BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041258
         (510 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q58FX0|BAP2_ARATH BON1-associated protein 2 OS=Arabidopsis thaliana GN=BAP2 PE=1 SV=1
          Length = 207

 Score = 34.3 bits (77), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 64/136 (47%), Gaps = 15/136 (11%)

Query: 12  LELNIISAQDLAPVSRSMR--TYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDF 69
           LE+ +ISA+ L    + ++  TY+V  +   +  +++VD  G + P W D+F   +    
Sbjct: 10  LEIEVISAEGLKVDRKPLKKKTYSVVRID-EKSWASKVDELGGSYPIWKDRFDMEMP--- 65

Query: 70  LHNDTSAVMIEIFALH--WFRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVR 127
           ++     + IE++       RD +VG  ++ V + +       H       + F++ ++R
Sbjct: 66  INASVRFISIEVYYRTSGSGRDKNVGYAKIPVTDFMGGFAPQGH-------LNFLSYRLR 118

Query: 128 RPSGRPQGILNIGVAL 143
              G   GI+N+ + +
Sbjct: 119 DEYGDKCGIVNVSIMV 134


>sp|A3KGK3|FR1L4_MOUSE Fer-1-like protein 4 OS=Mus musculus GN=Fer1l4 PE=2 SV=3
          Length = 1992

 Score = 33.9 bits (76), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 14  LNIISAQDLAPVSRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHND 73
           + ++ AQ L  V+  +  Y    V   RK++  +   G N P +N+ F+F   E  LH  
Sbjct: 231 VTVLEAQKLVGVN--INPYVAVRVGDQRKVTATL--RGTNCPFYNEYFLFEFHETRLH-- 284

Query: 74  TSAVMIEIFALHW----FRDMHVGTVRVLVGNLIPPPTRSLHH 112
              +++EI A H     F    +GT R+ +G  +  P    H 
Sbjct: 285 LQDLLLEITAFHSQTLPFMATRIGTFRMDLGMALDQPDGHFHQ 327


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.130    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,244,541
Number of Sequences: 539616
Number of extensions: 8910529
Number of successful extensions: 32668
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 31361
Number of HSP's gapped (non-prelim): 1093
length of query: 510
length of database: 191,569,459
effective HSP length: 122
effective length of query: 388
effective length of database: 125,736,307
effective search space: 48785687116
effective search space used: 48785687116
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)