Query 041256
Match_columns 244
No_of_seqs 158 out of 1100
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 08:36:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 6.5E-40 2.2E-44 289.8 17.5 222 9-243 4-235 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 5.3E-39 1.8E-43 285.0 22.8 231 7-243 14-251 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 8.3E-39 2.8E-43 284.1 22.1 231 9-243 17-253 (368)
4 1zg3_A Isoflavanone 4'-O-methy 100.0 3.4E-36 1.2E-40 266.1 18.4 228 7-243 4-243 (358)
5 1fp2_A Isoflavone O-methyltran 100.0 6.5E-36 2.2E-40 263.8 18.2 227 6-243 9-238 (352)
6 3lst_A CALO1 methyltransferase 100.0 1.4E-35 4.9E-40 261.2 19.2 216 9-242 18-238 (348)
7 1fp1_D Isoliquiritigenin 2'-O- 100.0 3.6E-35 1.2E-39 260.9 20.8 232 3-242 12-258 (372)
8 3gwz_A MMCR; methyltransferase 100.0 3E-35 1E-39 261.2 16.2 216 10-242 35-258 (369)
9 3i53_A O-methyltransferase; CO 100.0 3.2E-35 1.1E-39 257.2 13.1 213 14-243 6-226 (332)
10 2ip2_A Probable phenazine-spec 100.0 5.6E-34 1.9E-38 249.3 17.2 210 12-242 7-223 (334)
11 3dp7_A SAM-dependent methyltra 100.0 2.9E-33 1E-37 247.9 13.4 215 6-242 8-235 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 6.7E-32 2.3E-36 239.4 15.2 207 11-234 14-223 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 7.4E-31 2.5E-35 231.6 16.2 205 13-234 19-224 (360)
14 1x19_A CRTF-related protein; m 100.0 3.9E-30 1.3E-34 227.2 17.3 207 7-242 24-246 (359)
15 2r3s_A Uncharacterized protein 100.0 1.6E-29 5.4E-34 220.7 16.3 198 13-234 6-206 (335)
16 3mcz_A O-methyltransferase; ad 100.0 6.9E-29 2.4E-33 218.4 15.8 209 5-242 17-235 (352)
17 2qm3_A Predicted methyltransfe 98.8 9.2E-09 3.1E-13 90.9 6.4 159 37-234 47-213 (373)
18 1ve3_A Hypothetical protein PH 97.9 4.7E-06 1.6E-10 67.3 2.9 40 193-234 38-78 (227)
19 2fca_A TRNA (guanine-N(7)-)-me 97.7 4.1E-05 1.4E-09 61.9 5.0 42 193-234 38-80 (213)
20 3ege_A Putative methyltransfer 97.7 9.6E-05 3.3E-09 61.3 7.3 57 182-241 24-81 (261)
21 3dtn_A Putative methyltransfer 97.7 6.9E-05 2.3E-09 60.8 6.3 52 183-234 34-86 (234)
22 3e05_A Precorrin-6Y C5,15-meth 97.6 6.2E-05 2.1E-09 60.0 5.4 51 183-234 31-82 (204)
23 3mq2_A 16S rRNA methyltransfer 97.6 8.2E-05 2.8E-09 59.8 6.0 40 191-230 25-65 (218)
24 1yzh_A TRNA (guanine-N(7)-)-me 97.6 5.8E-05 2E-09 60.7 5.0 42 193-234 41-83 (214)
25 3dxy_A TRNA (guanine-N(7)-)-me 97.6 5.9E-05 2E-09 61.3 5.0 49 193-241 34-89 (218)
26 4dzr_A Protein-(glutamine-N5) 97.5 0.0001 3.5E-09 58.6 5.4 52 183-234 20-72 (215)
27 2qe6_A Uncharacterized protein 97.5 0.00011 3.9E-09 61.8 5.5 50 192-241 76-133 (274)
28 2p35_A Trans-aconitate 2-methy 97.5 8E-05 2.7E-09 61.3 4.4 57 183-240 24-82 (259)
29 3g07_A 7SK snRNA methylphospha 97.5 9E-05 3.1E-09 62.8 4.4 42 193-234 46-88 (292)
30 3ckk_A TRNA (guanine-N(7)-)-me 97.5 0.00013 4.3E-09 60.1 5.1 41 192-232 45-86 (235)
31 3hm2_A Precorrin-6Y C5,15-meth 97.4 9.1E-05 3.1E-09 57.3 4.0 51 183-234 16-67 (178)
32 1jg1_A PIMT;, protein-L-isoasp 97.4 5.2E-05 1.8E-09 62.0 2.7 52 181-234 80-132 (235)
33 3ou2_A SAM-dependent methyltra 97.4 0.00027 9.3E-09 56.3 6.9 58 182-241 35-95 (218)
34 3vc1_A Geranyl diphosphate 2-C 97.4 0.00023 7.9E-09 60.7 6.5 65 168-234 93-158 (312)
35 3dlc_A Putative S-adenosyl-L-m 97.4 7.4E-05 2.5E-09 59.6 3.2 50 182-234 34-84 (219)
36 3g5t_A Trans-aconitate 3-methy 97.4 0.00024 8.1E-09 60.1 6.5 43 192-234 35-79 (299)
37 2plw_A Ribosomal RNA methyltra 97.4 0.00029 9.8E-09 55.7 6.4 45 183-227 12-58 (201)
38 3p2e_A 16S rRNA methylase; met 97.4 0.00019 6.5E-09 58.6 5.5 46 182-229 15-61 (225)
39 3gjy_A Spermidine synthase; AP 97.4 0.00012 4E-09 63.1 4.4 41 194-234 90-131 (317)
40 3mgg_A Methyltransferase; NYSG 97.4 0.00015 5.2E-09 60.4 4.7 44 191-234 35-79 (276)
41 1yb2_A Hypothetical protein TA 97.4 9.4E-05 3.2E-09 62.0 3.3 51 183-234 101-153 (275)
42 3dli_A Methyltransferase; PSI- 97.3 0.00032 1.1E-08 57.2 6.3 49 184-234 32-81 (240)
43 3dh0_A SAM dependent methyltra 97.3 0.00014 4.6E-09 58.4 4.0 52 182-234 27-80 (219)
44 2vdv_E TRNA (guanine-N(7)-)-me 97.3 0.0002 7E-09 58.9 5.1 41 192-232 48-89 (246)
45 3g5l_A Putative S-adenosylmeth 97.3 0.00027 9.2E-09 58.0 5.7 57 183-241 35-95 (253)
46 4gek_A TRNA (CMO5U34)-methyltr 97.3 0.00017 5.7E-09 60.4 4.4 43 192-234 69-114 (261)
47 4hg2_A Methyltransferase type 97.3 0.00021 7.1E-09 59.7 4.9 47 193-241 39-86 (257)
48 3ujc_A Phosphoethanolamine N-m 97.3 0.00017 5.8E-09 59.4 4.3 58 182-241 45-107 (266)
49 1vl5_A Unknown conserved prote 97.3 0.00015 5E-09 60.0 3.9 50 182-234 27-77 (260)
50 3kkz_A Uncharacterized protein 97.3 0.00019 6.4E-09 59.6 4.5 50 184-234 37-87 (267)
51 3jwh_A HEN1; methyltransferase 97.3 0.00015 5.1E-09 58.2 3.8 43 192-234 28-71 (217)
52 3orh_A Guanidinoacetate N-meth 97.3 7.7E-05 2.6E-09 61.2 2.1 42 192-234 59-101 (236)
53 1jsx_A Glucose-inhibited divis 97.3 6.1E-05 2.1E-09 60.0 1.4 41 194-234 66-107 (207)
54 3mb5_A SAM-dependent methyltra 97.3 9.6E-05 3.3E-09 60.9 2.4 52 182-234 83-136 (255)
55 2yxd_A Probable cobalt-precorr 97.3 0.00026 9E-09 54.6 4.7 49 183-234 26-75 (183)
56 3g89_A Ribosomal RNA small sub 97.2 0.00018 6.2E-09 59.7 3.8 43 192-234 79-122 (249)
57 1fbn_A MJ fibrillarin homologu 97.2 0.00053 1.8E-08 55.7 6.5 51 191-241 72-127 (230)
58 3jwg_A HEN1, methyltransferase 97.2 0.00017 6E-09 57.8 3.5 43 192-234 28-71 (219)
59 1pjz_A Thiopurine S-methyltran 97.2 0.0003 1E-08 56.2 4.6 48 184-234 14-62 (203)
60 3bkw_A MLL3908 protein, S-aden 97.2 0.00042 1.4E-08 56.2 5.4 50 183-234 34-84 (243)
61 3cgg_A SAM-dependent methyltra 97.2 0.0003 1E-08 54.8 4.3 54 183-240 38-93 (195)
62 1nkv_A Hypothetical protein YJ 97.2 0.00039 1.3E-08 57.0 5.2 51 182-234 26-77 (256)
63 1xdz_A Methyltransferase GIDB; 97.2 0.00019 6.6E-09 58.8 3.3 44 191-234 68-112 (240)
64 3hem_A Cyclopropane-fatty-acyl 97.1 0.00032 1.1E-08 59.4 4.4 51 182-234 62-113 (302)
65 2pwy_A TRNA (adenine-N(1)-)-me 97.1 0.00018 6.1E-09 59.2 2.6 51 183-234 87-139 (258)
66 2b3t_A Protein methyltransfera 97.1 0.00059 2E-08 57.1 5.9 50 183-234 101-151 (276)
67 3gu3_A Methyltransferase; alph 97.1 0.00035 1.2E-08 58.7 4.4 51 184-234 13-65 (284)
68 3mti_A RRNA methylase; SAM-dep 97.1 0.00033 1.1E-08 54.7 4.0 42 191-234 20-62 (185)
69 3f4k_A Putative methyltransfer 97.1 0.00055 1.9E-08 56.2 5.4 51 183-234 36-87 (257)
70 1xxl_A YCGJ protein; structura 97.1 0.00037 1.3E-08 56.9 4.3 50 182-234 11-61 (239)
71 3ccf_A Cyclopropane-fatty-acyl 97.1 0.00047 1.6E-08 57.6 4.9 55 183-240 48-104 (279)
72 2o57_A Putative sarcosine dime 97.1 0.00025 8.6E-09 59.7 3.1 51 182-234 68-123 (297)
73 4dcm_A Ribosomal RNA large sub 97.1 0.00048 1.6E-08 60.6 5.0 51 183-234 213-264 (375)
74 3adn_A Spermidine synthase; am 97.1 0.00023 7.9E-09 60.6 2.8 43 192-234 82-125 (294)
75 2esr_A Methyltransferase; stru 97.1 0.00063 2.2E-08 52.6 5.1 42 192-234 30-72 (177)
76 3bkx_A SAM-dependent methyltra 97.1 0.00029 1E-08 58.5 3.3 44 183-227 34-78 (275)
77 1kpg_A CFA synthase;, cyclopro 97.1 0.00044 1.5E-08 57.9 4.4 51 182-234 54-105 (287)
78 3i9f_A Putative type 11 methyl 97.1 0.00016 5.4E-09 55.7 1.5 54 185-241 10-65 (170)
79 3njr_A Precorrin-6Y methylase; 97.1 0.00055 1.9E-08 54.8 4.7 48 184-234 47-95 (204)
80 1xtp_A LMAJ004091AAA; SGPP, st 97.0 0.00019 6.5E-09 58.8 1.9 51 182-234 83-134 (254)
81 1nt2_A Fibrillarin-like PRE-rR 97.0 0.00056 1.9E-08 55.1 4.6 50 191-240 55-109 (210)
82 3e8s_A Putative SAM dependent 97.0 0.00037 1.3E-08 55.7 3.5 54 183-239 43-97 (227)
83 3bus_A REBM, methyltransferase 97.0 0.00083 2.8E-08 55.6 5.7 50 182-233 51-101 (273)
84 3eey_A Putative rRNA methylase 97.0 0.00026 9E-09 55.8 2.5 44 191-234 20-65 (197)
85 3cc8_A Putative methyltransfer 97.0 0.00042 1.4E-08 55.5 3.7 49 182-234 23-72 (230)
86 2avd_A Catechol-O-methyltransf 97.0 0.00027 9.3E-09 57.1 2.6 43 192-234 68-112 (229)
87 1m6y_A S-adenosyl-methyltransf 97.0 0.00056 1.9E-08 58.4 4.7 52 182-234 16-68 (301)
88 2heo_A Z-DNA binding protein 1 97.0 0.00041 1.4E-08 45.6 2.9 55 35-101 12-66 (67)
89 2fk8_A Methoxy mycolic acid sy 97.0 0.00052 1.8E-08 58.4 4.4 51 182-234 80-131 (318)
90 3b3j_A Histone-arginine methyl 97.0 0.00053 1.8E-08 62.4 4.6 51 182-234 148-198 (480)
91 3fzg_A 16S rRNA methylase; met 97.0 0.00038 1.3E-08 55.6 3.2 43 192-234 48-91 (200)
92 2ipx_A RRNA 2'-O-methyltransfe 97.0 0.00033 1.1E-08 57.0 2.9 51 191-241 75-131 (233)
93 2gpy_A O-methyltransferase; st 97.0 0.00046 1.6E-08 56.1 3.7 42 193-234 54-96 (233)
94 3ggd_A SAM-dependent methyltra 97.0 0.00084 2.9E-08 54.7 5.3 49 191-241 54-106 (245)
95 3fpf_A Mtnas, putative unchara 97.0 0.00056 1.9E-08 58.3 4.3 44 191-234 120-164 (298)
96 2nyu_A Putative ribosomal RNA 97.0 0.0012 3.9E-08 51.8 5.9 45 183-227 12-65 (196)
97 2ozv_A Hypothetical protein AT 97.0 0.00061 2.1E-08 56.7 4.4 44 191-234 34-78 (260)
98 3kr9_A SAM-dependent methyltra 97.0 0.00036 1.2E-08 57.1 2.8 43 192-234 14-57 (225)
99 1xmk_A Double-stranded RNA-spe 97.0 0.00052 1.8E-08 46.6 3.2 61 34-105 12-73 (79)
100 2bm8_A Cephalosporin hydroxyla 97.0 0.00072 2.5E-08 55.5 4.6 48 194-241 82-135 (236)
101 1i9g_A Hypothetical protein RV 96.9 0.00086 2.9E-08 55.9 5.2 52 182-234 89-142 (280)
102 4htf_A S-adenosylmethionine-de 96.9 0.00047 1.6E-08 57.7 3.5 48 183-234 60-108 (285)
103 3hnr_A Probable methyltransfer 96.9 0.00061 2.1E-08 54.5 3.9 49 183-234 36-85 (220)
104 1nv8_A HEMK protein; class I a 96.9 0.0005 1.7E-08 58.1 3.5 41 193-234 123-164 (284)
105 1iy9_A Spermidine synthase; ro 96.9 0.00034 1.2E-08 58.9 2.4 42 193-234 75-117 (275)
106 3pfg_A N-methyltransferase; N, 96.9 0.0012 4.2E-08 54.4 5.8 48 192-241 49-98 (263)
107 2yqz_A Hypothetical protein TT 96.9 0.00098 3.3E-08 54.7 5.1 41 191-233 37-78 (263)
108 1qbj_A Protein (double-strande 96.9 0.0011 3.8E-08 45.2 4.5 68 34-109 11-78 (81)
109 3ftd_A Dimethyladenosine trans 96.9 0.0012 4.2E-08 54.7 5.7 52 182-235 21-73 (249)
110 3ntv_A MW1564 protein; rossman 96.9 0.00046 1.6E-08 56.3 2.9 43 192-234 70-113 (232)
111 3gnl_A Uncharacterized protein 96.9 0.00038 1.3E-08 57.7 2.4 43 192-234 20-63 (244)
112 3tfw_A Putative O-methyltransf 96.9 0.00052 1.8E-08 56.6 3.2 43 192-234 62-106 (248)
113 2pjd_A Ribosomal RNA small sub 96.9 0.00051 1.7E-08 59.5 3.3 52 182-234 186-238 (343)
114 1y0u_A Arsenical resistance op 96.9 0.0011 3.6E-08 46.5 4.4 62 28-105 26-87 (96)
115 1qam_A ERMC' methyltransferase 96.9 0.0013 4.5E-08 54.2 5.6 50 182-234 20-70 (244)
116 3q87_B N6 adenine specific DNA 96.9 0.0011 3.7E-08 51.4 4.7 36 193-231 23-59 (170)
117 3iv6_A Putative Zn-dependent a 96.9 0.00078 2.7E-08 56.3 4.1 50 182-234 35-85 (261)
118 3lec_A NADB-rossmann superfami 96.8 0.00044 1.5E-08 56.7 2.4 43 192-234 20-63 (230)
119 2p7i_A Hypothetical protein; p 96.8 0.00066 2.3E-08 55.0 3.4 40 193-234 42-82 (250)
120 4fsd_A Arsenic methyltransfera 96.8 0.00071 2.4E-08 59.5 3.7 42 193-234 83-126 (383)
121 3dou_A Ribosomal RNA large sub 96.8 0.0014 4.9E-08 51.9 5.2 44 182-227 14-57 (191)
122 2h00_A Methyltransferase 10 do 96.8 0.00049 1.7E-08 56.6 2.5 42 193-234 65-107 (254)
123 2fhp_A Methylase, putative; al 96.8 0.0016 5.4E-08 50.5 5.3 43 191-234 42-85 (187)
124 1o54_A SAM-dependent O-methylt 96.8 0.0015 5.3E-08 54.5 5.6 52 182-234 102-155 (277)
125 2yxe_A Protein-L-isoaspartate 96.8 0.0011 3.8E-08 52.9 4.5 51 183-234 68-120 (215)
126 1g8a_A Fibrillarin-like PRE-rR 96.8 0.0013 4.3E-08 53.1 4.9 51 191-241 71-127 (227)
127 3bxo_A N,N-dimethyltransferase 96.8 0.00079 2.7E-08 54.4 3.5 48 192-241 39-88 (239)
128 3bwc_A Spermidine synthase; SA 96.8 0.00059 2E-08 58.2 2.9 43 192-234 94-137 (304)
129 3lbf_A Protein-L-isoaspartate 96.8 0.002 6.7E-08 51.2 5.8 49 183-234 68-117 (210)
130 1u2z_A Histone-lysine N-methyl 96.8 0.0015 5E-08 58.6 5.5 49 183-232 233-282 (433)
131 3uwp_A Histone-lysine N-methyl 96.8 0.0016 5.5E-08 58.0 5.7 51 182-233 163-214 (438)
132 3b73_A PHIH1 repressor-like pr 96.8 0.0011 3.8E-08 48.1 3.8 63 35-110 15-79 (111)
133 3g2m_A PCZA361.24; SAM-depende 96.8 0.0007 2.4E-08 57.1 3.2 50 181-234 72-122 (299)
134 3duw_A OMT, O-methyltransferas 96.8 0.00071 2.4E-08 54.4 3.1 43 192-234 57-101 (223)
135 2xvm_A Tellurite resistance pr 96.8 0.0015 5.2E-08 51.1 5.0 49 183-234 23-72 (199)
136 3h2b_A SAM-dependent methyltra 96.8 0.00082 2.8E-08 53.1 3.4 46 194-241 42-89 (203)
137 1o9g_A RRNA methyltransferase; 96.7 0.00088 3E-08 55.1 3.6 50 184-234 43-95 (250)
138 1dus_A MJ0882; hypothetical pr 96.7 0.0014 4.9E-08 50.8 4.7 49 183-234 43-92 (194)
139 3m33_A Uncharacterized protein 96.7 0.00093 3.2E-08 54.0 3.7 48 192-241 47-96 (226)
140 1xj5_A Spermidine synthase 1; 96.7 0.00059 2E-08 59.1 2.6 43 192-234 119-162 (334)
141 1p91_A Ribosomal RNA large sub 96.7 0.00085 2.9E-08 55.6 3.5 43 192-234 84-127 (269)
142 3e23_A Uncharacterized protein 96.7 0.00081 2.8E-08 53.5 3.2 42 191-234 41-83 (211)
143 2fyt_A Protein arginine N-meth 96.7 0.0013 4.6E-08 56.9 4.6 50 183-234 55-104 (340)
144 3tr6_A O-methyltransferase; ce 96.7 0.00083 2.8E-08 54.0 3.1 42 193-234 64-107 (225)
145 3c3p_A Methyltransferase; NP_9 96.7 0.0008 2.7E-08 53.7 3.0 42 193-234 56-99 (210)
146 2pt6_A Spermidine synthase; tr 96.7 0.00061 2.1E-08 58.7 2.4 42 193-234 116-158 (321)
147 3uzu_A Ribosomal RNA small sub 96.7 0.00064 2.2E-08 57.4 2.4 51 183-234 33-86 (279)
148 2i7c_A Spermidine synthase; tr 96.7 0.00064 2.2E-08 57.4 2.4 43 192-234 77-120 (283)
149 3l8d_A Methyltransferase; stru 96.7 0.0027 9.2E-08 51.4 6.0 48 192-241 52-103 (242)
150 1inl_A Spermidine synthase; be 96.7 0.00065 2.2E-08 57.8 2.4 42 193-234 90-132 (296)
151 2pxx_A Uncharacterized protein 96.7 0.0008 2.7E-08 53.3 2.8 42 192-234 41-83 (215)
152 1uir_A Polyamine aminopropyltr 96.7 0.00068 2.3E-08 58.1 2.4 43 192-234 76-119 (314)
153 3mq0_A Transcriptional repress 96.7 0.0012 4.1E-08 55.5 3.9 58 36-105 33-90 (275)
154 2o07_A Spermidine synthase; st 96.7 0.0007 2.4E-08 57.9 2.4 43 192-234 94-137 (304)
155 1wzn_A SAM-dependent methyltra 96.6 0.004 1.4E-07 50.7 7.0 49 183-234 32-81 (252)
156 2b2c_A Spermidine synthase; be 96.6 0.00076 2.6E-08 57.9 2.6 43 192-234 107-150 (314)
157 2cmg_A Spermidine synthase; tr 96.6 0.0014 4.8E-08 54.8 4.1 41 192-234 71-112 (262)
158 1mjf_A Spermidine synthase; sp 96.6 0.00072 2.5E-08 57.0 2.2 40 193-233 75-115 (281)
159 1ws6_A Methyltransferase; stru 96.6 0.0012 4E-08 50.4 3.3 40 193-234 41-81 (171)
160 1dl5_A Protein-L-isoaspartate 96.6 0.0018 6.2E-08 55.3 4.8 51 183-234 66-118 (317)
161 1yub_A Ermam, rRNA methyltrans 96.6 0.0013 4.4E-08 54.1 3.6 50 182-234 19-69 (245)
162 2y1w_A Histone-arginine methyl 96.6 0.0011 3.7E-08 57.6 3.2 49 183-233 41-89 (348)
163 3lpm_A Putative methyltransfer 96.6 0.0018 6E-08 53.6 4.4 43 191-234 46-90 (259)
164 3thr_A Glycine N-methyltransfe 96.6 0.0016 5.4E-08 54.5 4.1 40 192-233 56-96 (293)
165 3tma_A Methyltransferase; thum 96.6 0.0016 5.5E-08 56.5 4.3 52 182-234 193-246 (354)
166 3u81_A Catechol O-methyltransf 96.6 0.0013 4.6E-08 52.9 3.5 43 192-234 57-101 (221)
167 2hnk_A SAM-dependent O-methylt 96.6 0.0021 7.2E-08 52.4 4.7 43 192-234 59-103 (239)
168 2nxc_A L11 mtase, ribosomal pr 96.5 0.0016 5.5E-08 53.9 3.9 41 192-234 119-160 (254)
169 1qgp_A Protein (double strande 96.5 0.0016 5.4E-08 44.0 3.1 61 34-102 15-75 (77)
170 1l3i_A Precorrin-6Y methyltran 96.5 0.0027 9.3E-08 49.1 4.9 48 184-234 25-73 (192)
171 1ne2_A Hypothetical protein TA 96.5 0.0017 6E-08 51.2 3.7 48 192-240 50-99 (200)
172 1sui_A Caffeoyl-COA O-methyltr 96.5 0.0015 5E-08 54.0 3.3 43 192-234 78-122 (247)
173 3d2l_A SAM-dependent methyltra 96.5 0.0026 9E-08 51.4 4.8 39 193-234 33-72 (243)
174 3p9n_A Possible methyltransfer 96.5 0.0023 7.8E-08 50.1 4.2 41 193-234 44-85 (189)
175 1zx0_A Guanidinoacetate N-meth 96.5 0.0012 4.1E-08 53.7 2.6 42 192-234 59-101 (236)
176 3gru_A Dimethyladenosine trans 96.5 0.0036 1.2E-07 53.2 5.6 57 182-241 40-101 (295)
177 1ej0_A FTSJ; methyltransferase 96.5 0.0043 1.5E-07 47.0 5.7 45 183-227 12-57 (180)
178 3a27_A TYW2, uncharacterized p 96.5 0.0017 5.7E-08 54.4 3.5 44 191-234 117-161 (272)
179 3ofk_A Nodulation protein S; N 96.5 0.002 6.7E-08 51.4 3.8 42 191-234 49-91 (216)
180 4e2x_A TCAB9; kijanose, tetron 96.4 0.0017 5.7E-08 57.5 3.5 52 181-235 96-148 (416)
181 2b25_A Hypothetical protein; s 96.4 0.0028 9.5E-08 54.5 4.8 51 183-234 96-148 (336)
182 2ift_A Putative methylase HI07 96.4 0.0016 5.6E-08 51.7 3.1 40 194-234 54-94 (201)
183 3r3h_A O-methyltransferase, SA 96.4 0.0012 4E-08 54.4 2.2 43 192-234 59-103 (242)
184 3bgv_A MRNA CAP guanine-N7 met 96.4 0.0028 9.5E-08 53.8 4.7 64 166-233 9-74 (313)
185 3ocj_A Putative exported prote 96.4 0.00096 3.3E-08 56.6 1.7 44 191-234 116-161 (305)
186 3pqk_A Biofilm growth-associat 96.4 0.0038 1.3E-07 44.0 4.5 50 29-89 19-68 (102)
187 3tqs_A Ribosomal RNA small sub 96.4 0.0018 6E-08 54.0 3.1 50 182-234 19-69 (255)
188 1qyr_A KSGA, high level kasuga 96.4 0.003 1E-07 52.5 4.4 50 182-234 11-61 (252)
189 3grz_A L11 mtase, ribosomal pr 96.4 0.0023 7.9E-08 50.6 3.6 42 192-234 59-101 (205)
190 1vbf_A 231AA long hypothetical 96.4 0.0047 1.6E-07 49.7 5.5 49 183-234 61-110 (231)
191 3c3y_A Pfomt, O-methyltransfer 96.4 0.0022 7.4E-08 52.5 3.5 43 192-234 69-113 (237)
192 4df3_A Fibrillarin-like rRNA/T 96.3 0.0021 7.4E-08 52.7 3.2 51 191-241 75-131 (233)
193 3sm3_A SAM-dependent methyltra 96.3 0.0029 9.9E-08 50.7 3.8 41 192-234 29-70 (235)
194 3cuo_A Uncharacterized HTH-typ 96.3 0.003 1E-07 43.9 3.4 48 33-90 24-71 (99)
195 3dr5_A Putative O-methyltransf 96.3 0.0022 7.6E-08 52.0 3.1 40 195-234 58-99 (221)
196 3jth_A Transcription activator 96.3 0.0026 8.7E-08 44.6 3.0 63 29-102 19-81 (98)
197 2aot_A HMT, histamine N-methyl 96.2 0.0036 1.2E-07 52.6 4.4 41 193-233 52-99 (292)
198 3f6o_A Probable transcriptiona 96.2 0.0033 1.1E-07 45.8 3.6 65 28-103 13-77 (118)
199 2ex4_A Adrenal gland protein A 96.2 0.002 6.7E-08 52.5 2.6 41 193-234 79-120 (241)
200 1u2w_A CADC repressor, cadmium 96.2 0.0046 1.6E-07 45.3 4.3 53 27-89 36-88 (122)
201 3cbg_A O-methyltransferase; cy 96.2 0.0031 1.1E-07 51.3 3.7 42 193-234 72-115 (232)
202 3q7e_A Protein arginine N-meth 96.2 0.0019 6.6E-08 56.1 2.5 41 193-234 66-106 (349)
203 3m70_A Tellurite resistance pr 96.2 0.003 1E-07 52.7 3.6 49 183-234 111-160 (286)
204 2xrn_A HTH-type transcriptiona 96.2 0.003 1E-07 52.0 3.5 59 36-105 9-67 (241)
205 2pbf_A Protein-L-isoaspartate 96.2 0.006 2.1E-07 49.0 5.2 44 191-234 78-127 (227)
206 2yvl_A TRMI protein, hypotheti 96.2 0.0079 2.7E-07 48.8 6.0 49 183-234 82-131 (248)
207 1zq9_A Probable dimethyladenos 96.2 0.0047 1.6E-07 52.0 4.7 49 182-233 18-67 (285)
208 3fut_A Dimethyladenosine trans 96.1 0.0042 1.4E-07 52.1 4.0 49 182-234 37-86 (271)
209 2oqg_A Possible transcriptiona 96.1 0.0055 1.9E-07 43.9 4.1 59 34-103 22-80 (114)
210 1mkm_A ICLR transcriptional re 96.1 0.0064 2.2E-07 50.2 5.0 57 36-104 11-67 (249)
211 3lcc_A Putative methyl chlorid 96.1 0.0028 9.5E-08 51.3 2.8 38 195-234 68-106 (235)
212 2ih2_A Modification methylase 96.1 0.0079 2.7E-07 53.0 5.9 48 184-232 31-80 (421)
213 3r4k_A Transcriptional regulat 96.1 0.0017 5.8E-08 54.1 1.4 59 36-105 9-67 (260)
214 3hp7_A Hemolysin, putative; st 96.1 0.0072 2.5E-07 51.2 5.3 47 183-231 75-123 (291)
215 3opn_A Putative hemolysin; str 96.0 0.011 3.7E-07 48.3 6.1 48 183-232 27-76 (232)
216 2y75_A HTH-type transcriptiona 96.0 0.0082 2.8E-07 44.2 4.8 45 49-102 25-70 (129)
217 2gb4_A Thiopurine S-methyltran 96.0 0.0047 1.6E-07 51.1 3.8 40 192-233 67-107 (252)
218 3evz_A Methyltransferase; NYSG 96.0 0.0045 1.5E-07 49.8 3.6 43 191-234 53-97 (230)
219 1ixk_A Methyltransferase; open 95.9 0.0086 2.9E-07 51.2 5.3 49 185-234 111-161 (315)
220 3htx_A HEN1; HEN1, small RNA m 95.9 0.0033 1.1E-07 60.5 2.8 43 192-234 720-764 (950)
221 1y8c_A S-adenosylmethionine-de 95.9 0.0061 2.1E-07 49.1 4.2 40 193-234 37-77 (246)
222 1r1u_A CZRA, repressor protein 95.9 0.0057 2E-07 43.5 3.5 50 30-90 23-72 (106)
223 1wy7_A Hypothetical protein PH 95.9 0.0054 1.9E-07 48.4 3.7 42 192-234 48-90 (207)
224 1ub9_A Hypothetical protein PH 95.9 0.0049 1.7E-07 42.9 3.1 67 28-104 11-80 (100)
225 1i1n_A Protein-L-isoaspartate 95.9 0.0053 1.8E-07 49.3 3.6 42 192-233 76-119 (226)
226 2fpo_A Methylase YHHF; structu 95.9 0.0052 1.8E-07 48.8 3.5 40 194-234 55-95 (202)
227 2qfm_A Spermine synthase; sper 95.9 0.0039 1.3E-07 54.5 2.9 42 192-234 187-229 (364)
228 2frn_A Hypothetical protein PH 95.9 0.0036 1.2E-07 52.5 2.6 42 192-234 124-166 (278)
229 2jsc_A Transcriptional regulat 95.8 0.0053 1.8E-07 44.7 3.1 60 32-102 20-79 (118)
230 2hzt_A Putative HTH-type trans 95.8 0.013 4.5E-07 41.7 5.1 52 49-107 26-81 (107)
231 3gdh_A Trimethylguanosine synt 95.8 0.0055 1.9E-07 49.7 3.4 40 193-234 78-118 (241)
232 3bzb_A Uncharacterized protein 95.8 0.0081 2.8E-07 50.3 4.5 42 192-234 78-121 (281)
233 2kko_A Possible transcriptiona 95.8 0.003 1E-07 45.3 1.6 46 34-90 26-71 (108)
234 3id6_C Fibrillarin-like rRNA/T 95.8 0.0099 3.4E-07 48.7 4.8 51 191-241 74-130 (232)
235 3tm4_A TRNA (guanine N2-)-meth 95.7 0.006 2.1E-07 53.4 3.5 44 191-234 215-259 (373)
236 3ajd_A Putative methyltransfer 95.7 0.0083 2.8E-07 50.1 4.1 44 191-234 81-126 (274)
237 2kw5_A SLR1183 protein; struct 95.7 0.006 2E-07 47.9 3.1 37 196-234 32-69 (202)
238 2htj_A P fimbrial regulatory p 95.7 0.013 4.6E-07 39.4 4.4 43 37-89 4-46 (81)
239 1oyi_A Double-stranded RNA-bin 95.7 0.0091 3.1E-07 40.7 3.4 59 34-104 18-76 (82)
240 2avn_A Ubiquinone/menaquinone 95.7 0.0068 2.3E-07 49.9 3.4 39 193-233 54-93 (260)
241 2h1r_A Dimethyladenosine trans 95.7 0.0068 2.3E-07 51.4 3.5 50 182-234 32-82 (299)
242 4azs_A Methyltransferase WBDD; 95.6 0.0069 2.4E-07 56.1 3.6 41 192-234 65-106 (569)
243 3f6v_A Possible transcriptiona 95.6 0.0083 2.8E-07 45.8 3.5 67 26-103 51-117 (151)
244 1vlm_A SAM-dependent methyltra 95.6 0.0064 2.2E-07 48.6 2.9 35 194-234 48-83 (219)
245 1g6q_1 HnRNP arginine N-methyl 95.6 0.0045 1.6E-07 53.2 2.1 41 193-234 38-78 (328)
246 1tbx_A ORF F-93, hypothetical 95.6 0.008 2.7E-07 42.0 3.0 63 36-108 11-77 (99)
247 1ri5_A MRNA capping enzyme; me 95.6 0.011 3.9E-07 49.1 4.5 42 192-234 63-105 (298)
248 1r18_A Protein-L-isoaspartate( 95.5 0.0073 2.5E-07 48.6 3.2 44 191-234 82-132 (227)
249 2k02_A Ferrous iron transport 95.5 0.013 4.5E-07 40.4 4.0 43 38-90 7-49 (87)
250 1xn7_A Hypothetical protein YH 95.5 0.014 4.9E-07 39.3 4.0 42 38-89 7-48 (78)
251 2wa2_A Non-structural protein 95.5 0.012 4.2E-07 49.4 4.4 39 191-232 80-118 (276)
252 3ech_A MEXR, multidrug resista 95.5 0.02 6.9E-07 42.4 5.2 48 33-90 37-84 (142)
253 1r1t_A Transcriptional repress 95.5 0.012 3.9E-07 43.2 3.7 50 30-90 43-92 (122)
254 2oxt_A Nucleoside-2'-O-methylt 95.4 0.014 4.9E-07 48.6 4.6 36 191-229 72-107 (265)
255 3df8_A Possible HXLR family tr 95.4 0.011 3.8E-07 42.5 3.4 75 13-108 16-93 (111)
256 2o0y_A Transcriptional regulat 95.4 0.007 2.4E-07 50.3 2.6 57 36-104 26-82 (260)
257 2p8j_A S-adenosylmethionine-de 95.3 0.0074 2.5E-07 47.5 2.5 41 192-233 22-63 (209)
258 2g7u_A Transcriptional regulat 95.3 0.0067 2.3E-07 50.3 2.2 60 36-108 17-76 (257)
259 1uwv_A 23S rRNA (uracil-5-)-me 95.3 0.012 4.2E-07 52.5 4.1 49 183-234 277-326 (433)
260 4a5n_A Uncharacterized HTH-typ 95.3 0.031 1.1E-06 41.5 5.7 75 14-108 16-94 (131)
261 2gs9_A Hypothetical protein TT 95.3 0.0096 3.3E-07 47.1 3.0 45 183-234 28-74 (211)
262 3giw_A Protein of unknown func 95.3 0.016 5.4E-07 48.7 4.3 43 192-234 77-123 (277)
263 3t8r_A Staphylococcus aureus C 95.2 0.021 7.2E-07 43.1 4.5 46 49-102 27-72 (143)
264 2qww_A Transcriptional regulat 95.2 0.052 1.8E-06 40.5 6.7 62 35-106 43-109 (154)
265 3lwf_A LIN1550 protein, putati 95.2 0.026 8.7E-07 43.5 5.0 60 49-124 43-102 (159)
266 2vdw_A Vaccinia virus capping 95.1 0.0098 3.4E-07 50.5 2.8 41 193-234 48-89 (302)
267 3o4f_A Spermidine synthase; am 95.1 0.011 3.8E-07 50.1 3.1 43 192-234 82-125 (294)
268 3r0q_C Probable protein argini 95.1 0.013 4.4E-07 51.3 3.6 43 191-234 61-103 (376)
269 2ia2_A Putative transcriptiona 95.1 0.0071 2.4E-07 50.4 1.8 58 36-106 24-81 (265)
270 2jt1_A PEFI protein; solution 95.1 0.015 5.1E-07 39.1 3.0 44 38-90 9-57 (77)
271 3frh_A 16S rRNA methylase; met 95.1 0.017 5.7E-07 47.7 3.8 41 191-234 103-144 (253)
272 2wte_A CSA3; antiviral protein 95.0 0.013 4.5E-07 48.4 3.2 62 35-108 154-215 (244)
273 1z7u_A Hypothetical protein EF 95.0 0.018 6.2E-07 41.3 3.5 59 38-107 27-89 (112)
274 2gxg_A 146AA long hypothetical 95.0 0.11 3.7E-06 38.2 8.0 60 35-105 39-101 (146)
275 2zfu_A Nucleomethylin, cerebra 95.0 0.025 8.5E-07 44.8 4.6 39 183-226 57-95 (215)
276 3f3x_A Transcriptional regulat 95.0 0.038 1.3E-06 40.9 5.3 64 34-108 38-104 (144)
277 1wg8_A Predicted S-adenosylmet 94.9 0.021 7E-07 48.1 4.1 51 181-234 11-62 (285)
278 3lcv_B Sisomicin-gentamicin re 94.8 0.004 1.4E-07 52.1 -0.5 43 192-234 131-174 (281)
279 1ylf_A RRF2 family protein; st 94.8 0.026 8.8E-07 42.8 4.1 63 25-103 12-74 (149)
280 2g72_A Phenylethanolamine N-me 94.8 0.0044 1.5E-07 51.9 -0.2 40 193-233 71-111 (289)
281 3bdd_A Regulatory protein MARR 94.8 0.035 1.2E-06 40.7 4.8 65 34-108 32-99 (142)
282 1on2_A Transcriptional regulat 94.8 0.025 8.6E-07 42.0 3.9 50 49-108 21-70 (142)
283 2nnn_A Probable transcriptiona 94.7 0.023 7.9E-07 41.7 3.5 61 35-105 40-103 (140)
284 2i62_A Nicotinamide N-methyltr 94.7 0.0034 1.2E-07 51.4 -1.3 41 192-233 55-96 (265)
285 3bja_A Transcriptional regulat 94.7 0.022 7.5E-07 41.7 3.4 46 35-90 35-80 (139)
286 2yxl_A PH0851 protein, 450AA l 94.7 0.031 1E-06 50.2 4.9 67 166-233 233-301 (450)
287 4hc4_A Protein arginine N-meth 94.7 0.019 6.4E-07 50.5 3.3 39 195-234 85-123 (376)
288 2fsw_A PG_0823 protein; alpha- 94.6 0.034 1.2E-06 39.5 4.0 75 13-107 14-92 (107)
289 2fu4_A Ferric uptake regulatio 94.6 0.022 7.5E-07 38.4 2.8 48 35-90 19-71 (83)
290 3ldu_A Putative methylase; str 94.6 0.027 9.2E-07 49.6 4.1 52 182-234 185-275 (385)
291 3fm5_A Transcriptional regulat 94.6 0.084 2.9E-06 39.3 6.4 63 35-106 41-106 (150)
292 2nyx_A Probable transcriptiona 94.5 0.069 2.3E-06 40.8 6.0 63 35-107 47-112 (168)
293 1af7_A Chemotaxis receptor met 94.5 0.016 5.4E-07 48.7 2.4 41 194-234 106-155 (274)
294 3bpv_A Transcriptional regulat 94.5 0.023 8E-07 41.6 3.1 61 35-105 31-94 (138)
295 3k0l_A Repressor protein; heli 94.4 0.038 1.3E-06 41.9 4.2 63 35-107 48-113 (162)
296 1jgs_A Multiple antibiotic res 94.4 0.027 9.1E-07 41.3 3.2 63 35-107 36-101 (138)
297 3k0b_A Predicted N6-adenine-sp 94.4 0.033 1.1E-06 49.2 4.2 52 182-234 191-281 (393)
298 3r0a_A Putative transcriptiona 94.3 0.031 1.1E-06 40.9 3.4 47 35-90 28-75 (123)
299 2hr3_A Probable transcriptiona 94.3 0.039 1.3E-06 40.8 4.1 62 34-105 36-101 (147)
300 2igt_A SAM dependent methyltra 94.3 0.023 7.9E-07 48.9 3.1 40 193-234 153-193 (332)
301 2f2e_A PA1607; transcription f 94.3 0.046 1.6E-06 41.2 4.4 52 49-107 36-89 (146)
302 3dmg_A Probable ribosomal RNA 94.3 0.017 5.7E-07 50.8 2.2 40 193-234 233-273 (381)
303 3e6m_A MARR family transcripti 94.3 0.1 3.5E-06 39.4 6.4 62 35-106 55-119 (161)
304 3cdh_A Transcriptional regulat 94.3 0.13 4.6E-06 38.3 7.0 62 35-106 45-109 (155)
305 3g3z_A NMB1585, transcriptiona 94.2 0.03 1E-06 41.5 3.1 64 34-107 32-98 (145)
306 2rdp_A Putative transcriptiona 94.2 0.031 1.1E-06 41.5 3.2 61 35-105 44-107 (150)
307 2r6z_A UPF0341 protein in RSP 94.2 0.031 1.1E-06 46.3 3.5 42 191-234 81-130 (258)
308 1yyv_A Putative transcriptiona 94.2 0.037 1.3E-06 41.0 3.5 76 13-108 24-103 (131)
309 2fbi_A Probable transcriptiona 94.1 0.025 8.6E-07 41.6 2.6 62 34-105 37-101 (142)
310 3k69_A Putative transcription 94.1 0.085 2.9E-06 40.6 5.6 47 49-103 27-73 (162)
311 3nrv_A Putative transcriptiona 94.1 0.027 9.1E-07 41.9 2.7 47 34-90 41-87 (148)
312 3sso_A Methyltransferase; macr 94.0 0.051 1.7E-06 48.2 4.6 47 193-241 216-269 (419)
313 3oop_A LIN2960 protein; protei 93.9 0.022 7.5E-07 42.2 1.9 63 34-106 38-103 (143)
314 2zkz_A Transcriptional repress 93.9 0.053 1.8E-06 37.9 3.8 60 32-102 26-85 (99)
315 2fbh_A Transcriptional regulat 93.9 0.044 1.5E-06 40.4 3.5 45 36-90 40-85 (146)
316 2p41_A Type II methyltransfera 93.9 0.036 1.2E-06 47.1 3.4 32 191-225 80-111 (305)
317 1s3j_A YUSO protein; structura 93.9 0.15 5.1E-06 38.0 6.5 45 36-90 40-84 (155)
318 2a61_A Transcriptional regulat 93.8 0.034 1.2E-06 41.0 2.8 63 34-106 34-99 (145)
319 2eth_A Transcriptional regulat 93.8 0.05 1.7E-06 40.8 3.7 47 34-90 45-91 (154)
320 1lj9_A Transcriptional regulat 93.8 0.033 1.1E-06 41.1 2.7 60 36-105 32-94 (144)
321 1r7j_A Conserved hypothetical 93.8 0.047 1.6E-06 38.1 3.3 47 51-108 21-67 (95)
322 2lkp_A Transcriptional regulat 93.7 0.049 1.7E-06 39.2 3.4 46 33-89 32-77 (119)
323 2f8l_A Hypothetical protein LM 93.7 0.021 7.3E-07 49.2 1.6 43 192-234 129-177 (344)
324 1sqg_A SUN protein, FMU protei 93.6 0.027 9.2E-07 50.2 2.2 48 185-233 239-287 (429)
325 3ldg_A Putative uncharacterize 93.6 0.055 1.9E-06 47.6 4.2 52 182-234 184-274 (384)
326 1xd7_A YWNA; structural genomi 93.5 0.064 2.2E-06 40.3 3.9 42 52-102 25-66 (145)
327 2dul_A N(2),N(2)-dimethylguano 93.4 0.045 1.5E-06 48.0 3.3 41 194-234 48-89 (378)
328 2fa5_A Transcriptional regulat 93.4 0.045 1.5E-06 41.3 2.9 45 35-89 51-95 (162)
329 1z91_A Organic hydroperoxide r 93.4 0.036 1.2E-06 41.1 2.3 66 34-109 41-109 (147)
330 3kp7_A Transcriptional regulat 93.4 0.19 6.5E-06 37.3 6.4 43 36-89 41-83 (151)
331 3cjn_A Transcriptional regulat 93.4 0.045 1.5E-06 41.4 2.8 47 34-90 53-99 (162)
332 3eco_A MEPR; mutlidrug efflux 93.3 0.043 1.5E-06 40.3 2.6 65 35-107 33-100 (139)
333 3s2w_A Transcriptional regulat 93.3 0.041 1.4E-06 41.5 2.4 61 36-106 53-116 (159)
334 3hsr_A HTH-type transcriptiona 93.2 0.024 8.2E-07 41.9 1.1 62 36-107 39-103 (140)
335 2bv6_A MGRA, HTH-type transcri 93.2 0.055 1.9E-06 39.8 3.1 62 34-105 38-102 (142)
336 2a14_A Indolethylamine N-methy 93.2 0.012 4E-07 48.7 -0.8 41 192-233 54-95 (263)
337 3deu_A Transcriptional regulat 93.1 0.051 1.8E-06 41.5 2.9 63 35-106 55-120 (166)
338 2oyr_A UPF0341 protein YHIQ; a 93.1 0.084 2.9E-06 43.8 4.3 42 183-227 77-120 (258)
339 1sfx_A Conserved hypothetical 93.1 0.063 2.1E-06 37.4 3.1 46 35-90 22-67 (109)
340 3bro_A Transcriptional regulat 93.1 0.084 2.9E-06 38.6 3.9 63 35-105 36-101 (141)
341 3bj6_A Transcriptional regulat 93.1 0.046 1.6E-06 40.7 2.5 46 35-90 42-87 (152)
342 3tgn_A ADC operon repressor AD 93.0 0.066 2.3E-06 39.5 3.2 45 34-89 39-83 (146)
343 1q1h_A TFE, transcription fact 92.9 0.11 3.6E-06 36.9 4.1 46 35-89 20-65 (110)
344 4hbl_A Transcriptional regulat 92.9 0.038 1.3E-06 41.3 1.7 47 34-90 42-88 (149)
345 2pex_A Transcriptional regulat 92.9 0.067 2.3E-06 39.9 3.1 65 35-109 49-116 (153)
346 3bt7_A TRNA (uracil-5-)-methyl 92.8 0.12 4E-06 45.0 5.0 38 195-234 215-253 (369)
347 2x4h_A Hypothetical protein SS 92.8 0.079 2.7E-06 39.0 3.4 48 49-107 30-77 (139)
348 3k6r_A Putative transferase PH 92.8 0.043 1.5E-06 46.1 2.1 43 191-234 123-166 (278)
349 1wxx_A TT1595, hypothetical pr 92.8 0.054 1.9E-06 47.4 2.8 40 193-234 209-249 (382)
350 3boq_A Transcriptional regulat 92.7 0.047 1.6E-06 41.1 2.1 46 35-89 49-94 (160)
351 1p6r_A Penicillinase repressor 92.7 0.064 2.2E-06 35.9 2.5 46 35-90 11-60 (82)
352 3tka_A Ribosomal RNA small sub 92.7 0.24 8E-06 42.7 6.6 60 181-241 46-109 (347)
353 2lnb_A Z-DNA-binding protein 1 92.6 0.11 3.7E-06 34.6 3.4 55 35-101 21-75 (80)
354 4aik_A Transcriptional regulat 92.5 0.13 4.5E-06 38.7 4.4 62 37-107 35-99 (151)
355 3m6w_A RRNA methylase; rRNA me 92.3 0.081 2.8E-06 47.7 3.4 44 191-234 99-144 (464)
356 2p4w_A Transcriptional regulat 92.2 0.13 4.6E-06 40.9 4.3 66 28-104 10-80 (202)
357 2frh_A SARA, staphylococcal ac 92.2 0.078 2.7E-06 38.6 2.7 63 36-106 40-105 (127)
358 4dmg_A Putative uncharacterize 92.1 0.065 2.2E-06 47.2 2.5 40 193-234 214-254 (393)
359 2okc_A Type I restriction enzy 92.1 0.068 2.3E-06 47.7 2.7 50 183-233 162-225 (445)
360 3ll7_A Putative methyltransfer 92.1 0.08 2.7E-06 46.9 3.1 39 194-234 94-133 (410)
361 2as0_A Hypothetical protein PH 92.1 0.079 2.7E-06 46.5 3.0 41 193-234 217-258 (396)
362 2yx1_A Hypothetical protein MJ 92.1 0.063 2.1E-06 46.2 2.2 40 192-234 194-234 (336)
363 2k4b_A Transcriptional regulat 92.0 0.098 3.3E-06 36.8 2.9 50 35-90 37-86 (99)
364 3c6k_A Spermine synthase; sper 91.9 0.082 2.8E-06 46.3 2.8 41 193-234 205-246 (381)
365 2jjq_A Uncharacterized RNA met 91.8 0.11 3.9E-06 46.2 3.7 41 192-234 289-330 (425)
366 3c0k_A UPF0064 protein YCCW; P 91.7 0.082 2.8E-06 46.4 2.7 41 193-234 220-261 (396)
367 2pn6_A ST1022, 150AA long hypo 91.6 0.14 4.7E-06 38.4 3.5 46 34-89 4-49 (150)
368 2h09_A Transcriptional regulat 91.6 0.095 3.2E-06 39.4 2.6 56 39-107 46-101 (155)
369 2b78_A Hypothetical protein SM 91.6 0.083 2.9E-06 46.3 2.5 42 192-234 211-253 (385)
370 2cfx_A HTH-type transcriptiona 91.6 0.15 5.1E-06 38.0 3.6 45 35-89 7-51 (144)
371 2qvo_A Uncharacterized protein 91.6 0.11 3.9E-06 35.8 2.7 51 50-108 30-81 (95)
372 2vn2_A DNAD, chromosome replic 91.5 0.16 5.6E-06 37.2 3.8 33 50-89 51-83 (128)
373 1sfu_A 34L protein; protein/Z- 91.5 0.47 1.6E-05 31.4 5.5 52 39-101 21-72 (75)
374 3m4x_A NOL1/NOP2/SUN family pr 91.4 0.14 4.9E-06 46.0 3.9 44 191-234 103-148 (456)
375 1bja_A Transcription regulator 91.4 0.19 6.6E-06 35.0 3.7 60 35-108 18-78 (95)
376 2w25_A Probable transcriptiona 91.3 0.16 5.5E-06 38.1 3.6 45 35-89 9-53 (150)
377 3gcz_A Polyprotein; flavivirus 91.1 0.2 6.7E-06 42.0 4.2 44 181-225 79-122 (282)
378 2p5v_A Transcriptional regulat 91.1 0.17 5.9E-06 38.5 3.6 45 35-89 12-56 (162)
379 3nqo_A MARR-family transcripti 91.0 0.15 5E-06 39.9 3.2 68 33-108 41-111 (189)
380 3u2r_A Regulatory protein MARR 90.9 0.1 3.5E-06 39.7 2.2 65 35-107 48-115 (168)
381 3b5i_A S-adenosyl-L-methionine 90.6 0.2 6.8E-06 43.9 4.0 34 194-227 53-101 (374)
382 2dbb_A Putative HTH-type trans 90.6 0.2 6.7E-06 37.6 3.5 46 34-89 10-55 (151)
383 2v79_A DNA replication protein 90.6 0.2 6.8E-06 37.3 3.4 35 49-90 50-84 (135)
384 3i4p_A Transcriptional regulat 90.6 0.2 6.8E-06 38.2 3.5 45 34-88 4-48 (162)
385 3jw4_A Transcriptional regulat 90.5 0.87 3E-05 33.4 7.1 47 36-90 44-90 (148)
386 3v97_A Ribosomal RNA large sub 90.5 0.2 6.9E-06 47.5 4.3 52 182-234 180-274 (703)
387 2frx_A Hypothetical protein YE 90.5 0.31 1.1E-05 44.0 5.3 42 193-234 117-160 (479)
388 2b9e_A NOL1/NOP2/SUN domain fa 90.4 0.25 8.4E-06 42.0 4.3 44 191-234 100-145 (309)
389 2cyy_A Putative HTH-type trans 90.3 0.18 6.1E-06 37.9 3.0 45 35-89 9-53 (151)
390 2fbk_A Transcriptional regulat 90.3 0.075 2.6E-06 41.1 0.9 48 35-89 71-118 (181)
391 2ia0_A Putative HTH-type trans 90.2 0.23 7.7E-06 38.4 3.6 46 34-89 18-63 (171)
392 2e1c_A Putative HTH-type trans 90.2 0.24 8.1E-06 38.3 3.7 46 34-89 28-73 (171)
393 1rjd_A PPM1P, carboxy methyl t 90.2 0.31 1.1E-05 41.9 4.8 40 193-232 97-136 (334)
394 2cg4_A Regulatory protein ASNC 90.0 0.19 6.4E-06 37.8 2.9 45 35-89 10-54 (152)
395 2fxa_A Protease production reg 89.8 0.12 4E-06 41.2 1.7 63 35-107 50-115 (207)
396 2qlz_A Transcription factor PF 89.8 0.1 3.5E-06 42.6 1.4 67 28-105 7-79 (232)
397 1uly_A Hypothetical protein PH 89.7 0.29 1E-05 38.6 4.0 51 29-90 16-66 (192)
398 1i1g_A Transcriptional regulat 89.7 0.21 7.3E-06 36.8 3.0 45 35-89 6-50 (141)
399 1ku9_A Hypothetical protein MJ 89.7 0.24 8.2E-06 36.4 3.3 44 38-90 31-74 (152)
400 4auk_A Ribosomal RNA large sub 89.7 0.23 7.8E-06 43.4 3.5 49 191-241 209-257 (375)
401 4b8x_A SCO5413, possible MARR- 89.6 0.11 3.8E-06 38.8 1.3 50 49-105 50-102 (147)
402 2pg4_A Uncharacterized protein 89.5 0.14 4.9E-06 35.1 1.8 61 38-107 20-82 (95)
403 3hrs_A Metalloregulator SCAR; 89.4 0.26 9E-06 39.4 3.5 50 49-108 19-68 (214)
404 2o03_A Probable zinc uptake re 89.4 0.46 1.6E-05 34.8 4.6 50 32-90 10-64 (131)
405 3ua3_A Protein arginine N-meth 89.4 0.38 1.3E-05 45.5 5.0 50 155-211 378-427 (745)
406 2k4m_A TR8_protein, UPF0146 pr 89.3 0.25 8.6E-06 37.4 3.1 38 192-230 34-73 (153)
407 2d1h_A ST1889, 109AA long hypo 89.3 0.28 9.7E-06 33.9 3.2 35 49-90 35-69 (109)
408 3evf_A RNA-directed RNA polyme 89.1 0.36 1.2E-05 40.3 4.2 37 183-220 65-101 (277)
409 3u1d_A Uncharacterized protein 89.0 0.51 1.7E-05 35.8 4.6 64 34-105 30-102 (151)
410 2fe3_A Peroxide operon regulat 89.0 0.69 2.3E-05 34.5 5.4 48 34-90 23-75 (145)
411 2zig_A TTHA0409, putative modi 88.9 0.34 1.2E-05 40.7 4.0 49 182-234 226-275 (297)
412 2esh_A Conserved hypothetical 88.9 0.74 2.5E-05 33.0 5.3 67 30-107 10-89 (118)
413 2efj_A 3,7-dimethylxanthine me 87.8 0.33 1.1E-05 42.6 3.3 33 194-226 53-102 (384)
414 1cf7_A Protein (transcription 87.6 0.53 1.8E-05 31.3 3.5 34 49-89 29-63 (76)
415 2dk5_A DNA-directed RNA polyme 87.5 0.38 1.3E-05 33.2 2.8 46 36-89 23-68 (91)
416 4gqb_A Protein arginine N-meth 87.5 0.55 1.9E-05 43.9 4.8 71 155-232 323-400 (637)
417 4esf_A PADR-like transcription 87.4 0.93 3.2E-05 32.6 5.0 67 29-106 7-84 (117)
418 1okr_A MECI, methicillin resis 86.3 0.21 7.3E-06 35.8 1.1 45 36-90 13-61 (123)
419 3k2z_A LEXA repressor; winged 86.3 0.6 2.1E-05 36.6 3.8 41 40-89 16-56 (196)
420 3v97_A Ribosomal RNA large sub 86.3 0.4 1.4E-05 45.5 3.1 40 194-234 540-580 (703)
421 1v4r_A Transcriptional repress 85.8 0.45 1.5E-05 33.1 2.5 34 49-89 33-67 (102)
422 1p4x_A Staphylococcal accessor 85.8 0.42 1.4E-05 39.3 2.7 64 35-106 160-226 (250)
423 2ar0_A M.ecoki, type I restric 85.6 0.32 1.1E-05 44.6 2.1 49 184-233 161-228 (541)
424 3mwm_A ZUR, putative metal upt 85.6 0.97 3.3E-05 33.5 4.5 64 33-101 14-79 (139)
425 1j5y_A Transcriptional regulat 85.3 0.77 2.6E-05 35.8 3.9 58 34-104 22-80 (187)
426 2g9w_A Conserved hypothetical 84.9 0.73 2.5E-05 33.9 3.5 46 35-89 11-60 (138)
427 2xig_A Ferric uptake regulatio 84.8 0.97 3.3E-05 34.0 4.2 50 32-90 26-80 (150)
428 3cta_A Riboflavin kinase; stru 84.7 0.52 1.8E-05 37.9 2.8 54 49-109 26-79 (230)
429 1z6r_A MLC protein; transcript 84.6 0.87 3E-05 39.8 4.4 50 30-89 13-62 (406)
430 3axs_A Probable N(2),N(2)-dime 84.5 0.54 1.8E-05 41.3 2.9 42 193-234 52-95 (392)
431 1jhg_A Trp operon repressor; c 84.2 0.94 3.2E-05 31.9 3.5 41 32-83 44-84 (101)
432 2xvc_A ESCRT-III, SSO0910; cel 84.1 0.94 3.2E-05 28.2 3.0 46 35-89 12-57 (59)
433 3s1s_A Restriction endonucleas 84.0 0.64 2.2E-05 44.7 3.4 42 191-232 319-364 (878)
434 3l7w_A Putative uncharacterize 84.0 0.85 2.9E-05 32.1 3.3 63 33-106 9-79 (108)
435 1sd4_A Penicillinase repressor 83.8 0.56 1.9E-05 33.6 2.4 50 35-90 12-61 (126)
436 3eld_A Methyltransferase; flav 83.6 1.2 3.9E-05 37.6 4.4 42 183-225 72-113 (300)
437 2obp_A Putative DNA-binding pr 83.5 0.95 3.3E-05 31.5 3.3 49 49-105 35-85 (96)
438 2hoe_A N-acetylglucosamine kin 83.5 0.61 2.1E-05 40.5 2.8 70 25-105 12-87 (380)
439 3f8b_A Transcriptional regulat 83.2 2 6.9E-05 30.7 5.1 68 28-106 7-87 (116)
440 3hhh_A Transcriptional regulat 83.2 1.4 4.8E-05 31.6 4.3 68 28-106 8-86 (116)
441 3p8z_A Mtase, non-structural p 82.8 1.3 4.4E-05 36.3 4.2 44 181-225 67-110 (267)
442 1hsj_A Fusion protein consisti 82.7 0.76 2.6E-05 41.0 3.2 47 36-90 407-453 (487)
443 2py6_A Methyltransferase FKBM; 82.1 1.9 6.4E-05 38.0 5.5 42 192-233 225-269 (409)
444 1m6e_X S-adenosyl-L-methionnin 82.1 0.48 1.6E-05 41.2 1.6 35 192-226 50-100 (359)
445 1mzb_A Ferric uptake regulatio 81.4 1.7 5.9E-05 31.9 4.3 48 35-90 20-72 (136)
446 1yg2_A Gene activator APHA; vi 81.0 1.2 4.2E-05 34.3 3.5 60 35-105 4-76 (179)
447 2ek5_A Predicted transcription 80.5 2.3 8E-05 31.0 4.7 41 49-98 26-67 (129)
448 1fx7_A Iron-dependent represso 80.3 0.83 2.8E-05 36.8 2.4 47 52-108 26-72 (230)
449 3lkz_A Non-structural protein 80.0 1.5 5.3E-05 37.0 3.9 43 182-225 84-126 (321)
450 1bia_A BIRA bifunctional prote 79.9 2.5 8.4E-05 35.9 5.3 56 36-103 8-63 (321)
451 3elk_A Putative transcriptiona 79.7 0.84 2.9E-05 32.8 2.0 69 28-107 9-88 (117)
452 3khk_A Type I restriction-modi 79.6 1 3.5E-05 41.3 3.0 39 195-233 246-300 (544)
453 3tqn_A Transcriptional regulat 79.6 1.6 5.6E-05 30.9 3.5 42 49-99 31-73 (113)
454 4g6q_A Putative uncharacterize 79.3 0.65 2.2E-05 36.1 1.4 67 30-107 20-92 (182)
455 4fx0_A Probable transcriptiona 79.3 1.3 4.5E-05 32.9 3.0 45 38-89 38-84 (148)
456 3cuq_B Vacuolar protein-sortin 79.2 3 0.0001 33.4 5.3 35 49-90 167-201 (218)
457 2px2_A Genome polyprotein [con 78.8 0.72 2.5E-05 38.2 1.5 32 182-214 63-94 (269)
458 2pjp_A Selenocysteine-specific 78.6 0.96 3.3E-05 32.6 2.0 44 49-102 19-62 (121)
459 2xyq_A Putative 2'-O-methyl tr 78.2 2 6.9E-05 36.0 4.1 35 191-227 61-102 (290)
460 3by6_A Predicted transcription 77.6 2 6.8E-05 31.2 3.5 42 49-99 33-75 (126)
461 2yu3_A DNA-directed RNA polyme 77.4 1.4 4.7E-05 30.6 2.4 48 34-89 38-85 (95)
462 1xma_A Predicted transcription 77.3 1.2 4E-05 33.4 2.2 65 32-107 40-117 (145)
463 2vxz_A Pyrsv_GP04; viral prote 76.5 2.6 8.8E-05 31.7 3.8 44 36-90 14-57 (165)
464 1zkd_A DUF185; NESG, RPR58, st 76.2 4.2 0.00014 35.6 5.7 64 162-230 54-124 (387)
465 2b0l_A GTP-sensing transcripti 76.0 2 6.8E-05 30.0 3.0 34 49-89 41-75 (102)
466 3maj_A DNA processing chain A; 75.7 1.9 6.5E-05 37.7 3.4 52 36-101 331-382 (382)
467 1i4w_A Mitochondrial replicati 75.7 3.4 0.00011 35.7 4.9 32 194-225 59-90 (353)
468 4ham_A LMO2241 protein; struct 75.4 2.4 8.3E-05 30.9 3.5 42 49-99 36-78 (134)
469 3neu_A LIN1836 protein; struct 75.4 2.6 8.9E-05 30.4 3.6 43 49-100 35-78 (125)
470 1z05_A Transcriptional regulat 75.2 2.4 8E-05 37.4 4.0 50 30-89 36-85 (429)
471 3i71_A Ethanolamine utilizatio 75.0 7.9 0.00027 24.1 5.1 44 49-103 17-60 (68)
472 4esb_A Transcriptional regulat 74.8 1.7 6E-05 31.0 2.5 61 35-106 11-82 (115)
473 2qq9_A Diphtheria toxin repres 74.7 2.1 7.2E-05 34.3 3.2 49 50-108 24-72 (226)
474 1g60_A Adenine-specific methyl 73.6 4.9 0.00017 32.7 5.3 49 182-234 203-252 (260)
475 2w48_A Sorbitol operon regulat 73.4 2.9 9.9E-05 35.2 3.9 33 49-88 20-52 (315)
476 3c7j_A Transcriptional regulat 72.9 3.4 0.00012 33.3 4.1 41 49-98 48-88 (237)
477 3lkd_A Type I restriction-modi 72.1 1.3 4.4E-05 40.6 1.5 41 193-233 221-265 (542)
478 3iht_A S-adenosyl-L-methionine 70.1 17 0.00058 27.6 7.0 58 165-225 15-72 (174)
479 3lmm_A Uncharacterized protein 69.8 3.3 0.00011 38.2 3.7 57 35-105 432-493 (583)
480 3rkx_A Biotin-[acetyl-COA-carb 69.2 4.3 0.00015 34.5 4.1 62 36-107 6-67 (323)
481 2qlz_A Transcription factor PF 69.1 6 0.00021 32.0 4.7 52 36-101 168-219 (232)
482 3lmm_A Uncharacterized protein 69.1 0.99 3.4E-05 41.8 0.0 44 36-89 519-562 (583)
483 2p8t_A Hypothetical protein PH 68.4 3.6 0.00012 32.5 3.2 48 49-107 29-76 (200)
484 2qy6_A UPF0209 protein YFCK; s 68.1 3.6 0.00012 33.8 3.2 33 193-225 60-104 (257)
485 2o0m_A Transcriptional regulat 68.1 1.1 3.7E-05 38.5 0.0 60 35-108 22-81 (345)
486 1hw1_A FADR, fatty acid metabo 67.6 4.3 0.00015 32.3 3.6 44 49-101 29-73 (239)
487 2uyo_A Hypothetical protein ML 67.5 6.1 0.00021 33.3 4.7 61 169-233 80-141 (310)
488 2w57_A Ferric uptake regulatio 67.5 3.3 0.00011 30.9 2.7 48 35-90 19-71 (150)
489 3iei_A Leucine carboxyl methyl 67.1 11 0.00038 32.1 6.2 78 153-231 48-129 (334)
490 1p4x_A Staphylococcal accessor 67.0 3.8 0.00013 33.5 3.1 63 37-107 38-103 (250)
491 2p5k_A Arginine repressor; DNA 66.8 6.1 0.00021 24.3 3.5 29 49-87 18-51 (64)
492 3eyy_A Putative iron uptake re 66.3 4.1 0.00014 30.2 3.0 51 34-90 20-71 (145)
493 3ri2_A Transcriptional regulat 65.8 9.5 0.00033 27.5 4.8 69 25-105 13-90 (123)
494 3lsg_A Two-component response 65.7 8.7 0.0003 26.1 4.5 59 49-122 18-76 (103)
495 3ic7_A Putative transcriptiona 65.6 2 6.8E-05 31.2 1.1 43 49-100 33-76 (126)
496 3qph_A TRMB, A global transcri 65.6 0.42 1.4E-05 41.2 -3.1 58 34-102 19-76 (342)
497 2k9s_A Arabinose operon regula 65.3 9.8 0.00033 26.1 4.7 69 39-122 9-77 (107)
498 3sxy_A Transcriptional regulat 65.2 3.8 0.00013 32.3 2.8 41 49-98 34-74 (218)
499 3bwg_A Uncharacterized HTH-typ 64.2 8.5 0.00029 30.9 4.7 44 49-101 27-71 (239)
500 1lva_A Selenocysteine-specific 64.2 7.4 0.00025 31.8 4.4 56 36-102 144-199 (258)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=6.5e-40 Score=289.80 Aligned_cols=222 Identities=21% Similarity=0.297 Sum_probs=198.1
Q ss_pred hhchhHHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCccc
Q 041256 9 EETNNFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALH 88 (244)
Q Consensus 9 ~~~~~~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~ 88 (244)
.+++++..|++++.||+.+++|++|++|||||+|.+.+ +|+|++|||+++|++ +.. +.|+||+|++.|+|.
T Consensus 4 ~e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g~~------~~~-l~rlLr~L~~~gll~ 74 (353)
T 4a6d_A 4 SEDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVRAS------AHG-TELLLDICVSLKLLK 74 (353)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhCcC------HHH-HHHHHHHHHHCCCEE
Confidence 46689999999999999999999999999999999864 799999999999997 678 999999999999998
Q ss_pred ceeecCCceeecCcccc-ccccCCCCCCCHHHHHHHhcChhhhhhccchHHHHhcCCchhhhhhC---CCchhhccCCch
Q 041256 89 CSFVDGQRLYSLAPVSA-YFVRNNQNGASLSPYMALCLDKVCLDGWFGLKKQLLEGGIAFNKAHG---MQIYDYLGVDSR 164 (244)
Q Consensus 89 ~~~~~~~~~y~~t~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g---~~~~e~~~~~~~ 164 (244)
+..+.++++|++|+.+. ++.+++ +.++++++.+. .+..++.|.+|.+++++++++|...+| .++|+++.++|+
T Consensus 75 ~~~~~~~~~y~~t~~s~~~l~~~~--~~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~ 151 (353)
T 4a6d_A 75 VETRGGKAFYRNTELSSDYLTTVS--PTSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEG 151 (353)
T ss_dssp EEEETTEEEEEECHHHHHHHSTTS--TTCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHH
T ss_pred EeccCccceeeCCHHHHHHhhcCC--chHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHH
Confidence 65444567899999997 455555 67889888776 456788999999999999999999888 468999999999
Q ss_pred HHHHHHHHHHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCC------CCCc
Q 041256 165 FNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPS------YPGT 238 (244)
Q Consensus 165 ~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~------~~~i 238 (244)
....|+++|...+....+.+++.++ |++.++|||||||+|.++.+++++||+++++++|+|+|++.+++ .++|
T Consensus 152 ~~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv 230 (353)
T 4a6d_A 152 ERLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQI 230 (353)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCce
Confidence 9999999999998888889999999 99999999999999999999999999999999999999998864 3578
Q ss_pred eeecc
Q 041256 239 LFIKF 243 (244)
Q Consensus 239 ~~~~~ 243 (244)
+++.+
T Consensus 231 ~~~~g 235 (353)
T 4a6d_A 231 DFQEG 235 (353)
T ss_dssp EEEES
T ss_pred eeecC
Confidence 88865
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=5.3e-39 Score=285.04 Aligned_cols=231 Identities=44% Similarity=0.830 Sum_probs=204.6
Q ss_pred hhhhchhHHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCC--CCCCCcchhccHHHHHHHHhhC
Q 041256 7 REEETNNFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPL--KDNNPEAAAMTLDRVLRLLVSY 84 (244)
Q Consensus 7 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~--~~~~~~~~~~~l~rlLr~L~~~ 84 (244)
..++.+++..+++++++++.+++|++|++|||||+|.+.| ++|+|++|||+++|+ + |+++.. |+|+||+|++.
T Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g~~~~---~~~~~~-l~rlLr~L~~~ 88 (364)
T 3p9c_A 14 ASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAAN---PEAPDM-VDRILRLLASY 88 (364)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTTCTTC---TTHHHH-HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcCCCCC---ccchhh-HHHHHHHHHhC
Confidence 4568889999999999999999999999999999999853 259999999999997 5 432348 99999999999
Q ss_pred Ccccceeec---C--CceeecCccccccccCCCCCCCHHHHHHHhcChhhhhhccchHHHHhcCCchhhhhhCCCchhhc
Q 041256 85 NALHCSFVD---G--QRLYSLAPVSAYFVRNNQNGASLSPYMALCLDKVCLDGWFGLKKQLLEGGIAFNKAHGMQIYDYL 159 (244)
Q Consensus 85 gll~~~~~~---~--~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~e~~ 159 (244)
|+|+++.+. + +++|++|+.++.|+.+. ++.++++++.+..++.++..|.+|.+++++|.++|+..+|.++|+|+
T Consensus 89 g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~ 167 (364)
T 3p9c_A 89 NVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNE-DGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYH 167 (364)
T ss_dssp TSEEEEEEECSSSCEEEEEEECGGGGGSSCCT-TSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHH
T ss_pred CCEEEeccccCCCCcCCEEecCHHHHHHcCCC-CCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHH
Confidence 999964211 1 36899999999887765 46789999887767788999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCCCCCce
Q 041256 160 GVDSRFNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPSYPGTL 239 (244)
Q Consensus 160 ~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~~i~ 239 (244)
.++|+..+.|+++|...+....+.+++.++.|++..+|||||||+|.++..+++++|+++++++|+|++++.+++.++|+
T Consensus 168 ~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~ 247 (364)
T 3p9c_A 168 GTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVT 247 (364)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEE
T ss_pred HhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeE
Confidence 99999999999999998887778899988768888999999999999999999999999999999999999999888999
Q ss_pred eecc
Q 041256 240 FIKF 243 (244)
Q Consensus 240 ~~~~ 243 (244)
++.+
T Consensus 248 ~~~~ 251 (364)
T 3p9c_A 248 HVGG 251 (364)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8764
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=8.3e-39 Score=284.14 Aligned_cols=231 Identities=52% Similarity=0.889 Sum_probs=203.5
Q ss_pred hhchhHHHHHHHHhhhHHHHHHHHHHhcChhhHHhhc-CCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcc
Q 041256 9 EETNNFSYAMELASAIVLPAVMQAVVELDVFEIISKA-GPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNAL 87 (244)
Q Consensus 9 ~~~~~~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~-~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll 87 (244)
++.+++..++++++|++.+++|++|++|||||+|++. |+++|+|++|||+++|.. +|+++.. |+|+||+|++.|+|
T Consensus 17 ~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~--~~~~~~~-l~rlLr~L~~~gll 93 (368)
T 3reo_A 17 SDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTT--NPEAPVM-LDRVLRLLASYSVV 93 (368)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCC--CTTHHHH-HHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcC--CCcchhh-HHHHHHHHHhCCCe
Confidence 6888999999999999999999999999999999985 434689999999999842 2433457 99999999999999
Q ss_pred cceee---cC--CceeecCccccccccCCCCCCCHHHHHHHhcChhhhhhccchHHHHhcCCchhhhhhCCCchhhccCC
Q 041256 88 HCSFV---DG--QRLYSLAPVSAYFVRNNQNGASLSPYMALCLDKVCLDGWFGLKKQLLEGGIAFNKAHGMQIYDYLGVD 162 (244)
Q Consensus 88 ~~~~~---~~--~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~e~~~~~ 162 (244)
++... .+ +++|++|+.++.|+.+. ++.++++++.+..++.++..|.+|.+++++|.++|+..+|.++|+|+.++
T Consensus 94 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~ 172 (368)
T 3reo_A 94 TYTLRELPSGKVERLYGLAPVCKFLTKNE-DGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTD 172 (368)
T ss_dssp EEEEEECTTSCEEEEEEECTTHHHHSCCT-TSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTC
T ss_pred EEecccCCCCcccceeCcCHHHHHHhCCC-CCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhC
Confidence 96311 11 36899999999887665 46789999887767788899999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCCCCCceeec
Q 041256 163 SRFNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPSYPGTLFIK 242 (244)
Q Consensus 163 ~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~~i~~~~ 242 (244)
|+..+.|+++|...+....+.+++.+++|++..+|||||||+|.++..+++++|+++++++|+|++++.+++.++|+++.
T Consensus 173 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 252 (368)
T 3reo_A 173 HRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLG 252 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEE
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEe
Confidence 99999999999998887778889988768888999999999999999999999999999999999999999888998875
Q ss_pred c
Q 041256 243 F 243 (244)
Q Consensus 243 ~ 243 (244)
+
T Consensus 253 ~ 253 (368)
T 3reo_A 253 G 253 (368)
T ss_dssp C
T ss_pred c
Confidence 4
No 4
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=3.4e-36 Score=266.09 Aligned_cols=228 Identities=27% Similarity=0.411 Sum_probs=199.6
Q ss_pred hhhhchhHHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCc
Q 041256 7 REEETNNFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNA 86 (244)
Q Consensus 7 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gl 86 (244)
.++..++...+++++++++.+++|++++++||||+|++.+ +|+|++|||+++|++ |++++. ++|+||+|++.|+
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g~~---~~~~~~-l~rlLr~L~~~gl 77 (358)
T 1zg3_A 4 ESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLKLH---PSKVNI-LHRFLRLLTHNGF 77 (358)
T ss_dssp TSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTTCC---TTTHHH-HHHHHHHHHHTTS
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcCCC---CcchHH-HHHHHHHHhhCCc
Confidence 4678899999999999999999999999999999999853 599999999999995 333567 9999999999999
Q ss_pred ccceee---c-C---CceeecCccccccccCCCCCCCHHHHHHHhcChhhhhhccchHHHHhcC--CchhhhhhCCCchh
Q 041256 87 LHCSFV---D-G---QRLYSLAPVSAYFVRNNQNGASLSPYMALCLDKVCLDGWFGLKKQLLEG--GIAFNKAHGMQIYD 157 (244)
Q Consensus 87 l~~~~~---~-~---~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g--~~~~~~~~g~~~~e 157 (244)
|++... . + +++|++|+.++.|++++ +.++++++.+..++.+++.|.+|+++++++ .++|+.++|.++|+
T Consensus 78 l~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~ 155 (358)
T 1zg3_A 78 FAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK--PTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWD 155 (358)
T ss_dssp EEEEEECCSSSSCCCEEEEEECHHHHTTCTTS--TTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHH
T ss_pred EEEecccccccCCCCCCEEeCCHHHHHHhCCC--CccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHH
Confidence 996300 1 1 47999999999888776 568999998876777889999999999998 78999999999999
Q ss_pred hccCCchHHH--HHHHHHHhcchhhHHHHHhhcC-CCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCC
Q 041256 158 YLGVDSRFND--VFNNGMLSHTSIVMEKVLESYK-GFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPS 234 (244)
Q Consensus 158 ~~~~~~~~~~--~f~~aM~~~~~~~~~~~~~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~ 234 (244)
++.++|+..+ .|+++|...+.... .+++.++ .|++..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 156 ~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 234 (358)
T 1zg3_A 156 FLNKDSESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG 234 (358)
T ss_dssp HHTSGGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC
T ss_pred HHhcChhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc
Confidence 9999999999 99999999887766 7888882 277889999999999999999999999999999999999999998
Q ss_pred CCCceeecc
Q 041256 235 YPGTLFIKF 243 (244)
Q Consensus 235 ~~~i~~~~~ 243 (244)
.++|+++.+
T Consensus 235 ~~~v~~~~~ 243 (358)
T 1zg3_A 235 NENLNFVGG 243 (358)
T ss_dssp CSSEEEEEC
T ss_pred CCCcEEEeC
Confidence 888887753
No 5
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=6.5e-36 Score=263.75 Aligned_cols=227 Identities=22% Similarity=0.384 Sum_probs=200.5
Q ss_pred chhhhchhHHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCC
Q 041256 6 DREEETNNFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYN 85 (244)
Q Consensus 6 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~g 85 (244)
+.++..++...+++++++++.+++|++++++||||+|++.+ +|+|++|||+++|++ |++++. ++|+||+|++.|
T Consensus 9 ~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~~~---~~~~~~-l~rlLr~L~~~g 82 (352)
T 1fp2_A 9 KPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQVP---SSKIGN-VRRLMRYLAHNG 82 (352)
T ss_dssp CSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTCC---GGGHHH-HHHHHHHHHHTT
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhCcC---CCChHH-HHHHHHHHHhCC
Confidence 34678889999999999999999999999999999999853 599999999999995 444668 999999999999
Q ss_pred cccceeecCCceeecCccccccccCCCCCCCHHHHHHHhcChhhhhhccchHHHHh-cCCchhhhhhCCCchhhccCCch
Q 041256 86 ALHCSFVDGQRLYSLAPVSAYFVRNNQNGASLSPYMALCLDKVCLDGWFGLKKQLL-EGGIAFNKAHGMQIYDYLGVDSR 164 (244)
Q Consensus 86 ll~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~~~~~~~~g~~~~e~~~~~~~ 164 (244)
+|++.. .+++.|++|+.|+.|++++ +.++++++.+..++.++..|.+|+++++ +|+++|+..+|.++|+++.++|+
T Consensus 83 ll~~~~-~~~~~y~~t~~s~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~ 159 (352)
T 1fp2_A 83 FFEIIT-KEEESYALTVASELLVRGS--DLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPE 159 (352)
T ss_dssp SEEEEE-SSSEEEEECHHHHTTSTTS--SSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHH
T ss_pred eEEEec-CCCCeEeCCHHHHHHhCCC--CccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChH
Confidence 999521 1358999999999888776 5689999888766777889999999999 88899999999999999999999
Q ss_pred HHHHHHHHHHhcchhhHHHHHhhc--CCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCCCCCceeec
Q 041256 165 FNDVFNNGMLSHTSIVMEKVLESY--KGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPSYPGTLFIK 242 (244)
Q Consensus 165 ~~~~f~~aM~~~~~~~~~~~~~~~--~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~~i~~~~ 242 (244)
..+.|+++|...+....+. ++.| + |++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+++.
T Consensus 160 ~~~~f~~~m~~~~~~~~~~-~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 237 (352)
T 1fp2_A 160 YNTSFNDAMASDSKLINLA-LRDCDFV-FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVG 237 (352)
T ss_dssp HHHHHHHHHHHTHHHHHHH-HHTCHHH-HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEE
T ss_pred HHHHHHHHHHhcchhhhhH-HHhcccc-cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEe
Confidence 9999999999988776666 7777 4 7788999999999999999999999999999999999999999877888765
Q ss_pred c
Q 041256 243 F 243 (244)
Q Consensus 243 ~ 243 (244)
+
T Consensus 238 ~ 238 (352)
T 1fp2_A 238 G 238 (352)
T ss_dssp C
T ss_pred c
Confidence 3
No 6
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=1.4e-35 Score=261.24 Aligned_cols=216 Identities=18% Similarity=0.202 Sum_probs=193.6
Q ss_pred hhchhHHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCccc
Q 041256 9 EETNNFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALH 88 (244)
Q Consensus 9 ~~~~~~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~ 88 (244)
...++...++++++|++.+++|++++++||||+|.+ ||+|++|||+++|++ ++. ++|+||+|++.|+|+
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g~~------~~~-l~rlLr~l~~~g~l~ 86 (348)
T 3lst_A 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATGTD------ADA-LRRVLRLLAVRDVVR 86 (348)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEE
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhCcC------HHH-HHHHHHHHHhCCCEE
Confidence 445788899999999999999999999999999986 699999999999997 678 999999999999999
Q ss_pred ceeecCCceeecCccccccccCCCCCCCHHHHHHHhcChhhhhhccchHHHHhcCCchhhhhhCCCchhhccCCchHHHH
Q 041256 89 CSFVDGQRLYSLAPVSAYFVRNNQNGASLSPYMALCLDKVCLDGWFGLKKQLLEGGIAFNKAHGMQIYDYLGVDSRFNDV 168 (244)
Q Consensus 89 ~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~e~~~~~~~~~~~ 168 (244)
+ ++++|++|+.|..|++++ +.++++++.+..++.+++.|.+|++++++|+++|+..+|.++|+|+.++|+..+.
T Consensus 87 ~----~~~~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (348)
T 3lst_A 87 E----SDGRFALTDKGAALRSDS--PVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEAL 160 (348)
T ss_dssp E----ETTEEEECTTTGGGSTTS--SSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHH
T ss_pred e----cCCEEecCHHHHHHhcCC--CccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHH
Confidence 4 368999999999887765 5688888887667667889999999999999999999999999999999999999
Q ss_pred HHHHHHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCC-----CCCceeec
Q 041256 169 FNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPS-----YPGTLFIK 242 (244)
Q Consensus 169 f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-----~~~i~~~~ 242 (244)
|+++|...+....+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|.++...+. .++|+++.
T Consensus 161 f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~ 238 (348)
T 3lst_A 161 YYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVE 238 (348)
T ss_dssp HHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEE
T ss_pred HHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEe
Confidence 999999998888889999998 99999999999999999999999999999999999999883321 13577764
No 7
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=3.6e-35 Score=260.89 Aligned_cols=232 Identities=38% Similarity=0.688 Sum_probs=185.4
Q ss_pred cccchhhhchhHHHHH--HHHhhhHHHHHHHHHHhcChhhHHhhcCCCCC---CCHHHHHHhCCC---CCCCCcchhccH
Q 041256 3 SIADREEETNNFSYAM--ELASAIVLPAVMQAVVELDVFEIISKAGPGAK---LSVAEIVAQIPL---KDNNPEAAAMTL 74 (244)
Q Consensus 3 ~~~~~~~~~~~~~~l~--~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~---~t~~eLA~~~~~---~~~~~~~~~~~l 74 (244)
.+.+.++..+++..++ +++.+++.+++|++++++||||+|++.+ +| +|++|||+++|+ + |.+++. +
T Consensus 12 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g--~pg~~~t~~eLA~~~~~~~~~---~~~~~~-l 85 (372)
T 1fp1_D 12 QISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKAT--PPGAFMSPSEIASKLPASTQH---SDLPNR-L 85 (372)
T ss_dssp -------CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCS--STTCCBCHHHHHTTSCGGGCC---TTHHHH-H
T ss_pred ccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcC--CCCCCcCHHHHHHhcCCCCCC---CcChHH-H
Confidence 3556777888999999 9999999999999999999999999742 15 999999999998 4 322567 9
Q ss_pred HHHHHHHhhCCccccee---ecC--CceeecCccccccccCCCCC-CCHHHHHHHhcChhhhhhccchHHHHhcC-Cchh
Q 041256 75 DRVLRLLVSYNALHCSF---VDG--QRLYSLAPVSAYFVRNNQNG-ASLSPYMALCLDKVCLDGWFGLKKQLLEG-GIAF 147 (244)
Q Consensus 75 ~rlLr~L~~~gll~~~~---~~~--~~~y~~t~~s~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g-~~~~ 147 (244)
+|+||+|++.|+|++.. +.+ +++|++|+.+..|++++ + .++++++.+..++.+++.|.+|+++++++ .++|
T Consensus 86 ~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~ 163 (372)
T 1fp1_D 86 DRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDE--SRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLF 163 (372)
T ss_dssp HHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGGSTTC--TTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC----
T ss_pred HHHHHHHhhCCceEecccccCCCCcCCeEecCHHHHHHhCCC--CCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChh
Confidence 99999999999999631 011 36999999999888776 4 57899988876777788999999999998 8899
Q ss_pred hhhhCCCchhhccCCchHHHHHHHHHHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 041256 148 NKAHGMQIYDYLGVDSRFNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPY 227 (244)
Q Consensus 148 ~~~~g~~~~e~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~ 227 (244)
+..+|.++|+++.++|+..+.|+++|...+....+.+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.
T Consensus 164 ~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~ 243 (372)
T 1fp1_D 164 KNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ 243 (372)
T ss_dssp ----------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH
T ss_pred HHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHH
Confidence 99999999999999999999999999998887778889988667888999999999999999999999999999999999
Q ss_pred HhhhCCCCCCceeec
Q 041256 228 VIKDAPSYPGTLFIK 242 (244)
Q Consensus 228 vi~~a~~~~~i~~~~ 242 (244)
+++.+++.++|+++.
T Consensus 244 ~~~~a~~~~~v~~~~ 258 (372)
T 1fp1_D 244 VIENAPPLSGIEHVG 258 (372)
T ss_dssp HHTTCCCCTTEEEEE
T ss_pred HHHhhhhcCCCEEEe
Confidence 999999888888775
No 8
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=3e-35 Score=261.22 Aligned_cols=216 Identities=18% Similarity=0.300 Sum_probs=194.8
Q ss_pred hchhHHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 10 ETNNFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 10 ~~~~~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
..+...+++++++|++.+++|++++++||||+|.+ +|+|++|||+++|++ ++. ++|+||+|++.|+|++
T Consensus 35 ~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g~~------~~~-l~rlLr~L~~~g~l~~ 103 (369)
T 3gwz_A 35 RAAAEETVNDILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATGAH------EQT-LRRLLRLLATVGVFDD 103 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSSEE
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHCcC------HHH-HHHHHHHHHhCCCEEE
Confidence 34667889999999999999999999999999985 699999999999997 678 9999999999999994
Q ss_pred eeecCCce-eecCccccccccCCCCCCCHHHHHHHhcChhhhhhccchHHHHhcCCchhhhhhCCCchhhccCCchHHHH
Q 041256 90 SFVDGQRL-YSLAPVSAYFVRNNQNGASLSPYMALCLDKVCLDGWFGLKKQLLEGGIAFNKAHGMQIYDYLGVDSRFNDV 168 (244)
Q Consensus 90 ~~~~~~~~-y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~e~~~~~~~~~~~ 168 (244)
.++++ |++|+.++.|.+++ +.++.+++.+..++..+..|.+|.++++++.++|...+|.++|+|+.++|+..+.
T Consensus 104 ---~~~~~~y~~t~~s~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 178 (369)
T 3gwz_A 104 ---LGHDDLFAQNALSAVLLPDP--ASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKAREL 178 (369)
T ss_dssp ---CSSTTEEECCHHHHTTSCCT--TCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHH
T ss_pred ---eCCCceEecCHHHHHHhcCC--chhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHH
Confidence 44688 99999999887765 5678888887766667789999999999999999999999999999999999999
Q ss_pred HHHHHHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCC-------CCCceee
Q 041256 169 FNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPS-------YPGTLFI 241 (244)
Q Consensus 169 f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~~i~~~ 241 (244)
|+++|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .++|+++
T Consensus 179 f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~ 257 (369)
T 3gwz_A 179 FNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEIL 257 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEe
Confidence 999999988887888999998 89999999999999999999999999999999999999998874 2467776
Q ss_pred c
Q 041256 242 K 242 (244)
Q Consensus 242 ~ 242 (244)
.
T Consensus 258 ~ 258 (369)
T 3gwz_A 258 P 258 (369)
T ss_dssp E
T ss_pred c
Confidence 5
No 9
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=3.2e-35 Score=257.19 Aligned_cols=213 Identities=21% Similarity=0.296 Sum_probs=188.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeec
Q 041256 14 FSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVD 93 (244)
Q Consensus 14 ~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~ 93 (244)
...+++++.|++.+++|++|+++||||+|.+ ||+|++|||+++|++ ++. ++|+||+|++.|++.+ .
T Consensus 6 ~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~~~------~~~-l~rlLr~l~~~gl~~~---~ 71 (332)
T 3i53_A 6 AHIGLRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAGAH------ADS-LDRLLRHLVAVGLFTR---D 71 (332)
T ss_dssp CSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE---C
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHCcC------HHH-HHHHHHHHHhCCcEEe---c
Confidence 3457899999999999999999999999986 699999999999997 678 9999999999999994 4
Q ss_pred CCceeecCccccccccCCCCCCCHHHHHHHhcChhhh-hhccchHHHHhcCCchhhhhhCCCchhhccCCchHHHHHHHH
Q 041256 94 GQRLYSLAPVSAYFVRNNQNGASLSPYMALCLDKVCL-DGWFGLKKQLLEGGIAFNKAHGMQIYDYLGVDSRFNDVFNNG 172 (244)
Q Consensus 94 ~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~g~~~~e~~~~~~~~~~~f~~a 172 (244)
++++|.+|+.++.|.+++ +.++.+++.+..++..+ ..|.+|.+++++++++|+..+|.++|+++.++|+..+.|+++
T Consensus 72 ~~~~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 149 (332)
T 3i53_A 72 GQGVYGLTEFGEQLRDDH--AAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTL 149 (332)
T ss_dssp TTSBEEECTTGGGGSTTC--TTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHH
T ss_pred CCCeEEcCHhHHHHhcCC--chhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHH
Confidence 568999999999887665 56788888776444455 789999999999999999999989999999999999999999
Q ss_pred HHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCC-------CCCceeecc
Q 041256 173 MLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPS-------YPGTLFIKF 243 (244)
Q Consensus 173 M~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~~i~~~~~ 243 (244)
|...+....+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .++|+++.+
T Consensus 150 m~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 226 (332)
T 3i53_A 150 MSHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVG 226 (332)
T ss_dssp HHHHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHHhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecC
Confidence 99988776777888888 88889999999999999999999999999999999999999874 246777653
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=5.6e-34 Score=249.28 Aligned_cols=210 Identities=19% Similarity=0.285 Sum_probs=188.1
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCccccee
Q 041256 12 NNFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSF 91 (244)
Q Consensus 12 ~~~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~ 91 (244)
.+...++++++|++.+++|++++++||||+|.+ +|+|++|||+++|++ ++. ++|+||+|++.|+|++
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~~~------~~~-l~r~Lr~L~~~g~l~~-- 73 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVGSD------AER-IHRLMRLLVAFEIFQG-- 73 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE--
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhCcC------HHH-HHHHHHHHHhCCceEe--
Confidence 567889999999999999999999999999976 699999999999997 678 9999999999999995
Q ss_pred ecCCceeecCccccccccCCCCCCCHHHHHHHhcChhhhhhccchHHHHhcCCchhhhhhCCCchhhccCCchHHHHHHH
Q 041256 92 VDGQRLYSLAPVSAYFVRNNQNGASLSPYMALCLDKVCLDGWFGLKKQLLEGGIAFNKAHGMQIYDYLGVDSRFNDVFNN 171 (244)
Q Consensus 92 ~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~e~~~~~~~~~~~f~~ 171 (244)
.+++.|++|+.+..|+ ++ +.++++++.+..++.+ ..|.+|.+++++++++|+..+|.++|+++.++|+..+.|++
T Consensus 74 -~~~~~y~~t~~s~~l~-~~--~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~ 148 (334)
T 2ip2_A 74 -DTRDGYANTPTSHLLR-DV--EGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLL 148 (334)
T ss_dssp -ETTTEEEECHHHHTTS-SS--TTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHH
T ss_pred -cCCCeEecCHHHHHHh-CC--CccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHH
Confidence 4468999999999888 65 5688998887756544 89999999999999999999999999999999999999999
Q ss_pred HHHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCCC-------CCceeec
Q 041256 172 GMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPSY-------PGTLFIK 242 (244)
Q Consensus 172 aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~~i~~~~ 242 (244)
+| ..+....+.+++.++ |++ .+|||||||+|.++..+++++|+++++++|+|.+++.+++. ++|+++.
T Consensus 149 ~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~ 223 (334)
T 2ip2_A 149 AM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVG 223 (334)
T ss_dssp HH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEE
T ss_pred HH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEec
Confidence 99 887777788999998 888 99999999999999999999999999999999999888652 3577654
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=2.9e-33 Score=247.91 Aligned_cols=215 Identities=19% Similarity=0.209 Sum_probs=179.1
Q ss_pred chhhhchhHHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCC
Q 041256 6 DREEETNNFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYN 85 (244)
Q Consensus 6 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~g 85 (244)
++.++.++...++++++|++.+++|++++++||||+|++.+ +|+|++|||+++|++ ++. ++|+||+|++.|
T Consensus 8 ~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g~~------~~~-l~rlLr~l~~~g 78 (363)
T 3dp7_A 8 EQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTGLT------RYA-AQVLLEASLTIG 78 (363)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHTCC------HHH-HHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhCcC------HHH-HHHHHHHHhhCC
Confidence 45678899999999999999999999999999999999843 699999999999997 678 999999999999
Q ss_pred cccceeecCCceeecCccccccccCCCCCCCHHHHHHHhcChhhhhhccchHHHHhcCCchhhhhhC--CCchhhccCCc
Q 041256 86 ALHCSFVDGQRLYSLAPVSAYFVRNNQNGASLSPYMALCLDKVCLDGWFGLKKQLLEGGIAFNKAHG--MQIYDYLGVDS 163 (244)
Q Consensus 86 ll~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g--~~~~e~~~~~~ 163 (244)
+|++ . +++|++|+.|.+|++++ + ...++.+. .+..++.|.+|++++++|.+++...+| .++|+++.++|
T Consensus 79 ~l~~---~-~~~y~~t~~s~~L~~~~--~--~~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~ 149 (363)
T 3dp7_A 79 TILL---E-EDRYVLAKAGWFLLNDK--M--ARVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLP 149 (363)
T ss_dssp SEEE---E-TTEEEECHHHHHHHHCH--H--HHHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSC
T ss_pred CeEe---c-CCEEecccchHHhhCCC--c--ccchheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCH
Confidence 9984 3 58999999999888775 2 22333333 456788999999999999998888888 68999999999
Q ss_pred hHHH----HHHHHHHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCCC----
Q 041256 164 RFND----VFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPSY---- 235 (244)
Q Consensus 164 ~~~~----~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~---- 235 (244)
+..+ .|+.+|..... ..++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++.
T Consensus 150 ~~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~ 225 (363)
T 3dp7_A 150 EQVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGL 225 (363)
T ss_dssp HHHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhc
Confidence 8766 37777765432 23444443 357799999999999999999999999999999999999988752
Q ss_pred ---CCceeec
Q 041256 236 ---PGTLFIK 242 (244)
Q Consensus 236 ---~~i~~~~ 242 (244)
++|+++.
T Consensus 226 ~~~~~v~~~~ 235 (363)
T 3dp7_A 226 SGSERIHGHG 235 (363)
T ss_dssp TTGGGEEEEE
T ss_pred CcccceEEEE
Confidence 3577664
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.97 E-value=6.7e-32 Score=239.39 Aligned_cols=207 Identities=18% Similarity=0.281 Sum_probs=185.3
Q ss_pred chhHHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 11 TNNFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 11 ~~~~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
.+....+++++.+++.+++|++++++||||.|.+ +|+|++|||+++|++ +.. +.|+||+|++.|+|++
T Consensus 14 ~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g~~------~~~-l~r~Lr~L~~~Gll~~- 81 (374)
T 1qzz_A 14 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDTH------PQA-LSRLVRHLTVVGVLEG- 81 (374)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEC-
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhCcC------HHH-HHHHHHHHhhCCCEEE-
Confidence 4566789999999999999999999999999965 699999999999997 678 9999999999999995
Q ss_pred eecCCc--eeecCccccccccCCCCCCCHHHHHHHhcChhhh-hhccchHHHHhcCCchhhhhhCCCchhhccCCchHHH
Q 041256 91 FVDGQR--LYSLAPVSAYFVRNNQNGASLSPYMALCLDKVCL-DGWFGLKKQLLEGGIAFNKAHGMQIYDYLGVDSRFND 167 (244)
Q Consensus 91 ~~~~~~--~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~g~~~~e~~~~~~~~~~ 167 (244)
..++ .|++|+.+..|++++ +.++++++.+..++..+ ..|.+|.++++++.++|+..+|.++|+++..+|+..+
T Consensus 82 --~~~~~~~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (374)
T 1qzz_A 82 --GEKQGRPLRPTRLGMLLADGH--PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALAD 157 (374)
T ss_dssp --CCC-CCCCEECTTGGGGSTTC--TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHH
T ss_pred --eCCCCeEEEEChHHHhhcCCC--cccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHH
Confidence 3456 899999999888776 66899988776544556 8999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCC
Q 041256 168 VFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPS 234 (244)
Q Consensus 168 ~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~ 234 (244)
.|+.+|........+.+++.++ +++..+|||||||+|.++..+++++|+++++.+|+|.+++.+++
T Consensus 158 ~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~ 223 (374)
T 1qzz_A 158 SFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARR 223 (374)
T ss_dssp HHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHH
Confidence 9999999887777778899888 88889999999999999999999999999999999999998864
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.97 E-value=7.4e-31 Score=231.64 Aligned_cols=205 Identities=17% Similarity=0.275 Sum_probs=184.2
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceee
Q 041256 13 NFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFV 92 (244)
Q Consensus 13 ~~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~ 92 (244)
...++++++.+++.+++|.+++++|||+.|.+ +|+|++|||+++|++ +.. +.|+||+|++.|+|.+
T Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~~------~~~-l~r~L~~L~~~g~~~~--- 84 (360)
T 1tw3_A 19 DALRTLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDTR------PEA-LLRLIRHLVAIGLLEE--- 84 (360)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE---
T ss_pred chHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhCcC------HHH-HHHHHHHHHHCCCEEe---
Confidence 35788999999999999999999999999965 699999999999997 677 9999999999999995
Q ss_pred cCCceeecCccccccccCCCCCCCHHHHHHHhcChh-hhhhccchHHHHhcCCchhhhhhCCCchhhccCCchHHHHHHH
Q 041256 93 DGQRLYSLAPVSAYFVRNNQNGASLSPYMALCLDKV-CLDGWFGLKKQLLEGGIAFNKAHGMQIYDYLGVDSRFNDVFNN 171 (244)
Q Consensus 93 ~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~g~~~~~~~~g~~~~e~~~~~~~~~~~f~~ 171 (244)
.++++|++|+.+..|++++ +.+++.++.+...+. .+..|.+|.+.+++|.++|+..+|.++|+++..+|+....|..
T Consensus 85 ~~~g~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~ 162 (360)
T 1tw3_A 85 DAPGEFVPTEVGELLADDH--PAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDS 162 (360)
T ss_dssp EETTEEEECTTGGGGSTTS--TTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHH
T ss_pred cCCCeEEeCHHHHHHhcCC--chhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHH
Confidence 2468999999999898776 678888887764443 5789999999999999999999999999999999999999999
Q ss_pred HHHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCC
Q 041256 172 GMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPS 234 (244)
Q Consensus 172 aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~ 234 (244)
+|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++.+|+|.+++.+++
T Consensus 163 ~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~ 224 (360)
T 1tw3_A 163 LLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARS 224 (360)
T ss_dssp HHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHH
T ss_pred HHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHH
Confidence 999888777788899988 88889999999999999999999999999999999999988764
No 14
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.97 E-value=3.9e-30 Score=227.21 Aligned_cols=207 Identities=19% Similarity=0.271 Sum_probs=179.4
Q ss_pred hhhhchhHHHHHHHHh-hhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCC
Q 041256 7 REEETNNFSYAMELAS-AIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYN 85 (244)
Q Consensus 7 ~~~~~~~~~~l~~~~~-g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~g 85 (244)
..+..++..+++++++ |++.+++|++++++||||.|.+ +|+|++|||+++|++ ++. ++|+||+|++.|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g~~------~~~-l~rlLr~L~~~g 92 (359)
T 1x19_A 24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTGSV------PPR-LEMLLETLRQMR 92 (359)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHTCC------HHH-HHHHHHHHHHTT
T ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhCcC------hHH-HHHHHHHHHhCC
Confidence 3456778889999997 8999999999999999999986 699999999999997 678 999999999999
Q ss_pred cccceeecCCceeecCccc-cccccCCCCC---CCHHHHHHHhcChhhhhhccchHHHHhcCCchhhhhhCCCchhhccC
Q 041256 86 ALHCSFVDGQRLYSLAPVS-AYFVRNNQNG---ASLSPYMALCLDKVCLDGWFGLKKQLLEGGIAFNKAHGMQIYDYLGV 161 (244)
Q Consensus 86 ll~~~~~~~~~~y~~t~~s-~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~e~~~~ 161 (244)
+|++ . +++|++|+.+ .++++++ + .++++++.+. .+.+++.|.+|+++++++.+ |+++.+
T Consensus 93 ll~~---~-~~~y~~t~~~~~~l~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~ 155 (359)
T 1x19_A 93 VINL---E-DGKWSLTEFADYMFSPTP--KEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVP 155 (359)
T ss_dssp SEEE---E-TTEEEECHHHHHHSSSSC--SBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSC
T ss_pred CeEe---e-CCeEecCHHHHHHhcCCC--CCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------Cccccc
Confidence 9995 3 3699999975 5777665 5 5788888776 45678899999999988654 778888
Q ss_pred Cch---HHHHHHHHHHhcch-hhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCC---
Q 041256 162 DSR---FNDVFNNGMLSHTS-IVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPS--- 234 (244)
Q Consensus 162 ~~~---~~~~f~~aM~~~~~-~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~--- 234 (244)
+|+ ..+.|..+|...+. ...+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 156 ~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 234 (359)
T 1x19_A 156 YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAA 234 (359)
T ss_dssp SSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHH
Confidence 999 99999999999988 77788999998 88889999999999999999999999999999999999998864
Q ss_pred ---CC-Cceeec
Q 041256 235 ---YP-GTLFIK 242 (244)
Q Consensus 235 ---~~-~i~~~~ 242 (244)
.+ +|+++.
T Consensus 235 ~~~~~~~v~~~~ 246 (359)
T 1x19_A 235 EKGVADRMRGIA 246 (359)
T ss_dssp HTTCTTTEEEEE
T ss_pred hcCCCCCEEEEe
Confidence 22 477654
No 15
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.96 E-value=1.6e-29 Score=220.68 Aligned_cols=198 Identities=17% Similarity=0.179 Sum_probs=176.2
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceee
Q 041256 13 NFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFV 92 (244)
Q Consensus 13 ~~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~ 92 (244)
....+++++.|++.+++|++++++||||+|++ +|+|++|||+++|++ ++. ++|+||+|++.|+|++
T Consensus 6 ~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~~------~~~-l~r~L~~L~~~g~l~~--- 71 (335)
T 2r3s_A 6 SPALFFNTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQTS------ERG-MRMLCDYLVIIGFMTK--- 71 (335)
T ss_dssp CSHHHHHHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhCCC------chH-HHHHHHHHHhcCCeEe---
Confidence 34689999999999999999999999999986 699999999999997 678 9999999999999984
Q ss_pred cCCceeecCccc-cccccCCCCCCCHHHHHHHhcChhhhhhccchHHHHhcCCchhhhhhCCCchhhccCCchHHHHHHH
Q 041256 93 DGQRLYSLAPVS-AYFVRNNQNGASLSPYMALCLDKVCLDGWFGLKKQLLEGGIAFNKAHGMQIYDYLGVDSRFNDVFNN 171 (244)
Q Consensus 93 ~~~~~y~~t~~s-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~e~~~~~~~~~~~f~~ 171 (244)
. +++|++|+.+ ..|.+++ +.++++++.+..++..++.|.+|.++++++.++|+ + |+++.++++....|..
T Consensus 72 ~-~~~y~~t~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~ 142 (335)
T 2r3s_A 72 Q-AEGYRLTSDSAMFLDRQS--KFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAK 142 (335)
T ss_dssp E-TTEEEECHHHHHHTCTTS--TTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHH
T ss_pred c-CCEEecCHHHHHHhccCC--cHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHH
Confidence 3 5899999999 5777766 56788888877555678899999999999887764 3 8888899999999999
Q ss_pred HHHhcchhhHHHHHhhcCCC--CCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCC
Q 041256 172 GMLSHTSIVMEKVLESYKGF--EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPS 234 (244)
Q Consensus 172 aM~~~~~~~~~~~~~~~~~~--~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~ 234 (244)
+|..........+++.++ + .+..+|+|||||+|.++..+++++|+.+++++|++.+++.+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 206 (335)
T 2r3s_A 143 AMSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKE 206 (335)
T ss_dssp HSGGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHH
Confidence 999988877778888888 7 7889999999999999999999999999999999988888765
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.96 E-value=6.9e-29 Score=218.39 Aligned_cols=209 Identities=19% Similarity=0.314 Sum_probs=169.8
Q ss_pred cchhhhchhHHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhC
Q 041256 5 ADREEETNNFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSY 84 (244)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~ 84 (244)
.|..++ +....+++++.+++.+++|++++++||||+|. +|+|++|||+++|++ ++. ++|+||+|++.
T Consensus 17 ~~~~~l-~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~-----~~~t~~elA~~~~~~------~~~-l~rlLr~L~~~ 83 (352)
T 3mcz_A 17 EDKAAL-TSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ-----TGRTPAEVAASFGMV------EGK-AAILLHALAAL 83 (352)
T ss_dssp CSCCCC-CSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT-----SCBCHHHHHHHHTCC------HHH-HHHHHHHHHHT
T ss_pred cCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHCChHHHhC-----CCCCHHHHHHHhCcC------hHH-HHHHHHHHHHC
Confidence 344444 44555999999999999999999999999995 389999999999997 678 99999999999
Q ss_pred CcccceeecCCceeecCcccc-ccccCCCCCCCHHHHHHHhcChhhhhhccchHHHHhcCCch-hhhhhCCCchhhccCC
Q 041256 85 NALHCSFVDGQRLYSLAPVSA-YFVRNNQNGASLSPYMALCLDKVCLDGWFGLKKQLLEGGIA-FNKAHGMQIYDYLGVD 162 (244)
Q Consensus 85 gll~~~~~~~~~~y~~t~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~-~~~~~g~~~~e~~~~~ 162 (244)
|+|++ .+ ++|++|+.+. ++.++. +.+++.++.+. ...++.|.+|.+++++|.+. |+.. .++.++
T Consensus 84 gll~~---~~-~~y~~t~~s~~~l~~~~--~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~ 149 (352)
T 3mcz_A 84 GLLTK---EG-DAFRNTALTERYLTTTS--ADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHD 149 (352)
T ss_dssp TSEEE---ET-TEEEECHHHHHHHSTTC--TTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTC
T ss_pred CCeEe---cC-CeeecCHHHHhhccCCC--hhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccC
Confidence 99995 43 7899999998 455554 67888887654 34678999999999998653 3322 123578
Q ss_pred chHHHHHHHHHHhcchhhHHHHHhhcCCCCC-cceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCCC------
Q 041256 163 SRFNDVFNNGMLSHTSIVMEKVLESYKGFEH-VKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPSY------ 235 (244)
Q Consensus 163 ~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~-~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~------ 235 (244)
|+..+.|..+|...... ...+++.++ +.+ ..+|||||||+|.++..+++++|+++++++|+|.+++.+++.
T Consensus 150 ~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~ 227 (352)
T 3mcz_A 150 TRARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDL 227 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCC
Confidence 99999999999983332 237888888 777 899999999999999999999999999999999999887641
Q ss_pred -CCceeec
Q 041256 236 -PGTLFIK 242 (244)
Q Consensus 236 -~~i~~~~ 242 (244)
++|+++.
T Consensus 228 ~~~v~~~~ 235 (352)
T 3mcz_A 228 GGRVEFFE 235 (352)
T ss_dssp GGGEEEEE
T ss_pred CCceEEEe
Confidence 2476654
No 17
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=98.75 E-value=9.2e-09 Score=90.87 Aligned_cols=159 Identities=10% Similarity=0.020 Sum_probs=95.1
Q ss_pred ChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcccc-ccccCCCCCC
Q 041256 37 DVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSA-YFVRNNQNGA 115 (244)
Q Consensus 37 gifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~-~l~~~~~~~~ 115 (244)
++|..| . +|.|+.|||..++++ +.. +.++|+.|.+.|+++. .+ + |++|+.+. ++...+ +.
T Consensus 47 ~ll~~L-~----~~~t~~eLa~~~g~~------~~~-v~~~L~~l~~~gll~~---~~-~-~~lt~~~~~~l~~~~--~~ 107 (373)
T 2qm3_A 47 NVLSAV-L----ASDDIWRIVDLSEEP------LPL-VVAILESLNELGYVTF---ED-G-VKLTEKGEELVAEYG--IG 107 (373)
T ss_dssp HHHHHH-H----HCSCHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEEC---SS-S-SEECHHHHHHHHHHT--CC
T ss_pred HHHHHh-c----CCCCHHHHHHHhCCC------hHH-HHHHHHHHhhCCcEEE---CC-C-EEECHHHHHHHHhcC--cc
Confidence 789999 5 589999999999997 667 9999999999999984 22 5 99999876 444322 11
Q ss_pred CHHHHHH-HhcC-h----hhhhhccchHHHHhcCCchhhhhhCCCchhhccCCchHHHHHHHHHHhcchhhHHHHHhhcC
Q 041256 116 SLSPYMA-LCLD-K----VCLDGWFGLKKQLLEGGIAFNKAHGMQIYDYLGVDSRFNDVFNNGMLSHTSIVMEKVLESYK 189 (244)
Q Consensus 116 ~~~~~~~-~~~~-~----~~~~~~~~l~~~l~~g~~~~~~~~g~~~~e~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~ 189 (244)
+..+.+. ...+ . .+...|..+.+.++....+. ..|+.....++ ......+ .... .+
T Consensus 108 ~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~l---------~~~~-~~ 169 (373)
T 2qm3_A 108 KRYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL------HEFDQAYVTPE--TTVARVI---------LMHT-RG 169 (373)
T ss_dssp CCCC------------CGGGHHHHHHHHHHHTTCCCCC------GGGTCCCBCHH--HHHHHHH---------HHHH-TT
T ss_pred ccccccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc------hhcCCeecCHH--HHHHHHH---------HHhh-cC
Confidence 1111110 0000 1 11112334444444321110 11111001111 1111111 0011 11
Q ss_pred CCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 190 GFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 190 ~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.....+|+||| |+|.++..+++..|+.+++.+|+ |.+++.+++
T Consensus 170 -~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~ 213 (373)
T 2qm3_A 170 -DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEK 213 (373)
T ss_dssp -CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHH
T ss_pred -CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 12458999999 99999999999999999999999 899998875
No 18
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=97.90 E-value=4.7e-06 Score=67.34 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=34.7
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|+|||||.|.++..+++++| +++.+|+ |..++.+++
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~ 78 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKARE 78 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHH
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHH
Confidence 367999999999999999999988 7888888 888877754
No 19
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=97.67 E-value=4.1e-05 Score=61.85 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=37.3
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|||||||+|.++..+++++|+.+++.+|. |..++.|++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~ 80 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQ 80 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHH
Confidence 457899999999999999999999999999998 777777653
No 20
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=97.66 E-value=9.6e-05 Score=61.35 Aligned_cols=57 Identities=11% Similarity=0.125 Sum_probs=46.1
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCCCCCceee
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPSYPGTLFI 241 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~~i~~~ 241 (244)
..+.+.++ .....+|||||||+|.++..+++ |+.+++.+|+ |..++.+++.++++++
T Consensus 24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~ 81 (261)
T 3ege_A 24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWF 81 (261)
T ss_dssp HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEE
T ss_pred HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEE
Confidence 34555555 56778999999999999999998 7889999999 7888888776666654
No 21
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=97.66 E-value=6.9e-05 Score=60.85 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=42.1
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+.+.++...+..+|||||||.|.++..+++++|+.+++.+|+ |..++.+++
T Consensus 34 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 86 (234)
T 3dtn_A 34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKN 86 (234)
T ss_dssp HHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHH
Confidence 3444444234568999999999999999999999999999999 878777654
No 22
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=97.63 E-value=6.2e-05 Score=59.99 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=43.5
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.++..++ .....+|+|||||+|.++..+++.+|..+++.+|. |..++.+++
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~ 82 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRD 82 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHH
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 4455555 66778999999999999999999999999999999 888887764
No 23
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=97.61 E-value=8.2e-05 Score=59.82 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=35.0
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhh
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIK 230 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~ 230 (244)
.....+|||||||.|.++..+++++|+.+++.+|+ |..++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~ 65 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRME 65 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGH
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence 45668999999999999999999999999999999 55344
No 24
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=97.61 E-value=5.8e-05 Score=60.74 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=37.8
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|+|||||.|.++..+++++|+.+++.+|. |..++.+++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~ 83 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALD 83 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHH
Confidence 457899999999999999999999999999998 888887754
No 25
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=97.60 E-value=5.9e-05 Score=61.34 Aligned_cols=49 Identities=10% Similarity=0.189 Sum_probs=40.6
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC------CCCceee
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS------YPGTLFI 241 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~~i~~~ 241 (244)
...+|||||||.|.++..+++++|+.+++.+|. |..++.+++ .++|+++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~ 89 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVM 89 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEE
Confidence 457999999999999999999999999999998 777766643 3456654
No 26
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=97.53 E-value=0.0001 Score=58.59 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=35.9
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+++.++......+|+|||||+|.++..+++++|+.+++.+|+ |..++.+++
T Consensus 20 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~ 72 (215)
T 4dzr_A 20 EAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARR 72 (215)
T ss_dssp HHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------
T ss_pred HHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH
Confidence 3444444225678999999999999999999999999999999 888888876
No 27
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=97.49 E-value=0.00011 Score=61.75 Aligned_cols=50 Identities=24% Similarity=0.428 Sum_probs=41.8
Q ss_pred CCcceEEEecCCc---cHHHHHHHHHCCCCeEEEccc-hHHhhhCCC----CCCceee
Q 041256 192 EHVKKLVDVGGGL---GITLNMIISKYPHIKGINYDL-PYVIKDAPS----YPGTLFI 241 (244)
Q Consensus 192 ~~~~~vvDVGGG~---G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~~i~~~ 241 (244)
.+..+|||||||. |.++..+.+.+|+.+++.+|+ |.+++.+++ .++|+++
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~ 133 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVF 133 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEE
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEE
Confidence 3458999999999 999888888999999999999 999988864 2456654
No 28
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=97.49 E-value=8e-05 Score=61.27 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=45.6
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC-CCCcee
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS-YPGTLF 240 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~~i~~ 240 (244)
.+++.++ .....+|+|||||.|.++..+++++|..+++.+|+ |..++.+++ .+++++
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 82 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNF 82 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEE
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEE
Confidence 4555555 56668999999999999999999999999999998 777777654 344544
No 29
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=97.46 E-value=9e-05 Score=62.80 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=37.8
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|||||||.|.++..+++++|..+++.+|+ |..++.|++
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~ 88 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQ 88 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHH
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 568999999999999999999999999999999 777877754
No 30
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=97.45 E-value=0.00013 Score=60.10 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=35.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDA 232 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 232 (244)
.+..+|||||||.|.++..+++++|+.+++.+|+ +..++.|
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A 86 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYV 86 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHH
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHH
Confidence 4557899999999999999999999999999998 6666644
No 31
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=97.45 E-value=9.1e-05 Score=57.26 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=42.4
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+++.++ .....+|+|||||.|.++..+++++|..+++.+|+ |..++.+++
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~ 67 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS 67 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHH
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH
Confidence 3444555 56668999999999999999999999999999999 777777763
No 32
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=97.44 E-value=5.2e-05 Score=61.95 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=42.7
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 181 MEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 181 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+++.++ .....+|+|||||.|.++..+++..| .+++.+|. |..++.+++
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~ 132 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKR 132 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHH
Confidence 345556665 66778999999999999999999998 88999996 788877764
No 33
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=97.44 E-value=0.00027 Score=56.31 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=43.2
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC--CCCceee
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS--YPGTLFI 241 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~--~~~i~~~ 241 (244)
..+++.+.......+|+|||||.|.++..++++ ..+++.+|+ |..++.+++ .++|+++
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 95 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFR 95 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEE
Confidence 344554443455679999999999999999999 668999998 888887765 2455543
No 34
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=97.42 E-value=0.00023 Score=60.66 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=46.7
Q ss_pred HHHHHHHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 168 VFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 168 ~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.|.. +..........+++.++.+....+|||||||.|.++..+++++ +.+++.+|+ |..++.+++
T Consensus 93 ~f~~-~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~ 158 (312)
T 3vc1_A 93 VIAE-LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNR 158 (312)
T ss_dssp HHHH-HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHH
T ss_pred HHhh-hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Confidence 4443 3333333334566665435667899999999999999999986 678999998 788877754
No 35
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=97.41 E-value=7.4e-05 Score=59.58 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=40.4
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++.++ .... +|||||||.|.++..++++ |+.+++.+|+ |..++.+++
T Consensus 34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~ 84 (219)
T 3dlc_A 34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALK 84 (219)
T ss_dssp HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHH
T ss_pred HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHH
Confidence 34455555 4444 9999999999999999999 8899999998 888877764
No 36
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00024 Score=60.08 Aligned_cols=43 Identities=35% Similarity=0.378 Sum_probs=38.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKY-PHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|||||||.|.++..+++++ |..+++.+|+ |..++.+++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~ 79 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEV 79 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH
Confidence 466899999999999999999997 9999999999 778877754
No 37
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=97.40 E-value=0.00029 Score=55.72 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=37.2
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCC--CCeEEEccchH
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYP--HIKGINYDLPY 227 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P--~l~~~v~Dlp~ 227 (244)
.+.+.|..+....+|+|||||+|.++..+++++| +.+++.+|+.+
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 58 (201)
T 2plw_A 12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI 58 (201)
T ss_dssp HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence 4555665345668999999999999999999998 68899999855
No 38
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=97.39 E-value=0.00019 Score=58.57 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=36.6
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccch-HHh
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLP-YVI 229 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi 229 (244)
..+.+.+. ....+|||||||.|.++..+++++|+.+++.+|+. +.+
T Consensus 15 ~~~~~~~~--~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~m 61 (225)
T 3p2e_A 15 DELTEIIG--QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENL 61 (225)
T ss_dssp HHHHHHHT--TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGG
T ss_pred HHHHHHhC--CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence 34444443 44579999999999999999999999999999994 444
No 39
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=97.39 E-value=0.00012 Score=63.06 Aligned_cols=41 Identities=15% Similarity=0.291 Sum_probs=37.8
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 194 VKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 194 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+|||||||.|.++..+++++|+.+.+++|+ |.+++.+++
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~ 131 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSRE 131 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHH
Confidence 34999999999999999999999999999999 999998874
No 40
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=97.37 E-value=0.00015 Score=60.35 Aligned_cols=44 Identities=18% Similarity=0.386 Sum_probs=39.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
+....+|||||||.|.++..+++++|+.+++.+|. |..++.+++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 79 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARE 79 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 56678999999999999999999999999999998 777777654
No 41
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=97.36 E-value=9.4e-05 Score=62.04 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=40.1
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISK-YPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.++..++ +....+|+|+|||.|.++..+++. +|..+++.+|+ |..++.+++
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~ 153 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMD 153 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHH
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHH
Confidence 4455555 667789999999999999999998 89999999999 888777653
No 42
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=97.35 E-value=0.00032 Score=57.23 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=37.1
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 184 VLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 184 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
+...++.+....+|||||||.|.++..++++ +.+++.+|+ |..++.+++
T Consensus 32 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~ 81 (240)
T 3dli_A 32 LRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEG 81 (240)
T ss_dssp HGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHT
T ss_pred HHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHh
Confidence 3333443456689999999999999999998 456888898 777777654
No 43
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=97.34 E-value=0.00014 Score=58.37 Aligned_cols=52 Identities=25% Similarity=0.295 Sum_probs=43.7
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKY-PHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++.++ .....+|||||||.|.++..+++.. |+.+++.+|. |..++.+++
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 80 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWE 80 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence 45566666 6777899999999999999999997 8899999998 787777754
No 44
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=97.33 E-value=0.0002 Score=58.88 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=36.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDA 232 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 232 (244)
+...+|||||||.|.++..+++.+|+.+++.+|. +.+++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a 89 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYV 89 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHH
Confidence 4568999999999999999999999999999997 6776655
No 45
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=97.33 E-value=0.00027 Score=58.04 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=43.2
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC---CCCceee
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS---YPGTLFI 241 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~---~~~i~~~ 241 (244)
.+.+.++ .....+|||||||.|.++..++++.+. +++.+|+ |..++.+++ .++|+++
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~ 95 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYE 95 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEE
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEE
Confidence 4455555 446689999999999999999999776 8899998 777777754 2345543
No 46
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=97.32 E-value=0.00017 Score=60.36 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=37.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHC--CCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKY--PHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~--P~l~~~v~Dl-p~vi~~a~~ 234 (244)
+...+|+|||||+|.++..+++++ |+++++.+|+ |..++.|++
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~ 114 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRR 114 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHH
Confidence 556899999999999999999985 6789999998 888887764
No 47
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=97.31 E-value=0.00021 Score=59.65 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=40.1
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCCCCCceee
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPSYPGTLFI 241 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~~i~~~ 241 (244)
...+|||||||+|.++..+++++. +++.+|+ |..++.|++.++|+++
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~~~v~~~ 86 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRHPRVTYA 86 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCCTTEEEE
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhcCCceee
Confidence 346899999999999999999875 5788898 7889999888888765
No 48
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=97.31 E-value=0.00017 Score=59.36 Aligned_cols=58 Identities=24% Similarity=0.377 Sum_probs=44.9
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCCC----CCceee
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPSY----PGTLFI 241 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~~i~~~ 241 (244)
..+++.++ .....+|||||||.|.++..+++++ +.+++.+|+ |..++.+++. ++|+++
T Consensus 45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~ 107 (266)
T 3ujc_A 45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFE 107 (266)
T ss_dssp HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEE
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEE
Confidence 34555555 6677899999999999999999998 789999998 7777776542 455543
No 49
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=97.31 E-value=0.00015 Score=59.98 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=40.7
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++.++ .....+|||||||.|.++..++++.+ +++.+|+ |..++.+++
T Consensus 27 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~ 77 (260)
T 1vl5_A 27 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARA 77 (260)
T ss_dssp HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHH
T ss_pred HHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHH
Confidence 45566666 56778999999999999999999987 7899998 777777653
No 50
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=97.30 E-value=0.00019 Score=59.62 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=40.2
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 184 VLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 184 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
+++.++......+|||||||.|.++..++++ |..+++.+|+ |..++.+++
T Consensus 37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~ 87 (267)
T 3kkz_A 37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNR 87 (267)
T ss_dssp HHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHH
T ss_pred HHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHH
Confidence 3444433456789999999999999999998 8899999999 777777654
No 51
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=97.30 E-value=0.00015 Score=58.24 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=37.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|||||||.|.++..+++++|..+++.+|+ |..++.+++
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 71 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQE 71 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHH
Confidence 4457999999999999999999999999999998 787777754
No 52
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=97.30 E-value=7.7e-05 Score=61.25 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=36.0
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|||||||.|..+..++++.|. +.+++|+ |.+++.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~ 101 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRD 101 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHH
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHH
Confidence 34589999999999999999988885 6788898 899998864
No 53
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=97.29 E-value=6.1e-05 Score=59.96 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=36.8
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 194 VKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 194 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+|+|||||+|.++..+++.+|+.+++.+|. |..++.+++
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 107 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQ 107 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 47999999999999999999999999999998 777777653
No 54
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=97.27 E-value=9.6e-05 Score=60.89 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=44.2
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISK-YPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..++..++ .....+|+|+|||+|.++..+++. .|..+++.+|+ |..++.|++
T Consensus 83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 136 (255)
T 3mb5_A 83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWE 136 (255)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHH
Confidence 34555666 667789999999999999999999 89999999999 788888764
No 55
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=97.26 E-value=0.00026 Score=54.62 Aligned_cols=49 Identities=18% Similarity=0.079 Sum_probs=39.7
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+++.++ .....+|+|||||.|.++..+++ +..+++.+|. |..++.+++
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~ 75 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQ 75 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHH
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHH
Confidence 3444455 55668999999999999999998 8889999998 777777764
No 56
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=97.25 E-value=0.00018 Score=59.65 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=38.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|+|||||+|..+..++..+|+.+++.+|. +..++.+++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~ 122 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVER 122 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999999999999997 777777654
No 57
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=97.24 E-value=0.00053 Score=55.70 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=40.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhC----CCCCCceee
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDA----PSYPGTLFI 241 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a----~~~~~i~~~ 241 (244)
+....+|+|||||+|.++..+++.+|..+++.+|. |..++.+ +..++|+++
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~ 127 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPI 127 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEE
Confidence 55668999999999999999999999888999998 6666543 334556553
No 58
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=97.23 E-value=0.00017 Score=57.84 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=38.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|||||||.|.++..+++++|..+++.+|+ |..++.+++
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 71 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKD 71 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHH
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 3457999999999999999999999999999998 788877764
No 59
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=97.20 E-value=0.0003 Score=56.20 Aligned_cols=48 Identities=6% Similarity=-0.006 Sum_probs=38.4
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 184 VLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 184 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
+++.+. .....+|+|||||+|..+..++++ +.+++.+|+ |..++.|++
T Consensus 14 ~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~ 62 (203)
T 1pjz_A 14 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFT 62 (203)
T ss_dssp HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHH
T ss_pred HHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHH
Confidence 344444 556689999999999999999997 568999998 788887753
No 60
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=97.19 E-value=0.00042 Score=56.22 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=38.7
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+...++ .....+|+|||||.|.++..++++.+ .+++.+|+ |..++.+++
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~ 84 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARA 84 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHH
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHH
Confidence 4555555 45668999999999999999998843 27888898 777777754
No 61
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=97.18 E-value=0.0003 Score=54.83 Aligned_cols=54 Identities=20% Similarity=0.366 Sum_probs=40.1
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC-CCCcee
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS-YPGTLF 240 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~~i~~ 240 (244)
.++..+ .....+|+|||||.|.++..+++. +.+++.+|. |..++.+++ .+++++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~ 93 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARW 93 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcE
Confidence 455555 356689999999999999999988 568888898 777776654 234443
No 62
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=97.18 E-value=0.00039 Score=57.04 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=41.5
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++.++ .....+|||||||.|.++..+++++ +.+++.+|+ |..++.+++
T Consensus 26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~ 77 (256)
T 1nkv_A 26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKR 77 (256)
T ss_dssp HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHH
Confidence 34555555 6677899999999999999999998 678999998 777777753
No 63
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=97.18 E-value=0.00019 Score=58.75 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=38.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
+....+|+|||||+|.++..++...|+.+++.+|. |..++.+++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~ 112 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEK 112 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence 34568999999999999999999999999999998 777777654
No 64
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=97.14 E-value=0.00032 Score=59.36 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=42.8
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++.++ .....+|||||||.|.++..+++++| .+++.+|+ |..++.+++
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~ 113 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKA 113 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHH
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHH
Confidence 35566666 66778999999999999999999988 89999999 788877764
No 65
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=97.14 E-value=0.00018 Score=59.19 Aligned_cols=51 Identities=12% Similarity=0.121 Sum_probs=43.3
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISK-YPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.++..++ +....+|||+|||.|.++..+++. .|..+++.+|. |..++.+++
T Consensus 87 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~ 139 (258)
T 2pwy_A 87 AMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAER 139 (258)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred HHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence 4566666 677789999999999999999999 78999999998 888777754
No 66
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=97.13 E-value=0.00059 Score=57.06 Aligned_cols=50 Identities=24% Similarity=0.323 Sum_probs=41.0
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+++.++ ....+|+|||||+|.++..+++.+|+.+++..|. |..++.+++
T Consensus 101 ~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~ 151 (276)
T 2b3t_A 101 QALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQR 151 (276)
T ss_dssp HHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHH
T ss_pred HHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 3444443 3457999999999999999999999999999998 788877764
No 67
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=97.13 E-value=0.00035 Score=58.68 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=40.6
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHhhhCCC
Q 041256 184 VLESYKGFEHVKKLVDVGGGLGITLNMIISKYPH-IKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 184 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~ 234 (244)
+++.+....+..+|||||||+|.++..+++.+|. .+++.+|+ |..++.+++
T Consensus 13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~ 65 (284)
T 3gu3_A 13 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE 65 (284)
T ss_dssp HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 3333322567799999999999999999999995 89999998 777766543
No 68
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=97.13 E-value=0.00033 Score=54.65 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=36.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.....+|+|||||+|.++..++++ ..+++.+|+ |..++.|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~ 62 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQ 62 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHH
Confidence 455689999999999999999988 788999998 888887764
No 69
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=97.11 E-value=0.00055 Score=56.15 Aligned_cols=51 Identities=20% Similarity=0.194 Sum_probs=40.6
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.++..+.......+|||||||.|.++..+++++|. +++.+|+ |..++.+++
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~ 87 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNE 87 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHH
Confidence 34444433556689999999999999999999997 8999998 777776653
No 70
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=97.11 E-value=0.00037 Score=56.89 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=40.7
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++..+ .....+|+|||||.|.++..+++..+ +++.+|+ |..++.+++
T Consensus 11 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~ 61 (239)
T 1xxl_A 11 GLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASS 61 (239)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHH
T ss_pred chHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHH
Confidence 45566666 67789999999999999999999986 7888898 777776653
No 71
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=97.10 E-value=0.00047 Score=57.60 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=42.2
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC-CCCcee
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS-YPGTLF 240 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~~i~~ 240 (244)
.+++.++ .....+|||||||.|.++..+++ |..+++.+|+ |..++.+++ .+++++
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~ 104 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHF 104 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCE
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEE
Confidence 4555555 56668999999999999999998 8889999998 777776654 244443
No 72
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=97.08 E-value=0.00025 Score=59.69 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=40.1
Q ss_pred HHHHhhc----CCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESY----KGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~----~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++.+ + +....+|||||||.|.++..+++++ +.+++.+|+ |..++.+++
T Consensus 68 ~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~ 123 (297)
T 2o57_A 68 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEE 123 (297)
T ss_dssp HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHH
Confidence 3455555 4 6677899999999999999999987 458999998 677766643
No 73
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=97.08 E-value=0.00048 Score=60.62 Aligned_cols=51 Identities=20% Similarity=0.271 Sum_probs=42.7
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+++.++ .....+|+|+|||.|.++..+++++|..+++.+|. |..++.+++
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~ 264 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRL 264 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHH
Confidence 3456665 34448999999999999999999999999999998 778877764
No 74
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=97.08 E-value=0.00023 Score=60.59 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=37.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+.++|+|||||.|..+..+++..|..+++.+|+ |.+++.|++
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~ 125 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQ 125 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHH
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999888889999998 888887754
No 75
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=97.07 E-value=0.00063 Score=52.59 Aligned_cols=42 Identities=10% Similarity=-0.053 Sum_probs=36.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|+|||||.|.++..++++ +..+++.+|+ |..++.+++
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~ 72 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQD 72 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHH
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHH
Confidence 45579999999999999999987 7778999999 888887764
No 76
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=97.07 E-value=0.00029 Score=58.49 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=37.2
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEccchH
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKY-PHIKGINYDLPY 227 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~ 227 (244)
.+++.++ .....+|+|||||.|.++..+++++ |+.+++.+|+..
T Consensus 34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~ 78 (275)
T 3bkx_A 34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIAS 78 (275)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSC
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCc
Confidence 4566666 6677899999999999999999996 889999999843
No 77
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=97.06 E-value=0.00044 Score=57.90 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=40.9
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++.++ .....+|||||||.|.++..++++++. +++.+|+ |..++.+++
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~ 105 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQ 105 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHH
Confidence 34556565 566789999999999999999988765 9999998 777777654
No 78
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=97.06 E-value=0.00016 Score=55.66 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=42.3
Q ss_pred HhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC-CCCceee
Q 041256 185 LESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS-YPGTLFI 241 (244)
Q Consensus 185 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~~i~~~ 241 (244)
++.++ .....+|+|||||.|.++..+++++. +++.+|+ |..++.+++ .++|+++
T Consensus 10 ~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~ 65 (170)
T 3i9f_A 10 LPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITL 65 (170)
T ss_dssp HHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEE
T ss_pred HHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEE
Confidence 44444 56678999999999999999999985 8899998 777777765 4566654
No 79
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=97.05 E-value=0.00055 Score=54.78 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=39.5
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 184 VLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 184 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
++..++ .....+|+|||||.|.++..++++ ..+++.+|+ |..++.|++
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~ 95 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQK 95 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 344455 566689999999999999999998 788999998 888887764
No 80
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=97.04 E-value=0.00019 Score=58.80 Aligned_cols=51 Identities=14% Similarity=0.211 Sum_probs=40.5
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++.++ .....+|||||||.|.++..++++. ..+++.+|. |..++.+++
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~ 134 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKR 134 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHH
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHH
Confidence 35566665 5567899999999999999999987 557889997 777777654
No 81
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=97.03 E-value=0.00056 Score=55.09 Aligned_cols=50 Identities=6% Similarity=0.029 Sum_probs=37.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hH----HhhhCCCCCCcee
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PY----VIKDAPSYPGTLF 240 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~----vi~~a~~~~~i~~ 240 (244)
.....+|+|||||+|.++..+++..|+-+++.+|+ |. .++.+++.++|.+
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~ 109 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIP 109 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEE
Confidence 45667999999999999999999998778999998 43 3344443444443
No 82
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=97.03 E-value=0.00037 Score=55.74 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=40.7
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCCCCCce
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPSYPGTL 239 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~~i~ 239 (244)
.+++.+. .....+|||||||.|.++..++++ +.+++.+|+ |..++.+++.+.++
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~ 97 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGE 97 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSC
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccc
Confidence 3444444 344589999999999999999998 568899998 77787776554443
No 83
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=97.02 E-value=0.00083 Score=55.64 Aligned_cols=50 Identities=12% Similarity=0.265 Sum_probs=41.4
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 233 (244)
..+++.++ .....+|||||||.|.++..+++++ +.+++.+|+ |..++.++
T Consensus 51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~ 101 (273)
T 3bus_A 51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQAN 101 (273)
T ss_dssp HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHH
Confidence 45666666 6677899999999999999999987 689999998 77776665
No 84
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=97.02 E-value=0.00026 Score=55.81 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=37.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKY-PHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.....+|+|+|||.|.++..+++++ |..+++.+|+ |..++.+++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~ 65 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTK 65 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 3455799999999999999999986 7889999998 788877764
No 85
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=97.02 E-value=0.00042 Score=55.51 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=38.6
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++.++ ....+|+|||||.|.++..+++. + .+++.+|. |..++.+++
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~ 72 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKE 72 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHT
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHH
Confidence 45566554 45689999999999999999998 5 88999998 666666543
No 86
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=97.01 E-value=0.00027 Score=57.09 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=37.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYP-HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+..+|+|||||.|..+..+++..| +.+++.+|. |..++.+++
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 112 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRP 112 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHH
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 4557999999999999999999988 789999998 888877764
No 87
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=97.01 E-value=0.00056 Score=58.41 Aligned_cols=52 Identities=27% Similarity=0.288 Sum_probs=43.7
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++.++ .....+|||+|||.|.++..+++++|+.+++.+|. |..++.|++
T Consensus 16 ~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~ 68 (301)
T 1m6y_A 16 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEE 68 (301)
T ss_dssp HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 44555555 55668999999999999999999999999999998 888888764
No 88
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.01 E-value=0.00041 Score=45.59 Aligned_cols=55 Identities=16% Similarity=0.372 Sum_probs=44.0
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecC
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t 101 (244)
+..|.+.|.+.+ .++|..|||+.+|++ ... +.+.|..|...|++.. ...+.|+++
T Consensus 12 ~~~IL~~L~~~~--~~~s~~eLA~~lgls------r~t-v~~~l~~L~~~G~I~~---~~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDG--GPVAIFQLVKKCQVP------KKT-LNQVLYRLKKEDRVSS---PSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHCSC------HHH-HHHHHHHHHHTTSEEE---EETTEEEEC
T ss_pred HHHHHHHHHHcC--CCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCcEec---CCCceEeeC
Confidence 456888887753 589999999999996 456 9999999999999874 234788764
No 89
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=97.00 E-value=0.00052 Score=58.44 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=41.6
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++.++ .....+|||||||.|.++..+++++ +.+++.+|+ |..++.+++
T Consensus 80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~ 131 (318)
T 2fk8_A 80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQ 131 (318)
T ss_dssp HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHH
Confidence 45566665 5667899999999999999999987 569999998 777777754
No 90
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=97.00 E-value=0.00053 Score=62.36 Aligned_cols=51 Identities=20% Similarity=0.109 Sum_probs=40.0
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~ 234 (244)
..+++.++ ..+..+|+|||||.|.++..+++ .|..+++.+|+...++.|++
T Consensus 148 ~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~ 198 (480)
T 3b3j_A 148 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEV 198 (480)
T ss_dssp HHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHH
T ss_pred HHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHH
Confidence 45566555 44568999999999999998877 68889999999777666653
No 91
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=97.00 E-value=0.00038 Score=55.59 Aligned_cols=43 Identities=23% Similarity=0.225 Sum_probs=38.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|+|+|||.|-++..++...|+.+.+..|. +..++.+++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~ 91 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSS 91 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH
Confidence 4568999999999999999999999999999998 788887764
No 92
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=96.99 E-value=0.00033 Score=57.02 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=39.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEccc-hH----HhhhCCCCCCceee
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKY-PHIKGINYDL-PY----VIKDAPSYPGTLFI 241 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~----vi~~a~~~~~i~~~ 241 (244)
+....+|+|||||+|.++..+++++ |+.+++.+|+ |. .++.+++.++|+++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~ 131 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPV 131 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEE
Confidence 4566899999999999999999997 7889999998 33 34444444555543
No 93
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=96.99 E-value=0.00046 Score=56.06 Aligned_cols=42 Identities=10% Similarity=0.232 Sum_probs=37.6
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|||||||.|..+..+++.+|+.+++.+|. |..++.+++
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~ 96 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHK 96 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 457999999999999999999999999999999 788877764
No 94
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=96.98 E-value=0.00084 Score=54.73 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=38.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC---CCCceee
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS---YPGTLFI 241 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~---~~~i~~~ 241 (244)
.....+|||||||+|.++..++++++ +++.+|. |..++.+++ ..+|+++
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~ 106 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYR 106 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEE
Confidence 34567899999999999999999999 6888888 778877754 2355554
No 95
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=96.98 E-value=0.00056 Score=58.26 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=39.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.....+|+|||||.|.++..++.+.|+.+++.+|+ |+.++.|++
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~ 164 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRK 164 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHH
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHH
Confidence 67779999999999988877778889999999999 899998875
No 96
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=96.97 E-value=0.0012 Score=51.85 Aligned_cols=45 Identities=18% Similarity=0.096 Sum_probs=36.2
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCC---------CeEEEccchH
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPH---------IKGINYDLPY 227 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~---------l~~~v~Dlp~ 227 (244)
.+.+.++.+....+|||||||.|.++..+++++|. .+++.+|+.+
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~ 65 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLH 65 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSC
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechh
Confidence 34445553456689999999999999999999875 7899999855
No 97
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=96.96 E-value=0.00061 Score=56.66 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=38.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.....+|||||||+|.++..+++++|+.+++.+|+ |..++.+++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~ 78 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARR 78 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHH
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH
Confidence 45568999999999999999999999999999999 777777653
No 98
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=96.95 E-value=0.00036 Score=57.09 Aligned_cols=43 Identities=14% Similarity=0.056 Sum_probs=38.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|+|||||+|.+++.+++.+|..+++..|. |..++.|++
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~ 57 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVK 57 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 3447999999999999999999999999999998 788888764
No 99
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.95 E-value=0.00052 Score=46.62 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=48.5
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchh-ccHHHHHHHHhhCCcccceeecCCceeecCcccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAA-MTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSA 105 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~-~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~ 105 (244)
.+-.|.+.|... ||.|+.+||+.+|++ +. . +++.|..|...|++..... +.-.|++|+.++
T Consensus 12 ~~~~IL~~Lk~~---g~~ta~eiA~~Lgit------~~~a-Vr~hL~~Le~eGlV~~~~~-gRP~w~LT~~g~ 73 (79)
T 1xmk_A 12 IKEKICDYLFNV---SDSSALNLAKNIGLT------KARD-INAVLIDMERQGDVYRQGT-TPPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHHHHCGG------GHHH-HHHHHHHHHHTTSEEEECS-SSCEEEECHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHcCCC------cHHH-HHHHHHHHHHCCCEEecCC-CCCCeEeCHhHH
Confidence 345677888886 699999999999997 55 6 9999999999999985322 223899988764
No 100
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=96.95 E-value=0.00072 Score=55.47 Aligned_cols=48 Identities=15% Similarity=-0.003 Sum_probs=39.3
Q ss_pred cceEEEecCCccHHHHHHHHH----CCCCeEEEccc-hHHhhhCCC-CCCceee
Q 041256 194 VKKLVDVGGGLGITLNMIISK----YPHIKGINYDL-PYVIKDAPS-YPGTLFI 241 (244)
Q Consensus 194 ~~~vvDVGGG~G~~~~~l~~~----~P~l~~~v~Dl-p~vi~~a~~-~~~i~~~ 241 (244)
..+|||||||+|..+..+++. +|+.+++.+|+ |..++.|+. .++|+++
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~ 135 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLH 135 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEE
Confidence 469999999999999999998 79999999998 777777754 2456554
No 101
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=96.94 E-value=0.00086 Score=55.87 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=42.5
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISK-YPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..++..++ .....+|+|||||+|.++..++++ .|..+++.+|. |..++.+++
T Consensus 89 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 142 (280)
T 1i9g_A 89 AQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARR 142 (280)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred HHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence 34556666 667789999999999999999996 68899999998 877776653
No 102
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=96.94 E-value=0.00047 Score=57.69 Aligned_cols=48 Identities=27% Similarity=0.353 Sum_probs=38.3
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.++..++ .+..+|||||||.|.++..++++ +.+++.+|+ |..++.+++
T Consensus 60 ~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~ 108 (285)
T 4htf_A 60 RVLAEMG--PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQ 108 (285)
T ss_dssp HHHHHTC--SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHhcC--CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 4455554 23579999999999999999998 678999998 778877764
No 103
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=96.92 E-value=0.00061 Score=54.49 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=37.7
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+++.++ .....+|||||||.|.++..++++ +.+++.+|. |..++.+++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~ 85 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKE 85 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHH
Confidence 3344443 345689999999999999999998 668999998 777776654
No 104
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=96.91 E-value=0.0005 Score=58.09 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=37.1
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|+|||||+|.++..+++. |+.+++.+|+ |..++.|++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~ 164 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARK 164 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999 9999999999 888888864
No 105
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=96.91 E-value=0.00034 Score=58.88 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=37.6
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..++|+|||||.|.++..+++++|..+++++|+ |.+++.+++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~ 117 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKK 117 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHH
Confidence 458999999999999999999888889999999 889888764
No 106
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=96.91 E-value=0.0012 Score=54.40 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=38.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC-CCCceee
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS-YPGTLFI 241 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~~i~~~ 241 (244)
.+..+|||||||.|.++..++++.+ +++.+|+ |..++.+++ .++|+++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~ 98 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLH 98 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEE
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEE
Confidence 3458999999999999999999865 6888898 888888765 3455544
No 107
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=96.91 E-value=0.00098 Score=54.68 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=34.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 233 (244)
.....+|+|||||.|.++..++++ +.+++.+|. |..++.++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~ 78 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFR 78 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 556789999999999999999987 567888998 67776654
No 108
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.91 E-value=0.0011 Score=45.23 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=47.1
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcccccccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYFVR 109 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 109 (244)
.+..|.+.|.+.+++.++|+.|||+++|++ ... +.+.|.-|...|++.... ..++.|...+....+..
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvs------r~t-V~~~L~~Le~~G~I~~~g-~~~~~W~i~~~~~~~~~ 78 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTP------KKE-INRVLYSLAKKGKLQKEA-GTPPLWKIAVSTQAWNQ 78 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEES-SSSCEEEEC--------
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEecC-CCCCeeEEeCcHHhccC
Confidence 455678888886433479999999999996 445 999999999999998632 23578888877665543
No 109
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=96.91 E-value=0.0012 Score=54.67 Aligned_cols=52 Identities=25% Similarity=0.405 Sum_probs=41.7
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPSY 235 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~ 235 (244)
..+++..+ .....+|+|||||.|.++..++++ +..+++.+|+ |..++.+++.
T Consensus 21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~ 73 (249)
T 3ftd_A 21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI 73 (249)
T ss_dssp HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS
T ss_pred HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc
Confidence 45566665 566689999999999999999987 5678899998 7777777654
No 110
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=96.89 E-value=0.00046 Score=56.28 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=38.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+..+|||||||.|..+..+++.+|+.+++.+|+ |..++.|++
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~ 113 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQ 113 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHH
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999999999999998 888887764
No 111
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=96.89 E-value=0.00038 Score=57.66 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=38.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+..+|+|||||+|.+++.+++..|..+++..|. |..++.|++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~ 63 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQK 63 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 3457999999999999999999999999999998 788888764
No 112
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=96.88 E-value=0.00052 Score=56.59 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=38.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYP-HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+..+|||||||.|..+..+++.+| +.+++.+|+ |..++.|++
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~ 106 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARE 106 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHH
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999998 899999999 888887764
No 113
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=96.88 E-value=0.00051 Score=59.51 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=42.2
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++.++ .....+|+|||||.|.++..+++++|+.+++.+|. |..++.+++
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~ 238 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRA 238 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHH
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 44566664 34457899999999999999999999999999999 667777654
No 114
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.87 E-value=0.0011 Score=46.50 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=49.6
Q ss_pred HHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcccc
Q 041256 28 AVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSA 105 (244)
Q Consensus 28 ~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~ 105 (244)
.++..-.++.|+..| . ++.|..|||+.++++ ... +.+.|+.|...|++.+ .. +.|++++.+.
T Consensus 26 ~~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~is------~~t-v~~~L~~L~~~Glv~~---~~-g~y~l~~~g~ 87 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D----KGRSEEEIMQTLSLS------KKQ-LDYHLKVLEAGFCIER---VG-ERWVVTDAGK 87 (96)
T ss_dssp HHHSCHHHHHHHHHH-H----TTCCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE---ET-TEEEECTTTC
T ss_pred HHhCCHHHHHHHHHH-c----CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEE---EC-CEEEECCCch
Confidence 344444567788888 5 689999999999997 455 9999999999999995 33 6899988754
No 115
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=96.87 E-value=0.0013 Score=54.16 Aligned_cols=50 Identities=10% Similarity=0.254 Sum_probs=39.5
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++..+ .....+|+|||||.|.++..++++. .+++.+|+ |..++.+++
T Consensus 20 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~ 70 (244)
T 1qam_A 20 DKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTEN 70 (244)
T ss_dssp HHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHH
T ss_pred HHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHH
Confidence 45566665 5666899999999999999999997 67888888 777766553
No 116
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=96.86 E-value=0.0011 Score=51.35 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=31.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhh
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKD 231 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~ 231 (244)
...+|+|||||+|.++..++++. +++.+|+ |..++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~ 59 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES 59 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc
Confidence 34699999999999999999988 8899998 666665
No 117
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=96.85 E-value=0.00078 Score=56.35 Aligned_cols=50 Identities=8% Similarity=0.083 Sum_probs=39.5
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++..+ .....+|+|||||+|.++..++++ ..+++.+|+ |..++.+++
T Consensus 35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~ 85 (261)
T 3iv6_A 35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAE 85 (261)
T ss_dssp HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHH
Confidence 34555565 666789999999999999999987 457889998 777777653
No 118
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=96.84 E-value=0.00044 Score=56.74 Aligned_cols=43 Identities=14% Similarity=0.015 Sum_probs=38.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+..+|+|||||+|.+++.+++..|..+++..|. |..++.|++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~ 63 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALK 63 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 3458999999999999999999999999999998 788888764
No 119
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=96.82 E-value=0.00066 Score=55.00 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=33.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|||||||.|.++..++++++ +++.+|+ |..++.+++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~ 82 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQG 82 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHH
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHH
Confidence 446899999999999999999988 5777787 677776654
No 120
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=96.81 E-value=0.00071 Score=59.51 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=37.2
Q ss_pred CcceEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKY-PHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|||||||+|.++..+++.+ |+.+++.+|+ |..++.+++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~ 126 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARK 126 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHH
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 45799999999999999999997 8999999999 778877764
No 121
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=96.81 E-value=0.0014 Score=51.86 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=35.8
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPY 227 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~ 227 (244)
..+.+.|..+....+|||+|||+|.++..++++ ..+++.+|+-+
T Consensus 14 ~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~ 57 (191)
T 3dou_A 14 EFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQE 57 (191)
T ss_dssp HHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSC
T ss_pred HHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccc
Confidence 456666664566789999999999999999988 77889999843
No 122
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=96.80 E-value=0.00049 Score=56.63 Aligned_cols=42 Identities=10% Similarity=0.146 Sum_probs=37.5
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|+|||||+|.++..+++++|+.+++.+|+ |..++.|++
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~ 107 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKK 107 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH
Confidence 457999999999999999999999999999998 888887764
No 123
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=96.80 E-value=0.0016 Score=50.49 Aligned_cols=43 Identities=16% Similarity=-0.026 Sum_probs=35.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.....+|+|+|||.|.++..+++ .+..+++.+|+ |..++.+++
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~ 85 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKE 85 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHH
T ss_pred hcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHH
Confidence 34557999999999999999887 56778999999 888887764
No 124
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=96.80 E-value=0.0015 Score=54.47 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=43.5
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISK-YPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..++..++ +....+|||+|||+|.++..++++ .|..+++.+|. |..++.+++
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~ 155 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAES 155 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence 34556666 667789999999999999999999 78999999998 888877764
No 125
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=96.80 E-value=0.0011 Score=52.86 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=41.0
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKY-PHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+++.+. .....+|+|||||.|.++..+++.. |+.+++.+|. |..++.+++
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~ 120 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAER 120 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence 3444454 5666899999999999999999988 7789999998 777777654
No 126
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=96.80 E-value=0.0013 Score=53.12 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=38.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHhh----hCCCCCCceee
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKY-PHIKGINYDL-PYVIK----DAPSYPGTLFI 241 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~----~a~~~~~i~~~ 241 (244)
+....+|+|+|||+|.++..++++. |+.+++.+|. |..++ .+++.++|+++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~ 127 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPI 127 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEE
Confidence 4566799999999999999999985 6788999998 54333 33334566553
No 127
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=96.78 E-value=0.00079 Score=54.43 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=38.4
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC-CCCceee
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS-YPGTLFI 241 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~~i~~~ 241 (244)
.+..+|+|||||.|.++..++++++ +++.+|+ |..++.+++ .++++++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~ 88 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLH 88 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEE
Confidence 4558999999999999999999987 7888998 888877764 3455543
No 128
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=96.78 E-value=0.00059 Score=58.21 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=38.0
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|+|||||.|.++..+++..|..+++.+|+ |.+++.+++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~ 137 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQ 137 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999888899999999 888887764
No 129
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=96.78 E-value=0.002 Score=51.20 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=39.4
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+++.++ .....+|+|||||.|.++..+++. ..+++.+|. |..++.+++
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~ 117 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARR 117 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHH
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHH
Confidence 3445555 567789999999999999999998 678899998 777777764
No 130
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=96.78 E-value=0.0015 Score=58.63 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=40.1
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDA 232 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 232 (244)
.+++.++ .....+|||||||.|.++..+++.+|..+++.+|+ |..++.|
T Consensus 233 ~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A 282 (433)
T 1u2z_A 233 DVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLT 282 (433)
T ss_dssp HHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHH
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 4455555 66778999999999999999999999889999998 5555555
No 131
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=96.78 E-value=0.0016 Score=57.95 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=41.2
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 233 (244)
..+++.++ .....+|+|||||.|.++..++..++.-+++.+|+ |..++.|+
T Consensus 163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr 214 (438)
T 3uwp_A 163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAE 214 (438)
T ss_dssp HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 34556566 67778999999999999999999998878999999 55665554
No 132
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.77 E-value=0.0011 Score=48.09 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=51.6
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhC--CCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccccccccC
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQI--PLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYFVRN 110 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~--~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~ 110 (244)
+..|++.|.+. |++|+.+||+.+ +++ +.. +.+-|+.|...|+++. .+.+.|++|+.+..+...
T Consensus 15 d~~IL~~L~~~---g~~s~~eLA~~l~~giS------~~a-Vs~rL~~Le~~GLV~~---~~rg~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 15 DDRILEIIHEE---GNGSPKELEDRDEIRIS------KSS-VSRRLKKLADHDLLQP---LANGVYVITEEGEAYLNG 79 (111)
T ss_dssp HHHHHHHHHHH---SCBCHHHHHTSTTCCSC------HHH-HHHHHHHHHHTTSEEE---CSTTCEEECHHHHHHHTT
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHhcCCC------HHH-HHHHHHHHHHCCCEEe---cCCceEEECchHHHHHHH
Confidence 45678888775 699999999999 887 567 9999999999999995 244689999998755444
No 133
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=96.77 E-value=0.0007 Score=57.15 Aligned_cols=50 Identities=8% Similarity=0.042 Sum_probs=39.1
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 181 MEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 181 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+++.++ . ...+|||||||.|.++..++++ +.+++.+|+ |..++.+++
T Consensus 72 ~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~ 122 (299)
T 3g2m_A 72 AREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRK 122 (299)
T ss_dssp HHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHH
T ss_pred HHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHH
Confidence 345566655 2 3349999999999999999998 567899998 788887764
No 134
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=96.76 E-value=0.00071 Score=54.42 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=37.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYP-HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|+|||||.|..+..+++++| +.+++.+|+ |..++.+++
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 101 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARS 101 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHH
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 4558999999999999999999999 789999998 888877753
No 135
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=96.76 E-value=0.0015 Score=51.06 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=39.0
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+++.++ .....+|+|||||.|.++..++++ +.+++.+|. |..++.+++
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~ 72 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVER 72 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHH
Confidence 4455555 455679999999999999999988 668999998 777777654
No 136
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=96.76 E-value=0.00082 Score=53.08 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=37.1
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC-CCCceee
Q 041256 194 VKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS-YPGTLFI 241 (244)
Q Consensus 194 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~~i~~~ 241 (244)
..+|||||||.|.++..++++ +.+++.+|+ |..++.+++ .++|+++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~ 89 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFH 89 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEE
Confidence 478999999999999999998 558899998 777777765 4555554
No 137
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=96.75 E-value=0.00088 Score=55.05 Aligned_cols=50 Identities=20% Similarity=0.088 Sum_probs=40.5
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHH--CCCCeEEEccc-hHHhhhCCC
Q 041256 184 VLESYKGFEHVKKLVDVGGGLGITLNMIISK--YPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 184 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~--~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
+++.++ -....+|+|+|||+|.++..+++. +|..+++.+|+ |..++.|++
T Consensus 43 ~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~ 95 (250)
T 1o9g_A 43 ALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAK 95 (250)
T ss_dssp HHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHH
T ss_pred HHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHH
Confidence 344443 235579999999999999999998 88889999999 888888763
No 138
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=96.75 E-value=0.0014 Score=50.78 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=39.8
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+++.++ .....+|+|||||.|.++..++++ ..+++.+|+ |..++.+++
T Consensus 43 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~ 92 (194)
T 1dus_A 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKE 92 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHH
T ss_pred HHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHH
Confidence 4455555 566689999999999999999998 778999998 777777654
No 139
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=96.74 E-value=0.00093 Score=54.03 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=38.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC-CCCceee
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS-YPGTLFI 241 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~~i~~~ 241 (244)
....+|+|||||+|.++..++++ +.+++.+|+ |..++.+++ .++|+++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~ 96 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVY 96 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEE
Confidence 44579999999999999999998 568999998 788877765 3555554
No 140
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=96.74 E-value=0.00059 Score=59.14 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=38.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...++|+|||||.|.++..++++.|..+++.+|+ |.+++.|++
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~ 162 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQ 162 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999988999999999 888888764
No 141
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=96.74 E-value=0.00085 Score=55.56 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=36.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|+|||||.|.++..+++++|+.+++.+|. |..++.+++
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 127 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAK 127 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence 3457999999999999999999999999999998 666666653
No 142
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=96.74 E-value=0.00081 Score=53.54 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=34.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
+....+|||||||.|.++..++++ +.+++.+|+ |..++.+++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~ 83 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASR 83 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHH
Confidence 445679999999999999999988 568899998 777776654
No 143
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=96.71 E-value=0.0013 Score=56.89 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=37.6
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~ 234 (244)
.+.+... ..+..+|+|||||+|.++..++++ +..+++.+|..+.++.+++
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~ 104 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMD 104 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHH
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHH
Confidence 3344444 455689999999999999999887 5568999998667776653
No 144
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=96.71 E-value=0.00083 Score=54.03 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=37.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYP-HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|||||||.|..+..+++++| +.+.+.+|. |..++.+++
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 107 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKE 107 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH
Confidence 457999999999999999999998 889999998 777777754
No 145
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=96.71 E-value=0.0008 Score=53.70 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=37.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYP-HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 234 (244)
+..+|||||||.|..+..+++..| +.+++.+|. |..++.+++
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 99 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARR 99 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 457999999999999999999998 889999998 788877764
No 146
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=96.70 E-value=0.00061 Score=58.69 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=37.6
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|+|||||.|.++..+++..|..+++.+|+ |.+++.+++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~ 158 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKI 158 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHH
Confidence 458999999999999999999888999999999 888888764
No 147
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=96.69 E-value=0.00064 Score=57.44 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=39.6
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCC--CeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPH--IKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--l~~~v~Dl-p~vi~~a~~ 234 (244)
.+++..+ .....+|+|||||.|.++..++++.+. .+++.+|+ |..++.+++
T Consensus 33 ~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~ 86 (279)
T 3uzu_A 33 AIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQ 86 (279)
T ss_dssp HHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHH
T ss_pred HHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHH
Confidence 4555555 566689999999999999999998765 55788887 677766654
No 148
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=96.69 E-value=0.00064 Score=57.40 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=38.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...++|+|||||.|..+..+++..|..+++++|+ |.+++.+++
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~ 120 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKI 120 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHH
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999888899999999 888887764
No 149
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=96.68 E-value=0.0027 Score=51.37 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=38.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCCC---CCceee
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPSY---PGTLFI 241 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---~~i~~~ 241 (244)
....+|||||||.|.++..++++ +.+++.+|+ |..++.+++. ++|+++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 103 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFI 103 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEE
Confidence 35579999999999999999998 568899998 7788777653 455543
No 150
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=96.68 E-value=0.00065 Score=57.75 Aligned_cols=42 Identities=31% Similarity=0.381 Sum_probs=37.4
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|+|||||.|.++..+++..|..+++.+|+ |.+++.+++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~ 132 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARK 132 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 447999999999999999999888899999999 888887764
No 151
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=96.68 E-value=0.0008 Score=53.32 Aligned_cols=42 Identities=10% Similarity=0.030 Sum_probs=35.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|+|||||.|.++..++++.+. +++.+|. |..++.+++
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~ 83 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQA 83 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHH
Confidence 45579999999999999999999776 8899998 777776653
No 152
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=96.66 E-value=0.00068 Score=58.12 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=37.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...++|+|||||.|.++..++++.|..+++.+|+ |.+++.+++
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~ 119 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKR 119 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 3458999999999999999999888899999999 888887753
No 153
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.66 E-value=0.0012 Score=55.55 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=47.3
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcccc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSA 105 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~ 105 (244)
+.|++.|.+.+ +++|+.|||+.+|++ ..- +.|+|+-|+..||+.++ .+++|++++...
T Consensus 33 l~IL~~l~~~~--~~ltl~eia~~lgl~------ksT-v~RlL~tL~~~G~v~~~---~~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGSP--RDLTAAELTRFLDLP------KSS-AHGLLAVMTELDLLARS---ADGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHCS--SCEEHHHHHHHHTCC--------C-HHHHHHHHHHTTSEEEC---TTSEEEECTHHH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEEC---CCCcEEehHHHH
Confidence 56888998864 589999999999996 345 99999999999999963 347899988754
No 154
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=96.65 E-value=0.0007 Score=57.85 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=38.4
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...++|+|||||.|.++..++++.|..+++.+|+ |.+++.+++
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~ 137 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKK 137 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999988899999999 888887764
No 155
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=96.65 E-value=0.004 Score=50.74 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=38.1
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.++.... .....+|+|||||+|.++..++++ +.+++.+|+ |..++.+++
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~ 81 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARR 81 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHH
Confidence 3444443 345689999999999999999987 568999998 777777653
No 156
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=96.64 E-value=0.00076 Score=57.90 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=38.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...++|+|||||.|..+..+++..|..+++.+|+ |.+++.|++
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~ 150 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKK 150 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHH
Confidence 3458999999999999999999888999999999 888888764
No 157
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=96.64 E-value=0.0014 Score=54.75 Aligned_cols=41 Identities=10% Similarity=-0.087 Sum_probs=36.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...++|+|||||.|.++..++++ + .+++..|+ |.+++.|++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~ 112 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFIS 112 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTT
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHH
Confidence 35589999999999999999998 8 89999998 899999876
No 158
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=96.62 E-value=0.00072 Score=56.98 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=36.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 233 (244)
..++|+|||||.|.++..++++ |..+++.+|+ |.+++.++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar 115 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSK 115 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHH
Confidence 4579999999999999999998 8889999999 88888765
No 159
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=96.62 E-value=0.0012 Score=50.42 Aligned_cols=40 Identities=13% Similarity=0.016 Sum_probs=34.7
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|+|+|||.|.++..++++.++ ++.+|+ |..++.+++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~ 81 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKE 81 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHH
Confidence 4578999999999999999999877 889998 788877764
No 160
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=96.61 E-value=0.0018 Score=55.33 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=41.0
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYP-HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+++..+ .....+|+|||||.|.++..+++..+ +.+++.+|+ |+.++.+++
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~ 118 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR 118 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 4445555 56668999999999999999999988 488999998 777777764
No 161
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=96.60 E-value=0.0013 Score=54.12 Aligned_cols=50 Identities=8% Similarity=0.216 Sum_probs=41.0
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++..+ .....+|+|||||.|.++..++++. .+++.+|+ |..++.+++
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~ 69 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSE 69 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSC
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHH
Confidence 45566666 5667899999999999999999986 78899998 777777765
No 162
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=96.59 E-value=0.0011 Score=57.58 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=37.1
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAP 233 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~ 233 (244)
.+.+.+. ..+..+|||||||.|.++..++++ +..+++.+|..+.++.++
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~ 89 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAE 89 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHH
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHH
Confidence 4455554 445689999999999999988875 667899999865655554
No 163
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=96.58 E-value=0.0018 Score=53.59 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=37.5
Q ss_pred CC-CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 191 FE-HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.. ...+|+|||||+|.++..++++.+. +++.+|+ |..++.|++
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~ 90 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKR 90 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHH
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHH
Confidence 55 6789999999999999999999887 8999998 788877754
No 164
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=96.58 E-value=0.0016 Score=54.55 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=33.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 233 (244)
....+|||||||+|.++..++++.+ +++.+|+ |..++.++
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~ 96 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYAL 96 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHH
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHH
Confidence 4557999999999999999999854 8899998 67777664
No 165
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=96.58 E-value=0.0016 Score=56.49 Aligned_cols=52 Identities=17% Similarity=0.024 Sum_probs=44.3
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKY-PHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..++.... |....+|+|+|||+|.+++.++... |+.+++..|. |..++.|++
T Consensus 193 ~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~ 246 (354)
T 3tma_A 193 QALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLARE 246 (354)
T ss_dssp HHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHH
T ss_pred HHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHH
Confidence 34555555 7778899999999999999999998 9999999998 888888764
No 166
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=96.57 E-value=0.0013 Score=52.90 Aligned_cols=43 Identities=7% Similarity=0.077 Sum_probs=37.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYP-HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+..+|||||||.|..+..++++.| +.+++.+|+ |..++.|++
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 101 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQ 101 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHH
Confidence 3558999999999999999999875 889999998 888887764
No 167
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=96.56 E-value=0.0021 Score=52.36 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=37.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYP-HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|+|||||.|..+..+++.+| ..+++.+|. |..++.+++
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 103 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARK 103 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHH
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 3457999999999999999999998 789999998 888877764
No 168
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=96.55 E-value=0.0016 Score=53.90 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=35.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|+|||||+|.++..+++..+ +++..|. |..++.+++
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~ 160 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEA 160 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHH
Confidence 4557999999999999999999877 8899998 888877764
No 169
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.55 E-value=0.0016 Score=43.98 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=46.7
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~ 102 (244)
.+..|++.|.+.+++.++|+.|||+++|++ ... +.+.|+-|...|++.... ..++.|..++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs------~~t-V~~~L~~L~~~G~I~~~g-~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGTP------KKE-INRVLYSLAKKGKLQKEA-GTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCCC------HHH-HHHHHHHHHHHTSEEEEC-SSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEecC-CCCCceEecC
Confidence 356688888886433489999999999996 445 999999999999998632 2356777665
No 170
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=96.52 E-value=0.0027 Score=49.06 Aligned_cols=48 Identities=19% Similarity=0.127 Sum_probs=38.8
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 184 VLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 184 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
+++.++ .....+|+|+|||.|.++..+++.. .+++.+|. |..++.+++
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~ 73 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEM 73 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHH
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHH
Confidence 344445 5666899999999999999999988 78899998 777777654
No 171
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=96.51 E-value=0.0017 Score=51.20 Aligned_cols=48 Identities=23% Similarity=0.231 Sum_probs=37.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCCC-CCcee
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPSY-PGTLF 240 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~~i~~ 240 (244)
....+|+|+|||.|.++..+++. +..+++.+|+ |..++.+++. +++++
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~ 99 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNF 99 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEE
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEE
Confidence 45579999999999999999887 5567999998 8888877642 24444
No 172
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=96.49 E-value=0.0015 Score=53.96 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=37.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYP-HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+.++|||||||.|..+..+++..| +.+++.+|. |..++.+++
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~ 122 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLP 122 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHH
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 3457999999999999999999998 789999998 777777764
No 173
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=96.49 E-value=0.0026 Score=51.40 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=33.2
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|||||||.|.++..++++ .+++.+|+ |..++.+++
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~ 72 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQE 72 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHH
Confidence 3479999999999999999887 78999998 777777654
No 174
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=96.48 E-value=0.0023 Score=50.07 Aligned_cols=41 Identities=10% Similarity=-0.062 Sum_probs=34.3
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|+|+|||+|.++..++++ +..+++.+|+ |..++.+++
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~ 85 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIAR 85 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHH
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHH
Confidence 4478999999999999987774 6668999998 888888764
No 175
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=96.47 E-value=0.0012 Score=53.72 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=33.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|||||||+|.++..+++..+. +++.+|+ |..++.|++
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~ 101 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRD 101 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHHH
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCC-eEEEEcCCHHHHHHHHH
Confidence 34579999999999999999665554 7899998 777777764
No 176
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=96.47 E-value=0.0036 Score=53.24 Aligned_cols=57 Identities=19% Similarity=0.220 Sum_probs=42.2
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC----CCCceee
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS----YPGTLFI 241 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~~i~~~ 241 (244)
..+++..+ .....+|+|||||.|.++..++++ .-+++.+|+ |..++.+++ .++++++
T Consensus 40 ~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi 101 (295)
T 3gru_A 40 NKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEII 101 (295)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEE
T ss_pred HHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEE
Confidence 45566665 566689999999999999999998 457888887 666666653 2455543
No 177
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=96.47 E-value=0.0043 Score=47.05 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=35.9
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEccchH
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKY-PHIKGINYDLPY 227 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~ 227 (244)
.+++.+.......+|+|||||.|.++..+++++ |+.+++..|+..
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~ 57 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP 57 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc
Confidence 445555424556799999999999999999995 788999999855
No 178
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=96.47 E-value=0.0017 Score=54.42 Aligned_cols=44 Identities=11% Similarity=-0.029 Sum_probs=39.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
+.+..+|+|+|||.|.++..++++.+..+++.+|+ |..++.+++
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~ 161 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCE 161 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHH
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence 45668999999999999999999999889999999 888888764
No 179
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=96.46 E-value=0.002 Score=51.36 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=34.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.....+|||||||.|.++..++++. .+++.+|. |..++.+++
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~ 91 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQ 91 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHH
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHH
Confidence 4566899999999999999999986 37888998 777777654
No 180
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=96.44 E-value=0.0017 Score=57.51 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=41.3
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCCC
Q 041256 181 MEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPSY 235 (244)
Q Consensus 181 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~ 235 (244)
...+++.++ .....+|||||||.|.++..++++. .+++.+|+ +..++.+++.
T Consensus 96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~ 148 (416)
T 4e2x_A 96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREK 148 (416)
T ss_dssp HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTT
T ss_pred HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHc
Confidence 345666666 6677899999999999999999874 48899998 6777777653
No 181
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=96.43 E-value=0.0028 Score=54.52 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=41.6
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISK-YPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.++..++ .....+|||||||+|.++..+++. .|+.+++.+|+ |..++.|++
T Consensus 96 ~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~ 148 (336)
T 2b25_A 96 MILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK 148 (336)
T ss_dssp HHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Confidence 4555555 566789999999999999999998 58899999998 777776653
No 182
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=96.43 E-value=0.0016 Score=51.75 Aligned_cols=40 Identities=18% Similarity=0.017 Sum_probs=33.3
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 194 VKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 194 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+|||+|||+|.++..++++.+ .+++.+|+ |..++.+++
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~ 94 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKK 94 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHH
T ss_pred CCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHH
Confidence 36899999999999999887754 57899998 788887764
No 183
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=96.42 E-value=0.0012 Score=54.42 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=36.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYP-HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+.++|||||||.|..+..+++..| +.+++.+|+ |+.++.|++
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~ 103 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHP 103 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHH
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 3457999999999999999999997 789999998 777777654
No 184
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=96.41 E-value=0.0028 Score=53.80 Aligned_cols=64 Identities=23% Similarity=0.151 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcchhhHHHHHhhcC-CCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCC
Q 041256 166 NDVFNNGMLSHTSIVMEKVLESYK-GFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 166 ~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 233 (244)
.+.|++++...- ...+++.+. ......+|+|||||.|.++..+++ .+..+.+..|+ |..++.++
T Consensus 9 lr~~~~~~k~~l---~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~ 74 (313)
T 3bgv_A 9 LRNFNNWMKSVL---IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQ 74 (313)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHH
T ss_pred hhhccHHHHHHH---HHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHH
Confidence 456777766522 223333222 023567999999999999999988 46778999998 66666654
No 185
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=96.40 E-value=0.00096 Score=56.55 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=38.3
Q ss_pred CCCcceEEEecCCccHHHHHHH-HHCCCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMII-SKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~-~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.....+|+|||||.|.++..++ ..+|+.+++.+|+ |..++.+++
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~ 161 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATR 161 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHH
Confidence 4566899999999999999996 7899999999999 888887764
No 186
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.38 E-value=0.0038 Score=44.01 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=40.2
Q ss_pred HHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 29 VMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 29 ~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
+|.--.++.|+..|.+ ++.|+.|||+.+|++ ... +.+-|+.|...|++..
T Consensus 19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~is------~~t-vs~~L~~L~~~Glv~~ 68 (102)
T 3pqk_A 19 TLSHPVRLMLVCTLVE----GEFSVGELEQQIGIG------QPT-LSQQLGVLRESGIVET 68 (102)
T ss_dssp HHCSHHHHHHHHHHHT----CCBCHHHHHHHHTCC------TTH-HHHHHHHHHHTTSEEE
T ss_pred HcCCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCeEE
Confidence 3334455667777865 689999999999997 345 9999999999999985
No 187
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=96.38 E-value=0.0018 Score=53.97 Aligned_cols=50 Identities=12% Similarity=0.228 Sum_probs=39.1
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++..+ .....+|+|||||.|.++..++++. .+++.+|+ |..++.+++
T Consensus 19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~ 69 (255)
T 3tqs_A 19 QKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQK 69 (255)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHH
T ss_pred HHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHH
Confidence 34566665 5667899999999999999999986 57888887 777776653
No 188
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=96.37 E-value=0.003 Score=52.46 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=37.9
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++..+ .....+|+|||||.|.++. + ++.+..+++.+|+ |..++.+++
T Consensus 11 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l-~~~~~~~v~avEid~~~~~~a~~ 61 (252)
T 1qyr_A 11 DSIVSAIN-PQKGQAMVEIGPGLAALTE-P-VGERLDQLTVIELDRDLAARLQT 61 (252)
T ss_dssp HHHHHHHC-CCTTCCEEEECCTTTTTHH-H-HHTTCSCEEEECCCHHHHHHHHT
T ss_pred HHHHHhcC-CCCcCEEEEECCCCcHHHH-h-hhCCCCeEEEEECCHHHHHHHHH
Confidence 45566665 5666799999999999999 5 4555545888998 788877765
No 189
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=96.36 E-value=0.0023 Score=50.64 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=35.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|+|||||.|.++..+++ +|..+++.+|. |..++.+++
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~ 101 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEE 101 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHH
Confidence 4557999999999999999775 67789999998 788877764
No 190
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=96.36 E-value=0.0047 Score=49.72 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=39.0
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+++.++ .....+|+|||||.|.++..+++.. .+++.+|. |..++.+++
T Consensus 61 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~ 110 (231)
T 1vbf_A 61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASK 110 (231)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHH
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHH
Confidence 4455555 5666899999999999999999987 67888887 777777654
No 191
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=96.36 E-value=0.0022 Score=52.47 Aligned_cols=43 Identities=21% Similarity=0.132 Sum_probs=37.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYP-HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+.++|||||||.|..+..++++.| +.+.+.+|. |..++.+++
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~ 113 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLP 113 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHH
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 4567999999999999999999988 789999999 888877764
No 192
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=96.31 E-value=0.0021 Score=52.74 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=41.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHHhhhC----CCCCCceee
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISK-YPHIKGINYDL-PYVIKDA----PSYPGTLFI 241 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a----~~~~~i~~~ 241 (244)
++...+|+|+|||+|.++..+++. -|+=+++.+|. |+.++.+ ++.++|.++
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V 131 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPI 131 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEE
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEE
Confidence 567799999999999999999998 49989999998 6666554 345666655
No 193
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=96.28 E-value=0.0029 Score=50.73 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=34.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|||||||.|.++..++++ +.+++.+|+ |..++.+++
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~ 70 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAET 70 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHH
Confidence 45579999999999999999998 668999998 777776653
No 194
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.27 E-value=0.003 Score=43.95 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=39.8
Q ss_pred HHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 33 VVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 33 a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
-.++.|+..|.+. ++.|..|||+.+|++ +.. +.+.|+.|...|++...
T Consensus 24 ~~~~~il~~l~~~---~~~s~~ela~~l~is------~~t-vs~~l~~L~~~glv~~~ 71 (99)
T 3cuo_A 24 PKRLLILCMLSGS---PGTSAGELTRITGLS------ASA-TSQHLARMRDEGLIDSQ 71 (99)
T ss_dssp HHHHHHHHHHTTC---CSEEHHHHHHHHCCC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHhC---CCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEEE
Confidence 4556677788663 589999999999997 456 99999999999999863
No 195
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=96.27 E-value=0.0022 Score=51.96 Aligned_cols=40 Identities=10% Similarity=0.043 Sum_probs=35.1
Q ss_pred ceEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHhhhCCC
Q 041256 195 KKLVDVGGGLGITLNMIISKYP-HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 195 ~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+|||||||.|..+..++++.| +.+++.+|+ |+.++.|++
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 99 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKA 99 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHH
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 4999999999999999999986 889999998 777777754
No 196
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.27 E-value=0.0026 Score=44.57 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=45.7
Q ss_pred HHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCc
Q 041256 29 VMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (244)
Q Consensus 29 ~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~ 102 (244)
+|.--.++.|+..|.+ ++.|+.|||+.+|++ ... +.+.|+.|...|++........-.|++++
T Consensus 19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~is------~~t-vs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (98)
T 3jth_A 19 AMANERRLQILCMLHN----QELSVGELCAKLQLS------QSA-LSQHLAWLRRDGLVTTRKEAQTVYYTLKS 81 (98)
T ss_dssp HHCSHHHHHHHHHTTT----SCEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEECCTTCCEEEECC
T ss_pred HcCCHHHHHHHHHHhc----CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCeEEEEeCCEEEEEECH
Confidence 3444456677888876 589999999999997 455 99999999999999863211122355544
No 197
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=96.25 E-value=0.0036 Score=52.63 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=30.8
Q ss_pred CcceEEEecCCccHHHH----HHHHHCCCCeE--EEccc-hHHhhhCC
Q 041256 193 HVKKLVDVGGGLGITLN----MIISKYPHIKG--INYDL-PYVIKDAP 233 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~----~l~~~~P~l~~--~v~Dl-p~vi~~a~ 233 (244)
...+|||||||+|.++. .++.++|+.++ +..|. ++.++.++
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~ 99 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYK 99 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHH
Confidence 45799999999997544 55667899854 99997 66666554
No 198
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.24 E-value=0.0033 Score=45.78 Aligned_cols=65 Identities=9% Similarity=0.113 Sum_probs=48.2
Q ss_pred HHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcc
Q 041256 28 AVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPV 103 (244)
Q Consensus 28 ~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~ 103 (244)
.+|.--.++.|+..|.+ +|.|+.|||+.+|++ ... +.+.|+.|...|++........-.|++++.
T Consensus 13 ~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~is------~~t-vs~hL~~L~~~GlV~~~~~gr~~~y~l~~~ 77 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR----GPATVSELAKPFDMA------LPS-FMKHIHFLEDSGWIRTHKQGRVRTCAIEKE 77 (118)
T ss_dssp HHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCSC------HHH-HHHHHHHHHHTTSEEEEEETTEEEEEECSH
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCcC------HHH-HHHHHHHHHHCCCeEEEecCCEEEEEECHH
Confidence 44455567778888875 699999999999997 455 999999999999998642211234666553
No 199
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=96.23 E-value=0.002 Score=52.48 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=35.1
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|||||||.|.++..+++++ ..+++.+|+ |..++.+++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~ 120 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKT 120 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHH
Confidence 46899999999999999999987 568899998 777777654
No 200
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.22 E-value=0.0046 Score=45.28 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=43.4
Q ss_pred HHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 27 PAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 27 ~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
..+|.--.++.|+..|... ++.|+.|||+.+|++ ... +.+.|+.|...|++..
T Consensus 36 ~~al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~is------~st-vs~~L~~L~~~Glv~~ 88 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD---EELCVCDIANILGVT------IAN-ASHHLRTLYKQGVVNF 88 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE
T ss_pred HHHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCeEE
Confidence 3444445677889999854 689999999999997 456 9999999999999985
No 201
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=96.21 E-value=0.0031 Score=51.29 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=36.5
Q ss_pred CcceEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYP-HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 234 (244)
+..+|||||||.|..+..+++..| +.+.+.+|. |..++.|++
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~ 115 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKK 115 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 457999999999999999999998 789999998 777777654
No 202
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=96.21 E-value=0.0019 Score=56.07 Aligned_cols=41 Identities=24% Similarity=0.219 Sum_probs=34.5
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~ 234 (244)
+..+|||||||.|.++..++++ +..+++.+|..+.++.|++
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~ 106 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVK 106 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHH
T ss_pred CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHH
Confidence 4579999999999999999988 7778999999767776653
No 203
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=96.19 E-value=0.003 Score=52.71 Aligned_cols=49 Identities=18% Similarity=0.136 Sum_probs=38.1
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+++.++ .....+|||||||.|.++..++++ +.+++.+|. |..++.+++
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~ 160 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNE 160 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHH
Confidence 4444444 345689999999999999999998 568999998 777777654
No 204
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=96.19 E-value=0.003 Score=51.99 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=46.6
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcccc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSA 105 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~ 105 (244)
+.|++.|.+.+ +++|+.|||+.+|++ ..- +.|+|+.|...|++.+++ ..++|++++...
T Consensus 9 l~iL~~l~~~~--~~~s~~ela~~~gl~------~st-v~r~l~~L~~~G~v~~~~--~~~~Y~lg~~~~ 67 (241)
T 2xrn_A 9 ASIMRALGSHP--HGLSLAAIAQLVGLP------RST-VQRIINALEEEFLVEALG--PAGGFRLGPALG 67 (241)
T ss_dssp HHHHHHHHTCT--TCEEHHHHHHHTTSC------HHH-HHHHHHHHHTTTSEEECG--GGCEEEECSHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEEeC--CCCeEEECHHHH
Confidence 45677787653 479999999999996 445 999999999999999632 237899987654
No 205
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=96.17 E-value=0.006 Score=48.97 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=37.0
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-----CCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKY-----PHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~-----P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.....+|+|||||.|.++..+++.. |+.+++.+|. |..++.+++
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~ 127 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE 127 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHH
Confidence 4556899999999999999999986 6789999998 777777654
No 206
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=96.17 E-value=0.0079 Score=48.78 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=39.6
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.++...+ .....+|+|+|||.|.++..++++ ..+++.+|. |..++.+++
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~ 131 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQK 131 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHH
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHH
Confidence 4455555 566789999999999999999999 778999997 777776654
No 207
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=96.16 E-value=0.0047 Score=52.05 Aligned_cols=49 Identities=16% Similarity=0.350 Sum_probs=38.6
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 233 (244)
..+++.++ .....+|+|||||.|.++..++++.. +++.+|+ |..++.++
T Consensus 18 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~ 67 (285)
T 1zq9_A 18 NSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELH 67 (285)
T ss_dssp HHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHH
T ss_pred HHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHH
Confidence 45566666 56678999999999999999999864 6788887 66666654
No 208
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=96.09 E-value=0.0042 Score=52.12 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=37.1
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++..+ .... +|+|||||.|.++..++++. .+++.+|+ |..++.+++
T Consensus 37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~ 86 (271)
T 3fut_A 37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEE 86 (271)
T ss_dssp HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHH
T ss_pred HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHH
Confidence 34566555 5555 99999999999999999986 46777777 666666543
No 209
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.08 E-value=0.0055 Score=43.85 Aligned_cols=59 Identities=12% Similarity=0.235 Sum_probs=43.2
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPV 103 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~ 103 (244)
.++.|+..|.. ++.|..|||+.+|++ +.. +.+.|+.|...|++..........|++|+.
T Consensus 22 ~r~~IL~~L~~----~~~~~~ela~~l~is------~~t-v~~~l~~L~~~gli~~~~~gr~~~y~l~~~ 80 (114)
T 2oqg_A 22 TRWEILTELGR----ADQSASSLATRLPVS------RQA-IAKHLNALQACGLVESVKVGREIRYRALGA 80 (114)
T ss_dssp HHHHHHHHHHH----SCBCHHHHHHHSSSC------HHH-HHHHHHHHHHTTSEEEEEETTEEEEEECSH
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCeeEEecCCEEEEEechH
Confidence 45667777844 689999999999997 456 999999999999998532111123666554
No 210
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.08 E-value=0.0064 Score=50.15 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=46.2
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVS 104 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s 104 (244)
+.|++.|.+.+ +++|+.|||+.+|++ ..- +.|+|+.|...|++.++ ..+.|++++..
T Consensus 11 l~iL~~l~~~~--~~~~~~ela~~~gl~------~st-v~r~l~~L~~~G~v~~~---~~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNP--GDVSVSEIAEKFNMS------VSN-AYKYMVVLEEKGFVLRK---KDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCS--SCBCHHHHHHHTTCC------HHH-HHHHHHHHHHTTSEEEC---TTSCEEECTHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCcEEEC---CCCcEEECHHH
Confidence 45677887653 479999999999996 445 99999999999999962 35789998754
No 211
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=96.08 E-value=0.0028 Score=51.29 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=32.6
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 195 KKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 195 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+|||||||.|.++..+++ ++.+++.+|+ |..++.+++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~ 106 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANE 106 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHH
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHH
Confidence 5999999999999999976 6778999998 777877754
No 212
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=96.06 E-value=0.0079 Score=53.02 Aligned_cols=48 Identities=6% Similarity=0.065 Sum_probs=37.4
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHhhhC
Q 041256 184 VLESYKGFEHVKKLVDVGGGLGITLNMIISKY-PHIKGINYDL-PYVIKDA 232 (244)
Q Consensus 184 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a 232 (244)
+++.++ .....+|+|+|||+|.++..+++++ +..+.+.+|+ |..++.|
T Consensus 31 ~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a 80 (421)
T 2ih2_A 31 MVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP 80 (421)
T ss_dssp HHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC
T ss_pred HHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC
Confidence 344444 3344699999999999999999988 7788999998 6666655
No 213
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=96.06 E-value=0.0017 Score=54.12 Aligned_cols=59 Identities=15% Similarity=0.286 Sum_probs=46.3
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcccc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSA 105 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~ 105 (244)
+.|++.|.+.+ +++|+.|||+++|++ ..- +.|+|+-|+..||+.++ .+.++|++++...
T Consensus 9 l~IL~~l~~~~--~~lsl~eia~~lgl~------ksT-~~RlL~tL~~~G~v~~~--~~~~~Y~lG~~~~ 67 (260)
T 3r4k_A 9 LTLLTYFNHGR--LEIGLSDLTRLSGMN------KAT-VYRLMSELQEAGFVEQV--EGARSYRLGPQVL 67 (260)
T ss_dssp HHHHTTCBTTB--SEEEHHHHHHHHCSC------HHH-HHHHHHHHHHTTSEEEC--SSSSEEEECTTHH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEEc--CCCCcEEcCHHHH
Confidence 34667776543 689999999999996 445 99999999999999963 2237899988643
No 214
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=96.05 E-value=0.0072 Score=51.23 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=34.8
Q ss_pred HHHhhcCCCC-CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhh
Q 041256 183 KVLESYKGFE-HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKD 231 (244)
Q Consensus 183 ~~~~~~~~~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~ 231 (244)
.+++.+. .. ...+++|||||+|.++..++++ +.-+++.+|. |..++.
T Consensus 75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~ 123 (291)
T 3hp7_A 75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVW 123 (291)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCH
T ss_pred HHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHH
Confidence 4455665 43 4579999999999999988886 5568899998 444443
No 215
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=96.04 E-value=0.011 Score=48.34 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=35.0
Q ss_pred HHHhhcCCCC-CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhC
Q 041256 183 KVLESYKGFE-HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDA 232 (244)
Q Consensus 183 ~~~~~~~~~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a 232 (244)
.+++.++ .. ...+|+|||||+|.++..++++ ...+++.+|+ |..++.+
T Consensus 27 ~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a 76 (232)
T 3opn_A 27 KALKEFH-LEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWK 76 (232)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHH
T ss_pred HHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHH
Confidence 4455555 33 4579999999999999999988 3348999998 5555543
No 216
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=96.00 E-value=0.0082 Score=44.24 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=36.2
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecC-CceeecCc
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDG-QRLYSLAP 102 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~-~~~y~~t~ 102 (244)
++.|..+||+.++++ +.. ++++|+.|...|++... .+ .|.|.++.
T Consensus 25 ~~~s~~ela~~~~i~------~~~-v~~il~~L~~~Glv~~~--~g~~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNLS------EHY-LEQLVSPLRNAGLVKSI--RGAYGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTSC------HHH-HHHHHHHHHHTTSEEEC------CCEEESS
T ss_pred CcCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCceEec--CCCCCceEeCC
Confidence 689999999999997 567 99999999999999852 22 36688765
No 217
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=95.99 E-value=0.0047 Score=51.13 Aligned_cols=40 Identities=8% Similarity=0.026 Sum_probs=34.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 233 (244)
....+|+|||||.|..+..|+++ +.+++.+|+ |..++.|+
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~ 107 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFF 107 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHH
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHH
Confidence 34579999999999999999987 568999998 78887764
No 218
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=95.98 E-value=0.0045 Score=49.77 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=36.9
Q ss_pred CCCcceEEEecCC-ccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGG-LGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG-~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.....+|+||||| +|.++..+++.+ ..+++.+|. |..++.+++
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~ 97 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARR 97 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHH
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHH
Confidence 3566899999999 999999999987 788999998 788877764
No 219
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=95.95 E-value=0.0086 Score=51.17 Aligned_cols=49 Identities=6% Similarity=0.000 Sum_probs=39.0
Q ss_pred HhhcCCCCCcceEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHhhhCCC
Q 041256 185 LESYKGFEHVKKLVDVGGGLGITLNMIISKYP-HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 185 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 234 (244)
...++ .....+|+|+|||.|..+..+++..+ ..+++.+|+ |..++.+++
T Consensus 111 ~~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~ 161 (315)
T 1ixk_A 111 PVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRL 161 (315)
T ss_dssp HHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH
T ss_pred HHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 34444 56668999999999999999999975 488999998 676776654
No 220
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=95.92 E-value=0.0033 Score=60.47 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=36.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKY-PHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|||||||.|.++..+++.. |..+++.+|+ |..++.|++
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~ARe 764 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAK 764 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHH
Confidence 356899999999999999999998 6679999998 777777743
No 221
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=95.92 E-value=0.0061 Score=49.13 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=33.6
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|+|||||.|.++..++++ ..+++.+|. |..++.+++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~ 77 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAEN 77 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHH
Confidence 4579999999999999999998 457899998 777777654
No 222
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.91 E-value=0.0057 Score=43.52 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=40.4
Q ss_pred HHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 30 MQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 30 L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
|..-.++.|+..|.. ++.|+.|||+.+|++ ... +.+.|+.|...|++...
T Consensus 23 l~~~~r~~IL~~L~~----~~~~~~ela~~l~is------~st-vs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 23 LGDYNRIRIMELLSV----SEASVGHISHQLNLS------QSN-VSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp TCSHHHHHHHHHHHH----CCBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred hCCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCeEEE
Confidence 333455667777875 689999999999997 456 99999999999999853
No 223
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=95.91 E-value=0.0054 Score=48.44 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=34.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|+|+|||.|.++..+++..+ -+++.+|. |..++.+++
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~ 90 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIE 90 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHH
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHH
Confidence 3457999999999999999998743 37899998 788877764
No 224
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=95.91 E-value=0.0049 Score=42.86 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=48.4
Q ss_pred HHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCC---ceeecCccc
Q 041256 28 AVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVS 104 (244)
Q Consensus 28 ~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~---~~y~~t~~s 104 (244)
.++..-.++.|+..|... ++.|..+||+.++++ ... +.+.|+.|...|++......++ ..|++|+.+
T Consensus 11 ~~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~is------~~t-vs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g 80 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDLT------PGN-LDSHIRVLERNGLVKTYKVIADRPRTVVEITDFG 80 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTCC------HHH-HHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHH
T ss_pred cccCChHHHHHHHHHHhc---CCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEEEecCCCcceEEEEECHHH
Confidence 344555677788888654 589999999999997 456 9999999999999985321111 246666654
No 225
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=95.89 E-value=0.0053 Score=49.26 Aligned_cols=42 Identities=26% Similarity=0.235 Sum_probs=35.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHhhhCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKY-PHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~ 233 (244)
....+|+|||||.|.++..+++.. |+.+++.+|. |..++.++
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~ 119 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSV 119 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Confidence 455799999999999999999985 7789999998 77777665
No 226
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=95.89 E-value=0.0052 Score=48.83 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=33.3
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 194 VKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 194 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+|+|+|||+|.++..++++.. -+++.+|+ |..++.+++
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~ 95 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIK 95 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHH
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHH
Confidence 36899999999999999888754 37899998 788887764
No 227
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=95.88 E-value=0.0039 Score=54.47 Aligned_cols=42 Identities=24% Similarity=0.236 Sum_probs=36.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++|+|||||.|.++..++++.| .+++++|+ |.|++.|++
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~ 229 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKK 229 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHH
Confidence 3568999999999999999998866 78999998 999998864
No 228
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=95.87 E-value=0.0036 Score=52.51 Aligned_cols=42 Identities=24% Similarity=0.150 Sum_probs=36.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|+|+|||+|.++..++++.+. +++..|+ |..++.+++
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~ 166 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVE 166 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHH
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence 44589999999999999999999887 8999998 788887764
No 229
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.84 E-value=0.0053 Score=44.67 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=43.5
Q ss_pred HHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCc
Q 041256 32 AVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (244)
Q Consensus 32 ~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~ 102 (244)
--.++.|+..|.+ ++.++.|||+.+|++ ... +.+.|+.|...|++........-.|++++
T Consensus 20 ~~~r~~IL~~L~~----~~~~~~eLa~~lgis------~st-vs~~L~~L~~~GlV~~~~~gr~~~y~l~~ 79 (118)
T 2jsc_A 20 DPTRCRILVALLD----GVCYPGQLAAHLGLT------RSN-VSNHLSCLRGCGLVVATYEGRQVRYALAD 79 (118)
T ss_dssp SHHHHHHHHHHHT----TCCSTTTHHHHHSSC------HHH-HHHHHHHHTTTTSEEEEECSSSEEEEESS
T ss_pred CHHHHHHHHHHHc----CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCceEEEEECCEEEEEECh
Confidence 3345667777765 589999999999997 456 99999999999999853211112466654
No 230
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=95.83 E-value=0.013 Score=41.73 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=39.8
Q ss_pred CCCCHHHHHHhC-CCCCCCCcchhccHHHHHHHHhhCCcccceeecCC---ceeecCcccccc
Q 041256 49 AKLSVAEIVAQI-PLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSAYF 107 (244)
Q Consensus 49 g~~t~~eLA~~~-~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~---~~y~~t~~s~~l 107 (244)
++.+..||++.+ +++ +.. +.+.|+.|...|++++.....+ -.|++|+.+..+
T Consensus 26 ~~~~~~eLa~~l~~is------~~t-ls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l 81 (107)
T 2hzt_A 26 GKKRTSELKRLMPNIT------QKM-LTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSL 81 (107)
T ss_dssp CCBCHHHHHHHCTTSC------HHH-HHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGG
T ss_pred CCCCHHHHHHHhcCCC------HHH-HHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHH
Confidence 689999999999 997 456 9999999999999986432211 247777766433
No 231
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=95.81 E-value=0.0055 Score=49.71 Aligned_cols=40 Identities=23% Similarity=0.181 Sum_probs=34.3
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|+|||||+|.++..+++.. .+++.+|+ |..++.+++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~ 118 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARN 118 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHH
Confidence 45799999999999999999975 78899998 778877764
No 232
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=95.79 E-value=0.0081 Score=50.35 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=33.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc--hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL--PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl--p~vi~~a~~ 234 (244)
....+|+|||||+|.++..+++.. ..+++..|+ |..++.+++
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~ 121 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLES 121 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHH
Confidence 345799999999999999888763 348999999 677777653
No 233
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.79 E-value=0.003 Score=45.25 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=38.0
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
.++.|+..|.+ ++.|+.|||+.+|++ +.. +.+.|+.|...|++...
T Consensus 26 ~r~~IL~~L~~----~~~s~~eLa~~lgis------~st-vs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 26 RRLQILDLLAQ----GERAVEAIATATGMN------LTT-ASANLQALKSGGLVEAR 71 (108)
T ss_dssp TTHHHHHHHTT----CCEEHHHHHHHHTCC------HHH-HHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc----CCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCeEEE
Confidence 34556667765 689999999999997 456 99999999999999853
No 234
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=95.77 E-value=0.0099 Score=48.69 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=37.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHH-CCCCeEEEccc-hHH----hhhCCCCCCceee
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISK-YPHIKGINYDL-PYV----IKDAPSYPGTLFI 241 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~v----i~~a~~~~~i~~~ 241 (244)
+....+|+|+|||+|.++..+++. .|+-+++.+|+ |.. ++.++++++|+++
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i 130 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPL 130 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEE
Confidence 556789999999999999999886 47888999998 433 3444444555543
No 235
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=95.72 E-value=0.006 Score=53.42 Aligned_cols=44 Identities=14% Similarity=-0.074 Sum_probs=38.5
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
|....+|+|+|||+|.+++.+++..+..+++.+|+ |..++.|++
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~ 259 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEM 259 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHH
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence 45668999999999999999999998778999998 888888764
No 236
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=95.68 E-value=0.0083 Score=50.08 Aligned_cols=44 Identities=9% Similarity=-0.028 Sum_probs=37.0
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPH-IKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~ 234 (244)
.....+|+|+|||.|..+..+++..++ .+++.+|. |..++.+++
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~ 126 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKS 126 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHH
Confidence 455679999999999999999999887 88999998 666766653
No 237
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=95.68 E-value=0.006 Score=47.94 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=31.7
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 196 KLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 196 ~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
+|+|||||.|.++..+++. +.+++.+|. |..++.+++
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~ 69 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQ 69 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHH
Confidence 9999999999999999987 568999998 777776654
No 238
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=95.67 E-value=0.013 Score=39.43 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=36.8
Q ss_pred ChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 37 DVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 37 gifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
.|++.|.+. ++.|..|||+.+|++ ..- +.+.|+.|...|++..
T Consensus 4 ~Il~~L~~~---~~~s~~eLa~~lgvs------~~t-v~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 4 EILEFLNRH---NGGKTAEIAEALAVT------DYQ-ARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHS---CCCCHHHHHHHHTSC------HHH-HHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHc---CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEE
Confidence 467777765 689999999999997 455 9999999999999984
No 239
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.66 E-value=0.0091 Score=40.66 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=44.5
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVS 104 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s 104 (244)
....|.+.|.+. | .|+.|||+++|++ ... +++.|.-|...|++.... ..+-.|+++..+
T Consensus 18 ~~~~IL~lL~~~---g-~sa~eLAk~LgiS------k~a-Vr~~L~~Le~eG~I~~~~-~~PP~W~~~~~~ 76 (82)
T 1oyi_A 18 IVCEAIKTIGIE---G-ATAAQLTRQLNME------KRE-VNKALYDLQRSAMVYSSD-DIPPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHSSS---T-EEHHHHHHHSSSC------HHH-HHHHHHHHHHHTSSEECS-SSSCEEESCC--
T ss_pred HHHHHHHHHHHc---C-CCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEeCC-CCCCcceeccCc
Confidence 445677788763 4 9999999999997 556 999999999999998632 225677776654
No 240
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=95.66 E-value=0.0068 Score=49.89 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=32.8
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 233 (244)
...+|||||||.|.++..++++ ..+++.+|. |..++.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~ 93 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAR 93 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 5579999999999999999987 568899998 77776654
No 241
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=95.65 E-value=0.0068 Score=51.43 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=38.6
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++..+ .....+|+|||||.|.++..++++ ..+++.+|+ |..++.+++
T Consensus 32 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~ 82 (299)
T 2h1r_A 32 DKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKK 82 (299)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHH
T ss_pred HHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHH
Confidence 34555555 566689999999999999999987 457888998 777766653
No 242
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=95.61 E-value=0.0069 Score=56.06 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=34.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|||||||.|.++..+++. +.+++.+|+ |..|+.|+.
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~ 106 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRA 106 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHH
Confidence 34578999999999999999997 678999998 778887763
No 243
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.61 E-value=0.0083 Score=45.78 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcc
Q 041256 26 LPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPV 103 (244)
Q Consensus 26 ~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~ 103 (244)
...+|.--.++.|+..|.+ ++.|+.|||+.+|++ ... +.+-|+.|...|++........-.|++|+.
T Consensus 51 ~l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lgls------~st-vs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~ 117 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFPAS------RSA-ISQHLRVLTEAGLVTPRKDGRFRYYRLDPQ 117 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSSSC------HHH-HHHHHHHHHHTTSEEEEEETTEEEEEECHH
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEEEecCCEEEEEEChH
Confidence 3456666678889999985 699999999999997 456 999999999999998632111124666553
No 244
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=95.58 E-value=0.0064 Score=48.63 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=27.8
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 194 VKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 194 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+|+|||||.|.++..++++ +.+|. |..++.+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~ 83 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARK 83 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHh
Confidence 579999999999999988765 77787 666665543
No 245
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=95.58 E-value=0.0045 Score=53.17 Aligned_cols=41 Identities=27% Similarity=0.290 Sum_probs=33.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~ 234 (244)
+..+|+|||||+|.++..++++ +..+++.+|....++.+++
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~ 78 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKE 78 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHH
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHH
Confidence 3479999999999999988886 5568999998766666543
No 246
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.56 E-value=0.008 Score=41.98 Aligned_cols=63 Identities=13% Similarity=0.202 Sum_probs=45.6
Q ss_pred cChhhHHhhcCCCCCCCHHHH----HHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccccccc
Q 041256 36 LDVFEIISKAGPGAKLSVAEI----VAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYFV 108 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eL----A~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 108 (244)
+.++..|.+. ++.|..+| |+.++++ +.. +.++++.|...|++.+........|.+|+.++.+.
T Consensus 11 ~~iL~~l~~~---~~~~~~el~~~la~~l~is------~~t-vs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 11 AIVLAYLYDN---EGIATYDLYKKVNAEFPMS------TAT-FYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHTTC---TTCBHHHHHHHHHTTSCCC------HHH-HHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHHHHcCCC------HHH-HHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHH
Confidence 4456666654 68999999 9999997 456 99999999999999864322223466777665443
No 247
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=95.56 E-value=0.011 Score=49.12 Aligned_cols=42 Identities=21% Similarity=0.148 Sum_probs=34.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|||||||.|.++..+++. +..+++.+|+ |..++.+++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~ 105 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARV 105 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHH
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 45589999999999999997776 5668999998 777776653
No 248
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=95.54 E-value=0.0073 Score=48.62 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=35.5
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCC------CCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYP------HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P------~l~~~v~Dl-p~vi~~a~~ 234 (244)
.....+|+|||||.|.++..+++..+ ..+++.+|. |..++.+++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~ 132 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKA 132 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHH
Confidence 34557999999999999999999765 368899997 777776653
No 249
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.54 E-value=0.013 Score=40.36 Aligned_cols=43 Identities=9% Similarity=0.251 Sum_probs=37.8
Q ss_pred hhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 38 VFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 38 ifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
|.+.|.+. |.+|+.|||+.++++ +.- ++|.|..|...|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLA~~l~VS------~~T-IRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQ---GRMEAKQLSARLQTP------QPL-IDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHS---CSEEHHHHHHHTTCC------HHH-HHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEEE
Confidence 66778776 799999999999997 556 99999999999999964
No 250
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.53 E-value=0.014 Score=39.34 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=37.3
Q ss_pred hhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 38 VFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 38 ifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
|.+.|.+. |.+++.|||+.++++ +.- ++|.|..|...|++.+
T Consensus 7 Il~~L~~~---g~vsv~eLa~~l~VS------~~T-IRrdL~~Le~~G~l~R 48 (78)
T 1xn7_A 7 VRDLLALR---GRMEAAQISQTLNTP------QPM-INAMLQQLESMGKAVR 48 (78)
T ss_dssp HHHHHHHS---CSBCHHHHHHHTTCC------HHH-HHHHHHHHHHHTSEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEE
Confidence 66778776 699999999999997 556 9999999999999986
No 251
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=95.48 E-value=0.012 Score=49.38 Aligned_cols=39 Identities=18% Similarity=0.041 Sum_probs=31.0
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDA 232 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a 232 (244)
+....+|||||||+|.++..++++ -+++.+|+-..+..+
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a 118 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSG 118 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTT
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhh
Confidence 456689999999999999999988 578889985543333
No 252
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=95.46 E-value=0.02 Score=42.35 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=38.0
Q ss_pred HHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 33 VVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 33 a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
..++.++..|... +++|..+||+.++++ +.. +.++++.|...|++++.
T Consensus 37 ~~~~~vL~~l~~~---~~~t~~eLa~~l~~~------~~t-vs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 37 PPDVHVLKLIDEQ---RGLNLQDLGRQMCRD------KAL-ITRKIRELEGRNLVRRE 84 (142)
T ss_dssp HHHHHHHHHHHHT---TTCCHHHHHHHHC---------CH-HHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHHhC---CCcCHHHHHHHhCCC------HHH-HHHHHHHHHHCCCEeec
Confidence 4556688888876 589999999999997 455 99999999999999963
No 253
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.46 E-value=0.012 Score=43.22 Aligned_cols=50 Identities=14% Similarity=0.314 Sum_probs=41.0
Q ss_pred HHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 30 MQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 30 L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
|.--.++.|+..|.+ ++.++.+||+.+|++ ... +.+.|+.|...|++...
T Consensus 43 L~~~~rl~IL~~L~~----~~~s~~ela~~lgis------~st-vs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 43 LADPNRLRLLSLLAR----SELCVGDLAQAIGVS------ESA-VSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp HCCHHHHHHHHHHTT----CCBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred hCCHHHHHHHHHHHc----CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCeEEE
Confidence 333356778888875 689999999999997 456 99999999999999853
No 254
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=95.43 E-value=0.014 Score=48.62 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=29.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHh
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVI 229 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi 229 (244)
+....+|||||||+|.++..++++ -+++.+|+-..+
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~ 107 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLG 107 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhh
Confidence 456689999999999999998887 578899985443
No 255
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.42 E-value=0.011 Score=42.50 Aligned_cols=75 Identities=11% Similarity=0.138 Sum_probs=53.1
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCC--HHHHHHhC-CCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 13 NFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLS--VAEIVAQI-PLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 13 ~~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t--~~eLA~~~-~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
+...+++.+.+.|....| ..|.. |+.+ +.||++.+ |++ +.. +.+.|+.|...|++++
T Consensus 16 ~~~~~l~~l~~~wrl~IL---------~~L~~----g~~~~~~~eL~~~l~gis------~~~-ls~~L~~Le~~GlV~r 75 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLII---------SVLGN----GSTRQNFNDIRSSIPGIS------STI-LSRRIKDLIDSGLVER 75 (111)
T ss_dssp TTSSTHHHHHSTTHHHHH---------HHHTS----SSSCBCHHHHHHTSTTCC------HHH-HHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCccHHHHH---------HHHhc----CCCCCCHHHHHHHccCCC------HHH-HHHHHHHHHHCCCEEE
Confidence 344555666666655544 34543 5777 99999999 897 456 9999999999999996
Q ss_pred eeecCCceeecCccccccc
Q 041256 90 SFVDGQRLYSLAPVSAYFV 108 (244)
Q Consensus 90 ~~~~~~~~y~~t~~s~~l~ 108 (244)
... ..-.|++|+.++.+.
T Consensus 76 ~~~-r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 76 RSG-QITTYALTEKGMNVR 93 (111)
T ss_dssp EES-SSEEEEECHHHHHHH
T ss_pred eec-CcEEEEECccHHHHH
Confidence 422 235688888776544
No 256
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=95.39 E-value=0.007 Score=50.33 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=44.0
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVS 104 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s 104 (244)
+.|++.|...+ +++|+.|||+.+|++ ..- +.|+|+.|...||+.++ ..++|++++..
T Consensus 26 l~iL~~l~~~~--~~~~~~eia~~~gl~------kst-v~r~l~tL~~~G~v~~~---~~~~Y~lg~~~ 82 (260)
T 2o0y_A 26 IDLLELFDAAH--PTRSLKELVEGTKLP------KTT-VVRLVATMCARSVLTSR---ADGSYSLGPEM 82 (260)
T ss_dssp HHHHTTCBTTB--SSBCHHHHHHHHCCC------HHH-HHHHHHHHHHTTSEEEC---TTSCEEECHHH
T ss_pred HHHHHHHhhCC--CCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEEC---CCCeEEecHHH
Confidence 34566665432 689999999999996 445 99999999999999963 23489998764
No 257
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=95.35 E-value=0.0074 Score=47.54 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=31.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 233 (244)
....+|+|||||.|.+...++.+ ++.+++.+|. |..++.++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~ 63 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAE 63 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHH
Confidence 44579999999999986555544 6679999998 77776654
No 258
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=95.33 E-value=0.0067 Score=50.34 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=47.1
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccccccc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYFV 108 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 108 (244)
+.|++.|.+.+ ++.|+.|||+.+|++ ..- +.|+|+.|...|++.+ . ++.|++++....|.
T Consensus 17 l~iL~~l~~~~--~~~~~~eia~~~gl~------~st-v~r~l~~L~~~G~v~~---~-~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQR--PNPTLAELATEAGLS------RPA-VRRILLTLQKLGYVAG---S-GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSC--SSCBHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE---E-TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEe---C-CCEEEEcHHHHHHH
Confidence 34566666532 589999999999996 445 9999999999999995 3 48999998765444
No 259
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=95.32 E-value=0.012 Score=52.48 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=38.8
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+++.++ .....+|+|+|||.|.++..++++ ..+++.+|. |..++.|++
T Consensus 277 ~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~ 326 (433)
T 1uwv_A 277 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQ 326 (433)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHH
T ss_pred HHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHH
Confidence 3344444 455679999999999999999988 678899998 788888764
No 260
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=95.31 E-value=0.031 Score=41.52 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhC-CCCCCCCcchhccHHHHHHHHhhCCcccceee
Q 041256 14 FSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQI-PLKDNNPEAAAMTLDRVLRLLVSYNALHCSFV 92 (244)
Q Consensus 14 ~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~-~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~ 92 (244)
...+++++.+.|...+|. .|.. |+.+..||++.+ |++ +.. |.+.|+.|...|++++...
T Consensus 16 i~~~l~~lg~kW~l~IL~---------~L~~----g~~rf~eL~~~l~gIs------~~~-Ls~~L~~Le~~GLV~R~~~ 75 (131)
T 4a5n_A 16 VEFTLDVIGGKWKGILFY---------HMID----GKKRFNEFRRICPSIT------QRM-LTLQLRELEADGIVHREVY 75 (131)
T ss_dssp HHHHHHHHCSSSHHHHHH---------HHTT----SCBCHHHHHHHCTTSC------HHH-HHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHcCcCHHHHHH---------HHhc----CCcCHHHHHHHhcccC------HHH-HHHHHHHHHHCCCEEEEec
Confidence 445555555565555543 3433 699999999999 997 456 9999999999999996422
Q ss_pred cCC---ceeecCccccccc
Q 041256 93 DGQ---RLYSLAPVSAYFV 108 (244)
Q Consensus 93 ~~~---~~y~~t~~s~~l~ 108 (244)
..+ -.|++|+.++.+.
T Consensus 76 ~~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 76 HQVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp CSSSCEEEEEECTTGGGGH
T ss_pred CCCCCeEEEEECHhHHHHH
Confidence 111 2588888877554
No 261
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=95.29 E-value=0.0096 Score=47.08 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=33.1
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCC-eEEEccc-hHHhhhCCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHI-KGINYDL-PYVIKDAPS 234 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l-~~~v~Dl-p~vi~~a~~ 234 (244)
.++..+. ....+|+|||||.|.++..+ +. +++.+|. |..++.+++
T Consensus 28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~ 74 (211)
T 2gs9_A 28 RALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRR 74 (211)
T ss_dssp HHHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHH
T ss_pred HHHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHH
Confidence 3444443 25689999999999999887 44 7899998 666666553
No 262
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=95.26 E-value=0.016 Score=48.75 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=34.1
Q ss_pred CCcceEEEecCCc--cHHHHHH-HHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGL--GITLNMI-ISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~--G~~~~~l-~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+.++|||||||. +....++ .+..|+.+++.+|. |.+++.+++
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~ 123 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQG 123 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHH
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHH
Confidence 3568999999997 3344444 45689999999999 999999875
No 263
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=95.19 E-value=0.021 Score=43.06 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=37.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCc
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~ 102 (244)
++.|.++||+.++++ +.. ++++|..|...|++.-. +...|.|.++.
T Consensus 27 ~~~s~~~IA~~~~i~------~~~-l~kil~~L~~aGlv~s~-rG~~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNLS------DLY-LEQLVGPLRNAGLIRSV-RGAKGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTCC------HHH-HHHHHHHHHHTTSEEEC-SSSSSEEEESS
T ss_pred CCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCEEEec-CCCCCCeeecC
Confidence 589999999999997 678 99999999999999742 12246788755
No 264
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=95.17 E-value=0.052 Score=40.54 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=45.3
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc--eeecCCc---eeecCccccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC--SFVDGQR---LYSLAPVSAY 106 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~--~~~~~~~---~y~~t~~s~~ 106 (244)
++.++..|... +++|..+||+.++++ +.. +.++++.|...|++.+ .....+. .+.+|+.+..
T Consensus 43 ~~~iL~~l~~~---~~~t~~eLa~~l~~~------~~t-vs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~ 109 (154)
T 2qww_A 43 QLAMINVIYST---PGISVADLTKRLIIT------GSS-AAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGED 109 (154)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHH
Confidence 45577777775 589999999999997 456 9999999999999985 3212222 3666666553
No 265
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.17 E-value=0.026 Score=43.46 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=44.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccccccccCCCCCCCHHHHHHHh
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYFVRNNQNGASLSPYMALC 124 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~ 124 (244)
++.|.++||+.++++ +.. ++++|..|...|++.-. +...|.|.++.- . ..-+++..+...
T Consensus 43 ~~~s~~eIA~~~~i~------~~~-l~kil~~L~~aGlv~s~-rG~~GGy~Lar~-------p-~eItL~dVi~av 102 (159)
T 3lwf_A 43 GPISLRSIAQDKNLS------EHY-LEQLIGPLRNAGIVKSI-RGAHGGYVLNGD-------P-EKITAGDIIRTL 102 (159)
T ss_dssp CCBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEE-CSTTCEEEECSC-------T-TTCBHHHHHHHH
T ss_pred CCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCeEEEe-cCCCCceEecCC-------H-HHCCHHHHHHHH
Confidence 689999999999997 678 99999999999999842 222466887542 2 122566666544
No 266
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=95.14 E-value=0.0098 Score=50.54 Aligned_cols=41 Identities=15% Similarity=0.073 Sum_probs=32.3
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|||||||.|..+..+++.. ..+++.+|+ |..++.|++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~ 89 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNE 89 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHH
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHH
Confidence 35799999999998777766543 457899998 788888764
No 267
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=95.14 E-value=0.011 Score=50.11 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=38.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++|+=||||.|..+.++++..|--+.+++|+ |.|++.+++
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~ 125 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQ 125 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHH
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHh
Confidence 5678999999999999999999888888999998 999988754
No 268
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=95.13 E-value=0.013 Score=51.35 Aligned_cols=43 Identities=21% Similarity=0.111 Sum_probs=34.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~ 234 (244)
.....+|||||||+|.++..++++. ..+++.+|....++.+++
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~ 103 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARA 103 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHH
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHH
Confidence 4556899999999999999999883 348899998766666653
No 269
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=95.11 E-value=0.0071 Score=50.43 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=45.8
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccccc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAY 106 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~ 106 (244)
+.|++.|.+.+ +++|+.|||+.+|++ ..- +.|+|+.|...|++.+ . +++|++++....
T Consensus 24 l~iL~~l~~~~--~~~~~~eia~~~gl~------~st-v~r~l~tL~~~G~v~~---~-~~~Y~Lg~~~~~ 81 (265)
T 2ia2_A 24 LAVIRCFDHRN--QRRTLSDVARATDLT------RAT-ARRFLLTLVELGYVAT---D-GSAFWLTPRVLE 81 (265)
T ss_dssp HHHHHTCCSSC--SSEEHHHHHHHHTCC------HHH-HHHHHHHHHHHTSEEE---S-SSEEEECGGGGG
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEe---c-CCEEEEcHHHHH
Confidence 44566676432 589999999999996 445 9999999999999995 3 488999886543
No 270
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.07 E-value=0.015 Score=39.12 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=36.4
Q ss_pred hhhHHhhc-----CCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 38 VFEIISKA-----GPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 38 ifd~L~~~-----~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
|++.|.+. | +|.|+.|||+.+|++ +.- +++-|..|...|++...
T Consensus 9 IL~~I~~~i~~~~g--~~psv~EIa~~lgvS------~~T-Vrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 9 IISIVQERQNMDDG--APVKTRDIADAAGLS------IYQ-VRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHTT--SCEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhhccC--CCcCHHHHHHHHCCC------HHH-HHHHHHHHHHCCcEEec
Confidence 45555554 4 699999999999997 556 99999999999999963
No 271
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=95.06 E-value=0.017 Score=47.72 Aligned_cols=41 Identities=12% Similarity=0.005 Sum_probs=35.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
+..+.+|+|||||.|-++..+. |..+.+.+|+ +..++.+++
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~ 144 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITP 144 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHH
T ss_pred CCCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHH
Confidence 4557899999999999999888 9999999998 777777654
No 272
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.05 E-value=0.013 Score=48.36 Aligned_cols=62 Identities=11% Similarity=0.202 Sum_probs=48.7
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccccccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYFV 108 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 108 (244)
++.|...|.+. +++|..|||+.+|++ ..- +.|.|+.|...|++.+. .....|++|+.+..+.
T Consensus 154 ~~~IL~~L~~~---~~~s~~eLA~~lgls------ksT-v~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 154 EMKLLNVLYET---KGTGITELAKMLDKS------EKT-LINKIAELKKFGILTQK--GKDRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHH---TCBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHH
Confidence 44566676654 589999999999997 455 99999999999999963 2346799998876553
No 273
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.02 E-value=0.018 Score=41.34 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=43.1
Q ss_pred hhhHHhhcCCCCCCCHHHHHHhC-CCCCCCCcchhccHHHHHHHHhhCCcccceeecCC---ceeecCcccccc
Q 041256 38 VFEIISKAGPGAKLSVAEIVAQI-PLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSAYF 107 (244)
Q Consensus 38 ifd~L~~~~~~g~~t~~eLA~~~-~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~---~~y~~t~~s~~l 107 (244)
|...|.. ++.+..|||+.+ +++ +.. +.+.|+.|...|++++.....+ -.|++|+.+..+
T Consensus 27 IL~~L~~----~~~~~~eLa~~l~~is------~~t-vs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~ 89 (112)
T 1z7u_A 27 LMDELFQ----GTKRNGELMRALDGIT------QRV-LTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYAL 89 (112)
T ss_dssp HHHHHHH----SCBCHHHHHHHSTTCC------HHH-HHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHH
T ss_pred HHHHHHh----CCCCHHHHHHHhccCC------HHH-HHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHH
Confidence 3444554 589999999999 997 456 9999999999999986432211 137887776533
No 274
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=94.97 E-value=0.11 Score=38.23 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=43.4
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSA 105 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~ 105 (244)
++.++..|. . ++.|..+||+.++++ ... +.++++.|...|++.+.....+. .+.+|+.+.
T Consensus 39 ~~~iL~~l~-~---~~~~~~ela~~l~~s------~~t-vs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~ 101 (146)
T 2gxg_A 39 DFLVLRATS-D---GPKTMAYLANRYFVT------QSA-ITASVDKLEEMGLVVRVRDREDRRKILIEITEKGL 101 (146)
T ss_dssp HHHHHHHHT-T---SCBCHHHHHHHTTCC------HHH-HHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHH
T ss_pred HHHHHHHHh-c---CCcCHHHHHHHhCCC------chh-HHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHH
Confidence 445667776 3 699999999999997 456 99999999999999864211122 255555544
No 275
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=94.97 E-value=0.025 Score=44.80 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=27.5
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccch
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLP 226 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 226 (244)
.+++.+.......+|+|||||.|.++..+. .+++.+|+.
T Consensus 57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s 95 (215)
T 2zfu_A 57 RIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLA 95 (215)
T ss_dssp HHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESS
T ss_pred HHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCC
Confidence 344444323456899999999999998873 567777763
No 276
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=94.96 E-value=0.038 Score=40.90 Aligned_cols=64 Identities=8% Similarity=0.167 Sum_probs=47.2
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCccccccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAYFV 108 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 108 (244)
.++.++..|... ++ |..+||+.++++ +.. +.++++.|...|++.+.....+. .+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~~~---~~-~~~~la~~l~~~------~~t-vs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEE---PR-SMVYLANRYFVT------QSA-ITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHS---CE-EHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CC-CHHHHHHHHCCC------hhH-HHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHH
Confidence 355678888875 35 999999999997 556 99999999999999974322222 367777665443
No 277
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=94.92 E-value=0.021 Score=48.11 Aligned_cols=51 Identities=18% Similarity=0.112 Sum_probs=42.9
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 181 MEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 181 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+++.+. +.....+||.++|.|..+.+|+++ +.+.+.+|. |..++.+++
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~ 62 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG 62 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh
Confidence 456777776 667789999999999999999998 778999998 888877653
No 278
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=94.85 E-value=0.004 Score=52.06 Aligned_cols=43 Identities=14% Similarity=0.052 Sum_probs=37.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+.+|+|||||.|-++..+...+|..+.+.+|. +..++.+++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~ 174 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDE 174 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Confidence 3478999999999999999999999999999998 677776654
No 279
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=94.84 E-value=0.026 Score=42.79 Aligned_cols=63 Identities=6% Similarity=0.050 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcc
Q 041256 25 VLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPV 103 (244)
Q Consensus 25 ~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~ 103 (244)
....+|++.+.+... .. ++.|.++||+.++++ +.. ++++|..|...|++... .|.|.|.++.-
T Consensus 12 ~~~yAl~~L~~La~~---~~----~~~~~~~iA~~~~i~------~~~-l~kil~~L~~~Glv~s~--rG~GGy~L~~~ 74 (149)
T 1ylf_A 12 RFSIAVHILSILKNN---PS----SLCTSDYMAESVNTN------PVV-IRKIMSYLKQAGFVYVN--RGPGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHHHHHHS---CG----GGCCHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEEEC-----CCEEESSC
T ss_pred HHHHHHHHHHHHHhC---CC----CCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCcEEEc--cCCCceEeCCC
Confidence 334466666655431 11 589999999999997 678 99999999999999842 23566877653
No 280
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=94.84 E-value=0.0044 Score=51.88 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=30.2
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 233 (244)
...+|||||||+|. ...++.+.+..+++.+|+ |..++.++
T Consensus 71 ~~~~vLDiGcG~G~-~~~l~~~~~~~~v~gvD~s~~~l~~a~ 111 (289)
T 2g72_A 71 SGRTLIDIGSGPTV-YQLLSACSHFEDITMTDFLEVNRQELG 111 (289)
T ss_dssp CCSEEEEETCTTCC-GGGTTGGGGCSEEEEECSCHHHHHHHH
T ss_pred CCCeEEEECCCcCh-HHHHhhccCCCeEEEeCCCHHHHHHHH
Confidence 45799999999999 444455555668999998 77776554
No 281
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=94.82 E-value=0.035 Score=40.73 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=48.6
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCccccccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAYFV 108 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~l~ 108 (244)
.++.++..|... ++.|..+||+.++++ +.. +.+.++.|...|++.......++ .|.+|+.+..+.
T Consensus 32 ~~~~iL~~l~~~---~~~~~~ela~~l~is------~~~-vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKD---APLHQLALQERLQID------RAA-VTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345578888775 589999999999997 456 99999999999999864321112 477777776544
No 282
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=94.77 E-value=0.025 Score=42.03 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=41.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccccccc
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYFV 108 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 108 (244)
++.|..+||+.++++ +.. +.+.|+.|...|++.+ .....|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~vs------~~t-vs~~l~~Le~~Glv~r---~~~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAVH------PSS-VTKMVQKLDKDEYLIY---EKYRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEEE---ETTTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCCC------HHH-HHHHHHHHHHCCCEEE---eeCceEEEchhHHHHH
Confidence 589999999999997 456 9999999999999995 2346789988876443
No 283
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=94.72 E-value=0.023 Score=41.67 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=45.4
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSA 105 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~ 105 (244)
++.|+..|... +++|..+||+.++++ ... +.++++.|...|++.+.....+. .|.+|+.+.
T Consensus 40 ~~~iL~~l~~~---~~~t~~ela~~l~~~------~~t-vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~ 103 (140)
T 2nnn_A 40 QWAALVRLGET---GPCPQNQLGRLTAMD------AAT-IKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGR 103 (140)
T ss_dssp HHHHHHHHHHH---SSBCHHHHHHHTTCC------HHH-HHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHH
Confidence 45578888765 589999999999997 456 99999999999999863211122 256666554
No 284
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=94.71 E-value=0.0034 Score=51.44 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=34.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 233 (244)
.+..+|||||||.|.++..+++..+ .+++.+|. |..++.++
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~ 96 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQ 96 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHH
Confidence 4568999999999999999988877 57889998 67777764
No 285
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=94.70 E-value=0.022 Score=41.72 Aligned_cols=46 Identities=9% Similarity=0.285 Sum_probs=38.5
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
++.++..|... +++|..+||+.++++ +.. +.+.++.|...|++.+.
T Consensus 35 ~~~iL~~l~~~---~~~~~~ela~~l~~~------~~t-vs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 35 QFGVIQVLAKS---GKVSMSKLIENMGCV------PSN-MTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHHHHS---CSEEHHHHHHHCSSC------CTT-HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHCCC------hhH-HHHHHHHHHHCCCeeec
Confidence 45577778775 689999999999997 446 99999999999999863
No 286
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=94.68 E-value=0.031 Score=50.16 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHhhhCC
Q 041256 166 NDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPH-IKGINYDL-PYVIKDAP 233 (244)
Q Consensus 166 ~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~ 233 (244)
...|..+.-.........+...++ .....+|+|+|||.|..+..+++..++ .+++.+|. |..++.++
T Consensus 233 ~~~~~~G~~~~qd~~s~l~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~ 301 (450)
T 2yxl_A 233 SSAFNEGKIIVQEEASAVASIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLK 301 (450)
T ss_dssp CHHHHTTSEEECCHHHHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH
T ss_pred CchhhCceEEecCchhHHHHHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH
Confidence 345555443333222223334444 556679999999999999999999987 88999998 66566554
No 287
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=94.68 E-value=0.019 Score=50.48 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=29.8
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCC
Q 041256 195 KKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPS 234 (244)
Q Consensus 195 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~ 234 (244)
++|||||||+|.+++..+++.. -+++.+|..+.++.|++
T Consensus 85 k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~~~~~a~~ 123 (376)
T 4hc4_A 85 KTVLDVGAGTGILSIFCAQAGA-RRVYAVEASAIWQQARE 123 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHH
T ss_pred CEEEEeCCCccHHHHHHHHhCC-CEEEEEeChHHHHHHHH
Confidence 7899999999999887776543 37888888666666553
No 288
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=94.57 E-value=0.034 Score=39.45 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=51.0
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCC-CCCCCCcchhccHHHHHHHHhhCCccccee
Q 041256 13 NFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIP-LKDNNPEAAAMTLDRVLRLLVSYNALHCSF 91 (244)
Q Consensus 13 ~~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~-~~~~~~~~~~~~l~rlLr~L~~~gll~~~~ 91 (244)
....+++++.+.+....| ..|.+ ++.+..||++.++ ++ +.. +.+.|+.|...|++++..
T Consensus 14 ~~~~~l~~l~~~~~~~IL---------~~L~~----~~~~~~eL~~~l~gis------~~~-ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLII---------FQINR----RIIRYGELKRAIPGIS------EKM-LIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp HHHHHHHHHTSSSHHHHH---------HHHTT----SCEEHHHHHHHSTTCC------HHH-HHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHcCccHHHHH---------HHHHh----CCcCHHHHHHHcccCC------HHH-HHHHHHHHHHCCCEEEee
Confidence 344555555555554443 34543 6899999999994 97 456 999999999999998643
Q ss_pred ecCC---ceeecCcccccc
Q 041256 92 VDGQ---RLYSLAPVSAYF 107 (244)
Q Consensus 92 ~~~~---~~y~~t~~s~~l 107 (244)
...+ -.|.+|+.++.+
T Consensus 74 ~~~d~r~~~y~LT~~G~~l 92 (107)
T 2fsw_A 74 YPEVPPRVEYSLTPLGEKV 92 (107)
T ss_dssp ECSSSCEEEEEECHHHHTT
T ss_pred cCCCCCeeEEEECccHHHH
Confidence 2211 248888877543
No 289
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=94.57 E-value=0.022 Score=38.37 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=37.8
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhC-----CCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQI-----PLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~-----~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
+..|++.|.+.+ +++.|++||++.+ +++ ..- ++|.|+.|+..|++.+.
T Consensus 19 r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~is------~~T-VyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 19 RLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEIG------LAT-VYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCCC------HHH-HHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCCC------Hhh-HHHHHHHHHHCCCeEEE
Confidence 345788887641 0489999999999 775 344 99999999999999864
No 290
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=94.57 E-value=0.027 Score=49.56 Aligned_cols=52 Identities=21% Similarity=0.093 Sum_probs=40.8
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEEc
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPH--------------------------------------IKGINY 223 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~v~ 223 (244)
..++.... |.....|+|++||+|.++++.+....+ .+++.+
T Consensus 185 a~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv 263 (385)
T 3ldu_A 185 AGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGY 263 (385)
T ss_dssp HHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEE
T ss_pred HHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEE
Confidence 34555555 777799999999999999998876332 578999
Q ss_pred cc-hHHhhhCCC
Q 041256 224 DL-PYVIKDAPS 234 (244)
Q Consensus 224 Dl-p~vi~~a~~ 234 (244)
|. |.+++.|++
T Consensus 264 Did~~ai~~Ar~ 275 (385)
T 3ldu_A 264 DIDEESIDIARE 275 (385)
T ss_dssp ESCHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 98 888888865
No 291
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=94.56 E-value=0.084 Score=39.27 Aligned_cols=63 Identities=8% Similarity=0.075 Sum_probs=42.7
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCce---eecCccccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRL---YSLAPVSAY 106 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---y~~t~~s~~ 106 (244)
++.++..|...+ +++|..+||+.++++ +.. +.++++-|...|++++.....+.+ +.+|+.++.
T Consensus 41 q~~vL~~l~~~~--~~~t~~eLa~~l~i~------~~t-vs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~ 106 (150)
T 3fm5_A 41 SYSVLVLACEQA--EGVNQRGVAATMGLD------PSQ-IVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRR 106 (150)
T ss_dssp HHHHHHHHHHST--TCCCSHHHHHHHTCC------HHH-HHHHHHHHHTTTSEEC-----------CEECHHHHH
T ss_pred HHHHHHHHHhCC--CCcCHHHHHHHHCCC------HhH-HHHHHHHHHHCCCEEeeCCccccchheeeECHHHHH
Confidence 445667776543 578999999999997 456 999999999999998632111221 555555543
No 292
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=94.54 E-value=0.069 Score=40.78 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=46.6
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAYF 107 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~l 107 (244)
++.|+..|... +++|..+||+.++++ ... +.++++.|...|++.+.....+. .+.+|+.+..+
T Consensus 47 ~~~iL~~L~~~---~~~t~~eLa~~l~is------~~t-vs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~ 112 (168)
T 2nyx_A 47 QFRTLVILSNH---GPINLATLATLLGVQ------PSA-TGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDV 112 (168)
T ss_dssp HHHHHHHHHHH---CSEEHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHhCCC------HHH-HHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHH
Confidence 45577788775 589999999999997 456 99999999999999864211122 26666666543
No 293
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=94.53 E-value=0.016 Score=48.66 Aligned_cols=41 Identities=15% Similarity=0.098 Sum_probs=33.4
Q ss_pred cceEEEecCCccH----HHHHHHHHCC----CCeEEEccc-hHHhhhCCC
Q 041256 194 VKKLVDVGGGLGI----TLNMIISKYP----HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 194 ~~~vvDVGGG~G~----~~~~l~~~~P----~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+|+|+|||+|. +++.+++..| +.+++..|+ |.+++.|++
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~ 155 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS 155 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHh
Confidence 4789999999998 6666777756 468899999 888888764
No 294
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=94.49 E-value=0.023 Score=41.58 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=44.3
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCce---eecCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRL---YSLAPVSA 105 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---y~~t~~s~ 105 (244)
++.++..|... ++.|..+||+.++++ ... +.++++.|...|++.+.....+++ +.+|+.+.
T Consensus 31 ~~~iL~~l~~~---~~~~~~ela~~l~~s------~~t-vs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~ 94 (138)
T 3bpv_A 31 QVACLLRIHRE---PGIKQDELATFFHVD------KGT-IARTLRRLEESGFIEREQDPENRRRYILEVTRRGE 94 (138)
T ss_dssp HHHHHHHHHHS---TTCBHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHH
Confidence 44466777765 689999999999997 456 999999999999999642222222 55555544
No 295
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=94.42 E-value=0.038 Score=41.92 Aligned_cols=63 Identities=13% Similarity=0.186 Sum_probs=46.3
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAYF 107 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~l 107 (244)
++.|+..|... +++|..+||+.++++ +.. +.++++.|...|++++.....+. .+.+|+.++.+
T Consensus 48 q~~iL~~l~~~---~~~t~~eLa~~l~~~------~~t-vs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~ 113 (162)
T 3k0l_A 48 QFTALSVLAAK---PNLSNAKLAERSFIK------PQS-ANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDK 113 (162)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTSC------GGG-HHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHH
Confidence 34577788775 689999999999997 456 99999999999999964322222 35666655533
No 296
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=94.40 E-value=0.027 Score=41.31 Aligned_cols=63 Identities=21% Similarity=0.174 Sum_probs=45.3
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAYF 107 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~l 107 (244)
++.++..|... ++.|..+||+.++++ +.. +.++++.|...|++.+.....++ .+.+|+.+..+
T Consensus 36 ~~~iL~~l~~~---~~~~~~~la~~l~~~------~~t-vs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~ 101 (138)
T 1jgs_A 36 QFKVLCSIRCA---ACITPVELKKVLSVD------LGA-LTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAI 101 (138)
T ss_dssp HHHHHHHHHHH---SSBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHH
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHCCC------hHH-HHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHH
Confidence 44466777765 589999999999997 456 99999999999999864222222 25666655433
No 297
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=94.37 E-value=0.033 Score=49.18 Aligned_cols=52 Identities=13% Similarity=0.014 Sum_probs=40.9
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEEc
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPH--------------------------------------IKGINY 223 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~v~ 223 (244)
..++.... |.....|+|.+||+|.++++.+....+ .+++.+
T Consensus 191 a~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv 269 (393)
T 3k0b_A 191 AALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGG 269 (393)
T ss_dssp HHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred HHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEE
Confidence 34555555 877789999999999999998876544 568999
Q ss_pred cc-hHHhhhCCC
Q 041256 224 DL-PYVIKDAPS 234 (244)
Q Consensus 224 Dl-p~vi~~a~~ 234 (244)
|. |.+++.|++
T Consensus 270 Did~~al~~Ar~ 281 (393)
T 3k0b_A 270 DIDARLIEIAKQ 281 (393)
T ss_dssp ESCHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 98 888888764
No 298
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.33 E-value=0.031 Score=40.87 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=38.6
Q ss_pred hcChhhHHhhcCCCCC-CCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 35 ELDVFEIISKAGPGAK-LSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~-~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
+..|+..|.+.+ +| +|+.|||+.++++ ..- +.|.|+.|...|++.+.
T Consensus 28 e~~il~~L~~~~--~~~~t~~eLa~~l~~s------~sT-V~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 28 DLNVMKSFLNEP--DRWIDTDALSKSLKLD------VST-VQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHST--TCCEEHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCC--CCCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEee
Confidence 445777777754 56 9999999999997 455 99999999999999863
No 299
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.32 E-value=0.039 Score=40.83 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=44.5
Q ss_pred HhcChhhHHhh-cCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccc
Q 041256 34 VELDVFEIISK-AGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSA 105 (244)
Q Consensus 34 ~~lgifd~L~~-~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~ 105 (244)
.++.++..|.. . ++.|..+||+.++++ ... +.++++.|...|++.+.....++ .+.+|+.+.
T Consensus 36 ~~~~iL~~l~~~~---~~~~~~~la~~l~i~------~~~-vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~ 101 (147)
T 2hr3_A 36 SQLVVLGAIDRLG---GDVTPSELAAAERMR------SSN-LAALLRELERGGLIVRHADPQDGRRTRVSLSSEGR 101 (147)
T ss_dssp HHHHHHHHHHHTT---SCBCHHHHHHHTTCC------HHH-HHHHHHHHHHTTSEEEEC------CCEEEECHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHhCCC------hhh-HHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHH
Confidence 45667778876 4 689999999999997 456 99999999999999863211112 255665554
No 300
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=94.32 E-value=0.023 Score=48.93 Aligned_cols=40 Identities=15% Similarity=0.034 Sum_probs=34.1
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
+..+|||+|||+|.++..+++... +++.+|+ |..++.+++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~ 193 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKE 193 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHH
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHH
Confidence 446999999999999999999754 8999998 888887764
No 301
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=94.32 E-value=0.046 Score=41.24 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=40.2
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecC--CceeecCcccccc
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDG--QRLYSLAPVSAYF 107 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~--~~~y~~t~~s~~l 107 (244)
|+.+..||++.++++ ... +.+.|+.|...|++++..... .-.|++|+.++.+
T Consensus 36 g~~~~~eLa~~lgis------~~t-ls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l 89 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLA------KNI-LAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRAL 89 (146)
T ss_dssp TCCSHHHHHHHHCCC------HHH-HHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTT
T ss_pred CCCCHHHHHHHhCCC------HHH-HHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHH
Confidence 689999999999997 456 999999999999999632111 1268888876544
No 302
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=94.31 E-value=0.017 Score=50.84 Aligned_cols=40 Identities=10% Similarity=0.127 Sum_probs=34.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|+|+|||.|.++..++++ +.+++.+|. |..++.+++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~ 273 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQK 273 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHH
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence 4479999999999999999998 568899998 788877764
No 303
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=94.29 E-value=0.1 Score=39.41 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=44.6
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCccccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAY 106 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~ 106 (244)
++.|+..|... +++|..+||+.++++ +.. +.++++.|...|++++.....+. .+.+|+.++.
T Consensus 55 q~~vL~~l~~~---~~~t~~eLa~~l~~~------~~~-vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~ 119 (161)
T 3e6m_A 55 KLRLLSSLSAY---GELTVGQLATLGVME------QST-TSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKK 119 (161)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHTTCC------HHH-HHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHH
Confidence 44477778765 589999999999997 456 99999999999999963211122 3556655543
No 304
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.28 E-value=0.13 Score=38.32 Aligned_cols=62 Identities=6% Similarity=0.072 Sum_probs=43.6
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCccccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAY 106 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~ 106 (244)
++.|+..|... +++|..+||+.++++ ... +.++++.|...|++.+.....++ .+.+|+.+..
T Consensus 45 ~~~iL~~l~~~---~~~t~~ela~~l~i~------~~t-vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~ 109 (155)
T 3cdh_A 45 EWRVLACLVDN---DAMMITRLAKLSLME------QSR-MTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRA 109 (155)
T ss_dssp HHHHHHHHSSC---SCBCHHHHHHHTTCC------HHH-HHHHHHHHHHTTSEEECC------CCCEEECHHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHH
Confidence 34467777664 689999999999997 456 99999999999999853211112 2556665543
No 305
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=94.20 E-value=0.03 Score=41.52 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=46.3
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAYF 107 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~l 107 (244)
.++.++..|... +++|..+||+.++++ +.. +.++++.|...|++++.....+. .+.+|+.+..+
T Consensus 32 ~q~~iL~~l~~~---~~~t~~eLa~~l~~~------~~t-vs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~ 98 (145)
T 3g3z_A 32 NLFAVLYTLATE---GSRTQKHIGEKWSLP------KQT-VSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAY 98 (145)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHH
Confidence 345577778775 589999999999997 456 99999999999999963211122 35666655433
No 306
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=94.18 E-value=0.031 Score=41.55 Aligned_cols=61 Identities=10% Similarity=0.113 Sum_probs=43.9
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSA 105 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~ 105 (244)
++.++..|... ++.|..+||+.++++ ... +.++++.|...|++.......++ .+.+|+.+.
T Consensus 44 ~~~iL~~l~~~---~~~t~~ela~~l~~~------~~t-vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~ 107 (150)
T 2rdp_A 44 QFVALQWLLEE---GDLTVGELSNKMYLA------CST-TTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGE 107 (150)
T ss_dssp HHHHHHHHHHH---CSBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEEECCC---CEEEEECHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCCC------chh-HHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHH
Confidence 34467777765 589999999999997 456 99999999999999863211122 255555554
No 307
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=94.15 E-value=0.031 Score=46.34 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=33.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-h-------HHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-P-------YVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p-------~vi~~a~~ 234 (244)
.....+|+|+|||.|.++..+++. ..+++.+|+ | ..++.+++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~ 130 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALL 130 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHh
Confidence 344578999999999999999986 568999998 6 55665543
No 308
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=94.15 E-value=0.037 Score=40.98 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=51.6
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhC-CCCCCCCcchhccHHHHHHHHhhCCccccee
Q 041256 13 NFSYAMELASAIVLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQI-PLKDNNPEAAAMTLDRVLRLLVSYNALHCSF 91 (244)
Q Consensus 13 ~~~~l~~~~~g~~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~-~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~ 91 (244)
....+++++.+.|...+ ...|.. |+++..||++.+ |++ +.. +.+.|+.|...|++++..
T Consensus 24 ~~~~~l~~l~~~w~l~I---------L~~L~~----g~~~~~eLa~~l~gis------~~t-ls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 24 PSREVLKHVTSRWGVLI---------LVALRD----GTHRFSDLRRXMGGVS------EXM-LAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp THHHHHHHHHSHHHHHH---------HHHGGG----CCEEHHHHHHHSTTCC------HHH-HHHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHcCCcHHHH---------HHHHHc----CCCCHHHHHHHhccCC------HHH-HHHHHHHHHHCCcEEEEe
Confidence 34455555555555443 334543 689999999999 797 456 999999999999999643
Q ss_pred ecCC---ceeecCccccccc
Q 041256 92 VDGQ---RLYSLAPVSAYFV 108 (244)
Q Consensus 92 ~~~~---~~y~~t~~s~~l~ 108 (244)
...+ -.|++|+.++.+.
T Consensus 84 ~~~d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 84 YPVVPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp ECSSSCEEEEEECHHHHHHH
T ss_pred cCCCCCeEEEEECccHHHHH
Confidence 2211 2588888765443
No 309
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.13 E-value=0.025 Score=41.57 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=45.2
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCce---eecCcccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRL---YSLAPVSA 105 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---y~~t~~s~ 105 (244)
.++.++..|... +++|..+||+.++++ ... +.++++.|...|++.+.....+.+ +.+|+.+.
T Consensus 37 ~~~~iL~~l~~~---~~~t~~ela~~l~~s------~~~-vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~ 101 (142)
T 2fbi_A 37 QQWRVIRILRQQ---GEMESYQLANQACIL------RPS-MTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQ 101 (142)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHTTCC------HHH-HHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCCC------HhH-HHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHH
Confidence 355577777775 589999999999997 456 999999999999998642222222 55555544
No 310
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=94.11 E-value=0.085 Score=40.56 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=38.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcc
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPV 103 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~ 103 (244)
++.|.++||+.++++ +.. ++++|..|...|++.-. +...|.|++..-
T Consensus 27 ~~~s~~~IA~~~~is------~~~-l~kil~~L~~aGlv~s~-rG~~GGy~Lar~ 73 (162)
T 3k69_A 27 SKVASRELAQSLHLN------PVM-IRNILSVLHKHGYLTGT-VGKNGGYQLDLA 73 (162)
T ss_dssp SCBCHHHHHHHHTSC------GGG-THHHHHHHHHTTSSEEE-CSTTCEEECCSC
T ss_pred CCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEee-cCCCCCeEecCC
Confidence 589999999999997 568 99999999999999742 222467888653
No 311
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=94.10 E-value=0.027 Score=41.91 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=39.1
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
.++.++..|... +++|..+||+.++++ +.. +.++++.|...|++.+.
T Consensus 41 ~~~~iL~~l~~~---~~~t~~ela~~l~~~------~~t-vs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 41 TEWRIISVLSSA---SDCSVQKISDILGLD------KAA-VSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHHHHHHS---SSBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEee
Confidence 345577778775 589999999999997 556 99999999999999863
No 312
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=93.97 E-value=0.051 Score=48.17 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=33.2
Q ss_pred CcceEEEecCC------ccHHHHHHHHH-CCCCeEEEccchHHhhhCCCCCCceee
Q 041256 193 HVKKLVDVGGG------LGITLNMIISK-YPHIKGINYDLPYVIKDAPSYPGTLFI 241 (244)
Q Consensus 193 ~~~~vvDVGGG------~G~~~~~l~~~-~P~l~~~v~Dlp~vi~~a~~~~~i~~~ 241 (244)
+..+||||||| +|..+..++++ +|+.+++.+|+.+... ...++|+++
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--~~~~rI~fv 269 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--VDELRIRTI 269 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--GCBTTEEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--hcCCCcEEE
Confidence 45899999999 66667777765 5999999999943322 233566654
No 313
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=93.95 E-value=0.022 Score=42.17 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=44.8
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCccccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAY 106 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~ 106 (244)
.+..++..|... +++|..+||+.++++ +.. +.++++.|...|++++.+...+. .+.+|+.+..
T Consensus 38 ~~~~iL~~l~~~---~~~t~~eLa~~l~~~------~~~-vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~ 103 (143)
T 3oop_A 38 EQWSVLEGIEAN---EPISQKEIALWTKKD------TPT-VNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRK 103 (143)
T ss_dssp HHHHHHHHHHHH---SSEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCCC------Hhh-HHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHH
Confidence 344567777765 689999999999997 556 99999999999999863211122 3556665543
No 314
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=93.91 E-value=0.053 Score=37.89 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=41.5
Q ss_pred HHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCc
Q 041256 32 AVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (244)
Q Consensus 32 ~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~ 102 (244)
--.++.|+..|... ++.|+.|||+.+|++ ... +.+-|+.|... ++....+...-.|++++
T Consensus 26 ~~~Rl~IL~~l~~~---~~~~~~ela~~l~is------~st-vs~hL~~L~~~-lv~~~~~gr~~~y~l~~ 85 (99)
T 2zkz_A 26 HPMRLKIVNELYKH---KALNVTQIIQILKLP------QST-VSQHLCKMRGK-VLKRNRQGLEIYYSINN 85 (99)
T ss_dssp SHHHHHHHHHHHHH---SCEEHHHHHHHHTCC------HHH-HHHHHHHHBTT-TBEEEEETTEEEEECCC
T ss_pred CHHHHHHHHHHHHC---CCcCHHHHHHHHCcC------HHH-HHHHHHHHHHH-hhhheEeCcEEEEEECh
Confidence 34556677544443 689999999999997 456 99999999999 88753221112355554
No 315
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.88 E-value=0.044 Score=40.42 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=37.1
Q ss_pred cChhhHH-hhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 36 LDVFEII-SKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 36 lgifd~L-~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
+.++..| ... ++.|..+||+.++++ +.. +.++++.|...|++...
T Consensus 40 ~~iL~~l~~~~---~~~t~~~la~~l~~s------~~~-vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 40 WLVLLHLARHR---DSPTQRELAQSVGVE------GPT-LARLLDGLESQGLVRRL 85 (146)
T ss_dssp HHHHHHHHHCS---SCCBHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcC---CCCCHHHHHHHhCCC------hhh-HHHHHHHHHHCCCeeec
Confidence 3466777 443 689999999999997 456 99999999999999863
No 316
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=93.86 E-value=0.036 Score=47.11 Aligned_cols=32 Identities=19% Similarity=-0.036 Sum_probs=26.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL 225 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 225 (244)
+....+|||||||.|.++..++++ -+++.+|+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~ 111 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKG 111 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEec
Confidence 455689999999999999999988 36777787
No 317
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.85 E-value=0.15 Score=37.95 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=38.0
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
+.|+..|... ++.|..+||+.++++ ... +.++++.|...|++.+.
T Consensus 40 ~~iL~~l~~~---~~~t~~ela~~l~~s------~~t-vs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 40 LFVLASLKKH---GSLKVSEIAERMEVK------PSA-VTLMADRLEQKNLIART 84 (155)
T ss_dssp HHHHHHHHHH---SEEEHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEeec
Confidence 4477777765 589999999999997 456 99999999999999863
No 318
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=93.80 E-value=0.034 Score=41.03 Aligned_cols=63 Identities=10% Similarity=0.106 Sum_probs=45.7
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCccccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAY 106 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~ 106 (244)
.++.++..|... ++.|..+||+.++++ ... +.++++.|...|++.......+. .|.+|+.+..
T Consensus 34 ~~~~iL~~l~~~---~~~~~~~la~~l~~s------~~t-vs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~ 99 (145)
T 2a61_A 34 AQFDILQKIYFE---GPKRPGELSVLLGVA------KST-VTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEE 99 (145)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCCC------chh-HHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHH
Confidence 345577777765 589999999999997 456 99999999999999964211122 2556665543
No 319
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=93.79 E-value=0.05 Score=40.78 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=39.4
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
.++.|+..|... +++|..+||+.++++ ... +.++++.|...|++.+.
T Consensus 45 ~~~~iL~~l~~~---~~~t~~ela~~l~is------~~t-vs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 45 TELYAFLYVALF---GPKKMKEIAEFLSTT------KSN-VTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHTTSC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEee
Confidence 355677778765 589999999999997 456 99999999999999863
No 320
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=93.78 E-value=0.033 Score=41.10 Aligned_cols=60 Identities=7% Similarity=-0.013 Sum_probs=43.8
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSA 105 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~ 105 (244)
+.++..|... +++|..+||+.++++ ... +.++++.|...|++.......+. .+.+|+.+.
T Consensus 32 ~~iL~~l~~~---~~~t~~~la~~l~~s------~~~-vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~ 94 (144)
T 1lj9_A 32 YLYLVRVCEN---PGIIQEKIAELIKVD------RTT-AARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGK 94 (144)
T ss_dssp HHHHHHHHHS---TTEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHH
T ss_pred HHHHHHHHHC---cCcCHHHHHHHHCCC------HhH-HHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHH
Confidence 4467777765 589999999999997 456 99999999999999864211122 255555554
No 321
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=93.76 E-value=0.047 Score=38.11 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=40.9
Q ss_pred CCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccccccc
Q 041256 51 LSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYFV 108 (244)
Q Consensus 51 ~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 108 (244)
++..+||..+|++ ++. +.+.++.|...|++.+ . .+.|.+|+.+..+.
T Consensus 21 ~~~t~La~~~~ls------~~~-~~~~l~~L~~~GLI~~---~-~~~~~LT~kG~~~l 67 (95)
T 1r7j_A 21 SPKTRIMYGANLS------YAL-TGRYIKMLMDLEIIRQ---E-GKQYMLTKKGEELL 67 (95)
T ss_dssp BCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE---E-TTEEEECHHHHHHH
T ss_pred CCHHHHHHHhCcC------HHH-HHHHHHHHHHCCCeEE---E-CCeeEEChhHHHHH
Confidence 8999999999997 667 9999999999999995 3 36699999987554
No 322
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=93.70 E-value=0.049 Score=39.19 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=39.0
Q ss_pred HHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 33 VVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 33 a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
-.++.|+..|.+ ++.|..+||+.++++ ... +.+.|+.|...|++..
T Consensus 32 ~~~~~il~~L~~----~~~s~~ela~~l~is------~st-vsr~l~~Le~~Glv~~ 77 (119)
T 2lkp_A 32 PSRLMILTQLRN----GPLPVTDLAEAIGME------QSA-VSHQLRVLRNLGLVVG 77 (119)
T ss_dssp HHHHHHHHHHHH----CCCCHHHHHHHHSSC------HHH-HHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHH----CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEE
Confidence 456677788877 479999999999997 456 9999999999999985
No 323
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=93.69 E-value=0.021 Score=49.16 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=35.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCC-----CeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPH-----IKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~-----l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|+|+|||+|.++..+++..|. .+++.+|+ |..++.|+.
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~ 177 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALV 177 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHH
Confidence 35589999999999999999998875 67899998 777776653
No 324
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=93.63 E-value=0.027 Score=50.15 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=38.3
Q ss_pred HhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCC
Q 041256 185 LESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 185 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 233 (244)
...++ .....+|+|+|||.|..+..+++..|+.+++.+|. |..++.++
T Consensus 239 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~ 287 (429)
T 1sqg_A 239 MTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY 287 (429)
T ss_dssp HHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH
T ss_pred HHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 33444 45567999999999999999999999988999998 55565554
No 325
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=93.61 E-value=0.055 Score=47.56 Aligned_cols=52 Identities=13% Similarity=0.029 Sum_probs=40.6
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEEc
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPH--------------------------------------IKGINY 223 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~v~ 223 (244)
..++.... |.....|+|.+||+|.++++.+....+ .+++.+
T Consensus 184 aall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~Gv 262 (384)
T 3ldg_A 184 AAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGF 262 (384)
T ss_dssp HHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred HHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEE
Confidence 34555555 777789999999999999998875444 568999
Q ss_pred cc-hHHhhhCCC
Q 041256 224 DL-PYVIKDAPS 234 (244)
Q Consensus 224 Dl-p~vi~~a~~ 234 (244)
|. |.+++.|++
T Consensus 263 Did~~al~~Ar~ 274 (384)
T 3ldg_A 263 DFDGRMVEIARK 274 (384)
T ss_dssp ESCHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 98 888888764
No 326
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=93.53 E-value=0.064 Score=40.34 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=35.0
Q ss_pred CHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCc
Q 041256 52 SVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (244)
Q Consensus 52 t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~ 102 (244)
|.++||+..+++ +.. ++++|..|...|++... .|.|.|.++.
T Consensus 25 s~~~IA~~~~i~------~~~-l~kIl~~L~~aGlv~s~--rG~GGy~Lar 66 (145)
T 1xd7_A 25 SSEIIADSVNTN------PVV-VRRMISLLKKADILTSR--AGVPGASLKK 66 (145)
T ss_dssp CHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEECC--SSSSSCEESS
T ss_pred CHHHHHHHHCcC------HHH-HHHHHHHHHHCCceEee--cCCCCceecC
Confidence 999999999997 678 99999999999999842 2356677755
No 327
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=93.43 E-value=0.045 Score=48.02 Aligned_cols=41 Identities=15% Similarity=-0.023 Sum_probs=36.5
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 194 VKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 194 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+|+|+|+|+|..++.++++.|..+++..|+ |..++.+++
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~ 89 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKR 89 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH
Confidence 47899999999999999999999889999998 888777764
No 328
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=93.40 E-value=0.045 Score=41.30 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=38.5
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
++.|+..|... +++|..+||+.++++ ... +.++++.|...|++.+
T Consensus 51 ~~~iL~~l~~~---~~~t~~ela~~l~is------~~t-vs~~l~~Le~~glv~r 95 (162)
T 2fa5_A 51 EWRVITILALY---PGSSASEVSDRTAMD------KVA-VSRAVARLLERGFIRR 95 (162)
T ss_dssp HHHHHHHHHHS---TTCCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEee
Confidence 44577788775 689999999999997 456 9999999999999986
No 329
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=93.39 E-value=0.036 Score=41.07 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=47.8
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccccccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAYFVR 109 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~l~~ 109 (244)
.++.++..|... ++.|..+||+.++++ ... +.++++.|...|++.+.....++ .+.+|+.+..+..
T Consensus 41 ~~~~iL~~l~~~---~~~~~~~la~~l~~~------~~t-vs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 41 PQYLALLLLWEH---ETLTVKKMGEQLYLD------SGT-LTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHTTTCC------HHH-HHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCCC------cCc-HHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 345567777765 589999999999997 456 99999999999999863211112 3677777765443
No 330
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=93.38 E-value=0.19 Score=37.31 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=36.6
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
..++..| .. +++|..+||+.++++ +.. +.++++.|...|++.+
T Consensus 41 ~~iL~~l-~~---~~~t~~eLa~~l~~~------~~~-vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 41 SHVLNML-SI---EALTVGQITEKQGVN------KAA-VSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHHHHHH-HH---SCBCHHHHHHHHCSC------SSH-HHHHHHHHHHTTSEEC
T ss_pred HHHHHHH-Hc---CCcCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEe
Confidence 3477778 54 699999999999997 345 9999999999999995
No 331
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=93.37 E-value=0.045 Score=41.36 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=39.5
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
.++.|+..|... +++|..+||+.++++ ... +.++++.|...|++.+.
T Consensus 53 ~~~~iL~~l~~~---~~~t~~ela~~l~is------~~t-vs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 53 AKMRALAILSAK---DGLPIGTLGIFAVVE------QST-LSRALDGLQADGLVRRE 99 (162)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCCC------hhH-HHHHHHHHHHCCCEEec
Confidence 345577888775 689999999999997 456 99999999999999863
No 332
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=93.35 E-value=0.043 Score=40.28 Aligned_cols=65 Identities=9% Similarity=0.045 Sum_probs=45.2
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAYF 107 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~l 107 (244)
++.++..|...+. +++|..+||+.++++ +.. +.++++.|...|++++.....++ .+.+|+.+..+
T Consensus 33 ~~~vL~~l~~~~~-~~~t~~ela~~l~~~------~~t-vs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~ 100 (139)
T 3eco_A 33 QGHTLGYLYAHQQ-DGLTQNDIAKALQRT------GPT-VSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKL 100 (139)
T ss_dssp HHHHHHHHHHSTT-TCEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHH
T ss_pred HHHHHHHHHhcCC-CCcCHHHHHHHhCCC------ccc-HHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHH
Confidence 4456777776521 489999999999997 456 99999999999999964222222 24555555433
No 333
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=93.27 E-value=0.041 Score=41.55 Aligned_cols=61 Identities=8% Similarity=0.069 Sum_probs=43.5
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCccccc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAY 106 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~ 106 (244)
+.++..|... +++|..+||+.++++ +.. +.++++.|...|++++.....+. .+.+|+.+..
T Consensus 53 ~~vL~~l~~~---~~~t~~eLa~~l~~~------~~t-vs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~ 116 (159)
T 3s2w_A 53 FPFLMRLYRE---DGINQESLSDYLKID------KGT-TARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKK 116 (159)
T ss_dssp HHHHHHHHHS---CSEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHH
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHH
Confidence 3456677665 689999999999997 556 99999999999999964211122 3556655543
No 334
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=93.23 E-value=0.024 Score=41.93 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=42.9
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccccc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAYF 107 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~l 107 (244)
+.+...|... +++|..+||+.++++ +.. +.++++.|...|++++.+...+. .+.+|+.++.+
T Consensus 39 ~~vL~~l~~~---~~~t~~eLa~~l~~~------~~t-vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~ 103 (140)
T 3hsr_A 39 YIVLMAIEND---EKLNIKKLGERVFLD------SGT-LTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAI 103 (140)
T ss_dssp HHHHHHSCTT---CEEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEEC-------CEEEECHHHHHT
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHCCC------hhh-HHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHH
Confidence 3355556543 689999999999997 556 99999999999999963211122 35666655533
No 335
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=93.21 E-value=0.055 Score=39.81 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=45.0
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSA 105 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~ 105 (244)
.++.|+..|... +++|..+||+.++++ ... +.+.++.|...|++.......++ .+.+|+.+.
T Consensus 38 ~~~~iL~~l~~~---~~~~~~ela~~l~~~------~~t-vs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~ 102 (142)
T 2bv6_A 38 PQFLVLTILWDE---SPVNVKKVVTELALD------TGT-VSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSE 102 (142)
T ss_dssp HHHHHHHHHHHS---SEEEHHHHHHHTTCC------TTT-HHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCCC------hhh-HHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHH
Confidence 345577778775 589999999999997 445 99999999999999864211112 355565554
No 336
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=93.18 E-value=0.012 Score=48.69 Aligned_cols=41 Identities=15% Similarity=0.048 Sum_probs=29.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 233 (244)
.+..+|||||||.|.++..++...- -+++..|+ |..++.++
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~ 95 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELE 95 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHH
Confidence 4558999999999987765544322 25788998 77777654
No 337
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=93.14 E-value=0.051 Score=41.55 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=43.6
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCccccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAY 106 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~ 106 (244)
++.|+..|...+ +++|..+||+.++++ ... +.++++.|...|++++.....+. .+.+|+.++.
T Consensus 55 q~~vL~~L~~~~--~~~t~~eLa~~l~i~------~~t-vs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~ 120 (166)
T 3deu_A 55 HWVTLHNIHQLP--PDQSQIQLAKAIGIE------QPS-LVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEP 120 (166)
T ss_dssp HHHHHHHHHHSC--SSEEHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEEEC--------CEEEECGGGHH
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCCC------Hhh-HHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHH
Confidence 445677777632 579999999999997 556 99999999999999963211122 3556665543
No 338
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=93.12 E-value=0.084 Score=43.82 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=32.5
Q ss_pred HHHhhcCCCCCc--ceEEEecCCccHHHHHHHHHCCCCeEEEccchH
Q 041256 183 KVLESYKGFEHV--KKLVDVGGGLGITLNMIISKYPHIKGINYDLPY 227 (244)
Q Consensus 183 ~~~~~~~~~~~~--~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~ 227 (244)
.+.+... ..+. .+|+|+|||.|..+..++++ +.+++.+|.-.
T Consensus 77 ~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~ 120 (258)
T 2oyr_A 77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNP 120 (258)
T ss_dssp HHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCH
T ss_pred HHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCH
Confidence 3444444 4444 79999999999999999998 55799999843
No 339
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=93.10 E-value=0.063 Score=37.37 Aligned_cols=46 Identities=15% Similarity=0.377 Sum_probs=38.1
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
++.|+..|... ++.|..+||+.++++ ... +.+.|+.|...|++...
T Consensus 22 ~~~il~~l~~~---~~~s~~ela~~l~is------~~t-v~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 22 DVRIYSLLLER---GGMRVSEIARELDLS------ARF-VRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHH---CCBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEEE
Confidence 44566777654 589999999999997 456 99999999999999863
No 340
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=93.09 E-value=0.084 Score=38.62 Aligned_cols=63 Identities=8% Similarity=0.160 Sum_probs=44.2
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSA 105 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~ 105 (244)
++.++..|...+ ++++|..+||+.++++ +.. +.++++.|...|++.+.+...+. .+.+|+.+.
T Consensus 36 ~~~iL~~l~~~~-~~~~~~~ela~~l~~~------~~t-vs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~ 101 (141)
T 3bro_A 36 QMTIIDYLSRNK-NKEVLQRDLESEFSIK------SST-ATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKAN 101 (141)
T ss_dssp HHHHHHHHHHTT-TSCCBHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHH
T ss_pred HHHHHHHHHHCC-CCCcCHHHHHHHHCCC------cch-HHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHH
Confidence 344677777753 1279999999999997 456 99999999999999864211122 355555544
No 341
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=93.09 E-value=0.046 Score=40.70 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=38.8
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
++.|+..|... +++|..+||+.++++ ... +.++++.|...|++.+.
T Consensus 42 ~~~iL~~l~~~---~~~t~~ela~~l~~~------~~~-vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 42 QRAILEGLSLT---PGATAPQLGAALQMK------RQY-ISRILQEVQRAGLIERR 87 (152)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCeeec
Confidence 44577778775 589999999999997 456 99999999999999963
No 342
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=93.00 E-value=0.066 Score=39.52 Aligned_cols=45 Identities=16% Similarity=0.342 Sum_probs=37.2
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
.+..|+..|... + +|..+||+.++++ ... +.++++.|...|++.+
T Consensus 39 ~~~~iL~~l~~~---~-~t~~eLa~~l~~s------~~t-vs~~l~~L~~~Glv~r 83 (146)
T 3tgn_A 39 TQEHILMLLSEE---S-LTNSELARRLNVS------QAA-VTKAIKSLVKEGMLET 83 (146)
T ss_dssp HHHHHHHHHTTC---C-CCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHhC---C-CCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCeEe
Confidence 345566777663 4 9999999999997 456 9999999999999986
No 343
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=92.90 E-value=0.11 Score=36.85 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=36.7
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
++.|+..+...| .+.|..+||+.+|++ ... +++.|+.|...|++..
T Consensus 20 ~l~Il~~l~~~g--~~~s~~eLa~~lgvs------~~t-V~~~L~~L~~~GlV~~ 65 (110)
T 1q1h_A 20 VIDVLRILLDKG--TEMTDEEIANQLNIK------VND-VRKKLNLLEEQGFVSY 65 (110)
T ss_dssp THHHHHHHHHHC--SCBCHHHHHHTTTSC------HHH-HHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEE
Confidence 345666665432 379999999999997 445 9999999999999985
No 344
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=92.89 E-value=0.038 Score=41.31 Aligned_cols=47 Identities=13% Similarity=0.103 Sum_probs=38.9
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
.++.|...|... +++|..+||+.++++ +.. +.++++.|...|++++.
T Consensus 42 ~q~~iL~~l~~~---~~~~~~eLa~~l~~~------~~~-vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 42 SQYLVMLTLWEE---NPQTLNSIGRHLDLS------SNT-LTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp HHHHHHHHHHHS---SSEEHHHHHHHHTCC------HHH-HHHHHHHHHHHTSEEC-
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEeeC
Confidence 345577777765 689999999999997 556 99999999999999963
No 345
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=92.87 E-value=0.067 Score=39.93 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=46.6
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccccccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAYFVR 109 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~l~~ 109 (244)
++.|+..|... +++|..+||+.++++ ... +.++++.|...|++.+.....+. .+.+|+.+..+..
T Consensus 49 ~~~iL~~l~~~---~~~t~~ela~~l~~s------~~t-vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 49 QYLVMLVLWET---DERSVSEIGERLYLD------SAT-LTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHS---CSEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHhCCC------ccc-HHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence 44577777775 689999999999997 456 99999999999999863211112 4677777664443
No 346
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=92.83 E-value=0.12 Score=45.03 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=32.0
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 195 KKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 195 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+|+|+|||.|.++..+++.. -+++.+|. |..++.|++
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~ 253 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQY 253 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHH
T ss_pred CEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHH
Confidence 679999999999999988754 46888998 888888764
No 347
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=92.77 E-value=0.079 Score=39.01 Aligned_cols=48 Identities=4% Similarity=-0.053 Sum_probs=39.6
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcccccc
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYF 107 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l 107 (244)
++.|..+||+.++++ ... +.+.|+.|...|++.+ .. ..|.+|+.+..+
T Consensus 30 ~~~s~~ela~~l~is------~~t-v~~~l~~Le~~Gli~r---~~-~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 30 EGAKINRIAKDLKIA------PSS-VFEEVSHLEEKGLVKK---KE-DGVWITNNGTRS 77 (139)
T ss_dssp SCBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE---ET-TEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCCC------hHH-HHHHHHHHHHCCCEEe---cC-CeEEEChhHHHH
Confidence 689999999999997 456 9999999999999995 22 668888776543
No 348
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=92.77 E-value=0.043 Score=46.12 Aligned_cols=43 Identities=23% Similarity=0.156 Sum_probs=35.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
+....+|+|+|||.|.+++.++++ ...+++..|+ |..++.+++
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~ 166 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVE 166 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHH
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHH
Confidence 345689999999999999999876 4568999999 888888764
No 349
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=92.77 E-value=0.054 Score=47.37 Aligned_cols=40 Identities=13% Similarity=-0.016 Sum_probs=34.9
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|+|+|||+|.++..+++. ..+++.+|. |..++.+++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~ 249 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEE 249 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHH
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHH
Confidence 5679999999999999999998 567899998 888888764
No 350
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=92.72 E-value=0.047 Score=41.06 Aligned_cols=46 Identities=9% Similarity=0.211 Sum_probs=37.6
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
++.|+..|...+ +++|..+||+.++++ ... +.++++.|...|++.+
T Consensus 49 ~~~iL~~L~~~~--~~~~~~ela~~l~i~------~~t-vs~~l~~Le~~Gli~r 94 (160)
T 3boq_A 49 KFDAMAQLARNP--DGLSMGKLSGALKVT------NGN-VSGLVNRLIKDGMVVK 94 (160)
T ss_dssp HHHHHHHHHHCT--TCEEHHHHHHHCSSC------CSC-HHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCCC------hhh-HHHHHHHHHHCCCEEe
Confidence 455778884322 689999999999997 445 9999999999999986
No 351
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=92.72 E-value=0.064 Score=35.93 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=36.7
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCC----CCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIP----LKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~----~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
+..|.+.|.+. ++.|..||++.++ ++ +.- +.++|+.|...|++.+.
T Consensus 11 e~~vL~~L~~~---~~~t~~ei~~~l~~~~~~s------~~T-v~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 11 ELEVMKVIWKH---SSINTNEVIKELSKTSTWS------PKT-IQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHTS---SSEEHHHHHHHHHHHSCCC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcC---CCCCHHHHHHHHhhcCCcc------HHH-HHHHHHHHHHCCCeEEE
Confidence 45566777664 6899999999997 43 345 99999999999999964
No 352
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=92.71 E-value=0.24 Score=42.75 Aligned_cols=60 Identities=18% Similarity=0.198 Sum_probs=47.9
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHhhhCCCC--CCceee
Q 041256 181 MEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKY-PHIKGINYDL-PYVIKDAPSY--PGTLFI 241 (244)
Q Consensus 181 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~--~~i~~~ 241 (244)
...+++.+. ......+||...|.|..+.+|+++. |+.+.+.+|. |++++.++.+ ++++++
T Consensus 46 l~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv 109 (347)
T 3tka_A 46 LDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSII 109 (347)
T ss_dssp THHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEE
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEE
Confidence 356777776 5667899999999999999999985 8899999998 8888887543 345443
No 353
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=92.63 E-value=0.11 Score=34.63 Aligned_cols=55 Identities=16% Similarity=0.299 Sum_probs=44.6
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecC
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t 101 (244)
+-.|++.|.+.| .|++..+||+.+|++ ..- +.+.|..|-..|.+.. +..-.|.++
T Consensus 21 eekVLe~LkeaG--~PlkageIae~~Gvd------KKe-VdKaik~LKkEgkI~S---PkRCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAG--SPVKLAQLVKECQAP------KRE-LNQVLYRMKKELKVSL---TSPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHT--SCEEHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEEE---EETTEEEES
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCCC------HHH-HHHHHHHHHHcCCccC---CCCceeeCC
Confidence 456888999987 799999999999996 344 9999999999999884 234677765
No 354
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=92.53 E-value=0.13 Score=38.68 Aligned_cols=62 Identities=16% Similarity=0.100 Sum_probs=43.5
Q ss_pred ChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccccc
Q 041256 37 DVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAYF 107 (244)
Q Consensus 37 gifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~l 107 (244)
.+.-.|...+ ++.+..+||+.++++ +.. +.++++-|...|++.+.+.+.+. ...+|+.+..+
T Consensus 35 ~vL~~L~~~~--~~~~~~eLa~~l~~~------~~t-vs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~ 99 (151)
T 4aik_A 35 VTLYNINRLP--PEQSQIQLAKAIGIE------QPS-LVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPI 99 (151)
T ss_dssp HHHHHHHHSC--TTSCHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHH
T ss_pred HHHHHHHHcC--CCCcHHHHHHHHCcC------HHH-HHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHH
Confidence 3455565543 467889999999997 556 99999999999999864322223 25566655533
No 355
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=92.31 E-value=0.081 Score=47.69 Aligned_cols=44 Identities=5% Similarity=0.006 Sum_probs=36.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPH-IKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~ 234 (244)
.....+|+|+|||.|..+..+++..++ .+++.+|+ |..++.+++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~ 144 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLE 144 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 455689999999999999999999876 68899998 777776654
No 356
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=92.25 E-value=0.13 Score=40.93 Aligned_cols=66 Identities=12% Similarity=0.176 Sum_probs=47.2
Q ss_pred HHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeec----C-CceeecCc
Q 041256 28 AVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVD----G-QRLYSLAP 102 (244)
Q Consensus 28 ~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~----~-~~~y~~t~ 102 (244)
.+|..-.++.|+..|.. +|.|..+||+.+|++ ... +.+.|+.|...|++...... + .-.|++|+
T Consensus 10 kaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~is------~st-vs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~ 78 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK----RPYFVSELSRELGVG------QKA-VLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKK 78 (202)
T ss_dssp HHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECT
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCceEEEeeccCCCCceEEEEECh
Confidence 34444455666777765 699999999999997 456 99999999999999864321 1 12466666
Q ss_pred cc
Q 041256 103 VS 104 (244)
Q Consensus 103 ~s 104 (244)
..
T Consensus 79 ~~ 80 (202)
T 2p4w_A 79 GL 80 (202)
T ss_dssp TE
T ss_pred HH
Confidence 54
No 357
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=92.24 E-value=0.078 Score=38.64 Aligned_cols=63 Identities=11% Similarity=0.172 Sum_probs=43.9
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCccccc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAY 106 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~ 106 (244)
..+...|...+ +++.|..+||+.++++ +.. +.++++-|...|++.+.+...+. .+.+|+.++.
T Consensus 40 ~~vL~~l~~~~-~~~~t~~eLa~~l~~~------~~t-vs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~ 105 (127)
T 2frh_A 40 FAVLTYISENK-EKEYYLKDIINHLNYK------QPQ-VVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRK 105 (127)
T ss_dssp HHHHHHHHHTC-CSEEEHHHHHHHSSSH------HHH-HHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHH
T ss_pred HHHHHHHHhcc-CCCcCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHH
Confidence 44666666541 1589999999999996 456 99999999999999863212222 2556665543
No 358
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=92.15 E-value=0.065 Score=47.23 Aligned_cols=40 Identities=13% Similarity=-0.066 Sum_probs=33.5
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|+|+|||+|.++..+++... +++.+|+ |..++.+++
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~ 254 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQ 254 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHH
T ss_pred CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHH
Confidence 368999999999999999999754 4899998 777777764
No 359
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=92.14 E-value=0.068 Score=47.73 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=37.1
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHC-------------CCCeEEEccc-hHHhhhCC
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKY-------------PHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-------------P~l~~~v~Dl-p~vi~~a~ 233 (244)
.+++... .....+|+|.|||+|.++..+.+.. +..+.+.+|+ |..++.|+
T Consensus 162 ~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~ 225 (445)
T 2okc_A 162 AMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLAS 225 (445)
T ss_dssp HHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHH
T ss_pred HHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHH
Confidence 3344444 3445799999999999999988764 5567899998 77777664
No 360
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=92.13 E-value=0.08 Score=46.95 Aligned_cols=39 Identities=33% Similarity=0.422 Sum_probs=33.0
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 194 VKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 194 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+|+|+|||.|..+..+++.. .+++.+|. |..++.|++
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~ 133 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARH 133 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHH
Confidence 5899999999999999988874 58899998 777777754
No 361
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=92.11 E-value=0.079 Score=46.49 Aligned_cols=41 Identities=20% Similarity=0.009 Sum_probs=34.8
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|+|+|||.|.++..+++. +.-+++.+|+ |..++.+++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~ 258 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKE 258 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHH
Confidence 5589999999999999999987 4457899998 888887764
No 362
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=92.06 E-value=0.063 Score=46.15 Aligned_cols=40 Identities=20% Similarity=0.094 Sum_probs=34.0
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
....+|+|+|||+|.++.. ++ ...+++.+|+ |..++.+++
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~ 234 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKK 234 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHH
Confidence 3557999999999999999 76 5778999999 888888764
No 363
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=92.04 E-value=0.098 Score=36.81 Aligned_cols=50 Identities=32% Similarity=0.305 Sum_probs=37.7
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
+..|...|-+. +++|..||++.++.++ +. .+.- +.++|+-|+..|++.+.
T Consensus 37 e~~VL~~L~~~---~~~t~~eL~~~l~~~~-~~-s~sT-Vt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 37 ELIVMRVIWSL---GEARVDEIYAQIPQEL-EW-SLAT-VKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp CSHHHHHHHHH---SCEEHHHHHHTCCGGG-CC-CHHH-HHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHhccc-CC-CHhh-HHHHHHHHHHCCCEEEE
Confidence 45577888764 6899999999997520 00 0334 99999999999999964
No 364
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=91.88 E-value=0.082 Score=46.34 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=35.3
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+++|+=||||.|..+.++++. |.-+.+++|+ |.|++.+++
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~ 246 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKK 246 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHh
Confidence 4589999999999999999975 5578899998 999998764
No 365
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=91.83 E-value=0.11 Score=46.16 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=34.0
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+..+|+|+|||.|.++..+++. ..+++.+|. |..++.|++
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~ 330 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARR 330 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence 34579999999999999999987 447889998 788887764
No 366
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=91.74 E-value=0.082 Score=46.41 Aligned_cols=41 Identities=10% Similarity=-0.077 Sum_probs=34.5
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
+..+|+|+|||+|.++..+++.. .-+++.+|+ |..++.+++
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~ 261 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQ 261 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHH
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHH
Confidence 45799999999999999999875 457899998 788887764
No 367
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=91.63 E-value=0.14 Score=38.37 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=39.1
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
.+..|...|.+. ++.|..|||+.+|++ +.. +.+.++.|...|++..
T Consensus 4 ~~~~il~~L~~~---~~~~~~ela~~lg~s------~~t-v~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYN---AKYSLDEIAREIRIP------KAT-LSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTC---TTSCHHHHHHHHTSC------HHH-HHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCcEEE
Confidence 355678888764 689999999999997 556 9999999999999984
No 368
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=91.61 E-value=0.095 Score=39.44 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=42.3
Q ss_pred hhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcccccc
Q 041256 39 FEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYF 107 (244)
Q Consensus 39 fd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l 107 (244)
...|... ++.|..+||+.++++ ... +.+.|+.|...|++.. +. ...+.+|+.+..+
T Consensus 46 ~~~l~~~---~~~~~~~la~~l~vs------~~t-vs~~l~~Le~~Glv~r--~~-~~~~~lT~~g~~~ 101 (155)
T 2h09_A 46 SDLIREV---GEARQVDMAARLGVS------QPT-VAKMLKRLATMGLIEM--IP-WRGVFLTAEGEKL 101 (155)
T ss_dssp HHHHHHH---SCCCHHHHHHHHTSC------HHH-HHHHHHHHHHTTCEEE--ET-TTEEEECHHHHHH
T ss_pred HHHHHhC---CCcCHHHHHHHhCcC------HHH-HHHHHHHHHHCCCEEE--ec-CCceEEChhHHHH
Confidence 3355553 579999999999997 456 9999999999999985 22 3557777766543
No 369
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=91.57 E-value=0.083 Score=46.30 Aligned_cols=42 Identities=7% Similarity=-0.164 Sum_probs=34.4
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 192 EHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.+..+|+|+|||+|.++..++++. .-+++.+|+ |..++.|++
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~ 253 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLA 253 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHH
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHH
Confidence 445799999999999999999863 237899998 888888764
No 370
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=91.56 E-value=0.15 Score=38.02 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=38.5
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
+..|.+.|.+. ++.|..|||+.+|++ +.. +.+.++.|...|++..
T Consensus 7 d~~il~~L~~~---~~~s~~ela~~lg~s------~~t-v~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 7 DLNIIEELKKD---SRLSMRELGRKIKLS------PPS-VTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHC---SCCCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCeEE
Confidence 44678888775 689999999999997 556 9999999999999984
No 371
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=91.56 E-value=0.11 Score=35.77 Aligned_cols=51 Identities=6% Similarity=0.143 Sum_probs=38.0
Q ss_pred CCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecC-CceeecCccccccc
Q 041256 50 KLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDG-QRLYSLAPVSAYFV 108 (244)
Q Consensus 50 ~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~-~~~y~~t~~s~~l~ 108 (244)
++|..+||+.++++ ... +.++++.|...|++. ++.++ ...|.+|+.+..+.
T Consensus 30 ~~t~~eLa~~l~i~------~~t-vs~~l~~Le~~Glv~-~~~d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNSP------HSY-VWLIIKKFEEAKMVE-CELEGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSSC------HHH-HHHHHHHHHHTTSEE-EEEETTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCcC------HHH-HHHHHHHHHHCcCcc-CCCCCCeEEEEEChhHHHHH
Confidence 49999999999997 456 999999999999994 22211 12478887765443
No 372
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=91.53 E-value=0.16 Score=37.23 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=29.9
Q ss_pred CCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 50 KLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 50 ~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
..|..+||+.++++ +.- +.+.++.|...|++..
T Consensus 51 ~ps~~~LA~~l~~s------~~~-V~~~l~~Le~kGlI~~ 83 (128)
T 2vn2_A 51 FPTPAELAERMTVS------AAE-CMEMVRRLLQKGMIAI 83 (128)
T ss_dssp SCCHHHHHHTSSSC------HHH-HHHHHHHHHHTTSSEE
T ss_pred CCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEE
Confidence 47999999999997 556 9999999999999986
No 373
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=91.46 E-value=0.47 Score=31.44 Aligned_cols=52 Identities=4% Similarity=0.019 Sum_probs=38.0
Q ss_pred hhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecC
Q 041256 39 FEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (244)
Q Consensus 39 fd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t 101 (244)
++.|.+. +..|+.+||+++|++ ..- +.|+|.-|...|.+...+. .+-+|..+
T Consensus 21 i~~L~~~---~~~Ta~~IAkkLg~s------K~~-vNr~LY~L~kkG~V~~~~~-~PP~W~~~ 72 (75)
T 1sfu_A 21 VLSLNTN---DYTTAISLSNRLKIN------KKK-INQQLYKLQKEDTVKMVPS-NPPKWFKN 72 (75)
T ss_dssp HHTSCTT---CEECHHHHHHHTTCC------HHH-HHHHHHHHHHTTSEEEECC-SSCEEEEC
T ss_pred HHhCCCC---cchHHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEecCCC-CCCCccCC
Confidence 3455552 469999999999996 455 9999999999999986322 24455544
No 374
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=91.40 E-value=0.14 Score=45.96 Aligned_cols=44 Identities=11% Similarity=0.047 Sum_probs=36.0
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPH-IKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~ 234 (244)
.....+|+|+|+|.|..+..+++..++ -+++..|+ |..++.+++
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~ 148 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSE 148 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Confidence 455689999999999999999998765 68899998 666666653
No 375
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=91.37 E-value=0.19 Score=35.02 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=46.3
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHH-hCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccccccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVA-QIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYFV 108 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~-~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 108 (244)
++.|+-.|.+. ++.|..+||+ ..+++ ... +.|=++.|...|+++. .+++ +.+|+.++.+.
T Consensus 18 QfsiL~~L~~~---~~~t~~~Lae~~l~~d------rst-vsrnl~~L~r~GlVe~---~~~D-l~LT~~G~~~l 78 (95)
T 1bja_A 18 TATILITIAKK---DFITAAEVREVHPDLG------NAV-VNSNIGVLIKKGLVEK---SGDG-LIITGEAQDII 78 (95)
T ss_dssp HHHHHHHHHHS---TTBCHHHHHHTCTTSC------HHH-HHHHHHHHHTTTSEEE---ETTE-EEECHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHhccc------HHH-HHHHHHHHHHCCCeec---CCCC-eeeCHhHHHHH
Confidence 34456667775 5899999999 99996 456 9999999999999982 3445 78888776444
No 376
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=91.35 E-value=0.16 Score=38.08 Aligned_cols=45 Identities=11% Similarity=0.191 Sum_probs=38.3
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
+..|...|.+. ++.|..|||+.+|++ +.. +.+.++.|...|++.+
T Consensus 9 ~~~iL~~L~~~---~~~s~~ela~~lg~s------~~t-v~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 9 DRILVRELAAD---GRATLSELATRAGLS------VSA-VQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEE
Confidence 45677788775 689999999999997 556 9999999999999974
No 377
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=91.11 E-value=0.2 Score=42.01 Aligned_cols=44 Identities=20% Similarity=0.086 Sum_probs=33.2
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 041256 181 MEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL 225 (244)
Q Consensus 181 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 225 (244)
...+.+.+. +....+|||+|||.|.++.-.+++.|-..++.+|+
T Consensus 79 L~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~Gvdv 122 (282)
T 3gcz_A 79 LRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTL 122 (282)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEe
Confidence 345666664 67778999999999999999888777555555555
No 378
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=91.11 E-value=0.17 Score=38.47 Aligned_cols=45 Identities=13% Similarity=0.313 Sum_probs=38.5
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
+..|.+.|.+. +++|..|||+.+|++ +.. +.+.++.|...|++..
T Consensus 12 ~~~il~~L~~~---~~~s~~ela~~lg~s------~~t-v~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 12 DIKILQVLQEN---GRLTNVELSERVALS------PSP-CLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEee
Confidence 44677888775 689999999999997 556 9999999999999984
No 379
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=91.04 E-value=0.15 Score=39.86 Aligned_cols=68 Identities=6% Similarity=-0.015 Sum_probs=49.5
Q ss_pred HHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCC---ceeecCccccccc
Q 041256 33 VVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQ---RLYSLAPVSAYFV 108 (244)
Q Consensus 33 a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~---~~y~~t~~s~~l~ 108 (244)
..++.|...|...+ ++++|..+||+.++++ ... +.++++.|...|++.+.....+ -.+.+|+.+..+.
T Consensus 41 ~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is------~~t-vs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 111 (189)
T 3nqo_A 41 SRQYMTILSILHLP-EEETTLNNIARKMGTS------KQN-INRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVM 111 (189)
T ss_dssp HHHHHHHHHHHHSC-GGGCCHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CCCcCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 34566777777531 1689999999999997 456 9999999999999996432222 2477887776444
No 380
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=90.92 E-value=0.1 Score=39.71 Aligned_cols=65 Identities=9% Similarity=0.131 Sum_probs=43.3
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAYF 107 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~l 107 (244)
++.|+..|...+ ++++|..+||+.++++ +.. +.++++.|...|++++.....+. .+.+|+.++.+
T Consensus 48 q~~vL~~l~~~~-~~~~t~~eLa~~l~~~------~~t-vs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~ 115 (168)
T 3u2r_A 48 QYNTLRLLRSVH-PEGMATLQIADRLISR------APD-ITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKL 115 (168)
T ss_dssp HHHHHHHHHHHT-TSCEEHHHHHHHC---------CTH-HHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcCHHHHHHHHCCC------hhh-HHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHH
Confidence 445677777642 1589999999999997 445 99999999999999974322222 35666655533
No 381
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=90.64 E-value=0.2 Score=43.87 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=27.4
Q ss_pred cceEEEecCCccHHHHHH--------HHHC-------CCCeEEEccchH
Q 041256 194 VKKLVDVGGGLGITLNMI--------ISKY-------PHIKGINYDLPY 227 (244)
Q Consensus 194 ~~~vvDVGGG~G~~~~~l--------~~~~-------P~l~~~v~Dlp~ 227 (244)
.-+|+|+|||+|..+..+ .+++ |++++..-|||.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~ 101 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPS 101 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTT
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCc
Confidence 588999999999877665 3344 888889989984
No 382
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=90.60 E-value=0.2 Score=37.57 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=38.9
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
.+..|...|.+. ++.|..|||+.+|++ +.. +.+.++.|...|++..
T Consensus 10 ~d~~il~~L~~~---~~~s~~ela~~lg~s------~~t-v~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSEN---SRLTYRELADILNTT------RQR-IARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHTTSC------HHH-HHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEE
Confidence 345678888875 689999999999997 556 9999999999999983
No 383
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=90.59 E-value=0.2 Score=37.28 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=31.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
...|.++||+++|++ +.- +.++|+-|...||+...
T Consensus 50 ~~ps~~~LA~~~~~s------~~~-v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 50 YFPTPNQLQEGMSIS------VEE-CTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CSCCHHHHHTTSSSC------HHH-HHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEEE
Confidence 468999999999997 556 99999999999999963
No 384
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=90.59 E-value=0.2 Score=38.24 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=39.0
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALH 88 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~ 88 (244)
.+..|.+.|.+. +++|..+||+++|++ +.. +.+-++.|...|++.
T Consensus 4 ~d~~il~~L~~~---~~~s~~~la~~lg~s------~~t-v~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 4 LDRKILRILQED---STLAVADLAKKVGLS------TTP-CWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHTTC---SCSCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCee
Confidence 355678888875 799999999999997 556 999999999999998
No 385
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=90.55 E-value=0.87 Score=33.43 Aligned_cols=47 Identities=9% Similarity=0.040 Sum_probs=33.1
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
..++..|...+ ++++|..+||+.++++ +.. +.++++.|...|++.+.
T Consensus 44 ~~vL~~l~~~~-~~~~t~~eLa~~l~~~------~~~-vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 44 GRMIGYIYENQ-ESGIIQKDLAQFFGRR------GAS-ITSMLQGLEKKGYIERR 90 (148)
T ss_dssp HHHHHHHHHHT-TTCCCHHHHHHC------------C-HHHHHHHHHHTTSBCCC
T ss_pred HHHHHHHHhCC-CCCCCHHHHHHHHCCC------hhH-HHHHHHHHHHCCCEEee
Confidence 44666676642 1589999999999997 456 99999999999999863
No 386
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=90.54 E-value=0.2 Score=47.46 Aligned_cols=52 Identities=17% Similarity=0.030 Sum_probs=40.4
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHH------------------------------------------CCCCe
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISK------------------------------------------YPHIK 219 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~------------------------------------------~P~l~ 219 (244)
..++.... |.....|+|.+||+|.++++.+.. .|+.+
T Consensus 180 a~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~ 258 (703)
T 3v97_A 180 AAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH 258 (703)
T ss_dssp HHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence 34455555 777789999999999999987764 24467
Q ss_pred EEEccc-hHHhhhCCC
Q 041256 220 GINYDL-PYVIKDAPS 234 (244)
Q Consensus 220 ~~v~Dl-p~vi~~a~~ 234 (244)
++.+|. |.+++.|++
T Consensus 259 i~G~Did~~av~~A~~ 274 (703)
T 3v97_A 259 FYGSDSDARVIQRART 274 (703)
T ss_dssp EEEEESCHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHH
Confidence 899998 888888764
No 387
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=90.45 E-value=0.31 Score=44.00 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=35.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCC-CCeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYP-HIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~ 234 (244)
...+|+|+|||.|..+..+++..+ .-+++..|+ +..++.+++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~ 160 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHA 160 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 567999999999999999999976 478999998 666666553
No 388
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=90.40 E-value=0.25 Score=42.01 Aligned_cols=44 Identities=11% Similarity=0.084 Sum_probs=35.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-CCCeEEEccc-hHHhhhCCC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKY-PHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~ 234 (244)
.....+|+|+|+|.|..+..+++.. +.-+++.+|+ |..++.+++
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~ 145 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMAT 145 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence 4555799999999999999999985 5678999998 666666553
No 389
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=90.35 E-value=0.18 Score=37.90 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=38.4
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
+..|.+.|.+. ++.|..|||+.+|++ +.. +.+.++.|...|++..
T Consensus 9 ~~~il~~L~~~---~~~s~~ela~~lg~s------~~t-v~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 9 DKKIIKILQND---GKAPLREISKITGLA------EST-IHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHCSC------HHH-HHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCeEE
Confidence 45677888775 689999999999997 556 9999999999999983
No 390
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=90.29 E-value=0.075 Score=41.11 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=37.6
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
++.|+..|...+..+++|..+||+.++++ ... +.++++.|...|++++
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~is------~~t-vs~~l~~Le~~GlV~r 118 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAIS------GPS-TSNRIVRLLEKGLIER 118 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSCC------SGG-GSSHHHHHHHHTSEEC
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCcCEEe
Confidence 44577788775310139999999999997 345 8899999999999986
No 391
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=90.25 E-value=0.23 Score=38.38 Aligned_cols=46 Identities=13% Similarity=0.330 Sum_probs=39.0
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
.+..|.+.|.+. +++|..|||+++|++ +.. +.+.++.|...|++..
T Consensus 18 ~d~~IL~~L~~~---~~~s~~eLA~~lglS------~~t-v~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKD---ARLTISELSEQLKKP------EST-IHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEe
Confidence 345678888875 689999999999997 556 9999999999999973
No 392
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=90.24 E-value=0.24 Score=38.29 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=39.4
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
.+..|...|.+. ++.|..|||+++|++ +.. +.+-|+.|...|++..
T Consensus 28 ~d~~IL~~L~~~---~~~s~~eLA~~lglS------~~t-v~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 28 IDKKIIKILQND---GKAPLREISKITGLA------EST-IHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTSC------HHH-HHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCeEe
Confidence 455688888875 689999999999997 556 9999999999999983
No 393
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=90.18 E-value=0.31 Score=41.92 Aligned_cols=40 Identities=15% Similarity=0.360 Sum_probs=36.4
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDA 232 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a 232 (244)
+...||.+|||.......+...+|+++.+=+|+|+|++.-
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K 136 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELK 136 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHH
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHH
Confidence 4589999999999999999999999999999999998763
No 394
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=90.02 E-value=0.19 Score=37.77 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=38.5
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
+..|...|.+. ++.|..|||+++|++ +.. +.+.++.|...|++..
T Consensus 10 d~~il~~L~~~---~~~s~~ela~~lg~s------~~t-v~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 10 DRGILEALMGN---ARTAYAELAKQFGVS------PET-IHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHC---TTSCHHHHHHHHTSC------HHH-HHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHcCCcce
Confidence 44577888875 689999999999997 556 9999999999999984
No 395
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=89.85 E-value=0.12 Score=41.22 Aligned_cols=63 Identities=14% Similarity=0.018 Sum_probs=45.0
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAYF 107 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~l 107 (244)
++.|+..|... +++|..+||+.++++ ... +.++++.|...|++.+.....+. .+.+|+.+..+
T Consensus 50 q~~iL~~L~~~---~~~t~~eLa~~l~i~------~st-vs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~ 115 (207)
T 2fxa_A 50 EHHILWIAYQL---NGASISEIAKFGVMH------VST-AFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEV 115 (207)
T ss_dssp HHHHHHHHHHH---TSEEHHHHHHHTTCC------HHH-HHHHHHHHHHHTSEEEECC------CEEEECHHHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHH
Confidence 34466777765 589999999999997 456 99999999999999863211122 46666666533
No 396
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=89.81 E-value=0.1 Score=42.57 Aligned_cols=67 Identities=7% Similarity=0.207 Sum_probs=48.6
Q ss_pred HHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCC------ceeecC
Q 041256 28 AVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQ------RLYSLA 101 (244)
Q Consensus 28 ~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~------~~y~~t 101 (244)
.+|.--.++.|+..|.. +|+|+.+||+.+|++ ... +.+.|+.|...|++......+. -.|+++
T Consensus 7 kaL~~~~R~~IL~~L~~----g~~s~~ELa~~lglS------~st-Vs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt 75 (232)
T 2qlz_A 7 YILGNKVRRDLLSHLTC----MECYFSLLSSKVSVS------STA-VAKHLKIMEREGVLQSYEKEERFIGPTKKYYKIS 75 (232)
T ss_dssp HHHTSHHHHHHHHHHTT----TTTCSSSSCTTCCCC------HHH-HHHHHHHHHHTTSEEEEEECC-----CEEEEEEC
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEc
Confidence 34444556778888875 699999999999997 456 9999999999999985212211 137776
Q ss_pred cccc
Q 041256 102 PVSA 105 (244)
Q Consensus 102 ~~s~ 105 (244)
+.+.
T Consensus 76 ~~~~ 79 (232)
T 2qlz_A 76 IAKS 79 (232)
T ss_dssp CCEE
T ss_pred cchh
Confidence 6543
No 397
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=89.75 E-value=0.29 Score=38.57 Aligned_cols=51 Identities=6% Similarity=0.169 Sum_probs=41.6
Q ss_pred HHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 29 VMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 29 ~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
++....+..|...|.+ +++|..|||+.+|++ +.. +.+.|+.|...|++...
T Consensus 16 ~l~d~~~~~IL~~L~~----~~~s~~eLA~~lglS------~st-v~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 16 VMLEDTRRKILKLLRN----KEMTISQLSEILGKT------PQT-IYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHSHHHHHHHHHHTT----CCBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHHHc----CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEEE
Confidence 3334456678888874 689999999999997 556 99999999999999864
No 398
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=89.75 E-value=0.21 Score=36.78 Aligned_cols=45 Identities=16% Similarity=0.295 Sum_probs=37.5
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
+..|...|.+. ++.|..|||+.+|++ +.. +.+.|+.|...|++..
T Consensus 6 ~~~il~~L~~~---~~~~~~ela~~lg~s------~~t-v~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 6 DKIILEILEKD---ARTPFTEIAKKLGIS------ETA-VRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTSC------HHH-HHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEec
Confidence 44567778764 689999999999997 456 9999999999999973
No 399
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=89.72 E-value=0.24 Score=36.36 Aligned_cols=44 Identities=14% Similarity=0.285 Sum_probs=35.2
Q ss_pred hhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 38 VFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 38 ifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
++..|.... ++.|..|||+.+|++ ... +.++|+.|...|++.+.
T Consensus 31 il~~L~~~~--~~~t~~ela~~l~~~------~st-vs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 31 VYAILYLSD--KPLTISDIMEELKIS------KGN-VSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHCS--SCEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcC--CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEEE
Confidence 455554221 689999999999997 456 99999999999999963
No 400
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=89.69 E-value=0.23 Score=43.39 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=36.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCeEEEccchHHhhhCCCCCCceee
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDLPYVIKDAPSYPGTLFI 241 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~~i~~~ 241 (244)
+....++||+|++.|.++..++++ +.+++.+|.-+.-+.....++|+++
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~ 257 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWL 257 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEE
Confidence 345689999999999999999988 6789999974433333345666654
No 401
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=89.58 E-value=0.11 Score=38.85 Aligned_cols=50 Identities=8% Similarity=0.068 Sum_probs=36.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCce---eecCcccc
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRL---YSLAPVSA 105 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~---y~~t~~s~ 105 (244)
+++|..+||+.++++ +.. +.++++-|...|++++.+...+.+ ..+|+.++
T Consensus 50 ~~~t~~eLa~~l~~~------~~t-vs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~ 102 (147)
T 4b8x_A 50 GELPMSKIGERLMVH------PTS-VTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGR 102 (147)
T ss_dssp GEEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEEECC----CEEEEECHHHH
T ss_pred CCcCHHHHHHHHCCC------HHH-HHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHH
Confidence 689999999999997 556 999999999999999743222222 45555554
No 402
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=89.51 E-value=0.14 Score=35.14 Aligned_cols=61 Identities=16% Similarity=0.097 Sum_probs=41.5
Q ss_pred hhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhcc-HHHHHHHHhhCCcccceeecC-CceeecCcccccc
Q 041256 38 VFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMT-LDRVLRLLVSYNALHCSFVDG-QRLYSLAPVSAYF 107 (244)
Q Consensus 38 ifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~-l~rlLr~L~~~gll~~~~~~~-~~~y~~t~~s~~l 107 (244)
++..|...+ ++.|..|||+.++++ ..+ +.++++.|...|++..++.+. .-.+.+|+.+..+
T Consensus 20 ~L~~l~~~~--~~~t~~eLa~~l~is-------~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~ 82 (95)
T 2pg4_A 20 TLLEFEKKG--YEPSLAEIVKASGVS-------EKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRL 82 (95)
T ss_dssp HHHHHHHTT--CCCCHHHHHHHHCCC-------HHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHhcC--CCCCHHHHHHHHCCC-------chHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHH
Confidence 444555542 379999999999996 233 689999999999998432211 1236667666533
No 403
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=89.41 E-value=0.26 Score=39.43 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=42.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccccccc
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYFV 108 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 108 (244)
++.+..+||+.++++ +.. +.+.++.|...|++.+ + ....+.+|+.++.+.
T Consensus 19 ~~~~~~~lA~~l~vs------~~t-vs~~l~~Le~~GlV~r--~-~~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 19 NKITNKEIAQLMQVS------PPA-VTEMMKKLLAEELLIK--D-KKAGYLLTDLGLKLV 68 (214)
T ss_dssp SCCCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE--E-TTTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCCC------hhH-HHHHHHHHHHCCCEEE--e-cCCCeEECHHHHHHH
Confidence 789999999999997 456 9999999999999996 2 346789999887554
No 404
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=89.40 E-value=0.46 Score=34.82 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=39.5
Q ss_pred HHHhcChhhHHhhcCCCCCCCHHHHHHhC-----CCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 32 AVVELDVFEIISKAGPGAKLSVAEIVAQI-----PLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 32 ~a~~lgifd~L~~~~~~g~~t~~eLA~~~-----~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
+--+.-|++.|.+.+ ++.|++||.+.+ +++ ..- ++|.|+.|+..|++.+.
T Consensus 10 T~qR~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~is------~~T-VYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 10 TRQRAAISTLLETLD--DFRSAQELHDELRRRGENIG------LTT-VYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHCC--SCEEHHHHHHHHHHTTCCCC------HHH-HHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCC------Hhh-HHHHHHHHHHCCCEEEE
Confidence 344666888888653 689999999998 554 334 99999999999999864
No 405
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=89.37 E-value=0.38 Score=45.47 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=33.4
Q ss_pred chhhccCCchHHHHHHHHHHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHH
Q 041256 155 IYDYLGVDSRFNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMI 211 (244)
Q Consensus 155 ~~e~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l 211 (244)
.||.+++|+-+-..|.+|+... +.+.+++-.+.+.|+|||||+|-++...
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~a 427 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKI 427 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHH
T ss_pred HHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHH
Confidence 4677778887777888877541 2222221134579999999999997543
No 406
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=89.31 E-value=0.25 Score=37.41 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=27.5
Q ss_pred CCcceEEEecCCccH-HHHHHHHHCCCCeEEEccc-hHHhh
Q 041256 192 EHVKKLVDVGGGLGI-TLNMIISKYPHIKGINYDL-PYVIK 230 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~-~~~~l~~~~P~l~~~v~Dl-p~vi~ 230 (244)
....++||||+|.|. .+..|+++ -+..++..|+ |..++
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~ 73 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG 73 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc
Confidence 344799999999995 77666653 5677888887 54443
No 407
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=89.27 E-value=0.28 Score=33.90 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=31.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
++.|..|||+.+|++ ..- +.|.|+.|...|++.+.
T Consensus 35 ~~~t~~ela~~l~is------~~t-v~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 35 KPITSEELADIFKLS------KTT-VENSLKKLIELGLVVRT 69 (109)
T ss_dssp SCEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCeEee
Confidence 689999999999997 455 99999999999999963
No 408
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=89.12 E-value=0.36 Score=40.29 Aligned_cols=37 Identities=14% Similarity=-0.022 Sum_probs=27.2
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeE
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKG 220 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~ 220 (244)
.+.+..- +....+|||+|||.|.++..++++.|--.+
T Consensus 65 ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v 101 (277)
T 3evf_A 65 WFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGV 101 (277)
T ss_dssp HHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEE
T ss_pred HHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcc
Confidence 4444433 566679999999999999988887664443
No 409
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=89.03 E-value=0.51 Score=35.79 Aligned_cols=64 Identities=23% Similarity=0.202 Sum_probs=45.7
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCC-CCCCCCcchhccHHHHHHHHhhCCcccceeec----CCc----eeecCccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIP-LKDNNPEAAAMTLDRVLRLLVSYNALHCSFVD----GQR----LYSLAPVS 104 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~-~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~----~~~----~y~~t~~s 104 (244)
.++.|+..|...+ .+..|+++|++.++ ++ ..- ++|-|+.|+..|++.+.... +.| .|++|+.+
T Consensus 30 tR~~IL~~Ll~~p-~~~~ta~eL~~~l~~lS------~aT-VyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~G 101 (151)
T 3u1d_A 30 TRLDVLHQILAQP-DGVLSVEELLYRNPDET------EAN-LRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEG 101 (151)
T ss_dssp HHHHHHHHHHHST-TSCBCHHHHHHHCTTSC------HHH-HHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHH
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHhcCCCC------HHH-HHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHH
Confidence 4566677776643 24689999999998 76 345 99999999999999853111 012 57888877
Q ss_pred c
Q 041256 105 A 105 (244)
Q Consensus 105 ~ 105 (244)
+
T Consensus 102 r 102 (151)
T 3u1d_A 102 I 102 (151)
T ss_dssp H
T ss_pred H
Confidence 6
No 410
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=88.95 E-value=0.69 Score=34.54 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=38.0
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhC-----CCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQI-----PLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~-----~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
-+.-|++.|.+.+ ++.|++||.+.+ +++ ..- ++|.|+.|+..|++.+.
T Consensus 23 qR~~Il~~L~~~~--~~~sa~ei~~~l~~~~~~is------~aT-VYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 23 QRHAILEYLVNSM--AHPTADDIYKALEGKFPNMS------VAT-VYNNLRVFRESGLVKEL 75 (145)
T ss_dssp HHHHHHHHHHHCS--SCCCHHHHHHHHGGGCTTCC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCC------hhh-HHHHHHHHHHCCCEEEE
Confidence 3455888887753 689999999998 443 334 99999999999999864
No 411
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=88.90 E-value=0.34 Score=40.71 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=36.7
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++.+. .....|+|++||+|..+.++++. +-+++.+|+ |..++.|++
T Consensus 226 ~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 226 ERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 34555543 34478999999999999998886 457999998 677776653
No 412
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=88.90 E-value=0.74 Score=33.02 Aligned_cols=67 Identities=12% Similarity=0.205 Sum_probs=47.1
Q ss_pred HHHHHhcChhhHHhhcCCCCCCCHHHHHHhCC--------CCCCCCcch-hccHHHHHHHHhhCCcccceeec--CC--c
Q 041256 30 MQAVVELDVFEIISKAGPGAKLSVAEIVAQIP--------LKDNNPEAA-AMTLDRVLRLLVSYNALHCSFVD--GQ--R 96 (244)
Q Consensus 30 L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~--------~~~~~~~~~-~~~l~rlLr~L~~~gll~~~~~~--~~--~ 96 (244)
+....++-|...|.+ +|.+.-+|++.++ ++ + .. +.+.|+-|...|+++..... ++ -
T Consensus 10 ~~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~is------~~~t-ly~~L~~Le~~GlI~~~~~~~~~~~r~ 78 (118)
T 2esh_A 10 RGWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGIG------HMGN-IYRVLADLEESGFLSTEWDTTVSPPRK 78 (118)
T ss_dssp HHHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTCC------CCCC-HHHHHHHHHHTTSEEEEEECSSSSCEE
T ss_pred ccchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCCC------Ccch-HHHHHHHHHHCCCeEEEeecCCCCCce
Confidence 334455667777776 5899999999883 44 4 45 99999999999999864321 11 2
Q ss_pred eeecCcccccc
Q 041256 97 LYSLAPVSAYF 107 (244)
Q Consensus 97 ~y~~t~~s~~l 107 (244)
.|++|+.++.+
T Consensus 79 ~Y~LT~~G~~~ 89 (118)
T 2esh_A 79 IYRITPQGKLY 89 (118)
T ss_dssp EEEECHHHHHH
T ss_pred EEEEChHHHHH
Confidence 47888877633
No 413
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=87.81 E-value=0.33 Score=42.58 Aligned_cols=33 Identities=24% Similarity=0.178 Sum_probs=27.9
Q ss_pred cceEEEecCCccHHHHHHHHH-----------------CCCCeEEEccch
Q 041256 194 VKKLVDVGGGLGITLNMIISK-----------------YPHIKGINYDLP 226 (244)
Q Consensus 194 ~~~vvDVGGG~G~~~~~l~~~-----------------~P~l~~~v~Dlp 226 (244)
.-+|+|+||++|..+..++.. .|+++++.-|||
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp 102 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLF 102 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCC
Confidence 688999999999988877666 578888888999
No 414
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=87.57 E-value=0.53 Score=31.33 Aligned_cols=34 Identities=6% Similarity=0.096 Sum_probs=30.9
Q ss_pred CCCCHHHHHHhCCC-CCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 49 AKLSVAEIVAQIPL-KDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 49 g~~t~~eLA~~~~~-~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
+.+++.++|+.+++ . -++ ++.++.+|.++|++++
T Consensus 29 ~~i~l~~aa~~L~v~~------kRR-iYDI~NVLe~igli~K 63 (76)
T 1cf7_A 29 GVLDLKLAADTLAVRQ------KRR-IYDITNVLEGIGLIEK 63 (76)
T ss_dssp TEEEHHHHHHHTTTCC------THH-HHHHHHHHHHHTSEEE
T ss_pred CcCcHHHHHHHhCCcc------cee-hhhHHHHHhHhcceee
Confidence 68999999999999 5 466 9999999999999995
No 415
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=87.54 E-value=0.38 Score=33.17 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=37.0
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
+.|+..|.+.+. .+++..|||++++++ ..- +.++|+.|...||+.+
T Consensus 23 ~~Vl~~I~~~g~-~gi~qkeLa~~~~l~------~~t-vt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 23 KLVYQIIEDAGN-KGIWSRDVRYKSNLP------LTE-INKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHHHCT-TCEEHHHHHHHTTCC------HHH-HHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCC-CCcCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEE
Confidence 446677776421 479999999999997 345 9999999999999984
No 416
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=87.53 E-value=0.55 Score=43.92 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=42.9
Q ss_pred chhhccCCchHHHHHHHHHHhcchhhHHHHHhhcCC---CCCcceEEEecCCccHHHHHHHHHC----CCCeEEEccchH
Q 041256 155 IYDYLGVDSRFNDVFNNGMLSHTSIVMEKVLESYKG---FEHVKKLVDVGGGLGITLNMIISKY----PHIKGINYDLPY 227 (244)
Q Consensus 155 ~~e~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~~---~~~~~~vvDVGGG~G~~~~~l~~~~----P~l~~~v~Dlp~ 227 (244)
.||.+++|+-+-..+.+|+.. .+.+..+. -.+.+.|+|||+|+|-++...+++- -++++..++-..
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 477778898877888888753 22222210 2345789999999999854444432 224566666543
Q ss_pred HhhhC
Q 041256 228 VIKDA 232 (244)
Q Consensus 228 vi~~a 232 (244)
....+
T Consensus 396 ~A~~a 400 (637)
T 4gqb_A 396 NAVVT 400 (637)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 417
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=87.42 E-value=0.93 Score=32.61 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=46.5
Q ss_pred HHHHHHhcChhhHHhhcCCCCCCCHHHHHHhC------CCCCCCCcchhccHHHHHHHHhhCCcccceeec---CC--ce
Q 041256 29 VMQAVVELDVFEIISKAGPGAKLSVAEIVAQI------PLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVD---GQ--RL 97 (244)
Q Consensus 29 ~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~------~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~---~~--~~ 97 (244)
.++-.+++=|...|.+ +|.+--+|++.+ +++ +.. +...|+-|...|+++..... ++ -.
T Consensus 7 l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~is------~gt-lY~~L~rLe~~GlI~~~~~~~~~g~~rk~ 75 (117)
T 4esf_A 7 MLKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTEVV------EGT-VYTILVRLEKKKLVNIEKKPSDMGPPRKF 75 (117)
T ss_dssp HHHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTTCC------HHH-HHHHHHHHHHTTCEEEEEEC-----CEEE
T ss_pred HHHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCCC------ccH-HHHHHHHHHHCCCEEEEeecCCCCCCceE
Confidence 3444455556667776 689999999987 565 456 99999999999999864321 11 24
Q ss_pred eecCccccc
Q 041256 98 YSLAPVSAY 106 (244)
Q Consensus 98 y~~t~~s~~ 106 (244)
|++|+.++.
T Consensus 76 Y~LT~~G~~ 84 (117)
T 4esf_A 76 YSLNEAGRQ 84 (117)
T ss_dssp EEECHHHHH
T ss_pred EEECHHHHH
Confidence 778777653
No 418
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=86.33 E-value=0.21 Score=35.76 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=35.7
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCC----CCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIP----LKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~----~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
..|...|... ++.|..+||+.++ ++ ... +.++|+-|...|++.+.
T Consensus 13 ~~vL~~l~~~---~~~t~~ela~~l~~~~~~s------~~t-v~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 13 WEVMNIIWMK---KYASANNIIEEIQMQKDWS------PKT-IRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHH---SSEEHHHHHHHHHHHCCCC------HHH-HHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHhC---CCcCHHHHHHHHhccCCCc------Hhh-HHHHHHHHHHCCCeEEE
Confidence 3455566554 6899999999998 54 345 99999999999999964
No 419
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=86.29 E-value=0.6 Score=36.62 Aligned_cols=41 Identities=24% Similarity=0.135 Sum_probs=33.7
Q ss_pred hHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 40 EIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 40 d~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
+.+.+.| .|.|..|||+.+|++ ... +.+.|+.|...|++..
T Consensus 16 ~~~~~~g--~~~s~~eia~~lgl~------~~t-v~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 16 EFIEKNG--YPPSVREIARRFRIT------PRG-ALLHLIALEKKGYIER 56 (196)
T ss_dssp HHHHHHS--SCCCHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEEC
T ss_pred HHHHHhC--CCCCHHHHHHHcCCC------cHH-HHHHHHHHHHCCCEEe
Confidence 3444543 489999999999997 345 9999999999999995
No 420
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=86.27 E-value=0.4 Score=45.45 Aligned_cols=40 Identities=10% Similarity=-0.114 Sum_probs=33.1
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 194 VKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 194 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+|||+|||+|.++..+++... -+++.+|+ |..++.+++
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~ 580 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAER 580 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHH
T ss_pred CCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHH
Confidence 47999999999999999988543 36899998 788887764
No 421
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=85.81 E-value=0.45 Score=33.10 Aligned_cols=34 Identities=35% Similarity=0.382 Sum_probs=29.4
Q ss_pred CCC-CHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 49 AKL-SVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 49 g~~-t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
..+ |..+||+.+|++ ..- +++-|+.|...|++..
T Consensus 33 ~~lps~~eLa~~~~vS------r~t-vr~al~~L~~~Gli~~ 67 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVA------AKT-VSRALAVLKSEGLVSS 67 (102)
T ss_dssp SBCCCHHHHHHHSSSC------TTH-HHHHTTTTTTSSCCEE
T ss_pred CCCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEE
Confidence 355 999999999997 344 9999999999999985
No 422
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=85.81 E-value=0.42 Score=39.30 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=44.9
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCccccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAY 106 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~ 106 (244)
+..|...|...+. +++|..|||+.++++ +.. +.++++-|...|++.+.+...+. ...+|+.+..
T Consensus 160 q~~vL~~L~~~~~-~~~t~~eLa~~l~i~------~~t-vt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~ 226 (250)
T 1p4x_A 160 EFTILAIITSQNK-NIVLLKDLIETIHHK------YPQ-TVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQD 226 (250)
T ss_dssp HHHHHHHHHTTTT-CCEEHHHHHHHSSSC------HHH-HHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHH
T ss_pred HHHHHHHHHhCCC-CCcCHHHHHHHHCCC------hhh-HHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHH
Confidence 3446677766531 259999999999997 456 99999999999999974322233 2455555543
No 423
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=85.63 E-value=0.32 Score=44.61 Aligned_cols=49 Identities=18% Similarity=0.034 Sum_probs=34.7
Q ss_pred HHhhcCCCCCcceEEEecCCccHHHHHHHHHCC------------------CCeEEEccc-hHHhhhCC
Q 041256 184 VLESYKGFEHVKKLVDVGGGLGITLNMIISKYP------------------HIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 184 ~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P------------------~l~~~v~Dl-p~vi~~a~ 233 (244)
+++... .....+|+|.+||+|.++..+.+... ..+...+|+ |..+..|+
T Consensus 161 mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~ 228 (541)
T 2ar0_A 161 IIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL 228 (541)
T ss_dssp HHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred HHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence 344444 34457999999999999998876532 236788888 77776664
No 424
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=85.62 E-value=0.97 Score=33.47 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=42.7
Q ss_pred HHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCc-chhccHHHHHHHHhhCCcccceeec-CCceeecC
Q 041256 33 VVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPE-AAAMTLDRVLRLLVSYNALHCSFVD-GQRLYSLA 101 (244)
Q Consensus 33 a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~-~~~~~l~rlLr~L~~~gll~~~~~~-~~~~y~~t 101 (244)
.-+.-|++.|.+.+ ++.|++||.+.+.-. .|. ...- ++|.|+.|+..|++.+..-. +..+|..+
T Consensus 14 ~qR~~Il~~L~~~~--~h~sa~eI~~~l~~~--~~~is~aT-VYR~L~~L~e~Glv~~~~~~~g~~~Y~~~ 79 (139)
T 3mwm_A 14 RQRAAVSAALQEVE--EFRSAQELHDMLKHK--GDAVGLTT-VYRTLQSLADAGEVDVLRTAEGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHTTCS--SCEEHHHHHHHHHHT--TCCCCHHH-HHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred HHHHHHHHHHHhCC--CCCCHHHHHHHHHHh--CCCCCHHH-HHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence 34566888888764 689999999988421 111 0233 99999999999999864211 12356653
No 425
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=85.33 E-value=0.77 Score=35.76 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=44.4
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCc-ccceeecCCceeecCccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNA-LHCSFVDGQRLYSLAPVS 104 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gl-l~~~~~~~~~~y~~t~~s 104 (244)
-...|.+.|.+.+ +++|..|||+.+|++ ..- ++|-++.|...|+ +.. . .+.|.+.+..
T Consensus 22 R~~~Il~~L~~~~--~~~s~~eLa~~l~vS------~~T-i~rdi~~L~~~G~~I~~---~-~~Gy~l~~~~ 80 (187)
T 1j5y_A 22 RLKSIVRILERSK--EPVSGAQLAEELSVS------RQV-IVQDIAYLRSLGYNIVA---T-PRGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHHCS--SCBCHHHHHHHHTSC------HHH-HHHHHHHHHHHTCCCEE---E-TTEEECCTTT
T ss_pred HHHHHHHHHHHcC--CCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCeEEE---E-CCEEEECCcc
Confidence 4556788887643 579999999999997 455 9999999999999 653 2 3568777654
No 426
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=84.92 E-value=0.73 Score=33.89 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=36.4
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCC----CCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIP----LKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~----~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
+..|...|.+.. +++|..||++.++ ++ ..- +.++|+-|...|++.+
T Consensus 11 e~~vL~~L~~~~--~~~t~~el~~~l~~~~~~~------~~T-vt~~l~rLe~kGlv~r 60 (138)
T 2g9w_A 11 ERAVMDHLWSRT--EPQTVRQVHEALSARRDLA------YTT-VMAVLQRLAKKNLVLQ 60 (138)
T ss_dssp HHHHHHHHHTCS--SCEEHHHHHHHHTTTCCCC------HHH-HHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhcC--CCCCHHHHHHHHhccCCCC------HHH-HHHHHHHHHHCCCEEE
Confidence 455666776521 5899999999997 44 345 9999999999999996
No 427
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=84.84 E-value=0.97 Score=33.95 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=39.7
Q ss_pred HHHhcChhhHHhhcCCCCCCCHHHHHHhC-----CCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 32 AVVELDVFEIISKAGPGAKLSVAEIVAQI-----PLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 32 ~a~~lgifd~L~~~~~~g~~t~~eLA~~~-----~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
+--+.-|++.|.+.+ ++.|++||.+.+ +++ ..- ++|.|+.|+..|++.+.
T Consensus 26 T~qR~~IL~~l~~~~--~~~sa~ei~~~l~~~~~~is------~aT-VYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 26 SKQREEVVSVLYRSG--THLSPEEITHSIRQKDKNTS------ISS-VYRILNFLEKENFISVL 80 (150)
T ss_dssp HHHHHHHHHHHHHCS--SCBCHHHHHHHHHHHSTTCC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCC------Hhh-HHHHHHHHHHCCcEEEE
Confidence 445566889998764 689999999998 453 334 99999999999999864
No 428
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=84.74 E-value=0.52 Score=37.94 Aligned_cols=54 Identities=7% Similarity=0.106 Sum_probs=41.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcccccccc
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYFVR 109 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l~~ 109 (244)
++.|..++|+.++++ ... +.|.++.|...|+|.+........+.+|+.++.+..
T Consensus 26 ~~~s~s~aA~~L~is------q~a-vSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 26 AYLTSSKLADMLGIS------QQS-ASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLY 79 (230)
T ss_dssp EECCHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHH
Confidence 468999999999997 456 999999999999999632111356888888875553
No 429
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=84.60 E-value=0.87 Score=39.80 Aligned_cols=50 Identities=10% Similarity=0.212 Sum_probs=40.9
Q ss_pred HHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 30 MQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 30 L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
++..-+..|++.|.+. +++|..|||+.+|++ ..- +.++++.|...|++.+
T Consensus 13 ~r~~n~~~il~~l~~~---~~~sr~~la~~~~ls------~~t-v~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQL---GPVSRIDLSRLAQLA------PAS-ITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHHHHHHSS---CSCCHHHHHHHTTCC------HHH-HHHHHHHHHHHTSEEE
T ss_pred HHHhHHHHHHHHHHHc---CCcCHHHHHHHHCCC------HHH-HHHHHHHHHHCCcEEe
Confidence 3333445578888875 799999999999997 445 9999999999999985
No 430
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=84.46 E-value=0.54 Score=41.35 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=35.9
Q ss_pred CcceEEEecCCccHHHHHHHHHCCC-CeEEEccc-hHHhhhCCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKYPH-IKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~ 234 (244)
+..+|+|+++|+|.+++.++++.++ -+++..|+ |..++.+++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~ 95 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKE 95 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHH
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 3478999999999999999998776 46788998 888888765
No 431
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=84.22 E-value=0.94 Score=31.86 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=33.0
Q ss_pred HHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhh
Q 041256 32 AVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVS 83 (244)
Q Consensus 32 ~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~ 83 (244)
.+.++||+..|.. |..|..|||+.+|++ ... +.|+=|.|-.
T Consensus 44 l~~R~~l~~~L~~----ge~TQREIA~~lGiS------~st-ISRi~r~L~~ 84 (101)
T 1jhg_A 44 LGTRVRIIEELLR----GEMSQRELKNELGAG------IAT-ITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHH----CCSCHHHHHHHHCCC------HHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----CCcCHHHHHHHHCCC------hhh-hhHHHHHHHH
Confidence 3457899999987 689999999999997 456 8888776643
No 432
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=84.07 E-value=0.94 Score=28.20 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=38.6
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
+-.|.+.+..+| |-+.+...|++.|++ .+. +..+||-|..-|++..
T Consensus 12 e~~lL~yIr~sG--GildI~~~a~kygV~------kde-V~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNG--GFLDIEHFSKVYGVE------KQE-VVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTT--SEEEHHHHHHHHCCC------HHH-HHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcC--CEEeHHHHHHHhCCC------HHH-HHHHHHHHHHCCCeec
Confidence 345778888876 789999999999997 456 8999999999999873
No 433
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=84.02 E-value=0.64 Score=44.71 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=34.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCC---CeEEEccc-hHHhhhC
Q 041256 191 FEHVKKLVDVGGGLGITLNMIISKYPH---IKGINYDL-PYVIKDA 232 (244)
Q Consensus 191 ~~~~~~vvDVGGG~G~~~~~l~~~~P~---l~~~v~Dl-p~vi~~a 232 (244)
+....+|+|.|||+|.++.+++++.+. .+...+|+ |..++.|
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LA 364 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELL 364 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHH
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHH
Confidence 345679999999999999999998873 56889998 6666665
No 434
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=84.01 E-value=0.85 Score=32.15 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=43.0
Q ss_pred HHhcChhhHHhhcCCCCCCCHHHHHHhC----CCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc----eeecCccc
Q 041256 33 VVELDVFEIISKAGPGAKLSVAEIVAQI----PLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR----LYSLAPVS 104 (244)
Q Consensus 33 a~~lgifd~L~~~~~~g~~t~~eLA~~~----~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~----~y~~t~~s 104 (244)
..++-|...|.+ +|.+--+|++.+ +++ +.. +.+.|+-|...|+++......++ .|++|+.+
T Consensus 9 ~l~~~IL~~L~~----~~~~gyel~~~l~~~~~i~------~~t-ly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G 77 (108)
T 3l7w_A 9 LIEYLILAIVSK----HDSYGYDISQTIKLIASIK------EST-LYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSG 77 (108)
T ss_dssp HHHHHHHHHHHH----SCEEHHHHHHHHTTTCCCC------HHH-HHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHH
T ss_pred HHHHHHHHHHHc----CCCcHHHHHHHHHHHhCCC------cCh-HHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHH
Confidence 345556667776 578877777774 675 456 99999999999999864321122 37777766
Q ss_pred cc
Q 041256 105 AY 106 (244)
Q Consensus 105 ~~ 106 (244)
+.
T Consensus 78 ~~ 79 (108)
T 3l7w_A 78 EK 79 (108)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 435
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=83.84 E-value=0.56 Score=33.60 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=36.9
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
+..|...|.+. +|+|..|||+.++.+ .+. ++.- +.++|+-|...|++.+.
T Consensus 12 q~~vL~~L~~~---~~~t~~el~~~l~~~-~~~-~~~T-vt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 12 EWDVMNIIWDK---KSVSANEIVVEIQKY-KEV-SDKT-IRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHS---SSEEHHHHHHHHHTT-SCC-CHHH-HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHhhc-CCC-Chhh-HHHHHHHHHHCCceEEE
Confidence 44566677765 689999999999741 000 0345 99999999999999963
No 436
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=83.60 E-value=1.2 Score=37.64 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=31.2
Q ss_pred HHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 041256 183 KVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL 225 (244)
Q Consensus 183 ~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 225 (244)
.+.+. ..+....++||+||+.|.++.-++++.+-..++.+|+
T Consensus 72 ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdl 113 (300)
T 3eld_A 72 WLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTL 113 (300)
T ss_dssp HHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred HHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEe
Confidence 44444 4356779999999999999999998766545555565
No 437
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=83.50 E-value=0.95 Score=31.50 Aligned_cols=49 Identities=24% Similarity=0.220 Sum_probs=36.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCce--eecCcccc
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRL--YSLAPVSA 105 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~--y~~t~~s~ 105 (244)
++.+..+||+.++++ -.. |.|.|..|...|++..... .+++ ..+|+.++
T Consensus 35 ~~~s~~eLa~~l~l~------~st-LsR~l~rLe~~GLV~r~~~-~D~R~~v~LT~~G~ 85 (96)
T 2obp_A 35 TPWSLPKIAKRAQLP------MSV-LRRVLTQLQAAGLADVSVE-ADGRGHASLTQEGA 85 (96)
T ss_dssp CCCBHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEEEC-TTSCEEEEECHHHH
T ss_pred CCcCHHHHHHHhCCc------hhh-HHHHHHHHHHCCCEEeecC-CCCceeEEECHHHH
Confidence 679999999999996 345 9999999999999996432 2333 44454443
No 438
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=83.48 E-value=0.61 Score=40.49 Aligned_cols=70 Identities=11% Similarity=0.185 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecC------Ccee
Q 041256 25 VLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDG------QRLY 98 (244)
Q Consensus 25 ~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~------~~~y 98 (244)
..+++++..-+..|++.|. . +++|..|||+.+|++ ..- +.++++.|...|++.+..... +-.|
T Consensus 12 ~~~~~~~~~~~~~il~~l~-~---~~~sr~~la~~~gls------~~t-v~~~v~~L~~~gli~~~~~~~~~~GR~~~~l 80 (380)
T 2hoe_A 12 HMPKSVRAENISRILKRIM-K---SPVSRVELAEELGLT------KTT-VGEIAKIFLEKGIVVEEKDSPKGVGRPTKSL 80 (380)
T ss_dssp ----------CCCSHHHHH-H---SCBCHHHHHHHHTCC------HHH-HHHHHHHHHHHTSEEEEECCC----CCCEEE
T ss_pred cCchhHHHHHHHHHHHHHH-c---CCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEeecCCCCCCCCCceEE
Confidence 4567778888888999999 6 699999999999997 445 999999999999998532100 1236
Q ss_pred ecCcccc
Q 041256 99 SLAPVSA 105 (244)
Q Consensus 99 ~~t~~s~ 105 (244)
+.++-..
T Consensus 81 ~~~~~~~ 87 (380)
T 2hoe_A 81 KISPNCA 87 (380)
T ss_dssp EECGGGC
T ss_pred EEccCCC
Confidence 7776654
No 439
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=83.19 E-value=2 Score=30.65 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=46.8
Q ss_pred HHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhC--------CCCCCCCcchhccHHHHHHHHhhCCcccceeec-CC---
Q 041256 28 AVMQAVVELDVFEIISKAGPGAKLSVAEIVAQI--------PLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVD-GQ--- 95 (244)
Q Consensus 28 ~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~--------~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~-~~--- 95 (244)
+.++-..++=|...|.+ +|.+--+|.+.+ +++ +.. +.+.|+-|...|+++..... ..
T Consensus 7 ~~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~i~------~gt-ly~~L~rLe~~GlI~~~~~~~~~~~~ 75 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEMELN------EAT-LYTIFKRLEKDGIISSYWGDESQGGR 75 (116)
T ss_dssp HHHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCCCC------HHH-HHHHHHHHHHTTSEEEEEEC----CC
T ss_pred HHHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCCCC------cch-HHHHHHHHHHCCCEEEEeeccCCCCC
Confidence 34444556666677776 689999998887 454 456 99999999999999864211 11
Q ss_pred -ceeecCccccc
Q 041256 96 -RLYSLAPVSAY 106 (244)
Q Consensus 96 -~~y~~t~~s~~ 106 (244)
-.|++|+.++.
T Consensus 76 rk~Y~LT~~G~~ 87 (116)
T 3f8b_A 76 RKYYRLTEIGHE 87 (116)
T ss_dssp EEEEEECHHHHH
T ss_pred ceEEEECHHHHH
Confidence 24778777653
No 440
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=83.16 E-value=1.4 Score=31.57 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=47.1
Q ss_pred HHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhC------CCCCCCCcchhccHHHHHHHHhhCCcccceeecC-C----c
Q 041256 28 AVMQAVVELDVFEIISKAGPGAKLSVAEIVAQI------PLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDG-Q----R 96 (244)
Q Consensus 28 ~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~------~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~-~----~ 96 (244)
+.++-..++=|...|.+ +|.+--+|++.+ +++ +.. +...|+-|...|+++...... . -
T Consensus 8 ~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~is------~gt-lY~~L~rLe~~GlI~~~~~~~~~g~~rk 76 (116)
T 3hhh_A 8 ELLKGILEGLVLAIIQR----KETYGYEITKILNDQGFTEIV------EGT-VYTILLRLEKNQWVIAEKKPSEKGPMRK 76 (116)
T ss_dssp HHHTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSSCC------HHH-HHHHHHHHHHTTSEEEEEEECC--CEEE
T ss_pred HHHhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCCCC------ccH-HHHHHHHHHHCCCEEEEeeecCCCCCce
Confidence 34444455556677776 689999999987 454 456 999999999999998643211 1 1
Q ss_pred eeecCccccc
Q 041256 97 LYSLAPVSAY 106 (244)
Q Consensus 97 ~y~~t~~s~~ 106 (244)
.|++|+.++.
T Consensus 77 ~Y~lT~~G~~ 86 (116)
T 3hhh_A 77 FYRLTSSGEA 86 (116)
T ss_dssp EEEECHHHHH
T ss_pred EEEECHHHHH
Confidence 4788877653
No 441
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=82.76 E-value=1.3 Score=36.33 Aligned_cols=44 Identities=14% Similarity=0.059 Sum_probs=34.6
Q ss_pred HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 041256 181 MEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL 225 (244)
Q Consensus 181 ~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 225 (244)
...+.+.+- +....+|||+||+.|.++.-.+....--++..+|+
T Consensus 67 L~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdv 110 (267)
T 3p8z_A 67 LQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTK 110 (267)
T ss_dssp HHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEec
Confidence 345666664 67678999999999999997777766557888887
No 442
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=82.73 E-value=0.76 Score=40.98 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=37.7
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
..|...|.+.+ ++++|..|||+.++++ ... +.|+++-|...|++++.
T Consensus 407 ~~vl~~l~~~~-~~~~~~~~l~~~~~~~------~~~-~t~~~~~le~~g~v~r~ 453 (487)
T 1hsj_A 407 IYILNHILRSE-SNEISSKEIAKCSEFK------PYY-LTKALQKLKDLKLLSKK 453 (487)
T ss_dssp HHHHHHHHTCS-CSEEEHHHHHHSSCCC------HHH-HHHHHHHHHTTTTSCCE
T ss_pred HHHHHHHHhCC-CCCcCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEeec
Confidence 34666676641 1589999999999997 456 99999999999999974
No 443
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=82.09 E-value=1.9 Score=37.96 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=33.7
Q ss_pred CCcceEEEecCCccHHHHHHH-HHCCC-CeEEEccc-hHHhhhCC
Q 041256 192 EHVKKLVDVGGGLGITLNMII-SKYPH-IKGINYDL-PYVIKDAP 233 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~-~~~P~-l~~~v~Dl-p~vi~~a~ 233 (244)
.+..+++|||++.|.++..++ +..|. .+++.++- |...+..+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~ 269 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQ 269 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 456899999999999999988 67776 78999985 66655543
No 444
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=82.07 E-value=0.48 Score=41.17 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=25.6
Q ss_pred CCcceEEEecCCccHHHHHHHHH----------------CCCCeEEEccch
Q 041256 192 EHVKKLVDVGGGLGITLNMIISK----------------YPHIKGINYDLP 226 (244)
Q Consensus 192 ~~~~~vvDVGGG~G~~~~~l~~~----------------~P~l~~~v~Dlp 226 (244)
++.-+|+|+||++|..+..++.. .|.++++.-|||
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp 100 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLP 100 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECT
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCC
Confidence 45688999999999754433322 577788888998
No 445
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=81.35 E-value=1.7 Score=31.85 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=36.6
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhC-----CCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQI-----PLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~-----~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
+.-|++.|.+.+ +++.|++||.+.+ +++ ..- ++|.|+.|+..|++.+.
T Consensus 20 R~~Il~~L~~~~-~~~~sa~ei~~~l~~~~~~is------~aT-VYR~L~~L~e~Glv~~~ 72 (136)
T 1mzb_A 20 RVKILQMLDSAE-QRHMSAEDVYKALMEAGEDVG------LAT-VYRVLTQFEAAGLVVRH 72 (136)
T ss_dssp HHHHHHHHHCC--CCSBCHHHHHHHHHHTTCCCC------HHH-HHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCCCC------HHH-HHHHHHHHHHCCcEEEE
Confidence 445788887642 1489999999998 443 334 99999999999999853
No 446
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=80.96 E-value=1.2 Score=34.30 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=44.2
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhC--------CCCCCCCcchhccHHHHHHHHhhCCcccceeecC-----CceeecC
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQI--------PLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDG-----QRLYSLA 101 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~--------~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~-----~~~y~~t 101 (244)
++-|...|.+ +|.+.-||++.+ +++ +.. +++.|+-|...|+++...... .-.|++|
T Consensus 4 ~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~s------~~~-ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT 72 (179)
T 1yg2_A 4 PHVILTVLST----RDATGYDITKEFSASIGYFWKAS------HQQ-VYRELNKMGEQGLVTCVLEPQEGKPDRKVYSIT 72 (179)
T ss_dssp HHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCCC------HHH-HHHHHHHHHHTTSEEECCC---------CEEEC
T ss_pred HHHHHHHHhc----CCCCHHHHHHHHHHHhCCccCCC------cCc-HHHHHHHHHHCCCeEEEeecCCCCCCceEEEeC
Confidence 4456677776 699999999998 354 456 999999999999998532111 1259999
Q ss_pred cccc
Q 041256 102 PVSA 105 (244)
Q Consensus 102 ~~s~ 105 (244)
+.++
T Consensus 73 ~~G~ 76 (179)
T 1yg2_A 73 QAGR 76 (179)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 9986
No 447
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=80.54 E-value=2.3 Score=30.98 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=32.3
Q ss_pred CCC-CHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCcee
Q 041256 49 AKL-SVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLY 98 (244)
Q Consensus 49 g~~-t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y 98 (244)
..+ |..+||+.+|++ ..- +++-|+.|...|++.. ..+.|.|
T Consensus 26 ~~LPse~~La~~~gvS------r~t-Vr~Al~~L~~~Gli~~--~~g~G~~ 67 (129)
T 2ek5_A 26 QRVPSTNELAAFHRIN------PAT-ARNGLTLLVEAGILYK--KRGIGMF 67 (129)
T ss_dssp SCBCCHHHHHHHTTCC------HHH-HHHHHHHHHTTTSEEE--ETTTEEE
T ss_pred CcCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCcEEE--ecCCEEE
Confidence 356 899999999997 344 9999999999999985 3344544
No 448
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=80.33 E-value=0.83 Score=36.78 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=38.3
Q ss_pred CHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccccccc
Q 041256 52 SVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYFV 108 (244)
Q Consensus 52 t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 108 (244)
+..+||+.++++ ... +.++|+-|...|++++ ..+..+.+|+.++.+.
T Consensus 26 ~~~~La~~l~vs------~~t-vs~~l~~Le~~GlV~r---~~~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQS------GPT-VSQTVSRMERDGLLRV---AGDRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE---CTTSCEEECHHHHHHH
T ss_pred cHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEE---eCCccEEECHHHHHHH
Confidence 449999999997 456 9999999999999996 2246788999887554
No 449
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=80.00 E-value=1.5 Score=36.97 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=32.8
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL 225 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 225 (244)
..+.+.+. +.....|||+||+.|.++.-.+....--++..+|+
T Consensus 84 ~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdv 126 (321)
T 3lkz_A 84 RWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTK 126 (321)
T ss_dssp HHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEc
Confidence 45555555 66667999999999999997766665557888887
No 450
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=79.90 E-value=2.5 Score=35.90 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=42.6
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPV 103 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~ 103 (244)
..|.+.|.+. ++.|.++||+.++++ +.. ++|-|+.|...|++.+. ..+ ..|++.+.
T Consensus 8 ~~Il~~L~~~---~~~s~~eLa~~l~vS------~~t-i~r~l~~L~~~G~~i~~-~~g-~GY~l~~~ 63 (321)
T 1bia_A 8 LKLIALLANG---EFHSGEQLGETLGMS------RAA-INKHIQTLRDWGVDVFT-VPG-KGYSLPEP 63 (321)
T ss_dssp HHHHHHHTTS---SCBCHHHHHHHHTSC------HHH-HHHHHHHHHHTTCCCEE-ETT-TEEECSSC
T ss_pred HHHHHHHHcC---CCcCHHHHHHHHCCC------HHH-HHHHHHHHHhCCCcEEE-ecC-CCcEEeec
Confidence 3467777653 689999999999997 556 99999999999998743 233 45877653
No 451
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=79.75 E-value=0.84 Score=32.84 Aligned_cols=69 Identities=10% Similarity=0.178 Sum_probs=48.9
Q ss_pred HHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhCC------CCCCCCcchhccHHHHHHHHhhCCcccceeec-CC----c
Q 041256 28 AVMQAVVELDVFEIISKAGPGAKLSVAEIVAQIP------LKDNNPEAAAMTLDRVLRLLVSYNALHCSFVD-GQ----R 96 (244)
Q Consensus 28 ~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~------~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~-~~----~ 96 (244)
+.++-..++-|...|.+ +|.+.-+|++.++ ++ +.. +.+.|+.|...|+++..... +. -
T Consensus 9 ~l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i~------~gt-ly~~L~~Le~~GlI~~~~~~~~~~~~rk 77 (117)
T 3elk_A 9 RILHGLITLYILKELVK----RPMHGYELQKSMFETTGQALP------QGS-IYILLKTMKERGFVISESSVNEKGQQLT 77 (117)
T ss_dssp HHHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCCC------TTH-HHHHHHHHHHHTSEEEEEEEC-CCCEEE
T ss_pred HHHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCCC------cch-HHHHHHHHHHCCCEEEEeeecCCCCCce
Confidence 34455556667777876 6899999998876 54 345 99999999999999864321 11 2
Q ss_pred eeecCcccccc
Q 041256 97 LYSLAPVSAYF 107 (244)
Q Consensus 97 ~y~~t~~s~~l 107 (244)
.|++|+.++..
T Consensus 78 ~Y~lT~~G~~~ 88 (117)
T 3elk_A 78 VYHITDAGKKF 88 (117)
T ss_dssp EEEECHHHHHH
T ss_pred EEEECHHHHHH
Confidence 58888887633
No 452
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=79.61 E-value=1 Score=41.31 Aligned_cols=39 Identities=18% Similarity=0.014 Sum_probs=30.6
Q ss_pred ceEEEecCCccHHHHHHHHHCC---------------CCeEEEccc-hHHhhhCC
Q 041256 195 KKLVDVGGGLGITLNMIISKYP---------------HIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 195 ~~vvDVGGG~G~~~~~l~~~~P---------------~l~~~v~Dl-p~vi~~a~ 233 (244)
.+|+|.+||+|.++.++.+..+ ..+...+|+ |..+..|+
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~ 300 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAA 300 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHH
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHH
Confidence 4999999999999998865433 467888998 77766654
No 453
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=79.56 E-value=1.6 Score=30.91 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=32.6
Q ss_pred CCC-CHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceee
Q 041256 49 AKL-SVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYS 99 (244)
Q Consensus 49 g~~-t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~ 99 (244)
..+ |..+||+.+|++ ..- +++.|+.|...|+++. ..+.|.|-
T Consensus 31 ~~lPs~~~La~~~~vS------r~t-vr~al~~L~~~Gli~~--~~~~G~~V 73 (113)
T 3tqn_A 31 EMIPSIRKISTEYQIN------PLT-VSKAYQSLLDDNVIEK--RRGLGMLV 73 (113)
T ss_dssp CEECCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE--ETTTEEEE
T ss_pred CcCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEE--ecCCeEEE
Confidence 345 899999999997 345 9999999999999985 34445443
No 454
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=79.32 E-value=0.65 Score=36.13 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=47.4
Q ss_pred HHHHHhcChhhHHhhcCCCCCCCHHHHHHhCC-CCCCCCcchhccHHHHHHHHhhCCcccceeec--C---CceeecCcc
Q 041256 30 MQAVVELDVFEIISKAGPGAKLSVAEIVAQIP-LKDNNPEAAAMTLDRVLRLLVSYNALHCSFVD--G---QRLYSLAPV 103 (244)
Q Consensus 30 L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~-~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~--~---~~~y~~t~~ 103 (244)
|.-=.++.|+..|.+ ++.|+.+||+.++ ++ ... +.+-|+.|...|+++...+. . ...|++++.
T Consensus 20 La~P~Rl~il~~L~~----~~~~~~~l~~~l~~~~------~~~-~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~ 88 (182)
T 4g6q_A 20 LHHPLRWRITQLLIG----RSLTTRELAELLPDVA------TTT-LYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQ 88 (182)
T ss_dssp TTSHHHHHHHHHTTT----SCEEHHHHHHHCTTBC------HHH-HHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTT
T ss_pred hCCHHHHHHHHHHHh----CCCCHHHHHHHhcCCC------HHH-HHHHHHHHHHCCCeEEEEeecccCcceeEEEeccc
Confidence 333367778888876 6999999999996 75 345 88999999999999743221 1 134777766
Q ss_pred cccc
Q 041256 104 SAYF 107 (244)
Q Consensus 104 s~~l 107 (244)
+..+
T Consensus 89 ~~~~ 92 (182)
T 4g6q_A 89 AGDA 92 (182)
T ss_dssp TTTS
T ss_pred cccC
Confidence 5443
No 455
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=79.28 E-value=1.3 Score=32.87 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=31.2
Q ss_pred hhhHHhhcCC--CCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 38 VFEIISKAGP--GAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 38 ifd~L~~~~~--~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
+...|...+. ++++|..+||+.++++ +.. +.++++-|...|++..
T Consensus 38 vL~~l~~~~~~~~~~~t~~eLa~~l~~~------~~t-vsr~v~~Le~~glVr~ 84 (148)
T 4fx0_A 38 TLAVISLSEGSAGIDLTMSELAARIGVE------RTT-LTRNLEVMRRDGLVRV 84 (148)
T ss_dssp HHHHHHC---------CHHHHHHHHTCC------HHH-HHHHHHHHHHTTSBC-
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHCCC------hhh-HHHHHHHHHHCCCEEe
Confidence 4455554321 2469999999999997 456 9999999999999963
No 456
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=79.19 E-value=3 Score=33.43 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=31.7
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
|+.|+.+||+.+|++ ..+ ....|+.+...|++..+
T Consensus 167 g~vt~~~la~~l~ws------~~~-a~e~L~~~e~~G~l~~D 201 (218)
T 3cuq_B 167 GSLTSEEFAKLVGMS------VLL-AKERLLLAEKMGHLCRD 201 (218)
T ss_dssp SCBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHhCCC------HHH-HHHHHHHHHHcCCEEEE
Confidence 689999999999997 566 88999999999999976
No 457
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=78.77 E-value=0.72 Score=38.18 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=25.9
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHH
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISK 214 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~ 214 (244)
.++-+.+ .+....+|||+||+.|..+.-.+++
T Consensus 63 ~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~ 94 (269)
T 2px2_A 63 RWLVERR-FVQPIGKVVDLGCGRGGWSYYAATM 94 (269)
T ss_dssp HHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTS
T ss_pred HHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhh
Confidence 4555555 4777899999999999999988885
No 458
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=78.57 E-value=0.96 Score=32.62 Aligned_cols=44 Identities=9% Similarity=0.027 Sum_probs=35.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCc
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~ 102 (244)
.|.++.+||+.++++ +.. +..+|+.|+..|.+.+ ..++.|-++.
T Consensus 19 ~p~~~~~la~~~~~~------~~~-~~~~l~~l~~~G~l~~---i~~~~~~~~~ 62 (121)
T 2pjp_A 19 EPWWVRDLAKETGTD------EQA-MRLTLRQAAQQGIITA---IVKDRYYRND 62 (121)
T ss_dssp SCEEHHHHHHHTTCC------HHH-HHHHHHHHHHTTSEEE---EETTEEEEHH
T ss_pred CCCCHHHHHHHhCCC------HHH-HHHHHHHHHHCCCEEE---ecCCceECHH
Confidence 377999999999997 556 8999999999998885 3356666544
No 459
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=78.19 E-value=2 Score=36.02 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=26.2
Q ss_pred CCCcceEEEecC------CccHHHHHHHHHCC-CCeEEEccchH
Q 041256 191 FEHVKKLVDVGG------GLGITLNMIISKYP-HIKGINYDLPY 227 (244)
Q Consensus 191 ~~~~~~vvDVGG------G~G~~~~~l~~~~P-~l~~~v~Dlp~ 227 (244)
+....+|+|||| |.|. ..+++..| +.+++.+|+-+
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~ 102 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLND 102 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCC
Confidence 556679999999 4477 44566777 68899999843
No 460
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=77.60 E-value=2 Score=31.18 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=33.0
Q ss_pred CCC-CHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceee
Q 041256 49 AKL-SVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYS 99 (244)
Q Consensus 49 g~~-t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~ 99 (244)
..+ |..+||+.+|++ ..- +++-|+.|...|++.. ..+.|.|-
T Consensus 33 ~~lPse~~La~~~~vS------r~t-vr~Al~~L~~~Gli~~--~~g~G~~V 75 (126)
T 3by6_A 33 DQLPSVRETALQEKIN------PNT-VAKAYKELEAQKVIRT--IPGKGTFI 75 (126)
T ss_dssp CEECCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE--ETTTEEEE
T ss_pred CcCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEE--ecCCeEEE
Confidence 456 999999999997 344 9999999999999985 34445443
No 461
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.42 E-value=1.4 Score=30.63 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=39.7
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
-|.-|+..+.+.| +.+++..+|..+++++ ... +.++|+.|...||+..
T Consensus 38 ~E~lVy~~I~~aG-n~GIw~kdL~~~tnL~------~~~-vtkiLK~LE~k~lIK~ 85 (95)
T 2yu3_A 38 QEKLVYQIIEDAG-NKGIWSRDVRYKSNLP------LTE-INKILKNLESKKLIKA 85 (95)
T ss_dssp HHHHHHHHHHHHT-TSCEEHHHHHHHHTCC------HHH-HHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHhCCC------HHH-HHHHHHHHHhCCCEEE
Confidence 3455778888765 3579999999999997 456 9999999999999985
No 462
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=77.31 E-value=1.2 Score=33.40 Aligned_cols=65 Identities=15% Similarity=0.258 Sum_probs=45.0
Q ss_pred HHHhcChhhHHhhcCCCCCCCHHHHHHhC--------CCCCCCCcchhccHHHHHHHHhhCCcccceeec---CC--cee
Q 041256 32 AVVELDVFEIISKAGPGAKLSVAEIVAQI--------PLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVD---GQ--RLY 98 (244)
Q Consensus 32 ~a~~lgifd~L~~~~~~g~~t~~eLA~~~--------~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~---~~--~~y 98 (244)
--.++-|...|.+ +|.+.-||++.+ +++ +.. +.+.|+-|...|+++..... ++ -.|
T Consensus 40 g~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~is------~gt-Ly~~L~rLE~~GlI~~~~~~~~~~~~rk~Y 108 (145)
T 1xma_A 40 GYVDTIILSLLIE----GDSYGYEISKNIRIKTDELYVIK------ETT-LYSAFARLEKNGYIKSYYGEETQGKRRTYY 108 (145)
T ss_dssp GTHHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCCCC------HHH-HHHHHHHHHHTTSEEEEEEEEC--CEEEEE
T ss_pred CcHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccCcC------hhH-HHHHHHHHHHCCCEEEEEeccCCCCCeEEE
Confidence 3345556667766 589989988887 464 456 99999999999999864321 11 247
Q ss_pred ecCcccccc
Q 041256 99 SLAPVSAYF 107 (244)
Q Consensus 99 ~~t~~s~~l 107 (244)
++|+.++.+
T Consensus 109 ~LT~~G~~~ 117 (145)
T 1xma_A 109 RITPEGIKY 117 (145)
T ss_dssp EECHHHHHH
T ss_pred EECHHHHHH
Confidence 888776533
No 463
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=76.52 E-value=2.6 Score=31.74 Aligned_cols=44 Identities=9% Similarity=0.140 Sum_probs=37.0
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
-.|.+.|.+ |+.|..+||+++|++ =.. .+-.|..|.-.|++.+.
T Consensus 14 ~~ILE~Lk~----G~~~t~~Iak~LGlS------hg~-aq~~Ly~LeREG~V~~V 57 (165)
T 2vxz_A 14 RDILALLAD----GCKTTSLIQQRLGLS------HGR-AKALIYVLEKEGRVTRV 57 (165)
T ss_dssp HHHHHHHTT----CCEEHHHHHHHHTCC------HHH-HHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHh----CCccHHHHHHHhCCc------HHH-HHHHHHHHHhcCceEEE
Confidence 346778873 799999999999997 345 88999999999999864
No 464
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=76.18 E-value=4.2 Score=35.56 Aligned_cols=64 Identities=9% Similarity=0.159 Sum_probs=41.2
Q ss_pred CchHHHHHHHHHHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHH---C----CCCeEEEccchHHhh
Q 041256 162 DSRFNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISK---Y----PHIKGINYDLPYVIK 230 (244)
Q Consensus 162 ~~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~---~----P~l~~~v~Dlp~vi~ 230 (244)
.|+....|.+.++.+-. ..|. ... .+..-.||++|+|.|.++..+++. + ..++.+++|......
T Consensus 54 apeis~~FGe~la~~~~---~~w~-~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr 124 (387)
T 1zkd_A 54 SPEISQMFGELLGLWSA---SVWK-AAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLR 124 (387)
T ss_dssp HHHHCHHHHHHHHHHHH---HHHH-HTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHH
T ss_pred CCchHHHHHHHHHHHHH---HHHH-HcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHH
Confidence 36677777777654321 1121 222 344568999999999999988865 3 345788888755444
No 465
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=75.96 E-value=2 Score=30.03 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=29.5
Q ss_pred CCC-CHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 49 AKL-SVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 49 g~~-t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
+.+ |..+||+.+|++ ..- +++-|+.|...|++..
T Consensus 41 ~~lps~~eLa~~lgVS------r~t-Vr~al~~L~~~GlI~~ 75 (102)
T 2b0l_A 41 EGLLVASKIADRVGIT------RSV-IVNALRKLESAGVIES 75 (102)
T ss_dssp EEEECHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE
T ss_pred CcCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEE
Confidence 345 999999999997 345 9999999999999985
No 466
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=75.69 E-value=1.9 Score=37.69 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=41.3
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecC
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t 101 (244)
..|++.|.. +|.++++|++++|++ ... +...|-.|.-.|++.. ...++|+++
T Consensus 331 ~~vl~~l~~----~~~~~D~l~~~~gl~------~~~-v~~~L~~LEl~G~v~~---~~Gg~~~~~ 382 (382)
T 3maj_A 331 TRILALLGP----SPVGIDDLIRLSGIS------PAV-VRTILLELELAGRLER---HGGSLVSLS 382 (382)
T ss_dssp HHHHHHCCS----SCEEHHHHHHHHCCC------HHH-HHHHHHHHHHTTCCEE---CTTSEEEC-
T ss_pred HHHHHhhCC----CCCCHHHHHHHHCcC------HHH-HHHHHHHHHhCCcEEe---CCCceEecC
Confidence 347888865 699999999999997 556 8888999999999995 345788763
No 467
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=75.67 E-value=3.4 Score=35.70 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=25.4
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 041256 194 VKKLVDVGGGLGITLNMIISKYPHIKGINYDL 225 (244)
Q Consensus 194 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 225 (244)
...||+||.|.|.+...|+++...-+.++++.
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~ 90 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEK 90 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEec
Confidence 47899999999999999998754345666654
No 468
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=75.45 E-value=2.4 Score=30.93 Aligned_cols=42 Identities=17% Similarity=0.323 Sum_probs=33.3
Q ss_pred CCC-CHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceee
Q 041256 49 AKL-SVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYS 99 (244)
Q Consensus 49 g~~-t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~ 99 (244)
..+ |..+||+.+|++ ..- +++-|+.|...|++.. ..+.|.|-
T Consensus 36 ~~LPser~La~~~gVS------r~t-VReAl~~L~~eGlv~~--~~g~G~~V 78 (134)
T 4ham_A 36 EKILSIREFASRIGVN------PNT-VSKAYQELERQEVIIT--VKGKGTFI 78 (134)
T ss_dssp CEECCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE--ETTTEEEE
T ss_pred CCCccHHHHHHHHCCC------HHH-HHHHHHHHHHCCcEEE--EcCcEEEE
Confidence 345 888999999997 334 9999999999999985 34556654
No 469
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=75.36 E-value=2.6 Score=30.44 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=33.4
Q ss_pred CCC-CHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeec
Q 041256 49 AKL-SVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (244)
Q Consensus 49 g~~-t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~ 100 (244)
..+ |..+||+.+|++ ..- +++-|+.|...|++.. ..+.|.|-.
T Consensus 35 ~~Lps~~~La~~~~vS------r~t-vr~Al~~L~~~G~i~~--~~g~G~~V~ 78 (125)
T 3neu_A 35 DKLPSVREMGVKLAVN------PNT-VSRAYQELERAGYIYA--KRGMGSFVT 78 (125)
T ss_dssp CBCCCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE--ETTTEEEEC
T ss_pred CCCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCeEEE--ecCCEEEEe
Confidence 345 699999999997 344 9999999999999985 344455543
No 470
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=75.24 E-value=2.4 Score=37.37 Aligned_cols=50 Identities=16% Similarity=0.328 Sum_probs=42.1
Q ss_pred HHHHHhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 30 MQAVVELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 30 L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
++..-+..|++.|... +++|..|||+.+|++ ..- +.++++.|...|++.+
T Consensus 36 ~r~~n~~~il~~l~~~---~~~sr~ela~~~gls------~~t-v~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 36 IKQINAGRVYKLIDQK---GPISRIDLSKESELA------PAS-ITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHHHHH---CSBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHc---CCcCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEe
Confidence 4555556688999886 699999999999997 445 9999999999999985
No 471
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=75.05 E-value=7.9 Score=24.08 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=35.9
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcc
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPV 103 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~ 103 (244)
.++|+.|+|...+++ -+. .+.-|..|.+.|-+.+ . ..+|++-|-
T Consensus 17 QGMTaGEVAA~f~w~------Le~-ar~aLeqLf~~G~LRK---R-sSRYrlkph 60 (68)
T 3i71_A 17 QGMTAGEVAAHFGWP------LEK-ARNALEQLFSAGTLRK---R-SSRYRLKPH 60 (68)
T ss_dssp TCBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE---E-CCEEEECC-
T ss_pred ccccHHHHHHHhCCc------HHH-HHHHHHHHHhcchhhh---h-ccccccCcc
Confidence 689999999999996 455 7889999999999984 3 478887663
No 472
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=74.77 E-value=1.7 Score=30.98 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=42.5
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCC------CCCCCCcchhccHHHHHHHHhhCCcccceeecC-Cc----eeecCcc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIP------LKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDG-QR----LYSLAPV 103 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~------~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~-~~----~y~~t~~ 103 (244)
++-|...|.+ +|.+--+|++.+. ++ +.. +.+.|+-|...|+++...... .+ .|++|+.
T Consensus 11 ~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~is------~gt-lY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~ 79 (115)
T 4esb_A 11 EGCILYIISQ----EEVYGYELSTKLNKHGFTFVS------EGS-IYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDK 79 (115)
T ss_dssp HHHHHHHHHH----SCEEHHHHHHHHHHTTCTTCC------HHH-HHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHH
T ss_pred HHHHHHHHHc----CCCCHHHHHHHHHHcCCCCCC------cCh-HHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHH
Confidence 3445566766 6899999998874 54 456 999999999999998543211 11 3777776
Q ss_pred ccc
Q 041256 104 SAY 106 (244)
Q Consensus 104 s~~ 106 (244)
++.
T Consensus 80 G~~ 82 (115)
T 4esb_A 80 GLE 82 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 473
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=74.74 E-value=2.1 Score=34.30 Aligned_cols=49 Identities=8% Similarity=0.122 Sum_probs=39.6
Q ss_pred CCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccccccc
Q 041256 50 KLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYFV 108 (244)
Q Consensus 50 ~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 108 (244)
+.+..+||+.++++ +.. +.++++-|...|++.+ .....+.+|+.++.+.
T Consensus 24 ~~~~~~la~~l~vs------~~t-vs~~l~~Le~~GlV~r---~~~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 24 TPLRARIAERLEQS------GPT-VSQTVARMERDGLVVV---ASDRSLQMTPTGRTLA 72 (226)
T ss_dssp CCBHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE---CTTSBEEECHHHHHHH
T ss_pred CccHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEE---eCCCCeEECHHHHHHH
Confidence 44569999999997 456 9999999999999996 2346689999987554
No 474
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=73.59 E-value=4.9 Score=32.73 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=36.9
Q ss_pred HHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc-hHHhhhCCC
Q 041256 182 EKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL-PYVIKDAPS 234 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~ 234 (244)
..+++.+. .....|+|..||+|..+.+..+. +-+++.+|+ |..++.+++
T Consensus 203 ~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~ 252 (260)
T 1g60_A 203 ERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANF 252 (260)
T ss_dssp HHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 44555543 34579999999999999998887 468999998 667666643
No 475
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=73.42 E-value=2.9 Score=35.23 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=30.2
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCccc
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALH 88 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~ 88 (244)
+++|..|||+++|++ ..- ++|.|..|...|++.
T Consensus 20 ~~~~~~ela~~l~vS------~~t-IrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 20 QDMTQAQIARELGIY------RTT-ISRLLKRGREQGIVT 52 (315)
T ss_dssp SCCCHHHHHHHTTCC------HHH-HHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCcEE
Confidence 589999999999997 445 999999999999997
No 476
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=72.90 E-value=3.4 Score=33.27 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=33.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCcee
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLY 98 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y 98 (244)
..++..+||+.+|++ ..- +++-|+.|...|+++. ..+.|.|
T Consensus 48 ~~L~e~~La~~lgVS------r~~-VReAL~~L~~~Glv~~--~~~~G~~ 88 (237)
T 3c7j_A 48 TALRQQELATLFGVS------RMP-VREALRQLEAQSLLRV--ETHKGAV 88 (237)
T ss_dssp CBCCHHHHHHHHTSC------HHH-HHHHHHHHHHTTSEEE--ETTTEEE
T ss_pred CeeCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEE--eCCCceE
Confidence 678999999999997 345 9999999999999996 3344544
No 477
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=72.05 E-value=1.3 Score=40.63 Aligned_cols=41 Identities=17% Similarity=-0.025 Sum_probs=33.3
Q ss_pred CcceEEEecCCccHHHHHHHHHC---CCCeEEEccc-hHHhhhCC
Q 041256 193 HVKKLVDVGGGLGITLNMIISKY---PHIKGINYDL-PYVIKDAP 233 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~~---P~l~~~v~Dl-p~vi~~a~ 233 (244)
...+|+|.+||+|.++.++.+.. +..+...+|+ |.++..|+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~ 265 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLAR 265 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHH
Confidence 45799999999999999999885 4577899998 66666654
No 478
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=70.06 E-value=17 Score=27.64 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCCCCeEEEccc
Q 041256 165 FNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYPHIKGINYDL 225 (244)
Q Consensus 165 ~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 225 (244)
+.+.|-+-|.+..... ...+....+ -..-|+|+|=|+|..=-.+.+.+|+-+..|||+
T Consensus 15 RLDsfirRltaQR~~L-~~a~~~v~~--~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR 72 (174)
T 3iht_A 15 RLDLFIDRMVSQRACL-EHAIAQTAG--LSGPVYELGLGNGRTYHHLRQHVQGREIYVFER 72 (174)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHTTT--CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcC--CCCceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence 4567777777654433 233344332 235799999999999999999999999999997
No 479
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=69.81 E-value=3.3 Score=38.24 Aligned_cols=57 Identities=5% Similarity=0.021 Sum_probs=46.5
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhh-----CCcccceeecCCceeecCcccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVS-----YNALHCSFVDGQRLYSLAPVSA 105 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~-----~gll~~~~~~~~~~y~~t~~s~ 105 (244)
++-|.+.|.+. +.+|..+|++.++++ +.. +.+.|+.|.. .|+++. .+ +.|.+++...
T Consensus 432 ~~~iL~~l~~~---~~it~~~la~~l~~s------~~~-~~~~L~~L~~~~~~~~glie~---~g-~~y~L~~~~~ 493 (583)
T 3lmm_A 432 IAIVLYLLFQR---PFITIDVVARGLQSG------KEA-ARNALEAARQTTVAGAPLIIA---HD-GVWLLGNACR 493 (583)
T ss_dssp HHHHHHHHHHS---SSBCHHHHHHHHTSC------HHH-HHHHHHHHHTCEETTEESEEE---ET-TEEEECHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHhCcC------HHH-HHHHHHHHHhhhccccceEEE---eC-CEEEECHHHH
Confidence 34577778876 589999999999997 556 9999999999 789994 44 7899988654
No 480
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=69.20 E-value=4.3 Score=34.50 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=44.1
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcccccc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYF 107 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l 107 (244)
..|.+.|.+.+ +.+.|.++||+.+|++ ... +.+-++.|...|+..+. .. ...|++.+....|
T Consensus 6 ~~iL~~L~~~~-g~~~Sg~eLa~~lgvS------r~a-V~k~i~~L~~~G~~i~~-~~-~~GY~L~~~~~~l 67 (323)
T 3rkx_A 6 QDVLQLLYKNK-PNYISGQSIAESLNIS------RTA-VKKVIDQLKLEGCKIDS-VN-HKGHLLQQLPDIW 67 (323)
T ss_dssp HHHHHHHHHHT-TSCBCHHHHHHHHTSC------HHH-HHHHHHHHHHTTCEEEE-ET-TTEEEEEECCSSC
T ss_pred HHHHHHHHhCC-CCccCHHHHHHHHCCC------HHH-HHHHHHHHHhcCCeEEE-eC-CCeEEEecCcccC
Confidence 34677775421 1489999999999997 456 99999999999996642 23 3568887643333
No 481
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=69.13 E-value=6 Score=31.96 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=40.2
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecC
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t 101 (244)
.-|.-.|.. ++.|.++||+.+|++ +.- +...|.-|...|++.. ..+++....
T Consensus 168 ~~l~~~l~~----~~~t~~~la~~~~l~------~~~-V~~~l~~L~~~~~v~~---~~~~~~~~~ 219 (232)
T 2qlz_A 168 AILHYLLLN----GRATVEELSDRLNLK------ERE-VREKISEMARFVPVKI---INDNTVVLD 219 (232)
T ss_dssp HHHHHHHHS----SEEEHHHHHHHHTCC------HHH-HHHHHHHHTTTSCEEE---ETTTEEEEC
T ss_pred HHHHHHHhc----CCCCHHHHHHHhCcC------HHH-HHHHHHHHHhcCCeEE---ecCCeEEec
Confidence 335555655 799999999999997 455 9999999999999974 345765554
No 482
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=69.11 E-value=0.99 Score=41.80 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=0.0
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHC 89 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 89 (244)
--|.+.|.+. |++|.+||++.++++ ... ++++|+-|+..|++..
T Consensus 519 ~~I~~~l~~~---g~it~~di~~l~~ls------~~q-a~~~L~~Lv~~G~l~~ 562 (583)
T 3lmm_A 519 NAAMLWLSEV---GDLATSDLMAMCGVS------RGT-AKACVDGLVDEERVVA 562 (583)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHCCC------HHH-HHHHHHHHHHCCcEEE
Confidence 3477888775 699999999999997 345 8999999999999985
No 483
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=68.44 E-value=3.6 Score=32.54 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=39.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCcccccc
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYF 107 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l 107 (244)
+|.+..+||+.++++ +.- +...++.|...|+++.+ . +...+|+.++.+
T Consensus 29 ~~V~~~~LA~~LgvS------~~S-V~~~lkkL~e~GLV~~~---~-~Gv~LTe~G~~~ 76 (200)
T 2p8t_A 29 EPLGRKQISERLELG------EGS-VRTLLRKLSHLDIIRSK---Q-RGHFLTLKGKEI 76 (200)
T ss_dssp SCBCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEEC------CEEECHHHHHH
T ss_pred CCccHHHHHHHhCCC------HHH-HHHHHHHHHHCCCEEEe---C-CCeEECHHHHHH
Confidence 489999999999998 556 99999999999999962 2 567999988643
No 484
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=68.09 E-value=3.6 Score=33.75 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=26.7
Q ss_pred CcceEEEecCCccHHHHHHHHH-------CCC-----CeEEEccc
Q 041256 193 HVKKLVDVGGGLGITLNMIISK-------YPH-----IKGINYDL 225 (244)
Q Consensus 193 ~~~~vvDVGGG~G~~~~~l~~~-------~P~-----l~~~v~Dl 225 (244)
+..+|++||.|.|..+..+++. +|+ ++.+.++.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~ 104 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 104 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEEC
Confidence 4589999999999988887664 784 57788875
No 485
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=68.06 E-value=1.1 Score=38.54 Aligned_cols=60 Identities=8% Similarity=0.065 Sum_probs=0.0
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccccccc
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYFV 108 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l~ 108 (244)
+..|...|... +++|..|||+.++++ +.- ++|.|+.|...|++.. +. ....+|+.++.+.
T Consensus 22 ~~~iL~~l~~~---~~~t~~eLa~~l~vs------~~T-v~r~l~~Le~~Glv~~--~~--~gi~LT~~G~~~~ 81 (345)
T 2o0m_A 22 RFQILRNIYWM---QPIGRRSLSETMGIT------ERV-LRTETDVLKQLNLIEP--SK--SGMTLTERGLEVY 81 (345)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEE--Ee--cceEEcHHHHHHH
Confidence 44567777665 689999999999997 445 9999999999999973 12 2356666665433
No 486
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=67.63 E-value=4.3 Score=32.34 Aligned_cols=44 Identities=20% Similarity=0.141 Sum_probs=34.7
Q ss_pred CCC-CHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecC
Q 041256 49 AKL-SVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (244)
Q Consensus 49 g~~-t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t 101 (244)
..+ |-.+||+..|++ -.- ++.-|+.|...|+++. ..+.|.|-..
T Consensus 29 ~~LPsE~eLa~~~gVS------R~t-VReAL~~L~~eGlv~~--~~g~G~~V~~ 73 (239)
T 1hw1_A 29 TILPAERELSELIGVT------RTT-LREVLQRLARDGWLTI--QHGKPTKVNN 73 (239)
T ss_dssp SBCCCHHHHHHHHTCC------HHH-HHHHHHHHHHTTSEEE--ETTEEEEECC
T ss_pred CCCCCHHHHHHHHCCC------HHH-HHHHHHHHHHCCcEEE--ecCCCcEeeC
Confidence 567 899999999996 234 9999999999999996 3455666543
No 487
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=67.51 E-value=6.1 Score=33.30 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=39.2
Q ss_pred HHHHHHhcchhhHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHHCC-CCeEEEccchHHhhhCC
Q 041256 169 FNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVGGGLGITLNMIISKYP-HIKGINYDLPYVIKDAP 233 (244)
Q Consensus 169 f~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp~vi~~a~ 233 (244)
++..+...+.+. ..++..+- -.+.+.||++|+|-=.....+. .| +++.+-+|+|.|++..+
T Consensus 80 ~~~~~~~Rt~~~-d~~v~~~~-~~g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~ 141 (310)
T 2uyo_A 80 MRSYQAVRTNFF-DTYFNNAV-IDGIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKS 141 (310)
T ss_dssp HHHHHHHHHHHH-HHHHHHHH-HTTCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHH-HhCCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHH
Confidence 444444444443 23333321 1345789999999888866664 35 48889999999998754
No 488
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=67.48 E-value=3.3 Score=30.92 Aligned_cols=48 Identities=17% Similarity=0.287 Sum_probs=36.0
Q ss_pred hcChhhHHhhcCCCCCCCHHHHHHhC-----CCCCCCCcchhccHHHHHHHHhhCCcccce
Q 041256 35 ELDVFEIISKAGPGAKLSVAEIVAQI-----PLKDNNPEAAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 35 ~lgifd~L~~~~~~g~~t~~eLA~~~-----~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 90 (244)
+.-|++.|.+.+ +++.|++||.+.+ +++ ..- ++|.|+.|+..|++.+.
T Consensus 19 R~~Il~~L~~~~-~~h~sa~ei~~~l~~~~~~is------~aT-VYR~L~~L~e~Glv~~~ 71 (150)
T 2w57_A 19 RLKILEVLQQPE-CQHISAEELYKKLIDLGEEIG------LAT-VYRVLNQFDDAGIVTRH 71 (150)
T ss_dssp HHHHHHHHTSGG-GSSEEHHHHHHHHHHTTCCCC------HHH-HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCCC------HHH-HHHHHHHHHHCCcEEEE
Confidence 445788886541 0489999999998 343 333 99999999999999863
No 489
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=67.07 E-value=11 Score=32.09 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=50.9
Q ss_pred CCchhhccCC--chHHHHHHHHHHhcchhhHHHHHhhc-CCCCCcceEEEecCCccHHHHHHHHH-CCCCeEEEccchHH
Q 041256 153 MQIYDYLGVD--SRFNDVFNNGMLSHTSIVMEKVLESY-KGFEHVKKLVDVGGGLGITLNMIISK-YPHIKGINYDLPYV 228 (244)
Q Consensus 153 ~~~~e~~~~~--~~~~~~f~~aM~~~~~~~~~~~~~~~-~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dlp~v 228 (244)
.+|+.++-.. ..+.-..++++...+... ..++..| ....+...||-+|||.=...-.+... .++++..=+|+|+|
T Consensus 48 Dpf~~~Fv~~~~~rr~P~inrG~~~Rt~~i-D~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~v 126 (334)
T 3iei_A 48 DPYIQHFVRLSKERKAPEINRGYFARVHGV-SQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMI 126 (334)
T ss_dssp CSSGGGTSCCCCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHH
T ss_pred CHHHHHHcCcccCCCCchHHHHHHHHHHHH-HHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHH
Confidence 4455555432 234446666666666553 2333322 10124579999999999999998876 47888899999999
Q ss_pred hhh
Q 041256 229 IKD 231 (244)
Q Consensus 229 i~~ 231 (244)
++.
T Consensus 127 i~~ 129 (334)
T 3iei_A 127 VTR 129 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 490
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=66.98 E-value=3.8 Score=33.47 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=43.8
Q ss_pred ChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCc---eeecCcccccc
Q 041256 37 DVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQR---LYSLAPVSAYF 107 (244)
Q Consensus 37 gifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~---~y~~t~~s~~l 107 (244)
.+...|.+.+ ++++|..|||+.++++ +.. +.++|+-|...|++.+.....+. ...+|+.++.+
T Consensus 38 ~vL~~L~~~~-~~~~~~~el~~~l~~~------~~t-~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~ 103 (250)
T 1p4x_A 38 ILLTYLFHQQ-ENTLPFKKIVSDLCYK------QSD-LVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREK 103 (250)
T ss_dssp HHHHHHHSCS-CSEEEHHHHHHHSSSC------GGG-THHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHH
T ss_pred HHHHHHHhcC-CCCcCHHHHHHHHCCC------Hhh-HHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHH
Confidence 3555665531 1479999999999997 445 99999999999999864322222 35566666543
No 491
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=66.77 E-value=6.1 Score=24.25 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=23.0
Q ss_pred CCCCHHHHHHhC-----CCCCCCCcchhccHHHHHHHHhhCCcc
Q 041256 49 AKLSVAEIVAQI-----PLKDNNPEAAAMTLDRVLRLLVSYNAL 87 (244)
Q Consensus 49 g~~t~~eLA~~~-----~~~~~~~~~~~~~l~rlLr~L~~~gll 87 (244)
++.|++||++.+ +++ ..- ++|-|+ ..|++
T Consensus 18 ~~~t~~el~~~l~~~~~~vs------~~T-v~R~L~---~lg~v 51 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVT------QAT-VSRDIK---ELHLV 51 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCC------HHH-HHHHHH---HHTCE
T ss_pred CCCCHHHHHHHHHHhCCCcC------HHH-HHHHHH---HcCCE
Confidence 689999999999 886 334 888888 45777
No 492
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=66.29 E-value=4.1 Score=30.18 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=36.4
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCc-chhccHHHHHHHHhhCCcccce
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPE-AAAMTLDRVLRLLVSYNALHCS 90 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~-~~~~~l~rlLr~L~~~gll~~~ 90 (244)
-+.-|++.|.+. ++.|++||.+.+.-. .|. ...- ++|.|+.|+..|++.+.
T Consensus 20 qR~~Il~~l~~~---~h~ta~ei~~~l~~~--~~~is~~T-VYR~L~~L~e~Glv~~i 71 (145)
T 3eyy_A 20 QRQLVLEAVDTL---EHATPDDILGEVRKT--ASGINIST-VYRTLELLEELGLVSHA 71 (145)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHHHTT--CTTCCHHH-HHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHHhh--CCCCCHhH-HHHHHHHHHHCCcEEEE
Confidence 345577888775 389999999887432 111 1233 99999999999999853
No 493
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=65.76 E-value=9.5 Score=27.45 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcChhhHHhhcCCCCCCCHHHHHHhC-----CCCCCCCcchhccHHHHHHHHhhCCcccceeecCC----
Q 041256 25 VLPAVMQAVVELDVFEIISKAGPGAKLSVAEIVAQI-----PLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQ---- 95 (244)
Q Consensus 25 ~~~~~L~~a~~lgifd~L~~~~~~g~~t~~eLA~~~-----~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~---- 95 (244)
+..+.++-.+++=|...|. . |.+--+|.+.+ +++ +.. +..+|+-|...|+++...+..+
T Consensus 13 ~~~~l~~g~l~~~IL~lL~-~----p~~GYei~~~l~~~~~~is------~gt-lY~~L~rLe~~GlI~~~~~~~~~~~r 80 (123)
T 3ri2_A 13 MVLELRRGTLVMLVLSQLR-E----PAYGYALVKSLADHGIPIE------ANT-LYPLMRRLESQGLLASEWDNGGSKPR 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHTT-S----CEEHHHHHHHHHHTTCCCC------HHH-HHHHHHHHHHTTSEEEEEEECSSCEE
T ss_pred HHHHHHhCcHHHHHHHHHc-C----CCCHHHHHHHHHHhCCCCC------cch-HHHHHHHHHHCCCEEEEeccCCCCCc
Confidence 3444555556666666675 2 67777777764 554 456 9999999999999986432211
Q ss_pred ceeecCcccc
Q 041256 96 RLYSLAPVSA 105 (244)
Q Consensus 96 ~~y~~t~~s~ 105 (244)
-.|++|+.++
T Consensus 81 k~Y~LT~~Gr 90 (123)
T 3ri2_A 81 KYYRTTDEGL 90 (123)
T ss_dssp EEEEECHHHH
T ss_pred eEEEECHHHH
Confidence 2477777665
No 494
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=65.68 E-value=8.7 Score=26.13 Aligned_cols=59 Identities=3% Similarity=0.041 Sum_probs=39.9
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccccccccCCCCCCCHHHHHH
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYFVRNNQNGASLSPYMA 122 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~ 122 (244)
++.|+++||+.+|++ +.. +.|+++......+-.. -..+++......|...+ .++..+..
T Consensus 18 ~~~~~~~lA~~~~~S------~~~-l~r~fk~~~g~s~~~~-----~~~~Rl~~A~~lL~~~~---~si~~iA~ 76 (103)
T 3lsg_A 18 SQFTLSVLSEKLDLS------SGY-LSIMFKKNFGIPFQDY-----LLQKRMEKAKLLLLTTE---LKNYEIAE 76 (103)
T ss_dssp TTCCHHHHHHHTTCC------HHH-HHHHHHHHHSSCHHHH-----HHHHHHHHHHHHHHHCC---CCHHHHHH
T ss_pred CCCCHHHHHHHHCcC------HHH-HHHHHHHHHCcCHHHH-----HHHHHHHHHHHHHHCCC---CCHHHHHH
Confidence 489999999999998 667 9999998877766653 13345555555555433 25555443
No 495
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=65.61 E-value=2 Score=31.16 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=32.0
Q ss_pred CCC-CHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeec
Q 041256 49 AKL-SVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (244)
Q Consensus 49 g~~-t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~ 100 (244)
..+ |..+||+.+|++ ..- +++-++.|...|++.. ..+.|.|-.
T Consensus 33 ~~lPs~~~La~~~~vS------r~t-vr~Al~~L~~~G~i~~--~~~~G~~V~ 76 (126)
T 3ic7_A 33 GRIPSVREYASIVEVN------ANT-VMRSYEYLQSQEVIYN--KRGIGFFVA 76 (126)
T ss_dssp SEECCTTTTTTCC-CC------SGG-GHHHHHHHHTTTSEEE--ETTTEEEEC
T ss_pred CcCcCHHHHHHHHCcC------HHH-HHHHHHHHHHCCcEEE--EcCCccEEc
Confidence 345 889999999997 334 8999999999999985 344455443
No 496
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=65.61 E-value=0.42 Score=41.24 Aligned_cols=58 Identities=9% Similarity=-0.007 Sum_probs=43.5
Q ss_pred HhcChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCc
Q 041256 34 VELDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (244)
Q Consensus 34 ~~lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~ 102 (244)
.+..++-.|-.. |+.|+.|||+.+|++ ... +++.|+-|...|++.... ..+..|+..+
T Consensus 19 ~ea~vY~~Ll~~---g~~t~~eia~~~gv~------~~~-Vy~~L~~L~~~GlV~~~~-g~p~~y~av~ 76 (342)
T 3qph_A 19 YEILTYWTLLVY---GPSTAKEISTKSGIP------YNR-VYDTISSLKLRGFVTEIE-GTPKVYAAYS 76 (342)
T ss_dssp HTTSCSHHHHHH---HHHHHSCCSSSTTSS------SCS-CCHHHHHHHHHTSEEEEC-CTTCEEEECC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HHH-HHHHHHHHHHCCCEEEEc-CceeEEEEcC
Confidence 566777777765 689999999999996 335 889999999999998632 2245565433
No 497
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=65.34 E-value=9.8 Score=26.10 Aligned_cols=69 Identities=10% Similarity=0.170 Sum_probs=43.8
Q ss_pred hhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCccccccccCCCCCCCHH
Q 041256 39 FEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAPVSAYFVRNNQNGASLS 118 (244)
Q Consensus 39 fd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~ 118 (244)
.+.|.+...+.+.|+++||+.+|++ +.. +.|+++......+-.. -..+++.....+|...+ .++.
T Consensus 9 ~~~i~~~~~~~~~~~~~lA~~~~~S------~~~-l~r~fk~~~G~s~~~~-----~~~~Rl~~A~~lL~~~~---~si~ 73 (107)
T 2k9s_A 9 CQYISDHLADSNFDIASVAQHVCLS------PSR-LSHLFRQQLGISVLSW-----REDQRISQAKLLLSTTR---MPIA 73 (107)
T ss_dssp HHHHHHTSSCSSCCHHHHHHHTTSC------HHH-HHHHHHHHHSSCHHHH-----HHHHHHHHHHHHHHHCC---CCHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHCCC------HHH-HHHHHHHHHCcCHHHH-----HHHHHHHHHHHHHHcCC---CCHH
Confidence 3444443212489999999999997 667 9999988877766653 13345555555555333 2565
Q ss_pred HHHH
Q 041256 119 PYMA 122 (244)
Q Consensus 119 ~~~~ 122 (244)
.+..
T Consensus 74 ~IA~ 77 (107)
T 2k9s_A 74 TVGR 77 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 498
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=65.20 E-value=3.8 Score=32.31 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=33.1
Q ss_pred CCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCcee
Q 041256 49 AKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLY 98 (244)
Q Consensus 49 g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y 98 (244)
..++..+||+.+|++ ..- ++.-|+.|...|+++. ..+.|.|
T Consensus 34 ~~L~e~~La~~lgVS------Rtp-VREAL~~L~~eGlv~~--~~~~G~~ 74 (218)
T 3sxy_A 34 EKLNVRELSEKLGIS------FTP-VRDALLQLATEGLVKV--VPRVGFF 74 (218)
T ss_dssp CEECHHHHHHHHTCC------HHH-HHHHHHHHHHHTSEEE--ETTTEEE
T ss_pred CEeCHHHHHHHHCCC------HHH-HHHHHHHHHHCCCEEE--eCCCceE
Confidence 578999999999997 344 9999999999999985 3444443
No 499
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=64.21 E-value=8.5 Score=30.92 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=34.9
Q ss_pred CCC-CHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecC
Q 041256 49 AKL-SVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (244)
Q Consensus 49 g~~-t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t 101 (244)
..+ |..+||+..|++ ..- +++-|+.|...|++.. ..+.|.|-..
T Consensus 27 ~~lPse~~La~~~~vS------r~t-vr~Al~~L~~~g~i~~--~~g~G~~V~~ 71 (239)
T 3bwg_A 27 DKLPVLETLMAQFEVS------KST-ITKSLELLEQKGAIFQ--VRGSGIFVRK 71 (239)
T ss_dssp CBCCCHHHHHHHTTCC------HHH-HHHHHHHHHHTTSEEE--ETTTEEEECC
T ss_pred CCCcCHHHHHHHHCCC------HHH-HHHHHHHHHHCCcEEE--eCCceEEEec
Confidence 456 899999999996 234 9999999999999986 3456766543
No 500
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=64.20 E-value=7.4 Score=31.78 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=40.2
Q ss_pred cChhhHHhhcCCCCCCCHHHHHHhCCCCCCCCcchhccHHHHHHHHhhCCcccceeecCCceeecCc
Q 041256 36 LDVFEIISKAGPGAKLSVAEIVAQIPLKDNNPEAAAMTLDRVLRLLVSYNALHCSFVDGQRLYSLAP 102 (244)
Q Consensus 36 lgifd~L~~~~~~g~~t~~eLA~~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~ 102 (244)
-.|.+.+.+.|- .|-++.||++.++++ +.. +..+|+.|+..|.+.+ ..++.|-++.
T Consensus 144 ~~i~~~~~~~g~-~pp~~~dl~~~l~~~------~~~-~~~~l~~l~~~g~lv~---l~~~~~~~~~ 199 (258)
T 1lva_A 144 KDLEDKYRVSRW-QPPSFKEVAGSFNLD------PSE-LEELLHYLVREGVLVK---INDEFYWHRQ 199 (258)
T ss_dssp HHHHHHHHHHTT-SCCBHHHHHHHTTCC------HHH-HHHHHHHHHHTTSEEE---SSSSBEEEHH
T ss_pred HHHHHHHHHCCC-CCCCHHHHHhHhCCC------HHH-HHHHHHHHHHCCCEEE---ecCCeEEcHH
Confidence 345555654321 266899999999996 456 8899999999999984 4456665543
Done!