~~~~~~ 717 (963)
T 2x19_B 689 QKVLSKWLNDAQVVEAVCAIFEKSVKTLL 717 (963)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHHhhc
Confidence 666643 2356778888888887655533
No 193
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=80.45 E-value=3.9 Score=36.89 Aligned_cols=78 Identities=9% Similarity=0.151 Sum_probs=61.2
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCC
Q 041252 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDT 437 (450)
Q Consensus 360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~ 437 (450)
++..|.+-|.+.++.++-.|+.+|-.+.++.......++.....+..|..++....++.+|++...++..-+...++.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 355677888888999999999999999888765555566566666777778877667899999999999888775543
No 194
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=80.30 E-value=5.8 Score=40.78 Aligned_cols=185 Identities=16% Similarity=0.115 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccC-CCchHHHHHHh
Q 041252 164 QARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQ-PAKVSLLVDML 242 (450)
Q Consensus 164 ~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL 242 (450)
-+|+.++++|..+ ..=+.. ...+..++..+... .=+++..++-.|..+ +..+.+ .+.++.++.-|
T Consensus 243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSG-DWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLL 308 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHT
T ss_pred ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCC-CeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhc
Confidence 4888899888887 421211 23344444433433 346787787777777 222222 56778888888
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCC-ccchhHHHHHHHHhccChHHHHHHHhcCCHHH
Q 041252 243 NEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRH-PNGILPGLSLLRSICLLNEVRSLVVSIGAVPQ 321 (450)
Q Consensus 243 ~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~-~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~ 321 (450)
...+.++|..||.+|.-++ ..+. -..++..|-..|.+-.+ .......+..|..|+..+.+ .......||.
T Consensus 309 ~D~DDDVRAVAAetLiPIA-~p~~------l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPR 379 (800)
T 3oc3_A 309 SSPDEDIKLLSAELLCHFP-ITDS------LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKD 379 (800)
T ss_dssp TCSSHHHHHHHHHHHTTSC-CSST------HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGG
T ss_pred CCcccHHHHHHHHHhhhhc-chhh------HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHH
Confidence 8889999999999999987 2211 13345555566654312 22344566777787765531 1112367888
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHH-HHHHhcCChHHHHHHHHH
Q 041252 322 LVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNT-VRLLMRVSEDCTQYALSI 382 (450)
Q Consensus 322 Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~L-v~lL~~~s~~~~e~A~~~ 382 (450)
|..+++..-..++..++.+|..+.. . ..++.+ -.+|....+.+.+.+..+
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL~-~----------~~LRLIFQNILLE~neeIl~lS~~V 430 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLSE-E----------SIDFLVAEVVLIEEKDEIREMAIKL 430 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCCC-H----------HHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHHh-h----------hHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 8889998889999999999988871 1 122222 233445566777766665
No 195
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=80.02 E-value=1.5 Score=33.74 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=39.0
Q ss_pred CCeeeCcCCCCCCCCCeeCC-C-C----CcccHHHHHHHHhcCCCCCCCcCCcCCCCCC
Q 041252 67 PSVFVCPISLEPMQDPVTLC-T-G----QTYERSNILKWFSLGRYTCPTTMQELWDDSV 119 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~~-~-g----~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 119 (450)
++++.|||+.++-..=|-+. . | --|+..++.+....|.. =|.+|++++...+
T Consensus 25 ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~-HPLSREpit~sMI 82 (102)
T 2kkx_A 25 LEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLP-HPLTREPITASII 82 (102)
T ss_dssp TGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCC-CTTTCCCCCTTTE
T ss_pred HHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCC-CCCccCCCCHhhE
Confidence 46789999999888877543 2 2 24999999999887543 4999988876543
No 196
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=79.83 E-value=45 Score=32.13 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=85.9
Q ss_pred HHHhccChH-HHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC-ChHHHH
Q 041252 300 LRSICLLNE-VRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV-SEDCTQ 377 (450)
Q Consensus 300 L~~Ls~~~~-~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~-s~~~~e 377 (450)
|.+|-.++. ...-+|.+.+|..+-.++.-.+.++....++.|...+....-...=. ...+|-+++.+..+ .+.+.-
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcceEE
Confidence 445555554 46778999999999999988899999999999999987643332222 35788888888654 578888
Q ss_pred HHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHH
Q 041252 378 YALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQ 412 (450)
Q Consensus 378 ~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~ 412 (450)
...+.|.|+..+.. .+...++..|+++.|...+-
T Consensus 344 SGTGFLSNVVAHKq-~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQ-HVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHSTTCH-HHHHHHHHTTHHHHHHHHHH
T ss_pred ecchHHHHHHhccc-chHHHHhccCcHHHHHHHHh
Confidence 99999999988874 56778889999999988773
No 197
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=79.77 E-value=0.4 Score=29.45 Aligned_cols=16 Identities=19% Similarity=0.586 Sum_probs=12.8
Q ss_pred eeeCcCCCCCCCCCee
Q 041252 69 VFVCPISLEPMQDPVT 84 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~ 84 (450)
-|+||+|+.-+..|-.
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 4999999988877754
No 198
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=79.72 E-value=74 Score=34.60 Aligned_cols=212 Identities=10% Similarity=-0.030 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHh---c--CCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHH
Q 041252 207 AVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDML---N--EGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLM 281 (450)
Q Consensus 207 ~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL---~--~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv 281 (450)
..++.|+.++..++..-.... ...++.++.++ . ..++.+|..++++|..++..-...... -..+++.|+
T Consensus 479 ~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~vl~~l~ 552 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPPAINLLV 552 (971)
T ss_dssp HHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHH
Confidence 467777888777764321111 13344444443 3 237889999999999987431111111 134567777
Q ss_pred HHHhcCCCccchhHHHHHHHHhccChHHHHHHHh--cCCHHHHHHhcCC--CChhHHHHHHHHHHHhcCC--hhhHHHHh
Q 041252 282 RLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVS--IGAVPQLVELLPS--LDPDCLQLALCILDALSSL--PEGKLALK 355 (450)
Q Consensus 282 ~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~--~G~v~~Lv~lL~~--~~~~~~~~al~~L~~L~~~--~e~r~~i~ 355 (450)
..+ + +.++..|+.+|.+++.. .+..+.. ...+..|..++.. .+...+..+..++..++.. ++.+....
T Consensus 553 ~~l-~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~ 626 (971)
T 2x1g_F 553 RGL-N---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL 626 (971)
T ss_dssp HHH-H---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHh-C---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 777 2 56899999999999932 2233332 2455566666765 3567888888888887653 24444444
Q ss_pred ccCCChHHHHHHHhc----C--ChHHHHHHHHHHHHhcccC----c-----------hhHHHHHHhcChHHHHHHHHHcC
Q 041252 356 DCANTIPNTVRLLMR----V--SEDCTQYALSILWSICKIA----P-----------EECSSAAVDAGLAAKLFLVIQSG 414 (450)
Q Consensus 356 ~~~g~i~~Lv~lL~~----~--s~~~~e~A~~~L~~L~~~~----~-----------~~~~~~~~~~G~i~~L~~ll~s~ 414 (450)
+ ..++++++.+.. . ++..+......|..|+.-- + .+.. .-....+++.+..++...
T Consensus 627 ~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~l~~~ 703 (971)
T 2x1g_F 627 D--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPV-LLVMQRTMPIFKRIAEMW 703 (971)
T ss_dssp H--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CC-HHHHHTTHHHHHHHHHHT
T ss_pred H--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCch-HHHHHHHHHHHHHHHHhc
Confidence 3 345555554432 1 2222333333333332110 0 0000 112245677777777543
Q ss_pred -CCHHHHHHHHHHHHHHHhh
Q 041252 415 -CNPVLKQRSAELLKLCSLN 433 (450)
Q Consensus 415 -~~~~~k~~A~~lL~~ls~~ 433 (450)
.++.+.+.+..+++.+...
T Consensus 704 ~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 704 VEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHh
Confidence 3567778888877775444
No 199
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=77.75 E-value=6.7 Score=32.42 Aligned_cols=77 Identities=12% Similarity=0.160 Sum_probs=58.6
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCC
Q 041252 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTDT 437 (450)
Q Consensus 360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~~ 437 (450)
++..+.+-|.+.++.++-.|+.+|-.+.+++......++.....+..|..++... ++.+|++...++..-+..+++.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~-~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG-HPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhCCC
Confidence 3556777788888999999999999998888655555555556667777777554 7899999999999877765543
No 200
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=77.44 E-value=0.63 Score=27.20 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=13.0
Q ss_pred CCeeeCcCCCCCCCCCe
Q 041252 67 PSVFVCPISLEPMQDPV 83 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv 83 (450)
|..|.||+|+.-|-||=
T Consensus 1 ~~k~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDMD 17 (28)
T ss_dssp CCCEECTTSSCEESSHH
T ss_pred CCcccCccccccCcChH
Confidence 45788999998777764
No 201
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=77.04 E-value=6.5 Score=35.16 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=59.9
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCC
Q 041252 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVLKQRSAELLKLCSLNYTD 436 (450)
Q Consensus 360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~k~~A~~lL~~ls~~~~~ 436 (450)
++..|.+-|.+.++.++..|+.+|-.+.++.......++.....+..|..++.+..+..+|+++..++..-+...++
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 34467777788889999999999999998886545555555667788888887766789999999999887766543
No 202
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=74.92 E-value=6.3 Score=33.83 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=61.6
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHhhc
Q 041252 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS-----GCNPVLKQRSAELLKLCSLNY 434 (450)
Q Consensus 360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s-----~~~~~~k~~A~~lL~~ls~~~ 434 (450)
++..|.+-|.+.++.++-.|+.+|-.+.+++......++.....+.-|+.++.. ..+..+|+++..++..-+...
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 355777888888999999999999999998865555666667778888888752 245899999999999888776
Q ss_pred CCCc
Q 041252 435 TDTT 438 (450)
Q Consensus 435 ~~~~ 438 (450)
.+.+
T Consensus 131 ~~~~ 134 (171)
T 1juq_A 131 PEEA 134 (171)
T ss_dssp TTCH
T ss_pred CCCc
Confidence 5443
No 203
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=73.97 E-value=50 Score=36.64 Aligned_cols=217 Identities=11% Similarity=0.087 Sum_probs=127.3
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC------Cc
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL------DS 223 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~------~~ 223 (450)
.++.++..+.+++.+.|.+|-+.|..+- .++ ++...+..+|....+..++.-|+.+|.+... ++
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q-~sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~ 86 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQ-DNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-HCT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHH-cCc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 4666777776666667777777777653 222 3455556666544467888888888887432 33
Q ss_pred hhhhhccCCCchHHHHHHhcCC-----CHHHHHHHHHHHHHHhccC-CChhhHhhhhhHHHHHHHHHhcCCCccchhHHH
Q 041252 224 ESKTNLMQPAKVSLLVDMLNEG-----SVETKINCTRLIEKLMEEK-DFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGL 297 (450)
Q Consensus 224 ~~k~~i~~~g~i~~Lv~lL~~~-----~~~~~~~aa~~L~~La~~~-~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al 297 (450)
+.+..+ ....+..+...-..+ ..-++...+.++..++... ... =...++.|+.++.. ++......+
T Consensus 87 e~~~~I-r~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~-----Wp~~l~dL~~~l~~--~~~~~~~~L 158 (1023)
T 4hat_C 87 DHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-----WPEFIPELIGSSSS--SVNVCENNM 158 (1023)
T ss_dssp HHHHHH-HHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHTTT--CHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhh-----chHHHHHHHHHhcC--CHHHHHHHH
Confidence 333333 223344444432211 2445556777777775332 111 13467788887754 244466677
Q ss_pred HHHHHhccC---------hHH-----HHHHHhc--CCHHHHHHhcC-CCChhHHHHHHHHHHHhcCChhhHHHHhccCCC
Q 041252 298 SLLRSICLL---------NEV-----RSLVVSI--GAVPQLVELLP-SLDPDCLQLALCILDALSSLPEGKLALKDCANT 360 (450)
Q Consensus 298 ~aL~~Ls~~---------~~~-----~~~iv~~--G~v~~Lv~lL~-~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~ 360 (450)
..|..|+.. ... +..+.+. .++..+..+|. ..+.++...++.+|......-. -..+.+ ...
T Consensus 159 ~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~-i~~i~~-~~l 236 (1023)
T 4hat_C 159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP-YRYIYE-TNI 236 (1023)
T ss_dssp HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC-THHHHS-SSH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC-HHHhcc-hhH
Confidence 777776411 111 2222332 23334444443 3467788889999998877522 223444 578
Q ss_pred hHHHH-HHHhcCChHHHHHHHHHHHHhcc
Q 041252 361 IPNTV-RLLMRVSEDCTQYALSILWSICK 388 (450)
Q Consensus 361 i~~Lv-~lL~~~s~~~~e~A~~~L~~L~~ 388 (450)
++.+. +.+. ++..++.|+.+|..+..
T Consensus 237 l~~l~~~~L~--~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 237 LELLSTKFMT--SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HHHHHTHHHH--SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHHHc
Confidence 88888 7765 57899999999999876
No 204
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=73.85 E-value=9.9 Score=31.79 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=61.9
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHhhc
Q 041252 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS-----GCNPVLKQRSAELLKLCSLNY 434 (450)
Q Consensus 360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s-----~~~~~~k~~A~~lL~~ls~~~ 434 (450)
++..|.+-|.+.++.++-.|+.+|-.+.+++......++.....+.-|+.++.. ..++.+|++...++..-+...
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 455777888888999999999999999998876655666666777888888852 246899999999999888776
Q ss_pred CCCc
Q 041252 435 TDTT 438 (450)
Q Consensus 435 ~~~~ 438 (450)
++.+
T Consensus 129 ~~~p 132 (149)
T 3g2s_A 129 PEEV 132 (149)
T ss_dssp TTCH
T ss_pred CCCc
Confidence 5543
No 205
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=72.87 E-value=68 Score=35.31 Aligned_cols=220 Identities=11% Similarity=0.054 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhcc---chHHHHHHHHHHHHHHHH-cHH----HHHHHHhhCCh
Q 041252 122 NKTLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKV---KGQARVQALKELHQIAAA-HAS----ARKTMVDEGGV 193 (450)
Q Consensus 122 n~~L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~---~~~~~~~Al~~L~~l~~~-~~~----~r~~i~~~G~i 193 (450)
+...++..++|+.+-. ...+ ........|.+. +.++|.-|+..|++..+. +++ .+..+. .-.+
T Consensus 21 d~~~r~~A~~~L~~~q----~sp~----aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr-~~ll 91 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLR----SSST----GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR-DSVW 91 (980)
T ss_dssp CHHHHHHHHHHHHHHH----HSTT----HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHH----cChh----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH-HHHH
Confidence 4566777888877521 1111 222344455443 567888899999887762 122 233322 2233
Q ss_pred HHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCH-HHHHHHHHHHHHHhcc---CCC---
Q 041252 194 ALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSV-ETKINCTRLIEKLMEE---KDF--- 266 (450)
Q Consensus 194 ~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~-~~~~~aa~~L~~La~~---~~~--- 266 (450)
..+...-......-++.....+|..+...+-.. .=+..++-++.++++++. ........+|..|.++ ...
T Consensus 92 ~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~---~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~ 168 (980)
T 3ibv_A 92 SYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS---NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKT 168 (980)
T ss_dssp HHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCC
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc---cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccC
Confidence 333331101123456667777776665432000 115678888888876543 3334444455544322 010
Q ss_pred -----h----hhHhhhh---hHHHHHHHHHhc---CCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCCh
Q 041252 267 -----R----PEIVSSH---RLLIGLMRLVKN---KRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDP 331 (450)
Q Consensus 267 -----~----~~~~~~~---g~l~~Lv~lL~~---~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~ 331 (450)
+ ++.+.+. .+.+....+|.. ..++.....++.+|.....+-+. ..+++...++.+..+|.+ +
T Consensus 169 ~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~~~~ll~~l~~~L~~--~ 245 (980)
T 3ibv_A 169 DVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSFLQI--E 245 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHHCHHHHHHHHHHTTS--H
T ss_pred HHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-HhhhcchHHHHHHHHcCC--h
Confidence 0 1122111 113333444432 12566677888888877765433 355667788888888864 7
Q ss_pred hHHHHHHHHHHHhcCC---hhhHHHHhc
Q 041252 332 DCLQLALCILDALSSL---PEGKLALKD 356 (450)
Q Consensus 332 ~~~~~al~~L~~L~~~---~e~r~~i~~ 356 (450)
++++.|+.+|..+... ++.+..+..
T Consensus 246 ~~r~~A~ecL~ei~~k~~~~~~k~~li~ 273 (980)
T 3ibv_A 246 ELRCAACETMTEIVNKKMKPLEKLNLLN 273 (980)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChhhHHHHHH
Confidence 8999999999888744 556555554
No 206
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=71.14 E-value=8.5 Score=32.15 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=61.5
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHhhc
Q 041252 360 TIPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQS-----GCNPVLKQRSAELLKLCSLNY 434 (450)
Q Consensus 360 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s-----~~~~~~k~~A~~lL~~ls~~~ 434 (450)
++..|.+-|.+.++.++-.|+.+|-.+.+++......++.....+.-|+.++.. ..++.+|++...++..-+...
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 455777888888999999999999999998865555666666777778777753 246899999999999888776
Q ss_pred CCCc
Q 041252 435 TDTT 438 (450)
Q Consensus 435 ~~~~ 438 (450)
++.+
T Consensus 119 ~~~p 122 (148)
T 1mhq_A 119 PEDI 122 (148)
T ss_dssp TTCH
T ss_pred CCCc
Confidence 5543
No 207
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=69.59 E-value=13 Score=33.73 Aligned_cols=141 Identities=18% Similarity=0.090 Sum_probs=89.9
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc--ChHHHHH
Q 041252 235 VSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL--LNEVRSL 312 (450)
Q Consensus 235 i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~--~~~~~~~ 312 (450)
++..-.+..+...++|..|+.+|..+ . .. ...++.+-..+....+..++..++.++..++. +++
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~--~~-------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD-------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS-------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc-------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence 34444555667789999999988877 2 11 22345555534444467788888888888874 222
Q ss_pred HHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHhccC-CChHHHHHHHhcCChHHHHHHHHHHHHhcccCc
Q 041252 313 VVSIGAVPQLVELLPSLDPDCLQLALCILDALSSLPEGKLALKDCA-NTIPNTVRLLMRVSEDCTQYALSILWSICKIAP 391 (450)
Q Consensus 313 iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~-g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 391 (450)
-.++.+.....+.+..++..|...+.--+..+ .+..+. -.++.|-.+....+.-++......|..+++.+|
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~----~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRP----YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGST----TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccc----hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 15677888888899999998887765323221 111101 134444444455677888888899999999998
Q ss_pred hhHHHH
Q 041252 392 EECSSA 397 (450)
Q Consensus 392 ~~~~~~ 397 (450)
+-+...
T Consensus 211 d~V~~~ 216 (240)
T 3l9t_A 211 DLVKIE 216 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654433
No 208
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=69.11 E-value=54 Score=36.25 Aligned_cols=220 Identities=11% Similarity=0.084 Sum_probs=122.1
Q ss_pred cHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcC------CCc
Q 041252 150 RASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLT------LDS 223 (450)
Q Consensus 150 ~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls------~~~ 223 (450)
.+..++..+.+++.+.|..|-+.|..+- .++ ++...+..+|.+..+..++.-|+.+|.+.. .++
T Consensus 17 ~l~~~l~~~~~p~~~~r~~Ae~~L~~~~-~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~ 86 (1049)
T 3m1i_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQ-DNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1049)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-HST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHH-hCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence 3445555555555667777777777663 222 456666777754446788888998888843 233
Q ss_pred hhhhhccCCCchHHHHHHhcCC-----CHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHH
Q 041252 224 ESKTNLMQPAKVSLLVDMLNEG-----SVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLS 298 (450)
Q Consensus 224 ~~k~~i~~~g~i~~Lv~lL~~~-----~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~ 298 (450)
+.|..|. ...+..+...-... +..++...+.++..++...-. .. =.++++.|+..++. ++.....++.
T Consensus 87 ~~~~~ir-~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~---Wp~ll~~L~~~~~~--~~~~~~~~l~ 159 (1049)
T 3m1i_C 87 DHRIGIR-NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QN---WPEFIPELIGSSSS--SVNVCENNMI 159 (1049)
T ss_dssp HHHHHHH-HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TT---CTTHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-cc---chHHHHHHHHHHcc--ChHHHHHHHH
Confidence 4444332 12222222221111 356777788888888643211 00 13567888888762 3445667788
Q ss_pred HHHHhccC---------hHHH-----HHHHhc--CCHHHHHHhcC-CCChhHHHHHHHHHHHhcCChhhHHHHhccCCCh
Q 041252 299 LLRSICLL---------NEVR-----SLVVSI--GAVPQLVELLP-SLDPDCLQLALCILDALSSLPEGKLALKDCANTI 361 (450)
Q Consensus 299 aL~~Ls~~---------~~~~-----~~iv~~--G~v~~Lv~lL~-~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i 361 (450)
+|..|+.. ...| ..+.+. ..+..+..+|. ..+..++..++.++......-..- .+.+ ...+
T Consensus 160 ~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~-~~~~-~~ll 237 (1049)
T 3m1i_C 160 VLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYR-YIYE-TNIL 237 (1049)
T ss_dssp HHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTH-HHHS-SSHH
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHH-HHhh-hhHH
Confidence 88877621 0111 223321 12333344443 235678888999998766542211 1333 3555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhccc
Q 041252 362 PNTVRLLMRVSEDCTQYALSILWSICKI 389 (450)
Q Consensus 362 ~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 389 (450)
+.+.+.+. .++..+..|+.+|..+...
T Consensus 238 ~~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 238 ELLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 55553322 2677788888888877654
No 209
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=68.26 E-value=0.18 Score=38.64 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=25.4
Q ss_pred eeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 70 FVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
..||.|++.|. + ..|+.+|..|=..+ .. ...||.|+++|.
T Consensus 33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~f-~~-~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLD-Q---DNGHARCRSCGEFI-EM-KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEE-E---ETTEEEETTTCCEE-EE-EEECTTTCSBCE
T ss_pred ccCccCCCcce-e---cCCEEECccccchh-hc-cccCcchhhHHH
Confidence 57999998775 2 23444477762211 11 356999999875
No 210
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=66.84 E-value=40 Score=28.40 Aligned_cols=71 Identities=10% Similarity=0.050 Sum_probs=54.8
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHH-cHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhc
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAA-HASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNL 219 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~L 219 (450)
..+..|.+.|++.++.++..|+..|..+.++ .......|.....+..|+.++....+..+++.++..+..-
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 4566778888888899999999999999887 3556677777777788888886544667888888777653
No 211
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=65.44 E-value=74 Score=35.42 Aligned_cols=218 Identities=10% Similarity=0.098 Sum_probs=128.0
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC------C
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL------D 222 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~------~ 222 (450)
..++.++..+-+++.+.|..|-+.|..+- .++ ++...+..+|..+.+..++.-|+.+|.+... .
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q-~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~ 97 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLK-EHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILP 97 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSS-CCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHH-cCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence 34667777777777777777777776553 233 3345555666655577888889988887432 2
Q ss_pred chhhhhccCCCchHHHHHHhcC-----CCHHHHHHHHHHHHHHhccC-CChhhHhhhhhHHHHHHHHHhcCCCccchhHH
Q 041252 223 SESKTNLMQPAKVSLLVDMLNE-----GSVETKINCTRLIEKLMEEK-DFRPEIVSSHRLLIGLMRLVKNKRHPNGILPG 296 (450)
Q Consensus 223 ~~~k~~i~~~g~i~~Lv~lL~~-----~~~~~~~~aa~~L~~La~~~-~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~a 296 (450)
++.+..+ ....+..+...-.. .++..+...+.++..++... ... =...++.++.++.. ++......
T Consensus 98 ~e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~--~~~~~~~~ 169 (1073)
T 3gjx_A 98 RNQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRT--SESLCQNN 169 (1073)
T ss_dssp HHHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHH--CHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCC--CHHHHHHH
Confidence 3333333 22234444443222 24566667777777775321 111 03456777777654 24456677
Q ss_pred HHHHHHhccC--h-------H-----HHHHHHhcCCHHHHHHhc-----CCCChhHHHHHHHHHHHhcCChhhHHHHhcc
Q 041252 297 LSLLRSICLL--N-------E-----VRSLVVSIGAVPQLVELL-----PSLDPDCLQLALCILDALSSLPEGKLALKDC 357 (450)
Q Consensus 297 l~aL~~Ls~~--~-------~-----~~~~iv~~G~v~~Lv~lL-----~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~ 357 (450)
+..|..|+.. + . .+..+.+. ++.++.++ ...++++...++.+|....+.-.. ..+.+
T Consensus 170 L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~- 245 (1073)
T 3gjx_A 170 MVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFE- 245 (1073)
T ss_dssp HHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHS-
T ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhcc-
Confidence 7777777621 1 0 12233332 45555544 335778888899999999877322 23555
Q ss_pred CCChHHHH-HHHhcCChHHHHHHHHHHHHhcccC
Q 041252 358 ANTIPNTV-RLLMRVSEDCTQYALSILWSICKIA 390 (450)
Q Consensus 358 ~g~i~~Lv-~lL~~~s~~~~e~A~~~L~~L~~~~ 390 (450)
.+.++.++ +.| .++..+..|+.+|..+....
T Consensus 246 ~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~ 277 (1073)
T 3gjx_A 246 TKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVS 277 (1073)
T ss_dssp SSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHhc--CChHHHHHHHHHHHHHHhcc
Confidence 56676664 444 36788999999999987653
No 212
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=65.14 E-value=2.3 Score=34.22 Aligned_cols=51 Identities=10% Similarity=0.071 Sum_probs=39.9
Q ss_pred CCeeeCcCCCCCCCC---CeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCC
Q 041252 67 PSVFVCPISLEPMQD---PVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDS 118 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d---Pv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 118 (450)
|+-|.|..|+..+.| +.....|..||+.+..+-+.. ...|..|++++....
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEE
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchh
Confidence 456999999999974 567789999999999887653 347999988776533
No 213
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=63.92 E-value=1.6 Score=32.14 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=29.0
Q ss_pred eeCcCCCCCCC--CCe--eCCCC----CcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcch
Q 041252 70 FVCPISLEPMQ--DPV--TLCTG----QTYERSNILKWFSLGRYTCPTTMQELWDDSVTPN 122 (450)
Q Consensus 70 ~~Cpi~~~~m~--dPv--~~~~g----~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n 122 (450)
-.||||+..+. +-+ ++.-+ ---+|...-+-+..=.+.||.|+..+.-..+..+
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~~ 69 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRR 69 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTT
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCChH
Confidence 46999987654 100 11111 0124544444444434579999998876666544
No 214
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=62.57 E-value=29 Score=31.05 Aligned_cols=72 Identities=7% Similarity=0.100 Sum_probs=56.0
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHc-HHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcC
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAH-ASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLT 220 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls 220 (450)
..+..|.+.|.+.++.++..||..|..++++. ......|.....+..|..+++...+..+++.++.++...+
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999998863 3456677777777778888866556788888888887644
No 215
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=62.44 E-value=6.3 Score=28.96 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=31.3
Q ss_pred CeeeCcCCCCCCCCCeeCC----CCCcccHHHHHHHHhc----CCCCCCCc
Q 041252 68 SVFVCPISLEPMQDPVTLC----TGQTYERSNILKWFSL----GRYTCPTT 110 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~----~g~ty~r~~I~~~~~~----~~~~cP~~ 110 (450)
..+.|.+|++-+.|.--+. .+|.||--|-.+.++. +.-+||.-
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 3578999999999965443 3799998888777763 23457754
No 216
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=61.37 E-value=64 Score=27.38 Aligned_cols=72 Identities=14% Similarity=0.072 Sum_probs=56.4
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHc-HHHHHHHHhhCChHHHHhhhCC-----CCChhhHHHHHHHHHhcC
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAH-ASARKTMVDEGGVALISSLLGP-----FTSHAVGSEAVGVLVNLT 220 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~-----~~~~~v~~~Al~~L~~Ls 220 (450)
..+..|...|++.++.++..|+..|..+.++. ......|.+...+..|+.++.. ..+..+++.++.++..-+
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45667788888889999999999999999873 5677778888888888988863 235678888888887643
No 217
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=61.33 E-value=5.5 Score=34.18 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=7.8
Q ss_pred CCCCCCcCCc
Q 041252 104 RYTCPTTMQE 113 (450)
Q Consensus 104 ~~~cP~~~~~ 113 (450)
...||.|+.+
T Consensus 153 p~~CP~Cg~~ 162 (170)
T 3pwf_A 153 PEYCPVCGAP 162 (170)
T ss_dssp CSBCTTTCCB
T ss_pred CCCCCCCCCC
Confidence 4589999865
No 218
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=58.62 E-value=6.1 Score=31.90 Aligned_cols=49 Identities=12% Similarity=0.225 Sum_probs=38.8
Q ss_pred CCeeeCcCCCCCCC---CCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 67 PSVFVCPISLEPMQ---DPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 67 p~~~~Cpi~~~~m~---dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
|+.|.|..|+..+. .+.....|.-||+.+..+-+.. ...|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 56799999999996 3677789999999998876542 2379999887754
No 219
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=58.47 E-value=2.8 Score=23.49 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=8.5
Q ss_pred eeeCcCCCCCCC
Q 041252 69 VFVCPISLEPMQ 80 (450)
Q Consensus 69 ~~~Cpi~~~~m~ 80 (450)
...||+|++.|-
T Consensus 6 ~vqcpvcqq~mp 17 (29)
T 3vhs_A 6 QVQCPVCQQMMP 17 (29)
T ss_dssp EEECTTTCCEEE
T ss_pred eeeChHHHHhCc
Confidence 356888888764
No 220
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=57.99 E-value=1.1e+02 Score=34.00 Aligned_cols=153 Identities=17% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhC--
Q 041252 124 TLYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLG-- 201 (450)
Q Consensus 124 ~L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~-- 201 (450)
++..+|..+|..+.. ...+.+......+...+.+.+.+.+..++++|.++-.... ++.|..++.
T Consensus 418 a~gslV~k~c~~~~~---c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~-----------l~~l~~~l~~~ 483 (1056)
T 1lsh_A 418 GYGSLVFRYCANTVS---CPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNS-----------IKKIQRFLPGQ 483 (1056)
T ss_dssp HHHHHHHHHHTTCSS---CCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGG-----------HHHHHTTSTTS
T ss_pred HHHHHHHHHhccCCC---CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhH-----------HHHHHHhhcCc
Q ss_pred ----CCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHh--cCCCHHHHHHHHHHHHHHhccCCChhhHhhhhh
Q 041252 202 ----PFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDML--NEGSVETKINCTRLIEKLMEEKDFRPEIVSSHR 275 (450)
Q Consensus 202 ----~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL--~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g 275 (450)
......++..|+.+|+.++.....+.. +.+..+. ...+.++|..|..+|..- --...
T Consensus 484 ~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~-------~il~~i~~n~~e~~EvRiaA~~~Lm~t----------~P~~~ 546 (1056)
T 1lsh_A 484 GKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ-------EIVLPIFLNVAIKSELRIRSCIVFFES----------KPSVA 546 (1056)
T ss_dssp SSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH-------HHHHHHHHCTTSCHHHHHHHHHHHHHT----------CCCHH
T ss_pred cccccccchHHHHHHHHHHHHhhhhchHHHH-------HHHHHHhcCCCCChHHHHHHHHHHHHH----------CcCHH
Q ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHhccCh
Q 041252 276 LLIGLMRLVKNKRHPNGILPGLSLLRSICLLN 307 (450)
Q Consensus 276 ~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~ 307 (450)
.+..+...+..+.+..+.......|.+++...
T Consensus 547 ~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 547 LVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
No 221
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=57.79 E-value=7.6 Score=31.09 Aligned_cols=47 Identities=9% Similarity=0.039 Sum_probs=37.8
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
|+.|.|..|+..+.+ +.....|.-||+.+..+- -...|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN---HAVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH---SCCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcC---cCccCcccCCcCCc
Confidence 567999999998886 666789999999997664 34679999988764
No 222
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=57.36 E-value=27 Score=29.24 Aligned_cols=77 Identities=9% Similarity=0.103 Sum_probs=56.1
Q ss_pred ChHHHHHHHhc-CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHH-HHHHHHc--CCCHHHHHHHHHHHHHHHhhcC
Q 041252 360 TIPNTVRLLMR-VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAK-LFLVIQS--GCNPVLKQRSAELLKLCSLNYT 435 (450)
Q Consensus 360 ~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~-L~~ll~s--~~~~~~k~~A~~lL~~ls~~~~ 435 (450)
++..|.+-|.+ .++.++-.|+.+|-.+.+++......++.....+.- |+.++.. .....+|+++..++..-+...+
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 34567777764 678899999999999999886555556666667776 6777732 2345899999999988777654
Q ss_pred C
Q 041252 436 D 436 (450)
Q Consensus 436 ~ 436 (450)
+
T Consensus 134 ~ 134 (157)
T 1elk_A 134 S 134 (157)
T ss_dssp T
T ss_pred C
Confidence 3
No 223
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=56.79 E-value=49 Score=36.61 Aligned_cols=143 Identities=8% Similarity=-0.053 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcC----CCccchhHHHHHHHHhccChHHHHHHHhcCCHH
Q 041252 245 GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNK----RHPNGILPGLSLLRSICLLNEVRSLVVSIGAVP 320 (450)
Q Consensus 245 ~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~----~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~ 320 (450)
.+...++.|..++..++..-....+--.-..+++.|+.+.... .++-++..+++++...+..-....... ..+++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-~~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHH
Confidence 4677888899999988643211100000112333333322211 012122245566666653221111221 23567
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhcCChhhHHHHh-ccC--------CChHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 041252 321 QLVELLPSLDPDCLQLALCILDALSSLPEGKLALK-DCA--------NTIPNTVRLLMRVSEDCTQYALSILWSICKIA 390 (450)
Q Consensus 321 ~Lv~lL~~~~~~~~~~al~~L~~L~~~~e~r~~i~-~~~--------g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 390 (450)
.|++.|.+.++.++..|+.+|.+++.. .+..+. ... ..+..+..++...+.........++..+....
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~--~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHH--HHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 788888888899999999999999963 233332 001 12333334444444444455555555554433
No 224
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=55.64 E-value=86 Score=25.84 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=56.8
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHH-cHHHHHHHHhhCChHHHHhhhCC-----CCChhhHHHHHHHHHhcC
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAA-HASARKTMVDEGGVALISSLLGP-----FTSHAVGSEAVGVLVNLT 220 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~-----~~~~~v~~~Al~~L~~Ls 220 (450)
..+..+...|++.++.++..|+..|..++++ .......|.....+..|+.++.. ..+..+++.++..+..-+
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4566788888889999999999999999987 45677788888888888888864 135678888888877643
No 225
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=54.57 E-value=7.1 Score=34.48 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=21.9
Q ss_pred HHhhhccCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCc
Q 041252 58 IAELDLAEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQE 113 (450)
Q Consensus 58 ~~~~~~~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~ 113 (450)
++.++.++-...+.|++|+-++. . .-...||.|+.+
T Consensus 160 l~~l~~~~~~~~~~C~~CG~i~~-g-------------------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 160 YNDIDAPDDDKFHLCPICGYIHK-G-------------------EDFEKCPICFRP 195 (202)
T ss_dssp HHTTTCCCSCCEEECSSSCCEEE-S-------------------SCCSBCTTTCCB
T ss_pred HHHHhcCCCCcEEEECCCCCEEc-C-------------------cCCCCCCCCCCC
Confidence 44444454455788888776543 1 113689999875
No 226
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=53.48 E-value=62 Score=28.59 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=54.7
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHc-HHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcC
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAH-ASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLT 220 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls 220 (450)
..+..|.+.|.+.++.++..||..|..+.++. ......|.+...+..|+.+++...+..+++.++..+..-+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 45667788888889999999999999998874 4466677777777778887765446678888887776533
No 227
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=52.99 E-value=4 Score=26.85 Aligned_cols=13 Identities=23% Similarity=0.751 Sum_probs=11.5
Q ss_pred CCCCeeeCcCCCC
Q 041252 65 EIPSVFVCPISLE 77 (450)
Q Consensus 65 ~~p~~~~Cpi~~~ 77 (450)
++|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 6899999999985
No 228
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=51.51 E-value=1 Score=33.56 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=23.3
Q ss_pred eeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 70 FVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
..||.|+..|.- ..++.+|..|=..+ .. ...||.|++++.
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~-~~-~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDF-SL-QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEE-EE-EEECSSSCSCCC
T ss_pred CCCCCCCCcccc----CCCceECccccccC-CC-cccCcchhhHHH
Confidence 579999987752 23344465551111 11 237999988874
No 229
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=50.48 E-value=5.8 Score=26.11 Aligned_cols=40 Identities=10% Similarity=0.024 Sum_probs=22.5
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
.|.|++|...|.....+ +.-+...-....+.||.|+..+.
T Consensus 4 ~~~C~~C~~~f~~~~~l-------~~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYL-------NIHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp -CBCTTTCCBCSCHHHH-------HHHHHHHHCCCCEECSSSSCEES
T ss_pred CccCCCCcchhCChHHH-------HHHHHHcCCCCCcCCCCCcchhC
Confidence 37899988877765422 11122222222456999987654
No 230
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=50.22 E-value=1.4e+02 Score=26.77 Aligned_cols=143 Identities=10% Similarity=0.020 Sum_probs=82.5
Q ss_pred HHHHHHHhh-ccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCC--Cchhhh
Q 041252 151 ASELLGTLK-KVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTL--DSESKT 227 (450)
Q Consensus 151 i~~Lv~~L~-~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~--~~~~k~ 227 (450)
+..+...|. +...++|.-|+..|..+ ... ...++.+...+....+=.|++-+..++..++. +++
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 334555554 44567888888866555 211 11244444433322234688888777776543 222
Q ss_pred hccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-C
Q 041252 228 NLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-L 306 (450)
Q Consensus 228 ~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~ 306 (450)
..++.+...+.+++..+|..|...++--+..... -.....+-+++.-+....+.-++++.+++|..++. +
T Consensus 139 -----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~----k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 139 -----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF----KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp -----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT----TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh----hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 2577888889999999999988776543322111 11122233333333333356788999999999995 5
Q ss_pred hHHHHHHHh
Q 041252 307 NEVRSLVVS 315 (450)
Q Consensus 307 ~~~~~~iv~ 315 (450)
++-...+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444443
No 231
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=50.01 E-value=1.4e+02 Score=33.51 Aligned_cols=220 Identities=13% Similarity=0.025 Sum_probs=113.1
Q ss_pred HHHHHHHhhcc--chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhC-CCCChhhHHHHHHHHHhcC------C
Q 041252 151 ASELLGTLKKV--KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLG-PFTSHAVGSEAVGVLVNLT------L 221 (450)
Q Consensus 151 i~~Lv~~L~~~--~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~-~~~~~~v~~~Al~~L~~Ls------~ 221 (450)
+..++..+-++ +.+.|.+|-+.|..+-.. ++ +...+...|. ...+..++.-|+.+|.+.. .
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 33444443343 345677788888776432 21 2333333333 3336678888888888743 2
Q ss_pred CchhhhhccCCCchHHHHHHhcC---CCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCccchhHHHH
Q 041252 222 DSESKTNLMQPAKVSLLVDMLNE---GSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPNGILPGLS 298 (450)
Q Consensus 222 ~~~~k~~i~~~g~i~~Lv~lL~~---~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~~~~~al~ 298 (450)
+++.|..|. ...+..+...-.. .+..++...+.++..++..+-. ... ..+++.|+.++.. ++.....++.
T Consensus 83 ~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~W---p~ll~~L~~~~~~--~~~~~e~~L~ 155 (1204)
T 3a6p_A 83 SRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHW---PDMLIELDTLSKQ--GETQTELVMF 155 (1204)
T ss_dssp CHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTC---TTHHHHHHHHHHT--CHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccc---hHHHHHHHHHhcC--CHHHHHHHHH
Confidence 334444432 2223332222111 3577888888888888643211 011 3567888888765 3445677888
Q ss_pred HHHHhccC-------hHHHH-----HHHhc--CCHHHHHHhcCC-------------------CChhHHHHHHHHHHHhc
Q 041252 299 LLRSICLL-------NEVRS-----LVVSI--GAVPQLVELLPS-------------------LDPDCLQLALCILDALS 345 (450)
Q Consensus 299 aL~~Ls~~-------~~~~~-----~iv~~--G~v~~Lv~lL~~-------------------~~~~~~~~al~~L~~L~ 345 (450)
+|..|+.. ...|. .+.+. .+++.+..+|.+ .+..+...++.++.+..
T Consensus 156 iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l 235 (1204)
T 3a6p_A 156 ILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYI 235 (1204)
T ss_dssp HHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 88888621 11121 22221 122333333322 12235555566555444
Q ss_pred CChhhHHHHhccC-CChHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 041252 346 SLPEGKLALKDCA-NTIPNTVRLLMRVSEDCTQYALSILWSICKIA 390 (450)
Q Consensus 346 ~~~e~r~~i~~~~-g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 390 (450)
..-.. ..+.+.. ..++.+..++. ++..+..|+.+|..+....
T Consensus 236 ~Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 236 DWVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TTSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred hccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 32111 1222211 14555554433 5778889999999988755
No 232
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=49.86 E-value=10 Score=28.87 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=38.3
Q ss_pred CCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 65 EIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
..-.-+.|-.|=...+ =.+.+..|-+|+.|+..-+.. ...||.|+.+|+.
T Consensus 24 s~~G~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPt 73 (99)
T 2ko5_A 24 THLGPQFCKSCWFENK-GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPT 73 (99)
T ss_dssp CCSCCCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCC
T ss_pred cccCcccChhhccccC-CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCc
Confidence 3334578888866555 345677899999999998886 6789999998864
No 233
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=49.10 E-value=3e+02 Score=30.14 Aligned_cols=209 Identities=11% Similarity=0.032 Sum_probs=115.2
Q ss_pred chHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCC--ChhhHHHHHHHHHhcCC--Cch----hhhhccCCC
Q 041252 162 KGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFT--SHAVGSEAVGVLVNLTL--DSE----SKTNLMQPA 233 (450)
Q Consensus 162 ~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~--~~~v~~~Al~~L~~Ls~--~~~----~k~~i~~~g 233 (450)
+.+.|.+|-+.|..+- .+++ +......+|.... +..++.-|+.+|.+.-. .++ .+..+ ...
T Consensus 21 d~~~r~~A~~~L~~~q-~sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~l-r~~ 89 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLR-SSST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMI-RDS 89 (980)
T ss_dssp CHHHHHHHHHHHHHHH-HSTT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHH-cChh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHH-HHH
Confidence 4667888888887764 3333 3445556675532 56788888888876322 223 23222 122
Q ss_pred chHHHHHHhc-CCCHHHHHHHHHHHHHHhccC-CChhhHhhhhhHHHHHHHHHhcCCCc-cchhHHHHHHHHhcc---C-
Q 041252 234 KVSLLVDMLN-EGSVETKINCTRLIEKLMEEK-DFRPEIVSSHRLLIGLMRLVKNKRHP-NGILPGLSLLRSICL---L- 306 (450)
Q Consensus 234 ~i~~Lv~lL~-~~~~~~~~~aa~~L~~La~~~-~~~~~~~~~~g~l~~Lv~lL~~~~~~-~~~~~al~aL~~Ls~---~- 306 (450)
.+..+...-. .+..-++...+.+|..++... ... =.+.++.|+.++..+ +. ......+++|..|+. +
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~-----Wp~~i~~l~~~~~~~-~~~~~~~~~LriL~~i~EEv~~~ 163 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN-----WNDFFASLQGVIAAS-SQSEFSNFYLKVLLSIGDEIADS 163 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc-----CchHHHHHHHHhcCC-ChhHHHHHHHHHHHHhHHHHHhc
Confidence 2333332100 235667888888888775322 111 124567777777653 22 233445555553331 1
Q ss_pred -----hH--H-----HHHHHhc---CCHHHHHHhc----CCCChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHH
Q 041252 307 -----NE--V-----RSLVVSI---GAVPQLVELL----PSLDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRL 367 (450)
Q Consensus 307 -----~~--~-----~~~iv~~---G~v~~Lv~lL----~~~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~l 367 (450)
.+ . +..+.+. -+++....+| .+.++.+...++.+|..-...-. -..+.. ...++.+.+.
T Consensus 164 ~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~-~~ll~~l~~~ 241 (980)
T 3ibv_A 164 LVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVN-EPCMNLLYSF 241 (980)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHC-HHHHHHHHHH
T ss_pred ccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhc-chHHHHHHHH
Confidence 00 1 2223221 0133344444 23577888888988888876422 233344 4667777777
Q ss_pred HhcCChHHHHHHHHHHHHhcccCc
Q 041252 368 LMRVSEDCTQYALSILWSICKIAP 391 (450)
Q Consensus 368 L~~~s~~~~e~A~~~L~~L~~~~~ 391 (450)
|. ++..++.|+.+|..+.....
T Consensus 242 L~--~~~~r~~A~ecL~ei~~k~~ 263 (980)
T 3ibv_A 242 LQ--IEELRCAACETMTEIVNKKM 263 (980)
T ss_dssp TT--SHHHHHHHHHHHHHHHHSCC
T ss_pred cC--ChHHHHHHHHHHHHHHHcCC
Confidence 65 37889999999998876553
No 234
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=48.86 E-value=25 Score=34.70 Aligned_cols=138 Identities=7% Similarity=0.159 Sum_probs=82.0
Q ss_pred hhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHH-HHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhH
Q 041252 198 SLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLV-DMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRL 276 (450)
Q Consensus 198 ~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv-~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~ 276 (450)
.++.+.. .+-.++.+|+.+..+...- +.+..++ ..+.+.++..+..+.+++.||-........++.....
T Consensus 235 kil~~WP---~~FPaLDLLRl~v~~p~~~------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~ 305 (425)
T 3pst_A 235 TIRSNWE---IKTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQV 305 (425)
T ss_dssp HHHHHCS---CCHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHH
T ss_pred HHHHhCC---cccHHHHHHHHHHcCCchH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchh
Confidence 5554442 2555777887766554322 2233333 2333557888899999999997666545555554444
Q ss_pred HHHHHHHHhcC-------CCccchhHHHHHHHHhccChHH-HHHHHhcCCHHHHHHhcC---------CCChhHHHHHHH
Q 041252 277 LIGLMRLVKNK-------RHPNGILPGLSLLRSICLLNEV-RSLVVSIGAVPQLVELLP---------SLDPDCLQLALC 339 (450)
Q Consensus 277 l~~Lv~lL~~~-------~~~~~~~~al~aL~~Ls~~~~~-~~~iv~~G~v~~Lv~lL~---------~~~~~~~~~al~ 339 (450)
...+++.+... .+.+++.+++..+.|++..... +. +...+..+++++. ..+.+..-.++-
T Consensus 306 ~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLV 382 (425)
T 3pst_A 306 YKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTV 382 (425)
T ss_dssp HHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHH
Confidence 56666655321 1345677888899999853211 11 1223344555553 247788888999
Q ss_pred HHHHhcCC
Q 041252 340 ILDALSSL 347 (450)
Q Consensus 340 ~L~~L~~~ 347 (450)
+|.+|...
T Consensus 383 ALGtLv~~ 390 (425)
T 3pst_A 383 AYGNLATV 390 (425)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988853
No 235
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=48.60 E-value=5.1 Score=27.33 Aligned_cols=13 Identities=38% Similarity=0.887 Sum_probs=11.8
Q ss_pred CCCCeeeCcCCCC
Q 041252 65 EIPSVFVCPISLE 77 (450)
Q Consensus 65 ~~p~~~~Cpi~~~ 77 (450)
++|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 32 DIPDDWVCPLCGV 44 (54)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCcCCCC
Confidence 7899999999985
No 236
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=47.77 E-value=6.1 Score=26.69 Aligned_cols=13 Identities=23% Similarity=0.828 Sum_probs=11.6
Q ss_pred CCCCeeeCcCCCC
Q 041252 65 EIPSVFVCPISLE 77 (450)
Q Consensus 65 ~~p~~~~Cpi~~~ 77 (450)
++|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 32 DLPDDWACPVCGA 44 (52)
T ss_dssp SSCTTCCCSSSCC
T ss_pred HCCCCCcCCCCCC
Confidence 6899999999985
No 237
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=47.54 E-value=29 Score=28.55 Aligned_cols=75 Identities=13% Similarity=0.013 Sum_probs=53.1
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhc-ChHHHHHHHHHc-----CCC--HHHHHHHHHHHHHHHh
Q 041252 361 IPNTVRLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDA-GLAAKLFLVIQS-----GCN--PVLKQRSAELLKLCSL 432 (450)
Q Consensus 361 i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~-G~i~~L~~ll~s-----~~~--~~~k~~A~~lL~~ls~ 432 (450)
++.|.+-|...++.++-+|+.+|-.|+.+.++..+..+.+. ..|..+..+-.. |.+ ..+|++|.+++.++..
T Consensus 51 m~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 51 SEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 44777888888899999999999999998887776666543 333333332211 112 4689999999999877
Q ss_pred hcC
Q 041252 433 NYT 435 (450)
Q Consensus 433 ~~~ 435 (450)
...
T Consensus 131 ~~~ 133 (140)
T 1vdy_A 131 EEN 133 (140)
T ss_dssp CSS
T ss_pred cCC
Confidence 644
No 238
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=45.54 E-value=24 Score=28.97 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=47.5
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhcCC--hhhHHHHhccCCChHHHHHHHhcCChHHHHHHHHHHHHhc
Q 041252 320 PQLVELLPSLDPDCLQLALCILDALSSL--PEGKLALKDCANTIPNTVRLLMRVSEDCTQYALSILWSIC 387 (450)
Q Consensus 320 ~~Lv~lL~~~~~~~~~~al~~L~~L~~~--~e~r~~i~~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 387 (450)
..|..-|...++.++..|+.+|..+..+ +.-...+.. ...+..|++++....+.+++..+..+..-+
T Consensus 45 rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas-~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 45 RSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCS-RDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSS-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3455556667788888899999888765 333445544 356777888887778889998888876544
No 239
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=45.44 E-value=4.9 Score=34.95 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=38.8
Q ss_pred CCeeeCcCCCCCCCC---CeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 67 PSVFVCPISLEPMQD---PVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d---Pv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
|+.|.|..|+..+.+ +.....|.-||+.+..+-+.. ...|+.|++++..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCcccc
Confidence 567999999999885 777889999999998776542 2269999887754
No 240
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=44.58 E-value=3.5e+02 Score=30.38 Aligned_cols=180 Identities=12% Similarity=0.050 Sum_probs=98.9
Q ss_pred ccchHHHHHHHHHHHHHHHH-----cHHHHHHHHhhCChHHHHhhhCCC--CChhhHHHHHHHHHhcCCCchhhhhccCC
Q 041252 160 KVKGQARVQALKELHQIAAA-----HASARKTMVDEGGVALISSLLGPF--TSHAVGSEAVGVLVNLTLDSESKTNLMQP 232 (450)
Q Consensus 160 ~~~~~~~~~Al~~L~~l~~~-----~~~~r~~i~~~G~i~~Lv~lL~~~--~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~ 232 (450)
+.+..+|.-|+..|++.... +++.|..|.+ ..+..+...-... ....++.....++..+...+-.. -=+
T Consensus 58 s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp 133 (1204)
T 3a6p_A 58 TQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWP 133 (1204)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCT
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cch
Confidence 34567888999999988765 2344444432 2333333321110 23556666677777665432110 016
Q ss_pred CchHHHHHHhcCCCHHHHHHHHHHHHHHhcc---CCC----hhh----Hhhh--hhHHHHHHHHHhcC------------
Q 041252 233 AKVSLLVDMLNEGSVETKINCTRLIEKLMEE---KDF----RPE----IVSS--HRLLIGLMRLVKNK------------ 287 (450)
Q Consensus 233 g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~---~~~----~~~----~~~~--~g~l~~Lv~lL~~~------------ 287 (450)
..++.|+.++++ +...++.+..+|..|+++ .+. +.. .+.+ ..++..+..++.+.
T Consensus 134 ~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~ 212 (1204)
T 3a6p_A 134 DMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTS 212 (1204)
T ss_dssp THHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCST
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 788999998876 556678888888888643 111 000 0110 12334444444321
Q ss_pred ------CCccchhHHHHHHHHhccChHHHHHHHhcC--CHHHHHHhcCCCChhHHHHHHHHHHHhcCC
Q 041252 288 ------RHPNGILPGLSLLRSICLLNEVRSLVVSIG--AVPQLVELLPSLDPDCLQLALCILDALSSL 347 (450)
Q Consensus 288 ------~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G--~v~~Lv~lL~~~~~~~~~~al~~L~~L~~~ 347 (450)
.+..+...++.++.+...+-.. ..+++.. .++.+..++. +++++..|+.+|..+...
T Consensus 213 ~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 213 QESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSR 277 (1204)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTC
T ss_pred chhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhC
Confidence 0123445666666655544322 1233332 5666666664 567888999999988864
No 241
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=43.54 E-value=23 Score=34.17 Aligned_cols=137 Identities=7% Similarity=0.156 Sum_probs=79.3
Q ss_pred hhhCCCCChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHH-HhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhH
Q 041252 198 SLLGPFTSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD-MLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRL 276 (450)
Q Consensus 198 ~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~ 276 (450)
.++.... .+-.++.+|+.+..+...- +.+..++. .+.+.++..+..+.+++.|+-........++.+...
T Consensus 172 ~i~~~Wp---~~FP~LDLLRl~v~~~~~~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~ 242 (362)
T 3l3f_X 172 TIRSNWE---IKTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQV 242 (362)
T ss_dssp HHHHHCS---CCHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHH
T ss_pred HHHhhCC---ccchHHHHHHHHhcCCChH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchh
Confidence 4454442 1455777777665544322 22333332 333557888889999999997666544555544333
Q ss_pred HHHHHHHHhcC-------CCccchhHHHHHHHHhccChHH-HHHHHhcCCHHHHHHhcC---------CCChhHHHHHHH
Q 041252 277 LIGLMRLVKNK-------RHPNGILPGLSLLRSICLLNEV-RSLVVSIGAVPQLVELLP---------SLDPDCLQLALC 339 (450)
Q Consensus 277 l~~Lv~lL~~~-------~~~~~~~~al~aL~~Ls~~~~~-~~~iv~~G~v~~Lv~lL~---------~~~~~~~~~al~ 339 (450)
...+++.+... .+.+++.+++..+.|++..... +. +...+..+++++. ..+.+..-.++-
T Consensus 243 ~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLV 319 (362)
T 3l3f_X 243 YKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTV 319 (362)
T ss_dssp HTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHH
Confidence 44555554221 1345677888899999853211 11 1223344555554 247788888999
Q ss_pred HHHHhcC
Q 041252 340 ILDALSS 346 (450)
Q Consensus 340 ~L~~L~~ 346 (450)
+|.+|..
T Consensus 320 ALGtL~~ 326 (362)
T 3l3f_X 320 AYGNLAT 326 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998885
No 242
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=43.24 E-value=6.9 Score=26.42 Aligned_cols=13 Identities=31% Similarity=0.904 Sum_probs=11.6
Q ss_pred CCCCeeeCcCCCC
Q 041252 65 EIPSVFVCPISLE 77 (450)
Q Consensus 65 ~~p~~~~Cpi~~~ 77 (450)
.+|+++.||+|+.
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 6899999999985
No 243
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=41.84 E-value=99 Score=25.55 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=55.3
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHc-HHHHHHHHhhCChHHHHhhhCC-----CCChhhHHHHHHHHHhcC
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAH-ASARKTMVDEGGVALISSLLGP-----FTSHAVGSEAVGVLVNLT 220 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~-----~~~~~v~~~Al~~L~~Ls 220 (450)
..+..|...|.+.++.++..|+..|..++++. ......|.....+.-|+.++.. ..+..+++..+.++..-+
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 45667788888889999999999999998864 4456677777778888888864 235678888888887643
No 244
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=41.81 E-value=7.2 Score=26.66 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=11.6
Q ss_pred CCCCeeeCcCCCC
Q 041252 65 EIPSVFVCPISLE 77 (450)
Q Consensus 65 ~~p~~~~Cpi~~~ 77 (450)
++|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cga 44 (55)
T 2v3b_B 32 DIPADWVCPDCGV 44 (55)
T ss_dssp GSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999985
No 245
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=41.35 E-value=8.3 Score=28.63 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=11.8
Q ss_pred CCCCeeeCcCCCC
Q 041252 65 EIPSVFVCPISLE 77 (450)
Q Consensus 65 ~~p~~~~Cpi~~~ 77 (450)
++|+++.||+|+.
T Consensus 56 dlPddW~CPvCga 68 (81)
T 2kn9_A 56 DIPDDWSCPDCGA 68 (81)
T ss_dssp TSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 6899999999986
No 246
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=41.07 E-value=6.5 Score=25.86 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=20.9
Q ss_pred eeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc----CCCCCCCcCCcCC
Q 041252 70 FVCPISLEPMQDPVTLCTGQTYERSNILKWFSL----GRYTCPTTMQELW 115 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~----~~~~cP~~~~~l~ 115 (450)
|.|++|...|..+. .+...... ..+.|+.|+..+.
T Consensus 2 ~~C~~C~~~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXKKPS-----------MLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCSSHH-----------HHHHHHHHTSSCCCEECSSSSCEES
T ss_pred CcCCCCcCcCCCHH-----------HHHHHHHhcCCCCCccCCCCCchhc
Confidence 67888887766543 23333322 2346999987654
No 247
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=40.91 E-value=14 Score=28.50 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=24.4
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcC
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLG 103 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~ 103 (450)
+++||+|++.+..+.+. -...-|..|++|...+
T Consensus 63 ~~~cP~~~~~l~~~~L~--pn~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 63 SPTDPFNRQTLTESMLE--PVPELKEQIQAWMREK 95 (100)
T ss_dssp CSBCSSSCCBCCTTSSE--ECHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCChhhce--ECHHHHHHHHHHHHHh
Confidence 57899999988865332 2344699999999864
No 248
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.80 E-value=21 Score=24.96 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=26.3
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccHHHHHHHH
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYERSNILKWF 100 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r~~I~~~~ 100 (450)
|+-|.|..|+..+.+ +.....|.-||+.+..+.+
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 29 KECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 456899999988865 5566789999998876654
No 249
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=40.71 E-value=11 Score=28.87 Aligned_cols=13 Identities=15% Similarity=0.580 Sum_probs=11.3
Q ss_pred cccHHHHHHHHhc
Q 041252 90 TYERSNILKWFSL 102 (450)
Q Consensus 90 ty~r~~I~~~~~~ 102 (450)
-|||.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3899999999974
No 250
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=40.70 E-value=4.2e+02 Score=29.41 Aligned_cols=207 Identities=13% Similarity=0.091 Sum_probs=117.2
Q ss_pred HHHHHHHHHHhcccccccCCcchhhcHHHHHHHhhc-cchHHHHHHHHHHHHHHHHc-----HHHHHHHHhhCChHHHHh
Q 041252 125 LYHLIHTWFSQKYLLMKKRSEDVQGRASELLGTLKK-VKGQARVQALKELHQIAAAH-----ASARKTMVDEGGVALISS 198 (450)
Q Consensus 125 L~~~I~~w~~~~~~~~~~~~~~~~~~i~~Lv~~L~~-~~~~~~~~Al~~L~~l~~~~-----~~~r~~i~~~G~i~~Lv~ 198 (450)
-++..++|..+-. .... ....+...|.. .+..+|.-|+..|++....+ ++.|..+. ...+..+..
T Consensus 44 ~r~qA~~~L~q~q----~sp~----aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR-~~Ll~~l~~ 114 (1073)
T 3gjx_A 44 QQRMAQEVLTHLK----EHPD----AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIK-KYVVGLIIK 114 (1073)
T ss_dssp HHHHHHHHHHTSS----CCSC----HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCch----HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHH-HHHHHHHHH
Confidence 4667777776521 1111 12223333433 46778999999999887642 33344333 223444444
Q ss_pred hhCCC----CChhhHHHHHHHHHhcCCCchhhhhccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhcc-CCCh------
Q 041252 199 LLGPF----TSHAVGSEAVGVLVNLTLDSESKTNLMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEE-KDFR------ 267 (450)
Q Consensus 199 lL~~~----~~~~v~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~-~~~~------ 267 (450)
.-... .+..+......++..+...+-.. .=+..++-++..+.. ++...+....+|..|.+. .+..
T Consensus 115 ~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~ 190 (1073)
T 3gjx_A 115 TSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQ 190 (1073)
T ss_dssp HHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCH
T ss_pred HccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccH
Confidence 32221 12345555555555554322100 015678888887753 455667778888888643 1111
Q ss_pred ------hhHhhh--hhHHHHHHHHHhcCCCccchhHHHHHHHHhccChHHHHHHHhcCCHHHH-HHhcCCCChhHHHHHH
Q 041252 268 ------PEIVSS--HRLLIGLMRLVKNKRHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQL-VELLPSLDPDCLQLAL 338 (450)
Q Consensus 268 ------~~~~~~--~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~L-v~lL~~~~~~~~~~al 338 (450)
+..+.+ ..++..+..+|....++.....++.+|.....+-+. ..+++.+.++.| ..+|. +++.+..|+
T Consensus 191 ~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~ll~~L~~~~L~--~~~~r~aA~ 267 (1073)
T 3gjx_A 191 VKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFETKLISTLIYKFLN--VPMFRNVSL 267 (1073)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHHHTSS--SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccchHHHHHHHHhcC--ChHHHHHHH
Confidence 111111 123444445555554666778888999988876543 357778888887 47764 678999999
Q ss_pred HHHHHhcCC
Q 041252 339 CILDALSSL 347 (450)
Q Consensus 339 ~~L~~L~~~ 347 (450)
.+|..+...
T Consensus 268 dcL~eIv~k 276 (1073)
T 3gjx_A 268 KCLTEIAGV 276 (1073)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999988753
No 251
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=40.54 E-value=11 Score=28.79 Aligned_cols=13 Identities=23% Similarity=0.583 Sum_probs=11.3
Q ss_pred cccHHHHHHHHhc
Q 041252 90 TYERSNILKWFSL 102 (450)
Q Consensus 90 ty~r~~I~~~~~~ 102 (450)
-|||.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3899999999974
No 252
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.23 E-value=18 Score=25.35 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=27.9
Q ss_pred CCCeeeCcCCCCCCCCC-eeCCCCCcccHHHHHHHHhc
Q 041252 66 IPSVFVCPISLEPMQDP-VTLCTGQTYERSNILKWFSL 102 (450)
Q Consensus 66 ~p~~~~Cpi~~~~m~dP-v~~~~g~ty~r~~I~~~~~~ 102 (450)
=|+-|.|..|...+.+- .....|.-||+.+..+-+..
T Consensus 28 H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 28 HPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp CTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCC
T ss_pred cccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCC
Confidence 35678999999888763 44568889999988777653
No 253
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.81 E-value=21 Score=26.48 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=25.3
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccHHHHHHHHh
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYERSNILKWFS 101 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r~~I~~~~~ 101 (450)
|+-|.|..|...+.+ ......|.-||+.+..+.+.
T Consensus 49 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~ 84 (90)
T 2dar_A 49 PEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFA 84 (90)
T ss_dssp TTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTS
T ss_pred ccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcC
Confidence 556888888887774 45556788888888766543
No 254
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=39.33 E-value=24 Score=32.14 Aligned_cols=129 Identities=8% Similarity=0.144 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCCCchhhhhccCCCchHHHHH-HhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcC
Q 041252 209 GSEAVGVLVNLTLDSESKTNLMQPAKVSLLVD-MLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNK 287 (450)
Q Consensus 209 ~~~Al~~L~~Ls~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~ 287 (450)
+-.++.+++-+..++..- +.+..++. .+.+.++..+..+.+++.|+-........++.+......+++.+.+.
T Consensus 71 ~fP~lDllRl~~~~~~~~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~ 144 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 144 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHHcCCchH------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHH
Confidence 444666776655544322 22333332 23345778899999999999766653344454444455555554221
Q ss_pred -------CCccchhHHHHHHHHhccChH-HHHHHHhcCCHHHHHHhcCC---------CChhHHHHHHHHHHHhcC
Q 041252 288 -------RHPNGILPGLSLLRSICLLNE-VRSLVVSIGAVPQLVELLPS---------LDPDCLQLALCILDALSS 346 (450)
Q Consensus 288 -------~~~~~~~~al~aL~~Ls~~~~-~~~~iv~~G~v~~Lv~lL~~---------~~~~~~~~al~~L~~L~~ 346 (450)
.+.+++.+++.++.|++.... .+. +......+++++.. .+.+....++-+|.+|..
T Consensus 145 ~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 145 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 134567788889999984211 111 12223344444431 266777888888888874
No 255
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=38.70 E-value=8.8 Score=27.66 Aligned_cols=14 Identities=29% Similarity=0.904 Sum_probs=12.1
Q ss_pred CCCCeeeCcCCCCC
Q 041252 65 EIPSVFVCPISLEP 78 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~ 78 (450)
++|+++.||+|+.-
T Consensus 36 ~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 36 DLSDSFMCPACRSP 49 (70)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCCCCCCC
Confidence 68999999999863
No 256
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=38.45 E-value=1.9e+02 Score=27.11 Aligned_cols=146 Identities=13% Similarity=0.073 Sum_probs=79.8
Q ss_pred hHHHHHHhcCC------CHHHHHHHHHHHHHHhccCCChhhHhh-hhhHHHHHHHHHhcCCCccchhHHHHHHHHhcc-C
Q 041252 235 VSLLVDMLNEG------SVETKINCTRLIEKLMEEKDFRPEIVS-SHRLLIGLMRLVKNKRHPNGILPGLSLLRSICL-L 306 (450)
Q Consensus 235 i~~Lv~lL~~~------~~~~~~~aa~~L~~La~~~~~~~~~~~-~~g~l~~Lv~lL~~~~~~~~~~~al~aL~~Ls~-~ 306 (450)
...+..+++++ +.+.-+.|...|..+|.+-+.-..++. .-..+..|+ +... ..+.+.+.++++|..--. +
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~-~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNEN-LPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTT-SCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhcc-CChhHHHHHHHHHHHHHccC
Confidence 33444555555 333445555666666544333333333 223333333 2122 233456666666655443 3
Q ss_pred hHHHHHHHh--cCCHHHHHHhc----CC---CChhHHHHHHHHHHHhcCChhhHHHHhccCCChHHHHHHHhcC--ChHH
Q 041252 307 NEVRSLVVS--IGAVPQLVELL----PS---LDPDCLQLALCILDALSSLPEGKLALKDCANTIPNTVRLLMRV--SEDC 375 (450)
Q Consensus 307 ~~~~~~iv~--~G~v~~Lv~lL----~~---~~~~~~~~al~~L~~L~~~~e~r~~i~~~~g~i~~Lv~lL~~~--s~~~ 375 (450)
+.....+.+ ...|..+..-| .. ....++..-+++|..|..++ ..+. ..++..|.+++... .+.+
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~---~~F~--~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS---EDLP--IYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS---TTC----CCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh---Hhhh--hccHHHHHHHHccCCCCHHH
Confidence 443333333 23333333333 22 24567888899999999886 2232 35788888888777 7888
Q ss_pred HHHHHHHHHHhc
Q 041252 376 TQYALSILWSIC 387 (450)
Q Consensus 376 ~e~A~~~L~~L~ 387 (450)
+..++.++..+-
T Consensus 177 k~Kvl~li~d~f 188 (315)
T 3qml_C 177 QIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 888888887665
No 257
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.99 E-value=14 Score=26.33 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=27.4
Q ss_pred CCeeeCcCCCCCCC--CCeeCCCCCcccHHHHHHHHhc
Q 041252 67 PSVFVCPISLEPMQ--DPVTLCTGQTYERSNILKWFSL 102 (450)
Q Consensus 67 p~~~~Cpi~~~~m~--dPv~~~~g~ty~r~~I~~~~~~ 102 (450)
|+-|.|..|+..+. +......|..||+.|..+.+..
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 56799999998886 4666678888998887765543
No 258
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=37.69 E-value=9.6 Score=26.24 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=22.4
Q ss_pred eeCcCCCCCCCCCeeCCCCCcccHHHHHHHHh----cCCCCCCCcCCcCCC
Q 041252 70 FVCPISLEPMQDPVTLCTGQTYERSNILKWFS----LGRYTCPTTMQELWD 116 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~----~~~~~cP~~~~~l~~ 116 (450)
|.|++|+..|..+.. +..... ...+.|+.|+..+..
T Consensus 5 y~C~~C~k~F~~~~~-----------L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 5 FFCNFCGKTYRDASG-----------LSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp EECTTTCCEESSHHH-----------HHHHHHHHHTCCCEECTTTCCEESS
T ss_pred ccCCCCCCEeCCHHH-----------HHHHHHHhCCCcCeECCCCCCCcCC
Confidence 788888876665532 333322 224579999887643
No 259
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.48 E-value=35 Score=23.83 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=28.7
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccHHHHHHHHhc
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYERSNILKWFSL 102 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r~~I~~~~~~ 102 (450)
++-|.|..|+..+.+ +.....|.-||+.+..+.+..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 31 VGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred ccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 456899999988865 466778999999998888765
No 260
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=37.23 E-value=28 Score=29.80 Aligned_cols=48 Identities=13% Similarity=0.235 Sum_probs=36.1
Q ss_pred CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCC
Q 041252 67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDD 117 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 117 (450)
|+.|.|..|...+.+......|.-||+.+..+-+ ...|..|++++...
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPPT 132 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCSS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCCC
Confidence 5679999999988865445689999998865532 45788888776543
No 261
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=36.48 E-value=37 Score=28.54 Aligned_cols=47 Identities=13% Similarity=0.240 Sum_probs=36.2
Q ss_pred CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
++-|.|..|...+.+-.....|.-||+.+..+-+ ...|..|++++..
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPP 77 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH---SCBCTTTCCBCCT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc---cccccccccccCC
Confidence 5679999999988875556799999999977654 3568888776654
No 262
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.27 E-value=28 Score=24.21 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=27.6
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccHHHHHHHHh
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYERSNILKWFS 101 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r~~I~~~~~ 101 (450)
++-|.|..|+..+.+ ......|..||+.+..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 29 ADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred cCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 467999999988864 55667899999999877654
No 263
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=36.02 E-value=18 Score=24.95 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=22.7
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccHHHHHHH
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYERSNILKW 99 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r~~I~~~ 99 (450)
++-|.|..|...+.+ +.....|.-||+.+..+-
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 29 VEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQL 62 (66)
T ss_dssp TTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred cCcCEECCCCCCCCCCceEeECCcEECHHHHHHH
Confidence 456788888877664 455567788888776554
No 264
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=35.54 E-value=14 Score=32.22 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=7.8
Q ss_pred CCCCCCcCCc
Q 041252 104 RYTCPTTMQE 113 (450)
Q Consensus 104 ~~~cP~~~~~ 113 (450)
...||.|+.+
T Consensus 171 p~~CP~C~~~ 180 (191)
T 1lko_A 171 PELCPACAHP 180 (191)
T ss_dssp CSBCTTTCCB
T ss_pred CCCCCCCcCC
Confidence 3489999875
No 265
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=35.25 E-value=38 Score=24.05 Aligned_cols=45 Identities=9% Similarity=-0.012 Sum_probs=33.6
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccH-HHHHHHHhcCCCCCCCcCCcC
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYER-SNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r-~~I~~~~~~~~~~cP~~~~~l 114 (450)
++-|.|..|+..+.+ +.....|.-||+ .+..+-+ ...|..|+..+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f---~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF---GPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS---SCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHh---CccCCCcCCce
Confidence 467999999999886 677789999998 5876543 34577776543
No 266
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.90 E-value=21 Score=26.90 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=22.6
Q ss_pred eeeCcCCCCCC-CCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 69 VFVCPISLEPM-QDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 69 ~~~Cpi~~~~m-~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
.|.|++|...| ...-.+ +.-+... ....+.|+.|+..+.
T Consensus 34 ~~~C~~C~k~F~~~~~~L-------~~H~~~h-~~k~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 34 SVSCPTCQAVGRKTIEGL-------KKHMENC-KQEMFTCHHCGKQLR 73 (96)
T ss_dssp CEECTTTCSCEESSHHHH-------HHHHHHH-CCCCCCCSSSCCCCS
T ss_pred CcCCCCCCCCcccCHHHH-------HHHHHHH-CCCCeECCCCCCeeC
Confidence 38999888766 443221 1122223 333567999987764
No 267
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.50 E-value=33 Score=24.71 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=28.0
Q ss_pred CCeeeCcCCCCCCC--CCeeC-CCCCcccHHHHHHHHhc
Q 041252 67 PSVFVCPISLEPMQ--DPVTL-CTGQTYERSNILKWFSL 102 (450)
Q Consensus 67 p~~~~Cpi~~~~m~--dPv~~-~~g~ty~r~~I~~~~~~ 102 (450)
++-|.|..|...+. ++..+ ..|.-||+.+..+.+..
T Consensus 39 ~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~ 77 (81)
T 1x6a_A 39 PECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSG 77 (81)
T ss_dssp TTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCT
T ss_pred cccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcC
Confidence 56799999999885 56663 78899999998776653
No 268
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.38 E-value=7.4 Score=27.24 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=21.7
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHh----cCCCCCCCcCCcCC
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFS----LGRYTCPTTMQELW 115 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~----~~~~~cP~~~~~l~ 115 (450)
.|.|++|...|.... .+..... ...+.|+.|+..+.
T Consensus 14 ~~~C~~C~k~f~~~~-----------~L~~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 14 PYGCVECGKAFSRSS-----------ILVQHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CEECSSSCCEESSHH-----------HHHHHHHGGGCSCCEECSSSCCEES
T ss_pred CccCCCCCCccCCHH-----------HHHHHHHhcCCCCCeECCCCCcccC
Confidence 488999887665443 2333332 22456999987654
No 269
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=34.32 E-value=22 Score=28.38 Aligned_cols=29 Identities=10% Similarity=0.201 Sum_probs=14.2
Q ss_pred eeeCcCCCCCCC---CCeeCCCCCcccHHHHH
Q 041252 69 VFVCPISLEPMQ---DPVTLCTGQTYERSNIL 97 (450)
Q Consensus 69 ~~~Cpi~~~~m~---dPv~~~~g~ty~r~~I~ 97 (450)
-|.|..|+..|. .......|.-||+.|..
T Consensus 88 CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~ 119 (123)
T 2l4z_A 88 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 119 (123)
T ss_dssp TSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHH
T ss_pred ccCcCcCCCcccccCCceEEECCEEeCHHHhh
Confidence 355555555553 23444455555555543
No 270
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=34.10 E-value=12 Score=28.23 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=11.8
Q ss_pred CCCCeeeCcCCCC
Q 041252 65 EIPSVFVCPISLE 77 (450)
Q Consensus 65 ~~p~~~~Cpi~~~ 77 (450)
++|+++.||+|+.
T Consensus 64 dlPddW~CPvCga 76 (87)
T 1s24_A 64 DIPDDWCCPDCGA 76 (87)
T ss_dssp GCCTTCCCSSSCC
T ss_pred HCCCCCCCCCCCC
Confidence 7899999999985
No 271
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.54 E-value=19 Score=26.30 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=25.7
Q ss_pred CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHH
Q 041252 67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILKWF 100 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~ 100 (450)
|+-|.|..|...+.+-.....|.-||+.+..+-+
T Consensus 40 ~~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~~f 73 (80)
T 2dj7_A 40 VSCFKCQTCSVILTGEYISKDGVPYCESDYHAQF 73 (80)
T ss_dssp TTTCBCSSSCCBCSSCCEEETTEEECTTHHHHHT
T ss_pred cccCCcCcCCCCcCCCeEEECCEEECHHHHHHHc
Confidence 5668888888888765566688888888876544
No 272
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.31 E-value=14 Score=27.68 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=24.1
Q ss_pred CeeeCcCCCCCCC-CCeeCCCCCcccHHHHHHHHh-cCCCCCCCcCCcCC
Q 041252 68 SVFVCPISLEPMQ-DPVTLCTGQTYERSNILKWFS-LGRYTCPTTMQELW 115 (450)
Q Consensus 68 ~~~~Cpi~~~~m~-dPv~~~~g~ty~r~~I~~~~~-~~~~~cP~~~~~l~ 115 (450)
..|.|++|...|. ....+ +.-+...-. ...+.|+.|+..|.
T Consensus 23 ~~~~C~~C~k~f~~~~~~L-------~~H~~~h~~~~~~~~C~~C~k~F~ 65 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGL-------KKHMEVCQKLQDALKCQHCRKQFK 65 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHH-------HHHHHHHHHHHHHHSCSSSCCCCS
T ss_pred CCcCCCCCCCChhhhHHHH-------HHHHHHHcCCCCCEECCCCCCccC
Confidence 3489999998887 55432 122222222 22467999987664
No 273
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.57 E-value=14 Score=22.83 Aligned_cols=12 Identities=17% Similarity=0.587 Sum_probs=8.2
Q ss_pred eeCcCCCCCCCC
Q 041252 70 FVCPISLEPMQD 81 (450)
Q Consensus 70 ~~Cpi~~~~m~d 81 (450)
|.|++|...|..
T Consensus 11 ~~C~~C~k~f~~ 22 (45)
T 2epq_A 11 YSCPVCGLRFKR 22 (45)
T ss_dssp SEETTTTEECSC
T ss_pred CcCCCCCcccCC
Confidence 778887765554
No 274
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.00 E-value=13 Score=24.31 Aligned_cols=36 Identities=8% Similarity=0.206 Sum_probs=22.3
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHh-c----CCCCCCCcCCcCC
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFS-L----GRYTCPTTMQELW 115 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~-~----~~~~cP~~~~~l~ 115 (450)
.|.|++|...|..+ ..+..+.. . ..+.|+.|+..+.
T Consensus 12 ~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 12 PYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp CEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 48899887765543 33444443 1 2457999987764
No 275
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.93 E-value=20 Score=25.97 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=23.3
Q ss_pred CCeeeCcCCCCCCCCCeeCCCCCcccHHHHHH
Q 041252 67 PSVFVCPISLEPMQDPVTLCTGQTYERSNILK 98 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~ 98 (450)
|+.|.|..|...+.+-.....|.-||+.+..+
T Consensus 39 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~cy~~ 70 (79)
T 2cor_A 39 PDHFNCANCGKELTADARELKGELYCLPCHDK 70 (79)
T ss_dssp TTTSBCSSSCCBCCTTCEEETTEEECHHHHHT
T ss_pred CCCCEeCCCCCccCCCCEeECCEEeCHHHHHH
Confidence 56688888888877654455788888887644
No 276
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=31.71 E-value=8.7 Score=25.56 Aligned_cols=35 Identities=14% Similarity=0.396 Sum_probs=20.6
Q ss_pred eeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc----CCCCCCCcCCcCC
Q 041252 70 FVCPISLEPMQDPVTLCTGQTYERSNILKWFSL----GRYTCPTTMQELW 115 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~----~~~~cP~~~~~l~ 115 (450)
|.|++|...|..+. .+...... ..+.||.|+..+.
T Consensus 3 ~~C~~C~~~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 3 FVCEVCTRAFARQE-----------HLKRHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp BCCTTTCCCBSCHH-----------HHHHHHHTTTSSCSEECTTTCCEES
T ss_pred CcCCCCccccCCHH-----------HHHHHHHHhCCCCCccCCCCCCccC
Confidence 77888877665442 33333332 1345999987654
No 277
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=31.68 E-value=13 Score=26.07 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=23.2
Q ss_pred CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHh----cCCCCCCCcCCcCCC
Q 041252 68 SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFS----LGRYTCPTTMQELWD 116 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~----~~~~~cP~~~~~l~~ 116 (450)
..|.|++|...|...- .+..... ...+.|+.|+..+..
T Consensus 16 ~~~~C~~C~k~f~~~~-----------~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 16 KPYKCDRCQASFRYKG-----------NLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CSBCCTTSSCCBSCHH-----------HHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCeECCCCCceeCCHH-----------HHHHHHHHcCCCCCEECCCCCchhCC
Confidence 3489999888776543 2333332 123569999876643
No 278
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=31.24 E-value=36 Score=25.67 Aligned_cols=46 Identities=11% Similarity=0.236 Sum_probs=35.0
Q ss_pred CCeeeCcCCCCCCCCC-eeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 67 PSVFVCPISLEPMQDP-VTLCTGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dP-v~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
++-|.|..|+..+.+. .....|..||+.+..+ .-...|..|++++.
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~---~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTR---EDSPKCKGCFKAIV 77 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTT---CCCCBCSSSCCBCC
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhh---hcCCccccCCCccc
Confidence 4679999999988764 5567899999888643 23467999988775
No 279
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.71 E-value=25 Score=26.01 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=20.7
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccHHHHHHHH
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYERSNILKWF 100 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r~~I~~~~ 100 (450)
++-|.|-.|+..|.+ ......|.-||+.+..+-+
T Consensus 49 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 83 (89)
T 1x64_A 49 PECFVCADCNLNLKQKGYFFVEGELYCETHARART 83 (89)
T ss_dssp TTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHS
T ss_pred ccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHh
Confidence 345677777766664 4444566777776665543
No 280
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=30.28 E-value=15 Score=25.91 Aligned_cols=10 Identities=10% Similarity=0.291 Sum_probs=5.2
Q ss_pred CCCCCcCCcC
Q 041252 105 YTCPTTMQEL 114 (450)
Q Consensus 105 ~~cP~~~~~l 114 (450)
..|+.|+..+
T Consensus 58 ~~C~~C~~~f 67 (82)
T 2kmk_A 58 HKCQVCGKAF 67 (82)
T ss_dssp EECTTTSCEE
T ss_pred CcCCCcchhh
Confidence 3466665443
No 281
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=30.01 E-value=11 Score=28.08 Aligned_cols=55 Identities=18% Similarity=0.258 Sum_probs=33.7
Q ss_pred cchHHHHHhhhccCCCCeeeCcCCCC-CCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCCCCCcchHHH
Q 041252 52 LDLKKMIAELDLAEIPSVFVCPISLE-PMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWDDSVTPNKTL 125 (450)
Q Consensus 52 ~~~~~~~~~~~~~~~p~~~~Cpi~~~-~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~~n~~L 125 (450)
..|.+++.+++.. -...|.||-|+. .+.+|-+ |...||.|+..+.--...|+...
T Consensus 11 ~~lRk~vk~ie~~-q~~~y~Cp~CG~~~v~r~at------------------GiW~C~~Cg~~~aggay~~~t~~ 66 (83)
T 1vq8_Z 11 RVSRRRVAEIESE-MNEDHACPNCGEDRVDRQGT------------------GIWQCSYCDYKFTGGSYKPETPG 66 (83)
T ss_dssp HHHHHHHHHHHHH-HHSCEECSSSCCEEEEEEET------------------TEEEETTTCCEEECCSSSSSCHH
T ss_pred hHHHHHHHHHHHh-ccccCcCCCCCCcceeccCC------------------CeEECCCCCCEecCCEecccchH
Confidence 3455555554421 224689999996 5555542 45678888887766666666543
No 282
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=29.92 E-value=69 Score=23.82 Aligned_cols=34 Identities=3% Similarity=0.068 Sum_probs=26.6
Q ss_pred CCCCeeeCcCCCCCCCCCeeCC---CCCcccHHHHHHH
Q 041252 65 EIPSVFVCPISLEPMQDPVTLC---TGQTYERSNILKW 99 (450)
Q Consensus 65 ~~p~~~~Cpi~~~~m~dPv~~~---~g~ty~r~~I~~~ 99 (450)
++|.+-.|+||...-.+- ..+ ||..|=-.|+++-
T Consensus 11 ~~~~D~~C~VC~~~t~~~-l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVWTAES-LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCCCSSC-CSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccccccccc-eeccccccccccHhhcccc
Confidence 677889999998765543 333 8999999999995
No 283
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=29.87 E-value=1.2e+02 Score=28.35 Aligned_cols=134 Identities=14% Similarity=0.102 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHhcCCCchhhhhccC--CCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhh--hhHHHHHHH
Q 041252 207 AVGSEAVGVLVNLTLDSESKTNLMQ--PAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSS--HRLLIGLMR 282 (450)
Q Consensus 207 ~v~~~Al~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~--~g~l~~Lv~ 282 (450)
+..+.|+..|..+|.+-..-..|++ ...+..|+ +.....+.+++.|+.+|..-...|+.....+.. ..++..++.
T Consensus 43 ~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 43 ARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 3556777778888877666556654 22333333 223346788999999988776666544333322 234444443
Q ss_pred HHhc----C--CCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCC--ChhHHHHHHHHHHHhc
Q 041252 283 LVKN----K--RHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSL--DPDCLQLALCILDALS 345 (450)
Q Consensus 283 lL~~----~--~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~--~~~~~~~al~~L~~L~ 345 (450)
-|.. . .....++.-+++|..|..++. .+ ...++..|.+++... ++.++..++.++..+-
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 3322 1 122346677788888886642 11 134667777777555 7888888888877665
No 284
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=29.82 E-value=28 Score=26.06 Aligned_cols=10 Identities=10% Similarity=0.504 Sum_probs=5.9
Q ss_pred CCCCCcCCcC
Q 041252 105 YTCPTTMQEL 114 (450)
Q Consensus 105 ~~cP~~~~~l 114 (450)
+.|+.|+..+
T Consensus 74 ~~C~~C~~~f 83 (106)
T 2ee8_A 74 FKCQECGKGF 83 (106)
T ss_dssp TSCSSSCCCC
T ss_pred eECCCcCCcc
Confidence 4577776544
No 285
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=29.43 E-value=6.7e+02 Score=28.46 Aligned_cols=275 Identities=10% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCCCCChhhHHHHHHHHHhcCCCchhhhhc-
Q 041252 151 ASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGPFTSHAVGSEAVGVLVNLTLDSESKTNL- 229 (450)
Q Consensus 151 i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~v~~~Al~~L~~Ls~~~~~k~~i- 229 (450)
...++..+...+...|...+..|-.+..++..... +..|..+|.. +....-..+.+|.+|..+++....+
T Consensus 159 ~~ki~~vl~vap~~lQ~diI~sLPeIl~ds~H~~v-------~~~L~~lL~~--~~~L~~~iLdaLs~L~Ls~~~l~~vr 229 (1323)
T 3s4w_B 159 TAQMMQLISVAPVNLQHDFITSLPEILGDSQHANV-------GKELGELLVQ--NTSLTVPILDVFSSLRLDPNFLSKIR 229 (1323)
T ss_dssp HHHHHHHHHHSCTTTHHHHHHTHHHHSCGGGHHHH-------HHHHHHHHHH--CSTTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHhHHHhcchhhHHH-------HHHHHHHHhc--CcchHHHHHHHHHcCCCCHHHHHHHH
Q ss_pred ---------cCCCchHHHHHHhcCC-CHHHHHHHHHHHHH----------------------HhccCCChhhHhhhhhHH
Q 041252 230 ---------MQPAKVSLLVDMLNEG-SVETKINCTRLIEK----------------------LMEEKDFRPEIVSSHRLL 277 (450)
Q Consensus 230 ---------~~~g~i~~Lv~lL~~~-~~~~~~~aa~~L~~----------------------La~~~~~~~~~~~~~g~l 277 (450)
+....+|.+|++|-.. +.+....+...|+. ..................
T Consensus 230 ~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~ 309 (1323)
T 3s4w_B 230 QLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCI 309 (1323)
T ss_dssp HHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHCC----------------------------CHHHHHH
T ss_pred HHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCccccccccchH
Q ss_pred HHHHHHHhcC--CCccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCC-------
Q 041252 278 IGLMRLVKNK--RHPNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELL-PSLDPDCLQLALCILDALSSL------- 347 (450)
Q Consensus 278 ~~Lv~lL~~~--~~~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL-~~~~~~~~~~al~~L~~L~~~------- 347 (450)
..++..++.+ .++.+.++.++++.++....+ .-+++.++-++ .+.+...+..+-.++.+....
T Consensus 310 ~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~-------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~l 382 (1323)
T 3s4w_B 310 VLVFDVIKSAIRYEKTISEAWFKAIERIESAAE-------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQL 382 (1323)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTT-------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhCCCcccc-------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHH
Q ss_pred ----hhhHHHHhccCCChHHHH----HHHhcCChHHHHHHHHHHHHhcccCchhHHHHHHhcChHHHHHHHHHcCCCHHH
Q 041252 348 ----PEGKLALKDCANTIPNTV----RLLMRVSEDCTQYALSILWSICKIAPEECSSAAVDAGLAAKLFLVIQSGCNPVL 419 (450)
Q Consensus 348 ----~e~r~~i~~~~g~i~~Lv----~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~~L~~ll~s~~~~~~ 419 (450)
-.+...+.+ .-.+.++ .++.+..+.+.+.+...-..+-....+-++++ ++..|+..+.+| +..-
T Consensus 383 l~~~f~~h~~vL~--~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqe-----Vl~~Lv~hi~sg-~~~e 454 (1323)
T 3s4w_B 383 LDSAFSTHYLVLK--DICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQE-----VVGALVTHVCSG-TEAE 454 (1323)
T ss_dssp HHHHHHHHHHHHT--TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHH-----HHHHHHHHHHHC-CHHH
T ss_pred HHHHHHhhHHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHH-----HHHHHHhhhcCC-CcHH
Q ss_pred HHHHHHHHHHHHhhcCCCcccccccccccc
Q 041252 420 KQRSAELLKLCSLNYTDTTFISKCKLTRTI 449 (450)
Q Consensus 420 k~~A~~lL~~ls~~~~~~~~i~~~~~~~~~ 449 (450)
...|..+|..+...+.....-....|.|-+
T Consensus 455 Vd~ALdvL~~L~~~~~~~l~~~a~~l~giL 484 (1323)
T 3s4w_B 455 VDTALDVLLELIVLNASAMRLNAAFVKGIL 484 (1323)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHTHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCHHHHhHHHHHHHHHH
No 286
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.27 E-value=29 Score=24.25 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=24.1
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccHHHHHHHH
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYERSNILKWF 100 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r~~I~~~~ 100 (450)
++-|.|..|+..+.+ +.....|.-||+.+..+-+
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 31 EHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65 (72)
T ss_dssp TTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHT
T ss_pred cccCeECCCCCcCCCCccCCcCCeEECHHHHHHHc
Confidence 456888888877775 5555678888887775543
No 287
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=29.27 E-value=2.4e+02 Score=23.24 Aligned_cols=72 Identities=8% Similarity=0.022 Sum_probs=53.1
Q ss_pred hcHHHHHHHhh-ccchHHHHHHHHHHHHHHHHc-HHHHHHHHhhCChHH-HHhhhCCC--CChhhHHHHHHHHHhcC
Q 041252 149 GRASELLGTLK-KVKGQARVQALKELHQIAAAH-ASARKTMVDEGGVAL-ISSLLGPF--TSHAVGSEAVGVLVNLT 220 (450)
Q Consensus 149 ~~i~~Lv~~L~-~~~~~~~~~Al~~L~~l~~~~-~~~r~~i~~~G~i~~-Lv~lL~~~--~~~~v~~~Al~~L~~Ls 220 (450)
..+..|...|+ ..++.++..|+..|..+.++. ......+.+...+.. |+.++... ....+++.++..+..-+
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 45667788887 477889999999999999874 666777777777776 78887532 23478888887777643
No 288
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.02 E-value=56 Score=25.37 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=30.3
Q ss_pred CCeeeCcCCCCCCCC---CeeCCCCCcccHHHHHHHHhc
Q 041252 67 PSVFVCPISLEPMQD---PVTLCTGQTYERSNILKWFSL 102 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d---Pv~~~~g~ty~r~~I~~~~~~ 102 (450)
|+-|.|..|+..+.+ +.....|.-||+.+..+-+..
T Consensus 28 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred HhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 467999999999975 677789999999998887664
No 289
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.83 E-value=29 Score=21.44 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=9.9
Q ss_pred eeCcCCCCCCCCCe
Q 041252 70 FVCPISLEPMQDPV 83 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv 83 (450)
|.|++|...|..+-
T Consensus 13 ~~C~~C~k~f~~~~ 26 (46)
T 2ytm_A 13 YKCMECGKAFGDNS 26 (46)
T ss_dssp SSBTTTTBCCSSHH
T ss_pred cCCCCCCchhCCHH
Confidence 77888877666543
No 290
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.75 E-value=9.8 Score=28.32 Aligned_cols=37 Identities=14% Similarity=0.382 Sum_probs=23.8
Q ss_pred CeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc----CCCCCCCcCCcCC
Q 041252 68 SVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL----GRYTCPTTMQELW 115 (450)
Q Consensus 68 ~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~----~~~~cP~~~~~l~ 115 (450)
..+.||+|+..|... ..+.+.... ..+.|+.|+..|.
T Consensus 27 ~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 27 ECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp TTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEES
T ss_pred CCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeC
Confidence 458899988866654 334454432 1356999987764
No 291
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.58 E-value=25 Score=21.63 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=9.4
Q ss_pred eeCcCCCCCCCCC
Q 041252 70 FVCPISLEPMQDP 82 (450)
Q Consensus 70 ~~Cpi~~~~m~dP 82 (450)
|.|++|+..|..+
T Consensus 13 ~~C~~C~k~f~~~ 25 (46)
T 2eov_A 13 YKCSDCGKSFTWK 25 (46)
T ss_dssp CBCSSSCCBCSSH
T ss_pred ccCCccChhhCCH
Confidence 7888887766554
No 292
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.51 E-value=27 Score=21.54 Aligned_cols=14 Identities=7% Similarity=0.271 Sum_probs=10.0
Q ss_pred eeCcCCCCCCCCCe
Q 041252 70 FVCPISLEPMQDPV 83 (450)
Q Consensus 70 ~~Cpi~~~~m~dPv 83 (450)
|.|++|...|..+.
T Consensus 13 ~~C~~C~k~f~~~~ 26 (46)
T 2ytt_A 13 YQCSECGKSFSGSY 26 (46)
T ss_dssp TCCSSSCCCCSSHH
T ss_pred eeCCCCCcccCCHH
Confidence 77888887766553
No 293
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=28.24 E-value=2.2e+02 Score=31.35 Aligned_cols=186 Identities=12% Similarity=0.032 Sum_probs=99.9
Q ss_pred hcHHHHHHHhhccchHHHHHHHHHHHHHHHHcHHHHHHHHhhCChHHHHhhhCC---CCChhhHHHHHHHHHhcCCCchh
Q 041252 149 GRASELLGTLKKVKGQARVQALKELHQIAAAHASARKTMVDEGGVALISSLLGP---FTSHAVGSEAVGVLVNLTLDSES 225 (450)
Q Consensus 149 ~~i~~Lv~~L~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~---~~~~~v~~~Al~~L~~Ls~~~~~ 225 (450)
..+..|+..-.+.-.++|..|=..|....+.-+..+..+ +|.+++.|+. ..+++-.+.|+.+|.. ..-.
T Consensus 133 ~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~---k~~~ 204 (997)
T 1vsy_5 133 LLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLI---KKIH 204 (997)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTS---HHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhh---hhhh
Confidence 345566665555667889989888888876555455444 6777777755 3456666666665541 1111
Q ss_pred hhhccCCC----chHHHHHHhcCCCHHHHHHHHHHHHHHhccCC---------------------Ch-------------
Q 041252 226 KTNLMQPA----KVSLLVDMLNEGSVETKINCTRLIEKLMEEKD---------------------FR------------- 267 (450)
Q Consensus 226 k~~i~~~g----~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~---------------------~~------------- 267 (450)
+....+.. .++.|++....+.+.++..+..+...+...-. ..
T Consensus 205 ~~~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~ 284 (997)
T 1vsy_5 205 RKLMTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKK 284 (997)
T ss_dssp HHGGGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTH
T ss_pred hHHhcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHH
Confidence 22222222 24444444344445555554444434421100 00
Q ss_pred -hhHhhh--hhHHHHHHHHHhcCCC--ccchhHHHHHHHHhccChHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHH
Q 041252 268 -PEIVSS--HRLLIGLMRLVKNKRH--PNGILPGLSLLRSICLLNEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILD 342 (450)
Q Consensus 268 -~~~~~~--~g~l~~Lv~lL~~~~~--~~~~~~al~aL~~Ls~~~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~ 342 (450)
.....+ .++...|+.++++..| ......+++.|.+|....+. .....++..+++.+.+..+.++..|..++.
T Consensus 285 ~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~---~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~ 361 (997)
T 1vsy_5 285 KREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES---KPDKRAVFSIISQISTKHPEIIHLVVKSLL 361 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC---CCCHHHHHHHHGGGGGCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 000000 1334444566545456 66667777776666533221 112234557888888888999999998875
Q ss_pred Hhc
Q 041252 343 ALS 345 (450)
Q Consensus 343 ~L~ 345 (450)
.+.
T Consensus 362 ~il 364 (997)
T 1vsy_5 362 STC 364 (997)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 294
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=27.73 E-value=30 Score=21.26 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=9.9
Q ss_pred eeeCcCCCCCCCCC
Q 041252 69 VFVCPISLEPMQDP 82 (450)
Q Consensus 69 ~~~Cpi~~~~m~dP 82 (450)
.|.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ely_A 12 PFKCVECGKGFSRR 25 (46)
T ss_dssp SBCCSSSCCCBSST
T ss_pred CcccCccCcccCCH
Confidence 37888887766654
No 295
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.28 E-value=26 Score=21.58 Aligned_cols=14 Identities=7% Similarity=0.097 Sum_probs=9.6
Q ss_pred eeeCcCCCCCCCCC
Q 041252 69 VFVCPISLEPMQDP 82 (450)
Q Consensus 69 ~~~Cpi~~~~m~dP 82 (450)
.|.|++|...|...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2em8_A 12 PYKCVECGKGYKRR 25 (46)
T ss_dssp SEECSSSCCEESSH
T ss_pred CeECcccCchhCCH
Confidence 38888887766543
No 296
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=26.84 E-value=17 Score=26.34 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=22.9
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCCC
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELWD 116 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 116 (450)
.|.|++|...|..+..+ +.-+........+.|+.|+..+..
T Consensus 3 ~~~C~~C~k~f~~~~~L-------~~H~~~H~~~~~~~C~~C~k~f~~ 43 (88)
T 1llm_C 3 PFQCRICMRNFSRSDHL-------TTHIRTHTGEKPFACDICGRKFAR 43 (88)
T ss_dssp CEECTTTCCEESCHHHH-------HHHHHHHHCCCCEECTTTCCEESS
T ss_pred CCcCCCCCCccCCHHHH-------HHHHHHcCCCCCccCCCCCCccCC
Confidence 38899988766654322 111222222234579999876643
No 297
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=26.80 E-value=37 Score=29.22 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=29.4
Q ss_pred CCeeeCcCCCCCCCCC-eeCCCCCcccHHHHHHHHh
Q 041252 67 PSVFVCPISLEPMQDP-VTLCTGQTYERSNILKWFS 101 (450)
Q Consensus 67 p~~~~Cpi~~~~m~dP-v~~~~g~ty~r~~I~~~~~ 101 (450)
|+-|.|..|+..+.+- .....|.-||+.+..+-+.
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 32 KSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 5789999999998874 5567899999999988764
No 298
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=26.18 E-value=5e+02 Score=25.90 Aligned_cols=112 Identities=14% Similarity=0.133 Sum_probs=76.6
Q ss_pred ccCCCchHHHHHHhcCCCHHHHHHHHHHHHHHhccCCChhhHhhhhhHHHHHHHHHhcCCCcc--chhHHHHHHHHhccC
Q 041252 229 LMQPAKVSLLVDMLNEGSVETKINCTRLIEKLMEEKDFRPEIVSSHRLLIGLMRLVKNKRHPN--GILPGLSLLRSICLL 306 (450)
Q Consensus 229 i~~~g~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~~~~~~g~l~~Lv~lL~~~~~~~--~~~~al~aL~~Ls~~ 306 (450)
+.+-=.+.-++..|.+++......|+.+|. ...-+.++...+++..|+.++-++..+- +..+.=.++..|+++
T Consensus 112 VLevysve~i~~aL~S~~~~l~~~~ckVI~-----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lssd 186 (500)
T 3vld_A 112 VLEVYSAEDLVKALRSEIDPLKVAACRVIE-----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTD 186 (500)
T ss_dssp HHHHSCHHHHHHHHTSSCHHHHHHHHHHHH-----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHhCCHHHHHHHHhcCChHHHHHHHHHhc-----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCch
Confidence 334446888999999999999999998887 2334567888899999999998764332 334444567777777
Q ss_pred hHHHHHHHhcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC
Q 041252 307 NEVRSLVVSIGAVPQLVELLPSLDPDCLQLALCILDALSS 346 (450)
Q Consensus 307 ~~~~~~iv~~G~v~~Lv~lL~~~~~~~~~~al~~L~~L~~ 346 (450)
+=.|.++.+. ..|.|..+=++.++-+...-+..|..+..
T Consensus 187 eLirrril~n-nl~lL~~vK~~~~~i~~sRLLdll~il~~ 225 (500)
T 3vld_A 187 ELIRRRLFDN-NLPYLVSVKGRMETVSFVRLIDFLTIEFQ 225 (500)
T ss_dssp HHHHHHHHTT-THHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-hHHHHHHHhcCCCceeHHHHHHHHHHHhc
Confidence 7677777764 45555554444555555556666665543
No 299
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=26.06 E-value=30 Score=26.57 Aligned_cols=13 Identities=23% Similarity=0.283 Sum_probs=7.7
Q ss_pred eeeCcCCCCCCCC
Q 041252 69 VFVCPISLEPMQD 81 (450)
Q Consensus 69 ~~~Cpi~~~~m~d 81 (450)
.|.|++|...|..
T Consensus 35 ~~~C~~C~~~f~~ 47 (124)
T 2dlq_A 35 PFECPKCGKCYFR 47 (124)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeECCCCCchhcC
Confidence 3667776665543
No 300
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.74 E-value=24 Score=25.47 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=22.3
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccHHHHHHHHh
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYERSNILKWFS 101 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r~~I~~~~~ 101 (450)
++-|.|..|...|.+ +.....|.-||+.+..+.+.
T Consensus 39 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 74 (79)
T 1x62_A 39 PECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVS 74 (79)
T ss_dssp TTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHS
T ss_pred cCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhC
Confidence 445777777776654 34555677777777666554
No 301
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.29 E-value=22 Score=25.00 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=22.0
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHh---cCCCCCCCcCCcCC
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFS---LGRYTCPTTMQELW 115 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~---~~~~~cP~~~~~l~ 115 (450)
.|.|++|...|...-.+ +.-+..... ...+.|+.|+..+.
T Consensus 7 ~~~C~~C~k~f~~~~~L-------~~H~~~h~~~~~~~~~~C~~C~k~f~ 49 (78)
T 2d9h_A 7 GLQCEICGFTCRQKASL-------NWHQRKHAETVAALRFPCEFCGKRFE 49 (78)
T ss_dssp CEECSSSCCEESSHHHH-------HHHHHHHHHHTTTCCEECTTTCCEES
T ss_pred CeECCCCCCeeCCHHHH-------HHHHHHhhccCCCcccCCCCCCchhC
Confidence 48899887766554322 111222221 22456999987654
No 302
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=25.08 E-value=44 Score=26.45 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=30.3
Q ss_pred CCeeeCcCCCCCCC--CCeeCCCCCcccHHHHHHHHhc
Q 041252 67 PSVFVCPISLEPMQ--DPVTLCTGQTYERSNILKWFSL 102 (450)
Q Consensus 67 p~~~~Cpi~~~~m~--dPv~~~~g~ty~r~~I~~~~~~ 102 (450)
++-|.|-.|...+. +......|.-||+.|..+.+..
T Consensus 34 ~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH
T ss_pred cccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc
Confidence 56799999999984 5677789999999999998763
No 303
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=24.85 E-value=34 Score=21.03 Aligned_cols=13 Identities=8% Similarity=0.294 Sum_probs=9.5
Q ss_pred eeCcCCCCCCCCC
Q 041252 70 FVCPISLEPMQDP 82 (450)
Q Consensus 70 ~~Cpi~~~~m~dP 82 (450)
|.|++|...|..+
T Consensus 13 ~~C~~C~k~F~~~ 25 (46)
T 2emk_A 13 YECKECGKAFSQT 25 (46)
T ss_dssp CBCSSSCCBCSCH
T ss_pred eECCCCCchhCCH
Confidence 7888887766654
No 304
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.81 E-value=18 Score=26.56 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=6.2
Q ss_pred CCCCCcCCcC
Q 041252 105 YTCPTTMQEL 114 (450)
Q Consensus 105 ~~cP~~~~~l 114 (450)
+.|+.|+..+
T Consensus 66 ~~C~~C~~~f 75 (95)
T 2yt9_A 66 YICQSCGKGF 75 (95)
T ss_dssp BCCSSSCCCB
T ss_pred eECCCccchh
Confidence 4577776554
No 305
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=24.42 E-value=16 Score=30.90 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=8.3
Q ss_pred CCCCCCcCCcC
Q 041252 104 RYTCPTTMQEL 114 (450)
Q Consensus 104 ~~~cP~~~~~l 114 (450)
...||.|+.++
T Consensus 148 ~~~Cp~CG~~~ 158 (165)
T 2lcq_A 148 GGVCPDCGSKV 158 (165)
T ss_dssp GGBCTTTCCBE
T ss_pred CCcCCCCCCcc
Confidence 35799998764
No 306
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=24.10 E-value=66 Score=28.99 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=28.0
Q ss_pred CCCCcccHHHHHHHHhcC-CCCCCCcCCcCCC-----CCCcchHHHHHHHHHHHHh
Q 041252 86 CTGQTYERSNILKWFSLG-RYTCPTTMQELWD-----DSVTPNKTLYHLIHTWFSQ 135 (450)
Q Consensus 86 ~~g~ty~r~~I~~~~~~~-~~~cP~~~~~l~~-----~~l~~n~~L~~~I~~w~~~ 135 (450)
.||++|++..+.+.+..+ .+.||.|+..+.+ .+..|...+..+. +|.++
T Consensus 126 ~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a~-~~~~~ 180 (246)
T 1yc5_A 126 RCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAI-GLSSR 180 (246)
T ss_dssp TTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHH-HHHHH
T ss_pred CCCCCCcHHHHHHHhccCCCCCCCCCCCccCcceEECCCCCCHHHHHHHH-HHHhc
Confidence 477778877666554432 4679999876543 2334555554433 34443
No 307
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.09 E-value=29 Score=21.32 Aligned_cols=14 Identities=7% Similarity=0.173 Sum_probs=9.2
Q ss_pred eeeCcCCCCCCCCC
Q 041252 69 VFVCPISLEPMQDP 82 (450)
Q Consensus 69 ~~~Cpi~~~~m~dP 82 (450)
.|.|++|+..|..+
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2emy_A 12 PYECHECGKAFSRK 25 (46)
T ss_dssp CEECSSSCCEESSH
T ss_pred CcCCCCCCcccCcH
Confidence 37888877655543
No 308
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.99 E-value=29 Score=21.28 Aligned_cols=14 Identities=14% Similarity=0.565 Sum_probs=9.6
Q ss_pred eeeCcCCCCCCCCC
Q 041252 69 VFVCPISLEPMQDP 82 (450)
Q Consensus 69 ~~~Cpi~~~~m~dP 82 (450)
.|.|++|...|..+
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2emh_A 12 PYICTVCGKAFTDR 25 (46)
T ss_dssp SEECTTTCCEESSH
T ss_pred CcCCCCCCchhCCH
Confidence 37888877766554
No 309
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.56 E-value=42 Score=23.37 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=24.8
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccHHHHHHHH
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYERSNILKWF 100 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r~~I~~~~ 100 (450)
++-|.|..|+..+.+ +.....|.-||+.+..+.+
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1x4k_A 31 ETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQH 65 (72)
T ss_dssp TTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHT
T ss_pred ccCCcccccCCccCCCccCccCCeEECHHHHhHHh
Confidence 456888888887776 3555678888888876653
No 310
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.55 E-value=65 Score=22.91 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=25.6
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccHHHHHHHH
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYERSNILKWF 100 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r~~I~~~~ 100 (450)
++-|.|..|+..+.+ ......|.-||+.+..+-+
T Consensus 39 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f 73 (80)
T 1x3h_A 39 PECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRR 73 (80)
T ss_dssp TTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHH
T ss_pred cCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHc
Confidence 456889999988876 4556688889988876644
No 311
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.52 E-value=32 Score=21.11 Aligned_cols=14 Identities=7% Similarity=0.076 Sum_probs=9.5
Q ss_pred eeeCcCCCCCCCCC
Q 041252 69 VFVCPISLEPMQDP 82 (450)
Q Consensus 69 ~~~Cpi~~~~m~dP 82 (450)
.|.|++|+..|..+
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2eoo_A 12 PYGCNECGKNFGRH 25 (46)
T ss_dssp CEECSSSCCEESSH
T ss_pred CEEccccCcccCCH
Confidence 38888877765544
No 312
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.45 E-value=34 Score=20.95 Aligned_cols=14 Identities=7% Similarity=0.140 Sum_probs=9.5
Q ss_pred eeeCcCCCCCCCCC
Q 041252 69 VFVCPISLEPMQDP 82 (450)
Q Consensus 69 ~~~Cpi~~~~m~dP 82 (450)
.|.|++|+..|..+
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2emp_A 12 PYMCNECGKAFSVY 25 (46)
T ss_dssp SEECSSSCCEESCH
T ss_pred CeECCCCCchhCCH
Confidence 38888887765544
No 313
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.16 E-value=32 Score=27.27 Aligned_cols=10 Identities=20% Similarity=0.607 Sum_probs=7.9
Q ss_pred CC-CCCCcCCc
Q 041252 104 RY-TCPTTMQE 113 (450)
Q Consensus 104 ~~-~cP~~~~~ 113 (450)
.. .||.|+.+
T Consensus 89 ~~~~CP~Cgs~ 99 (119)
T 2kdx_A 89 DYGVCEKCHSK 99 (119)
T ss_dssp TTCCCSSSSSC
T ss_pred CCCcCccccCC
Confidence 56 79999875
No 314
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.10 E-value=51 Score=23.01 Aligned_cols=32 Identities=6% Similarity=-0.081 Sum_probs=23.7
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccHHHHHH
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYERSNILK 98 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r~~I~~ 98 (450)
++-|.|..|...+.+ +.....|.-||+.+..+
T Consensus 33 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 65 (72)
T 1x4l_A 33 NDCFNCKKCSLSLVGRGFLTERDDILCPDCGKD 65 (72)
T ss_dssp TTTCBCSSSCCBCTTSCCEECSSSEECHHHHHT
T ss_pred cccCEeccCCCcCCCCccEeECCEEEChhHcCc
Confidence 456899999887765 44557888899888643
No 315
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.09 E-value=58 Score=24.02 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=27.6
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccHHHHHHHHh
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYERSNILKWFS 101 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r~~I~~~~~ 101 (450)
++-|.|-.|...+.+ +.....|.-||+.+..+-+.
T Consensus 40 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 75 (91)
T 2d8y_A 40 ISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 75 (91)
T ss_dssp TTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSC
T ss_pred CCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhC
Confidence 456999999988886 46677899999999876544
No 316
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.88 E-value=35 Score=24.17 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=24.6
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccHHHHHHH
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYERSNILKW 99 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r~~I~~~ 99 (450)
++-|.|..|+..+.+ +.....|.-||+.+..+-
T Consensus 37 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 70 (77)
T 1g47_A 37 EQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70 (77)
T ss_dssp TTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHH
T ss_pred cccCeECCCCCCCCCCCeEeECCeEeCHHHHHHH
Confidence 456888888888875 555668888888887554
No 317
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.77 E-value=29 Score=21.32 Aligned_cols=14 Identities=7% Similarity=0.226 Sum_probs=9.2
Q ss_pred eeeCcCCCCCCCCC
Q 041252 69 VFVCPISLEPMQDP 82 (450)
Q Consensus 69 ~~~Cpi~~~~m~dP 82 (450)
.|.|++|...|..+
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ytd_A 12 PYKCSECGKAFHRH 25 (46)
T ss_dssp SEECSSSCCEESSH
T ss_pred CeECCCCCCeeCCh
Confidence 38888877655543
No 318
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=22.71 E-value=26 Score=25.17 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=8.3
Q ss_pred eeeCcCCCCCCCC
Q 041252 69 VFVCPISLEPMQD 81 (450)
Q Consensus 69 ~~~Cpi~~~~m~d 81 (450)
.|.|++|...|..
T Consensus 34 ~~~C~~C~~~f~~ 46 (90)
T 1a1h_A 34 PFQCRICMRNFSR 46 (90)
T ss_dssp CEECTTTCCEESC
T ss_pred CccCCCCCcccCC
Confidence 3778777665544
No 319
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=22.62 E-value=66 Score=26.76 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=51.2
Q ss_pred ChHHHHHHHhc-CChHHHHHHHHHHHHhcccCchhHHHHHHhcChHH-HHHHHHHc--CCCHHHHHHHHHHHHHHHhhcC
Q 041252 360 TIPNTVRLLMR-VSEDCTQYALSILWSICKIAPEECSSAAVDAGLAA-KLFLVIQS--GCNPVLKQRSAELLKLCSLNYT 435 (450)
Q Consensus 360 ~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~~G~i~-~L~~ll~s--~~~~~~k~~A~~lL~~ls~~~~ 435 (450)
++..|.+-|.. .++.++..|+.+|-.+.+++......++.....+. .|+.++.. .....+|++...++..-+...+
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 34566677764 46777888999999998888655444544433443 24555532 2235799999999998887655
Q ss_pred CC
Q 041252 436 DT 437 (450)
Q Consensus 436 ~~ 437 (450)
+.
T Consensus 134 ~~ 135 (152)
T 3rru_A 134 GG 135 (152)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 320
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.34 E-value=32 Score=21.10 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=9.1
Q ss_pred eeCcCCCCCCCCC
Q 041252 70 FVCPISLEPMQDP 82 (450)
Q Consensus 70 ~~Cpi~~~~m~dP 82 (450)
|.|++|...|...
T Consensus 13 ~~C~~C~k~f~~~ 25 (46)
T 2eoq_A 13 FKCDICGKSFCGR 25 (46)
T ss_dssp CCCSSSCCCCSSH
T ss_pred cCCCcCCchhCCH
Confidence 7788877766543
No 321
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.31 E-value=12 Score=25.91 Aligned_cols=36 Identities=6% Similarity=-0.004 Sum_probs=21.8
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc----CCCCCCCcCCcCC
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL----GRYTCPTTMQELW 115 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~----~~~~cP~~~~~l~ 115 (450)
.|.|++|...|... ..+...... ..+.|+.|+..+.
T Consensus 9 ~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~~~~~C~~C~~~f~ 48 (70)
T 1x5w_A 9 PEKCSECSYSCSSK-----------AALRIHERIHCTDRPFKCNYCSFDTK 48 (70)
T ss_dssp SEECSSSSCEESSH-----------HHHHHHHGGGCCSCSEECSSSSCEES
T ss_pred CeECCCCCcccCCH-----------HHHHHHHHHcCCCCCEeCCCCCCccC
Confidence 48898887766543 234444432 1356999987654
No 322
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=21.77 E-value=48 Score=36.63 Aligned_cols=38 Identities=24% Similarity=0.489 Sum_probs=26.0
Q ss_pred CCCCeeeCcCCC--CCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcC
Q 041252 65 EIPSVFVCPISL--EPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQEL 114 (450)
Q Consensus 65 ~~p~~~~Cpi~~--~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l 114 (450)
+++.|+.||-|+ +.+.|. ...||+-. -...||.|+.++
T Consensus 498 Pl~phy~c~~c~~~ef~~~~-~~~~g~dl-----------p~k~cp~cg~~~ 537 (1041)
T 3f2b_A 498 PLPPHYVCPNCKHSEFFNDG-SVGSGFDL-----------PDKNCPRCGTKY 537 (1041)
T ss_dssp CSCSEEECTTTCCEEECCSS-CCSCGGGS-----------CCCBCTTTCCBC
T ss_pred CCcccccCcccccccccccc-ccccccCC-----------ccccCccccccc
Confidence 788899999998 344444 23344433 456799998764
No 323
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.68 E-value=39 Score=23.97 Aligned_cols=34 Identities=9% Similarity=0.137 Sum_probs=25.2
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccH-HHHHHHH
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYER-SNILKWF 100 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r-~~I~~~~ 100 (450)
++-|.|..|...+.+ +.....|.-||+ .+..+-+
T Consensus 34 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f 69 (76)
T 2cu8_A 34 KFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLF 69 (76)
T ss_dssp TTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHS
T ss_pred CCCCCCCCCCCccCCCceEeECCEEecchHHHHHhc
Confidence 456899999988875 456668888998 6876543
No 324
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.66 E-value=29 Score=21.23 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=9.4
Q ss_pred eeeCcCCCCCCCCC
Q 041252 69 VFVCPISLEPMQDP 82 (450)
Q Consensus 69 ~~~Cpi~~~~m~dP 82 (450)
.|.|++|...|..+
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2emm_A 12 PHKCNECGKSFIQS 25 (46)
T ss_dssp SEECSSSCCEESSH
T ss_pred CeeCCCCChhhCCH
Confidence 38888887765543
No 325
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.62 E-value=68 Score=22.80 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=26.2
Q ss_pred CCeeeCcCCCCCCCC-CeeCCCCCcccHHHHHHHHh
Q 041252 67 PSVFVCPISLEPMQD-PVTLCTGQTYERSNILKWFS 101 (450)
Q Consensus 67 p~~~~Cpi~~~~m~d-Pv~~~~g~ty~r~~I~~~~~ 101 (450)
++-|.|..|+..+.. ......|..||+.+..+.+.
T Consensus 39 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 74 (80)
T 2cuq_A 39 RECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFA 74 (80)
T ss_dssp TTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTT
T ss_pred hhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcC
Confidence 456889999888864 55667888999888766543
No 326
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.61 E-value=38 Score=20.70 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=10.3
Q ss_pred eeeCcCCCCCCCCCe
Q 041252 69 VFVCPISLEPMQDPV 83 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv 83 (450)
.|.|++|...|...-
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2yu8_A 12 PYKCNECGKVFTQNS 26 (46)
T ss_dssp SEECSSSCCEESSSH
T ss_pred CeECCcCCchhCCHH
Confidence 388888877666543
No 327
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.43 E-value=31 Score=21.16 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=8.8
Q ss_pred eeeCcCCCCCCCC
Q 041252 69 VFVCPISLEPMQD 81 (450)
Q Consensus 69 ~~~Cpi~~~~m~d 81 (450)
.|.|++|...|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ytk_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CEeCCcCCCccCC
Confidence 3788887765554
No 328
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=21.35 E-value=53 Score=28.44 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=30.9
Q ss_pred CCeeeCcCCCCCCC--C-Ce--eCCCC----CcccHHHHH----------HH---HhcCC-----CCCCCcCCcCC
Q 041252 67 PSVFVCPISLEPMQ--D-PV--TLCTG----QTYERSNIL----------KW---FSLGR-----YTCPTTMQELW 115 (450)
Q Consensus 67 p~~~~Cpi~~~~m~--d-Pv--~~~~g----~ty~r~~I~----------~~---~~~~~-----~~cP~~~~~l~ 115 (450)
-..-+|+.|+++-. + .. +.++| ++|||+|-. ++ ++... ..||.|+.+..
T Consensus 73 ~G~K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~lr~YGIT~eey~~L~e~Qg~~~~~G~C~ICg~~~~ 148 (200)
T 3gox_A 73 YDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSI 148 (200)
T ss_dssp SSEEECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHHHCSCCCHHHHHHHHTTCCCTTCEEECTTTCCEEE
T ss_pred CCCeECCCCCCCcchhhhcccccCCCCCcccCccChhhhhccCCcCCCHHHHHHHHHHcccCCCCCcCcCCCCCCC
Confidence 44679999998422 1 11 34578 899999943 22 12223 56999988765
No 329
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=21.28 E-value=26 Score=24.12 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=8.9
Q ss_pred CCCCCCcCCcCC
Q 041252 104 RYTCPTTMQELW 115 (450)
Q Consensus 104 ~~~cP~~~~~l~ 115 (450)
.+.|+.|+..+.
T Consensus 49 ~~~C~~C~~~f~ 60 (73)
T 1f2i_G 49 PFQCRICMRNFS 60 (73)
T ss_dssp CEECTTTCCEES
T ss_pred CeECCCCCchhC
Confidence 456999987664
No 330
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=21.17 E-value=85 Score=22.14 Aligned_cols=10 Identities=10% Similarity=0.551 Sum_probs=6.2
Q ss_pred CCCCCcCCcC
Q 041252 105 YTCPTTMQEL 114 (450)
Q Consensus 105 ~~cP~~~~~l 114 (450)
+.||.|+..+
T Consensus 66 ~~C~~C~~~f 75 (89)
T 2wbs_A 66 FQCQKCDRAF 75 (89)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCCCccc
Confidence 4577776554
No 331
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=21.14 E-value=17 Score=24.63 Aligned_cols=36 Identities=17% Similarity=0.415 Sum_probs=21.4
Q ss_pred eeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhc------CCCCCCCcCCcCC
Q 041252 69 VFVCPISLEPMQDPVTLCTGQTYERSNILKWFSL------GRYTCPTTMQELW 115 (450)
Q Consensus 69 ~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~------~~~~cP~~~~~l~ 115 (450)
.|.|++|...|..+- .+...... ..+.||.|+..+.
T Consensus 10 ~~~C~~C~k~f~~~~-----------~l~~H~~~~H~~~~~~~~C~~C~k~f~ 51 (66)
T 2drp_A 10 TYRCKVCSRVYTHIS-----------NFCRHYVTSHKRNVKVYPCPFCFKEFT 51 (66)
T ss_dssp EEECTTTCCEESSHH-----------HHHHHHHHHSSSSCCCEECTTTCCEES
T ss_pred ceECCCCcchhCCHH-----------HHHHHHHHHcCCCCcCeECCCCCCccC
Confidence 488998877665442 23333221 2346999987664
No 332
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=20.52 E-value=34 Score=25.58 Aligned_cols=41 Identities=17% Similarity=0.502 Sum_probs=24.7
Q ss_pred cCCCCeeeCcCCCCCCCCCeeCCCCCcccHHHHHHHHhcCCCCCCCcCCcCC
Q 041252 64 AEIPSVFVCPISLEPMQDPVTLCTGQTYERSNILKWFSLGRYTCPTTMQELW 115 (450)
Q Consensus 64 ~~~p~~~~Cpi~~~~m~dPv~~~~g~ty~r~~I~~~~~~~~~~cP~~~~~l~ 115 (450)
..+|..|.||.|+-. +-|.. +.+|.. ..+.-.|-.|++.++
T Consensus 18 ~~L~t~F~CPfCnh~--~sV~v----kidk~~-----~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 18 GTLETQFTCPFCNHE--KSCDV----KMDRAR-----NTGVISCTVCLEEFQ 58 (85)
T ss_dssp CCCSSCCCCTTTCCS--SCEEE----EEETTT-----TEEEEEESSSCCEEE
T ss_pred CCCCCeEcCCCCCCC--CeEEE----EEEccC-----CEEEEEcccCCCeEE
Confidence 478999999999863 22322 223321 013456888887654
Done!