BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041259
         (257 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ILR|A Chain A, Crystal Structure Of Human Fanconi Anemia Protein E C-
           Terminal Domain
          Length = 264

 Score = 29.3 bits (64), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 63  EALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRM 106
           E   +L  +L+ ++E+T   F VL++ LCK GL       + ++
Sbjct: 177 ETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATTSMAYAKL 220


>pdb|1P4K|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
           D151n Mutant
 pdb|1P4K|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
           D151n Mutant
 pdb|1P4V|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
           D151n Mutant With Glycine
 pdb|1P4V|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
           D151n Mutant With Glycine
          Length = 295

 Score = 27.7 bits (60), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 50/140 (35%), Gaps = 17/140 (12%)

Query: 128 KNCIERARNLFDEMPKRDMIPDTTAYTALIDGY-----------------LKHESFKEAL 170
           KN I  AR + ++ P   ++ D     AL  G+                 LK   +K  +
Sbjct: 86  KNPISVARAVMEKTPHVMLVGDGALEFALSQGFKKENLLTAESEKEWKEWLKTSQYKPIV 145

Query: 171 NLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKH 230
           N++N  T   + LD     S     S   +    RV    +IG G+  D  +  +    H
Sbjct: 146 NIENHNTIGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGH 205

Query: 231 YERGNMDEAIELQNEMMGRG 250
            E         L  E+M +G
Sbjct: 206 GEEVIRTVGTHLVVELMNQG 225


>pdb|9GAF|A Chain A, Precursor Of The W11f Mutant Glycosylasparaginase From
           Flavobacterium Meningosepticum
 pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylasparaginase From
           Flavobacterium Meningosepticum
          Length = 295

 Score = 27.7 bits (60), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 50/140 (35%), Gaps = 17/140 (12%)

Query: 128 KNCIERARNLFDEMPKRDMIPDTTAYTALIDGY-----------------LKHESFKEAL 170
           KN I  AR + ++ P   ++ D     AL  G+                 LK   +K  +
Sbjct: 86  KNPISVARAVMEKTPHVMLVGDGALEFALSQGFKKENLLTAESEKEWKEWLKTSQYKPIV 145

Query: 171 NLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKH 230
           N++N  T   + LD     S     S   +    RV    +IG G+  D  +  +    H
Sbjct: 146 NIENHDTIGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGH 205

Query: 231 YERGNMDEAIELQNEMMGRG 250
            E         L  E+M +G
Sbjct: 206 GEEVIRTVGTHLVVELMNQG 225


>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 27.3 bits (59), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 99  AIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERA 134
           A D   +M  FG+ P +  Y   + G C+K   ++A
Sbjct: 124 AFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.139    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,574,900
Number of Sequences: 62578
Number of extensions: 305731
Number of successful extensions: 639
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 10
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)