BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041256
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 225 bits (573), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/235 (51%), Positives = 159/235 (67%), Gaps = 11/235 (4%)
Query: 8 EEETNNFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNP 67
+EE N F AM+LASA VLP ++++ +ELD+ EII+KAGPGA++S EI +Q+P NP
Sbjct: 16 DEEANLF--AMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPT--TNP 71
Query: 68 EAAAMTLDRVLRLLVSYNALHCSF---VDG--QRLYSLAPVSAYFVRNNQNGASLSPYMA 122
+A M LDR+LRLL Y L CS DG QRLY LA V+ Y V+N ++G S+S
Sbjct: 72 DAPVM-LDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKN-EDGVSISALNL 129
Query: 123 LCLDKVCLDGWFGLKKQLLEGGIAFNKAHGMQIYDYLGVDSRFNDVFNNGMLSHTSIVME 182
+ DKV ++ W+ LK +L+GGI FNKA+GM ++Y G D RFN VFN GM H++I M+
Sbjct: 130 MNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMK 189
Query: 183 KVLESYKGFEHXXXXXXXXXXXXITLNMIISKYPHIKGINYDLPYVIKDAPSYPG 237
K+LE+Y GFE +N I+SKYP IKGIN+DLP+VI+DAPSYPG
Sbjct: 190 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPG 244
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 211 bits (536), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 154/236 (65%), Gaps = 12/236 (5%)
Query: 8 EEETNNFSYAMELASAIVLPAVMQAVVELDVFEIISKA-GPGAKLSVAEIVAQIPLKDNN 66
+EE N F AM+LASA VLP ++A +ELDV EI++K+ P +S AEI AQ+P N
Sbjct: 18 DEEANLF--AMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLP--TTN 73
Query: 67 PEAAAMTLDRVLRLLVSYNALHCSFVD-----GQRLYSLAPVSAYFVRNNQNGASLSPYM 121
PEA M LDRVLRLL SY+ + + + +RLY LAPV F+ N++G SL+P++
Sbjct: 74 PEAPVM-LDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCK-FLTKNEDGVSLAPFL 131
Query: 122 ALCLDKVCLDGWFGLKKQLLEGGIAFNKAHGMQIYDYLGVDSRFNDVFNNGMLSHTSIVM 181
L DKV L+ WF LK +LEGGI FNKA+GM I+DY G D R N VFN GM S+++I M
Sbjct: 132 LLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITM 191
Query: 182 EKVLESYKGFEHXXXXXXXXXXXXITLNMIISKYPHIKGINYDLPYVIKDAPSYPG 237
+K+LE Y GFE +MI++KYP I IN+DLP+VI+DAP++ G
Sbjct: 192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSG 247
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 147/246 (59%), Gaps = 13/246 (5%)
Query: 1 MASIADREEETNNFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQI 60
MA+ AD + +A++LAS+ VLP ++ +EL + EI+ AG G L+ E+ A++
Sbjct: 12 MAASADEDA----CMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKL 66
Query: 61 PLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQ-----RLYSLAPVSAYFVRNNQNGA 115
P NPEA M +DR+LRLL SYN + C +G+ R Y APV F+ N++G
Sbjct: 67 P-SAANPEAPDM-VDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCK-FLTPNEDGV 123
Query: 116 SLSPYMALCLDKVCLDGWFGLKKQLLEGGIAFNKAHGMQIYDYLGVDSRFNDVFNNGMLS 175
S++ + DKV ++ W+ LK +L+GGI FNKA+GM ++Y G D RFN VFN GM +
Sbjct: 124 SMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKN 183
Query: 176 HTSIVMEKVLESYKGFEHXXXXXXXXXXXXITLNMIISKYPHIKGINYDLPYVIKDAPSY 235
H+ I+ +K+LE Y GFE T+ I + YP IKG+N+DLP+VI +AP +
Sbjct: 184 HSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQF 243
Query: 236 PGTLFI 241
PG +
Sbjct: 244 PGVTHV 249
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 137 bits (345), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 137/244 (56%), Gaps = 10/244 (4%)
Query: 1 MASIADREEETNNFSYAMELASAIVLPAVMQAVVELDVFEIISKAGP-GAKLSVAEIVAQ 59
+++ +++ E++ S AM L + +V PAV+ A ++L++FEII+KA P GA +S +EI ++
Sbjct: 13 ISATSEQTEDSACLS-AMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASK 71
Query: 60 IPLKDNNPEAAAMTLDRVLRLLVSYNALHCS---FVDG--QRLYSLAPVSAYFVRNNQNG 114
+P + + LDR+LRLL SY+ L + DG +R+Y L+ V Y V + G
Sbjct: 72 LPASTQHSDLPN-RLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRG 130
Query: 115 ASLSPYMALCLDKVCLDGWFGLKKQLLEGGIA-FNKAHGMQIYDYLGVDSRFNDVFNNGM 173
S LC + L W K+ +++ I F HG+ Y+++G D + N +FN M
Sbjct: 131 YLASFTTFLCYPAL-LQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSM 189
Query: 174 LSHTSIVMEKVLESYKGFEHXXXXXXXXXXXXITLNMIISKYPHIKGINYDLPYVIKDAP 233
+ + M+++LE Y GFE L +IISKYP IKGIN+DLP VI++AP
Sbjct: 190 VDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP 249
Query: 234 SYPG 237
G
Sbjct: 250 PLSG 253
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 128/244 (52%), Gaps = 10/244 (4%)
Query: 1 MASIADREEETNNFSYAMELASAIVLPAVMQAVVELDVFEIISKAGP-GAKLSVAEIVAQ 59
+++ +++ E++ S A L + +V PAV+ A ++L++FEII+KA P GA S +EI ++
Sbjct: 13 ISATSEQTEDSACLS-AXVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFXSPSEIASK 71
Query: 60 IPLKDNNPEAAAMTLDRVLRLLVSYNALHCS---FVDG--QRLYSLAPVSAYFVRNNQNG 114
+P + + R LRLL SY+ L + DG +R+Y L+ V Y V + G
Sbjct: 72 LPASTQHSDLPNRLD-RXLRLLASYSVLTSTTRTIEDGGAERVYGLSXVGKYLVPDESRG 130
Query: 115 ASLSPYMALCLDKVCLDGWFGLKKQLLEGGIA-FNKAHGMQIYDYLGVDSRFNDVFNNGM 173
S LC + L W K+ +++ I F HG+ Y++ G D + N +FN
Sbjct: 131 YLASFTTFLCYPAL-LQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSX 189
Query: 174 LSHTSIVMEKVLESYKGFEHXXXXXXXXXXXXITLNMIISKYPHIKGINYDLPYVIKDAP 233
+ + ++ LE Y GFE L +IISKYP IKGIN+DLP VI++AP
Sbjct: 190 VDVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP 249
Query: 234 SYPG 237
G
Sbjct: 250 PLSG 253
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 10/203 (4%)
Query: 30 MQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89
++ VE+++ II G LS + Q+P + + R++R L ++N
Sbjct: 33 LKWAVEMNIPNIIQNHGKPISLSNLVSILQVP------SSKIGNVRRLMRYL-AHNGFFE 85
Query: 90 SFVDGQRLYSLAPVSAYFVRNNQNGASLSPYMALCLDKVCLDGWFGLKKQLLEGGIA-FN 148
+ Y+L S VR + L+P + LD + LKK + E + F
Sbjct: 86 IITKEEESYALTVASELLVRGSD--LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFG 143
Query: 149 KAHGMQIYDYLGVDSRFNDVFNNGMLSHTSIVMEKVLESYKGFEHXXXXXXXXXXXXITL 208
G +D+L + +N FN+ M S + ++ + + F+ T
Sbjct: 144 VTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTA 203
Query: 209 NMIISKYPHIKGINYDLPYVIKD 231
+I +P +K I +D P V+++
Sbjct: 204 KIICETFPKLKCIVFDRPQVVEN 226
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 82/210 (39%), Gaps = 10/210 (4%)
Query: 23 AIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLV 82
A + ++ VE ++ II G LS + Q+P + + R+ R L
Sbjct: 26 AFIDSXSLKWAVEXNIPNIIQNHGKPISLSNLVSILQVP------SSKIGNVRRLXRYL- 78
Query: 83 SYNALHCSFVDGQRLYSLAPVSAYFVRNNQNGASLSPYMALCLDKVCLDGWFGLKKQLLE 142
++N + Y+L S VR + L+P + LD + LKK + E
Sbjct: 79 AHNGFFEIITKEEESYALTVASELLVRGSD--LCLAPXVECVLDPTLSGSYHELKKWIYE 136
Query: 143 GGIA-FNKAHGMQIYDYLGVDSRFNDVFNNGMLSHTSIVMEKVLESYKGFEHXXXXXXXX 201
+ F G +D+L + +N FN+ S + ++ + + F+
Sbjct: 137 EDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDGLESIVDVG 196
Query: 202 XXXXITLNMIISKYPHIKGINYDLPYVIKD 231
T +I +P +K I +D P V+++
Sbjct: 197 GGTGTTAKIICETFPKLKCIVFDRPQVVEN 226
>pdb|4F67|A Chain A, Three Dimensional Structure Of The Double Mutant Of
Upf0176 Protein Lpg2838 From Legionella Pneumophila At
The Resolution 1.8a, Northeast Structural Genomics
Consortium (Nesg) Target Lgr82
Length = 265
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 127 KVCLDGWFGLKKQLLEGGIAFNKAHGMQIYDYLGVDSRFNDV 168
++ + G L + + GG A N+ YDYL DSRF D+
Sbjct: 42 EIGIKGTIILAHEGVNGGFAGNREQXNVFYDYLRSDSRFADL 83
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 144 GIAFNKAHGMQIYDYLGVDSRFNDVFNNGMLSHTS 178
GI F+ A+ Y Y D +FND FN G+ S S
Sbjct: 92 GIRFDPAN----YPYRTADGKFNDPFNEGVGSQNS 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,651,909
Number of Sequences: 62578
Number of extensions: 245327
Number of successful extensions: 418
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 9
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)