Query 041258
Match_columns 510
No_of_seqs 150 out of 864
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 05:21:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 6.1E-22 1.3E-26 175.5 15.0 117 9-143 1-121 (121)
2 cd04051 C2_SRC2_like C2 domain 99.9 4.2E-22 9.2E-27 172.1 12.7 122 11-139 1-125 (125)
3 cd08681 C2_fungal_Inn1p-like C 99.8 1.1E-20 2.4E-25 161.4 12.9 116 10-143 1-118 (118)
4 cd04019 C2C_MCTP_PRT_plant C2 99.8 1.8E-19 4E-24 164.3 14.1 123 11-146 1-134 (150)
5 cd04042 C2A_MCTP_PRT C2 domain 99.8 5.9E-19 1.3E-23 152.4 15.0 116 12-145 2-121 (121)
6 cd04044 C2A_Tricalbin-like C2 99.8 4.3E-19 9.3E-24 151.6 13.2 119 9-145 1-124 (124)
7 cd04022 C2A_MCTP_PRT_plant C2 99.8 5.5E-19 1.2E-23 154.0 13.9 121 11-145 1-127 (127)
8 cd08379 C2D_MCTP_PRT_plant C2 99.8 9.4E-19 2E-23 156.4 13.7 110 11-139 1-125 (126)
9 cd04015 C2_plant_PLD C2 domain 99.8 1.3E-18 2.8E-23 159.5 14.9 118 9-144 6-158 (158)
10 cd08682 C2_Rab11-FIP_classI C2 99.8 7.9E-19 1.7E-23 152.8 12.7 119 12-142 1-126 (126)
11 cd04046 C2_Calpain C2 domain p 99.8 2.2E-18 4.7E-23 150.9 15.5 120 8-148 1-126 (126)
12 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.6E-18 5.7E-23 150.9 15.1 118 9-145 3-124 (126)
13 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 2.1E-18 4.6E-23 150.2 14.1 122 11-144 1-133 (133)
14 cd04036 C2_cPLA2 C2 domain pre 99.8 3.4E-18 7.5E-23 147.2 14.2 114 11-144 1-118 (119)
15 cd08378 C2B_MCTP_PRT_plant C2 99.8 3.1E-18 6.7E-23 150.0 13.8 119 11-144 1-120 (121)
16 cd08678 C2_C21orf25-like C2 do 99.8 6.3E-18 1.4E-22 147.5 15.1 118 12-147 1-123 (126)
17 cd08375 C2_Intersectin C2 doma 99.8 1.7E-17 3.6E-22 148.7 15.1 123 5-143 10-135 (136)
18 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.6E-17 3.4E-22 145.6 14.5 114 12-143 2-121 (121)
19 cd08395 C2C_Munc13 C2 domain t 99.8 1.1E-17 2.3E-22 148.5 12.9 104 11-128 1-112 (120)
20 cd08677 C2A_Synaptotagmin-13 C 99.8 4.8E-18 1E-22 151.4 10.4 93 7-103 11-107 (118)
21 cd08377 C2C_MCTP_PRT C2 domain 99.7 2.3E-17 5E-22 140.6 14.0 114 10-144 1-119 (119)
22 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2E-17 4.4E-22 140.7 13.3 113 10-143 1-121 (121)
23 cd08382 C2_Smurf-like C2 domai 99.7 2.8E-17 6E-22 143.4 13.5 113 11-141 1-122 (123)
24 cd08376 C2B_MCTP_PRT C2 domain 99.7 4.5E-17 9.7E-22 138.9 14.4 112 11-144 1-115 (116)
25 cd08373 C2A_Ferlin C2 domain f 99.7 6.4E-17 1.4E-21 140.8 14.9 116 16-147 2-119 (127)
26 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 3.5E-17 7.5E-22 141.4 13.0 113 12-142 2-123 (123)
27 cd04014 C2_PKC_epsilon C2 doma 99.7 6.7E-17 1.5E-21 141.8 14.8 114 10-145 4-130 (132)
28 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 8.6E-17 1.9E-21 139.9 14.0 114 12-142 2-120 (121)
29 cd04029 C2A_SLP-4_5 C2 domain 99.7 4.5E-17 9.7E-22 143.4 11.7 97 7-106 12-116 (125)
30 cd08381 C2B_PI3K_class_II C2 d 99.7 4E-17 8.7E-22 143.1 11.2 95 9-106 12-113 (122)
31 cd04049 C2_putative_Elicitor-r 99.7 7.9E-17 1.7E-21 139.4 12.6 95 10-106 1-98 (124)
32 cd04024 C2A_Synaptotagmin-like 99.7 1.5E-16 3.3E-21 136.9 13.5 119 10-143 1-128 (128)
33 cd04040 C2D_Tricalbin-like C2 99.7 1.4E-16 3E-21 135.4 13.0 111 12-139 1-114 (115)
34 cd08392 C2A_SLP-3 C2 domain fi 99.7 9.4E-17 2E-21 142.7 11.7 94 8-104 13-114 (128)
35 cd04010 C2B_RasA3 C2 domain se 99.7 1.2E-16 2.5E-21 146.3 12.1 92 11-105 1-110 (148)
36 KOG1030 Predicted Ca2+-depende 99.7 6.8E-17 1.5E-21 151.9 10.3 93 7-106 3-98 (168)
37 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.5E-16 3.3E-21 137.6 11.8 98 6-106 12-114 (124)
38 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.3E-16 2.8E-21 140.0 10.9 95 8-105 13-115 (125)
39 cd04039 C2_PSD C2 domain prese 99.7 1.7E-16 3.7E-21 137.1 10.7 93 10-107 1-100 (108)
40 cd04030 C2C_KIAA1228 C2 domain 99.7 2.5E-16 5.5E-21 135.9 11.8 97 7-106 13-118 (127)
41 cd04050 C2B_Synaptotagmin-like 99.7 2.6E-16 5.7E-21 133.3 11.6 88 11-106 1-90 (105)
42 cd04011 C2B_Ferlin C2 domain s 99.7 3E-16 6.6E-21 133.9 12.1 108 9-129 3-111 (111)
43 cd08385 C2A_Synaptotagmin-1-5- 99.7 2.8E-16 6E-21 135.7 11.8 95 8-105 14-113 (124)
44 cd04043 C2_Munc13_fungal C2 do 99.7 7.6E-16 1.7E-20 133.1 14.5 116 11-145 2-122 (126)
45 cd04021 C2_E3_ubiquitin_ligase 99.7 7.7E-16 1.7E-20 135.1 14.3 118 10-141 2-124 (125)
46 cd08388 C2A_Synaptotagmin-4-11 99.7 4.2E-16 9.1E-21 137.7 12.5 96 7-105 13-115 (128)
47 cd04041 C2A_fungal C2 domain f 99.7 2.1E-16 4.5E-21 135.4 10.2 94 10-105 1-100 (111)
48 cd00275 C2_PLC_like C2 domain 99.7 9.7E-16 2.1E-20 131.6 14.1 115 10-143 2-127 (128)
49 cd08680 C2_Kibra C2 domain fou 99.7 2.4E-16 5.1E-21 140.2 10.6 96 7-105 11-114 (124)
50 cd08394 C2A_Munc13 C2 domain f 99.7 4.6E-16 1E-20 140.6 12.4 89 9-106 1-89 (127)
51 cd08685 C2_RGS-like C2 domain 99.7 2.4E-16 5.2E-21 138.1 10.1 95 8-106 10-111 (119)
52 cd08521 C2A_SLP C2 domain firs 99.7 4.3E-16 9.4E-21 133.5 11.3 96 7-105 11-114 (123)
53 cd08389 C2A_Synaptotagmin-14_1 99.7 4.2E-16 9.1E-21 136.9 11.3 95 8-106 14-114 (124)
54 PLN03008 Phospholipase D delta 99.7 7.7E-16 1.7E-20 171.8 16.0 128 9-156 13-187 (868)
55 cd08383 C2A_RasGAP C2 domain ( 99.7 1.2E-15 2.6E-20 129.5 13.3 114 12-143 2-117 (117)
56 cd04028 C2B_RIM1alpha C2 domai 99.7 8.8E-16 1.9E-20 140.8 13.2 102 9-128 28-138 (146)
57 cd04017 C2D_Ferlin C2 domain f 99.7 1.5E-15 3.2E-20 134.5 14.0 124 11-146 2-134 (135)
58 cd08688 C2_KIAA0528-like C2 do 99.7 4.9E-16 1.1E-20 133.0 10.3 90 12-105 1-95 (110)
59 cd08691 C2_NEDL1-like C2 domai 99.7 2E-15 4.3E-20 136.7 14.7 115 11-141 2-136 (137)
60 cd04045 C2C_Tricalbin-like C2 99.7 1.1E-15 2.3E-20 133.8 11.9 91 10-106 1-94 (120)
61 cd04027 C2B_Munc13 C2 domain s 99.6 2.2E-15 4.7E-20 132.2 13.6 110 11-141 2-127 (127)
62 cd04031 C2A_RIM1alpha C2 domai 99.6 1.1E-15 2.4E-20 131.3 11.2 92 8-102 14-113 (125)
63 cd04052 C2B_Tricalbin-like C2 99.6 9.9E-16 2.1E-20 131.5 10.5 102 26-146 10-111 (111)
64 cd08386 C2A_Synaptotagmin-7 C2 99.6 2.1E-15 4.6E-20 130.1 11.9 97 6-105 12-114 (125)
65 cd04009 C2B_Munc13-like C2 dom 99.6 2.4E-15 5.3E-20 132.8 11.0 98 8-106 14-120 (133)
66 cd04013 C2_SynGAP_like C2 doma 99.6 7.7E-15 1.7E-19 134.9 14.5 119 9-148 10-143 (146)
67 cd08690 C2_Freud-1 C2 domain f 99.6 1.2E-14 2.6E-19 134.8 15.0 120 11-145 3-138 (155)
68 cd08390 C2A_Synaptotagmin-15-1 99.6 6.4E-15 1.4E-19 126.6 11.9 97 7-106 11-113 (123)
69 cd04038 C2_ArfGAP C2 domain pr 99.6 1.2E-14 2.7E-19 132.5 14.3 91 9-106 1-93 (145)
70 cd08406 C2B_Synaptotagmin-12 C 99.6 5.3E-15 1.1E-19 133.3 10.0 92 7-101 12-110 (136)
71 cd04018 C2C_Ferlin C2 domain t 99.6 6.7E-15 1.4E-19 135.4 10.5 91 11-106 1-108 (151)
72 cd08676 C2A_Munc13-like C2 dom 99.6 8.8E-15 1.9E-19 135.0 11.1 92 5-104 23-144 (153)
73 cd04032 C2_Perforin C2 domain 99.6 1.2E-14 2.6E-19 130.2 11.6 91 8-103 26-118 (127)
74 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.4E-14 2.9E-19 125.3 11.5 97 7-106 12-115 (123)
75 cd08384 C2B_Rabphilin_Doc2 C2 99.6 9E-15 1.9E-19 128.0 10.3 92 7-101 10-108 (133)
76 cd08402 C2B_Synaptotagmin-1 C2 99.6 9.1E-15 2E-19 128.9 10.0 92 7-101 12-110 (136)
77 cd08407 C2B_Synaptotagmin-13 C 99.6 6.8E-15 1.5E-19 133.5 9.3 91 8-101 13-112 (138)
78 cd08675 C2B_RasGAP C2 domain s 99.6 1.4E-14 3.1E-19 129.8 11.3 94 12-106 1-110 (137)
79 cd08409 C2B_Synaptotagmin-15 C 99.6 1.2E-14 2.6E-19 129.8 10.3 94 7-103 12-111 (137)
80 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 1.7E-14 3.6E-19 133.2 11.1 96 8-106 25-128 (162)
81 cd08403 C2B_Synaptotagmin-3-5- 99.6 1.3E-14 2.8E-19 127.6 9.9 92 6-100 10-108 (134)
82 cd08404 C2B_Synaptotagmin-4 C2 99.6 1.7E-14 3.6E-19 127.5 10.2 92 7-101 12-110 (136)
83 cd08410 C2B_Synaptotagmin-17 C 99.6 2E-14 4.3E-19 127.8 10.5 90 7-99 11-107 (135)
84 cd08408 C2B_Synaptotagmin-14_1 99.6 1.8E-14 3.9E-19 129.6 10.1 93 7-102 12-112 (138)
85 cd04048 C2A_Copine C2 domain f 99.5 4.9E-14 1.1E-18 121.9 11.9 86 16-106 6-104 (120)
86 cd08405 C2B_Synaptotagmin-7 C2 99.5 2E-14 4.4E-19 126.7 9.7 92 8-102 13-111 (136)
87 cd00276 C2B_Synaptotagmin C2 d 99.5 3.4E-14 7.4E-19 122.9 9.9 90 9-101 13-109 (134)
88 cd04026 C2_PKC_alpha_gamma C2 99.5 6.6E-14 1.4E-18 122.3 11.1 106 10-132 13-126 (131)
89 KOG1028 Ca2+-dependent phospho 99.5 7.2E-14 1.6E-18 147.0 13.4 125 8-147 165-297 (421)
90 cd04037 C2E_Ferlin C2 domain f 99.5 8.4E-14 1.8E-18 122.1 11.1 89 11-104 1-93 (124)
91 PLN03200 cellulose synthase-in 99.5 4.4E-14 9.5E-19 169.2 11.8 124 5-145 1975-2101(2102)
92 cd08686 C2_ABR C2 domain in th 99.5 1.6E-13 3.4E-18 122.8 10.3 79 12-100 1-91 (118)
93 PF00168 C2: C2 domain; Inter 99.5 2.3E-13 4.9E-18 106.7 9.8 80 12-96 1-85 (85)
94 cd08692 C2B_Tac2-N C2 domain s 99.4 4.5E-13 9.8E-18 122.2 10.3 92 7-102 11-110 (135)
95 PLN02270 phospholipase D alpha 99.4 1.4E-12 3.1E-17 145.7 14.8 129 9-156 7-158 (808)
96 cd04047 C2B_Copine C2 domain s 99.4 1.1E-12 2.4E-17 111.2 10.1 91 14-106 4-102 (110)
97 smart00239 C2 Protein kinase C 99.3 2E-11 4.3E-16 96.6 10.8 91 11-106 1-96 (101)
98 cd00030 C2 C2 domain. The C2 d 99.2 5.5E-11 1.2E-15 92.7 9.8 87 12-103 1-90 (102)
99 cd08374 C2F_Ferlin C2 domain s 99.2 5.2E-11 1.1E-15 108.4 10.1 92 12-106 2-125 (133)
100 PLN02223 phosphoinositide phos 99.2 1.2E-10 2.5E-15 126.1 13.6 104 10-133 409-524 (537)
101 KOG0696 Serine/threonine prote 99.2 1.3E-11 2.8E-16 130.5 5.3 94 9-106 179-279 (683)
102 PLN02952 phosphoinositide phos 99.2 1.8E-10 3.8E-15 126.4 14.0 116 9-144 469-597 (599)
103 COG5038 Ca2+-dependent lipid-b 99.1 3.2E-10 6.8E-15 129.9 11.8 122 8-147 434-560 (1227)
104 PLN02230 phosphoinositide phos 99.1 1.1E-09 2.4E-14 120.2 12.4 115 9-143 468-597 (598)
105 PLN02352 phospholipase D epsil 99.0 1.8E-09 4E-14 120.8 12.9 123 9-156 9-140 (758)
106 COG5038 Ca2+-dependent lipid-b 99.0 9.3E-10 2E-14 126.1 9.8 97 5-106 1035-1134(1227)
107 PLN02222 phosphoinositide phos 99.0 3.9E-09 8.5E-14 115.6 14.3 115 9-143 451-580 (581)
108 KOG1011 Neurotransmitter relea 99.0 8.3E-10 1.8E-14 120.7 8.2 125 10-155 295-435 (1283)
109 PLN02228 Phosphoinositide phos 99.0 5.1E-09 1.1E-13 114.5 13.6 117 10-146 431-563 (567)
110 cd08689 C2_fungal_Pkc1p C2 dom 98.9 1.6E-09 3.4E-14 96.3 6.8 85 12-106 1-90 (109)
111 KOG0169 Phosphoinositide-speci 98.9 4.1E-09 8.9E-14 117.0 11.7 117 10-145 616-745 (746)
112 KOG1028 Ca2+-dependent phospho 98.9 2.8E-09 6E-14 112.6 9.7 92 7-101 295-393 (421)
113 KOG2059 Ras GTPase-activating 98.8 1.5E-08 3.4E-13 111.8 9.4 123 9-147 4-128 (800)
114 KOG1264 Phospholipase C [Lipid 98.6 2.2E-07 4.7E-12 104.2 9.6 91 10-104 1065-1162(1267)
115 KOG1328 Synaptic vesicle prote 98.5 5.3E-08 1.2E-12 108.0 2.0 94 9-103 946-1048(1103)
116 KOG1031 Predicted Ca2+-depende 98.3 2E-06 4.4E-11 94.1 8.9 132 10-148 3-140 (1169)
117 KOG1328 Synaptic vesicle prote 98.3 1.5E-07 3.2E-12 104.6 0.1 126 6-147 110-304 (1103)
118 KOG2059 Ras GTPase-activating 97.8 4.6E-05 1E-09 85.1 7.2 123 13-148 134-280 (800)
119 KOG1013 Synaptic vesicle prote 97.7 6.8E-06 1.5E-10 85.2 -0.4 126 9-145 92-230 (362)
120 KOG0905 Phosphoinositide 3-kin 97.7 3.2E-05 6.9E-10 89.9 4.5 93 9-104 1523-1623(1639)
121 KOG1011 Neurotransmitter relea 97.3 0.00094 2E-08 74.6 9.4 105 10-128 1125-1237(1283)
122 KOG1265 Phospholipase C [Lipid 97.2 0.0012 2.5E-08 75.8 9.4 87 10-105 703-797 (1189)
123 PLN02964 phosphatidylserine de 97.2 0.00052 1.1E-08 76.9 6.5 88 9-106 53-141 (644)
124 cd08684 C2A_Tac2-N C2 domain f 97.2 0.00044 9.5E-09 60.9 4.5 89 13-105 2-95 (103)
125 PF10358 NT-C2: N-terminal C2 97.2 0.02 4.4E-07 50.8 14.8 125 9-147 6-138 (143)
126 KOG1326 Membrane-associated pr 97.1 0.00031 6.8E-09 80.9 3.5 92 9-105 612-707 (1105)
127 KOG1013 Synaptic vesicle prote 96.7 0.0024 5.1E-08 66.8 5.2 89 9-100 232-327 (362)
128 cd08693 C2_PI3K_class_I_beta_d 96.6 0.013 2.8E-07 55.6 9.2 74 10-85 8-86 (173)
129 cd08683 C2_C2cd3 C2 domain fou 96.5 0.0015 3.2E-08 60.9 2.4 92 12-106 1-134 (143)
130 cd08380 C2_PI3K_like C2 domain 96.4 0.017 3.6E-07 53.0 8.8 91 10-102 8-107 (156)
131 cd08398 C2_PI3K_class_I_alpha 96.4 0.022 4.7E-07 53.7 9.2 88 10-101 8-105 (158)
132 KOG3837 Uncharacterized conser 95.8 0.0083 1.8E-07 64.6 4.1 121 10-145 367-504 (523)
133 KOG1326 Membrane-associated pr 95.7 0.0029 6.3E-08 73.3 0.2 114 12-141 208-329 (1105)
134 cd04012 C2A_PI3K_class_II C2 d 95.4 0.075 1.6E-06 50.0 8.5 92 9-101 7-118 (171)
135 PF11618 DUF3250: Protein of u 95.2 0.04 8.7E-07 49.1 5.7 101 32-144 2-105 (107)
136 cd08399 C2_PI3K_class_I_gamma 95.0 0.36 7.7E-06 46.7 11.8 126 10-149 10-143 (178)
137 KOG2060 Rab3 effector RIM1 and 94.8 0.032 6.9E-07 59.5 4.5 103 9-128 268-379 (405)
138 cd08397 C2_PI3K_class_III C2 d 94.5 0.13 2.8E-06 48.4 7.4 74 27-102 28-107 (159)
139 PF15627 CEP76-C2: CEP76 C2 do 94.5 0.74 1.6E-05 43.9 12.2 130 7-147 6-153 (156)
140 PF00792 PI3K_C2: Phosphoinosi 93.8 0.23 4.9E-06 45.1 7.2 72 30-102 3-85 (142)
141 KOG1452 Predicted Rho GTPase-a 93.0 0.2 4.4E-06 52.8 6.3 113 9-146 50-169 (442)
142 PF14429 DOCK-C2: C2 domain in 92.0 0.62 1.3E-05 44.0 7.6 57 42-101 60-120 (184)
143 cd08687 C2_PKN-like C2 domain 91.4 1.5 3.4E-05 39.0 8.8 64 29-102 9-72 (98)
144 KOG1327 Copine [Signal transdu 90.1 0.46 1E-05 52.8 5.4 77 26-104 154-236 (529)
145 cd08695 C2_Dock-B C2 domains f 88.6 1.2 2.5E-05 43.7 6.4 55 42-99 54-111 (189)
146 cd08679 C2_DOCK180_related C2 88.5 1.4 2.9E-05 41.8 6.7 54 44-101 56-115 (178)
147 cd08694 C2_Dock-A C2 domains f 88.1 1.3 2.8E-05 43.8 6.3 57 41-100 53-114 (196)
148 PF12416 DUF3668: Cep120 prote 86.8 8.8 0.00019 40.8 12.1 127 12-148 2-136 (340)
149 smart00142 PI3K_C2 Phosphoinos 86.6 3.7 8.1E-05 35.5 7.8 72 12-85 13-91 (100)
150 PF15625 CC2D2AN-C2: CC2D2A N- 84.6 3.6 7.7E-05 38.9 7.2 73 28-105 36-109 (168)
151 cd08696 C2_Dock-C C2 domains f 77.1 7.2 0.00016 37.9 6.6 56 42-100 55-117 (179)
152 KOG1329 Phospholipase D1 [Lipi 73.6 4.2 9.2E-05 47.8 4.7 73 29-106 138-211 (887)
153 cd08697 C2_Dock-D C2 domains f 68.4 17 0.00036 35.6 6.9 57 42-101 57-123 (185)
154 PF14186 Aida_C2: Cytoskeletal 65.5 18 0.0004 34.4 6.3 95 9-105 12-115 (147)
155 KOG3543 Ca2+-dependent activat 54.0 83 0.0018 36.8 9.8 80 11-98 342-425 (1218)
156 KOG2419 Phosphatidylserine dec 49.5 3.6 7.8E-05 47.2 -1.4 51 13-66 283-339 (975)
157 PF07162 B9-C2: Ciliary basal 47.6 2.3E+02 0.005 26.7 10.5 83 13-100 5-102 (168)
158 PF14924 DUF4497: Protein of u 38.7 75 0.0016 28.1 5.4 87 60-147 12-107 (112)
159 KOG0904 Phosphatidylinositol 3 30.1 83 0.0018 37.9 5.3 72 10-84 343-421 (1076)
160 KOG1327 Copine [Signal transdu 29.6 54 0.0012 37.1 3.7 59 43-106 43-106 (529)
161 PTZ00447 apical membrane antig 28.4 3.8E+02 0.0083 29.6 9.5 100 26-142 71-171 (508)
162 KOG0694 Serine/threonine prote 26.4 47 0.001 38.7 2.5 50 28-84 27-76 (694)
163 PF12416 DUF3668: Cep120 prote 22.2 3E+02 0.0066 29.5 7.4 91 9-106 191-297 (340)
164 KOG3217 Protein tyrosine phosp 22.1 32 0.0007 33.2 0.2 11 461-471 9-19 (159)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.88 E-value=6.1e-22 Score=175.53 Aligned_cols=117 Identities=19% Similarity=0.288 Sum_probs=97.1
Q ss_pred ceEEEEEEEEecCCCCC-CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC
Q 041258 9 FQLLELNIISAQDLAPV-SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF 87 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v-~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~ 87 (510)
.|+|+|+|++|++|++. .+++||||+++++ .++++|+|+.+++.||+|||+|.|.|++. ...|.|+|||++.+
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg-~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-----~~~l~~~V~d~d~~ 74 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVG-HAVYETPTAYNGAKNPRWNKTIQCTLPEG-----VDSIYIEIFDERAF 74 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEEEEC-CEEEEeEEccCCCCCCccCeEEEEEecCC-----CcEEEEEEEeCCCC
Confidence 37999999999999887 4999999999995 57889999988899999999999999864 35799999999966
Q ss_pred -CCcceEEEEEeCcc-cCCCCCCCCCCCCCcccceEEEEEeeCCCC-CcceEEEEEEEE
Q 041258 88 -RDMHVGTVRVLVGN-LIPPPTRSLHHSHRSFGMRFVALQVRRPSG-RPQGILNIGVAL 143 (510)
Q Consensus 88 -gDdlIGeVrVPLsd-Ll~~~~R~~h~~~~~~~~r~vsyqLrrpSG-KpqG~LnLsV~f 143 (510)
+|++||++.|+|.+ +..+.. ...||+|....+ +..|.|+|.++|
T Consensus 75 ~~dd~iG~~~i~l~~~~~~g~~------------~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 75 TMDERIAWTHITIPESVFNGET------------LDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred cCCceEEEEEEECchhccCCCC------------ccccEeCcCccCCCCceEEEEEEeC
Confidence 68999999999974 554331 234788865444 468999999985
No 2
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.88 E-value=4.2e-22 Score=172.11 Aligned_cols=122 Identities=43% Similarity=0.743 Sum_probs=103.7
Q ss_pred EEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecC-C
Q 041258 11 LLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHW-F 87 (510)
Q Consensus 11 tLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~-~ 87 (510)
+|+|+|++|++|+.. .+++||||++++.+.++++|+++.+++.||+|||+|.|.+.+..+......|.|+|||.+. .
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 589999999999987 4899999999998757889999877899999999999999886432346799999999986 5
Q ss_pred CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEE
Q 041258 88 RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNI 139 (510)
Q Consensus 88 gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnL 139 (510)
+|++||++.|+|.+++.+.. . .......||+|.+++|+++|+|+|
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~-~------~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGAS-P------AGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccC-C------CCcceeEEEEeECCCCCcCeEEeC
Confidence 78999999999999997663 1 012356799999999999999986
No 3
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.85 E-value=1.1e-20 Score=161.45 Aligned_cols=116 Identities=16% Similarity=0.268 Sum_probs=98.2
Q ss_pred eEEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC
Q 041258 10 QLLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF 87 (510)
Q Consensus 10 gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~ 87 (510)
|.|+|+|++|++|++. .+++||||++++++ .+.+|++..+++.||+|||.|.|.+... ....|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~~----~~~~l~i~v~d~~~~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEITED----KKPILKVAVFDDDKR 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-CccccccccCCCCCCccCceEEEEecCC----CCCEEEEEEEeCCCC
Confidence 5899999999999986 48999999999964 7889998776789999999999999874 256899999999877
Q ss_pred CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEE
Q 041258 88 RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVAL 143 (510)
Q Consensus 88 gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f 143 (510)
+|++||++.|+|.+++.+.. ...||+|.. +++..|.|.|.++|
T Consensus 76 ~~~~iG~~~~~l~~~~~~~~------------~~~w~~L~~-~~~~~G~i~l~l~f 118 (118)
T cd08681 76 KPDLIGDTEVDLSPALKEGE------------FDDWYELTL-KGRYAGEVYLELTF 118 (118)
T ss_pred CCcceEEEEEecHHHhhcCC------------CCCcEEecc-CCcEeeEEEEEEEC
Confidence 79999999999999876431 123678764 67899999999986
No 4
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=1.8e-19 Score=164.30 Aligned_cols=123 Identities=20% Similarity=0.339 Sum_probs=100.4
Q ss_pred EEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-
Q 041258 11 LLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF- 87 (510)
Q Consensus 11 tLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~- 87 (510)
+|+|+|++|++|+.. ++++||||++.+++ ++++|++..+++.||+|||+|.|.+.+.. ...|.|+|+|.+.+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~~~~----~~~l~v~V~d~~~~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAAEPF----EDHLILSVEDRVGPN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEecCcc----CCeEEEEEEEecCCC
Confidence 489999999999886 48999999999975 78899998766799999999999997642 36899999999855
Q ss_pred CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCC--------CcceEEEEEEEEeeC
Q 041258 88 RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSG--------RPQGILNIGVALLDS 146 (510)
Q Consensus 88 gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSG--------KpqG~LnLsV~f~d~ 146 (510)
+|++||++.|||.++..+.. . ......||+|..+.| +.+|.|+|.++|.+.
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~-~-------~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVD-D-------RPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CCCeEEEEEEEHHHCcccCC-C-------CccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 79999999999999875421 0 112335899987654 678999999999853
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.81 E-value=5.9e-19 Score=152.36 Aligned_cols=116 Identities=19% Similarity=0.312 Sum_probs=98.3
Q ss_pred EEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-C
Q 041258 12 LELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF-R 88 (510)
Q Consensus 12 LEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~-g 88 (510)
|+|+|++|++|+.. .+.+||||++.+.+...++|++.++ +.||+|||+|.|.+... ...|.|+|||++.+ +
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~-----~~~l~~~v~D~d~~~~ 75 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYK-NLNPVWDEKFTLPIEDV-----TQPLYIKVFDYDRGLT 75 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccC-CCCCccceeEEEEecCC-----CCeEEEEEEeCCCCCC
Confidence 89999999999876 4899999999997656789998865 89999999999998752 46899999999876 8
Q ss_pred CcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCC-CcceEEEEEEEEee
Q 041258 89 DMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSG-RPQGILNIGVALLD 145 (510)
Q Consensus 89 DdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSG-KpqG~LnLsV~f~d 145 (510)
|++||.+.|+|.++..+.. ...+|+|..+.+ +..|.|+|.++|.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~~------------~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 76 DDFMGSAFVDLSTLELNKP------------TEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CcceEEEEEEHHHcCCCCC------------eEEEEECCCCCCccCceEEEEEEEECC
Confidence 9999999999999986542 345889976543 78999999999864
No 6
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.81 E-value=4.3e-19 Score=151.56 Aligned_cols=119 Identities=20% Similarity=0.349 Sum_probs=98.3
Q ss_pred ceEEEEEEEEecCCCCC---CCCCCcEEEEEEcC-CCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEee
Q 041258 9 FQLLELNIISAQDLAPV---SRSMRTYAVAWVHP-NRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFAL 84 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v---~GKmDPYVVV~I~p-d~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~ 84 (510)
.|.|+|+|++|++|+.. .+.+||||++.+.+ ..+.+|++.++ +.||+|||.|.|.+.+ ....|.|+|||+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~-~~~P~Wne~~~~~v~~-----~~~~l~~~v~d~ 74 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKD-TSNPVWNETKYILVNS-----LTEPLNLTVYDF 74 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecC-CCCCcceEEEEEEeCC-----CCCEEEEEEEec
Confidence 37899999999999964 26799999999987 47889999864 9999999999999984 256899999999
Q ss_pred cCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEEee
Q 041258 85 HWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVALLD 145 (510)
Q Consensus 85 d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f~d 145 (510)
+.+ +|++||.+.++|.++..... ....++++. .+++++|.|+|.++|.|
T Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~-----------~~~~~~~~~-~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 75 NDKRKDKLIGTAEFDLSSLLQNPE-----------QENLTKNLL-RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCCCceeEEEEEEHHHhccCcc-----------ccCcchhhh-cCCccceEEEEEEEeCC
Confidence 865 78999999999999987552 111234443 58899999999999975
No 7
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=5.5e-19 Score=154.03 Aligned_cols=121 Identities=24% Similarity=0.368 Sum_probs=97.5
Q ss_pred EEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-
Q 041258 11 LLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF- 87 (510)
Q Consensus 11 tLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~- 87 (510)
.|+|+|++|++|... .+.+||||++.+.+ ++++|+|.+ ++.||+|||.|.|.+.+... .....|.|+|||.+.+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~rT~v~~-~t~nP~Wne~f~f~~~~~~~-~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG-QKKRTRTKP-KDLNPVWNEKLVFNVSDPSR-LSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EEecceeEc-CCCCCccceEEEEEccCHHH-ccCCeEEEEEeeCCCCc
Confidence 489999999999876 47899999999974 678999986 58999999999999975321 0246899999998865
Q ss_pred -CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCC--CCCcceEEEEEEEEee
Q 041258 88 -RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRP--SGRPQGILNIGVALLD 145 (510)
Q Consensus 88 -gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrp--SGKpqG~LnLsV~f~d 145 (510)
+|++||++.|+|.++...+. ....||+|.++ .++++|+|.|.+.|.+
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~-----------~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSE-----------AVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCC-----------ccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 79999999999999984331 12347888764 4578999999999864
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=9.4e-19 Score=156.35 Aligned_cols=110 Identities=23% Similarity=0.342 Sum_probs=90.5
Q ss_pred EEEEEEEEecC---CCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeec
Q 041258 11 LLELNIISAQD---LAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALH 85 (510)
Q Consensus 11 tLEVTVISAqd---Lk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d 85 (510)
.|+|+|++|++ |+.. .+.+||||++.++ .++.+|+|..+ +.||+|||+|.|++.+. ...|.|+|||++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g-~~~~rTk~~~~-~~nP~WnE~f~f~v~~~-----~~~l~v~V~d~d 73 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG-PKWVRTRTVED-SSNPRWNEQYTWPVYDP-----CTVLTVGVFDNS 73 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEEC-CEEeEcCcccC-CCCCcceeEEEEEecCC-----CCEEEEEEEECC
Confidence 38999999999 6544 4899999999995 57889999875 89999999999999763 358999999998
Q ss_pred CC-------CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCC---CCCcceEEEE
Q 041258 86 WF-------RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRP---SGRPQGILNI 139 (510)
Q Consensus 86 ~~-------gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrp---SGKpqG~LnL 139 (510)
.+ +|++||++.|+|.++..+.. ...||+|+.. .++..|.|+.
T Consensus 74 ~~~~~~~~~~dd~lG~~~i~l~~l~~~~~------------~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 74 QSHWKEAVQPDVLIGKVRIRLSTLEDDRV------------YAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CccccccCCCCceEEEEEEEHHHccCCCE------------EeeEEEeEeCCCCCccCCcEEEe
Confidence 65 89999999999999986542 3458898753 3567788865
No 9
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.79 E-value=1.3e-18 Score=159.54 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=98.0
Q ss_pred ceEEEEEEEEecCCCCCC--------------------------------CCCCcEEEEEEcCCCeeEeeecCCCCCCce
Q 041258 9 FQLLELNIISAQDLAPVS--------------------------------RSMRTYAVAWVHPNRKLSTRVDAHGRNNPT 56 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v~--------------------------------GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPv 56 (510)
.|+|+|+|++|++|+++. +.+||||+|.+++.+..+|+|.++ +.||+
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~-~~nP~ 84 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIEN-SENPV 84 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCC-CCCCc
Confidence 489999999999998742 457999999997655679999865 79999
Q ss_pred eceEEEEEecCCCCCCCCceEEEEEEeecCCCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCC---c
Q 041258 57 WNDKFVFRVDEDFLHNDTSAVMIEIFALHWFRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGR---P 133 (510)
Q Consensus 57 WNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGK---p 133 (510)
|||.|.|++.+. ...|.|+|+|.+.+++++||.+.|||.++..+.. ...||+|..+.++ .
T Consensus 85 WnE~F~~~~~~~-----~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~------------~~~w~~L~~~~~~~~~~ 147 (158)
T cd04015 85 WNESFHIYCAHY-----ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEP------------VEGWLPILDSNGKPPKP 147 (158)
T ss_pred cceEEEEEccCC-----CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCC------------cceEEECcCCCCCCCCC
Confidence 999999999764 3579999999998889999999999999986442 2347999876555 4
Q ss_pred ceEEEEEEEEe
Q 041258 134 QGILNIGVALL 144 (510)
Q Consensus 134 qG~LnLsV~f~ 144 (510)
.|.|+|.++|.
T Consensus 148 ~~~l~v~~~f~ 158 (158)
T cd04015 148 GAKIRVSLQFT 158 (158)
T ss_pred CCEEEEEEEEC
Confidence 68999999984
No 10
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.79 E-value=7.9e-19 Score=152.82 Aligned_cols=119 Identities=14% Similarity=0.304 Sum_probs=93.3
Q ss_pred EEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCC-CCCceEEEEEEeecCC-
Q 041258 12 LELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLH-NDTSAVMIEIFALHWF- 87 (510)
Q Consensus 12 LEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~-~~~s~L~VEVyD~d~~- 87 (510)
|+|+|++|++|+.. .+.+||||++.+. ..+++|+|+++ +.||+|||+|.|.|...... .....|.|+|||.+.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~-~~~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~ 78 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG-KEKYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG 78 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC-CeeeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC
Confidence 58999999999876 4889999999996 46889999875 79999999999999773110 1356899999999866
Q ss_pred CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCC---CCCcceEEEEEEE
Q 041258 88 RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRP---SGRPQGILNIGVA 142 (510)
Q Consensus 88 gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrp---SGKpqG~LnLsV~ 142 (510)
+|++||++.|+|.++..... .....||+|... ..+..|+|.|.++
T Consensus 79 ~d~~iG~~~i~l~~l~~~~~----------~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 79 LDKFLGQVSIPLNDLDEDKG----------RRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CCceeEEEEEEHHHhhccCC----------CcccEEEECcCCCCCCccccceEEEEeC
Confidence 69999999999999973221 112358888643 2357899999874
No 11
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.79 E-value=2.2e-18 Score=150.91 Aligned_cols=120 Identities=16% Similarity=0.295 Sum_probs=99.3
Q ss_pred cceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeec
Q 041258 8 PFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALH 85 (510)
Q Consensus 8 P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d 85 (510)
|...|+|+|++|++|+.. ++.+||||++++. .++.+|+|.+ ++.||+|||.|.|.+... ...|.|+|||.+
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~-~~~~kT~v~~-~t~nP~Wne~f~f~~~~~-----~~~l~i~V~d~~ 73 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCE-GESVRSPVQK-DTLSPEFDTQAIFYRKKP-----RSPIKIQVWNSN 73 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEEC-CEEEEeCccC-CCCCCcccceEEEEecCC-----CCEEEEEEEECC
Confidence 568999999999999876 5899999999986 4688999986 589999999999988653 568999999998
Q ss_pred CCCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEee----CCCCCcceEEEEEEEEeeCCC
Q 041258 86 WFRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVR----RPSGRPQGILNIGVALLDSSM 148 (510)
Q Consensus 86 ~~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLr----rpSGKpqG~LnLsV~f~d~sm 148 (510)
.++|++||.+.|++.++.... .+ +|+|. .++++..|.|.|.+.+.+..|
T Consensus 74 ~~~d~~lG~~~~~l~~~~~~~------------~~--~~~l~~~~~~~~~~~~G~i~~~~~~~~~~~ 126 (126)
T cd04046 74 LLCDEFLGQATLSADPNDSQT------------LR--TLPLRKRGRDAAGEVPGTISVKVTSSDDLT 126 (126)
T ss_pred CCCCCceEEEEEecccCCCcC------------ce--EEEcccCCCCCCCCCCCEEEEEEEEccccC
Confidence 888999999999998754221 12 34553 368899999999999887654
No 12
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.79 E-value=2.6e-18 Score=150.88 Aligned_cols=118 Identities=21% Similarity=0.252 Sum_probs=95.3
Q ss_pred ceEEEEEEEEecCCCCCCCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-
Q 041258 9 FQLLELNIISAQDLAPVSRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF- 87 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~- 87 (510)
.+.|+|+|++|+||+.. +.+||||.|.+++.++.+|++. ++.||+|||.|.|.+.+.. ...|+|.|||.+.+
T Consensus 3 ~~~L~V~Vi~A~~L~~~-~~~DPYv~v~l~~~~~~kT~v~--~~~nP~WnE~f~f~~~~~~----~~~l~v~v~d~~~~~ 75 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK-HVPHPYCVISLNEVKVARTKVR--EGPNPVWSEEFVFDDLPPD----VNSFTISLSNKAKRS 75 (126)
T ss_pred eeEEEEEEEEeeCCCCC-CCCCeeEEEEECCEeEEEeecC--CCCCCccCCEEEEecCCCC----cCEEEEEEEECCCCC
Confidence 46899999999999864 5789999999975556799984 3799999999999876543 24789999998754
Q ss_pred CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCC---CCcceEEEEEEEEee
Q 041258 88 RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPS---GRPQGILNIGVALLD 145 (510)
Q Consensus 88 gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpS---GKpqG~LnLsV~f~d 145 (510)
+|++||.+.|||.++..+.. ...||+|...+ .+..|.|+|.++|.+
T Consensus 76 ~d~~iG~v~i~l~~l~~~~~------------~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 KDSEIAEVTVQLSKLQNGQE------------TDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCCeEEEEEEEHhHccCCCc------------ccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 89999999999999887542 23478886543 456899999999976
No 13
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=2.1e-18 Score=150.21 Aligned_cols=122 Identities=25% Similarity=0.392 Sum_probs=98.1
Q ss_pred EEEEEEEEecCCCCC--CCCCCcEEEEEEcCC------CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEE
Q 041258 11 LLELNIISAQDLAPV--SRSMRTYAVAWVHPN------RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIF 82 (510)
Q Consensus 11 tLEVTVISAqdLk~v--~GKmDPYVVV~I~pd------~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVy 82 (510)
+|+|+|++|++|+.. .+.+||||++.+.+. .+.+|++.+ ++.||+|||+|.|.+... ...|.|+||
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~-----~~~l~~~v~ 74 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIK-KTLNPKWNEEFFFRVNPR-----EHRLLFEVF 74 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEc-CCCCCcEeeEEEEEEcCC-----CCEEEEEEE
Confidence 489999999999876 478999999999754 256899876 599999999999999763 357999999
Q ss_pred eecCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCC--CCCcceEEEEEEEEe
Q 041258 83 ALHWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRP--SGRPQGILNIGVALL 144 (510)
Q Consensus 83 D~d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrp--SGKpqG~LnLsV~f~ 144 (510)
|.+.+ +|++||.+.|+|.++....... .......||+|+.+ .++..|+|+|.+.|.
T Consensus 75 d~~~~~~~~~iG~~~i~l~~l~~~~~~~------~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 75 DENRLTRDDFLGQVEVPLNNLPTETPGN------ERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred ECCCCCCCCeeEEEEEEHHHCCCcCccc------cccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 99866 6899999999999998754210 01223457888754 578999999999984
No 14
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.78 E-value=3.4e-18 Score=147.21 Aligned_cols=114 Identities=21% Similarity=0.361 Sum_probs=94.3
Q ss_pred EEEEEEEEecCCCCC--CCCCCcEEEEEEcC--CCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecC
Q 041258 11 LLELNIISAQDLAPV--SRSMRTYAVAWVHP--NRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHW 86 (510)
Q Consensus 11 tLEVTVISAqdLk~v--~GKmDPYVVV~I~p--d~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~ 86 (510)
.|+|+|++|++|+.. .+++||||++.+.+ ..+.+|++.++ +.||+|||+|.|.+... ....|.|+|||.+.
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~----~~~~l~v~v~d~d~ 75 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQ----VKNVLELTVMDEDY 75 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcc----cCCEEEEEEEECCC
Confidence 389999999999976 47999999999964 36789999875 89999999999999864 24579999999987
Q ss_pred CCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEEe
Q 041258 87 FRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVALL 144 (510)
Q Consensus 87 ~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f~ 144 (510)
++|++||++.|+|.++..+.. ...+|+|.. +.+|.|+|.+.+.
T Consensus 76 ~~~~~iG~~~~~l~~l~~g~~------------~~~~~~L~~---~~~g~l~~~~~~~ 118 (119)
T cd04036 76 VMDDHLGTVLFDVSKLKLGEK------------VRVTFSLNP---QGKEELEVEFLLE 118 (119)
T ss_pred CCCcccEEEEEEHHHCCCCCc------------EEEEEECCC---CCCceEEEEEEee
Confidence 799999999999999876441 345788843 4689999888764
No 15
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=3.1e-18 Score=149.97 Aligned_cols=119 Identities=20% Similarity=0.206 Sum_probs=97.1
Q ss_pred EEEEEEEEecCCCCCCCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCCCCc
Q 041258 11 LLELNIISAQDLAPVSRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWFRDM 90 (510)
Q Consensus 11 tLEVTVISAqdLk~v~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~gDd 90 (510)
+|.|+|++|++|+.. .+||||++.+. .++.+|+|.++ +.||+|||+|.|.+... ....|.|+|||.+.++|+
T Consensus 1 ~L~V~Vi~a~~L~~~--~~Dpyv~v~l~-~~~~kT~v~~~-t~nP~Wne~F~f~~~~~----~~~~L~~~v~d~d~~~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN--SNDPVVEVKLG-NYKGSTKAIER-TSNPEWNQVFAFSKDRL----QGSTLEVSVWDKDKAKDD 72 (121)
T ss_pred CEEEEEEEecCCCcc--cCCCEEEEEEC-CccccccccCC-CCCCccceEEEEEcCCC----cCCEEEEEEEeCCCCcCc
Confidence 489999999999987 89999999996 47889999864 89999999999998753 357899999999977999
Q ss_pred ceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCC-CCcceEEEEEEEEe
Q 041258 91 HVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPS-GRPQGILNIGVALL 144 (510)
Q Consensus 91 lIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpS-GKpqG~LnLsV~f~ 144 (510)
+||.+.|+|.++...... . ......||+|.... .+..|.|+|.+.|.
T Consensus 73 ~lG~~~i~l~~l~~~~~~-~------~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPP-D------SPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred eeeeEEEEhHhCcCCCCC-C------CCCCcceEEccCCCCCccceEEEEEEEec
Confidence 999999999999764310 0 11123478887643 57899999999985
No 16
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.77 E-value=6.3e-18 Score=147.46 Aligned_cols=118 Identities=16% Similarity=0.326 Sum_probs=97.3
Q ss_pred EEEEEEEecCCCCCCCCCCcEEEEEEcC-CCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-CC
Q 041258 12 LELNIISAQDLAPVSRSMRTYAVAWVHP-NRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF-RD 89 (510)
Q Consensus 12 LEVTVISAqdLk~v~GKmDPYVVV~I~p-d~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~-gD 89 (510)
|.|+|++|++|....+.+||||++.++. ..+.+|+|.++ +.||+|||.|.|.+... ...|.|+|||.+.. +|
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~-----~~~l~~~v~d~~~~~~~ 74 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKN-TSNPFWDEHFLFELSPN-----SKELLFEVYDNGKKSDS 74 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEec-CCCCccCceEEEEeCCC-----CCEEEEEEEECCCCCCC
Confidence 6899999999988558999999999964 35789999864 89999999999999653 45799999999865 69
Q ss_pred cceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCC---CCCcceEEEEEEEEeeCC
Q 041258 90 MHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRP---SGRPQGILNIGVALLDSS 147 (510)
Q Consensus 90 dlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrp---SGKpqG~LnLsV~f~d~s 147 (510)
++||.+.|+|.++..... ...+|+|... +.+..|.|.|.+.|.+.+
T Consensus 75 ~~lG~~~i~l~~l~~~~~------------~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 75 KFLGLAIVPFDELRKNPS------------GRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred ceEEEEEEeHHHhccCCc------------eeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 999999999999986552 1236777643 356899999999998765
No 17
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.76 E-value=1.7e-17 Score=148.69 Aligned_cols=123 Identities=21% Similarity=0.350 Sum_probs=99.0
Q ss_pred ccccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEE
Q 041258 5 ILAPFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIF 82 (510)
Q Consensus 5 ~~~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVy 82 (510)
...+.+.|+|+|++|++|+.. .+.+||||++.++ .++++|+|.++ +.||+|||+|.|.+.+. ....|.|+||
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~-~~~~kT~vi~~-t~nP~Wne~f~f~v~~~----~~~~l~i~V~ 83 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG-SQEHKTKVVSD-TLNPKWNSSMQFFVKDL----EQDVLCITVF 83 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC-CEeeeccccCC-CCCCccCceEEEEecCc----cCCEEEEEEE
Confidence 345689999999999999876 5899999999985 57889999875 89999999999999764 2468999999
Q ss_pred eecCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEE
Q 041258 83 ALHWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVAL 143 (510)
Q Consensus 83 D~d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f 143 (510)
|.+.+ +|++||.+.|+|.+++.... . .......++++ .++..|+|.|.+.|
T Consensus 84 D~d~~~~d~~lG~~~i~l~~l~~~~~-~------~~~~~~~~~~~---~~~~~g~i~l~~~~ 135 (136)
T cd08375 84 DRDFFSPDDFLGRTEIRVADILKETK-E------SKGPITKRLLL---HEVPTGEVVVKLDL 135 (136)
T ss_pred ECCCCCCCCeeEEEEEEHHHhccccc-c------CCCcEEEEecc---ccccceeEEEEEEe
Confidence 99865 68999999999999987432 0 11222234444 57889999999987
No 18
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.76 E-value=1.6e-17 Score=145.56 Aligned_cols=114 Identities=17% Similarity=0.265 Sum_probs=94.6
Q ss_pred EEEEEEEecCCCCC---CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-
Q 041258 12 LELNIISAQDLAPV---SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF- 87 (510)
Q Consensus 12 LEVTVISAqdLk~v---~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~- 87 (510)
|.|+|++|++|+.. .+.+||||.+.+....+.+|+|.++ +.||+|||.|.|.|.+. ...|.|+|||.+.+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~k-t~~P~WnE~F~f~v~~~-----~~~l~~~v~d~~~~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEK-SLCPFFGEDFYFEIPRT-----FRHLSFYIYDRDVLR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEEC-CCCCccCCeEEEEcCCC-----CCEEEEEEEECCCCC
Confidence 78999999999985 2688999999996555789999864 99999999999999864 35899999999865
Q ss_pred CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeC--CCCCcceEEEEEEEE
Q 041258 88 RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRR--PSGRPQGILNIGVAL 143 (510)
Q Consensus 88 gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrr--pSGKpqG~LnLsV~f 143 (510)
+|++||.+.|+|.++..... ...||+|.. +.++.+|.|+|.++|
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~------------~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYG------------KDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCCCC------------cEeeEEEEccCCCCcccEEEEEEEEC
Confidence 79999999999999976442 234777764 456779999999875
No 19
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=1.1e-17 Score=148.47 Aligned_cols=104 Identities=16% Similarity=0.251 Sum_probs=84.4
Q ss_pred EEEEEEEEecCCCCC-CCCCCcEEEEEEcC----C--CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEe
Q 041258 11 LLELNIISAQDLAPV-SRSMRTYAVAWVHP----N--RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFA 83 (510)
Q Consensus 11 tLEVTVISAqdLk~v-~GKmDPYVVV~I~p----d--~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD 83 (510)
.|+|+|++|++|+.. .|.+||||+|.+.+ + ++++|+|. +++.||+|||+|.|.|..... .....|.|+|||
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~-~~tlnPvwNE~f~F~v~~~~~-~~~~~L~~~V~D 78 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSK-NNNWSPKYNETFQFILGNEDD-PESYELHICVKD 78 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEe-cCCCCCccCcEEEEEeeCcCC-CceeEEEEEEEE
Confidence 489999999999876 48999999999843 3 35689988 469999999999999975421 145789999999
Q ss_pred ecCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeC
Q 041258 84 LHWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRR 128 (510)
Q Consensus 84 ~d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrr 128 (510)
++.+ +|++||.+.|||.++..++. ...|++|.+
T Consensus 79 ~d~~~~dd~IG~~~l~l~~~~~~~~------------~~~w~~L~~ 112 (120)
T cd08395 79 YCFARDDRLVGVTVLQLRDIAQAGS------------CACWLPLGR 112 (120)
T ss_pred ecccCCCCEEEEEEEEHHHCcCCCc------------EEEEEECcC
Confidence 9876 58999999999999986552 345888864
No 20
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.75 E-value=4.8e-18 Score=151.44 Aligned_cols=93 Identities=17% Similarity=0.334 Sum_probs=82.3
Q ss_pred ccceEEEEEEEEecCCCCCCCCCCcEEEEEEcCC---CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEe
Q 041258 7 APFQLLELNIISAQDLAPVSRSMRTYAVAWVHPN---RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFA 83 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v~GKmDPYVVV~I~pd---~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD 83 (510)
+..+.|.|+|+.|++|+ ..+.+||||.+++.++ .+++|+|.++ ++||+|||+|.|.|+.+.| ...+|.|.|||
T Consensus 11 ~~~~~L~V~vikA~~L~-~~g~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l--~~~tL~~~V~d 86 (118)
T cd08677 11 KQKAELHVNILEAENIS-VDAGCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEES--LDGTLTLTLRC 86 (118)
T ss_pred CcCCEEEEEEEEecCCC-CCCCCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHh--CCcEEEEEEEe
Confidence 44689999999999999 5677999999999763 5789999875 9999999999999998877 47899999999
Q ss_pred ecCC-CCcceEEEEEeCcccC
Q 041258 84 LHWF-RDMHVGTVRVLVGNLI 103 (510)
Q Consensus 84 ~d~~-gDdlIGeVrVPLsdLl 103 (510)
+|.+ ++++||++.++|.++-
T Consensus 87 ~Drfs~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 87 CDRFSRHSTLGELRLKLADVS 107 (118)
T ss_pred CCCCCCCceEEEEEEcccccc
Confidence 9965 8999999999999873
No 21
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.75 E-value=2.3e-17 Score=140.64 Aligned_cols=114 Identities=16% Similarity=0.272 Sum_probs=94.7
Q ss_pred eEEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecC-
Q 041258 10 QLLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHW- 86 (510)
Q Consensus 10 gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~- 86 (510)
|+|+|+|++|++|+.. .+.+||||++.+.. .+.+|++.++ +.||+|||+|.|.+.+. ...|.|+|||.+.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~~T~~~~~-t~nP~W~e~f~~~~~~~-----~~~l~~~v~d~~~~ 73 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN-ARLQTHTIYK-TLNPEWNKIFTFPIKDI-----HDVLEVTVYDEDKD 73 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-EeeecceecC-CcCCccCcEEEEEecCc-----CCEEEEEEEECCCC
Confidence 5899999999999876 47899999999964 5679999865 89999999999999752 4689999999986
Q ss_pred CCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCC--CCCcceEEEEEEEEe
Q 041258 87 FRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRP--SGRPQGILNIGVALL 144 (510)
Q Consensus 87 ~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrp--SGKpqG~LnLsV~f~ 144 (510)
.++++||.+.++|.++..+. ..||+|..+ .++.+|.|.|.+.|.
T Consensus 74 ~~~~~iG~~~~~l~~~~~~~--------------~~~~~l~~~~~~~~~~G~i~l~~~~~ 119 (119)
T cd08377 74 KKPEFLGKVAIPLLSIKNGE--------------RKWYALKDKKLRTRAKGSILLEMDVI 119 (119)
T ss_pred CCCceeeEEEEEHHHCCCCC--------------ceEEECcccCCCCceeeEEEEEEEeC
Confidence 47899999999999986432 136888654 456899999999873
No 22
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.75 E-value=2e-17 Score=140.69 Aligned_cols=113 Identities=22% Similarity=0.311 Sum_probs=93.8
Q ss_pred eEEEEEEEEecCCCCCC--------CCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEE
Q 041258 10 QLLELNIISAQDLAPVS--------RSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEI 81 (510)
Q Consensus 10 gtLEVTVISAqdLk~v~--------GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEV 81 (510)
|.|+|+|++|++|+... +.+||||++.+.+ ++.+|++.++ +.||+|||.|.|.+.+. ....|.|+|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~-t~~P~W~e~f~~~v~~~----~~~~l~i~v 74 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKE-NLNPKWNEVYEAVVDEV----PGQELEIEL 74 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-EeEEccccCC-CCCCcccceEEEEeCCC----CCCEEEEEE
Confidence 57999999999998752 5799999999965 7889999865 99999999999999764 357899999
Q ss_pred EeecCCCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEE
Q 041258 82 FALHWFRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVAL 143 (510)
Q Consensus 82 yD~d~~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f 143 (510)
||.+.++|++||.+.|+|.++...+. ...||+|.. ..+|+|+|.++|
T Consensus 75 ~d~~~~~~~~iG~~~i~l~~l~~~~~------------~~~w~~L~~---~~~G~~~~~~~~ 121 (121)
T cd08391 75 FDEDPDKDDFLGRLSIDLGSVEKKGF------------IDEWLPLED---VKSGRLHLKLEW 121 (121)
T ss_pred EecCCCCCCcEEEEEEEHHHhcccCc------------cceEEECcC---CCCceEEEEEeC
Confidence 99987799999999999999986441 124788753 378999998865
No 23
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.74 E-value=2.8e-17 Score=143.41 Aligned_cols=113 Identities=24% Similarity=0.398 Sum_probs=92.1
Q ss_pred EEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCCC
Q 041258 11 LLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWFR 88 (510)
Q Consensus 11 tLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~g 88 (510)
.|+|+|++|++|+.. ++.+||||++++++.++++|+|++ ++.||+|||+|.|.+.. ...|.|+|||++.++
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~-~t~nP~Wne~f~~~~~~------~~~l~i~V~d~~~~~ 73 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAK-KTLDPKWNEHFDLTVGP------SSIITIQVFDQKKFK 73 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEc-CCCCCcccceEEEEeCC------CCEEEEEEEECCCCC
Confidence 389999999999876 489999999999767788999986 58999999999999975 368999999998663
Q ss_pred ---CcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCC----CCCcceEEEEEE
Q 041258 89 ---DMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRP----SGRPQGILNIGV 141 (510)
Q Consensus 89 ---DdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrp----SGKpqG~LnLsV 141 (510)
|++||.+.|+|.+++.... . ...||+|+.. .++..|.|.+.+
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~---------~--~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKD---------T--GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeEEEEEHHHccccCC---------C--ccceeEeecCCCCCCceEeeEEEEEe
Confidence 5799999999999986542 1 1226777542 467789888765
No 24
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.74 E-value=4.5e-17 Score=138.87 Aligned_cols=112 Identities=18% Similarity=0.337 Sum_probs=93.5
Q ss_pred EEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-
Q 041258 11 LLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF- 87 (510)
Q Consensus 11 tLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~- 87 (510)
.|+|+|++|++|+.. .+.+||||++.+. .++.+|++.++ +.||+|||+|.|.+.+. ....|.|+|||.+.+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~-~~~~kT~v~~~-t~nP~Wne~f~f~~~~~----~~~~l~v~v~d~~~~~ 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG-NEKYKSKVCSK-TLNPQWLEQFDLHLFDD----QSQILEIEVWDKDTGK 74 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC-CEeEecccccC-CCCCceeEEEEEEecCC----CCCEEEEEEEECCCCC
Confidence 379999999999876 4889999999995 57889999865 99999999999999764 257899999999865
Q ss_pred CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEEe
Q 041258 88 RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVALL 144 (510)
Q Consensus 88 gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f~ 144 (510)
+|++||.+.++|.++..+. ....||+|.. .+|.|.|.+.+.
T Consensus 75 ~~~~iG~~~~~l~~l~~~~------------~~~~w~~L~~----~~G~~~~~~~~~ 115 (116)
T cd08376 75 KDEFIGRCEIDLSALPREQ------------THSLELELED----GEGSLLLLLTLT 115 (116)
T ss_pred CCCeEEEEEEeHHHCCCCC------------ceEEEEEccC----CCcEEEEEEEec
Confidence 7999999999999987643 2456888853 269999888764
No 25
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=6.4e-17 Score=140.78 Aligned_cols=116 Identities=18% Similarity=0.251 Sum_probs=97.5
Q ss_pred EEEecCCCCCCCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-CCcceEE
Q 041258 16 IISAQDLAPVSRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF-RDMHVGT 94 (510)
Q Consensus 16 VISAqdLk~v~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~-gDdlIGe 94 (510)
|++|++|+...+++||||++.+. ..+++|++.++ +.||+|||+|.|.+..... ....|.|+|||++.+ +|++||+
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~-~~~~kT~v~~~-~~nP~Wne~f~f~~~~~~~--~~~~l~~~v~d~~~~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFR-GVKKKTRVLEN-ELNPVWNETFEWPLAGSPD--PDESLEIVVKDYEKVGRNRLIGS 77 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEEC-CEeeecceeCC-CcCCcccceEEEEeCCCcC--CCCEEEEEEEECCCCCCCceEEE
Confidence 79999999966899999999996 46789999864 7999999999999976532 467899999999865 7899999
Q ss_pred EEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCC-cceEEEEEEEEeeCC
Q 041258 95 VRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGR-PQGILNIGVALLDSS 147 (510)
Q Consensus 95 VrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGK-pqG~LnLsV~f~d~s 147 (510)
+.++|.++..+. ....+++|...+++ ..|.|++.++|.+..
T Consensus 78 ~~~~l~~l~~~~------------~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 78 ATVSLQDLVSEG------------LLEVTEPLLDSNGRPTGATISLEVSYQPPD 119 (127)
T ss_pred EEEEhhHcccCC------------ceEEEEeCcCCCCCcccEEEEEEEEEeCCC
Confidence 999999998644 24568999866666 489999999998865
No 26
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.73 E-value=3.5e-17 Score=141.44 Aligned_cols=113 Identities=22% Similarity=0.361 Sum_probs=92.7
Q ss_pred EEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-C
Q 041258 12 LELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF-R 88 (510)
Q Consensus 12 LEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~-g 88 (510)
|+|+|++|++|... .+.+||||.+.+. ..+.+|++.++ +.||+|||+|.|.+.... ...|.|+|||++.+ .
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~-~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~----~~~l~~~v~d~~~~~~ 75 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYN-GQTLETSVVKK-SCYPRWNEVFEFELMEGA----DSPLSVEVWDWDLVSK 75 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEEC-CEEEeceeecC-CCCCccCcEEEEEcCCCC----CCEEEEEEEECCCCCC
Confidence 89999999999876 4789999999985 46789999865 899999999999998752 46899999999865 6
Q ss_pred CcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeC------CCCCcceEEEEEEE
Q 041258 89 DMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRR------PSGRPQGILNIGVA 142 (510)
Q Consensus 89 DdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrr------pSGKpqG~LnLsV~ 142 (510)
+++||.+.++|.++..... ...||.|.. .+++..|.|.|.|+
T Consensus 76 ~~~iG~~~~~l~~l~~~~~------------~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 76 NDFLGKVVFSIQTLQQAKQ------------EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred CcEeEEEEEEHHHcccCCC------------CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 8999999999999976442 123677753 36788999999874
No 27
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.73 E-value=6.7e-17 Score=141.77 Aligned_cols=114 Identities=23% Similarity=0.352 Sum_probs=93.2
Q ss_pred eEEEEEEEEecCCCCCC------------CCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceE
Q 041258 10 QLLELNIISAQDLAPVS------------RSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAV 77 (510)
Q Consensus 10 gtLEVTVISAqdLk~v~------------GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L 77 (510)
+.|+|+|++|++|+... +.+||||++++++.+..+|++.++ +.||+|||+|.|.|.+ ...|
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~------~~~l 76 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK-TNSPVWNEEFTTEVHN------GRNL 76 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCC-CCCCCcceeEEEEcCC------CCEE
Confidence 78999999999998753 468999999997655679999764 9999999999999974 3689
Q ss_pred EEEEEeecCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEEee
Q 041258 78 MIEIFALHWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVALLD 145 (510)
Q Consensus 78 ~VEVyD~d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f~d 145 (510)
.|+|||.+.+ .|++||.+.|+|.++..... .....||+|. ++|.|+|.+.+..
T Consensus 77 ~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~----------~~~~~w~~L~-----~~G~l~l~~~~~~ 130 (132)
T cd04014 77 ELTVFHDAAIGPDDFVANCTISFEDLIQRGS----------GSFDLWVDLE-----PQGKLHVKIELKG 130 (132)
T ss_pred EEEEEeCCCCCCCceEEEEEEEhHHhcccCC----------CcccEEEEcc-----CCcEEEEEEEEec
Confidence 9999998755 68999999999999987410 0123477774 7899999999865
No 28
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.72 E-value=8.6e-17 Score=139.93 Aligned_cols=114 Identities=17% Similarity=0.253 Sum_probs=92.3
Q ss_pred EEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-C
Q 041258 12 LELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF-R 88 (510)
Q Consensus 12 LEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~-g 88 (510)
|.|+|++|++|++. .+++||||++.+++....+|++.++ +.||+|||.|.|.+.+. ...|.|+|||.+.+ .
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~~-----~~~l~v~v~d~~~~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWK-TLNPFWGEEYTVHLPPG-----FHTVSFYVLDEDTLSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcC-CCCCcccceEEEeeCCC-----CCEEEEEEEECCCCCC
Confidence 89999999999986 4899999999997544579999875 89999999999999763 46899999999865 7
Q ss_pred CcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEee--CCCCCcceEEEEEEE
Q 041258 89 DMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVR--RPSGRPQGILNIGVA 142 (510)
Q Consensus 89 DdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLr--rpSGKpqG~LnLsV~ 142 (510)
|++||.+.+++..+..... .... |++|. .+.++..|.|+|.+.
T Consensus 76 d~~iG~~~~~~~~~~~~~~---------~~~~--W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAHPR---------GIDG--WMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccCCC---------CCCc--EEECeeeCCCCccccEEEEEEE
Confidence 8999999999988864321 1123 66664 356678999999875
No 29
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.72 E-value=4.5e-17 Score=143.38 Aligned_cols=97 Identities=18% Similarity=0.368 Sum_probs=82.4
Q ss_pred ccceEEEEEEEEecCCCCC---CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEE
Q 041258 7 APFQLLELNIISAQDLAPV---SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMI 79 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v---~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~V 79 (510)
+..+.|.|+|++|++|... .+.+||||++.+.++ .+++|+|.+ ++.||+|||+|.|.|..+.+ ....|.|
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~l--~~~~L~~ 88 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR-NTTNPVYNETLKYSISHSQL--ETRTLQL 88 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeee-CCCCCcccceEEEECCHHHh--CCCEEEE
Confidence 4568899999999999875 378999999999764 367999976 48999999999999987655 3568999
Q ss_pred EEEeecCC-CCcceEEEEEeCcccCCCC
Q 041258 80 EIFALHWF-RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 80 EVyD~d~~-gDdlIGeVrVPLsdLl~~~ 106 (510)
+|||++.+ ++++||++.|+|.++....
T Consensus 89 ~V~d~~~~~~~~~lG~~~i~l~~~~~~~ 116 (125)
T cd04029 89 SVWHYDRFGRNTFLGEVEIPLDSWNFDS 116 (125)
T ss_pred EEEECCCCCCCcEEEEEEEeCCcccccC
Confidence 99999865 7899999999999997644
No 30
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.72 E-value=4e-17 Score=143.14 Aligned_cols=95 Identities=18% Similarity=0.294 Sum_probs=80.8
Q ss_pred ceEEEEEEEEecCCCCC-CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEe-cCCCCCCCCceEEEEEE
Q 041258 9 FQLLELNIISAQDLAPV-SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRV-DEDFLHNDTSAVMIEIF 82 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v-~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V-~e~~L~~~~s~L~VEVy 82 (510)
.+.|.|+|++|++|... .+.+||||++++.++ .+++|+|+++ +.||+|||+|.|.+ +...+ ....|.|+||
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l--~~~~L~~~V~ 88 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDL--QQRVLQVSVW 88 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHh--CCCEEEEEEE
Confidence 47899999999999876 578999999999864 4789999875 89999999999997 54444 3679999999
Q ss_pred eecCC-CCcceEEEEEeCcccCCCC
Q 041258 83 ALHWF-RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 83 D~d~~-gDdlIGeVrVPLsdLl~~~ 106 (510)
|++.+ ++++||++.|+|.++....
T Consensus 89 d~d~~~~~~~lG~~~i~l~~l~~~~ 113 (122)
T cd08381 89 SHDSLVENEFLGGVCIPLKKLDLSQ 113 (122)
T ss_pred eCCCCcCCcEEEEEEEeccccccCC
Confidence 99865 6899999999999987543
No 31
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.71 E-value=7.9e-17 Score=139.40 Aligned_cols=95 Identities=22% Similarity=0.378 Sum_probs=81.5
Q ss_pred eEEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC
Q 041258 10 QLLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF 87 (510)
Q Consensus 10 gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~ 87 (510)
|.|+|+|++|++|++. .+++||||++++. .++++|++.++++.||+|||+|.|.+....+. ....|.|+|||.+.+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~-~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~-~~~~l~v~V~d~~~~ 78 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR-TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWG-GDTKLILRIMDKDNF 78 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC-CEeeeeeEcCCCCCCCcccceEEEEecCcccC-CCCEEEEEEEECccC
Confidence 5799999999999986 4799999999996 46778988876689999999999999876321 256899999999865
Q ss_pred -CCcceEEEEEeCcccCCCC
Q 041258 88 -RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 88 -gDdlIGeVrVPLsdLl~~~ 106 (510)
+|++||.+.|+|.+++.++
T Consensus 79 ~~d~~iG~~~i~l~~l~~~~ 98 (124)
T cd04049 79 SDDDFIGEATIHLKGLFEEG 98 (124)
T ss_pred CCCCeEEEEEEEhHHhhhCC
Confidence 7899999999999998755
No 32
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.71 E-value=1.5e-16 Score=136.89 Aligned_cols=119 Identities=15% Similarity=0.262 Sum_probs=94.8
Q ss_pred eEEEEEEEEecCCCCC----CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeec
Q 041258 10 QLLELNIISAQDLAPV----SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALH 85 (510)
Q Consensus 10 gtLEVTVISAqdLk~v----~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d 85 (510)
|.|.|+|++|++|... .+.+||||++.+. ..+.+|++.++ +.||+|||.|.|.+.+. ....|.|+|||.+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~-~~~~kT~~~~~-t~~P~Wne~f~~~~~~~----~~~~l~i~v~d~~ 74 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG-AQRFKTQTIPN-TLNPKWNYWCEFPIFSA----QNQLLKLILWDKD 74 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC-CEEEecceecC-CcCCccCCcEEEEecCC----CCCEEEEEEEECC
Confidence 5799999999999864 4689999999985 57889999865 89999999999999863 2569999999998
Q ss_pred CC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCC----CCCcceEEEEEEEE
Q 041258 86 WF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRP----SGRPQGILNIGVAL 143 (510)
Q Consensus 86 ~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrp----SGKpqG~LnLsV~f 143 (510)
.+ +|++||.+.|+|.++...+. .+....||+|... ..+.+|.|+|.+.+
T Consensus 75 ~~~~~~~lG~~~i~l~~~~~~~~---------~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 75 RFAGKDYLGEFDIALEEVFADGK---------TGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCCcceEEEEEHHHhhcccc---------cCccceeEEccCcccCccccccceEEEEEEC
Confidence 66 78999999999999985321 0112346777543 24579999999864
No 33
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=1.4e-16 Score=135.39 Aligned_cols=111 Identities=19% Similarity=0.354 Sum_probs=92.6
Q ss_pred EEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-C
Q 041258 12 LELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF-R 88 (510)
Q Consensus 12 LEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~-g 88 (510)
|+|+|++|++|+.. .+.+||||++.+.+....+|++.. ++.||+|||+|.|.+.+. ....|.|+|||.+.+ +
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~-~~~~P~Wne~f~~~~~~~----~~~~l~~~v~d~~~~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIK-KTLNPVWNESFEVPVPSR----VRAVLKVEVYDWDRGGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceec-CCCCCcccccEEEEeccC----CCCEEEEEEEeCCCCCC
Confidence 68999999999986 478999999999776668999975 599999999999999864 256899999999865 7
Q ss_pred CcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEE
Q 041258 89 DMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNI 139 (510)
Q Consensus 89 DdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnL 139 (510)
+++||++.++|.++..+.. ...+++|...++...|.|-+
T Consensus 76 ~~~iG~~~~~l~~l~~~~~------------~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 76 DDLLGSAYIDLSDLEPEET------------TELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred CCceEEEEEEHHHcCCCCc------------EEEEEECcCCCCccCceEEc
Confidence 8999999999999976431 34688887667778887754
No 34
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.70 E-value=9.4e-17 Score=142.71 Aligned_cols=94 Identities=21% Similarity=0.380 Sum_probs=81.3
Q ss_pred cceEEEEEEEEecCCCCC--C-CCCCcEEEEEEcCCC----eeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEE
Q 041258 8 PFQLLELNIISAQDLAPV--S-RSMRTYAVAWVHPNR----KLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIE 80 (510)
Q Consensus 8 P~gtLEVTVISAqdLk~v--~-GKmDPYVVV~I~pd~----K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VE 80 (510)
..+.|.|+|++|++|... . +.+||||.+.+.|+. +.+|+|.+ ++.||+|||+|.|.|..+.|. ...|.|.
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~-~t~nPvfNE~F~f~v~~~~l~--~~~L~v~ 89 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK-GTVNPVFNETLKYVVEADLLS--SRQLQVS 89 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeeccccc-CCCCCccceEEEEEcCHHHhC--CcEEEEE
Confidence 357899999999999876 2 789999999998753 77999986 499999999999999876553 6799999
Q ss_pred EEeecCC-CCcceEEEEEeCcccCC
Q 041258 81 IFALHWF-RDMHVGTVRVLVGNLIP 104 (510)
Q Consensus 81 VyD~d~~-gDdlIGeVrVPLsdLl~ 104 (510)
|||.+.+ ++++||++.|+|.++..
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~ 114 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDF 114 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCccc
Confidence 9999865 78999999999999954
No 35
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.70 E-value=1.2e-16 Score=146.29 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=77.6
Q ss_pred EEEEEEEEecCCCCCCCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecC-------------CCCCCC
Q 041258 11 LLELNIISAQDLAPVSRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDE-------------DFLHND 73 (510)
Q Consensus 11 tLEVTVISAqdLk~v~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e-------------~~L~~~ 73 (510)
.|.|+|++|++|....+..||||+|.+.+. .+.+|+|.+ ++.||+|||+|.|.+.. ..+ +
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~-~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~--~ 77 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKK-KTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDA--E 77 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEe-CCCCCccceEEEEEEecccccccccccCCcccc--c
Confidence 489999999999986789999999999864 567999986 49999999999999951 111 2
Q ss_pred CceEEEEEEeecCC-CCcceEEEEEeCcccCCC
Q 041258 74 TSAVMIEIFALHWF-RDMHVGTVRVLVGNLIPP 105 (510)
Q Consensus 74 ~s~L~VEVyD~d~~-gDdlIGeVrVPLsdLl~~ 105 (510)
...|.|+|||.+.+ +|++||.+.|||.++..+
T Consensus 78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~ 110 (148)
T cd04010 78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ 110 (148)
T ss_pred EEEEEEEEEcCCCCCCCceeEEEEEeccccccc
Confidence 46899999999865 789999999999998765
No 36
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.70 E-value=6.8e-17 Score=151.86 Aligned_cols=93 Identities=25% Similarity=0.397 Sum_probs=83.6
Q ss_pred ccceEEEEEEEEecCCCCC-C-CCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEee
Q 041258 7 APFQLLELNIISAQDLAPV-S-RSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFAL 84 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v-~-GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~ 84 (510)
-+.|.|+|+|+.|.+|... + +++||||++.++ .++++|+|.. ++.||+|||.|.|.|.+. ...|.++|||+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg-~q~lkT~~v~-~n~NPeWNe~ltf~v~d~-----~~~lkv~VyD~ 75 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG-NQKLKTRVVY-KNLNPEWNEELTFTVKDP-----NTPLKVTVYDK 75 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEEC-Ceeeeeeeec-CCCCCcccceEEEEecCC-----CceEEEEEEeC
Confidence 3579999999999999875 4 899999999995 6899999875 599999999999999985 67999999999
Q ss_pred cCC-CCcceEEEEEeCcccCCCC
Q 041258 85 HWF-RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 85 d~~-gDdlIGeVrVPLsdLl~~~ 106 (510)
|.| .|++||+|.|||..++...
T Consensus 76 D~fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 76 DTFSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred CCCCcccccceeeeccHHHHHHh
Confidence 966 8999999999999998765
No 37
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.70 E-value=1.5e-16 Score=137.64 Aligned_cols=98 Identities=20% Similarity=0.409 Sum_probs=83.6
Q ss_pred cccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcC--CCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEE
Q 041258 6 LAPFQLLELNIISAQDLAPV--SRSMRTYAVAWVHP--NRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEI 81 (510)
Q Consensus 6 ~~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~p--d~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEV 81 (510)
.++.+.|.|+|++|++|... .+.+||||.+.+.+ ..+.+|++.++ +.||+|||+|.|.+....+ ....|.|+|
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l--~~~~l~i~V 88 (124)
T cd08387 12 DKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQEL--PKRTLEVLL 88 (124)
T ss_pred CCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHh--CCCEEEEEE
Confidence 45678999999999999876 48899999999964 35789999864 9999999999999987654 256899999
Q ss_pred EeecCC-CCcceEEEEEeCcccCCCC
Q 041258 82 FALHWF-RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 82 yD~d~~-gDdlIGeVrVPLsdLl~~~ 106 (510)
||++.+ +|++||.+.|+|.++...+
T Consensus 89 ~d~~~~~~~~~iG~~~i~l~~~~~~~ 114 (124)
T cd08387 89 YDFDQFSRDECIGVVELPLAEVDLSE 114 (124)
T ss_pred EECCCCCCCceeEEEEEecccccCCC
Confidence 999866 7999999999999997644
No 38
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.69 E-value=1.3e-16 Score=140.03 Aligned_cols=95 Identities=23% Similarity=0.410 Sum_probs=81.0
Q ss_pred cceEEEEEEEEecCCCCCC---CCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEE
Q 041258 8 PFQLLELNIISAQDLAPVS---RSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIE 80 (510)
Q Consensus 8 P~gtLEVTVISAqdLk~v~---GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VE 80 (510)
..+.|+|+|++|++|+... +.+||||.+.+.++ .+++|+|+++ +.||+|||+|.|.|....+ ....|.|+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l--~~~~L~~~ 89 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREEL--PTRVLNLS 89 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHh--CCCEEEEE
Confidence 3578999999999999873 68999999999764 3579999864 8999999999999987655 35789999
Q ss_pred EEeecCC-CCcceEEEEEeCcccCCC
Q 041258 81 IFALHWF-RDMHVGTVRVLVGNLIPP 105 (510)
Q Consensus 81 VyD~d~~-gDdlIGeVrVPLsdLl~~ 105 (510)
|||++.+ ++++||++.|+|.++-..
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~ 115 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWS 115 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccC
Confidence 9999865 789999999999998543
No 39
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.68 E-value=1.7e-16 Score=137.10 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=79.6
Q ss_pred eEEEEEEEEecCCCCCC------CCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEe
Q 041258 10 QLLELNIISAQDLAPVS------RSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFA 83 (510)
Q Consensus 10 gtLEVTVISAqdLk~v~------GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD 83 (510)
|.|.|+|++|++|++.. +.+||||++.+. .++++|+|+++ +.||+|||.|.|.|.+.. ....|.|+|||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-~~~~kT~v~~~-t~nPvWne~f~f~v~~~~---~~~~L~~~V~D 75 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-RRVFRTSWRRH-TLNPVFNERLAFEVYPHE---KNFDIQFKVLD 75 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-CEeEeeeeecC-CCCCcccceEEEEEeCcc---CCCEEEEEEEE
Confidence 58999999999999862 358999999995 57889999975 899999999999987643 24689999999
Q ss_pred ecCC-CCcceEEEEEeCcccCCCCC
Q 041258 84 LHWF-RDMHVGTVRVLVGNLIPPPT 107 (510)
Q Consensus 84 ~d~~-gDdlIGeVrVPLsdLl~~~~ 107 (510)
++.+ .|++||++.|+|.+|+.+..
T Consensus 76 ~d~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 76 KDKFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCCCCCCcceEEEEEEHHHHHhhCC
Confidence 9865 78999999999999987663
No 40
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.68 E-value=2.5e-16 Score=135.91 Aligned_cols=97 Identities=20% Similarity=0.299 Sum_probs=81.9
Q ss_pred ccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEE
Q 041258 7 APFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIE 80 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VE 80 (510)
+..+.|+|+|++|++|+.. .+..||||++.+.++ .+++|+|.++ +.||+|||+|.|.+....+ ....|.|+
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l--~~~~l~i~ 89 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEEL--KRRTLDVA 89 (127)
T ss_pred CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHh--cCCEEEEE
Confidence 4468899999999999987 388999999999753 5789999875 8999999999999976544 25789999
Q ss_pred EEeecCC---CCcceEEEEEeCcccCCCC
Q 041258 81 IFALHWF---RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 81 VyD~d~~---gDdlIGeVrVPLsdLl~~~ 106 (510)
|||.+.+ +|++||++.|+|.++..+.
T Consensus 90 v~~~~~~~~~~~~~iG~~~i~l~~l~~~~ 118 (127)
T cd04030 90 VKNSKSFLSREKKLLGQVLIDLSDLDLSK 118 (127)
T ss_pred EEECCcccCCCCceEEEEEEecccccccC
Confidence 9999853 7899999999999986543
No 41
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.68 E-value=2.6e-16 Score=133.35 Aligned_cols=88 Identities=23% Similarity=0.356 Sum_probs=77.0
Q ss_pred EEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCCC
Q 041258 11 LLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWFR 88 (510)
Q Consensus 11 tLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~g 88 (510)
.|.|+|++|++|+.. .+.+||||++.+++ ++.+|++.+ ++.||+|||.|.|.|.... ...|.|+|+|.+.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~v~~-~t~nP~Wne~f~f~v~~~~----~~~l~v~v~d~~~-- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK-TTQKSKVKE-RTNNPVWEEGFTFLVRNPE----NQELEIEVKDDKT-- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC-EEEeCcccc-CCCCCcccceEEEEeCCCC----CCEEEEEEEECCC--
Confidence 389999999999986 48899999999975 788999986 5899999999999998742 4689999999877
Q ss_pred CcceEEEEEeCcccCCCC
Q 041258 89 DMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 89 DdlIGeVrVPLsdLl~~~ 106 (510)
|++||.+.|+|.++....
T Consensus 73 ~~~iG~~~i~l~~l~~~~ 90 (105)
T cd04050 73 GKSLGSLTLPLSELLKEP 90 (105)
T ss_pred CCccEEEEEEHHHhhccc
Confidence 899999999999998643
No 42
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.68 E-value=3e-16 Score=133.91 Aligned_cols=108 Identities=20% Similarity=0.273 Sum_probs=85.1
Q ss_pred ceEEEEEEEEecCCCCCCCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-
Q 041258 9 FQLLELNIISAQDLAPVSRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF- 87 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~- 87 (510)
...|+|+|++|++|. .+..||||+++++ +++++|++.+ ++.||+|||+|.|.+.....+-....|.|+|||.+.+
T Consensus 3 ~~~l~V~v~~a~~L~--~~~~dpyv~v~~~-~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV--GGNIDPVVKVEVG-GQKKYTSVKK-GTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred cEEEEEEEEEcccCC--CCCCCCEEEEEEC-CEeeeeeEEe-ccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 457999999999999 6889999999997 4678999875 5899999999999975432111246899999999865
Q ss_pred CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCC
Q 041258 88 RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRP 129 (510)
Q Consensus 88 gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrp 129 (510)
+|++||++.|+|.++..+.. ...-..||+|..|
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~---------~~~~~~w~~L~~~ 111 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPD---------HAFLRKWLLLTDP 111 (111)
T ss_pred cCCccEEEEECCccccCCCC---------CcceEEEEEeeCc
Confidence 68999999999999987542 1123357888653
No 43
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.68 E-value=2.8e-16 Score=135.73 Aligned_cols=95 Identities=24% Similarity=0.438 Sum_probs=80.6
Q ss_pred cceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC--CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEe
Q 041258 8 PFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN--RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFA 83 (510)
Q Consensus 8 P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd--~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD 83 (510)
..+.|+|+|++|++|+.. .+.+||||++.+.++ .+.+|++.+ ++.||+|||+|.|.+....+ ....|.|+|||
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l--~~~~l~~~V~d 90 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFTFKVPYSEL--GNKTLVFSVYD 90 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCc-CCCCCceeeeEEEeCCHHHh--CCCEEEEEEEe
Confidence 457999999999999876 478999999999765 467999986 48999999999999976543 25689999999
Q ss_pred ecCC-CCcceEEEEEeCcccCCC
Q 041258 84 LHWF-RDMHVGTVRVLVGNLIPP 105 (510)
Q Consensus 84 ~d~~-gDdlIGeVrVPLsdLl~~ 105 (510)
.+.+ +|++||++.|+|.++..+
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~ 113 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLG 113 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCC
Confidence 9865 789999999999998653
No 44
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.68 E-value=7.6e-16 Score=133.07 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=92.1
Q ss_pred EEEEEEEEecCCCCC--CCCCCcEEEEEEcCC--CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecC
Q 041258 11 LLELNIISAQDLAPV--SRSMRTYAVAWVHPN--RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHW 86 (510)
Q Consensus 11 tLEVTVISAqdLk~v--~GKmDPYVVV~I~pd--~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~ 86 (510)
.|+|+|++|++|+.. .+.+||||++++.+. ...+|++.++ +.||+|||+|.|.+... ....|.|+|||.+.
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~----~~~~L~i~v~d~d~ 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAG----EPLWISATVWDRSF 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCC----CCCEEEEEEEECCC
Confidence 689999999999976 488999999998643 3579999864 89999999999999874 24689999999986
Q ss_pred C-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEEee
Q 041258 87 F-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVALLD 145 (510)
Q Consensus 87 ~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f~d 145 (510)
+ .+++||++.|+|.++..... ......|++|. ++|.|+|.+.+..
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~---------~~~~~~w~~l~-----~~g~i~l~~~~~~ 122 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDD---------GLPREIWLDLD-----TQGRLLLRVSMEG 122 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCC---------CCCceEEEEcC-----CCCeEEEEEEEee
Confidence 6 78999999999987643220 01234578874 3788888888764
No 45
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.68 E-value=7.7e-16 Score=135.13 Aligned_cols=118 Identities=18% Similarity=0.266 Sum_probs=94.2
Q ss_pred eEEEEEEEEecCCCCC-CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-
Q 041258 10 QLLELNIISAQDLAPV-SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF- 87 (510)
Q Consensus 10 gtLEVTVISAqdLk~v-~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~- 87 (510)
..|+|+|++|+.+... .+++||||++.+.+..+.+|++.+ ++.||+|||.|.|.+.+ ...|.|+|||++.+
T Consensus 2 ~~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~-~t~~P~Wne~f~~~~~~------~~~l~~~V~d~~~~~ 74 (125)
T cd04021 2 SQLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSK-KTSNPKWNEHFTVLVTP------QSTLEFKVWSHHTLK 74 (125)
T ss_pred ceEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeC-CCCCCccccEEEEEeCC------CCEEEEEEEeCCCCC
Confidence 4699999999944443 478999999999754488999986 58999999999999865 35899999999865
Q ss_pred CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCC---CCcceEEEEEE
Q 041258 88 RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPS---GRPQGILNIGV 141 (510)
Q Consensus 88 gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpS---GKpqG~LnLsV 141 (510)
.|++||++.|+|.+++.... . .....+.+++|.+++ ++..|.|.+.+
T Consensus 75 ~~~~iG~~~i~l~~l~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEASLDLSDILKNHN-G------KLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEEEEHHHhHhhcC-C------CccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 78999999999999986542 0 122345689998754 57899998875
No 46
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.68 E-value=4.2e-16 Score=137.74 Aligned_cols=96 Identities=22% Similarity=0.363 Sum_probs=79.5
Q ss_pred ccceEEEEEEEEecCCCCC--C-CCCCcEEEEEEcCC--CeeEeeecCCCCCCceeceEEEE-EecCCCCCCCCceEEEE
Q 041258 7 APFQLLELNIISAQDLAPV--S-RSMRTYAVAWVHPN--RKLSTRVDAHGRNNPTWNDKFVF-RVDEDFLHNDTSAVMIE 80 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v--~-GKmDPYVVV~I~pd--~K~rTrVdr~Gg~NPvWNEkF~F-~V~e~~L~~~~s~L~VE 80 (510)
+....|+|+|++|++|+.. . +.+||||++.+.+. ++.+|+|.++ +.||+|||+|.| .++...+ ....|.|+
T Consensus 13 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~--~~~~L~~~ 89 (128)
T cd08388 13 SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQL--QDLSLHFA 89 (128)
T ss_pred CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHh--CCCEEEEE
Confidence 3467999999999999975 3 78999999999754 4679999865 899999999999 4665433 24679999
Q ss_pred EEeecCC-CCcceEEEEEeCcccCCC
Q 041258 81 IFALHWF-RDMHVGTVRVLVGNLIPP 105 (510)
Q Consensus 81 VyD~d~~-gDdlIGeVrVPLsdLl~~ 105 (510)
|||++.+ +|++||++.|+|.++-..
T Consensus 90 V~d~d~~~~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 90 VLSFDRYSRDDVIGEVVCPLAGADLL 115 (128)
T ss_pred EEEcCCCCCCceeEEEEEeccccCCC
Confidence 9999855 799999999999998654
No 47
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.68 E-value=2.1e-16 Score=135.43 Aligned_cols=94 Identities=23% Similarity=0.316 Sum_probs=79.1
Q ss_pred eEEEEEEEEecCCCCC--C-CCCCcEEEEEEcCC--CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEee
Q 041258 10 QLLELNIISAQDLAPV--S-RSMRTYAVAWVHPN--RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFAL 84 (510)
Q Consensus 10 gtLEVTVISAqdLk~v--~-GKmDPYVVV~I~pd--~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~ 84 (510)
|.|+|+|++|++|+.. . +++||||++.+.+. ...+|++.++ +.||+|||.|.|.+....+. ....|.|+|||+
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~-~~~~l~~~V~d~ 78 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVK-AGERLSCRLWDS 78 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhcc-CCCEEEEEEEeC
Confidence 5899999999999876 4 78999999999643 4679999875 89999999999988754321 346899999999
Q ss_pred cCC-CCcceEEEEEeCcccCCC
Q 041258 85 HWF-RDMHVGTVRVLVGNLIPP 105 (510)
Q Consensus 85 d~~-gDdlIGeVrVPLsdLl~~ 105 (510)
+.+ +|++||++.|+|.+|+..
T Consensus 79 d~~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 79 DRFTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCCCCcceEEEEEHHHHhcC
Confidence 866 789999999999999843
No 48
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.68 E-value=9.7e-16 Score=131.60 Aligned_cols=115 Identities=20% Similarity=0.307 Sum_probs=93.2
Q ss_pred eEEEEEEEEecCCCCCC----CCCCcEEEEEEcC-----CCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEE
Q 041258 10 QLLELNIISAQDLAPVS----RSMRTYAVAWVHP-----NRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIE 80 (510)
Q Consensus 10 gtLEVTVISAqdLk~v~----GKmDPYVVV~I~p-----d~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VE 80 (510)
-.|+|+|++|++|+... +..||||++++.+ ..+.+|+++.+.+.||+|||+|.|.+... +...|.|+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~----~~~~l~~~ 77 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP----ELAFLRFV 77 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC----CeEEEEEE
Confidence 36999999999998753 6899999999963 24689999876556999999999998854 24689999
Q ss_pred EEeecCCCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCC--cceEEEEEEEE
Q 041258 81 IFALHWFRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGR--PQGILNIGVAL 143 (510)
Q Consensus 81 VyD~d~~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGK--pqG~LnLsV~f 143 (510)
|||.+.++|++||.+.++|.++..+ ..+++|..+.|+ ..|.|.+.+.+
T Consensus 78 V~d~~~~~~~~iG~~~~~l~~l~~g---------------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 78 VYDEDSGDDDFLGQACLPLDSLRQG---------------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EEeCCCCCCcEeEEEEEEhHHhcCc---------------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 9999866999999999999998532 135788887775 47788887765
No 49
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.67 E-value=2.4e-16 Score=140.16 Aligned_cols=96 Identities=10% Similarity=0.229 Sum_probs=83.6
Q ss_pred ccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCCC-----eeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEE
Q 041258 7 APFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPNR-----KLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMI 79 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~-----K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~V 79 (510)
+..+.|+|+|+.|+||+.. .+.+||||.+.+.|+. +++|+|.++ +.||+|||+|.|+|+.+.|. ...|.|
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~--~~~L~~ 87 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLY--QKTLQV 87 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhh--cCEEEE
Confidence 3467899999999999986 3789999999998754 689999875 99999999999999988773 789999
Q ss_pred EEEeecCC-CCcceEEEEEeCcccCCC
Q 041258 80 EIFALHWF-RDMHVGTVRVLVGNLIPP 105 (510)
Q Consensus 80 EVyD~d~~-gDdlIGeVrVPLsdLl~~ 105 (510)
.||+.+.+ ++++||.+.|+|.++-..
T Consensus 88 ~V~~~~~~~~~~~lG~~~i~L~~~~~~ 114 (124)
T cd08680 88 DVCSVGPDQQEECLGGAQISLADFESS 114 (124)
T ss_pred EEEeCCCCCceeEEEEEEEEhhhccCC
Confidence 99999866 789999999999999443
No 50
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.67 E-value=4.6e-16 Score=140.55 Aligned_cols=89 Identities=22% Similarity=0.330 Sum_probs=77.0
Q ss_pred ceEEEEEEEEecCCCCCCCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCCC
Q 041258 9 FQLLELNIISAQDLAPVSRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWFR 88 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~g 88 (510)
|+.|.|+|++|++|.... ..||||++.++ .++.+|++.+ +.||.|||+|.|.+... ...|.|+|||.+.+.
T Consensus 1 m~~L~V~Vv~Ar~L~~~~-~~dPYV~Ik~g-~~k~kT~v~~--~~nP~WnE~F~F~~~~~-----~~~L~v~V~dkd~~~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD-KFNTYVTLKVQ-NVKSTTIAVR--GSQPCWEQDFMFEINRL-----DLGLVIELWNKGLIW 71 (127)
T ss_pred CceEEEEEEEeeCCCCCC-CCCCeEEEEEC-CEEeEeeECC--CCCCceeeEEEEEEcCC-----CCEEEEEEEeCCCcC
Confidence 468999999999997643 45999999995 5788999985 36999999999999763 345999999999889
Q ss_pred CcceEEEEEeCcccCCCC
Q 041258 89 DMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 89 DdlIGeVrVPLsdLl~~~ 106 (510)
|++||.+.|||.++....
T Consensus 72 DD~lG~v~i~L~~v~~~~ 89 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSN 89 (127)
T ss_pred CCceEEEEEEhHHcccCC
Confidence 999999999999998654
No 51
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.67 E-value=2.4e-16 Score=138.12 Aligned_cols=95 Identities=17% Similarity=0.278 Sum_probs=80.3
Q ss_pred cceEEEEEEEEecCCCCC-CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEE
Q 041258 8 PFQLLELNIISAQDLAPV-SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIF 82 (510)
Q Consensus 8 P~gtLEVTVISAqdLk~v-~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVy 82 (510)
..+.|+|+|+.|++|... .+.+||||.+.+.|+ .+++|+|.++ +.||+|||+|.|.+....+ ...|.|+||
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~---~~~l~v~V~ 85 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPD-SANPLFHETFSFDVNERDY---QKRLLVTVW 85 (119)
T ss_pred cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccC-CCCCccccEEEEEcChHHh---CCEEEEEEE
Confidence 467899999999999876 478999999999874 3668999864 8999999999999987644 346889999
Q ss_pred eecCC--CCcceEEEEEeCcccCCCC
Q 041258 83 ALHWF--RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 83 D~d~~--gDdlIGeVrVPLsdLl~~~ 106 (510)
|.+.. ++++||.+.|||.++..+.
T Consensus 86 ~~~~~~~~~~~lG~~~i~l~~~~~~~ 111 (119)
T cd08685 86 NKLSKSRDSGLLGCMSFGVKSIVNQK 111 (119)
T ss_pred CCCCCcCCCEEEEEEEecHHHhccCc
Confidence 98754 4789999999999998543
No 52
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.67 E-value=4.3e-16 Score=133.51 Aligned_cols=96 Identities=20% Similarity=0.372 Sum_probs=80.9
Q ss_pred ccceEEEEEEEEecCCCCC---CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEE
Q 041258 7 APFQLLELNIISAQDLAPV---SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMI 79 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v---~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~V 79 (510)
+..+.|+|+|++|++|+.. .+.+||||.+.+.++ .+.+|+|.+ ++.||+|||+|.|.+....+. ...|.|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~f~f~i~~~~l~--~~~l~i 87 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKK-NTTNPVFNETLKYHISKSQLE--TRTLQL 87 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccC-CCCCCcccceEEEeCCHHHhC--CCEEEE
Confidence 3467899999999999875 378999999998654 467999875 599999999999999876542 568999
Q ss_pred EEEeecCC-CCcceEEEEEeCcccCCC
Q 041258 80 EIFALHWF-RDMHVGTVRVLVGNLIPP 105 (510)
Q Consensus 80 EVyD~d~~-gDdlIGeVrVPLsdLl~~ 105 (510)
+|||.+.+ ++++||++.|+|.++...
T Consensus 88 ~v~d~~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd08521 88 SVWHHDRFGRNTFLGEVEIPLDSWDLD 114 (123)
T ss_pred EEEeCCCCcCCceeeEEEEeccccccc
Confidence 99999855 789999999999999643
No 53
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.67 E-value=4.2e-16 Score=136.87 Aligned_cols=95 Identities=21% Similarity=0.367 Sum_probs=80.5
Q ss_pred cceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC--CeeEeeecCCCCCCceeceEEEEE-ecCCCCCCCCceEEEEEE
Q 041258 8 PFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN--RKLSTRVDAHGRNNPTWNDKFVFR-VDEDFLHNDTSAVMIEIF 82 (510)
Q Consensus 8 P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd--~K~rTrVdr~Gg~NPvWNEkF~F~-V~e~~L~~~~s~L~VEVy 82 (510)
..+.|+|+|++|++|... .+..||||.+.+.+. ++.+|+|++ + .||+|||+|.|. ++...+ ....|.|+||
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~l--~~~~L~~~V~ 89 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQR-G-PNPVFNETFTFSRVEPEEL--NNMALRFRLY 89 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeeccccc-C-CCCcccCEEEECCCCHHHh--ccCEEEEEEE
Confidence 357899999999999987 478899999888665 578999975 4 999999999998 776655 3788999999
Q ss_pred eecCC-CCcceEEEEEeCcccCCCC
Q 041258 83 ALHWF-RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 83 D~d~~-gDdlIGeVrVPLsdLl~~~ 106 (510)
|++.+ ++++||++.|+|.++....
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~ 114 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEG 114 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCC
Confidence 99865 6999999999999996543
No 54
>PLN03008 Phospholipase D delta
Probab=99.67 E-value=7.7e-16 Score=171.85 Aligned_cols=128 Identities=19% Similarity=0.258 Sum_probs=107.2
Q ss_pred ceEEEEEEEEecCCCCC--------------------------------------------CCCCCcEEEEEEcCCCeeE
Q 041258 9 FQLLELNIISAQDLAPV--------------------------------------------SRSMRTYAVAWVHPNRKLS 44 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v--------------------------------------------~GKmDPYVVV~I~pd~K~r 44 (510)
.|+|+|+|++|+.|+++ .+++||||+|.+...++.+
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 58999999999999851 1256999999996555779
Q ss_pred eeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCCCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEE
Q 041258 45 TRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWFRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVAL 124 (510)
Q Consensus 45 TrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsy 124 (510)
|+|.++ +.||+|||.|.|.|++. ...|+|+|||.+.+++++||++.|||.+|..+.. ...|+
T Consensus 93 TrVi~n-~~NPvWNE~F~f~vah~-----~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~------------vd~Wl 154 (868)
T PLN03008 93 TRVLKN-SQEPLWDEKFNISIAHP-----FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGER------------ISGWF 154 (868)
T ss_pred EEeCCC-CCCCCcceeEEEEecCC-----CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCc------------eEEEE
Confidence 999865 88999999999999984 4689999999999999999999999999987652 34689
Q ss_pred EeeCCCCCc---ceEEEEEEEEeeCCCcCCCCccc
Q 041258 125 QVRRPSGRP---QGILNIGVALLDSSMRSMPLYTQ 156 (510)
Q Consensus 125 qLrrpSGKp---qG~LnLsV~f~d~smrs~P~y~~ 156 (510)
+|....+++ .++|+|.++|.++.. .|.|..
T Consensus 155 ~Ll~~~~kp~k~~~kl~v~lqf~pv~~--~~~~~~ 187 (868)
T PLN03008 155 PVLGASGKPPKAETAIFIDMKFTPFDQ--IHSYRC 187 (868)
T ss_pred EccccCCCCCCCCcEEEEEEEEEEccc--cccccc
Confidence 998877754 579999999999876 566653
No 55
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.66 E-value=1.2e-15 Score=129.48 Aligned_cols=114 Identities=16% Similarity=0.139 Sum_probs=84.8
Q ss_pred EEEEEEEecCCCCCCCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCCCCcc
Q 041258 12 LELNIISAQDLAPVSRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWFRDMH 91 (510)
Q Consensus 12 LEVTVISAqdLk~v~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~gDdl 91 (510)
|+|+|++|++|+.. +.+||||++.+.+....+|++.+ + .||+|||+|.|.+....+ ....|.|.|+|.+.. +..
T Consensus 2 L~v~vi~a~~l~~~-~~~dpyv~v~~~~~~~~kT~~~~-~-~~P~Wne~f~f~v~~~~~--~~~~l~i~v~d~~~~-~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK-GTRDPYCTVSLDQVEVARTKTVE-K-LNPFWGEEFVFDDPPPDV--TFFTLSFYNKDKRSK-DRD 75 (117)
T ss_pred eEEEEEEecCCCcC-CCCCceEEEEECCEEeEecceEE-C-CCCcccceEEEecCCccc--cEEEEEEEEEecccC-CCe
Confidence 89999999999987 89999999999765567999885 4 999999999999987543 246788888887644 233
Q ss_pred eEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCC--CCCcceEEEEEEEE
Q 041258 92 VGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRP--SGRPQGILNIGVAL 143 (510)
Q Consensus 92 IGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrp--SGKpqG~LnLsV~f 143 (510)
+|..+|+|..+..++. ...||+|... .++..|+|+|.++|
T Consensus 76 ~~~g~v~l~~~~~~~~------------~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVALSKLDLGQG------------KDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEEecCcCCCCc------------ceeEEECccCCCCCCcCceEEEEEEC
Confidence 4455566665554331 2347887632 34669999999976
No 56
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.66 E-value=8.8e-16 Score=140.80 Aligned_cols=102 Identities=15% Similarity=0.259 Sum_probs=83.6
Q ss_pred ceEEEEEEEEecCCCCC---CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEE
Q 041258 9 FQLLELNIISAQDLAPV---SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEI 81 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v---~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEV 81 (510)
.+.|+|+|+.|++|... .+.+||||.+.+.++ .+++|+|++ ++.||+|||+|.|.|.. ....|.|+|
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~k-ktlnPvfNE~F~f~v~l-----~~~~L~v~V 101 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIAR-KTLDPLYQQQLVFDVSP-----TGKTLQVIV 101 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecC-CCCCCccCCeEEEEEcC-----CCCEEEEEE
Confidence 47899999999999864 378999999999875 378999986 59999999999999982 367999999
Q ss_pred E-eecCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeC
Q 041258 82 F-ALHWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRR 128 (510)
Q Consensus 82 y-D~d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrr 128 (510)
| |.+.+ ++++||++.|+|.++-.+. ....||+|..
T Consensus 102 ~~d~~~~~~~~~iG~~~i~L~~l~~~~------------~~~~Wy~L~~ 138 (146)
T cd04028 102 WGDYGRMDKKVFMGVAQILLDDLDLSN------------LVIGWYKLFP 138 (146)
T ss_pred EeCCCCCCCCceEEEEEEEcccccCCC------------CceeEEecCC
Confidence 9 56655 7899999999999974332 1235888864
No 57
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=1.5e-15 Score=134.51 Aligned_cols=124 Identities=21% Similarity=0.268 Sum_probs=93.8
Q ss_pred EEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCC-----CCCCCCceEEEEEEe
Q 041258 11 LLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDED-----FLHNDTSAVMIEIFA 83 (510)
Q Consensus 11 tLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~-----~L~~~~s~L~VEVyD 83 (510)
.|+|+|++|++|... .+.+||||++.+. .++.+|++.+ ++.||+|||.|.|.+..- .+......|.|+|||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~-~~~~kT~v~~-~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d 79 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL-NQSQETEVIK-ETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD 79 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC-CeeeEeeeEc-CCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence 489999999999876 5899999999996 5788999986 499999999999975321 111123579999999
Q ss_pred ecCC-CCcceEEEEE-eCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEEeeC
Q 041258 84 LHWF-RDMHVGTVRV-LVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVALLDS 146 (510)
Q Consensus 84 ~d~~-gDdlIGeVrV-PLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f~d~ 146 (510)
++.+ +|++||++.+ |+..+..... ......|++|. ..++.+|+|.|.+.+.+.
T Consensus 80 ~d~~~~d~~iG~~~i~~~~~~~~~~~---------~~~~~~W~~L~-~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 80 QDSVGKDEFLGRSVAKPLVKLDLEED---------FPPKLQWFPIY-KGGQSAGELLAAFELIEV 134 (135)
T ss_pred CcCCCCCccceEEEeeeeeecccCCC---------CCCCceEEEee-cCCCchhheeEEeEEEEe
Confidence 9865 6899999997 6554433211 11233478886 467799999999999875
No 58
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.66 E-value=4.9e-16 Score=132.96 Aligned_cols=90 Identities=21% Similarity=0.378 Sum_probs=78.5
Q ss_pred EEEEEEEecCCCCC---CCCCCcEEEEEEcCCCeeEeeecCCCCCCcee-ceEEEEEecCCCCCCCCceEEEEEEeecCC
Q 041258 12 LELNIISAQDLAPV---SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTW-NDKFVFRVDEDFLHNDTSAVMIEIFALHWF 87 (510)
Q Consensus 12 LEVTVISAqdLk~v---~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvW-NEkF~F~V~e~~L~~~~s~L~VEVyD~d~~ 87 (510)
|+|+|++|++|+.. .+.+||||++.+++ .+++|+|.++ +.||+| ||+|.|.+....+ ....|.|+|||.+.+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l--~~~~l~i~V~d~d~~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-TTYKTDVVKK-SLNPVWNSEWFRFEVDDEEL--QDEPLQIRVMDHDTY 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-eeEecceecC-CCCCcccCcEEEEEcChHHc--CCCeEEEEEEeCCCC
Confidence 68999999999875 36899999999965 7889999864 899999 9999999987654 246899999999866
Q ss_pred -CCcceEEEEEeCcccCCC
Q 041258 88 -RDMHVGTVRVLVGNLIPP 105 (510)
Q Consensus 88 -gDdlIGeVrVPLsdLl~~ 105 (510)
+|++||++.++|.++...
T Consensus 77 ~~~~~iG~~~~~l~~l~~~ 95 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLK 95 (110)
T ss_pred CCCCceEEEEEeHHHhccc
Confidence 689999999999999873
No 59
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.66 E-value=2e-15 Score=136.67 Aligned_cols=115 Identities=19% Similarity=0.260 Sum_probs=91.6
Q ss_pred EEEEEEEEecCCCCC-CCCCCcEEEEEEcCC------------CeeEeeecCCCCCCcee-ceEEEEEecCCCCCCCCce
Q 041258 11 LLELNIISAQDLAPV-SRSMRTYAVAWVHPN------------RKLSTRVDAHGRNNPTW-NDKFVFRVDEDFLHNDTSA 76 (510)
Q Consensus 11 tLEVTVISAqdLk~v-~GKmDPYVVV~I~pd------------~K~rTrVdr~Gg~NPvW-NEkF~F~V~e~~L~~~~s~ 76 (510)
.+.|++++|++|+.. ++++||||.+.+.+. ++++|+|.+ ++.||+| ||+|.|.+.. ...
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~-~tlnP~W~nE~f~f~v~~------~~~ 74 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVE-NTINPVWHREQFVFVGLP------TDV 74 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEc-CCCCCceEceEEEEEcCC------CCE
Confidence 468999999999743 599999999999753 368999986 4899999 9999999964 347
Q ss_pred EEEEEEeecCC----CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCC--CCCcceEEEEEE
Q 041258 77 VMIEIFALHWF----RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRP--SGRPQGILNIGV 141 (510)
Q Consensus 77 L~VEVyD~d~~----gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrp--SGKpqG~LnLsV 141 (510)
|.|+|||++.. .|++||.+.|||.+++.+.. ......+|+|.+. .++.+|.|.|.+
T Consensus 75 L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~---------~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 75 LEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHA---------IGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEEecCCCCCccCCceEEEEEEEHHHhccccc---------CCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 99999997533 27999999999999987653 1224468888753 457799998865
No 60
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=1.1e-15 Score=133.82 Aligned_cols=91 Identities=23% Similarity=0.351 Sum_probs=79.4
Q ss_pred eEEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC
Q 041258 10 QLLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF 87 (510)
Q Consensus 10 gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~ 87 (510)
|.|+|+|++|++|++. .+.+||||++++++..+.+|++.+ ++.||+|||.|.|.+... ...|.|+|||++.+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~-~t~~P~Wne~f~~~v~~~-----~~~L~v~v~d~~~~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTIS-NTLNPVWDEVLYVPVTSP-----NQKITLEVMDYEKV 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEEC-CCcCCccCceEEEEecCC-----CCEEEEEEEECCCC
Confidence 5799999999999987 489999999999755678999875 589999999999998764 35899999999866
Q ss_pred -CCcceEEEEEeCcccCCCC
Q 041258 88 -RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 88 -gDdlIGeVrVPLsdLl~~~ 106 (510)
.|++||++.|+|.+++...
T Consensus 75 ~~d~~IG~~~~~l~~l~~~~ 94 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKKN 94 (120)
T ss_pred CCCCeeeEEEEeHHHhhCCC
Confidence 6889999999999998753
No 61
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.65 E-value=2.2e-15 Score=132.17 Aligned_cols=110 Identities=18% Similarity=0.298 Sum_probs=88.3
Q ss_pred EEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecC--
Q 041258 11 LLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHW-- 86 (510)
Q Consensus 11 tLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~-- 86 (510)
.|+|+|++|++|+.. .+..||||++.+. ..+.+|++.++ +.||+|||.|.|.+... ...|.|+|||++.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-~~~~kT~~v~~-t~~P~Wne~f~f~~~~~-----~~~l~i~v~d~d~~~ 74 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG-KTKKRTKTIPQ-NLNPVWNEKFHFECHNS-----SDRIKVRVWDEDDDI 74 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC-CEeeecceecC-CCCCccceEEEEEecCC-----CCEEEEEEEECCCCc
Confidence 589999999999876 4789999999985 46789998764 89999999999998653 3579999999874
Q ss_pred ----------CCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCC--CCCcceEEEEEE
Q 041258 87 ----------FRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRP--SGRPQGILNIGV 141 (510)
Q Consensus 87 ----------~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrp--SGKpqG~LnLsV 141 (510)
..|++||.+.|+|.++.... ..||.|... .++.+|.|.|.+
T Consensus 75 ~~~~~~~~~~~~~~~iG~~~i~l~~~~~~~--------------~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 75 KSRLKQKFTRESDDFLGQTIIEVRTLSGEM--------------DVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccccceeccccCCCcceEEEEEhHHccCCC--------------CeEEECccCCCCCcEeEEEEEEC
Confidence 25899999999999874211 247787643 345799998864
No 62
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.65 E-value=1.1e-15 Score=131.34 Aligned_cols=92 Identities=18% Similarity=0.342 Sum_probs=77.0
Q ss_pred cceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecC-CCCCCCCceEEEE
Q 041258 8 PFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDE-DFLHNDTSAVMIE 80 (510)
Q Consensus 8 P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e-~~L~~~~s~L~VE 80 (510)
..+.|.|+|++|++|... .+.+||||++.+.+. .+.+|++.+ ++.||+|||+|.|.+.. ..+ ....|.|+
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l--~~~~l~~~ 90 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVK-KTLNPEWNQTFEYSNVRRETL--KERTLEVT 90 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccC-CCCCCccccEEEEcccCHHHh--CCCEEEEE
Confidence 357899999999999876 478999999999762 577999986 49999999999998543 333 25689999
Q ss_pred EEeecCC-CCcceEEEEEeCccc
Q 041258 81 IFALHWF-RDMHVGTVRVLVGNL 102 (510)
Q Consensus 81 VyD~d~~-gDdlIGeVrVPLsdL 102 (510)
|||.+.+ +|++||.+.|+|.+.
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~ 113 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADA 113 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccc
Confidence 9999865 689999999999983
No 63
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=9.9e-16 Score=131.49 Aligned_cols=102 Identities=23% Similarity=0.311 Sum_probs=83.9
Q ss_pred CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCCCCcceEEEEEeCcccCCC
Q 041258 26 SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWFRDMHVGTVRVLVGNLIPP 105 (510)
Q Consensus 26 ~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~gDdlIGeVrVPLsdLl~~ 105 (510)
.|++||||++.+++....+|++.++ +.||+|||.|.|.|.+. ....|.|+|+|.+.++|++||++.|+|.+++..
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~----~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~ 84 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKK-TNNPSWNASTEFLVTDR----RKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDA 84 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeecc-CCCCccCCceEEEecCc----CCCEEEEEEEECCCCCCCeEEEEEecHHHHHhh
Confidence 5889999999997555679999764 89999999999999874 357899999999877999999999999999764
Q ss_pred CCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEEeeC
Q 041258 106 PTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVALLDS 146 (510)
Q Consensus 106 ~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f~d~ 146 (510)
.. . ...||+|. ++++|.|+|.+.|.++
T Consensus 85 ~~---------~--~~~w~~L~---~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 85 TS---------V--GQQWFPLS---GNGQGRIRISALWKPV 111 (111)
T ss_pred hh---------c--cceeEECC---CCCCCEEEEEEEEecC
Confidence 31 1 12477875 3689999999999874
No 64
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.64 E-value=2.1e-15 Score=130.11 Aligned_cols=97 Identities=23% Similarity=0.405 Sum_probs=79.7
Q ss_pred cccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcC--CCeeEeeecCCCCCCceeceEEEEEe-cCCCCCCCCceEEEE
Q 041258 6 LAPFQLLELNIISAQDLAPV--SRSMRTYAVAWVHP--NRKLSTRVDAHGRNNPTWNDKFVFRV-DEDFLHNDTSAVMIE 80 (510)
Q Consensus 6 ~~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~p--d~K~rTrVdr~Gg~NPvWNEkF~F~V-~e~~L~~~~s~L~VE 80 (510)
.++...|+|+|++|++|+.. .+..||||++.+.+ .++.+|+|.++ +.||+|||+|.|.+ +.+.+ ....|.|+
T Consensus 12 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l--~~~~l~~~ 88 (125)
T cd08386 12 DFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKL--QQRVLYLQ 88 (125)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHh--CCCEEEEE
Confidence 34567999999999999876 47899999999954 35789999864 89999999999984 33222 24689999
Q ss_pred EEeecCC-CCcceEEEEEeCcccCCC
Q 041258 81 IFALHWF-RDMHVGTVRVLVGNLIPP 105 (510)
Q Consensus 81 VyD~d~~-gDdlIGeVrVPLsdLl~~ 105 (510)
|||++.+ ++++||++.|+|.++...
T Consensus 89 v~d~d~~~~~~~iG~~~i~l~~l~~~ 114 (125)
T cd08386 89 VLDYDRFSRNDPIGEVSLPLNKVDLT 114 (125)
T ss_pred EEeCCCCcCCcEeeEEEEecccccCC
Confidence 9999865 789999999999998753
No 65
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.62 E-value=2.4e-15 Score=132.80 Aligned_cols=98 Identities=15% Similarity=0.244 Sum_probs=81.7
Q ss_pred cceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC------CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEE
Q 041258 8 PFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN------RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMI 79 (510)
Q Consensus 8 P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd------~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~V 79 (510)
..+.|+|+|++|++|+.. .+.+||||+|.+.+. .+.+|+|.++ +.||+|||+|.|.+...........|.|
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEE
Confidence 357899999999999986 489999999999743 4789999864 8999999999999976422223568999
Q ss_pred EEEeecCC-CCcceEEEEEeCcccCCCC
Q 041258 80 EIFALHWF-RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 80 EVyD~d~~-gDdlIGeVrVPLsdLl~~~ 106 (510)
+|||++.+ +|++||++.|+|.++...+
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~~~ 120 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPGVE 120 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCccc
Confidence 99999876 5999999999999998544
No 66
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.62 E-value=7.7e-15 Score=134.93 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=95.3
Q ss_pred ceEEEEEEEEecCCCCCCCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeec-CC
Q 041258 9 FQLLELNIISAQDLAPVSRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALH-WF 87 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d-~~ 87 (510)
...|.|.|++|++|+.. -+|||.+.+++....||+|..+ +.||.|||.|.|.+... ...|+|.||..+ ..
T Consensus 10 ~~sL~v~V~EAk~Lp~~---~~~Y~~i~Ld~~~vaRT~v~~~-~~nP~W~E~F~f~~~~~-----~~~l~v~v~k~~~~~ 80 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK---KRYYCELCLDKTLYARTTSKLK-TDTLFWGEHFEFSNLPP-----VSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEccCCCCc---CCceEEEEECCEEEEEEEEEcC-CCCCcceeeEEecCCCc-----ccEEEEEEEEccCcc
Confidence 35799999999999863 4899999998766679999864 88999999999987664 357999997653 32
Q ss_pred ----CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCc----------ceEEEEEEEEeeCCC
Q 041258 88 ----RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRP----------QGILNIGVALLDSSM 148 (510)
Q Consensus 88 ----gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKp----------qG~LnLsV~f~d~sm 148 (510)
++.+||.+.||+.++..+.. -..||+|...++++ .+.|+|.++|.+...
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~------------ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~ 143 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQF------------VEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRV 143 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCc------------ccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeee
Confidence 68999999999999985431 23589998765553 369999999998765
No 67
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.61 E-value=1.2e-14 Score=134.85 Aligned_cols=120 Identities=18% Similarity=0.277 Sum_probs=93.1
Q ss_pred EEEEEEEEecCCCCC----CCCCCcEEEEEE-cC---CCeeEeeecCCCCCCceeceEEEEEecCC------CCCCCCce
Q 041258 11 LLELNIISAQDLAPV----SRSMRTYAVAWV-HP---NRKLSTRVDAHGRNNPTWNDKFVFRVDED------FLHNDTSA 76 (510)
Q Consensus 11 tLEVTVISAqdLk~v----~GKmDPYVVV~I-~p---d~K~rTrVdr~Gg~NPvWNEkF~F~V~e~------~L~~~~s~ 76 (510)
.++|+|+.|.+++.. .+..||||.+.+ .+ .++.+|+|.+ ++.||+|||+|.|.|+.. .+ ....
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k-~TlnPvfNE~f~f~I~~~~~~~~R~l--~~~~ 79 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIK-DTNSPEYNESFKLNINRKHRSFQRVF--KRHG 79 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCccc-CCCCCcccceEEEEeccccchhhhhc--cCCc
Confidence 478899999886533 367999999987 23 3688999987 499999999999999764 12 2467
Q ss_pred EEEEEEeecCC--CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEEee
Q 041258 77 VMIEIFALHWF--RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVALLD 145 (510)
Q Consensus 77 L~VEVyD~d~~--gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f~d 145 (510)
|.|+|||.+.| +|++||++.|+|..+..... ...+++|++......|.|.+.|++-.
T Consensus 80 L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~------------~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 80 LKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCE------------IHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred EEEEEEeCCCcccCCCeeEEEEEEcccccccCc------------ceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 99999999854 69999999999999876441 12378887644445779999998654
No 68
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.61 E-value=6.4e-15 Score=126.57 Aligned_cols=97 Identities=22% Similarity=0.412 Sum_probs=81.2
Q ss_pred ccceEEEEEEEEecCCCCC---CCCCCcEEEEEEcCC--CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEE
Q 041258 7 APFQLLELNIISAQDLAPV---SRSMRTYAVAWVHPN--RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEI 81 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v---~GKmDPYVVV~I~pd--~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEV 81 (510)
++.+.|.|+|++|++|+.. .+..||||++.+.++ ...+|++.++ +.||+|||+|.|.+....+ ....|.|+|
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l--~~~~l~i~v 87 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRK-TQNPNFDETFVFQVSFKEL--QRRTLRLSV 87 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcC-CCCCccceEEEEEcCHHHh--cccEEEEEE
Confidence 4567899999999999876 368899999998653 4678988764 9999999999999987544 246899999
Q ss_pred EeecCC-CCcceEEEEEeCcccCCCC
Q 041258 82 FALHWF-RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 82 yD~d~~-gDdlIGeVrVPLsdLl~~~ 106 (510)
||.+.+ .+++||++.|+|.++....
T Consensus 88 ~d~~~~~~~~~iG~~~i~L~~l~~~~ 113 (123)
T cd08390 88 YDVDRFSRHCIIGHVLFPLKDLDLVK 113 (123)
T ss_pred EECCcCCCCcEEEEEEEeccceecCC
Confidence 999865 6899999999999997644
No 69
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.61 E-value=1.2e-14 Score=132.47 Aligned_cols=91 Identities=25% Similarity=0.445 Sum_probs=80.1
Q ss_pred ceEEEEEEEEecCCCCC-CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC
Q 041258 9 FQLLELNIISAQDLAPV-SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF 87 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v-~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~ 87 (510)
.|.|.|+|++|++|+.. .+.+||||++.+. .++++|++.++ +.||+|||+|.|.+.+. ...|.|+|||++.+
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g-~~~~kT~vvk~-t~nP~WnE~f~f~i~~~-----~~~l~~~V~D~d~~ 73 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLG-NQKVKTRVIKK-NLNPVWNEELTLSVPNP-----MAPLKLEVFDKDTF 73 (145)
T ss_pred CeEEEEEEEeeECCCCCCCCCcCcEEEEEEC-CEEEEeeeEcC-CCCCeecccEEEEecCC-----CCEEEEEEEECCCC
Confidence 37899999999999765 3789999999995 57899999865 99999999999999874 56899999999865
Q ss_pred -CCcceEEEEEeCcccCCCC
Q 041258 88 -RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 88 -gDdlIGeVrVPLsdLl~~~ 106 (510)
+|++||.+.|+|.+++...
T Consensus 74 ~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 74 SKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCCCEEEEEEEEHHHhhhhh
Confidence 7899999999999998765
No 70
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.59 E-value=5.3e-15 Score=133.28 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=78.1
Q ss_pred ccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEE
Q 041258 7 APFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIE 80 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VE 80 (510)
+..+.|.|+|++|++|... .+.+||||.+.+.++ .+.+|+|.+ ++.||+|||+|.|.|+...+ ....|.|+
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k-~t~nP~~nE~f~F~v~~~~l--~~~~l~~~ 88 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKR-DDTNPIFNEAMIFSVPAIVL--QDLSLRVT 88 (136)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCcccc-CCCCCeeceeEEEECCHHHh--CCcEEEEE
Confidence 3457899999999999876 478999999999765 256899886 48999999999999988765 37899999
Q ss_pred EEeecC-CCCcceEEEEEeCcc
Q 041258 81 IFALHW-FRDMHVGTVRVLVGN 101 (510)
Q Consensus 81 VyD~d~-~gDdlIGeVrVPLsd 101 (510)
|||.+. .++++||.+.|....
T Consensus 89 V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 89 VAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred EEeCCCCCCCCeeEEEEECCCC
Confidence 999985 489999999997653
No 71
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.59 E-value=6.7e-15 Score=135.45 Aligned_cols=91 Identities=22% Similarity=0.288 Sum_probs=77.3
Q ss_pred EEEEEEEEecCCCCCC----------------CCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCC
Q 041258 11 LLELNIISAQDLAPVS----------------RSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDT 74 (510)
Q Consensus 11 tLEVTVISAqdLk~v~----------------GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~ 74 (510)
.|.|+|++|++|+.+. +.+||||+|.+++ .+.+|+|.++ +.||+|||+|.|++....+ .
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-~~~kT~v~~~-t~nPvWNE~f~f~v~~p~~---~ 75 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-QKVKTSVKKN-SYNPEWNEQIVFPEMFPPL---C 75 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-EeeecceEcC-CCCCCcceEEEEEeeCCCc---C
Confidence 4899999999999863 2589999999975 5779999875 8999999999999754322 4
Q ss_pred ceEEEEEEeecCC-CCcceEEEEEeCcccCCCC
Q 041258 75 SAVMIEIFALHWF-RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 75 s~L~VEVyD~d~~-gDdlIGeVrVPLsdLl~~~ 106 (510)
..|.|+|||++.. +|++||.+.|+|.++...+
T Consensus 76 ~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 76 ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 6899999999866 8999999999999998755
No 72
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.58 E-value=8.8e-15 Score=135.04 Aligned_cols=92 Identities=23% Similarity=0.411 Sum_probs=78.8
Q ss_pred ccccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----------------------------CeeEeeecCCCCCC
Q 041258 5 ILAPFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----------------------------RKLSTRVDAHGRNN 54 (510)
Q Consensus 5 ~~~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----------------------------~K~rTrVdr~Gg~N 54 (510)
-.+|...|+|+|++|++|.+. .+.+||||+|.+.+. ..++|+|.+ ++.|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~-~tln 101 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKP-QTLN 101 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceec-CCCC
Confidence 457889999999999999876 489999999998643 236898876 4999
Q ss_pred ceeceEEEEEecCCCCCCCCceEEEEEEeecCCCCcceEEEEEeCcccCC
Q 041258 55 PTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWFRDMHVGTVRVLVGNLIP 104 (510)
Q Consensus 55 PvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~gDdlIGeVrVPLsdLl~ 104 (510)
|+|||+|.|.+.+. ....|.|+|||.+ |++||.+.|+|.++..
T Consensus 102 P~WnE~F~f~v~~~----~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~ 144 (153)
T cd08676 102 PVWNETFRFEVEDV----SNDQLHLDIWDHD---DDFLGCVNIPLKDLPS 144 (153)
T ss_pred CccccEEEEEeccC----CCCEEEEEEEecC---CCeEEEEEEEHHHhCC
Confidence 99999999999763 2568999999987 8999999999999984
No 73
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.58 E-value=1.2e-14 Score=130.16 Aligned_cols=91 Identities=22% Similarity=0.221 Sum_probs=76.7
Q ss_pred cceEEEEEEEEecCCCCC-CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecC
Q 041258 8 PFQLLELNIISAQDLAPV-SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHW 86 (510)
Q Consensus 8 P~gtLEVTVISAqdLk~v-~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~ 86 (510)
..+.|+|+|++|++|+.. .+.+||||+|.+.+ ++++|+|.++ +.||+|||+|.|.+.... ....|.|+|||++.
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~-~~~kT~vi~~-t~nPvWNE~F~f~~~~~~---~~~~L~v~V~D~d~ 100 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGG-QEKRTEVIWN-NNNPRWNATFDFGSVELS---PGGKLRFEVWDRDN 100 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECC-ccccCceecC-CCCCcCCCEEEEecccCC---CCCEEEEEEEeCCC
Confidence 368999999999999853 47899999999964 5889999865 899999999999753321 35789999999997
Q ss_pred C-CCcceEEEEEeCcccC
Q 041258 87 F-RDMHVGTVRVLVGNLI 103 (510)
Q Consensus 87 ~-gDdlIGeVrVPLsdLl 103 (510)
+ +|++||.+.|+|....
T Consensus 101 ~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 101 GWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCeeEEEEEEecCCc
Confidence 6 8999999999999655
No 74
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.58 E-value=1.4e-14 Score=125.33 Aligned_cols=97 Identities=20% Similarity=0.336 Sum_probs=80.0
Q ss_pred ccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEE-ecCCCCCCCCceEEE
Q 041258 7 APFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFR-VDEDFLHNDTSAVMI 79 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~-V~e~~L~~~~s~L~V 79 (510)
+..+.|+|+|++|++|++. .+..||||++.+.+. .+.+|++.++ +.||+|||+|.|. +....+ ....|.|
T Consensus 12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~--~~~~l~~ 88 (123)
T cd04035 12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK-TRNPEFNETLTYYGITEEDI--QRKTLRL 88 (123)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecC-CCCCCccceEEEcCCCHHHh--CCCEEEE
Confidence 3457899999999999876 478999999998653 3789999864 8999999999996 443322 2468999
Q ss_pred EEEeecCCCCcceEEEEEeCcccCCCC
Q 041258 80 EIFALHWFRDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 80 EVyD~d~~gDdlIGeVrVPLsdLl~~~ 106 (510)
+|||.+.+++++||.+.|+|.+|..+.
T Consensus 89 ~v~d~~~~~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 89 LVLDEDRFGNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred EEEEcCCcCCeeEEEEEEEcccCCCCc
Confidence 999998668999999999999998654
No 75
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.58 E-value=9e-15 Score=128.02 Aligned_cols=92 Identities=17% Similarity=0.307 Sum_probs=78.3
Q ss_pred ccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEE
Q 041258 7 APFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIE 80 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VE 80 (510)
+..+.|.|+|++|++|... .+..||||++.+.++ .+.+|++.+ ++.||+|||+|.|.+....+ ....|.|+
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~l--~~~~l~~~ 86 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKK-KTLNPEFNEEFFYDIKHSDL--AKKTLEIT 86 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEe-ccCCCCcccEEEEECCHHHh--CCCEEEEE
Confidence 3468999999999999886 478999999999753 367999986 59999999999999986544 25689999
Q ss_pred EEeecCC-CCcceEEEEEeCcc
Q 041258 81 IFALHWF-RDMHVGTVRVLVGN 101 (510)
Q Consensus 81 VyD~d~~-gDdlIGeVrVPLsd 101 (510)
|||.+.+ .|++||.+.|+|..
T Consensus 87 V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 87 VWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred EEeCCCCCCccEEEEEEEecCC
Confidence 9999865 78999999999975
No 76
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.58 E-value=9.1e-15 Score=128.92 Aligned_cols=92 Identities=17% Similarity=0.298 Sum_probs=77.1
Q ss_pred ccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEE
Q 041258 7 APFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIE 80 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VE 80 (510)
++.+.|+|+|++|++|+.. .+.+||||.+.+.+. .+.+|++.+ ++.||+|||+|.|.+....+ ....|.|+
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l--~~~~l~~~ 88 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-RTLNPYYNESFSFEVPFEQI--QKVHLIVT 88 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeecccee-CCCCCcccceEEEECCHHHh--CCCEEEEE
Confidence 4568999999999999876 488999999999643 356888865 59999999999999976544 24589999
Q ss_pred EEeecCC-CCcceEEEEEeCcc
Q 041258 81 IFALHWF-RDMHVGTVRVLVGN 101 (510)
Q Consensus 81 VyD~d~~-gDdlIGeVrVPLsd 101 (510)
|||++.+ +|++||.+.|++..
T Consensus 89 v~d~~~~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 89 VLDYDRIGKNDPIGKVVLGCNA 110 (136)
T ss_pred EEeCCCCCCCceeEEEEECCcc
Confidence 9999865 68999999999975
No 77
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.57 E-value=6.8e-15 Score=133.48 Aligned_cols=91 Identities=18% Similarity=0.286 Sum_probs=78.6
Q ss_pred cceEEEEEEEEecCCCCCC----CCCCcEEEEEEcCCC----eeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEE
Q 041258 8 PFQLLELNIISAQDLAPVS----RSMRTYAVAWVHPNR----KLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMI 79 (510)
Q Consensus 8 P~gtLEVTVISAqdLk~v~----GKmDPYVVV~I~pd~----K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~V 79 (510)
..+.|.|+|+.|++|.... +.+||||.+.+.++. +++|+|.+ ++.||+|||.|.|.|+...|. ...|.|
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k-~t~nPvfNE~f~F~v~~~~L~--~~~L~~ 89 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAK-HKINPVWNEMIMFELPSELLA--ASSVEL 89 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceee-CCCCCccccEEEEECCHHHhC--ccEEEE
Confidence 4578999999999999863 458999999998753 56899886 599999999999999987763 678999
Q ss_pred EEEeecCC-CCcceEEEEEeCcc
Q 041258 80 EIFALHWF-RDMHVGTVRVLVGN 101 (510)
Q Consensus 80 EVyD~d~~-gDdlIGeVrVPLsd 101 (510)
+|+|++.+ ++++||.+.+++..
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC
Confidence 99999865 78999999999974
No 78
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.57 E-value=1.4e-14 Score=129.75 Aligned_cols=94 Identities=21% Similarity=0.368 Sum_probs=79.1
Q ss_pred EEEEEEEecCCCCC-CCCCCcEEEEEEcC---CCeeEeeecCCCCCCceeceEEEEEecCCCC-----------CCCCce
Q 041258 12 LELNIISAQDLAPV-SRSMRTYAVAWVHP---NRKLSTRVDAHGRNNPTWNDKFVFRVDEDFL-----------HNDTSA 76 (510)
Q Consensus 12 LEVTVISAqdLk~v-~GKmDPYVVV~I~p---d~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L-----------~~~~s~ 76 (510)
|+|+|++|++|+.. .+.+||||++.+.. ..+++|+++++ +.||+|||+|.|.+..... +.....
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEccccccccccccccccccccccE
Confidence 68999999999877 68999999999974 46889999875 8999999999999877521 013568
Q ss_pred EEEEEEeecCC-CCcceEEEEEeCcccCCCC
Q 041258 77 VMIEIFALHWF-RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 77 L~VEVyD~d~~-gDdlIGeVrVPLsdLl~~~ 106 (510)
|.|+|||.+.+ ++++||++.|+|.++....
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~ 110 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAG 110 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCC
Confidence 99999999876 7999999999999998543
No 79
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.57 E-value=1.2e-14 Score=129.82 Aligned_cols=94 Identities=17% Similarity=0.246 Sum_probs=79.3
Q ss_pred ccceEEEEEEEEecCCCCC-CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEE
Q 041258 7 APFQLLELNIISAQDLAPV-SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEI 81 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v-~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEV 81 (510)
+..+.|+|+|++|++|... .+.+||||.|++.+. .+.+|+|.+ ++.||+|||+|.|.|+...+. ...|.|+|
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~-~~~nP~fnE~F~f~i~~~~l~--~~~L~~~V 88 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVD-GAASPSFNESFSFKVTSRQLD--TASLSLSV 88 (137)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEe-CCCCCcccceEEEECCHHHhC--ccEEEEEE
Confidence 3468899999999999866 578999999999865 366899875 699999999999999877663 57999999
Q ss_pred EeecC-CCCcceEEEEEeCcccC
Q 041258 82 FALHW-FRDMHVGTVRVLVGNLI 103 (510)
Q Consensus 82 yD~d~-~gDdlIGeVrVPLsdLl 103 (510)
++.+. .++++||++.|+...+.
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccC
Confidence 99984 48899999999976554
No 80
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.56 E-value=1.7e-14 Score=133.20 Aligned_cols=96 Identities=19% Similarity=0.311 Sum_probs=79.9
Q ss_pred cceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEec-CCCCCCCCceEEEE
Q 041258 8 PFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVD-EDFLHNDTSAVMIE 80 (510)
Q Consensus 8 P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~-e~~L~~~~s~L~VE 80 (510)
+.+.|+|+|++|++|+.. .+.+||||.+.+.++ .+++|+|.++ +.||+|||+|.|.+. ...+ ....|.|+
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l--~~~~L~i~ 101 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDL--SQACLELT 101 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHh--CCCEEEEE
Confidence 568999999999999987 488999999998643 5789999875 899999999999853 3323 24689999
Q ss_pred EEeecCC-CCcceEEEEEeCcccCCCC
Q 041258 81 IFALHWF-RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 81 VyD~d~~-gDdlIGeVrVPLsdLl~~~ 106 (510)
|||.+.+ +|++||++.|+|.++...+
T Consensus 102 V~d~d~~~~d~~lG~v~i~l~~~~~~~ 128 (162)
T cd04020 102 VWDHDKLSSNDFLGGVRLGLGTGKSYG 128 (162)
T ss_pred EEeCCCCCCCceEEEEEEeCCccccCC
Confidence 9999866 5999999999999987543
No 81
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.56 E-value=1.3e-14 Score=127.63 Aligned_cols=92 Identities=25% Similarity=0.354 Sum_probs=77.0
Q ss_pred cccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEE
Q 041258 6 LAPFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMI 79 (510)
Q Consensus 6 ~~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~V 79 (510)
.++.+.|+|+|++|++|+.. .+.+||||++.+.+. .+.+|+|.+ ++.||+|||+|.|.+....+ +...|.|
T Consensus 10 ~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~~--~~~~l~~ 86 (134)
T cd08403 10 LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKK-NTLNPTYNEALVFDVPPENV--DNVSLII 86 (134)
T ss_pred cCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCccc-CCCCCcccceEEEECCHHHh--CCCEEEE
Confidence 45678999999999999986 489999999998542 366888865 59999999999999976544 2457999
Q ss_pred EEEeecCC-CCcceEEEEEeCc
Q 041258 80 EIFALHWF-RDMHVGTVRVLVG 100 (510)
Q Consensus 80 EVyD~d~~-gDdlIGeVrVPLs 100 (510)
+|||++.+ +|++||++.|++.
T Consensus 87 ~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 87 AVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred EEEECCCCCCCceeEEEEECCC
Confidence 99999866 6899999999987
No 82
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.56 E-value=1.7e-14 Score=127.48 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=77.9
Q ss_pred ccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEE
Q 041258 7 APFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIE 80 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VE 80 (510)
+..+.|.|+|++|++|+.. .+.+||||++.+.++ .+.+|+|.+ ++.||+|||+|.|.+....+ ....|.|+
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k-~t~nP~w~e~F~f~v~~~~~--~~~~l~~~ 88 (136)
T cd08404 12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKK-CTLNPVFNESFVFDIPSEEL--EDISVEFL 88 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCcccc-CCCCCccCceEEEECCHHHh--CCCEEEEE
Confidence 3467899999999999876 589999999999654 256888876 59999999999999986544 35689999
Q ss_pred EEeecCC-CCcceEEEEEeCcc
Q 041258 81 IFALHWF-RDMHVGTVRVLVGN 101 (510)
Q Consensus 81 VyD~d~~-gDdlIGeVrVPLsd 101 (510)
|||++.+ ++++||++.|++..
T Consensus 89 v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 89 VLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred EEECCCCCCCccEEEEEECCcC
Confidence 9999866 78999999999988
No 83
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.56 E-value=2e-14 Score=127.77 Aligned_cols=90 Identities=17% Similarity=0.295 Sum_probs=74.6
Q ss_pred ccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEE
Q 041258 7 APFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIE 80 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VE 80 (510)
+..+.|+|+|++|++|+.. .+.+||||.+.+.++ .+++|+|.+ ++.||+|||+|.|.|....+. ...|.|+
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wnE~F~f~i~~~~l~--~~~l~~~ 87 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMR-GTIDPFYNESFSFKVPQEELE--NVSLVFT 87 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCcccc-CCCCCccceeEEEeCCHHHhC--CCEEEEE
Confidence 4468999999999999876 488999999998543 357899876 599999999999999765442 4579999
Q ss_pred EEeecCC-CCcceEEEEEeC
Q 041258 81 IFALHWF-RDMHVGTVRVLV 99 (510)
Q Consensus 81 VyD~d~~-gDdlIGeVrVPL 99 (510)
|||++.. +|++||.+.|..
T Consensus 88 V~d~d~~~~~~~iG~~~l~~ 107 (135)
T cd08410 88 VYGHNVKSSNDFIGRIVIGQ 107 (135)
T ss_pred EEeCCCCCCCcEEEEEEEcC
Confidence 9999854 799999998765
No 84
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.55 E-value=1.8e-14 Score=129.61 Aligned_cols=93 Identities=18% Similarity=0.303 Sum_probs=79.2
Q ss_pred ccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC-----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEE
Q 041258 7 APFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN-----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMI 79 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd-----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~V 79 (510)
+..+.|.|+|+.|++|... .+..||||.+.+.+. .+.+|+|.+ ++.||+|||+|.|.|+.+.+ ....|.|
T Consensus 12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~-~t~nPvfnEtF~f~i~~~~l--~~~~L~~ 88 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRR-GQPDPEFKETFVFQVALFQL--SEVTLMF 88 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeec-CCCCCcEeeeEEEECCHHHh--CccEEEE
Confidence 4468999999999999986 478999999999764 256899986 58999999999999987665 3679999
Q ss_pred EEEeecCC-CCcceEEEEEeCccc
Q 041258 80 EIFALHWF-RDMHVGTVRVLVGNL 102 (510)
Q Consensus 80 EVyD~d~~-gDdlIGeVrVPLsdL 102 (510)
+|||.+.+ ++++||++.|++...
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCC
Confidence 99999854 899999999998744
No 85
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.55 E-value=4.9e-14 Score=121.86 Aligned_cols=86 Identities=16% Similarity=0.289 Sum_probs=72.6
Q ss_pred EEEecCCCCC--CCCCCcEEEEEEcCCC------eeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecC-
Q 041258 16 IISAQDLAPV--SRSMRTYAVAWVHPNR------KLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHW- 86 (510)
Q Consensus 16 VISAqdLk~v--~GKmDPYVVV~I~pd~------K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~- 86 (510)
.|+|++|... .+++||||++.+.+.. +++|+|+++ +.||+|||+|.|.+..+ ....|.|+|||++.
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~----~~~~l~~~V~d~d~~ 80 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFE----EVQKLRFEVYDVDSK 80 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeE----eeeEEEEEEEEecCC
Confidence 4899999876 4899999999998754 589999874 99999999999986543 24589999999984
Q ss_pred ---C-CCcceEEEEEeCcccCCCC
Q 041258 87 ---F-RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 87 ---~-gDdlIGeVrVPLsdLl~~~ 106 (510)
+ +|++||++.++|.+|+...
T Consensus 81 ~~~~~~~d~iG~~~i~l~~l~~~~ 104 (120)
T cd04048 81 SKDLSDHDFLGEAECTLGEIVSSP 104 (120)
T ss_pred cCCCCCCcEEEEEEEEHHHHhcCC
Confidence 4 7899999999999998644
No 86
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.55 E-value=2e-14 Score=126.70 Aligned_cols=92 Identities=20% Similarity=0.372 Sum_probs=76.8
Q ss_pred cceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEE
Q 041258 8 PFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEI 81 (510)
Q Consensus 8 P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEV 81 (510)
..+.|.|+|++|++|... .+..||||++.+.+. .+.+|+|.+ ++.||+|||+|.|.+....+ ....|.|+|
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~F~f~i~~~~~--~~~~l~~~v 89 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK-RTLNPVFNESFIFNIPLERL--RETTLIITV 89 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCccee-CCCCCcccceEEEeCCHHHh--CCCEEEEEE
Confidence 357899999999999875 589999999998542 356899886 58999999999999875433 246899999
Q ss_pred EeecCC-CCcceEEEEEeCccc
Q 041258 82 FALHWF-RDMHVGTVRVLVGNL 102 (510)
Q Consensus 82 yD~d~~-gDdlIGeVrVPLsdL 102 (510)
||.+.+ +|++||.+.|++.+.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC
Confidence 999866 689999999999876
No 87
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.54 E-value=3.4e-14 Score=122.94 Aligned_cols=90 Identities=22% Similarity=0.332 Sum_probs=77.8
Q ss_pred ceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEE
Q 041258 9 FQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIF 82 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVy 82 (510)
.+.|+|+|++|++|+.. .+.+||||.+.+.+. .+.+|++.+ ++.||.|||+|.|.+....+ ....|.|+||
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~~~~P~wne~f~f~i~~~~l--~~~~l~~~v~ 89 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK-GTLNPVFNEAFSFDVPAEQL--EEVSLVITVV 89 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCccee-cCCCCeeeeeEEEECCHHHh--CCcEEEEEEE
Confidence 57899999999999986 578999999999764 356899876 58999999999999987644 2578999999
Q ss_pred eecC-CCCcceEEEEEeCcc
Q 041258 83 ALHW-FRDMHVGTVRVLVGN 101 (510)
Q Consensus 83 D~d~-~gDdlIGeVrVPLsd 101 (510)
|.+. .++++||.+.|+|.+
T Consensus 90 d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 90 DKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred ecCCCCCCceeEEEEECCCC
Confidence 9986 478999999999998
No 88
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.53 E-value=6.6e-14 Score=122.26 Aligned_cols=106 Identities=22% Similarity=0.336 Sum_probs=86.1
Q ss_pred eEEEEEEEEecCCCCC--CCCCCcEEEEEEcC----CCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEe
Q 041258 10 QLLELNIISAQDLAPV--SRSMRTYAVAWVHP----NRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFA 83 (510)
Q Consensus 10 gtLEVTVISAqdLk~v--~GKmDPYVVV~I~p----d~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD 83 (510)
+.|.|+|++|++|+.. .+..||||.+.+.+ ..+.+|++.++ +.||.|||+|.|.+.... ....|.|+|||
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~---~~~~l~v~v~d 88 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPAD---KDRRLSIEVWD 88 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchh---cCCEEEEEEEE
Confidence 7899999999999875 47899999999974 25789999764 899999999999987643 24689999999
Q ss_pred ecCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCC-CCC
Q 041258 84 LHWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRP-SGR 132 (510)
Q Consensus 84 ~d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrp-SGK 132 (510)
.+.+ .+++||.+.++|.++.... ...||+|... .|.
T Consensus 89 ~~~~~~~~~iG~~~~~l~~l~~~~-------------~~~w~~L~~~~~~~ 126 (131)
T cd04026 89 WDRTTRNDFMGSLSFGVSELIKMP-------------VDGWYKLLNQEEGE 126 (131)
T ss_pred CCCCCCcceeEEEEEeHHHhCcCc-------------cCceEECcCccccc
Confidence 9855 7899999999999998532 2348898753 444
No 89
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=7.2e-14 Score=146.96 Aligned_cols=125 Identities=22% Similarity=0.395 Sum_probs=102.5
Q ss_pred cceEEEEEEEEecCCCCCC--CCCCcEEEEEEcCC--CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEe
Q 041258 8 PFQLLELNIISAQDLAPVS--RSMRTYAVAWVHPN--RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFA 83 (510)
Q Consensus 8 P~gtLEVTVISAqdLk~v~--GKmDPYVVV~I~pd--~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD 83 (510)
....|.|+|+.|++|.... +..||||.+++.|+ .+.+|+|++ +++||+|||+|.|.|....+ ....|.|.|||
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r-~tlnP~fnEtf~f~v~~~~l--~~~~L~l~V~~ 241 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHR-KTLNPVFNETFRFEVPYEEL--SNRVLHLSVYD 241 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeee-cCcCCccccceEeecCHHHh--ccCEEEEEEEe
Confidence 3568999999999999874 67999999999997 478999987 59999999999999988766 47899999999
Q ss_pred ecCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCC---CCCcceEEEEEEEEeeCC
Q 041258 84 LHWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRP---SGRPQGILNIGVALLDSS 147 (510)
Q Consensus 84 ~d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrp---SGKpqG~LnLsV~f~d~s 147 (510)
+|.| ++++||++.|+|..+-... ....|+++... .....|+|-|+++|.+..
T Consensus 242 ~drfsr~~~iGev~~~l~~~~~~~------------~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~ 297 (421)
T KOG1028|consen 242 FDRFSRHDFIGEVILPLGEVDLLS------------TTLFWKDLQPSSTDSEELAGELLLSLCYLPTA 297 (421)
T ss_pred cCCcccccEEEEEEecCccccccc------------cceeeeccccccCCcccccceEEEEEEeecCC
Confidence 9965 8999999999988775433 12346777542 222338999999999974
No 90
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.52 E-value=8.4e-14 Score=122.14 Aligned_cols=89 Identities=13% Similarity=0.215 Sum_probs=74.7
Q ss_pred EEEEEEEEecCCCCC--CCCCCcEEEEEEcCCC-eeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC
Q 041258 11 LLELNIISAQDLAPV--SRSMRTYAVAWVHPNR-KLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF 87 (510)
Q Consensus 11 tLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~-K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~ 87 (510)
.|+|+|++|++|+.. .+++||||++.+++.. +.+|.+.++ +.||+|||+|.|.+... ....|.|+|||++.+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~----~~~~L~~~V~d~d~~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLP----GNSILKISVMDYDLL 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCC----CCCEEEEEEEECCCC
Confidence 389999999999986 4899999999997542 357777664 99999999999998653 256899999999866
Q ss_pred -CCcceEEEEEeCcccCC
Q 041258 88 -RDMHVGTVRVLVGNLIP 104 (510)
Q Consensus 88 -gDdlIGeVrVPLsdLl~ 104 (510)
+|++||++.|+|.+.+-
T Consensus 76 ~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCceeEEEEEeeccccc
Confidence 79999999999998874
No 91
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.51 E-value=4.4e-14 Score=169.19 Aligned_cols=124 Identities=15% Similarity=0.232 Sum_probs=104.6
Q ss_pred ccccceEEEEEEEEecCCCCCCCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEee
Q 041258 5 ILAPFQLLELNIISAQDLAPVSRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFAL 84 (510)
Q Consensus 5 ~~~P~gtLEVTVISAqdLk~v~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~ 84 (510)
|..-.|.|.|+|++|++|+..++.+||||++.++...+.+|+|+++ +.||+|||.|.|.+++.. ....|+|+|||+
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~-~~nP~Wne~f~~~~~~p~---~~~~l~iev~d~ 2050 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSH-SSSPEWKEGFTWAFDSPP---KGQKLHISCKSK 2050 (2102)
T ss_pred HhhCCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCC-CCCCCcccceeeeecCCC---CCCceEEEEEec
Confidence 5566799999999999999667999999999997555889999975 999999999999888763 246799999999
Q ss_pred cCCCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceE---EEEEEEEee
Q 041258 85 HWFRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGI---LNIGVALLD 145 (510)
Q Consensus 85 d~~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~---LnLsV~f~d 145 (510)
|.|+++.+|.+.|+|.+++.++. ...+|+|. ++|+..|. |.|.++|.+
T Consensus 2051 d~f~kd~~G~~~i~l~~vv~~~~------------~~~~~~L~-~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 NTFGKSSLGKVTIQIDRVVMEGT------------YSGEYSLN-PESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CccCCCCCceEEEEHHHHhcCce------------eeeeeecC-cccccCCCcceEEEEEEecC
Confidence 98888899999999999997662 22478886 56778888 999988854
No 92
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.49 E-value=1.6e-13 Score=122.81 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=67.3
Q ss_pred EEEEEEEecCCCCCCCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeec--
Q 041258 12 LELNIISAQDLAPVSRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALH-- 85 (510)
Q Consensus 12 LEVTVISAqdLk~v~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d-- 85 (510)
|+|+|++|+||+ +..||||++.+++. .+++|+++++ +.||+|||+|.|.|+. ...|.|.|||.+
T Consensus 1 L~V~V~~A~~L~---~~sDPYV~l~v~~~~~~~~~~KTk~i~~-TlnPvWnE~F~i~l~~------s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK---QSANLYCTLEVDSFGYFVKKAKTRVCRD-TTEPNWNEEFEIELEG------SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC---CCCCCEEEEEEcCccccceeeeeeeecC-CCCCccceEEEEEeCC------CCEEEEEEEEcccc
Confidence 789999999997 45899999999763 4689999964 9999999999999974 358999999973
Q ss_pred -----C-CCCcceEEEEEeCc
Q 041258 86 -----W-FRDMHVGTVRVLVG 100 (510)
Q Consensus 86 -----~-~gDdlIGeVrVPLs 100 (510)
. ..|++||.+.|.|.
T Consensus 71 ~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 71 KVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred cccccccCcccEEEEEEEEEC
Confidence 2 36899999988875
No 93
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.48 E-value=2.3e-13 Score=106.74 Aligned_cols=80 Identities=29% Similarity=0.503 Sum_probs=69.1
Q ss_pred EEEEEEEecCCCCC--CCCCCcEEEEEEcCCC--eeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC
Q 041258 12 LELNIISAQDLAPV--SRSMRTYAVAWVHPNR--KLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF 87 (510)
Q Consensus 12 LEVTVISAqdLk~v--~GKmDPYVVV~I~pd~--K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~ 87 (510)
|+|+|++|++|... .+..||||++.+.+.. .++|++..+ +.+|.|||+|.|.+....+ ..|.|+|||.+.+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~----~~l~~~V~~~~~~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDL----DSLSFEVWDKDSF 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCG----TEEEEEEEEETSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccc----cceEEEEEECCCC
Confidence 89999999999985 4789999999998754 489999875 7999999999999877643 3599999999977
Q ss_pred C-CcceEEEE
Q 041258 88 R-DMHVGTVR 96 (510)
Q Consensus 88 g-DdlIGeVr 96 (510)
+ |++||+|+
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 5 99999985
No 94
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.44 E-value=4.5e-13 Score=122.19 Aligned_cols=92 Identities=18% Similarity=0.301 Sum_probs=75.9
Q ss_pred ccceEEEEEEEEecCCCCCC--CCCCcEEEEEEcCC----CeeEeeecCCCC-CCceeceEEEEEecCCCCCCCCceEEE
Q 041258 7 APFQLLELNIISAQDLAPVS--RSMRTYAVAWVHPN----RKLSTRVDAHGR-NNPTWNDKFVFRVDEDFLHNDTSAVMI 79 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v~--GKmDPYVVV~I~pd----~K~rTrVdr~Gg-~NPvWNEkF~F~V~e~~L~~~~s~L~V 79 (510)
+..+.|.|+|++|++|++.. +.+||||.|++.+. .|++|+|.++ + .||+|||+|.|+|+.+. ....|.|
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~---~~v~l~v 86 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQE---HGIQFLI 86 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchh---heeEEEE
Confidence 44678999999999999863 66799999998753 3778998764 5 46999999999999753 2578999
Q ss_pred EEEeecCC-CCcceEEEEEeCccc
Q 041258 80 EIFALHWF-RDMHVGTVRVLVGNL 102 (510)
Q Consensus 80 EVyD~d~~-gDdlIGeVrVPLsdL 102 (510)
+|||++.. ++++||.+.+.....
T Consensus 87 ~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 87 KLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EEEeCCCCcCCceEEEEEECCccC
Confidence 99998754 899999999998764
No 95
>PLN02270 phospholipase D alpha
Probab=99.43 E-value=1.4e-12 Score=145.65 Aligned_cols=129 Identities=12% Similarity=0.147 Sum_probs=108.9
Q ss_pred ceEEEEEEEEecCCCCC--------------------CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCC
Q 041258 9 FQLLELNIISAQDLAPV--------------------SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDED 68 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v--------------------~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~ 68 (510)
.|+|+|+|++|++|++. .+.+||||+|.+.+.+..+|+|..+-..||+|||.|.++|++.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 58999999999999862 1356999999998888899999976567999999999999986
Q ss_pred CCCCCCceEEEEEEeecCCCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCc---ceEEEEEEEEee
Q 041258 69 FLHNDTSAVMIEIFALHWFRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRP---QGILNIGVALLD 145 (510)
Q Consensus 69 ~L~~~~s~L~VEVyD~d~~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKp---qG~LnLsV~f~d 145 (510)
.+.|+|.|+|.+.++..+||.+.||+.+|+.+.. -..|++|...+||| ..+|+|.++|.+
T Consensus 87 -----~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~------------i~~~~~~~~~~~~p~~~~~~~~~~~~f~~ 149 (808)
T PLN02270 87 -----ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEE------------VDRWVEILDNDKNPIHGGSKIHVKLQYFE 149 (808)
T ss_pred -----cceEEEEEecCCccCceEEEEEEEEHHHhcCCCc------------cccEEeccCCCCCcCCCCCEEEEEEEEEE
Confidence 5789999999999999999999999999998652 12379999888886 239999999999
Q ss_pred CCCcCCCCccc
Q 041258 146 SSMRSMPLYTQ 156 (510)
Q Consensus 146 ~smrs~P~y~~ 156 (510)
... .|.|..
T Consensus 150 ~~~--~~~~~~ 158 (808)
T PLN02270 150 VTK--DRNWGR 158 (808)
T ss_pred ccc--Ccchhc
Confidence 765 565654
No 96
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.42 E-value=1.1e-12 Score=111.19 Aligned_cols=91 Identities=13% Similarity=0.170 Sum_probs=71.8
Q ss_pred EEEEEecCCCCC--CCCCCcEEEEEEcCCC-----eeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecC
Q 041258 14 LNIISAQDLAPV--SRSMRTYAVAWVHPNR-----KLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHW 86 (510)
Q Consensus 14 VTVISAqdLk~v--~GKmDPYVVV~I~pd~-----K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~ 86 (510)
+-.++|++|+.. .+++||||++.+.+.. +++|+|.++ +.||+|| .|.|.+..-...+....|.|+|||++.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 446799999976 4899999999987642 589999875 8999999 688876431111125699999999986
Q ss_pred C-CCcceEEEEEeCcccCCCC
Q 041258 87 F-RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 87 ~-gDdlIGeVrVPLsdLl~~~ 106 (510)
+ +|++||++.++|.+|+...
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcCC
Confidence 6 7899999999999998543
No 97
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.31 E-value=2e-11 Score=96.61 Aligned_cols=91 Identities=27% Similarity=0.437 Sum_probs=77.6
Q ss_pred EEEEEEEEecCCCCCC--CCCCcEEEEEEcCC--CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecC
Q 041258 11 LLELNIISAQDLAPVS--RSMRTYAVAWVHPN--RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHW 86 (510)
Q Consensus 11 tLEVTVISAqdLk~v~--GKmDPYVVV~I~pd--~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~ 86 (510)
+|.|+|++|++|.... ...+|||.+.+.+. ...+|++..+ ..||.|||.|.|.+.... ...|.|+|||...
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~----~~~l~i~v~~~~~ 75 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKN-TLNPVWNETFEFEVPPPE----LAELEIEVYDKDR 75 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecC-CCCCcccceEEEEecCcc----cCEEEEEEEecCC
Confidence 4789999999998763 57999999999875 5789998764 679999999999998752 5799999999875
Q ss_pred C-CCcceEEEEEeCcccCCCC
Q 041258 87 F-RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 87 ~-gDdlIGeVrVPLsdLl~~~ 106 (510)
. .+.+||.+.++|.++..+.
T Consensus 76 ~~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 76 FGRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ccCCceeEEEEEEHHHcccCc
Confidence 5 5899999999999997654
No 98
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.24 E-value=5.5e-11 Score=92.71 Aligned_cols=87 Identities=24% Similarity=0.493 Sum_probs=75.1
Q ss_pred EEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-C
Q 041258 12 LELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF-R 88 (510)
Q Consensus 12 LEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~-g 88 (510)
|.|.|++|++|... ....+|||++.+.+....+|++.. +..||.||+.|.|.+... ....|.|+||+.+.. .
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~-~~~~P~w~~~~~~~~~~~----~~~~l~i~v~~~~~~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVK-NTLNPVWNETFEFPVLDP----ESDTLTVEVWDKDRFSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeC-CCCCCcccceEEEEccCC----CCCEEEEEEEecCCCCC
Confidence 57999999999874 478999999999765788999886 478999999999999873 256899999999865 5
Q ss_pred CcceEEEEEeCcccC
Q 041258 89 DMHVGTVRVLVGNLI 103 (510)
Q Consensus 89 DdlIGeVrVPLsdLl 103 (510)
+++||.+.+++.++.
T Consensus 76 ~~~ig~~~~~l~~l~ 90 (102)
T cd00030 76 DDFLGEVEIPLSELL 90 (102)
T ss_pred CceeEEEEEeHHHhh
Confidence 899999999999997
No 99
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.23 E-value=5.2e-11 Score=108.37 Aligned_cols=92 Identities=18% Similarity=0.316 Sum_probs=77.6
Q ss_pred EEEEEEEecCCCCC----CCC--CCcEEEEEEcCC--CeeEeeecCCCCCC--ceeceEEEEEecC--------------
Q 041258 12 LELNIISAQDLAPV----SRS--MRTYAVAWVHPN--RKLSTRVDAHGRNN--PTWNDKFVFRVDE-------------- 67 (510)
Q Consensus 12 LEVTVISAqdLk~v----~GK--mDPYVVV~I~pd--~K~rTrVdr~Gg~N--PvWNEkF~F~V~e-------------- 67 (510)
|+|.|..|+++... .+. +||||.+|+.+. .+++|.|+.+ .+| |+||+.|.|+++.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 89999999996542 354 899999999984 6899999985 888 9999999999877
Q ss_pred -------CCCCCCCceEEEEEEeecCC-CCcceEEEEEeCcccCCCC
Q 041258 68 -------DFLHNDTSAVMIEIFALHWF-RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 68 -------~~L~~~~s~L~VEVyD~d~~-gDdlIGeVrVPLsdLl~~~ 106 (510)
..+ ....|+|+|||.|.+ .|++||++.++|..+..+.
T Consensus 81 ~~~~~~~e~~--~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYK--IPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEe--cCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 333 357999999999965 7999999999999887654
No 100
>PLN02223 phosphoinositide phospholipase C
Probab=99.21 E-value=1.2e-10 Score=126.15 Aligned_cols=104 Identities=19% Similarity=0.301 Sum_probs=83.6
Q ss_pred eEEEEEEEEecCCCCC-------CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEE
Q 041258 10 QLLELNIISAQDLAPV-------SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVM 78 (510)
Q Consensus 10 gtLEVTVISAqdLk~v-------~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~ 78 (510)
.+|.|+||+|++|... ....||||.|.|.|- .+.+|.|. +++.||+|||+|.|.|...+| ..|.
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~-nNg~nPvWne~F~F~i~~PEL----AlLr 483 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVK-NNEWKPTWGEEFTFPLTYPDL----ALIS 483 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeC-CCCcCceecceeEEEEEccCc----eEEE
Confidence 6899999999997421 246899999999763 35678765 569999999999999877643 5899
Q ss_pred EEEEeecCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCc
Q 041258 79 IEIFALHWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRP 133 (510)
Q Consensus 79 VEVyD~d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKp 133 (510)
|+|+|+|.. +|++||.+.+||..|-.+- + +++|+...|.+
T Consensus 484 f~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy-------------R--~VpL~~~~g~~ 524 (537)
T PLN02223 484 FEVYDYEVSTADAFCGQTCLPVSELIEGI-------------R--AVPLYDERGKA 524 (537)
T ss_pred EEEEecCCCCCCcEEEEEecchHHhcCCc-------------e--eEeccCCCcCC
Confidence 999999965 7899999999999987543 2 56888777765
No 101
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.20 E-value=1.3e-11 Score=130.51 Aligned_cols=94 Identities=22% Similarity=0.394 Sum_probs=83.2
Q ss_pred ceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEE
Q 041258 9 FQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIF 82 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVy 82 (510)
...|.|+|..|++|.++ +|.+||||.+.+.|+ .|++|++++. ++||+|||+|+|.+.++. -+..|.||||
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~D---kdrRlsiEvW 254 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSD---KDRRLSIEVW 254 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEeccccc---ccceeEEEEe
Confidence 45799999999999987 699999999999886 4789998874 999999999999998874 3689999999
Q ss_pred eec-CCCCcceEEEEEeCcccCCCC
Q 041258 83 ALH-WFRDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 83 D~d-~~gDdlIGeVrVPLsdLl~~~ 106 (510)
|+| .++++++|...+-+++|...+
T Consensus 255 DWDrTsRNDFMGslSFgisEl~K~p 279 (683)
T KOG0696|consen 255 DWDRTSRNDFMGSLSFGISELQKAP 279 (683)
T ss_pred cccccccccccceecccHHHHhhcc
Confidence 998 569999999999999998755
No 102
>PLN02952 phosphoinositide phospholipase C
Probab=99.19 E-value=1.8e-10 Score=126.37 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=93.0
Q ss_pred ceEEEEEEEEecCCCCCC--------CCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCce
Q 041258 9 FQLLELNIISAQDLAPVS--------RSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSA 76 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v~--------GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~ 76 (510)
..+|.|+||+|++|+... ...||||.|.|.|- .+.+|+++.+ +.||+|||+|.|.|.... -..
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~n-N~nPvWnE~F~F~i~~PE----LAl 543 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIED-NWYPAWNEEFSFPLTVPE----LAL 543 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccC-CCCcccCCeeEEEEEcCC----ccE
Confidence 468999999999985421 24599999999862 5779999876 499999999999987754 358
Q ss_pred EEEEEEeecCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEEe
Q 041258 77 VMIEIFALHWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVALL 144 (510)
Q Consensus 77 L~VEVyD~d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f~ 144 (510)
|.|+|+|+|.+ .|++||.+.|||..|..+- + +++|+...|+.-+.+.|-|+|.
T Consensus 544 lrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy-------------R--~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 544 LRIEVREYDMSEKDDFGGQTCLPVSELRPGI-------------R--SVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred EEEEEEecCCCCCCCeEEEEEcchhHhcCCc-------------e--eEeCcCCCCCCCCCEEEEEEEE
Confidence 99999999865 7899999999999997543 3 5788878888877777777663
No 103
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.11 E-value=3.2e-10 Score=129.86 Aligned_cols=122 Identities=19% Similarity=0.303 Sum_probs=101.0
Q ss_pred cceEEEEEEEEecCCCCC----CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEe
Q 041258 8 PFQLLELNIISAQDLAPV----SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFA 83 (510)
Q Consensus 8 P~gtLEVTVISAqdLk~v----~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD 83 (510)
+.|.|+|+|.+|++|+.. .+..|||+++....--..+|+|.+ +..||+|||+|.+.|..- .+.|.++|||
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~-nt~nPvwNEt~Yi~lns~-----~d~L~LslyD 507 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKK-NTLNPVWNETFYILLNSF-----TDPLNLSLYD 507 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceee-ccCCccccceEEEEeccc-----CCceeEEEEe
Confidence 579999999999999975 489999999998654566999986 499999999999999852 6789999999
Q ss_pred ec-CCCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEEeeCC
Q 041258 84 LH-WFRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVALLDSS 147 (510)
Q Consensus 84 ~d-~~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f~d~s 147 (510)
.+ ...|+++|++.++|..|...+. + ...-|++.+ +.+..|.|++.++|.+.-
T Consensus 508 ~n~~~sd~vvG~~~l~L~~L~~~~~---~--------~ne~~e~~~-~~k~vGrL~yDl~ffp~~ 560 (1227)
T COG5038 508 FNSFKSDKVVGSTQLDLALLHQNPV---K--------KNELYEFLR-NTKNVGRLTYDLRFFPVI 560 (1227)
T ss_pred ccccCCcceeeeEEechHHhhhccc---c--------ccceeeeec-cCccceEEEEeeeeeccc
Confidence 76 5589999999999999986542 1 112466654 779999999999999864
No 104
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.05 E-value=1.1e-09 Score=120.17 Aligned_cols=115 Identities=13% Similarity=0.149 Sum_probs=87.9
Q ss_pred ceEEEEEEEEecCCCCC--------CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCce
Q 041258 9 FQLLELNIISAQDLAPV--------SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSA 76 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v--------~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~ 76 (510)
..+|.|+|++++++... ....||||.|.|.+- .+.+|+|..+ +-||+|||+|.|.|...+| ..
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n-~~nP~Wneef~F~l~vPEL----Al 542 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYD-TWTPIWNKEFIFPLAVPEL----AL 542 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCC-CCCCccCCeeEEEEEcCce----eE
Confidence 46899999999987422 134799999999862 3578998754 8999999999999876644 69
Q ss_pred EEEEEEeecC-CCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCc--ceEEEEEEEE
Q 041258 77 VMIEIFALHW-FRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRP--QGILNIGVAL 143 (510)
Q Consensus 77 L~VEVyD~d~-~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKp--qG~LnLsV~f 143 (510)
|.|+|+|++. .+|++||...|||..|-.+- + ..+|+...|.+ .-.|-+.+.|
T Consensus 543 lRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-------------R--~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 543 LRVEVHEHDINEKDDFGGQTCLPVSEIRQGI-------------H--AVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEEEEECCCCCCCCEEEEEEcchHHhhCcc-------------c--eEeccCCCcCCCCCCeeEEEEEe
Confidence 9999999986 48999999999999997543 3 46887777754 2344444443
No 105
>PLN02352 phospholipase D epsilon
Probab=99.02 E-value=1.8e-09 Score=120.75 Aligned_cols=123 Identities=15% Similarity=0.230 Sum_probs=97.6
Q ss_pred ceEEEEEEEEecCCCCCC-------CCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEE
Q 041258 9 FQLLELNIISAQDLAPVS-------RSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEI 81 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v~-------GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEV 81 (510)
.|+|+|+|.+|+-+...+ ...||||+|.+.+.+..+| . +..||+|||.|.++|++.. .+.|+|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~-~~~~p~w~e~f~i~~ah~~----~~~~~f~v 80 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---S-HEYDRVWNQTFQILCAHPL----DSTITITL 80 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---C-CCCCCccccceeEEeeeec----CCcEEEEE
Confidence 589999999998544321 1229999999988778888 2 3569999999999999852 35799999
Q ss_pred EeecCCCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCc-c-eEEEEEEEEeeCCCcCCCCccc
Q 041258 82 FALHWFRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRP-Q-GILNIGVALLDSSMRSMPLYTQ 156 (510)
Q Consensus 82 yD~d~~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKp-q-G~LnLsV~f~d~smrs~P~y~~ 156 (510)
+| +..+||.+.||+.+|+.+.. ....|++|...+||| + .+|+|.++|.++.+ .|.|..
T Consensus 81 k~----~~~~ig~~~~p~~~~~~g~~-----------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~ 140 (758)
T PLN02352 81 KT----KCSILGRFHIQAHQIVTEAS-----------FINGFFPLIMENGKPNPELKLRFMLWFRPAEL--EPTWCK 140 (758)
T ss_pred ec----CCeEEEEEEEEHHHhhCCCc-----------ccceEEEcccCCCCCCCCCEEEEEEEEEEhhh--Ccchhh
Confidence 98 68899999999999998652 123489999888876 4 49999999999876 666654
No 106
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.00 E-value=9.3e-10 Score=126.12 Aligned_cols=97 Identities=16% Similarity=0.266 Sum_probs=86.3
Q ss_pred ccccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEE
Q 041258 5 ILAPFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIF 82 (510)
Q Consensus 5 ~~~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVy 82 (510)
|..+.+.|+|.+++|++|+.. ++..||||++.+.....++|+++++ ++||+|||.|.++|... ....|+|.|+
T Consensus 1035 mv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~Kk-tlNPvwNEe~~i~v~~r----~~D~~~i~v~ 1109 (1227)
T COG5038 1035 MVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKK-TLNPVWNEEFTIEVLNR----VKDVLTINVN 1109 (1227)
T ss_pred eecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhc-cCCCCccccceEeeecc----ccceEEEEEe
Confidence 445579999999999999987 4889999999998777889999986 99999999999999975 3579999999
Q ss_pred eecCC-CCcceEEEEEeCcccCCCC
Q 041258 83 ALHWF-RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 83 D~d~~-gDdlIGeVrVPLsdLl~~~ 106 (510)
|++.. ++++||.+.|+|..|.++.
T Consensus 1110 Dwd~~~knd~lg~~~idL~~l~~~~ 1134 (1227)
T COG5038 1110 DWDSGEKNDLLGTAEIDLSKLEPGG 1134 (1227)
T ss_pred ecccCCCccccccccccHhhcCcCC
Confidence 99866 8899999999999998766
No 107
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.00 E-value=3.9e-09 Score=115.58 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=87.4
Q ss_pred ceEEEEEEEEecCCCC----C----CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCce
Q 041258 9 FQLLELNIISAQDLAP----V----SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSA 76 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~----v----~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~ 76 (510)
..+|.|+|++++++.- . ....||||.|.|.+- .+.+|+++.++ .||+|||+|.|.|...+ -..
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn-~nP~W~e~f~F~i~~Pe----LAl 525 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDN-WIPAWDEVFEFPLTVPE----LAL 525 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCC-CCcccCCeeEEEEEcCc----eeE
Confidence 4579999999998532 1 145799999999752 46799998764 79999999999987654 369
Q ss_pred EEEEEEeecCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCc--ceEEEEEEEE
Q 041258 77 VMIEIFALHWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRP--QGILNIGVAL 143 (510)
Q Consensus 77 L~VEVyD~d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKp--qG~LnLsV~f 143 (510)
|.|+|+|+|.. +|++||...|||..|-.+- + .++|+...|.+ ...|-+.+.|
T Consensus 526 lRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy-------------R--~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 526 LRLEVHEYDMSEKDDFGGQTCLPVWELSQGI-------------R--AFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEEEEECCCCCCCcEEEEEEcchhhhhCcc-------------c--eEEccCCCcCCCCCeeEEEEEEe
Confidence 99999999854 7999999999999987543 3 46887777754 3345554443
No 108
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=8.3e-10 Score=120.71 Aligned_cols=125 Identities=20% Similarity=0.290 Sum_probs=96.5
Q ss_pred eEEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeec-C
Q 041258 10 QLLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALH-W 86 (510)
Q Consensus 10 gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d-~ 86 (510)
-.+.+||+.||+|... .|++||||++.++ ..+.+|+++. +.+||+|||+|.|.+..+ ...|.|.|||++ .
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~-ktkrrtrti~-~~lnpvw~ekfhfechns-----tdrikvrvwded~d 367 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVG-KTKRRTRTIH-QELNPVWNEKFHFECHNS-----TDRIKVRVWDEDND 367 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeec-ccchhhHhhh-hccchhhhhheeeeecCC-----CceeEEEEecCccc
Confidence 3689999999999765 4999999999995 5788999875 699999999999999885 578999999985 2
Q ss_pred C-----------CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCC--CCCcceEEEEEEEEeeCCCcCCCC
Q 041258 87 F-----------RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRP--SGRPQGILNIGVALLDSSMRSMPL 153 (510)
Q Consensus 87 ~-----------gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrp--SGKpqG~LnLsV~f~d~smrs~P~ 153 (510)
+ .|+|+|..-|-+..|-. . -.+||.|.+. ..-..|.|+|.|.+.-.+-+...+
T Consensus 368 lksklrqkl~resddflgqtvievrtlsg-e-------------mdvwynlekrtdksavsgairlhisveikgeekvap 433 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLSG-E-------------MDVWYNLEKRTDKSAVSGAIRLHISVEIKGEEKVAP 433 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEeccc-c-------------hhhhcchhhccchhhccceEEEEEEEEEcCcccccc
Confidence 2 58999999998886642 1 2368888643 234578887777766655545555
Q ss_pred cc
Q 041258 154 YT 155 (510)
Q Consensus 154 y~ 155 (510)
|-
T Consensus 434 yh 435 (1283)
T KOG1011|consen 434 YH 435 (1283)
T ss_pred ce
Confidence 53
No 109
>PLN02228 Phosphoinositide phospholipase C
Probab=98.97 E-value=5.1e-09 Score=114.47 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=91.8
Q ss_pred eEEEEEEEEecCCCCC--------CCCCCcEEEEEEcCC----CeeEeeecCCCCCCcee-ceEEEEEecCCCCCCCCce
Q 041258 10 QLLELNIISAQDLAPV--------SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTW-NDKFVFRVDEDFLHNDTSA 76 (510)
Q Consensus 10 gtLEVTVISAqdLk~v--------~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvW-NEkF~F~V~e~~L~~~~s~ 76 (510)
.+|.|+||+|++|.-. ....||||.|.|.+- .+.+|++.++ +.||+| ||+|.|.+...+| ..
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n-~~nP~W~~e~f~F~~~~pEL----A~ 505 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVD-QWFPIWGNDEFLFQLRVPEL----AL 505 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCC-CCCceECCCeEEEEEEcCce----eE
Confidence 4799999999998321 134899999999763 4679999866 589999 9999999876544 69
Q ss_pred EEEEEEeecC-CCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCc--ceEEEEEEEEeeC
Q 041258 77 VMIEIFALHW-FRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRP--QGILNIGVALLDS 146 (510)
Q Consensus 77 L~VEVyD~d~-~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKp--qG~LnLsV~f~d~ 146 (510)
|.|+|+|++. ..|++||.+.|||..|-.+- + .++|+...|.. ...|-+.+.+.+.
T Consensus 506 lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY-------------R--~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 506 LWFKVQDYDNDTQNDFAGQTCLPLPELKSGV-------------R--AVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEEEEEeCCCCCCCCEEEEEEcchhHhhCCe-------------e--EEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 9999999984 48999999999999986432 3 46888777764 5578888877653
No 110
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.95 E-value=1.6e-09 Score=96.33 Aligned_cols=85 Identities=20% Similarity=0.325 Sum_probs=72.0
Q ss_pred EEEEEEEecCCCCC-----CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecC
Q 041258 12 LELNIISAQDLAPV-----SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHW 86 (510)
Q Consensus 12 LEVTVISAqdLk~v-----~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~ 86 (510)
|+|+|.+|+||... ++++||||++.++...+.+|++. .||+|||.|.|+|+. ...+.|.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s----rnd~WnE~F~i~Vdk------~nEiel~VyDk~~ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS----RNDRWNEDFEIPVEK------NNEEEVIVYDKGG 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC----CCCcccceEEEEecC------CcEEEEEEEeCCC
Confidence 78999999999875 37889999999986668999875 699999999999954 4579999999865
Q ss_pred CCCcceEEEEEeCcccCCCC
Q 041258 87 FRDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 87 ~gDdlIGeVrVPLsdLl~~~ 106 (510)
-..-.||..=|+|++++..-
T Consensus 71 ~~~~Pi~llW~~~sdi~Ee~ 90 (109)
T cd08689 71 DQPVPVGLLWLRLSDIAEEI 90 (109)
T ss_pred CeecceeeehhhHHHHHHHH
Confidence 56679999999999997643
No 111
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.94 E-value=4.1e-09 Score=117.03 Aligned_cols=117 Identities=20% Similarity=0.319 Sum_probs=94.0
Q ss_pred eEEEEEEEEecCCCCCC------CCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEE
Q 041258 10 QLLELNIISAQDLAPVS------RSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMI 79 (510)
Q Consensus 10 gtLEVTVISAqdLk~v~------GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~V 79 (510)
.+|.|.|+++|++...+ ...||||.|.|.|- .+.+|+|..+++-||.|+|+|.|+|..++| ..|.|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL----AliRF 691 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL----ALIRF 691 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce----eEEEE
Confidence 37999999999776642 45799999999763 477999777889999999999999988765 58999
Q ss_pred EEEeecCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCC--cceEEEEEEEEee
Q 041258 80 EIFALHWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGR--PQGILNIGVALLD 145 (510)
Q Consensus 80 EVyD~d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGK--pqG~LnLsV~f~d 145 (510)
+|+|++.. +|+|+|...+|+..|..+- + ..+|....|. ..-.|-+.+++.+
T Consensus 692 ~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy-------------R--hVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 692 EVHDYDYIGKDDFIGQTTLPVSELRQGY-------------R--HVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred EEEecCCCCcccccceeeccHHHhhCce-------------e--eeeecCCCCccccceeEEEEEEEec
Confidence 99999977 5999999999999997643 2 4677765665 3556777776654
No 112
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=2.8e-09 Score=112.62 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=77.6
Q ss_pred ccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEE
Q 041258 7 APFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIE 80 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VE 80 (510)
++.+.|+|.|+.|++|+.. .+..||||.+++... .|++|.+.+ +..||+|||+|.|.|+...|. ...|.|+
T Consensus 295 p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~-~~~npv~nesf~F~vp~~~l~--~~~l~l~ 371 (421)
T KOG1028|consen 295 PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKK-KTLNPVFNETFVFDVPPEQLA--EVSLELT 371 (421)
T ss_pred cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeeccc-CCCCCcccccEEEeCCHHHhh--eeEEEEE
Confidence 4468999999999999976 478999999998654 367888765 599999999999999988774 6899999
Q ss_pred EEeecCC-CCcceEEEEEeCcc
Q 041258 81 IFALHWF-RDMHVGTVRVLVGN 101 (510)
Q Consensus 81 VyD~d~~-gDdlIGeVrVPLsd 101 (510)
|||++.+ .+++||.+.+-...
T Consensus 372 V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 372 VWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEEcccccccceeeEEEecCCC
Confidence 9999977 57799988877664
No 113
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.79 E-value=1.5e-08 Score=111.78 Aligned_cols=123 Identities=20% Similarity=0.248 Sum_probs=104.4
Q ss_pred ceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecC
Q 041258 9 FQLLELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHW 86 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~ 86 (510)
...|.|.|.+|++|+.. .+..||||+|.++-+...+|.++.+ ++.|.|-|.|.|.|+..| ..|.|=|||.|.
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F-----~~l~fYv~D~d~ 77 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTF-----RYLSFYVWDRDL 77 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcce-----eeEEEEEecccc
Confidence 46799999999999876 5889999999998777889998875 999999999999999986 479999999996
Q ss_pred CCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEEeeCC
Q 041258 87 FRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVALLDSS 147 (510)
Q Consensus 87 ~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f~d~s 147 (510)
.+|+.||.+-|.=.+|..-+ ...-|++++-..++...||+|+|.+++.+..
T Consensus 78 ~~D~~IGKvai~re~l~~~~----------~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~ 128 (800)
T KOG2059|consen 78 KRDDIIGKVAIKREDLHMYP----------GKDTWFSLQPVDPDSEVQGKVHLELALTEAI 128 (800)
T ss_pred ccccccceeeeeHHHHhhCC----------CCccceeccccCCChhhceeEEEEEEecccc
Confidence 68999999999877775422 2235666666678899999999999998864
No 114
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.55 E-value=2.2e-07 Score=104.16 Aligned_cols=91 Identities=18% Similarity=0.282 Sum_probs=75.8
Q ss_pred eEEEEEEEEecCCCCCC-CCCCcEEEEEEcCC----CeeEeeecCCCCCCceec-eEEEEEecCCCCCCCCceEEEEEEe
Q 041258 10 QLLELNIISAQDLAPVS-RSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWN-DKFVFRVDEDFLHNDTSAVMIEIFA 83 (510)
Q Consensus 10 gtLEVTVISAqdLk~v~-GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWN-EkF~F~V~e~~L~~~~s~L~VEVyD 83 (510)
.+|.|.||.|+.|.... +-.-|||.|.|-|. .+++|.++.++|+||+|| |+|.|.|..+. -..|.|.||+
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe----~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE----FAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc----eEEEEEEEec
Confidence 57999999999999764 44569999998663 466666666789999999 99999998874 3699999999
Q ss_pred ecCCCC-cceEEEEEeCcccCC
Q 041258 84 LHWFRD-MHVGTVRVLVGNLIP 104 (510)
Q Consensus 84 ~d~~gD-dlIGeVrVPLsdLl~ 104 (510)
.|.|+| .|||.+.+|+..+-.
T Consensus 1141 eDmfs~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1141 EDMFSDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred ccccCCcceeeeeecchhhhhc
Confidence 998865 699999999997753
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.47 E-value=5.3e-08 Score=107.97 Aligned_cols=94 Identities=18% Similarity=0.343 Sum_probs=82.1
Q ss_pred ceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC------CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEE
Q 041258 9 FQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN------RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIE 80 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd------~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VE 80 (510)
.++|-|.|+.|+|+-+. +|.+||||++.+.|. ..++|+|+.. ++||+++|.|.|.|+.+....+...|.|+
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCccccccccceEEEE
Confidence 46788899999999876 699999999999886 3579999875 99999999999999987665567899999
Q ss_pred EEeecCC-CCcceEEEEEeCcccC
Q 041258 81 IFALHWF-RDMHVGTVRVLVGNLI 103 (510)
Q Consensus 81 VyD~d~~-gDdlIGeVrVPLsdLl 103 (510)
|+|.|++ .++|-|++.+-|.++-
T Consensus 1025 VMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred eeccceecccccchHHHHhhCCCC
Confidence 9999988 6899999999998874
No 116
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.29 E-value=2e-06 Score=94.11 Aligned_cols=132 Identities=18% Similarity=0.169 Sum_probs=101.3
Q ss_pred eEEEEEEEEecCCCCCC---CCCCcEEEEEEcCCCeeEeeecCCCCCCceece-EEEEEecCCCCCCCCceEEEEEEeec
Q 041258 10 QLLELNIISAQDLAPVS---RSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWND-KFVFRVDEDFLHNDTSAVMIEIFALH 85 (510)
Q Consensus 10 gtLEVTVISAqdLk~v~---GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNE-kF~F~V~e~~L~~~~s~L~VEVyD~d 85 (510)
+.|-|.|..|+.|+.+. ...|.||.+.+. +..++|.|..+ .+||.||. -|.|.|++..|+ +..|+|.+.|++
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~-n~t~ktdvf~k-slnp~wnsdwfkfevddadlq--deplqi~lld~d 78 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFA-NTTFKTDVFLK-SLNPQWNSDWFKFEVDDADLQ--DEPLQIRLLDHD 78 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEec-ccceehhhhhh-hcCCcccccceEEecChhhhc--cCCeeEEEeccc
Confidence 68999999999999873 567999999985 67889999876 99999995 599999999885 678999999998
Q ss_pred C-CCCcceEEEEEeCcccCCCCCC-CCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEEeeCCC
Q 041258 86 W-FRDMHVGTVRVLVGNLIPPPTR-SLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVALLDSSM 148 (510)
Q Consensus 86 ~-~gDdlIGeVrVPLsdLl~~~~R-~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f~d~sm 148 (510)
. ..++-||.+.|.+..|.-...- ..|. ....---|+++..-=.-.+|+||+.|++.=..+
T Consensus 79 tysandaigkv~i~idpl~~e~aaqavhg---kgtvisgw~pifdtihgirgeinvivkvdlfnd 140 (1169)
T KOG1031|consen 79 TYSANDAIGKVNIDIDPLCLEEAAQAVHG---KGTVISGWFPIFDTIHGIRGEINVIVKVDLFND 140 (1169)
T ss_pred ccccccccceeeeccChHHHHhHHhhhcC---CceEEeeeeecceecccccceeEEEEEEeehhh
Confidence 4 5789999999999988654321 1111 011122488887543346899999998665543
No 117
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.29 E-value=1.5e-07 Score=104.61 Aligned_cols=126 Identities=21% Similarity=0.376 Sum_probs=95.1
Q ss_pred cccceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCe------------------------------eEeeecCCCCC
Q 041258 6 LAPFQLLELNIISAQDLAPV--SRSMRTYAVAWVHPNRK------------------------------LSTRVDAHGRN 53 (510)
Q Consensus 6 ~~P~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K------------------------------~rTrVdr~Gg~ 53 (510)
-+|.-.|.|.+..|+||... +|.+||||...+.|..+ +.|.|.. .++
T Consensus 110 k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~-~TL 188 (1103)
T KOG1328|consen 110 KPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKK-KTL 188 (1103)
T ss_pred CCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccc-ccC
Confidence 34555678888999999764 69999999987765311 2456654 499
Q ss_pred CceeceEEEEEecCCCCCCCCceEEEEEEeecCC-------------------------------------CCcceEEEE
Q 041258 54 NPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF-------------------------------------RDMHVGTVR 96 (510)
Q Consensus 54 NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~-------------------------------------gDdlIGeVr 96 (510)
||.|||+|.|.|++- .++.+++.|||.|.- .|+|+|-+.
T Consensus 189 nPkW~EkF~F~IeDv----~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciN 264 (1103)
T KOG1328|consen 189 NPKWSEKFQFTIEDV----QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCIN 264 (1103)
T ss_pred Ccchhhheeeehhcc----ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccc
Confidence 999999999999885 478999999997520 278999999
Q ss_pred EeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEEeeCC
Q 041258 97 VLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVALLDSS 147 (510)
Q Consensus 97 VPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f~d~s 147 (510)
|||.++-+.+. .+|+.++-+-...+.+|.++|.+++.-..
T Consensus 265 ipl~EiP~~Gl-----------d~WFkLepRS~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 265 IPLAEIPPDGL-----------DQWFKLEPRSDKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred cchhcCCcchH-----------HHHhccCcccccccccceEEEEEEEeeec
Confidence 99999866442 36656665544568899999999876543
No 118
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.77 E-value=4.6e-05 Score=85.05 Aligned_cols=123 Identities=19% Similarity=0.325 Sum_probs=82.8
Q ss_pred EEEEEEecCCCCC-CCCCCcEEEEEEcCCC---eeEeeecCCCCCCceeceEEEEEecCCC-----------CCCCCceE
Q 041258 13 ELNIISAQDLAPV-SRSMRTYAVAWVHPNR---KLSTRVDAHGRNNPTWNDKFVFRVDEDF-----------LHNDTSAV 77 (510)
Q Consensus 13 EVTVISAqdLk~v-~GKmDPYVVV~I~pd~---K~rTrVdr~Gg~NPvWNEkF~F~V~e~~-----------L~~~~s~L 77 (510)
...++.++++-+. ++.+||||++...+.. ..+|++.++ +.||.|||.|.|.+..+. -+.+-..|
T Consensus 134 ~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i 212 (800)
T KOG2059|consen 134 VCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI 212 (800)
T ss_pred hhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence 3344455555554 5779999988776542 357888765 999999999999987651 01124678
Q ss_pred EEEEEee-c-CCCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEee-CCCC------CcceEEEEEEEEeeCCC
Q 041258 78 MIEIFAL-H-WFRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVR-RPSG------RPQGILNIGVALLDSSM 148 (510)
Q Consensus 78 ~VEVyD~-d-~~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLr-rpSG------KpqG~LnLsV~f~d~sm 148 (510)
.|++|+. + ...++++|+++||+..+-... .... ||-|+ ++.| ---|.|++.+.+.....
T Consensus 213 rv~lW~~~~~~~~~~FlGevrv~v~~~~~~s----------~p~~--W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~V 280 (800)
T KOG2059|consen 213 RVDLWNDLNLVINDVFLGEVRVPVDVLRQKS----------SPAA--WYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHV 280 (800)
T ss_pred EEeeccchhhhhhhhhceeEEeehhhhhhcc----------Cccc--eEEEecCCCcccCCCCCCccceeeeEEeeecee
Confidence 8888884 3 336999999999999776222 1113 55554 2332 34688899998888654
No 119
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=6.8e-06 Score=85.17 Aligned_cols=126 Identities=18% Similarity=0.254 Sum_probs=90.4
Q ss_pred ceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEE-ecCCCCCCCCceEEEEE
Q 041258 9 FQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFR-VDEDFLHNDTSAVMIEI 81 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~-V~e~~L~~~~s~L~VEV 81 (510)
.+.|..||.-|++|+++ .+..|||+...++|. .+++|++.+ ++.||.|||+.++. |..+.. ....+.+.|
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~-n~lN~~w~etev~~~i~~~~~--~~K~~Rk~v 168 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTR-NTLNPEWNETEVYEGITDDDT--HLKVLRKVV 168 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhc-cCcCcceeccceecccccchh--hhhhhheee
Confidence 35789999999999998 489999999999875 467778775 59999999987764 333322 467889999
Q ss_pred EeecCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEee--C---CCCCcceEEEEEEEEee
Q 041258 82 FALHWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVR--R---PSGRPQGILNIGVALLD 145 (510)
Q Consensus 82 yD~d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLr--r---pSGKpqG~LnLsV~f~d 145 (510)
+|.+.+ .++++|+.+|+|..|.+...+ ..-.|+..++- + ++-..+|.|.+++.|-.
T Consensus 169 cdn~~~~~~~sqGq~r~~lkKl~p~q~k--------~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s 230 (362)
T KOG1013|consen 169 CDNDKKTHNESQGQSRVSLKKLKPLQRK--------SFNICLEKSLPSERADRDEDEERGAILISLAYSS 230 (362)
T ss_pred ccCcccccccCcccchhhhhccChhhcc--------hhhhhhhccCCcccccccchhhccceeeeeccCc
Confidence 998744 789999999999999876521 11122222221 1 12256788877777544
No 120
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.69 E-value=3.2e-05 Score=89.94 Aligned_cols=93 Identities=18% Similarity=0.349 Sum_probs=77.9
Q ss_pred ceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEE-ecCCCCCCCCceEEEEE
Q 041258 9 FQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFR-VDEDFLHNDTSAVMIEI 81 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~-V~e~~L~~~~s~L~VEV 81 (510)
-++|.|-|..|++|.-. ...+||||..++.|+ .|.+|+|.++ +.||++||.+.+. .+-+.+ .+..|.+.|
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l--~qReLQ~sV 1599 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEIL--QQRELQVSV 1599 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhhh--hhheeeeee
Confidence 46899999999999654 367999999999987 3789999985 9999999999987 555444 367899999
Q ss_pred EeecCC-CCcceEEEEEeCcccCC
Q 041258 82 FALHWF-RDMHVGTVRVLVGNLIP 104 (510)
Q Consensus 82 yD~d~~-gDdlIGeVrVPLsdLl~ 104 (510)
+..+.+ .+.++|.+.|||.++--
T Consensus 1600 ls~~~~~en~~lg~v~i~L~~~~l 1623 (1639)
T KOG0905|consen 1600 LSNGGLLENVFLGGVNIPLLKVDL 1623 (1639)
T ss_pred ecccceeeeeeeeeeecchhhcch
Confidence 998755 78999999999998854
No 121
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.00094 Score=74.60 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=83.0
Q ss_pred eEEEEEEEEecCCCCC-CCCCCcEEEEEEcCC------CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEE
Q 041258 10 QLLELNIISAQDLAPV-SRSMRTYAVAWVHPN------RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIF 82 (510)
Q Consensus 10 gtLEVTVISAqdLk~v-~GKmDPYVVV~I~pd------~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVy 82 (510)
..++|.|+.|.||+=. .+--.|||.|.|-|. +|..|+.. .|+--|.+||+|.|.+..+.- .+.-.|.|.|.
T Consensus 1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtK-snnWaPKyNEtF~f~Lg~e~~-Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTK-SNNWAPKYNETFHFFLGNEGG-PEHYELQFCVK 1202 (1283)
T ss_pred ceEEEEEEecccccchhccccccceEEEEecCcccchhhhcccccc-CCCcCcccCceeEEEeccCCC-CceEEEEEeeh
Confidence 4689999999999865 567799999988542 46778765 468889999999999976532 24678999999
Q ss_pred eecCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeC
Q 041258 83 ALHWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRR 128 (510)
Q Consensus 83 D~d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrr 128 (510)
|+=+- .|+.||.+.++|.++...+. .-.|+||-+
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS------------~a~W~pLgr 1237 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGS------------CACWVPLGR 1237 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCc------------eeEeeeccc
Confidence 88766 57899999999999987552 345888854
No 122
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.23 E-value=0.0012 Score=75.82 Aligned_cols=87 Identities=24% Similarity=0.304 Sum_probs=69.2
Q ss_pred eEEEEEEEEecCCCCCCCCCCcEEEEEEcCC------CeeEeeecCCCCCCceece-EEEEE-ecCCCCCCCCceEEEEE
Q 041258 10 QLLELNIISAQDLAPVSRSMRTYAVAWVHPN------RKLSTRVDAHGRNNPTWND-KFVFR-VDEDFLHNDTSAVMIEI 81 (510)
Q Consensus 10 gtLEVTVISAqdLk~v~GKmDPYVVV~I~pd------~K~rTrVdr~Gg~NPvWNE-kF~F~-V~e~~L~~~~s~L~VEV 81 (510)
.+|.|+|||++=|-+ .+...||.|.+.+- ..++|++...++.||+||| .|+|. |--.. -..|+|.|
T Consensus 703 ~t~sV~VISgqFLSd--rkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpe----LA~lRiav 776 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSD--RKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPE----LASLRIAV 776 (1189)
T ss_pred eeEEEEEEeeeeccc--cccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccc----hhheeeee
Confidence 579999999998865 55679999998652 3679999999999999997 69986 33222 46899999
Q ss_pred EeecCCCCcceEEEEEeCcccCCC
Q 041258 82 FALHWFRDMHVGTVRVLVGNLIPP 105 (510)
Q Consensus 82 yD~d~~gDdlIGeVrVPLsdLl~~ 105 (510)
|+. +.++||.--+||.-|-++
T Consensus 777 yeE---ggK~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 777 YEE---GGKFIGQRILPVDGLNAG 797 (1189)
T ss_pred ecc---CCceeeeeccchhcccCc
Confidence 987 567999988998877653
No 123
>PLN02964 phosphatidylserine decarboxylase
Probab=97.22 E-value=0.00052 Score=76.88 Aligned_cols=88 Identities=11% Similarity=0.235 Sum_probs=71.1
Q ss_pred ceEEEEEEEEecCCCCCCCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-
Q 041258 9 FQLLELNIISAQDLAPVSRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF- 87 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~- 87 (510)
.+.+.|||++|+ +.. .|+|.++...+.+..+|.+.+ .+.||+||+...|.|....+ ...+|.|+|.+.+
T Consensus 53 ~~~~~~~~~~~~----~~~-~~~~~~~~~~g~~~f~t~~~~-~~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~s 122 (644)
T PLN02964 53 SGIALLTLVGAE----MKF-KDKWLACVSFGEQTFRTETSD-STDKPVWNSEKKLLLEKNGP----HLARISVFETNRLS 122 (644)
T ss_pred cCeEEEEeehhh----hcc-CCcEEEEEEecceeeeecccc-ccCCcccchhhceEeccCCc----ceEEEEEEecCCCC
Confidence 467889999997 323 388876665678999999875 59999999999998887643 3569999999865
Q ss_pred CCcceEEEEEeCcccCCCC
Q 041258 88 RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 88 gDdlIGeVrVPLsdLl~~~ 106 (510)
.++++|.|.++|.++....
T Consensus 123 ~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred HHHhhhheeecHhhccHHH
Confidence 7999999999999887654
No 124
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.20 E-value=0.00044 Score=60.87 Aligned_cols=89 Identities=17% Similarity=0.248 Sum_probs=69.1
Q ss_pred EEEEEEecCCCCCC---CCCCcEEE--EEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC
Q 041258 13 ELNIISAQDLAPVS---RSMRTYAV--AWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF 87 (510)
Q Consensus 13 EVTVISAqdLk~v~---GKmDPYVV--V~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~ 87 (510)
=|||+.++||--.. ..+..|+. +.+...-..+|.+. .|..||+++|+|+|.|....|. +..|.|.||. ..-
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~r-rgs~d~~f~ETFVFqi~l~qL~--~V~L~fsv~~-~~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAK-EGSNDIEFMETFVFAIKLQNLQ--TVRLVFKIQT-QTP 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhh-cCCCChhHHHHHHHHHHHhhcc--ceEEEEEeec-cCC
Confidence 37999999997653 45777885 44433346678764 5899999999999999887774 7889999998 444
Q ss_pred CCcceEEEEEeCcccCCC
Q 041258 88 RDMHVGTVRVLVGNLIPP 105 (510)
Q Consensus 88 gDdlIGeVrVPLsdLl~~ 105 (510)
+.+.||++.+.|.++-.+
T Consensus 78 RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 78 RKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred ccceeeEEEeecccCCHH
Confidence 789999999999987543
No 125
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.16 E-value=0.02 Score=50.85 Aligned_cols=125 Identities=15% Similarity=0.226 Sum_probs=84.5
Q ss_pred ceEEEEEEEEecCCCCCCCCCCcEEEEEEcCCCe---eEeeecCCCCCCceeceEEEEEec----CCCCCCCCceEEEEE
Q 041258 9 FQLLELNIISAQDLAPVSRSMRTYAVAWVHPNRK---LSTRVDAHGRNNPTWNDKFVFRVD----EDFLHNDTSAVMIEI 81 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v~GKmDPYVVV~I~pd~K---~rTrVdr~Gg~NPvWNEkF~F~V~----e~~L~~~~s~L~VEV 81 (510)
--.+.|+|+..++++. ....+.+.|-.++.. .+|.........=.|||.|.|.+. .....-+...+.|.|
T Consensus 6 kf~~~l~i~~l~~~p~---~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS---SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred eEEEEEEEEEeECcCC---CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 3468899999999986 445566677666653 456544444567789999998752 211111467899999
Q ss_pred EeecCCCC-cceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEEeeCC
Q 041258 82 FALHWFRD-MHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVALLDSS 147 (510)
Q Consensus 82 yD~d~~gD-dlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f~d~s 147 (510)
+.....+. ..||++.|.|++++.... ......++|... -+....|+|+|.+....
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~----------~~~~~~~~l~~~-~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDE----------EPITVRLLLKKC-KKSNATLSISISLSELR 138 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCC----------CcEEEEEeCccC-CCCCcEEEEEEEEEECc
Confidence 88754433 599999999999997531 124456777542 35677888888877654
No 126
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.12 E-value=0.00031 Score=80.90 Aligned_cols=92 Identities=15% Similarity=0.229 Sum_probs=73.9
Q ss_pred ceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCCCe-eEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeec
Q 041258 9 FQLLELNIISAQDLAPV--SRSMRTYAVAWVHPNRK-LSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALH 85 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K-~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d 85 (510)
...++|.|+.|.+|.+. +|+.|||+.+.+++... -++.-+. ++.||++++-|.+.+.-.+ ...|.++|||+|
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip-~tlnPVfgkmfel~~~lp~----ek~l~v~vyd~D 686 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIP-NTLNPVFGKMFELECLLPF----EKDLIVEVYDHD 686 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCc-CCCCcHHHHHHHhhcccch----hhcceeEEEEee
Confidence 45789999999999987 59999999999975421 2444444 5999999999888766553 578999999999
Q ss_pred CC-CCcceEEEEEeCcccCCC
Q 041258 86 WF-RDMHVGTVRVLVGNLIPP 105 (510)
Q Consensus 86 ~~-gDdlIGeVrVPLsdLl~~ 105 (510)
.+ +|+.||+.+|.|.+=...
T Consensus 687 ~~~~d~~iget~iDLEnR~~T 707 (1105)
T KOG1326|consen 687 LEAQDEKIGETTIDLENRWLT 707 (1105)
T ss_pred cccccchhhceehhhhhcccC
Confidence 66 699999999999876553
No 127
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.0024 Score=66.83 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=74.1
Q ss_pred ceEEEEEEEEecCCCCC--CCCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEE
Q 041258 9 FQLLELNIISAQDLAPV--SRSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIF 82 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v--~GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVy 82 (510)
..-|.|+++-+..|..+ ++..||||..++.++ .+++|.+.++ +.||++|+.|.|.+.+..| ....|.|.|+
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdL--a~~kv~lsvg 308 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDL--AYKKVALSVG 308 (362)
T ss_pred CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCccch--hcceEEEeec
Confidence 45689999999999876 589999999999876 3778888765 9999999999999999887 4788999999
Q ss_pred eecCC-CCcceEEEEEeCc
Q 041258 83 ALHWF-RDMHVGTVRVLVG 100 (510)
Q Consensus 83 D~d~~-gDdlIGeVrVPLs 100 (510)
|++.. ..+++|-+..-+.
T Consensus 309 d~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 309 DYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred ccCCCcCccCCCccccccc
Confidence 99866 6788887655443
No 128
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.57 E-value=0.013 Score=55.60 Aligned_cols=74 Identities=19% Similarity=0.375 Sum_probs=54.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCcEEEEEEc-CCCee----EeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEee
Q 041258 10 QLLELNIISAQDLAPVSRSMRTYAVAWVH-PNRKL----STRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFAL 84 (510)
Q Consensus 10 gtLEVTVISAqdLk~v~GKmDPYVVV~I~-pd~K~----rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~ 84 (510)
..+.|+|+++.+|.-.....+.||.+.|. +...+ .|+... ....+.|||.+.|+|.-..|. ....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLP-r~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLP-RMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcCC-hhHeEEEEEEEe
Confidence 46899999999998534567888887654 33322 454332 356799999999998877775 457999999987
Q ss_pred c
Q 041258 85 H 85 (510)
Q Consensus 85 d 85 (510)
.
T Consensus 86 ~ 86 (173)
T cd08693 86 S 86 (173)
T ss_pred c
Confidence 4
No 129
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=96.53 E-value=0.0015 Score=60.88 Aligned_cols=92 Identities=22% Similarity=0.411 Sum_probs=68.8
Q ss_pred EEEEEEEecCCCCCC-------C--------CCCcEEEEEE--cCC-CeeEeeecCCCCCCceeceEEEEEec-------
Q 041258 12 LELNIISAQDLAPVS-------R--------SMRTYAVAWV--HPN-RKLSTRVDAHGRNNPTWNDKFVFRVD------- 66 (510)
Q Consensus 12 LEVTVISAqdLk~v~-------G--------KmDPYVVV~I--~pd-~K~rTrVdr~Gg~NPvWNEkF~F~V~------- 66 (510)
|.|.|+.|-||+... . --++||++.+ .++ .+.+||+... +--|.||..|.|+++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCC
Confidence 578899999998631 1 2488998884 343 4678887764 899999999999987
Q ss_pred -C-----CCCCCCCceEEEEEEeec-----------CCCCcceEEEEEeCcccCCCC
Q 041258 67 -E-----DFLHNDTSAVMIEIFALH-----------WFRDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 67 -e-----~~L~~~~s~L~VEVyD~d-----------~~gDdlIGeVrVPLsdLl~~~ 106 (510)
+ +.| +...+.|+||... ..+|-+||+++||+.+|+..-
T Consensus 80 Ge~~sLAElL--e~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r 134 (143)
T cd08683 80 GEAISLAELL--ESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR 134 (143)
T ss_pred CccccHHHHh--hcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence 2 122 2568999999874 126779999999999998643
No 130
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.44 E-value=0.017 Score=52.99 Aligned_cols=91 Identities=18% Similarity=0.205 Sum_probs=65.7
Q ss_pred eEEEEEEEEecCCCC-CCCCCCcEEEEEEcC-CC----eeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEe
Q 041258 10 QLLELNIISAQDLAP-VSRSMRTYAVAWVHP-NR----KLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFA 83 (510)
Q Consensus 10 gtLEVTVISAqdLk~-v~GKmDPYVVV~I~p-d~----K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD 83 (510)
..|.|.|..+.++.. .....+-||.+.+.. .+ ...|.... ...++.|||.+.|++.-..|. ....|.|.||+
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~-~~~~~~Wne~l~F~i~~~~LP-~~arL~itl~~ 85 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVP-FSTSVTWNEWLTFDILISDLP-REARLCLSIYA 85 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCc-CCCCCcccceeEccchhhcCC-hhheEEEEEEE
Confidence 357888999888875 345678888887643 22 23444332 247899999999998766665 45799999999
Q ss_pred ecCC---CCcceEEEEEeCccc
Q 041258 84 LHWF---RDMHVGTVRVLVGNL 102 (510)
Q Consensus 84 ~d~~---gDdlIGeVrVPLsdL 102 (510)
.... .+..||.+.++|=+.
T Consensus 86 ~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 86 VSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EecCCCCcceEEEEEeEEeEcc
Confidence 8644 358999999998764
No 131
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.36 E-value=0.022 Score=53.69 Aligned_cols=88 Identities=14% Similarity=0.146 Sum_probs=61.6
Q ss_pred eEEEEEEEEecCCCCCCCCCCcEEEEEEcC-CCee----EeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEee
Q 041258 10 QLLELNIISAQDLAPVSRSMRTYAVAWVHP-NRKL----STRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFAL 84 (510)
Q Consensus 10 gtLEVTVISAqdLk~v~GKmDPYVVV~I~p-d~K~----rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~ 84 (510)
+.|.|.|++|.++.-. ...|-||.+.|.. .+.+ .|+-.. ..++.|||-+.|+|.-..|. -...|.|.||+.
T Consensus 8 ~~~~v~i~~~~~~~~~-~~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLP-r~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN-DIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLP-RSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC-CcCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCC-hhheEEEEEEEE
Confidence 4689999999988743 4568999887643 3222 233222 36899999999998877775 457999999997
Q ss_pred cCC-----CCcceEEEEEeCcc
Q 041258 85 HWF-----RDMHVGTVRVLVGN 101 (510)
Q Consensus 85 d~~-----gDdlIGeVrVPLsd 101 (510)
..- ....||.+.++|-+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred ecccCCCCceEEEEEEEEEEEC
Confidence 532 12457777777665
No 132
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.83 E-value=0.0083 Score=64.57 Aligned_cols=121 Identities=21% Similarity=0.233 Sum_probs=86.8
Q ss_pred eEEEEEEEEecCCCCCCCC--CCcEEEEEEc----CCCeeEeeecCCCCCCceeceEEEEEecCCCC-CC------CCce
Q 041258 10 QLLELNIISAQDLAPVSRS--MRTYAVAWVH----PNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFL-HN------DTSA 76 (510)
Q Consensus 10 gtLEVTVISAqdLk~v~GK--mDPYVVV~I~----pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L-~~------~~s~ 76 (510)
..|++.|+.++++....+. .|.|+.+.+. -.++.+|.|++ ++..|.++|.|.+.+....- .. ....
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik-~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIK-VTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceee-CCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 3578888888888766654 4778876652 22578899986 59999999999999876211 00 1357
Q ss_pred EEEEEEeecCC--CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCC--cceEEEEEEEEee
Q 041258 77 VMIEIFALHWF--RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGR--PQGILNIGVALLD 145 (510)
Q Consensus 77 L~VEVyD~d~~--gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGK--pqG~LnLsV~f~d 145 (510)
+.||||....| .|+|+|++.|-|..|...- ++ ...|+|. +|+ ..|.|.+.|++..
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len~c-----------ei-~e~~~l~--DGRK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMC-----------EI-CEYLPLK--DGRKAVGGKLEVKVRIRQ 504 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhccc-----------ch-hhceecc--ccccccCCeeEEEEEEec
Confidence 89999999744 6899999999998775322 12 2367875 454 4778988888653
No 133
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=95.71 E-value=0.0029 Score=73.30 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=76.8
Q ss_pred EEEEEEEecCCCCC--CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEE-e--cC--CCCCCCCceEEEEEEee
Q 041258 12 LELNIISAQDLAPV--SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFR-V--DE--DFLHNDTSAVMIEIFAL 84 (510)
Q Consensus 12 LEVTVISAqdLk~v--~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~-V--~e--~~L~~~~s~L~VEVyD~ 84 (510)
|++.|.+|+.|... ..-.|||+.+.+. ++-+.|-|.. +++||+||+++.|. | .. ..+...--.++|||||.
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~-~qs~~T~~v~-~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~ 285 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFC-GQSKETEVVP-GTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL 285 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhcc-cccceeEeec-CcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence 55667778887655 4678999988886 4677888775 69999999999995 2 11 11222346889999999
Q ss_pred cCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEE
Q 041258 85 HWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGV 141 (510)
Q Consensus 85 d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV 141 (510)
+.. .++++|+..+-..=....+ +..|+++++ ++...|.+++..
T Consensus 286 dr~g~~ef~gr~~~~p~V~~~~p-------------~lkw~p~~r-g~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 286 DRSGINEFKGRKKQRPYVMVQCP-------------ALKWVPTMR-GAFLDGDVLIAA 329 (1105)
T ss_pred hhhchHHhhcccccceEEEecCC-------------ccceEEeec-ccccccchhHHH
Confidence 855 7899998866544222211 234677765 445555555443
No 134
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=95.44 E-value=0.075 Score=50.02 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=63.1
Q ss_pred ceEEEEEEEEecCCCCCC--CCCCcEEEEEEc-CCCee----EeeecC--C-CCCCceeceEEEEEecCCCCCCCCceEE
Q 041258 9 FQLLELNIISAQDLAPVS--RSMRTYAVAWVH-PNRKL----STRVDA--H-GRNNPTWNDKFVFRVDEDFLHNDTSAVM 78 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v~--GKmDPYVVV~I~-pd~K~----rTrVdr--~-Gg~NPvWNEkF~F~V~e~~L~~~~s~L~ 78 (510)
...|.|+|.+++++.... ...|-||.+.|. +.+.+ .|+... + -...+.|||.+.|++.-..|. -...|.
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LP-rearL~ 85 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLP-RESRLV 85 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCC-hhHEEE
Confidence 346899999999998763 358899988774 33322 443211 1 123677999999998777674 467999
Q ss_pred EEEEeecCCC----------CcceEEEEEeCcc
Q 041258 79 IEIFALHWFR----------DMHVGTVRVLVGN 101 (510)
Q Consensus 79 VEVyD~d~~g----------DdlIGeVrVPLsd 101 (510)
|.||+..... +..||.+.++|=+
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 9999875432 3567777777654
No 135
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=95.24 E-value=0.04 Score=49.08 Aligned_cols=101 Identities=15% Similarity=0.052 Sum_probs=57.6
Q ss_pred EEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCC---CCCCceEEEEEEeecCCCCcceEEEEEeCcccCCCCCC
Q 041258 32 YAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFL---HNDTSAVMIEIFALHWFRDMHVGTVRVLVGNLIPPPTR 108 (510)
Q Consensus 32 YVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L---~~~~s~L~VEVyD~d~~gDdlIGeVrVPLsdLl~~~~R 108 (510)
||.+.+.--..+.|+|.. |.+|..|-+-.|.|.-+.+ +-+...|.||++.......+.||.++|+|..++....
T Consensus 2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~- 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNG- 78 (107)
T ss_dssp EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCC-
Confidence 677777644678999986 8999999998888765532 1125789999987664446899999999999995331
Q ss_pred CCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEEe
Q 041258 109 SLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVALL 144 (510)
Q Consensus 109 ~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f~ 144 (510)
.--.....|...+|..-|.|.+.+++.
T Consensus 79 ---------~~i~~~~~l~g~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 79 ---------ERIHGSATLVGVSGEDFGTLEYWIRLR 105 (107)
T ss_dssp -----------EEEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred ---------ceEEEEEEEeccCCCeEEEEEEEEEec
Confidence 113346777777888999999998864
No 136
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=95.02 E-value=0.36 Score=46.68 Aligned_cols=126 Identities=9% Similarity=0.045 Sum_probs=75.2
Q ss_pred eEEEEEEEEecCCCCC-CCCCCcEEEEEEcCCCe----eEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEee
Q 041258 10 QLLELNIISAQDLAPV-SRSMRTYAVAWVHPNRK----LSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFAL 84 (510)
Q Consensus 10 gtLEVTVISAqdLk~v-~GKmDPYVVV~I~pd~K----~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~ 84 (510)
..++|+|+++..+... ...+..||.+.|..+.. .+|....- +.+|.|||-+.|+|.-..|. ....|.|.||+.
T Consensus 10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP-~~arLc~ti~~~ 87 (178)
T cd08399 10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLP-KGALLNLQIYCG 87 (178)
T ss_pred CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCC-hhhEEEEEEEEE
Confidence 3578899998733221 24466788775542221 24443332 56799999999998877775 467999999997
Q ss_pred cCCC--CcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCC-cceEEEEEEEEeeCCCc
Q 041258 85 HWFR--DMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGR-PQGILNIGVALLDSSMR 149 (510)
Q Consensus 85 d~~g--DdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGK-pqG~LnLsV~f~d~smr 149 (510)
..-+ .+.+|.. +...... . .....|+.+.|....|. .+|...|.+...+..++
T Consensus 88 ~~~~~~~~~~~~~--~~~~~~~-----~-----~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~~~~~~ 143 (178)
T cd08399 88 KAPALSSKKSAES--PSSESKG-----K-----HQLLYYVNLLLIDHRFLLRTGEYVLHMWQISGKGE 143 (178)
T ss_pred ecCcccccccccc--ccccccc-----c-----cceEEEEEEEEEcCCCceecCCEEEEEecCCCccc
Confidence 4221 1222221 1111100 0 02346777788776554 48888888887665554
No 137
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=0.032 Score=59.46 Aligned_cols=103 Identities=14% Similarity=0.156 Sum_probs=76.4
Q ss_pred ceEEEEEEEEecCCCCCC---CCCCcEEEEEEcCC----CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEE
Q 041258 9 FQLLELNIISAQDLAPVS---RSMRTYAVAWVHPN----RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEI 81 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v~---GKmDPYVVV~I~pd----~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEV 81 (510)
-+.|+|.||.|++|.... ..++|||.|++.+. .+.+|+..++ +..|-+-+.+.|.-... ...|.+.|
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~k-T~~plyqq~l~f~~sp~-----~k~Lq~tv 341 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARK-TLDPLYQQQLSFDQSPP-----GKYLQGTV 341 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccc-cCchhhhhhhhhccCCC-----ccEEEEEE
Confidence 478999999999998652 36899999998765 3778888775 55554445677766553 68999999
Q ss_pred Eee-cCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeC
Q 041258 82 FAL-HWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRR 128 (510)
Q Consensus 82 yD~-d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrr 128 (510)
|.. ... .+.|+|.+.|-|.+|--.. .+-..||.|.-
T Consensus 342 ~gdygRmd~k~fmg~aqi~l~eL~ls~-----------~~~igwyKlfg 379 (405)
T KOG2060|consen 342 WGDYGRMDHKSFMGVAQIMLDELNLSS-----------SPVIGWYKLFG 379 (405)
T ss_pred eccccccchHHHhhHHHHHhhhhcccc-----------ccceeeeeccC
Confidence 953 333 6789999999999886433 13455898864
No 138
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.54 E-value=0.13 Score=48.44 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=53.7
Q ss_pred CCCCcEEEEEEcCC-Cee----EeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-CCcceEEEEEeCc
Q 041258 27 RSMRTYAVAWVHPN-RKL----STRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF-RDMHVGTVRVLVG 100 (510)
Q Consensus 27 GKmDPYVVV~I~pd-~K~----rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~-gDdlIGeVrVPLs 100 (510)
...|-||.+.|-.+ ..+ .|+... -+..+.|||-+.|+|.-..|. -.+.|.|.||+.... ...+||.+.++|=
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~-f~~~~~WnEwl~fpI~i~dLP-~~a~L~iti~~~~~~~~~~~vg~~~~~lF 105 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKP-FKNRRNWNEWLTLPIKYSDLP-RNSQLAITIWDVSGTGKAVPFGGTTLSLF 105 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccC-CCCCcccceeEEcccchhcCC-hhheEEEEEEEecCCCCceEEEEEEEeeE
Confidence 45789998876433 222 443332 356789999999999887775 467999999998644 4678999999876
Q ss_pred cc
Q 041258 101 NL 102 (510)
Q Consensus 101 dL 102 (510)
+.
T Consensus 106 d~ 107 (159)
T cd08397 106 NK 107 (159)
T ss_pred CC
Confidence 54
No 139
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.46 E-value=0.74 Score=43.94 Aligned_cols=130 Identities=14% Similarity=0.220 Sum_probs=88.3
Q ss_pred ccceEEEEEEEEecCCCCC-C---CCCCcEEEEEEc-CCCeeEeeecCCCCCCceeceEEEEEecCCCCC---------C
Q 041258 7 APFQLLELNIISAQDLAPV-S---RSMRTYAVAWVH-PNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLH---------N 72 (510)
Q Consensus 7 ~P~gtLEVTVISAqdLk~v-~---GKmDPYVVV~I~-pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~---------~ 72 (510)
+-...|.|.|..++-.-.. . +..+.-.++.++ .+++++|+.+. -.-+|.++|.|.|.+..+... .
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVP-CACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcc-cccCCCCCCcEEEEecccccccccchhHhhc
Confidence 3367899999998755432 1 344444444443 46899998765 489999999999999876411 1
Q ss_pred CCceEEEEEEeecCC-CCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCC---CcceEEEEEEEEeeCC
Q 041258 73 DTSAVMIEIFALHWF-RDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSG---RPQGILNIGVALLDSS 147 (510)
Q Consensus 73 ~~s~L~VEVyD~d~~-gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSG---KpqG~LnLsV~f~d~s 147 (510)
....|++.|...+.. ...++|.-.+.=..++..+. ..-.++.+|..... -+.|+|+|.+.+.+..
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~----------~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN----------GSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhccCC----------CccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 235677777776655 34788888888777776552 11245667764332 3899999999988753
No 140
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=93.82 E-value=0.23 Score=45.08 Aligned_cols=72 Identities=13% Similarity=0.221 Sum_probs=47.9
Q ss_pred CcEEEEEEc-CCCe-----eEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCCC-C----cceEEEEEe
Q 041258 30 RTYAVAWVH-PNRK-----LSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWFR-D----MHVGTVRVL 98 (510)
Q Consensus 30 DPYVVV~I~-pd~K-----~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~g-D----dlIGeVrVP 98 (510)
+.||.+.|. +++. ..|++..-...++.|||.+.|+|.-..|. ....|.|.||+..... + ..||.+.++
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LP-r~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~ 81 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLP-REARLCFTLYGVDSKKKSKKKKVPLGWVNLP 81 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS--TTEEEEEEEEEEECSTTT--EEEEEEEEEEE
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCC-hhHeEEEEEEEecCCCccccceeEEEEEEEE
Confidence 456666653 3332 24544332126999999999998777675 4579999999987553 3 699999999
Q ss_pred Cccc
Q 041258 99 VGNL 102 (510)
Q Consensus 99 LsdL 102 (510)
|=+.
T Consensus 82 lFd~ 85 (142)
T PF00792_consen 82 LFDY 85 (142)
T ss_dssp SB-T
T ss_pred eECC
Confidence 8765
No 141
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.03 E-value=0.2 Score=52.84 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=79.4
Q ss_pred ceEEEEEEEEecCCCCC----CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEee
Q 041258 9 FQLLELNIISAQDLAPV----SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFAL 84 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v----~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~ 84 (510)
.|.|-|++...++|+-. .-.-+-||++..+..++.+|+|- .++.-=.|.|.|..+|-. ...|.+-||.+
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vr-s~~~~f~w~e~F~~Dvv~------~~vl~~lvySW 122 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVR-SSGPGFAWAEDFKHDVVN------IEVLHYLVYSW 122 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeeecccCccccccc-cCCCCccchhhceeeccc------ceeeeEEEeec
Confidence 57899999999999865 23568999999887778888875 467777899999998765 35789999998
Q ss_pred cC-CCCc--ceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEEEeeC
Q 041258 85 HW-FRDM--HVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVALLDS 146 (510)
Q Consensus 85 d~-~gDd--lIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~f~d~ 146 (510)
+. ++++ ..| -+.+..+..+. .++.+++-| .|+|.+-|.+.+.|-
T Consensus 123 ~pq~RHKLC~~g--~l~~~~v~rqs-----------pd~~~Al~l-----ePrgq~~~r~~~~Dp 169 (442)
T KOG1452|consen 123 PPQRRHKLCHLG--LLEAFVVDRQS-----------PDRVVALYL-----EPRGQPPLRLPLADP 169 (442)
T ss_pred Cchhhccccccc--hhhhhhhhhcC-----------Ccceeeeec-----ccCCCCceecccCCh
Confidence 73 4454 355 22222222222 123345544 588888888887774
No 142
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=91.99 E-value=0.62 Score=44.02 Aligned_cols=57 Identities=14% Similarity=0.305 Sum_probs=35.1
Q ss_pred eeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC--CC--cceEEEEEeCcc
Q 041258 42 KLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF--RD--MHVGTVRVLVGN 101 (510)
Q Consensus 42 K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~--gD--dlIGeVrVPLsd 101 (510)
...|.|... ..+|.|||+|.+.|+.... +...|.|++|+...- ++ ..+|.+-+||-+
T Consensus 60 ~~~S~v~yh-~k~P~f~deiKi~LP~~l~--~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYH-NKNPQFNDEIKIQLPPDLF--PKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT--SS-EEEEEEEEEE-CCCC--TTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEec-CCCCCccEEEEEEcCchhc--ccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 446666653 6899999999999998753 467999999987422 22 699999999887
No 143
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=91.38 E-value=1.5 Score=39.03 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=45.5
Q ss_pred CCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCCCCcceEEEEEeCccc
Q 041258 29 MRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWFRDMHVGTVRVLVGNL 102 (510)
Q Consensus 29 mDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~gDdlIGeVrVPLsdL 102 (510)
.+..|++-++......|.-.. -.+..|+++|.|.++-+ ..|.|.||-.|+- .+=|...+-|.+.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~--~s~q~WDQ~Fti~LdRs------RELEI~VywrD~R--slCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP--KSNQAWDQSFTLELERS------RELEIAVYWRDWR--SLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccccc--cccccccceeEEEeecc------cEEEEEEEEecch--hhhhheeeEhhhh
Confidence 678889998755566776433 35788999999999874 6899999976542 2445555666663
No 144
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=90.11 E-value=0.46 Score=52.82 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=55.0
Q ss_pred CCCCCcEEEEEEc--CC---CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-CCcceEEEEEeC
Q 041258 26 SRSMRTYAVAWVH--PN---RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF-RDMHVGTVRVLV 99 (510)
Q Consensus 26 ~GKmDPYVVV~I~--pd---~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~-gDdlIGeVrVPL 99 (510)
+++.|||..+.-- .+ ..++|.|.++ ++||.|-. |.+.+..---......+.+++||++.. ++++||++..++
T Consensus 154 f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~ 231 (529)
T KOG1327|consen 154 FSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTL 231 (529)
T ss_pred cccCCcceEEEEecCCCceeeccccceecc-CCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccH
Confidence 5899999976532 22 3568888764 99999976 444333221112357889999999865 569999999999
Q ss_pred cccCC
Q 041258 100 GNLIP 104 (510)
Q Consensus 100 sdLl~ 104 (510)
.++..
T Consensus 232 ~~~~~ 236 (529)
T KOG1327|consen 232 SELQE 236 (529)
T ss_pred HHhcc
Confidence 98864
No 145
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=88.59 E-value=1.2 Score=43.73 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=39.0
Q ss_pred eeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC--CC-cceEEEEEeC
Q 041258 42 KLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF--RD-MHVGTVRVLV 99 (510)
Q Consensus 42 K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~--gD-dlIGeVrVPL 99 (510)
..+|-|... ..+|.|||+|.+.|+.+.. ....|.|+++..-.- .+ ..+|-+-+||
T Consensus 54 e~~S~V~yH-~~~P~W~EtiKi~lP~~~~--~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 54 EYRSFVLYH-NNSPRWNETIKLPIPIDKF--RGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred eEEEEEEEc-CCCCCCceeEEEecChhhC--CCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 567777654 7899999999999998754 478899998764321 11 4566666665
No 146
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=88.48 E-value=1.4 Score=41.76 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=39.0
Q ss_pred EeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC------CCcceEEEEEeCcc
Q 041258 44 STRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF------RDMHVGTVRVLVGN 101 (510)
Q Consensus 44 rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~------gDdlIGeVrVPLsd 101 (510)
+|-+. . +.+|.|||+|.+.|+.... +...|.|++|+...- ....+|-+-+||-+
T Consensus 56 ~sv~~-~-~k~p~f~deiKi~LP~~l~--~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVY-Y-HKNPVFNDEIKIQLPADLT--PQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEE-c-CCCCCCceeEEEecCCccC--CCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444 3 3899999999999976643 478999999986522 24678888877764
No 147
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=88.07 E-value=1.3 Score=43.80 Aligned_cols=57 Identities=11% Similarity=0.114 Sum_probs=40.4
Q ss_pred CeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC--CC---cceEEEEEeCc
Q 041258 41 RKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF--RD---MHVGTVRVLVG 100 (510)
Q Consensus 41 ~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~--gD---dlIGeVrVPLs 100 (510)
...+|-|... ..+|.|||+|.+.|+.+.. ....|.|+++..-.. +| ..+|.+-+||-
T Consensus 53 se~~S~V~Yh-~~~P~W~EtIKl~lP~~~~--~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQ-VDKPKWFETFKVAIPIEDF--KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEee-cCCCCCceeEEEecChhhC--CCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 3667777443 5799999999999988754 478999999764321 23 46676666654
No 148
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=86.76 E-value=8.8 Score=40.77 Aligned_cols=127 Identities=14% Similarity=0.192 Sum_probs=88.6
Q ss_pred EEEEEEEecCCCCCCCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCC---CCCceEEEEEEeec--C
Q 041258 12 LELNIISAQDLAPVSRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLH---NDTSAVMIEIFALH--W 86 (510)
Q Consensus 12 LEVTVISAqdLk~v~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~---~~~s~L~VEVyD~d--~ 86 (510)
+-|.|+++++.... .+....+.+.+++ ..+.|-.. .+...|.||..+.+.++-..|. -+...|.++.|..+ .
T Consensus 2 ivl~i~egr~F~~~-~~~~~vv~a~~ng-~~l~TDpv-~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQR-PRHPIVVEAKFNG-ESLETDPV-PHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCC-CCccEEEEEEeCC-ceeeecCC-CCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 56889999888753 3566777888876 46666543 3588999999999998765442 23567889999887 3
Q ss_pred CCCcceEEEEEeCcccCCCCCCCCCCCCCcccceEEEEEeeCCCCC---cceEEEEEEEEeeCCC
Q 041258 87 FRDMHVGTVRVLVGNLIPPPTRSLHHSHRSFGMRFVALQVRRPSGR---PQGILNIGVALLDSSM 148 (510)
Q Consensus 87 ~gDdlIGeVrVPLsdLl~~~~R~~h~~~~~~~~r~vsyqLrrpSGK---pqG~LnLsV~f~d~sm 148 (510)
...+.||.+-++|..++-...+. ......||.|..-+.+ .+-+|.|.+.+.+.+.
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~-------~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKN-------QKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CcceeccEEEEEccccccccccc-------cccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 46789999999999982111110 1123458999764223 4568889999888775
No 149
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.61 E-value=3.7 Score=35.50 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=48.8
Q ss_pred EEEEEEEecCCCCCC-CC-CCcEEEEEEc-CCCee----EeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEee
Q 041258 12 LELNIISAQDLAPVS-RS-MRTYAVAWVH-PNRKL----STRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFAL 84 (510)
Q Consensus 12 LEVTVISAqdLk~v~-GK-mDPYVVV~I~-pd~K~----rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~ 84 (510)
+.+.+..++++.... .. .+-||.+.+. +.+.. .|+.. .....+.|||-+.|+|.-..|. ....|.|.||+.
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~-~~~~~~~Wnewl~f~i~i~~LP-r~a~L~~~i~~~ 90 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYK-PFFPSVKWNEWLTFPIQISDLP-REARLCITIYEV 90 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEeccc-CCCCCcccceeEEccCchhcCC-hhhEEEEEEEEe
Confidence 667777777776542 22 3889988764 33222 34432 2355699999999998877775 457999999986
Q ss_pred c
Q 041258 85 H 85 (510)
Q Consensus 85 d 85 (510)
.
T Consensus 91 ~ 91 (100)
T smart00142 91 K 91 (100)
T ss_pred e
Confidence 3
No 150
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=84.58 E-value=3.6 Score=38.93 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=56.2
Q ss_pred CCCcEEEEEEcCCCeeEeeecCC-CCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCCCCcceEEEEEeCcccCCC
Q 041258 28 SMRTYAVAWVHPNRKLSTRVDAH-GRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWFRDMHVGTVRVLVGNLIPP 105 (510)
Q Consensus 28 KmDPYVVV~I~pd~K~rTrVdr~-Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~gDdlIGeVrVPLsdLl~~ 105 (510)
+..-|+++.+++....+|+...- ....=.+||.|.+.|..- -..|.++||-.....+.+|+++.|||......
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-----Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRW-----PESIKLEIYEKSGLSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecC-----CCEEEEEEEEccCccceEEEEEEeeCCCCccc
Confidence 56889999998766777765432 234445799999998662 36899999988778999999999998866543
No 151
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=77.06 E-value=7.2 Score=37.91 Aligned_cols=56 Identities=14% Similarity=0.330 Sum_probs=39.5
Q ss_pred eeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-C------CcceEEEEEeCc
Q 041258 42 KLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF-R------DMHVGTVRVLVG 100 (510)
Q Consensus 42 K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~-g------DdlIGeVrVPLs 100 (510)
...|.|... ..+|.|+|.|.+.|+.... +.-.|.|++|+...- + ...||-+-+||-
T Consensus 55 ~~~S~V~yH-nk~P~f~DEiKi~LP~~l~--~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 55 EAYTAVTYH-NKSPDFYDEIKIKLPADLT--DNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eEEEEEEEe-CCCCcccceEEEEcCCCCC--CCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 456666654 7899999999999987643 467899999986422 1 245666666654
No 152
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=73.59 E-value=4.2 Score=47.83 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=60.0
Q ss_pred CCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCCC-CcceEEEEEeCcccCCCC
Q 041258 29 MRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWFR-DMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 29 mDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~g-DdlIGeVrVPLsdLl~~~ 106 (510)
+++|+.+.+......+|.+..+-=.+|.|.+.|...+... ...+++.|.+.+..+ ..++|.+++|+-.++.+.
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~-----~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~ 211 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK-----AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGH 211 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhcccccccc-----ccEEEEeecCCccccceeEEEEeccchhhhhccc
Confidence 5899999997666667776655348999999998887775 468999998888888 899999999999998754
No 153
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=68.38 E-value=17 Score=35.63 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=40.4
Q ss_pred eeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC----------CCcceEEEEEeCcc
Q 041258 42 KLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF----------RDMHVGTVRVLVGN 101 (510)
Q Consensus 42 K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~----------gDdlIGeVrVPLsd 101 (510)
...|.|... ..+|.|+|.|.+.|+.... +.-.|.|++|+...- ....+|-+-+||-.
T Consensus 57 ~~~s~V~yh-~k~P~f~dEiKI~LP~~l~--~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHH-NQNPEFYDEIKIELPTQLH--EKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEc-CCCCccceeEEEecCCcCC--CCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 456667654 6999999999999987643 467899999986421 12456766666654
No 154
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=65.49 E-value=18 Score=34.40 Aligned_cols=95 Identities=15% Similarity=0.111 Sum_probs=56.9
Q ss_pred ceEEEEEEEEecCCCCCCCCCCcEEEEEEcCC------CeeEeeecC-CCCCCceeceEEEEEecCCCCCCCCceEEEEE
Q 041258 9 FQLLELNIISAQDLAPVSRSMRTYAVAWVHPN------RKLSTRVDA-HGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEI 81 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v~GKmDPYVVV~I~pd------~K~rTrVdr-~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEV 81 (510)
...|.|.|-... |++...-.|||+.|++-.. ..+.|.|.. ..+..=.||....+..+-+.|. ....|.||+
T Consensus 12 ~t~l~v~Iekig-lkda~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp-~Gaai~fE~ 89 (147)
T PF14186_consen 12 MTYLSVFIEKIG-LKDASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLP-KGAAIFFEF 89 (147)
T ss_dssp --EEEEEEEEEE--TTGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS--TT-EEEEEE
T ss_pred CceEEEEEEEEE-ECChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCC-CceEEEEEE
Confidence 345777777765 8877666899999998532 255677652 2355667787777765555554 467899999
Q ss_pred EeecCC--CCcceEEEEEeCcccCCC
Q 041258 82 FALHWF--RDMHVGTVRVLVGNLIPP 105 (510)
Q Consensus 82 yD~d~~--gDdlIGeVrVPLsdLl~~ 105 (510)
.++..- +-...+.+.+++.++.++
T Consensus 90 kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 90 KHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EeeeccceeeeeeEEEEEEhhhccCC
Confidence 998644 335689999999888754
No 155
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=53.98 E-value=83 Score=36.78 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=60.8
Q ss_pred EEEEEEEEecCCCCCCCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeec----C
Q 041258 11 LLELNIISAQDLAPVSRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALH----W 86 (510)
Q Consensus 11 tLEVTVISAqdLk~v~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d----~ 86 (510)
.|||.|.+.|+|+.+.-.-=.||+..+.+ .|++|--. -..-|.|...=.|...+. .-.+.|.+|-.- .
T Consensus 342 smevvvmevqglksvapnrivyctmeveg-eklqtdqa--easkp~wgtqgdfstthp-----lpvvkvklftestgvla 413 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAPNRIVYCTMEVEG-EKLQTDQA--EASKPKWGTQGDFSTTHP-----LPVVKVKLFTESTGVLA 413 (1218)
T ss_pred eeeEEEeeeccccccCCCeeEEEEEEecc-cccccchh--hhcCCCCCcCCCcccCCC-----CceeEEEEEeecceeEE
Confidence 58999999999998865567899999987 67777533 367899998877776654 346778888764 3
Q ss_pred CCCcceEEEEEe
Q 041258 87 FRDMHVGTVRVL 98 (510)
Q Consensus 87 ~gDdlIGeVrVP 98 (510)
+.|+-+|++-+.
T Consensus 414 ledkelgrvil~ 425 (1218)
T KOG3543|consen 414 LEDKELGRVILQ 425 (1218)
T ss_pred eechhhCeEEEe
Confidence 378899987654
No 156
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=49.50 E-value=3.6 Score=47.23 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=39.1
Q ss_pred EEEEEEecCCCCC------CCCCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEec
Q 041258 13 ELNIISAQDLAPV------SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVD 66 (510)
Q Consensus 13 EVTVISAqdLk~v------~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~ 66 (510)
-+++|+|.++.+. ..++++++++.++ ++..+|....+ +.+|+|||+ .|.+.
T Consensus 283 ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~-~~~frt~~~~~-~e~piyNe~-~~E~~ 339 (975)
T KOG2419|consen 283 LLTLIGAEMKYDIVEDVAKLFKDKWLAITSFG-EQTFRTEISDD-TEKPIYNED-EREDS 339 (975)
T ss_pred HHHHhhhhcccchhhhhhhccCCCchheeecc-hhhhhhhhhcc-ccccccccc-ccccc
Confidence 3567888888664 2579999999985 67889988765 899999998 44443
No 157
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=47.63 E-value=2.3e+02 Score=26.71 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=54.6
Q ss_pred EEEEEEecCCCCCCCCCCcEEEEEEc---------CCC-eeEeeecCCC----CCCceeceEEEEEecCCCCCCCCceEE
Q 041258 13 ELNIISAQDLAPVSRSMRTYAVAWVH---------PNR-KLSTRVDAHG----RNNPTWNDKFVFRVDEDFLHNDTSAVM 78 (510)
Q Consensus 13 EVTVISAqdLk~v~GKmDPYVVV~I~---------pd~-K~rTrVdr~G----g~NPvWNEkF~F~V~e~~L~~~~s~L~ 78 (510)
.=.|.+|++... .+.||.-.+. +.. ...|.++... ...=+||..|.|.+...... .--.|.
T Consensus 5 ~G~I~~a~~f~~----~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~-gwP~L~ 79 (168)
T PF07162_consen 5 IGEIESAEGFEE----DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQ-GWPQLV 79 (168)
T ss_pred EEEEEEEECCCC----CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCC-CCceEE
Confidence 346778886653 4677765442 123 4566665422 34568999988876554332 235899
Q ss_pred EEEEeecCC-CCcceEEEEEeCc
Q 041258 79 IEIFALHWF-RDMHVGTVRVLVG 100 (510)
Q Consensus 79 VEVyD~d~~-gDdlIGeVrVPLs 100 (510)
|+||..|.+ ++.+.|-..+.|.
T Consensus 80 l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 80 LQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEcccCCeEEeEEeEEEeC
Confidence 999999966 7889997777664
No 158
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=38.68 E-value=75 Score=28.13 Aligned_cols=87 Identities=10% Similarity=0.075 Sum_probs=52.0
Q ss_pred EEEEEecCCCCCCC--CceEEEEEEeecC----CCCcceEEEEEeCcccCCCCCCCCCCC--CCc-ccceEEEEEeeCCC
Q 041258 60 KFVFRVDEDFLHND--TSAVMIEIFALHW----FRDMHVGTVRVLVGNLIPPPTRSLHHS--HRS-FGMRFVALQVRRPS 130 (510)
Q Consensus 60 kF~F~V~e~~L~~~--~s~L~VEVyD~d~----~gDdlIGeVrVPLsdLl~~~~R~~h~~--~~~-~~~r~vsyqLrrpS 130 (510)
...|.+++++|... ...|.+.++.... -...+||.+.|+|.+.+..-. ....+ ..+ ....--.|+|..+.
T Consensus 12 ScLF~~~~~~L~~~l~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~-~~~~~~~~~p~s~~~k~~f~L~~~~ 90 (112)
T PF14924_consen 12 SCLFALTPEDLQQSLSSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRIL-KDSAECNGQPSSKTIKGTFPLFDEN 90 (112)
T ss_pred EEEEEcCHHHHHHHhhCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHH-HHHHhhccCCCchhhcceeEeecCC
Confidence 45677766655311 3456666665432 245799999999998763210 00000 000 00111278999999
Q ss_pred CCcceEEEEEEEEeeCC
Q 041258 131 GRPQGILNIGVALLDSS 147 (510)
Q Consensus 131 GKpqG~LnLsV~f~d~s 147 (510)
|...|.|.|.|++..-+
T Consensus 91 ~~~~G~I~l~iRLsclG 107 (112)
T PF14924_consen 91 GNPVGEISLYIRLSCLG 107 (112)
T ss_pred CceeeeEEEEEEEecCc
Confidence 99999999999986543
No 159
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=30.10 E-value=83 Score=37.90 Aligned_cols=72 Identities=14% Similarity=0.305 Sum_probs=44.9
Q ss_pred eEEEEEEEEecCCCCCC-CCCCcEEEEEEc-CCC-----eeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEE
Q 041258 10 QLLELNIISAQDLAPVS-RSMRTYAVAWVH-PNR-----KLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIF 82 (510)
Q Consensus 10 gtLEVTVISAqdLk~v~-GKmDPYVVV~I~-pd~-----K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVy 82 (510)
+.+.|+++++..+.-.. ..+..||.+.+. |.. +.+++| .|..+|.||+.+.|+|-=-.|. ....|.|.||
T Consensus 343 ~~frI~l~~is~~n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v--~~~~~~~Wn~~leFDI~i~DLP-r~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLPETVDLKVFVEAGLYHGTEVLCKTRSTSEV--PGCSFPLWNEWLEFDIYIKDLP-RMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccCCCcccceEEEEEEEEEECCeehhcccccCCC--CCccchhccceeEeeeecCCCC-hhhhheeeee
Confidence 35788888887664321 235555555553 432 223333 4688999999999987544443 3457888888
Q ss_pred ee
Q 041258 83 AL 84 (510)
Q Consensus 83 D~ 84 (510)
.-
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 75
No 160
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=29.61 E-value=54 Score=37.10 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=44.9
Q ss_pred eEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEeecCC-----CCcceEEEEEeCcccCCCC
Q 041258 43 LSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFALHWF-----RDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 43 ~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~-----gDdlIGeVrVPLsdLl~~~ 106 (510)
.+|.+++ +.+||.|-++|.+..--+ ....|.|+++|.+.. ..+++|++..-|..++...
T Consensus 43 ~rte~i~-~~~~p~f~~~~~l~y~fE----~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~ 106 (529)
T KOG1327|consen 43 GRTEVIR-NVLNPFFTKKFLLQYRFE----KVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS 106 (529)
T ss_pred cceeeee-ccCCccceeeechhheee----eeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh
Confidence 3777776 489999999887654332 356899999998633 5689999999999888654
No 161
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=28.41 E-value=3.8e+02 Score=29.60 Aligned_cols=100 Identities=7% Similarity=0.160 Sum_probs=63.1
Q ss_pred CCCCCcEEEEEEcCCCeeEeeecCCCCCCce-eceEEEEEecCCCCCCCCceEEEEEEeecCCCCcceEEEEEeCcccCC
Q 041258 26 SRSMRTYAVAWVHPNRKLSTRVDAHGRNNPT-WNDKFVFRVDEDFLHNDTSAVMIEIFALHWFRDMHVGTVRVLVGNLIP 104 (510)
Q Consensus 26 ~GKmDPYVVV~I~pd~K~rTrVdr~Gg~NPv-WNEkF~F~V~e~~L~~~~s~L~VEVyD~d~~gDdlIGeVrVPLsdLl~ 104 (510)
+-.-..|+.+.++ ....+|.....+-.+-+ -.+.....|.- -+.+|.|.||-....+...||.+.|.+..-+-
T Consensus 71 ~k~khiyIef~~G-r~d~TT~~IpTsKK~RI~IqqRV~IkIRQ-----cDnTLkI~lfKKkLvkk~hIgdI~InIn~dII 144 (508)
T PTZ00447 71 NKYKHIYIIFSTD-KYDFTTDEIPTNKKNRIHIDQRVDIKIRQ-----CDETLRVDLFTTKLTKKVHIGQIKIDINASVI 144 (508)
T ss_pred ccceeEEEEEEcC-ceEEEccccccCcCceEEEeeeeeeeeee-----cCceEEEEEEeccccceeEEEEEEecccHHHH
Confidence 3445778888875 44556633322222222 23444444432 24689999998888899999999999874433
Q ss_pred CCCCCCCCCCCcccceEEEEEeeCCCCCcceEEEEEEE
Q 041258 105 PPTRSLHHSHRSFGMRFVALQVRRPSGRPQGILNIGVA 142 (510)
Q Consensus 105 ~~~R~~h~~~~~~~~r~vsyqLrrpSGKpqG~LnLsV~ 142 (510)
... -+...||-+ ..+|+..+.|.|++.
T Consensus 145 dk~----------FPKnkWy~c-~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 145 SKS----------FPKNEWFVC-FKDGQEICKVQMSFY 171 (508)
T ss_pred hcc----------CCccceEEE-ecCCceeeeEEEEeh
Confidence 221 123346766 468999999998876
No 162
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.35 E-value=47 Score=38.65 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=34.8
Q ss_pred CCCcEEEEEEcCCCeeEeeecCCCCCCceeceEEEEEecCCCCCCCCceEEEEEEee
Q 041258 28 SMRTYAVAWVHPNRKLSTRVDAHGRNNPTWNDKFVFRVDEDFLHNDTSAVMIEIFAL 84 (510)
Q Consensus 28 KmDPYVVV~I~pd~K~rTrVdr~Gg~NPvWNEkF~F~V~e~~L~~~~s~L~VEVyD~ 84 (510)
-.|+|+.|.+.-.+-..+.+. ....+|.||++|.+.|.. ...+.|.|+..
T Consensus 27 al~~y~~v~vk~~~~~~~~~~-~~~~~~~~~~~F~~~v~~------~~~~~i~v~~~ 76 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTK-VELRIPELRETFHVEVVA------GGAKNIIVLLK 76 (694)
T ss_pred hhhhhheeccceeecccccCC-CCCCCchhhhheeeeeec------CCceEEEEEec
Confidence 368999888753333233332 348899999999999766 35678888765
No 163
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=22.18 E-value=3e+02 Score=29.51 Aligned_cols=91 Identities=13% Similarity=0.245 Sum_probs=58.5
Q ss_pred ceEEEEEEEEecCCCCC-----CCC---CCcEEEEEEcCCCeeEeeecCCCCCCcee--ceEEEEEecCC------CCCC
Q 041258 9 FQLLELNIISAQDLAPV-----SRS---MRTYAVAWVHPNRKLSTRVDAHGRNNPTW--NDKFVFRVDED------FLHN 72 (510)
Q Consensus 9 ~gtLEVTVISAqdLk~v-----~GK---mDPYVVV~I~pd~K~rTrVdr~Gg~NPvW--NEkF~F~V~e~------~L~~ 72 (510)
.-.|.|+|..|++|... ..+ ..-|....+.+.....-+.. .-.+|.+ ++...|+|... ++.
T Consensus 191 ~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~--~l~~~~f~~er~s~vRirSS~~~L~~yf~- 267 (340)
T PF12416_consen 191 LFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFK--SLSSPSFPPERASGVRIRSSLRVLRRYFQ- 267 (340)
T ss_pred eEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeecc--ccCCCCcCeeeeeEEeecccHHHHHHHHh-
Confidence 34688999999999765 122 45566777776533322322 2455544 45444555432 122
Q ss_pred CCceEEEEEEeecCCCCcceEEEEEeCcccCCCC
Q 041258 73 DTSAVMIEIFALHWFRDMHVGTVRVLVGNLIPPP 106 (510)
Q Consensus 73 ~~s~L~VEVyD~d~~gDdlIGeVrVPLsdLl~~~ 106 (510)
....|.|-+|+ ++..||.+.|||..|++..
T Consensus 268 ~~~~L~I~Lc~----g~~~Lg~~~v~l~~Ll~~~ 297 (340)
T PF12416_consen 268 QIPKLQIHLCC----GNQSLGSTSVPLQPLLPKD 297 (340)
T ss_pred hCCCeEEEEee----CCcEEEEEEEEhhhccCCC
Confidence 23578888887 7889999999999998764
No 164
>KOG3217 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=22.09 E-value=32 Score=33.21 Aligned_cols=11 Identities=55% Similarity=1.177 Sum_probs=9.5
Q ss_pred cccccccccee
Q 041258 461 GLFSCFSNICG 471 (510)
Q Consensus 461 g~fscf~~~~g 471 (510)
=||-|+||||-
T Consensus 9 vlFvclGNiCR 19 (159)
T KOG3217|consen 9 VLFVCLGNICR 19 (159)
T ss_pred EEEEEeccccc
Confidence 48999999994
Done!