Query 041259
Match_columns 257
No_of_seqs 567 out of 1292
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 05:21:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.5E-50 9.8E-55 334.5 30.9 254 2-255 499-754 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.1E-49 4.6E-54 330.5 32.0 255 1-255 463-719 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3.4E-44 7.5E-49 295.5 22.5 242 2-254 251-493 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2E-43 4.3E-48 291.0 24.0 242 7-256 186-463 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.3E-42 2.8E-47 292.2 23.6 72 184-255 553-625 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 2.3E-41 5.1E-46 284.6 26.0 242 7-256 149-390 (857)
7 PRK11788 tetratricopeptide rep 99.9 1E-21 2.3E-26 152.8 26.4 239 12-256 109-354 (389)
8 PRK11788 tetratricopeptide rep 99.9 2.7E-20 5.8E-25 144.9 28.7 237 9-249 68-311 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 1.5E-18 3.2E-23 148.5 29.6 233 9-247 634-898 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 9.8E-18 2.1E-22 143.5 30.7 232 11-249 568-799 (899)
11 TIGR00990 3a0801s09 mitochondr 99.8 1E-15 2.2E-20 125.6 30.2 236 9-249 330-571 (615)
12 PRK15174 Vi polysaccharide exp 99.8 1.2E-15 2.7E-20 125.2 30.2 155 89-248 221-380 (656)
13 PRK15174 Vi polysaccharide exp 99.8 1.6E-15 3.4E-20 124.6 30.4 235 9-249 109-347 (656)
14 TIGR00990 3a0801s09 mitochondr 99.8 1.1E-14 2.3E-19 119.6 30.8 239 6-249 156-496 (615)
15 PF13429 TPR_15: Tetratricopep 99.7 4.4E-17 9.6E-22 121.0 11.9 220 20-246 54-274 (280)
16 PRK09782 bacteriophage N4 rece 99.7 6.8E-14 1.5E-18 118.2 30.1 232 9-250 476-707 (987)
17 PF13429 TPR_15: Tetratricopep 99.7 1E-16 2.2E-21 119.1 11.3 235 8-249 7-243 (280)
18 KOG4626 O-linked N-acetylgluco 99.7 5.9E-15 1.3E-19 114.3 20.1 235 11-255 253-489 (966)
19 PRK11447 cellulose synthase su 99.7 2.1E-13 4.6E-18 119.2 30.7 238 13-254 464-746 (1157)
20 PRK10747 putative protoheme IX 99.7 2.8E-13 6.1E-18 105.3 28.2 221 18-248 126-389 (398)
21 TIGR02521 type_IV_pilW type IV 99.7 1.6E-13 3.4E-18 99.2 25.3 204 42-249 28-232 (234)
22 TIGR02521 type_IV_pilW type IV 99.7 2.9E-13 6.2E-18 97.9 25.7 201 9-213 30-231 (234)
23 KOG4422 Uncharacterized conser 99.7 1.1E-13 2.3E-18 102.9 23.2 240 7-250 204-463 (625)
24 KOG4318 Bicoid mRNA stability 99.7 7.3E-15 1.6E-19 117.5 16.5 236 1-257 16-273 (1088)
25 KOG4626 O-linked N-acetylgluco 99.7 3.1E-14 6.7E-19 110.4 18.8 231 12-249 220-451 (966)
26 COG2956 Predicted N-acetylgluc 99.7 8.2E-13 1.8E-17 94.8 24.5 225 23-250 48-279 (389)
27 PRK11447 cellulose synthase su 99.7 1E-12 2.2E-17 115.0 30.4 236 9-249 384-700 (1157)
28 PRK09782 bacteriophage N4 rece 99.7 8.7E-13 1.9E-17 111.7 28.8 233 7-248 506-739 (987)
29 PRK12370 invasion protein regu 99.7 9.9E-13 2.1E-17 106.5 27.8 232 9-248 255-501 (553)
30 KOG1126 DNA-binding cell divis 99.6 1.2E-13 2.6E-18 107.6 20.4 234 11-250 354-621 (638)
31 KOG4422 Uncharacterized conser 99.6 2.3E-12 5E-17 96.0 25.3 180 1-180 264-463 (625)
32 TIGR00540 hemY_coli hemY prote 99.6 2.4E-12 5.3E-17 100.6 27.2 228 17-248 125-398 (409)
33 PRK10747 putative protoheme IX 99.6 5.9E-12 1.3E-16 98.0 28.0 218 23-250 97-358 (398)
34 COG3071 HemY Uncharacterized e 99.6 1.3E-11 2.9E-16 91.0 27.2 234 13-254 121-395 (400)
35 KOG1126 DNA-binding cell divis 99.6 3.7E-13 7.9E-18 104.9 19.8 220 24-248 333-585 (638)
36 PRK12370 invasion protein regu 99.6 5.3E-12 1.1E-16 102.3 25.8 217 24-250 318-536 (553)
37 PF13041 PPR_2: PPR repeat fam 99.6 6.9E-15 1.5E-19 78.8 6.2 50 8-57 1-50 (50)
38 PRK10049 pgaA outer membrane p 99.6 1.6E-11 3.5E-16 103.2 29.2 236 9-249 48-339 (765)
39 KOG1155 Anaphase-promoting com 99.6 2.2E-11 4.9E-16 91.5 25.5 239 5-247 257-534 (559)
40 KOG1129 TPR repeat-containing 99.6 1.2E-12 2.6E-17 94.3 17.8 229 14-248 227-457 (478)
41 KOG1155 Anaphase-promoting com 99.6 6E-12 1.3E-16 94.5 22.1 227 18-248 235-494 (559)
42 TIGR00540 hemY_coli hemY prote 99.6 2.3E-11 5E-16 95.2 26.3 230 21-254 95-369 (409)
43 COG2956 Predicted N-acetylgluc 99.5 3.7E-11 8.1E-16 86.5 23.8 197 12-213 71-277 (389)
44 PRK14574 hmsH outer membrane p 99.5 7.2E-11 1.6E-15 98.5 28.7 90 159-248 301-395 (822)
45 PRK10049 pgaA outer membrane p 99.5 8.3E-11 1.8E-15 99.0 29.4 236 9-250 14-302 (765)
46 KOG1840 Kinesin light chain [C 99.5 2.8E-11 6E-16 94.8 24.2 239 10-248 199-478 (508)
47 PF13041 PPR_2: PPR repeat fam 99.5 5.6E-14 1.2E-18 75.3 6.3 47 149-195 2-48 (50)
48 COG3063 PilF Tfp pilus assembl 99.5 2.3E-10 4.9E-15 78.7 22.9 193 16-212 41-234 (250)
49 KOG2003 TPR repeat-containing 99.5 8.3E-11 1.8E-15 88.7 22.0 207 22-235 502-709 (840)
50 KOG2076 RNA polymerase III tra 99.5 4.3E-10 9.2E-15 91.0 26.7 132 7-141 136-267 (895)
51 PRK14574 hmsH outer membrane p 99.4 1E-09 2.2E-14 91.7 29.1 229 17-249 109-445 (822)
52 PRK11189 lipoprotein NlpI; Pro 99.4 5.2E-10 1.1E-14 83.7 24.6 218 24-250 40-266 (296)
53 KOG1129 TPR repeat-containing 99.4 1.4E-11 3E-16 89.0 14.7 196 49-249 227-424 (478)
54 COG3063 PilF Tfp pilus assembl 99.4 8.1E-10 1.8E-14 76.1 22.3 198 46-247 36-234 (250)
55 KOG0547 Translocase of outer m 99.4 2.3E-10 5E-15 86.8 21.4 223 19-247 335-564 (606)
56 PRK11189 lipoprotein NlpI; Pro 99.4 7.4E-10 1.6E-14 82.9 24.3 204 11-224 65-274 (296)
57 KOG2003 TPR repeat-containing 99.4 2.5E-10 5.3E-15 86.3 21.4 224 19-248 428-688 (840)
58 COG3071 HemY Uncharacterized e 99.4 2.6E-09 5.6E-14 79.2 26.1 221 23-250 97-358 (400)
59 PF12569 NARP1: NMDA receptor- 99.3 8.5E-09 1.8E-13 81.9 26.9 127 119-247 198-332 (517)
60 PF12569 NARP1: NMDA receptor- 99.3 1.2E-08 2.7E-13 81.0 27.4 228 16-251 10-293 (517)
61 KOG1173 Anaphase-promoting com 99.3 4.4E-09 9.6E-14 81.3 21.6 226 17-247 285-516 (611)
62 PF04733 Coatomer_E: Coatomer 99.3 1.7E-09 3.7E-14 80.0 17.8 222 12-248 37-264 (290)
63 KOG2002 TPR-containing nuclear 99.3 1.3E-08 2.8E-13 83.5 24.0 238 9-249 269-525 (1018)
64 KOG0495 HAT repeat protein [RN 99.3 1.5E-08 3.3E-13 80.0 23.5 234 9-248 617-879 (913)
65 PLN02789 farnesyltranstransfer 99.3 6.1E-08 1.3E-12 72.8 25.7 230 12-247 39-300 (320)
66 KOG1173 Anaphase-promoting com 99.2 9.4E-09 2E-13 79.5 21.4 220 7-232 309-534 (611)
67 KOG0547 Translocase of outer m 99.2 6.4E-09 1.4E-13 79.2 20.0 197 13-214 363-566 (606)
68 KOG0495 HAT repeat protein [RN 99.2 6.5E-08 1.4E-12 76.5 25.9 220 22-248 562-781 (913)
69 KOG2002 TPR-containing nuclear 99.2 5.1E-09 1.1E-13 85.7 19.3 230 15-248 501-744 (1018)
70 PF12854 PPR_1: PPR repeat 99.2 2.8E-11 6.1E-16 58.5 3.6 34 4-37 1-34 (34)
71 KOG1174 Anaphase-promoting com 99.2 9.7E-08 2.1E-12 71.6 23.4 62 186-249 439-500 (564)
72 KOG1070 rRNA processing protei 99.2 8.6E-08 1.9E-12 81.6 25.0 230 9-243 1457-1694(1710)
73 cd05804 StaR_like StaR_like; a 99.2 1.1E-07 2.4E-12 73.5 24.4 228 18-249 51-293 (355)
74 KOG1070 rRNA processing protei 99.2 4.6E-08 1E-12 83.2 22.9 220 28-254 1443-1668(1710)
75 KOG1840 Kinesin light chain [C 99.2 3.7E-08 7.9E-13 77.6 21.1 208 41-248 195-437 (508)
76 KOG1125 TPR repeat-containing 99.1 1.1E-08 2.4E-13 79.3 17.3 224 18-248 293-526 (579)
77 PF04733 Coatomer_E: Coatomer 99.1 1.3E-08 2.9E-13 75.3 16.1 218 17-249 8-230 (290)
78 KOG4318 Bicoid mRNA stability 99.1 1E-08 2.2E-13 83.4 15.9 214 2-235 51-286 (1088)
79 TIGR03302 OM_YfiO outer membra 99.1 8.4E-08 1.8E-12 69.6 19.6 186 43-249 31-232 (235)
80 KOG1128 Uncharacterized conser 99.1 3.3E-08 7.1E-13 78.9 18.2 214 14-248 402-615 (777)
81 PRK15179 Vi polysaccharide bio 99.1 3.7E-07 8E-12 75.4 24.9 135 77-214 83-217 (694)
82 KOG2076 RNA polymerase III tra 99.1 2.6E-07 5.6E-12 75.5 22.7 199 53-254 147-350 (895)
83 PRK10370 formate-dependent nit 99.1 1.7E-07 3.7E-12 65.7 19.4 119 93-214 52-173 (198)
84 KOG1915 Cell cycle control pro 99.1 8.9E-07 1.9E-11 67.8 24.1 102 147-249 434-536 (677)
85 cd05804 StaR_like StaR_like; a 99.1 1.6E-06 3.5E-11 67.1 26.7 199 12-214 8-215 (355)
86 TIGR03302 OM_YfiO outer membra 99.1 1.2E-07 2.6E-12 68.8 19.0 185 9-214 32-232 (235)
87 COG5010 TadD Flp pilus assembl 99.0 3E-07 6.6E-12 64.9 19.7 157 49-209 70-226 (257)
88 KOG4340 Uncharacterized conser 99.0 1.2E-07 2.5E-12 68.4 17.9 238 1-248 1-269 (459)
89 COG5010 TadD Flp pilus assembl 99.0 5.3E-07 1.1E-11 63.7 20.3 162 79-245 66-227 (257)
90 PF12854 PPR_1: PPR repeat 99.0 6.1E-10 1.3E-14 53.8 4.0 32 215-246 2-33 (34)
91 PRK10370 formate-dependent nit 99.0 3.1E-07 6.7E-12 64.4 18.8 149 87-250 23-174 (198)
92 PRK15359 type III secretion sy 98.9 2.6E-07 5.5E-12 61.4 15.5 26 117-142 60-85 (144)
93 PRK15179 Vi polysaccharide bio 98.9 9.4E-07 2E-11 73.1 20.9 147 41-191 82-228 (694)
94 KOG1915 Cell cycle control pro 98.9 9.5E-06 2.1E-10 62.4 24.3 233 9-248 321-584 (677)
95 PRK14720 transcript cleavage f 98.9 1.6E-06 3.4E-11 72.9 21.7 215 9-231 30-268 (906)
96 KOG1128 Uncharacterized conser 98.9 1.8E-07 3.9E-12 74.8 15.5 209 11-231 425-634 (777)
97 PLN02789 farnesyltranstransfer 98.9 4.2E-06 9.1E-11 63.1 22.2 197 48-249 40-250 (320)
98 KOG4340 Uncharacterized conser 98.9 2E-07 4.2E-12 67.2 13.8 198 46-254 11-212 (459)
99 PRK15359 type III secretion sy 98.9 3.4E-07 7.3E-12 60.9 13.8 117 30-153 13-129 (144)
100 KOG2047 mRNA splicing factor [ 98.8 2.6E-05 5.5E-10 62.3 25.3 100 82-181 389-508 (835)
101 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.3E-06 2.7E-11 67.3 17.5 125 116-247 170-295 (395)
102 KOG3081 Vesicle coat complex C 98.8 1.4E-05 2.9E-10 57.0 21.9 221 12-247 43-269 (299)
103 KOG3081 Vesicle coat complex C 98.8 1.4E-05 3E-10 56.9 24.6 226 6-249 6-236 (299)
104 TIGR02552 LcrH_SycD type III s 98.8 8.1E-07 1.8E-11 58.5 14.4 96 117-214 19-114 (135)
105 KOG3060 Uncharacterized conser 98.8 1.6E-05 3.5E-10 56.2 22.1 188 23-214 25-220 (289)
106 KOG1125 TPR repeat-containing 98.8 4E-06 8.6E-11 65.6 19.1 228 9-242 318-564 (579)
107 KOG1174 Anaphase-promoting com 98.8 1.1E-05 2.5E-10 60.9 20.6 237 6-248 190-466 (564)
108 TIGR02552 LcrH_SycD type III s 98.7 1.6E-06 3.4E-11 57.1 13.9 95 48-144 20-114 (135)
109 COG4783 Putative Zn-dependent 98.7 3E-05 6.4E-10 59.9 21.9 139 54-214 315-454 (484)
110 PF09976 TPR_21: Tetratricopep 98.7 5.9E-06 1.3E-10 55.1 16.1 124 13-140 15-143 (145)
111 PRK14720 transcript cleavage f 98.7 7.3E-06 1.6E-10 69.0 19.8 202 42-250 28-253 (906)
112 KOG4162 Predicted calmodulin-b 98.7 9.8E-05 2.1E-09 60.1 25.2 238 6-248 476-782 (799)
113 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 1.6E-06 3.4E-11 66.7 14.5 124 48-177 172-295 (395)
114 PRK04841 transcriptional regul 98.7 3.8E-05 8.1E-10 67.0 24.7 238 12-249 493-760 (903)
115 PF09976 TPR_21: Tetratricopep 98.7 5.7E-06 1.2E-10 55.2 15.5 124 118-245 15-143 (145)
116 KOG3060 Uncharacterized conser 98.7 3.7E-05 8E-10 54.4 19.8 171 6-180 47-221 (289)
117 KOG2376 Signal recognition par 98.7 3E-05 6.5E-10 61.2 21.1 221 15-250 17-254 (652)
118 COG4783 Putative Zn-dependent 98.7 2.8E-05 6.1E-10 60.0 20.6 126 85-213 311-436 (484)
119 TIGR00756 PPR pentatricopeptid 98.7 5.9E-08 1.3E-12 47.4 4.3 33 222-254 2-34 (35)
120 KOG2047 mRNA splicing factor [ 98.7 0.00011 2.4E-09 58.9 24.6 200 11-212 388-613 (835)
121 PF13812 PPR_3: Pentatricopept 98.6 7.6E-08 1.7E-12 46.7 4.2 33 221-253 2-34 (34)
122 TIGR00756 PPR pentatricopeptid 98.6 7.2E-08 1.6E-12 47.1 4.1 33 12-44 2-34 (35)
123 KOG4162 Predicted calmodulin-b 98.6 2.9E-05 6.2E-10 63.1 20.2 239 6-247 319-574 (799)
124 PF10037 MRP-S27: Mitochondria 98.6 1.4E-06 3E-11 67.4 12.5 124 40-163 61-186 (429)
125 PF13812 PPR_3: Pentatricopept 98.6 9.8E-08 2.1E-12 46.3 4.2 33 11-43 2-34 (34)
126 PRK04841 transcriptional regul 98.6 0.00014 2.9E-09 63.6 25.7 232 17-248 459-719 (903)
127 PF10037 MRP-S27: Mitochondria 98.6 2.2E-06 4.9E-11 66.3 13.0 125 74-198 60-186 (429)
128 PF05843 Suf: Suppressor of fo 98.6 6.7E-06 1.4E-10 61.1 14.8 129 82-213 3-135 (280)
129 KOG0624 dsRNA-activated protei 98.6 0.00011 2.5E-09 54.5 21.7 226 18-249 114-370 (504)
130 KOG1156 N-terminal acetyltrans 98.6 0.00012 2.6E-09 58.5 21.6 118 22-142 53-170 (700)
131 KOG1156 N-terminal acetyltrans 98.6 0.00011 2.4E-09 58.8 21.3 232 11-248 9-247 (700)
132 KOG3785 Uncharacterized conser 98.5 1.7E-05 3.8E-10 58.9 15.2 198 49-253 289-494 (557)
133 KOG1914 mRNA cleavage and poly 98.5 0.00021 4.6E-09 56.1 21.1 150 96-248 347-500 (656)
134 PF08579 RPM2: Mitochondrial r 98.5 2.7E-06 5.8E-11 52.3 8.8 75 17-91 32-115 (120)
135 PF05843 Suf: Suppressor of fo 98.4 1.8E-05 3.9E-10 58.9 13.8 131 11-144 2-136 (280)
136 PF08579 RPM2: Mitochondrial r 98.4 6.3E-06 1.4E-10 50.7 9.1 74 87-160 32-114 (120)
137 TIGR02795 tol_pal_ybgF tol-pal 98.4 2.7E-05 5.9E-10 49.8 12.6 98 12-109 4-105 (119)
138 cd00189 TPR Tetratricopeptide 98.4 1.2E-05 2.6E-10 48.8 10.7 13 58-70 13-25 (100)
139 KOG2053 Mitochondrial inherita 98.4 0.00084 1.8E-08 55.9 25.1 219 20-249 19-255 (932)
140 cd00189 TPR Tetratricopeptide 98.4 1.4E-05 3E-10 48.6 10.8 94 13-108 3-96 (100)
141 KOG2376 Signal recognition par 98.4 0.00013 2.7E-09 57.8 17.1 183 50-248 17-203 (652)
142 TIGR02795 tol_pal_ybgF tol-pal 98.4 3.8E-05 8.3E-10 49.1 12.6 98 117-214 4-105 (119)
143 PF01535 PPR: PPR repeat; Int 98.3 7.3E-07 1.6E-11 42.1 3.3 30 222-251 2-31 (31)
144 PF12895 Apc3: Anaphase-promot 98.3 3.1E-06 6.8E-11 50.6 6.8 81 163-245 2-83 (84)
145 PF12895 Apc3: Anaphase-promot 98.3 3.6E-06 7.9E-11 50.3 6.8 47 59-105 3-50 (84)
146 PRK10866 outer membrane biogen 98.3 0.00047 1E-08 50.2 21.2 184 45-248 32-240 (243)
147 KOG3617 WD40 and TPR repeat-co 98.3 0.00015 3.3E-09 59.9 17.6 211 9-247 756-994 (1416)
148 PF01535 PPR: PPR repeat; Int 98.3 9.3E-07 2E-11 41.7 3.4 29 12-40 2-30 (31)
149 PRK15363 pathogenicity island 98.3 8.1E-05 1.8E-09 49.3 13.3 93 120-214 40-132 (157)
150 KOG0548 Molecular co-chaperone 98.3 0.00068 1.5E-08 53.2 20.0 197 13-214 227-455 (539)
151 PLN03088 SGT1, suppressor of 98.3 6.5E-05 1.4E-09 57.9 14.7 89 89-179 11-99 (356)
152 KOG1127 TPR repeat-containing 98.3 0.00049 1.1E-08 58.0 19.8 214 26-246 474-697 (1238)
153 KOG3616 Selective LIM binding 98.3 6.7E-05 1.4E-09 61.2 14.7 167 18-209 740-906 (1636)
154 PRK15363 pathogenicity island 98.3 3E-05 6.5E-10 51.3 10.6 99 44-144 34-132 (157)
155 PRK10866 outer membrane biogen 98.3 0.00071 1.5E-08 49.2 21.2 195 13-212 35-239 (243)
156 PLN03088 SGT1, suppressor of 98.2 7.2E-05 1.6E-09 57.7 13.8 102 16-121 8-109 (356)
157 PRK02603 photosystem I assembl 98.2 0.00031 6.8E-09 48.3 15.4 86 82-168 37-124 (172)
158 PF14938 SNAP: Soluble NSF att 98.2 0.00083 1.8E-08 50.2 18.5 129 12-142 37-182 (282)
159 PRK10153 DNA-binding transcrip 98.2 0.00068 1.5E-08 54.9 18.8 143 76-224 333-490 (517)
160 KOG0985 Vesicle coat protein c 98.2 0.0013 2.7E-08 56.0 20.0 112 12-138 1106-1217(1666)
161 PRK02603 photosystem I assembl 98.2 0.00024 5.2E-09 48.9 14.1 90 45-135 35-126 (172)
162 KOG2053 Mitochondrial inherita 98.2 0.0032 6.9E-08 52.7 22.3 198 14-215 45-256 (932)
163 CHL00033 ycf3 photosystem I as 98.1 0.00016 3.4E-09 49.6 12.6 93 117-210 37-138 (168)
164 CHL00033 ycf3 photosystem I as 98.1 0.00012 2.5E-09 50.2 11.8 64 81-144 36-101 (168)
165 KOG1914 mRNA cleavage and poly 98.1 0.0024 5.2E-08 50.5 21.9 186 27-214 310-501 (656)
166 KOG0548 Molecular co-chaperone 98.1 0.002 4.3E-08 50.8 18.6 184 9-197 256-471 (539)
167 PRK10153 DNA-binding transcrip 98.1 0.00065 1.4E-08 55.0 16.8 140 39-181 331-484 (517)
168 KOG3617 WD40 and TPR repeat-co 98.1 0.00034 7.3E-09 58.0 15.0 209 9-245 725-963 (1416)
169 KOG1127 TPR repeat-containing 98.1 0.00037 8.1E-09 58.7 15.4 165 11-178 493-658 (1238)
170 KOG0553 TPR repeat-containing 98.1 0.00018 3.9E-09 52.3 11.6 100 89-192 90-189 (304)
171 PF06239 ECSIT: Evolutionarily 98.1 7.1E-05 1.5E-09 52.0 9.1 99 30-130 34-153 (228)
172 KOG3785 Uncharacterized conser 98.0 0.0026 5.6E-08 47.8 22.2 185 17-214 29-214 (557)
173 PF14559 TPR_19: Tetratricopep 98.0 3.1E-05 6.8E-10 44.1 6.4 52 22-74 3-54 (68)
174 KOG2796 Uncharacterized conser 98.0 0.0022 4.8E-08 46.1 16.5 138 82-222 179-321 (366)
175 PF13525 YfiO: Outer membrane 98.0 0.0022 4.7E-08 45.5 16.7 58 17-74 12-71 (203)
176 KOG3616 Selective LIM binding 98.0 0.00085 1.8E-08 55.1 15.6 109 122-243 739-847 (1636)
177 KOG0985 Vesicle coat protein c 98.0 0.0013 2.8E-08 55.9 16.7 181 46-246 1105-1305(1666)
178 KOG0553 TPR repeat-containing 98.0 0.0003 6.4E-09 51.3 11.4 98 54-155 90-187 (304)
179 PF06239 ECSIT: Evolutionarily 98.0 0.00057 1.2E-08 47.7 12.3 104 78-200 45-153 (228)
180 PF14938 SNAP: Soluble NSF att 98.0 0.0036 7.9E-08 46.8 18.5 195 47-245 37-259 (282)
181 COG4235 Cytochrome c biogenesi 98.0 0.0014 3E-08 48.0 14.9 100 149-250 155-257 (287)
182 PF14559 TPR_19: Tetratricopep 98.0 9.4E-05 2E-09 42.1 7.3 61 56-119 2-62 (68)
183 PF12688 TPR_5: Tetratrico pep 97.9 0.0012 2.7E-08 42.1 12.6 107 121-231 7-117 (120)
184 PF12688 TPR_5: Tetratrico pep 97.9 0.0018 3.8E-08 41.3 13.5 92 16-107 7-102 (120)
185 KOG0624 dsRNA-activated protei 97.9 0.0054 1.2E-07 46.0 23.9 227 15-250 43-299 (504)
186 PF13414 TPR_11: TPR repeat; P 97.9 0.00013 2.8E-09 41.7 7.0 62 11-73 4-66 (69)
187 KOG2796 Uncharacterized conser 97.9 0.0028 6.2E-08 45.6 14.4 138 49-189 181-323 (366)
188 PRK10803 tol-pal system protei 97.8 0.001 2.2E-08 48.9 12.8 88 126-213 154-245 (263)
189 PF13432 TPR_16: Tetratricopep 97.8 0.00017 3.7E-09 40.6 7.0 50 161-211 8-57 (65)
190 PF13432 TPR_16: Tetratricopep 97.8 0.00025 5.5E-09 39.9 7.6 58 191-249 3-60 (65)
191 COG4235 Cytochrome c biogenesi 97.8 0.0023 4.9E-08 47.0 13.9 101 112-214 153-256 (287)
192 PF13414 TPR_11: TPR repeat; P 97.8 0.00017 3.8E-09 41.1 6.8 60 152-212 5-65 (69)
193 COG4700 Uncharacterized protei 97.8 0.0051 1.1E-07 41.9 17.6 127 77-205 86-213 (251)
194 PF13525 YfiO: Outer membrane 97.8 0.0065 1.4E-07 43.0 18.6 181 49-240 9-198 (203)
195 PF12921 ATP13: Mitochondrial 97.7 0.0023 5E-08 41.3 11.3 98 114-231 1-99 (126)
196 PF03704 BTAD: Bacterial trans 97.7 0.00047 1E-08 46.0 8.6 72 46-118 63-139 (146)
197 COG4700 Uncharacterized protei 97.7 0.0076 1.6E-07 41.2 18.0 131 112-244 86-217 (251)
198 PRK10803 tol-pal system protei 97.6 0.0036 7.7E-08 46.1 13.0 100 150-249 143-246 (263)
199 PF03704 BTAD: Bacterial trans 97.6 0.00079 1.7E-08 44.9 8.5 56 155-211 67-122 (146)
200 KOG1130 Predicted G-alpha GTPa 97.6 0.0015 3.3E-08 50.0 10.6 128 123-250 203-345 (639)
201 PRK15331 chaperone protein Sic 97.6 0.0095 2.1E-07 39.9 13.5 89 123-213 45-133 (165)
202 PF13371 TPR_9: Tetratricopept 97.6 0.001 2.2E-08 38.4 7.6 56 18-74 3-58 (73)
203 PF13281 DUF4071: Domain of un 97.5 0.027 5.9E-07 43.4 17.2 170 43-214 139-334 (374)
204 PRK15331 chaperone protein Sic 97.5 0.013 2.7E-07 39.4 13.9 90 87-178 44-133 (165)
205 PF12921 ATP13: Mitochondrial 97.5 0.0056 1.2E-07 39.5 10.7 98 79-196 1-99 (126)
206 PF13371 TPR_9: Tetratricopept 97.5 0.0018 3.9E-08 37.3 7.7 55 159-214 4-58 (73)
207 PF13424 TPR_12: Tetratricopep 97.4 0.00076 1.6E-08 39.5 6.0 62 186-247 6-73 (78)
208 PF10300 DUF3808: Protein of u 97.4 0.049 1.1E-06 44.0 17.6 161 85-248 193-375 (468)
209 PF13281 DUF4071: Domain of un 97.3 0.047 1E-06 42.2 19.2 168 81-250 142-335 (374)
210 PF13424 TPR_12: Tetratricopep 97.3 0.0015 3.3E-08 38.2 6.3 63 151-213 6-74 (78)
211 PF04053 Coatomer_WDAD: Coatom 97.3 0.06 1.3E-06 43.0 16.9 158 18-210 269-427 (443)
212 KOG1538 Uncharacterized conser 97.2 0.022 4.8E-07 46.5 13.3 91 150-251 747-848 (1081)
213 PF04840 Vps16_C: Vps16, C-ter 97.2 0.061 1.3E-06 41.0 21.0 109 117-245 179-287 (319)
214 KOG2041 WD40 repeat protein [G 97.1 0.075 1.6E-06 44.1 15.6 15 231-245 921-935 (1189)
215 COG1729 Uncharacterized protei 97.1 0.021 4.6E-07 41.5 10.9 95 153-248 145-243 (262)
216 KOG0543 FKBP-type peptidyl-pro 97.0 0.03 6.4E-07 43.0 11.7 91 18-109 216-320 (397)
217 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.041 9E-07 43.2 12.6 64 9-74 74-141 (453)
218 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.033 7.1E-07 43.8 11.9 64 79-144 74-141 (453)
219 PF04053 Coatomer_WDAD: Coatom 97.0 0.035 7.5E-07 44.3 12.4 132 11-175 296-427 (443)
220 KOG0543 FKBP-type peptidyl-pro 96.9 0.039 8.4E-07 42.4 11.8 105 53-179 216-320 (397)
221 PF09205 DUF1955: Domain of un 96.9 0.048 1E-06 35.1 13.3 138 93-252 15-152 (161)
222 KOG2610 Uncharacterized conser 96.9 0.11 2.3E-06 39.3 13.6 150 23-175 116-272 (491)
223 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.11 2.3E-06 40.9 13.9 129 81-213 398-530 (660)
224 COG3898 Uncharacterized membra 96.9 0.14 3.1E-06 39.5 23.9 216 22-249 132-392 (531)
225 KOG2610 Uncharacterized conser 96.8 0.11 2.4E-06 39.2 13.3 153 57-212 115-274 (491)
226 smart00299 CLH Clathrin heavy 96.8 0.065 1.4E-06 35.4 15.6 85 14-106 11-95 (140)
227 KOG3941 Intermediate in Toll s 96.8 0.023 5E-07 41.6 9.1 90 7-96 64-174 (406)
228 PF08631 SPO22: Meiosis protei 96.7 0.16 3.5E-06 38.0 24.2 224 20-247 3-273 (278)
229 KOG3941 Intermediate in Toll s 96.7 0.031 6.7E-07 40.9 9.4 35 202-236 140-174 (406)
230 PF10300 DUF3808: Protein of u 96.7 0.25 5.3E-06 40.1 17.0 161 50-213 193-375 (468)
231 KOG4555 TPR repeat-containing 96.7 0.077 1.7E-06 34.1 10.1 91 54-145 52-145 (175)
232 KOG0550 Molecular chaperone (D 96.7 0.2 4.4E-06 38.9 14.4 118 128-251 216-352 (486)
233 COG3118 Thioredoxin domain-con 96.6 0.17 3.7E-06 37.5 14.2 143 54-200 143-287 (304)
234 COG3629 DnrI DNA-binding trans 96.6 0.052 1.1E-06 40.1 10.3 79 45-124 153-236 (280)
235 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.25 5.3E-06 39.0 16.8 131 115-248 397-530 (660)
236 PF04840 Vps16_C: Vps16, C-ter 96.6 0.21 4.6E-06 38.1 20.0 108 82-209 179-286 (319)
237 COG1729 Uncharacterized protei 96.6 0.068 1.5E-06 39.0 10.3 97 12-109 144-244 (262)
238 KOG4555 TPR repeat-containing 96.4 0.1 2.3E-06 33.6 9.4 91 19-110 52-145 (175)
239 smart00299 CLH Clathrin heavy 96.4 0.14 3E-06 33.8 14.8 40 87-127 14-53 (140)
240 KOG4570 Uncharacterized conser 96.3 0.11 2.4E-06 38.7 10.3 128 16-145 25-165 (418)
241 PF07035 Mic1: Colon cancer-as 96.3 0.19 4.1E-06 34.2 13.1 23 73-95 22-44 (167)
242 COG3629 DnrI DNA-binding trans 96.3 0.11 2.3E-06 38.5 10.2 77 152-229 155-236 (280)
243 PF13428 TPR_14: Tetratricopep 96.3 0.025 5.4E-07 28.8 5.2 24 155-178 6-29 (44)
244 PF13428 TPR_14: Tetratricopep 96.3 0.018 3.9E-07 29.3 4.7 27 188-214 4-30 (44)
245 KOG2114 Vacuolar assembly/sort 96.3 0.33 7.2E-06 41.2 13.7 51 91-142 408-458 (933)
246 PF13512 TPR_18: Tetratricopep 96.2 0.18 3.9E-06 33.2 12.5 78 16-93 16-95 (142)
247 KOG2114 Vacuolar assembly/sort 96.2 0.67 1.4E-05 39.5 15.8 70 66-139 418-487 (933)
248 COG4105 ComL DNA uptake lipopr 96.2 0.3 6.5E-06 35.5 19.8 83 43-126 33-117 (254)
249 PRK11906 transcriptional regul 96.2 0.48 1E-05 37.6 16.8 80 132-213 321-400 (458)
250 PF13170 DUF4003: Protein of u 96.1 0.41 9E-06 36.1 15.0 130 61-192 78-224 (297)
251 COG3118 Thioredoxin domain-con 96.1 0.4 8.7E-06 35.6 16.8 149 87-239 141-291 (304)
252 COG1747 Uncharacterized N-term 96.0 0.62 1.3E-05 37.5 20.5 162 46-214 67-234 (711)
253 PF10602 RPN7: 26S proteasome 96.0 0.23 4.9E-06 34.4 10.4 111 33-143 23-141 (177)
254 PF07035 Mic1: Colon cancer-as 96.0 0.29 6.2E-06 33.3 14.5 137 100-250 14-150 (167)
255 KOG0550 Molecular chaperone (D 96.0 0.56 1.2E-05 36.6 17.5 158 19-180 178-351 (486)
256 KOG4570 Uncharacterized conser 96.0 0.18 3.9E-06 37.7 9.9 101 112-214 61-164 (418)
257 COG0457 NrfG FOG: TPR repeat [ 95.9 0.37 7.9E-06 34.3 25.9 222 24-248 37-264 (291)
258 PF10602 RPN7: 26S proteasome 95.9 0.33 7.2E-06 33.6 10.9 98 80-177 36-140 (177)
259 PF02259 FAT: FAT domain; Int 95.8 0.67 1.5E-05 35.9 16.9 202 16-248 4-212 (352)
260 COG0457 NrfG FOG: TPR repeat [ 95.7 0.47 1E-05 33.7 23.5 203 10-214 59-265 (291)
261 KOG1585 Protein required for f 95.7 0.52 1.1E-05 34.1 16.9 194 11-208 32-250 (308)
262 COG4105 ComL DNA uptake lipopr 95.7 0.53 1.2E-05 34.2 20.4 187 10-213 35-232 (254)
263 COG4649 Uncharacterized protei 95.6 0.42 9.1E-06 32.6 13.6 134 80-214 59-196 (221)
264 PRK11906 transcriptional regul 95.5 0.98 2.1E-05 36.0 16.4 162 46-210 252-432 (458)
265 KOG1550 Extracellular protein 95.5 1.2 2.7E-05 37.1 18.0 180 26-215 228-427 (552)
266 PF13176 TPR_7: Tetratricopept 95.4 0.052 1.1E-06 26.2 4.0 25 223-247 2-26 (36)
267 KOG1538 Uncharacterized conser 95.4 0.55 1.2E-05 38.9 11.5 221 6-246 552-799 (1081)
268 COG4649 Uncharacterized protei 95.4 0.52 1.1E-05 32.2 14.3 122 57-178 70-195 (221)
269 PF13176 TPR_7: Tetratricopept 95.4 0.053 1.1E-06 26.2 4.0 25 48-72 2-26 (36)
270 PF09205 DUF1955: Domain of un 95.3 0.47 1E-05 30.8 14.0 140 21-182 13-152 (161)
271 PF02284 COX5A: Cytochrome c o 95.2 0.25 5.4E-06 30.2 6.9 47 168-214 28-74 (108)
272 PF13170 DUF4003: Protein of u 95.1 1 2.2E-05 34.1 19.3 133 96-230 78-227 (297)
273 PF13512 TPR_18: Tetratricopep 95.1 0.57 1.2E-05 30.9 11.3 25 120-144 52-76 (142)
274 cd00923 Cyt_c_Oxidase_Va Cytoc 95.1 0.36 7.7E-06 29.2 7.3 46 168-213 25-70 (103)
275 KOG1941 Acetylcholine receptor 95.0 1.3 2.7E-05 34.2 14.1 226 21-247 17-273 (518)
276 KOG1130 Predicted G-alpha GTPa 95.0 0.3 6.5E-06 38.1 8.6 238 9-247 14-302 (639)
277 KOG2280 Vacuolar assembly/sort 94.8 2.2 4.7E-05 36.2 17.0 110 117-245 686-795 (829)
278 PF09613 HrpB1_HrpK: Bacterial 94.8 0.77 1.7E-05 30.9 13.0 20 125-144 54-73 (160)
279 COG3898 Uncharacterized membra 94.7 1.6 3.5E-05 34.1 19.6 185 21-214 165-392 (531)
280 PF04184 ST7: ST7 protein; In 94.7 1.9 4E-05 34.8 16.5 79 116-194 260-340 (539)
281 PF00637 Clathrin: Region in C 94.6 0.038 8.2E-07 36.6 3.0 83 52-141 14-96 (143)
282 KOG2280 Vacuolar assembly/sort 94.5 2.6 5.6E-05 35.8 15.0 87 151-247 685-771 (829)
283 PF00637 Clathrin: Region in C 94.5 0.028 6.1E-07 37.3 2.1 86 15-107 12-97 (143)
284 PF08631 SPO22: Meiosis protei 94.2 1.7 3.8E-05 32.6 20.6 164 55-221 3-193 (278)
285 PF09613 HrpB1_HrpK: Bacterial 94.2 1.1 2.4E-05 30.2 11.5 120 116-241 8-130 (160)
286 PF13431 TPR_17: Tetratricopep 94.1 0.059 1.3E-06 25.7 2.2 20 185-204 13-32 (34)
287 cd00923 Cyt_c_Oxidase_Va Cytoc 94.1 0.7 1.5E-05 28.0 7.0 45 133-177 25-69 (103)
288 PF13431 TPR_17: Tetratricopep 94.1 0.092 2E-06 25.0 2.8 22 43-64 11-32 (34)
289 PF11207 DUF2989: Protein of u 94.0 1.4 3.1E-05 30.9 9.9 78 161-240 118-198 (203)
290 KOG1550 Extracellular protein 93.8 3.5 7.7E-05 34.4 17.6 178 61-250 228-427 (552)
291 KOG1920 IkappaB kinase complex 93.7 5.1 0.00011 36.1 16.0 81 123-213 947-1027(1265)
292 KOG1920 IkappaB kinase complex 93.5 5.6 0.00012 35.8 18.5 81 154-246 943-1025(1265)
293 PF13374 TPR_10: Tetratricopep 93.4 0.3 6.4E-06 24.1 4.3 28 221-248 3-30 (42)
294 PF04184 ST7: ST7 protein; In 93.4 3.6 7.7E-05 33.3 16.8 85 150-234 259-345 (539)
295 PRK15180 Vi polysaccharide bio 93.3 2.8 6E-05 33.8 11.0 118 127-248 301-419 (831)
296 KOG1585 Protein required for f 93.3 2.3 5E-05 31.0 16.5 195 46-244 32-251 (308)
297 KOG0276 Vesicle coat complex C 93.2 2.2 4.8E-05 35.3 10.5 150 22-211 598-747 (794)
298 PF13374 TPR_10: Tetratricopep 93.2 0.36 7.7E-06 23.8 4.4 28 186-213 3-30 (42)
299 PF00515 TPR_1: Tetratricopept 93.1 0.4 8.7E-06 22.4 4.3 28 221-248 2-29 (34)
300 PF02284 COX5A: Cytochrome c o 93.1 1.3 2.8E-05 27.3 8.7 44 29-72 29-72 (108)
301 PF00515 TPR_1: Tetratricopept 93.0 0.43 9.3E-06 22.3 4.3 26 48-73 4-29 (34)
302 KOG0276 Vesicle coat complex C 93.0 4.6 9.9E-05 33.6 12.7 132 12-176 616-747 (794)
303 PF07719 TPR_2: Tetratricopept 93.0 0.42 9.2E-06 22.2 4.3 27 222-248 3-29 (34)
304 PF11207 DUF2989: Protein of u 93.0 2.3 5E-05 30.0 9.7 80 54-135 116-198 (203)
305 PF13929 mRNA_stabil: mRNA sta 92.8 3.1 6.7E-05 31.1 15.1 136 95-230 143-288 (292)
306 COG4455 ImpE Protein of avirul 92.7 1.7 3.7E-05 31.0 8.2 51 123-174 9-59 (273)
307 TIGR03504 FimV_Cterm FimV C-te 92.7 0.3 6.6E-06 24.8 3.5 25 226-250 5-29 (44)
308 COG4455 ImpE Protein of avirul 92.6 1.6 3.4E-05 31.2 7.9 79 12-91 3-83 (273)
309 COG4785 NlpI Lipoprotein NlpI, 92.5 2.9 6.3E-05 29.9 16.4 66 79-145 98-163 (297)
310 COG4785 NlpI Lipoprotein NlpI, 92.4 2.9 6.4E-05 29.9 14.9 163 42-215 95-267 (297)
311 PF07719 TPR_2: Tetratricopept 92.4 0.54 1.2E-05 21.8 4.2 26 48-73 4-29 (34)
312 TIGR02561 HrpB1_HrpK type III 92.4 2.2 4.9E-05 28.4 11.3 54 125-180 20-74 (153)
313 PF07163 Pex26: Pex26 protein; 92.2 3.7 8E-05 30.6 9.9 89 50-138 88-181 (309)
314 PF07079 DUF1347: Protein of u 92.2 5.1 0.00011 32.1 23.8 52 195-248 472-523 (549)
315 PHA02875 ankyrin repeat protei 91.9 4.3 9.3E-05 32.4 11.1 80 18-105 7-90 (413)
316 PF13181 TPR_8: Tetratricopept 91.6 0.75 1.6E-05 21.4 4.2 27 222-248 3-29 (34)
317 KOG1941 Acetylcholine receptor 91.5 5.5 0.00012 31.0 11.6 201 12-212 45-273 (518)
318 KOG4077 Cytochrome c oxidase, 91.4 2.4 5.2E-05 27.3 7.0 44 171-214 70-113 (149)
319 PF13762 MNE1: Mitochondrial s 91.4 3 6.4E-05 27.7 8.5 116 6-133 10-133 (145)
320 PF07721 TPR_4: Tetratricopept 91.2 0.45 9.8E-06 20.9 2.9 20 225-244 6-25 (26)
321 PF10345 Cohesin_load: Cohesin 91.0 8.9 0.00019 32.6 21.5 197 42-248 27-253 (608)
322 PF13174 TPR_6: Tetratricopept 90.8 0.63 1.4E-05 21.4 3.4 26 224-249 4-29 (33)
323 TIGR02561 HrpB1_HrpK type III 90.7 3.6 7.7E-05 27.4 11.8 62 81-146 8-75 (153)
324 KOG2041 WD40 repeat protein [G 90.5 10 0.00022 32.4 20.2 190 41-243 848-1080(1189)
325 COG2909 MalT ATP-dependent tra 90.4 12 0.00025 32.8 18.8 226 20-245 425-684 (894)
326 TIGR03504 FimV_Cterm FimV C-te 90.4 1 2.3E-05 22.9 4.0 23 191-213 5-27 (44)
327 PF07079 DUF1347: Protein of u 90.3 8.2 0.00018 31.0 20.9 137 20-161 16-178 (549)
328 COG1747 Uncharacterized N-term 90.2 9 0.0002 31.4 20.1 179 8-194 64-248 (711)
329 PF10579 Rapsyn_N: Rapsyn N-te 89.9 2 4.4E-05 25.0 5.3 48 197-244 18-67 (80)
330 PF13181 TPR_8: Tetratricopept 89.7 1.2 2.7E-05 20.6 4.2 27 47-73 3-29 (34)
331 PHA02875 ankyrin repeat protei 89.4 9.6 0.00021 30.5 12.0 196 3-220 23-230 (413)
332 KOG4234 TPR repeat-containing 89.3 6 0.00013 28.0 8.7 87 91-179 106-197 (271)
333 PF13929 mRNA_stabil: mRNA sta 89.2 7.7 0.00017 29.1 17.6 125 118-245 134-263 (292)
334 KOG4648 Uncharacterized conser 88.8 4.3 9.3E-05 31.2 7.8 89 19-109 106-194 (536)
335 KOG1258 mRNA processing protei 88.5 13 0.00029 30.9 19.6 187 7-199 294-489 (577)
336 KOG4234 TPR repeat-containing 88.4 7.2 0.00016 27.7 10.0 92 54-147 104-200 (271)
337 PF10579 Rapsyn_N: Rapsyn N-te 88.3 2.3 5E-05 24.8 4.8 19 153-171 46-64 (80)
338 PF07163 Pex26: Pex26 protein; 88.2 9 0.0002 28.6 12.5 90 85-174 88-182 (309)
339 PF11846 DUF3366: Domain of un 88.2 4.8 0.0001 28.3 7.6 54 161-214 119-173 (193)
340 KOG1464 COP9 signalosome, subu 88.1 9.1 0.0002 28.5 17.8 176 3-178 19-219 (440)
341 KOG4077 Cytochrome c oxidase, 88.1 5.3 0.00011 25.8 7.3 45 134-178 68-112 (149)
342 KOG1258 mRNA processing protei 88.0 14 0.00031 30.7 20.4 185 44-234 296-489 (577)
343 TIGR02508 type_III_yscG type I 87.2 5.1 0.00011 24.7 7.4 53 87-145 46-98 (115)
344 KOG4648 Uncharacterized conser 86.9 9.4 0.0002 29.5 8.6 51 124-175 106-156 (536)
345 COG0735 Fur Fe2+/Zn2+ uptake r 86.9 7.2 0.00016 26.0 7.6 64 31-95 7-70 (145)
346 PRK15180 Vi polysaccharide bio 86.6 16 0.00035 29.8 14.9 126 17-146 296-422 (831)
347 PF14689 SPOB_a: Sensor_kinase 86.6 3 6.5E-05 23.1 4.6 30 184-213 22-51 (62)
348 PF04097 Nic96: Nup93/Nic96; 86.3 20 0.00043 30.6 13.9 229 16-254 264-536 (613)
349 PF10345 Cohesin_load: Cohesin 86.0 21 0.00045 30.5 18.5 183 29-212 40-252 (608)
350 COG3947 Response regulator con 85.2 14 0.00031 27.9 13.4 157 96-255 149-353 (361)
351 PF11848 DUF3368: Domain of un 85.0 3.9 8.4E-05 21.2 5.0 32 196-227 13-44 (48)
352 PRK09687 putative lyase; Provi 84.7 15 0.00033 27.7 23.2 220 7-249 34-263 (280)
353 COG0735 Fur Fe2+/Zn2+ uptake r 84.6 9 0.0002 25.6 7.0 45 155-199 25-69 (145)
354 PRK10564 maltose regulon perip 84.0 3.8 8.1E-05 30.9 5.4 39 187-225 259-297 (303)
355 PF11846 DUF3366: Domain of un 84.0 11 0.00025 26.4 7.8 33 147-179 141-173 (193)
356 PF11848 DUF3368: Domain of un 83.8 4.5 9.7E-05 21.0 5.1 33 21-53 13-45 (48)
357 PF08424 NRDE-2: NRDE-2, neces 83.6 18 0.0004 27.9 14.8 97 42-140 16-127 (321)
358 KOG4567 GTPase-activating prot 83.4 13 0.00028 28.3 7.8 70 170-244 263-342 (370)
359 smart00028 TPR Tetratricopepti 81.7 3.3 7.2E-05 17.9 3.5 27 222-248 3-29 (34)
360 PRK09687 putative lyase; Provi 81.6 20 0.00044 27.0 25.0 17 149-165 205-221 (280)
361 PF13762 MNE1: Mitochondrial s 81.6 13 0.00028 24.8 10.2 99 70-168 27-133 (145)
362 COG5159 RPN6 26S proteasome re 81.4 21 0.00045 27.0 11.7 24 224-247 129-152 (421)
363 PF11817 Foie-gras_1: Foie gra 81.2 19 0.00042 26.5 8.7 64 185-248 178-246 (247)
364 PF06552 TOM20_plant: Plant sp 81.1 16 0.00034 25.4 8.5 96 26-126 7-124 (186)
365 cd08819 CARD_MDA5_2 Caspase ac 81.1 9.4 0.0002 22.8 6.7 15 163-177 49-63 (88)
366 PF14689 SPOB_a: Sensor_kinase 80.8 7.5 0.00016 21.5 5.7 29 219-247 22-50 (62)
367 KOG2066 Vacuolar assembly/sort 80.2 39 0.00085 29.4 14.0 151 17-178 363-533 (846)
368 cd08819 CARD_MDA5_2 Caspase ac 80.0 10 0.00023 22.6 7.3 15 198-212 49-63 (88)
369 PF11663 Toxin_YhaV: Toxin wit 80.0 3.4 7.4E-05 26.9 3.5 18 62-79 112-129 (140)
370 PF07575 Nucleopor_Nup85: Nup8 79.4 31 0.00068 29.2 9.8 23 232-254 507-529 (566)
371 PF08424 NRDE-2: NRDE-2, neces 78.9 28 0.0006 26.9 17.3 22 230-251 164-185 (321)
372 PF11663 Toxin_YhaV: Toxin wit 78.9 2.6 5.7E-05 27.4 2.7 28 199-228 109-136 (140)
373 KOG4507 Uncharacterized conser 78.8 20 0.00044 30.1 8.1 87 162-249 619-705 (886)
374 PRK09462 fur ferric uptake reg 78.7 11 0.00023 25.2 5.8 61 35-96 7-68 (148)
375 PF09477 Type_III_YscG: Bacter 78.5 14 0.0003 23.2 9.5 81 23-110 19-99 (116)
376 PF12796 Ank_2: Ankyrin repeat 78.3 8.6 0.00019 22.7 4.9 58 191-257 29-89 (89)
377 KOG0686 COP9 signalosome, subu 77.9 34 0.00073 27.3 16.1 174 47-228 152-352 (466)
378 PF09454 Vps23_core: Vps23 cor 77.7 7.1 0.00015 21.9 3.9 49 7-56 5-53 (65)
379 KOG0991 Replication factor C, 77.6 25 0.00055 25.8 9.4 140 13-162 133-284 (333)
380 COG2976 Uncharacterized protei 77.3 23 0.0005 25.1 15.5 93 121-215 95-189 (207)
381 KOG2066 Vacuolar assembly/sort 77.1 50 0.0011 28.8 12.8 151 52-213 363-533 (846)
382 KOG4567 GTPase-activating prot 76.9 31 0.00067 26.4 7.9 73 65-142 263-345 (370)
383 KOG0687 26S proteasome regulat 76.8 32 0.0007 26.6 11.9 135 5-143 65-209 (393)
384 PRK10564 maltose regulon perip 76.8 7.9 0.00017 29.3 5.0 42 148-189 254-296 (303)
385 PF10366 Vps39_1: Vacuolar sor 76.5 16 0.00035 22.9 7.2 26 153-178 42-67 (108)
386 KOG1464 COP9 signalosome, subu 76.4 30 0.00065 26.0 15.5 205 39-244 20-255 (440)
387 COG5159 RPN6 26S proteasome re 76.1 32 0.00068 26.1 14.8 198 16-213 9-234 (421)
388 PF09868 DUF2095: Uncharacteri 75.5 18 0.00038 22.9 5.6 24 52-75 68-91 (128)
389 PF07575 Nucleopor_Nup85: Nup8 75.3 23 0.0005 29.9 8.0 21 164-184 509-529 (566)
390 PF12862 Apc5: Anaphase-promot 74.8 16 0.00035 22.1 6.9 22 192-213 48-69 (94)
391 COG5108 RPO41 Mitochondrial DN 74.8 33 0.00071 29.4 8.3 75 15-92 33-115 (1117)
392 KOG4507 Uncharacterized conser 74.7 16 0.00034 30.7 6.5 98 58-157 620-717 (886)
393 PRK09857 putative transposase; 74.5 36 0.00078 26.0 9.6 65 188-253 209-273 (292)
394 PF06552 TOM20_plant: Plant sp 74.1 27 0.00058 24.4 10.9 27 202-230 97-123 (186)
395 TIGR02508 type_III_yscG type I 74.1 18 0.0004 22.4 9.2 79 95-180 20-98 (115)
396 COG3947 Response regulator con 73.5 38 0.00082 25.8 16.6 71 152-223 281-356 (361)
397 COG0790 FOG: TPR repeat, SEL1 72.9 38 0.00082 25.5 23.1 150 23-181 54-222 (292)
398 PRK11639 zinc uptake transcrip 72.7 28 0.00061 23.9 7.3 62 141-203 17-78 (169)
399 PF04097 Nic96: Nup93/Nic96; 72.4 62 0.0014 27.8 15.4 64 9-74 111-181 (613)
400 PF04762 IKI3: IKI3 family; I 72.0 79 0.0017 28.8 11.7 28 117-144 814-843 (928)
401 PF04090 RNA_pol_I_TF: RNA pol 71.7 33 0.00072 24.4 7.1 49 12-61 43-92 (199)
402 cd07153 Fur_like Ferric uptake 71.2 22 0.00048 22.4 5.7 41 19-59 9-49 (116)
403 PF01475 FUR: Ferric uptake re 70.4 20 0.00043 22.8 5.3 44 51-94 13-56 (120)
404 PF09670 Cas_Cas02710: CRISPR- 69.7 55 0.0012 26.1 11.0 56 123-179 139-198 (379)
405 PF10475 DUF2450: Protein of u 69.4 48 0.001 25.3 10.2 18 184-201 196-213 (291)
406 cd00280 TRFH Telomeric Repeat 69.3 36 0.00079 23.8 8.3 20 159-178 120-139 (200)
407 PF11817 Foie-gras_1: Foie gra 69.3 43 0.00094 24.7 8.1 57 84-140 182-243 (247)
408 KOG0686 COP9 signalosome, subu 69.0 59 0.0013 26.1 15.4 158 12-178 152-332 (466)
409 PF12862 Apc5: Anaphase-promot 68.7 23 0.00051 21.4 6.6 54 20-73 8-69 (94)
410 PF09670 Cas_Cas02710: CRISPR- 68.4 59 0.0013 25.9 12.4 57 17-74 138-198 (379)
411 COG0790 FOG: TPR repeat, SEL1 68.3 49 0.0011 24.9 21.9 184 57-253 53-270 (292)
412 KOG2063 Vacuolar assembly/sort 67.6 94 0.002 28.0 13.7 116 82-197 506-638 (877)
413 cd07153 Fur_like Ferric uptake 67.1 19 0.00042 22.6 4.8 47 156-202 6-52 (116)
414 KOG2063 Vacuolar assembly/sort 67.0 97 0.0021 27.9 19.8 187 12-198 506-745 (877)
415 COG5108 RPO41 Mitochondrial DN 66.9 85 0.0018 27.2 9.1 90 120-212 33-130 (1117)
416 cd00280 TRFH Telomeric Repeat 66.6 42 0.00091 23.5 7.7 21 88-108 119-139 (200)
417 PF02847 MA3: MA3 domain; Int 66.2 30 0.00064 21.6 9.0 23 119-141 6-28 (113)
418 PF05944 Phage_term_smal: Phag 65.9 35 0.00076 22.4 6.4 30 48-77 51-80 (132)
419 PRK11619 lytic murein transgly 65.7 90 0.002 27.1 21.7 228 23-256 254-512 (644)
420 KOG0890 Protein kinase of the 65.7 1.6E+02 0.0034 29.9 15.7 150 15-174 1388-1542(2382)
421 PRK11639 zinc uptake transcrip 65.7 41 0.0009 23.1 7.8 60 36-96 17-76 (169)
422 PF01475 FUR: Ferric uptake re 65.7 22 0.00048 22.6 4.8 46 15-60 12-57 (120)
423 PRK12798 chemotaxis protein; R 65.4 71 0.0015 25.7 19.5 68 185-254 257-329 (421)
424 COG2976 Uncharacterized protei 64.8 48 0.001 23.6 18.2 88 88-180 97-189 (207)
425 COG4003 Uncharacterized protei 64.7 27 0.00058 20.6 4.8 24 52-75 38-61 (98)
426 KOG1308 Hsp70-interacting prot 64.2 4.4 9.5E-05 31.1 1.5 86 23-111 127-213 (377)
427 KOG1308 Hsp70-interacting prot 64.0 6.7 0.00014 30.2 2.4 89 93-183 127-215 (377)
428 PRK08691 DNA polymerase III su 64.0 1E+02 0.0022 27.0 10.9 32 145-178 195-226 (709)
429 KOG0687 26S proteasome regulat 63.8 67 0.0015 24.9 10.8 152 94-247 36-208 (393)
430 KOG0376 Serine-threonine phosp 63.8 30 0.00066 28.1 5.9 105 87-196 11-116 (476)
431 PRK09462 fur ferric uptake reg 63.2 42 0.00092 22.4 7.6 59 71-130 8-67 (148)
432 KOG4642 Chaperone-dependent E3 63.0 60 0.0013 24.0 10.6 82 91-176 21-104 (284)
433 PRK09857 putative transposase; 62.7 67 0.0015 24.5 8.8 66 153-219 209-274 (292)
434 PF03745 DUF309: Domain of unk 62.6 25 0.00053 19.5 5.8 47 196-242 10-61 (62)
435 smart00386 HAT HAT (Half-A-TPR 62.5 13 0.00029 16.4 3.9 27 25-52 2-28 (33)
436 PF09986 DUF2225: Uncharacteri 61.4 59 0.0013 23.5 11.3 25 226-250 171-195 (214)
437 KOG3364 Membrane protein invol 61.4 45 0.00098 22.1 9.3 67 148-214 30-100 (149)
438 PRK11619 lytic murein transgly 60.2 1.2E+02 0.0025 26.4 23.3 118 128-248 254-374 (644)
439 COG2909 MalT ATP-dependent tra 60.0 1.3E+02 0.0028 27.0 17.7 89 160-248 425-525 (894)
440 KOG2297 Predicted translation 59.5 80 0.0017 24.4 13.9 20 185-204 321-340 (412)
441 KOG2396 HAT (Half-A-TPR) repea 59.2 1E+02 0.0023 25.6 19.5 98 148-248 457-558 (568)
442 PF08311 Mad3_BUB1_I: Mad3/BUB 59.2 47 0.001 21.6 8.1 85 18-105 34-124 (126)
443 PRK14951 DNA polymerase III su 58.3 1.2E+02 0.0027 26.1 11.0 18 199-216 264-281 (618)
444 PF02184 HAT: HAT (Half-A-TPR) 58.0 20 0.00042 16.8 3.4 25 200-226 2-26 (32)
445 PF08311 Mad3_BUB1_I: Mad3/BUB 57.9 49 0.0011 21.4 9.1 43 203-245 81-124 (126)
446 PF00244 14-3-3: 14-3-3 protei 57.4 75 0.0016 23.4 8.9 59 15-73 6-65 (236)
447 PF07678 A2M_comp: A-macroglob 56.9 77 0.0017 23.4 11.2 82 131-214 115-221 (246)
448 COG5187 RPN7 26S proteasome re 56.8 87 0.0019 24.0 11.6 157 6-164 77-241 (412)
449 PF11838 ERAP1_C: ERAP1-like C 56.6 88 0.0019 24.0 18.6 109 131-244 146-261 (324)
450 PF12069 DUF3549: Protein of u 56.2 96 0.0021 24.3 14.1 165 41-213 122-294 (340)
451 PF04762 IKI3: IKI3 family; I 56.1 1.6E+02 0.0036 26.9 12.5 30 150-179 812-843 (928)
452 PRK13342 recombination factor 55.9 1.1E+02 0.0023 24.8 18.3 56 163-218 243-303 (413)
453 PF04910 Tcf25: Transcriptiona 55.8 1E+02 0.0022 24.4 18.9 30 77-106 37-66 (360)
454 KOG3636 Uncharacterized conser 55.1 1.2E+02 0.0025 24.8 7.8 66 5-75 148-213 (669)
455 KOG1839 Uncharacterized protei 55.1 1.9E+02 0.0041 27.3 11.5 152 57-208 944-1122(1236)
456 PF02847 MA3: MA3 domain; Int 55.0 50 0.0011 20.6 8.8 24 84-107 6-29 (113)
457 KOG4642 Chaperone-dependent E3 54.0 89 0.0019 23.2 10.7 116 20-139 20-141 (284)
458 PF07678 A2M_comp: A-macroglob 53.6 89 0.0019 23.1 9.3 81 167-249 116-221 (246)
459 KOG0989 Replication factor C, 53.6 1E+02 0.0022 23.8 10.4 80 172-253 197-288 (346)
460 PF02259 FAT: FAT domain; Int 53.0 1.1E+02 0.0023 23.8 20.7 66 113-178 144-212 (352)
461 KOG0890 Protein kinase of the 52.9 2.7E+02 0.0059 28.5 19.9 63 185-250 1670-1732(2382)
462 PRK10941 hypothetical protein; 52.9 98 0.0021 23.4 10.8 77 48-125 184-261 (269)
463 PF00244 14-3-3: 14-3-3 protei 52.5 91 0.002 22.9 11.3 57 50-106 6-63 (236)
464 PF09454 Vps23_core: Vps23 cor 52.4 41 0.00089 18.9 4.9 29 152-180 10-38 (65)
465 PHA03100 ankyrin repeat protei 52.3 1.3E+02 0.0028 24.7 10.3 14 242-255 265-278 (480)
466 KOG0991 Replication factor C, 51.5 98 0.0021 23.0 12.3 103 125-231 169-283 (333)
467 KOG1839 Uncharacterized protei 51.2 2.2E+02 0.0048 26.9 11.8 155 90-244 942-1123(1236)
468 KOG2297 Predicted translation 51.1 1.1E+02 0.0025 23.6 15.3 16 152-167 323-338 (412)
469 KOG0376 Serine-threonine phosp 51.1 48 0.001 27.1 5.1 105 17-126 11-116 (476)
470 PF14853 Fis1_TPR_C: Fis1 C-te 51.0 38 0.00082 18.0 6.0 22 192-213 8-29 (53)
471 PHA03100 ankyrin repeat protei 50.7 1.4E+02 0.003 24.5 9.5 24 17-44 39-62 (480)
472 PRK14958 DNA polymerase III su 50.6 1.5E+02 0.0033 24.9 11.1 20 199-218 259-278 (509)
473 PRK10941 hypothetical protein; 50.3 1.1E+02 0.0024 23.1 10.7 78 152-230 183-261 (269)
474 PF09986 DUF2225: Uncharacteri 49.2 99 0.0021 22.3 7.8 25 85-109 170-194 (214)
475 PRK06645 DNA polymerase III su 49.1 1.6E+02 0.0035 24.7 10.8 73 144-219 203-291 (507)
476 KOG2422 Uncharacterized conser 49.0 1.7E+02 0.0037 24.9 16.1 55 123-177 350-405 (665)
477 COG2137 OraA Uncharacterized p 48.9 89 0.0019 21.7 11.8 63 170-234 88-151 (174)
478 PF10366 Vps39_1: Vacuolar sor 48.6 67 0.0014 20.2 8.5 26 48-73 42-67 (108)
479 PF15297 CKAP2_C: Cytoskeleton 48.4 1.3E+02 0.0029 23.6 9.9 42 48-89 143-184 (353)
480 PRK13342 recombination factor 48.4 1.5E+02 0.0032 24.1 18.3 55 128-182 243-302 (413)
481 KOG2659 LisH motif-containing 48.3 1.1E+02 0.0023 22.4 9.1 110 101-212 14-130 (228)
482 PF04910 Tcf25: Transcriptiona 47.9 1.4E+02 0.003 23.7 19.6 31 42-72 37-67 (360)
483 PRK14963 DNA polymerase III su 47.5 1.7E+02 0.0037 24.6 10.9 84 167-253 178-274 (504)
484 PRK14700 recombination factor 47.0 1.3E+02 0.0028 23.1 13.2 64 84-147 127-198 (300)
485 KOG3636 Uncharacterized conser 46.9 1.6E+02 0.0035 24.1 11.1 88 4-92 177-272 (669)
486 PF07064 RIC1: RIC1; InterPro 45.8 1.3E+02 0.0027 22.6 16.0 41 13-55 85-125 (258)
487 KOG2396 HAT (Half-A-TPR) repea 45.6 1.8E+02 0.0039 24.3 17.0 99 113-214 457-559 (568)
488 PF07720 TPR_3: Tetratricopept 45.6 36 0.00079 16.3 3.7 22 223-244 4-25 (36)
489 PRK07003 DNA polymerase III su 45.1 2.3E+02 0.005 25.4 10.4 85 167-254 182-279 (830)
490 PF15469 Sec5: Exocyst complex 45.1 1E+02 0.0022 21.4 9.9 20 122-141 93-112 (182)
491 PF02607 B12-binding_2: B12 bi 45.0 60 0.0013 18.6 4.3 32 23-54 14-45 (79)
492 KOG2659 LisH motif-containing 44.8 1.2E+02 0.0027 22.1 9.7 107 65-175 13-128 (228)
493 PF12554 MOZART1: Mitotic-spin 44.7 47 0.001 17.3 2.9 21 233-253 17-37 (48)
494 PF10255 Paf67: RNA polymerase 44.3 1.7E+02 0.0037 23.7 11.7 60 118-177 125-191 (404)
495 PF12926 MOZART2: Mitotic-spin 44.2 70 0.0015 19.2 8.3 42 31-72 29-70 (88)
496 PF13934 ELYS: Nuclear pore co 44.1 1.2E+02 0.0027 22.1 12.3 119 45-172 76-198 (226)
497 COG5191 Uncharacterized conser 43.4 1.2E+02 0.0025 23.7 5.8 76 112-189 104-180 (435)
498 COG5191 Uncharacterized conser 42.9 1E+02 0.0022 23.9 5.5 75 7-83 104-179 (435)
499 PF05944 Phage_term_smal: Phag 42.9 97 0.0021 20.4 6.2 31 187-217 50-80 (132)
500 PF11768 DUF3312: Protein of u 42.2 2.1E+02 0.0046 24.2 11.6 60 119-178 412-472 (545)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.5e-50 Score=334.49 Aligned_cols=254 Identities=20% Similarity=0.322 Sum_probs=144.0
Q ss_pred CCCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh--cCCccc
Q 041259 2 KGKNIKADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLD--SRIEVT 79 (257)
Q Consensus 2 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~ 79 (257)
.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||
T Consensus 499 ~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 344555555555555555555555555555555555555555555555555555555555555555555543 344555
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 041259 80 VVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDG 159 (257)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (257)
..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 041259 160 YLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEA 239 (257)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 239 (257)
|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 55555555555555555555555555566666666666666666666666665555566666666666666666666666
Q ss_pred HHHHHHHHhCCCCCCC
Q 041259 240 IELQNEMMGRGLLSGS 255 (257)
Q Consensus 240 ~~~~~~m~~~~~~~~~ 255 (257)
.++|++|.+.|+.||.
T Consensus 739 lelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 739 LEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHHHHHHHcCCCCCH
Confidence 6666666666666553
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-49 Score=330.48 Aligned_cols=255 Identities=22% Similarity=0.306 Sum_probs=243.0
Q ss_pred CCCCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccH
Q 041259 1 MKGKNIKADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTV 80 (257)
Q Consensus 1 M~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (257)
|++.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhccc--CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 041259 81 VTFCVLIDGLCKSGLVREAIDYFGRMPD--FGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALID 158 (257)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (257)
.+|+.++.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|+.|.+.++.|+..+|+.+|.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999999999999975 67889999999999999999999999999999999999999999999999
Q ss_pred HHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHH
Q 041259 159 GYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDE 238 (257)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (257)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ee 702 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCC
Q 041259 239 AIELQNEMMGRGLLSGS 255 (257)
Q Consensus 239 a~~~~~~m~~~~~~~~~ 255 (257)
|.++|++|.+.|+.||.
T Consensus 703 A~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 703 ALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHHHHHHHHHcCCCCCH
Confidence 99999999999999884
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.4e-44 Score=295.49 Aligned_cols=242 Identities=23% Similarity=0.317 Sum_probs=195.9
Q ss_pred CCCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHH
Q 041259 2 KGKNIKADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVV 81 (257)
Q Consensus 2 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (257)
.+.|+.||..+|+.||.+|++.|++++|.++|+.|. ++|..+|+.++.+|++.|++++|+++|++|.+.|+.||..
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 345777778888888888888888888888888775 3577888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 041259 82 TFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYL 161 (257)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (257)
||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.+ ||..+|+.+|.+|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~ 402 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888764 47778888888888
Q ss_pred cccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 041259 162 KHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIG-RGILPDEILCISLLKKHYERGNMDEAI 240 (257)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 240 (257)
+.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 8888888888888888888888888888888888888888888888888875 478888888888888888888888888
Q ss_pred HHHHHHHhCCCCCC
Q 041259 241 ELQNEMMGRGLLSG 254 (257)
Q Consensus 241 ~~~~~m~~~~~~~~ 254 (257)
+++++| ++.|+
T Consensus 483 ~~~~~~---~~~p~ 493 (697)
T PLN03081 483 AMIRRA---PFKPT 493 (697)
T ss_pred HHHHHC---CCCCC
Confidence 877655 34454
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-43 Score=290.98 Aligned_cols=242 Identities=25% Similarity=0.384 Sum_probs=209.2
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHH-----------------------------------HHHHH
Q 041259 7 KADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTV-----------------------------------ICTTL 51 (257)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------------------------------~~~~l 51 (257)
+||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+.. +|+.|
T Consensus 186 ~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~L 265 (697)
T PLN03081 186 ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL 265 (697)
T ss_pred CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHH
Confidence 4788888888888888888888888888887766655544 45677
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcH
Q 041259 52 MDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCI 131 (257)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (257)
+.+|++.|++++|.++|++|. ++|..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 778888888888888888885 3478888888888888888888989998888888888988999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 041259 132 ERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEM 211 (257)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 211 (257)
++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|+.++|.++|++|
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998888888888888999999999999999999999888854 68889999999999999999999999999
Q ss_pred HhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCCC
Q 041259 212 IGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG-RGLLSGSK 256 (257)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~ 256 (257)
.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 9999999999999999999999999999999999986 68988853
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-42 Score=292.17 Aligned_cols=72 Identities=26% Similarity=0.361 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCC
Q 041259 184 DLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMM-GRGLLSGS 255 (257)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~ 255 (257)
|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+.
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 4445666666666777777777777777777777777777777777777777777777777776 46777764
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-41 Score=284.62 Aligned_cols=242 Identities=18% Similarity=0.205 Sum_probs=187.1
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHH
Q 041259 7 KADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVL 86 (257)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (257)
+||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|+..+++..+.+++..+.+.|..|+..+++.+
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 47888888888888888888888888888888888888888888887777777777777777777777777777777777
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCH
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESF 166 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (257)
+.+|++.|+++.|.++|++|.. ||..+|+++|.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 7777777777777777777753 566777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041259 167 KEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEM 246 (257)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 246 (257)
+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|.++|++|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777653 56677777777777777777777777777
Q ss_pred HhCCCCCCCC
Q 041259 247 MGRGLLSGSK 256 (257)
Q Consensus 247 ~~~~~~~~~~ 256 (257)
.+.|+.||..
T Consensus 381 ~~~g~~Pd~~ 390 (857)
T PLN03077 381 EQDNVSPDEI 390 (857)
T ss_pred HHhCCCCCce
Confidence 7777777654
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1e-21 Score=152.81 Aligned_cols=239 Identities=15% Similarity=0.125 Sum_probs=152.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCccc----HHHHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVT----VVTFCVLI 87 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll 87 (257)
.+..+...+.+.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+.
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 45556666666666666666666666542 34455666666666666777777777666665432221 12334455
Q ss_pred HHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHH
Q 041259 88 DGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFK 167 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (257)
..+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.++++...+......+++.++.+|...|+++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 56666677777777777665543 23345566666777777777777777777765543322455666777777777777
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 041259 168 EALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYE---RGNMDEAIELQN 244 (257)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~ 244 (257)
+|...++.+.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++
T Consensus 267 ~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 267 EGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 7777777776653 44455566777777777777777777777664 4666667666665553 447777777777
Q ss_pred HHHhCCCCCCCC
Q 041259 245 EMMGRGLLSGSK 256 (257)
Q Consensus 245 ~m~~~~~~~~~~ 256 (257)
+|.++++.|++.
T Consensus 343 ~~~~~~~~~~p~ 354 (389)
T PRK11788 343 DLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCCCC
Confidence 777777776654
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.7e-20 Score=144.95 Aligned_cols=237 Identities=16% Similarity=0.133 Sum_probs=186.6
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTAN---TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCV 85 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (257)
+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|++++|..+|+++.+.. +++..++..
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 146 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQ 146 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHH
Confidence 455788888888899999999999988887532221 2467788888889999999999999988753 446778888
Q ss_pred HHHHHHhcCcHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 041259 86 LIDGLCKSGLVREAIDYFGRMPDFGLHPN----VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYL 161 (257)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (257)
++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...|++++|...++++.+.... +...+..+...+.
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 225 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLAL 225 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHH
Confidence 89999999999999999998876542221 124456677788889999999999998876433 5667778888899
Q ss_pred cccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 041259 162 KHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIE 241 (257)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 241 (257)
..|++++|.++++++.+.+......++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|.+
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999887654333567788889999999999999999998875 4666667888888999999999999
Q ss_pred HHHHHHhC
Q 041259 242 LQNEMMGR 249 (257)
Q Consensus 242 ~~~~m~~~ 249 (257)
+++++.+.
T Consensus 304 ~l~~~l~~ 311 (389)
T PRK11788 304 LLREQLRR 311 (389)
T ss_pred HHHHHHHh
Confidence 99988765
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.86 E-value=1.5e-18 Score=148.52 Aligned_cols=233 Identities=15% Similarity=0.099 Sum_probs=120.5
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
+...+..+...+.+.|++++|..+++.+.+.. +.+..++..++..+...|++++|.++++.+.+.. +.+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 34455556666666666666666666665542 3345555555555555555555555555555443 234444555555
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKE 168 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (257)
.+...|++++|.+.|+++...+ |+..++..+..++.+.|++++|.+.++.+.+..+. +...+..+...|...|++++
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHH
Confidence 5555555555555555554432 33334444444555555555555555544443322 44444444444444555555
Q ss_pred HHHHHHHHHHcCCC--------------------------------ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 041259 169 ALNLKNRMTEVGVD--------------------------------LDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGI 216 (257)
Q Consensus 169 a~~~~~~~~~~~~~--------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 216 (257)
|...|+++.+..+. -+..++..+...+...|++++|..+++++.+.+.
T Consensus 789 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 789 AIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55555444443221 1333444455555555666666666666655432
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 217 LPDEILCISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
.+..++..+..++.+.|++++|.+++++|+
T Consensus 869 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 869 -EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 255555555666666666666666665554
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.85 E-value=9.8e-18 Score=143.48 Aligned_cols=232 Identities=15% Similarity=0.144 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGL 90 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (257)
..+..++..+.+.|++++|.++++.+.+.. +.+..+|..+..++...|++++|...|+++.+.. +.+...+..+..++
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAY 645 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344455555555555555555555555432 3445555666666666666666666666655442 22444555555666
Q ss_pred HhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHH
Q 041259 91 CKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEAL 170 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (257)
...|++++|..+++++.+.. +.+..++..+...+...|++++|.++++.+...+.. +...+..+...+...|++++|.
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHH
Confidence 66666666666666555432 334455555556666666666666666665554432 4455555666666666666666
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 171 NLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
..++.+...+ |+..++..+..++...|++++|...++++.+. .+.+...+..+...|...|++++|.+.|+++.+.
T Consensus 724 ~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 724 QAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 6666665543 23345555666666666666666666666554 2334555666666666666666666666666554
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=1e-15 Score=125.62 Aligned_cols=236 Identities=14% Similarity=0.056 Sum_probs=192.0
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
+...|+.+...+...|++++|+..++...+.. +.....|..+..++...|++++|+..|++..+.. +.+..+|..+..
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~ 407 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQ 407 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567778888889999999999999998864 3446688889999999999999999999998764 346788999999
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKE 168 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (257)
.+...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|+...+..+. +...++.+..++...|++++
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHH
Confidence 9999999999999999998764 456777888889999999999999999998876443 67889999999999999999
Q ss_pred HHHHHHHHHHcCCCccHH------HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 041259 169 ALNLKNRMTEVGVDLDLN------AYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIEL 242 (257)
Q Consensus 169 a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 242 (257)
|...|+...+.....+.. .++.....+...|++++|..++++..... +.+...+..+...+.+.|++++|.+.
T Consensus 486 A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 486 AIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 999999988764321111 12222333445799999999999988763 23445788899999999999999999
Q ss_pred HHHHHhC
Q 041259 243 QNEMMGR 249 (257)
Q Consensus 243 ~~~m~~~ 249 (257)
|++..+.
T Consensus 565 ~e~A~~l 571 (615)
T TIGR00990 565 FERAAEL 571 (615)
T ss_pred HHHHHHH
Confidence 9988653
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=1.2e-15 Score=125.17 Aligned_cols=155 Identities=14% Similarity=0.066 Sum_probs=67.9
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHH----HHHHHHHhhhCCCCCCHHHHHHHHHHHHccc
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIER----ARNLFDEMPKRDMIPDTTAYTALIDGYLKHE 164 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (257)
.+.+.|++++|...+++..... +.+...+..+...+...|++++ |...++...+..+. +...+..+...+...|
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTG 298 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCC
Confidence 3333444444444444433322 2233333444444444444443 44444444443322 3444444445555555
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHhcCCHHHHHHHH
Q 041259 165 SFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEI-LCISLLKKHYERGNMDEAIELQ 243 (257)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~ 243 (257)
++++|...+++..+..+. +...+..+..++...|++++|...++++... .|+.. .+..+..++...|++++|.+.|
T Consensus 299 ~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 299 QNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555554443322 3334444445555555555555555555443 22221 1222334445555555555555
Q ss_pred HHHHh
Q 041259 244 NEMMG 248 (257)
Q Consensus 244 ~~m~~ 248 (257)
++..+
T Consensus 376 ~~al~ 380 (656)
T PRK15174 376 EHYIQ 380 (656)
T ss_pred HHHHH
Confidence 55443
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=1.6e-15 Score=124.55 Aligned_cols=235 Identities=12% Similarity=0.012 Sum_probs=193.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ .
T Consensus 109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~ 185 (656)
T PRK15174 109 QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-L 185 (656)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-H
Confidence 45678888899999999999999999999863 556778889999999999999999999988766433 33344333 3
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKE 168 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (257)
.+...|++++|...++.+......++...+..+...+...|++++|...++........ +...+..+...+...|++++
T Consensus 186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchh
Confidence 47889999999999999876542344445556677889999999999999999887654 67888889999999999986
Q ss_pred ----HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041259 169 ----ALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQN 244 (257)
Q Consensus 169 ----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 244 (257)
|...+++..+..+. +...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...++
T Consensus 265 A~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred hHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 89999999887543 67889999999999999999999999999863 3345667778899999999999999999
Q ss_pred HHHhC
Q 041259 245 EMMGR 249 (257)
Q Consensus 245 ~m~~~ 249 (257)
.+.+.
T Consensus 343 ~al~~ 347 (656)
T PRK15174 343 QLARE 347 (656)
T ss_pred HHHHh
Confidence 98864
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=1.1e-14 Score=119.65 Aligned_cols=239 Identities=14% Similarity=0.040 Sum_probs=160.4
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHH----------------
Q 041259 6 IKADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLD---------------- 69 (257)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------- 69 (257)
+.|+...|..+..++.+.|++++|++.++...+.. +.+...|..+..++...|++++|+..|.
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 45666777777778888888888888888877753 3445566666667777777666654332
Q ss_pred --------------------------------------------------------------------------------
Q 041259 70 -------------------------------------------------------------------------------- 69 (257)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (257)
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence
Q ss_pred ----HHHhcC-Ccc-cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 041259 70 ----EMLDSR-IEV-TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPK 143 (257)
Q Consensus 70 ----~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (257)
+..+.+ ..| ....+..+...+...|++++|...+++..... +.....|..+...+...|++++|...|+...+
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222211 011 22344555555666677777777777766542 22345666677777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHH
Q 041259 144 RDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILC 223 (257)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (257)
.+.. +..+|..+...+...|++++|...|++..+... .+...+..+..++.+.|++++|...+++.++. .+.+...+
T Consensus 394 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~ 470 (615)
T TIGR00990 394 LNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVY 470 (615)
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHH
Confidence 6443 566777777777778888888888887777643 25566677777777888888888888877764 23346677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 224 ISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 224 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
..+...+...|++++|++.|++..+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 77777888888888888888876653
No 15
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=4.4e-17 Score=121.03 Aligned_cols=220 Identities=15% Similarity=0.174 Sum_probs=65.5
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHH
Q 041259 20 LCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREA 99 (257)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (257)
....++++.|.+.++.+...+ +-+...+..++.. ...+++++|.++++...+. .+++..+..++..+.+.++++++
T Consensus 54 a~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~ 129 (280)
T PF13429_consen 54 AWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEA 129 (280)
T ss_dssp --------------------------------------------------------------------H-HHHTT-HHHH
T ss_pred ccccccccccccccccccccc-ccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHH
Confidence 334444444444444444432 1123333344433 3444455555444443332 12334444445555555555555
Q ss_pred HHHHHhcccCC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 041259 100 IDYFGRMPDFG-LHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 100 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
..+++.+.... .+.+...|..+...+.+.|+.++|.+.+++..+..+. +......++..+...|+.+++.++++...+
T Consensus 130 ~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 130 EELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 55555543211 1234444455555555555555555555555554332 344455555555555555555555554444
Q ss_pred cCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041259 179 VGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEM 246 (257)
Q Consensus 179 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 246 (257)
.. +.|+..+..+..++...|+.++|..++++..+. .+.|+.....+..++...|+.++|.++..+.
T Consensus 209 ~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 209 AA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp H--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT---------------
T ss_pred HC-cCHHHHHHHHHHHhccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 32 223344455555555555555555555555543 1224444455555555555555555555443
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=6.8e-14 Score=118.24 Aligned_cols=232 Identities=12% Similarity=0.044 Sum_probs=186.8
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
+...|..+..++.. ++.++|...+...... .|+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45667777777766 8899999988888765 366555445555667899999999999998664 445556677788
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKE 168 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (257)
.+.+.|+.++|...+++..+.. +.+...+..+.....+.|++++|...+++..+.. |+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 8899999999999999998764 3343444444445556699999999999998764 467889999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 169 ALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
|...+++..+..+. +...+..+..++...|++++|+..+++..+.. +-+...+..+..++...|++++|+..+++..+
T Consensus 628 A~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999998643 67888888899999999999999999999862 33567888899999999999999999999876
Q ss_pred CC
Q 041259 249 RG 250 (257)
Q Consensus 249 ~~ 250 (257)
..
T Consensus 706 l~ 707 (987)
T PRK09782 706 DI 707 (987)
T ss_pred cC
Confidence 43
No 17
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=1e-16 Score=119.09 Aligned_cols=235 Identities=17% Similarity=0.178 Sum_probs=102.1
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHH
Q 041259 8 ADLPLYGTIIWGLCIESKFEDSKLLLSEMKENG-LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVL 86 (257)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (257)
|+...+ .+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|...++++...+.. ++..+..+
T Consensus 7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l 84 (280)
T PF13429_consen 7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 443334 55788889999999999997655443 2445666677777888899999999999999987533 66677777
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHcccC
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRD-MIPDTTAYTALIDGYLKHES 165 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 165 (257)
+.. ...+++++|.++++...+. .++...+..++..+...++++++..+++.+.... ...+...|..+...+.+.|+
T Consensus 85 ~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 85 IQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred ccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 777 7889999999999887654 3566777888899999999999999999976543 34577888899999999999
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041259 166 FKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNE 245 (257)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (257)
.++|.+.+++..+..+. |......++..+...|+.+++.+++....+.. +.++..+..+..++...|+.++|+.++++
T Consensus 162 ~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 162 PDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence 99999999999997543 67888999999999999999999998888753 45667788899999999999999999999
Q ss_pred HHhC
Q 041259 246 MMGR 249 (257)
Q Consensus 246 m~~~ 249 (257)
..+.
T Consensus 240 ~~~~ 243 (280)
T PF13429_consen 240 ALKL 243 (280)
T ss_dssp HHHH
T ss_pred cccc
Confidence 8763
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.71 E-value=5.9e-15 Score=114.26 Aligned_cols=235 Identities=15% Similarity=0.104 Sum_probs=184.6
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGL 90 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (257)
..|-.|-..|...+.+++|...+.+..... +.....+..+...|..+|..+-|+..|++.++.. +--+..|+.+..++
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanAL 330 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANAL 330 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHH
Confidence 356667777777777888877777776653 3445667777777888888888888888888753 22467889999999
Q ss_pred HhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHH
Q 041259 91 CKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEAL 170 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (257)
...|+..+|...+.+..... +......+.|...|...|.+++|..+|....+-.+. -...++.|...|-++|++++|.
T Consensus 331 kd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 331 KDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred HhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHH
Confidence 99999999999998887764 345567788889999999999999999888775433 4567888999999999999999
Q ss_pred HHHHHHHHcCCCcc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 171 NLKNRMTEVGVDLD-LNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD-EILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 171 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
..+++.... .|+ ...|+.+...|-..|+.+.|...+.+.+.. .|+ ...++.|...|..+|+..+|+.-+++.++
T Consensus 409 ~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 409 MCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 999988774 444 467888888999999999999999888874 455 45788899999999999999999998875
Q ss_pred CCCCCCC
Q 041259 249 RGLLSGS 255 (257)
Q Consensus 249 ~~~~~~~ 255 (257)
+.||.
T Consensus 485 --lkPDf 489 (966)
T KOG4626|consen 485 --LKPDF 489 (966)
T ss_pred --cCCCC
Confidence 34544
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.69 E-value=2.1e-13 Score=119.15 Aligned_cols=238 Identities=15% Similarity=0.140 Sum_probs=171.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh
Q 041259 13 YGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCK 92 (257)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (257)
+..+...+...|++++|.+.|++..+.. |-+...+..+...+.+.|++++|+..++++.+... .+...+..+...+..
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~ 541 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSG 541 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 4455667778899999999999998864 44667788888899999999999999999876532 233433333333444
Q ss_pred cCcHHHHHHHHHhcccCC---------------------------------------CCCCHHHHHHHHHHHHhcCcHHH
Q 041259 93 SGLVREAIDYFGRMPDFG---------------------------------------LHPNVAVYTALIDGLCKKNCIER 133 (257)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~---------------------------------------~~~~~~~~~~l~~~~~~~~~~~~ 133 (257)
.++.++|+..++.+.... .+.+...+..+...+.+.|++++
T Consensus 542 ~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 542 SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 455555555444432110 13445566677888888999999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 134 ARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
|+..|+...+..+. +...+..++..+...|++++|.+.++.+.+... .+..++..+..++...|++++|.++++.+..
T Consensus 622 A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 622 ARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999998887654 778888899999999999999999998776532 2556677778888889999999999998886
Q ss_pred CCC--CC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC
Q 041259 214 RGI--LP---DEILCISLLKKHYERGNMDEAIELQNEMMG-RGLLSG 254 (257)
Q Consensus 214 ~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~ 254 (257)
... .| +...+..+...+...|++++|++.|++.+. .|+.|+
T Consensus 700 ~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 700 QAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred hCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 522 12 223555567788889999999999998764 445443
No 20
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=2.8e-13 Score=105.29 Aligned_cols=221 Identities=15% Similarity=0.091 Sum_probs=162.4
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCccHHHHH--HHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc
Q 041259 18 WGLCIESKFEDSKLLLSEMKENGLTANTVICT--TLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGL 95 (257)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (257)
....+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++++.+.. +-++.....+...|.+.|+
T Consensus 126 ~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gd 202 (398)
T PRK10747 126 EAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGA 202 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHh
Confidence 3346778888888888887764 34543322 33556777788888888888887764 3356677777788888888
Q ss_pred HHHHHHHHHhcccCCCC-----------------------------------------CCHHHHHHHHHHHHhcCcHHHH
Q 041259 96 VREAIDYFGRMPDFGLH-----------------------------------------PNVAVYTALIDGLCKKNCIERA 134 (257)
Q Consensus 96 ~~~a~~~~~~~~~~~~~-----------------------------------------~~~~~~~~l~~~~~~~~~~~~a 134 (257)
+++|.+++..+.+.+.. .+......+...+...|+.++|
T Consensus 203 w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 203 WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHH
Confidence 88888777766544322 2333444566777788888899
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 135 RNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
.+++++..+.. |+... .++.+....++.+++.+..+...+..+ -|+..+..+...|.+.+++++|.+.|+...+.
T Consensus 283 ~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 283 QQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888887743 34422 233444456888888888888887654 36778889999999999999999999999985
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 215 GILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.|+...+..+...+.+.|+.++|.+++++-..
T Consensus 358 --~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 --RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 68999989999999999999999999997654
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.69 E-value=1.6e-13 Score=99.24 Aligned_cols=204 Identities=16% Similarity=0.114 Sum_probs=162.0
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHH
Q 041259 42 TANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTAL 121 (257)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (257)
......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~ 105 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNY 105 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 3446677888888999999999999999887763 3356777888888999999999999998887664 4556677788
Q ss_pred HHHHHhcCcHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCc
Q 041259 122 IDGLCKKNCIERARNLFDEMPKRDMI-PDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGH 200 (257)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 200 (257)
...+...|++++|.+.++........ .....+..+...+...|++++|...+.+..+.... +...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCC
Confidence 88889999999999999988764322 23456777788888999999999999988876432 56678888889999999
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 201 LQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
+++|...+++.... .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988876 3445666777778888899999999988877543
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.68 E-value=2.9e-13 Score=97.89 Aligned_cols=201 Identities=13% Similarity=0.067 Sum_probs=169.3
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
....+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35668888899999999999999999998764 4567788889999999999999999999998864 335677888899
Q ss_pred HHHhcCcHHHHHHHHHhcccCCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGL-HPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFK 167 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (257)
.+...|++++|.+.+++...... +.....+..+...+...|++++|...+++....... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 99999999999999999876432 223456777888999999999999999998887543 5678888999999999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 168 EALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999998887 344677777888889999999999999887765
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.1e-13 Score=102.94 Aligned_cols=240 Identities=15% Similarity=0.238 Sum_probs=191.8
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHH
Q 041259 7 KADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVL 86 (257)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (257)
+.+..+|.++|.++++-...++|.+++++......+.+..+||.+|.+-.-... .+++.+|......||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 447789999999999999999999999999888788999999999987544332 7888999999999999999999
Q ss_pred HHHHHhcCcHHH----HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHH-HHHHHHHhh----hCCCCC----CHHHH
Q 041259 87 IDGLCKSGLVRE----AIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIER-ARNLFDEMP----KRDMIP----DTTAY 153 (257)
Q Consensus 87 l~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~----~~~~~~----~~~~~ 153 (257)
+++..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ |..++.++. .+.+.| |...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 56788899999999999999999999999888754 444444443 222333 44556
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHcC----CCcc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 041259 154 TALIDGYLKHESFKEALNLKNRMTEVG----VDLD---LNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISL 226 (257)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 226 (257)
...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.....++.|.-.-+-|+..+..-+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 677788888888888888766543211 2233 234566777778888889999999999877677888888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 227 LKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 227 ~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
+++....|.++-.-++|.+++..|
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhh
Confidence 999999999999999999998876
No 24
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.66 E-value=7.3e-15 Score=117.54 Aligned_cols=236 Identities=14% Similarity=0.137 Sum_probs=169.6
Q ss_pred CCCCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccH
Q 041259 1 MKGKNIKADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTV 80 (257)
Q Consensus 1 M~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (257)
|...|+.|+-+||..+|.-|+..|+++.|- +|.-|.-...+.+...++.++......++.+.+. .|..
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 346799999999999999999999999998 9999988888888999999999988888877775 6788
Q ss_pred HHHHHHHHHHHhcCcHHH---HHHHHHhc----ccCCCCCCHHH--------------HHHHHHHHHhcCcHHHHHHHHH
Q 041259 81 VTFCVLIDGLCKSGLVRE---AIDYFGRM----PDFGLHPNVAV--------------YTALIDGLCKKNCIERARNLFD 139 (257)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~---a~~~~~~~----~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~a~~~~~ 139 (257)
.+|..|+.+|...||+.. +.+.+..+ ...|+...... -...+......|-++.+.+++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999998655 22212111 12222111111 1223444455667777777776
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 041259 140 EMPKRDMIPDTTAYTALIDGYLKH-ESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILP 218 (257)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 218 (257)
.+...... .+.. .+++-+... ..+++...+.+...+ .|+..+|..++.+-...|+.+.|..++.+|.+.|++.
T Consensus 164 ~~Pvsa~~-~p~~--vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 164 KVPVSAWN-APFQ--VFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred hCCccccc-chHH--HHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 66544322 1111 124433332 233444433333333 4788999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCCC
Q 041259 219 DEILCISLLKKHYERGNMDEAIELQNEMMGRGLLSGSKN 257 (257)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 257 (257)
+..-|..|+-+ .++...+..++.-|.+.|+.|++.|
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT 273 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSET 273 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcch
Confidence 88888888766 7888889999999999999999876
No 25
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.66 E-value=3.1e-14 Score=110.38 Aligned_cols=231 Identities=18% Similarity=0.113 Sum_probs=167.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLC 91 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (257)
.|+.|-..+-..|++..|+.-|++..... |.-...|..|...|...+.+++|+..|.+..... +-...++..+...|.
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYY 297 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEe
Confidence 45556666666777777777777776643 2235567777777777777777777777776542 224566677777777
Q ss_pred hcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHH
Q 041259 92 KSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALN 171 (257)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (257)
..|+++.|...+++..+.. +.-...|+.|..++-..|+..+|.+.+.......+. .....+.|...|...|.+++|..
T Consensus 298 eqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred ccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHH
Confidence 7888888888888877653 223567888888888888888888888887776544 56677888888888888888888
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 172 LKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD-EILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
+|....+.... -...++.|...|-++|++++|...+++.++ +.|+ ...|+.+...|...|+.+.|++.+.+.+..
T Consensus 376 ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 376 LYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 88877765322 345678888888888888888888888876 4565 356777888888888888888888776653
No 26
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=8.2e-13 Score=94.77 Aligned_cols=225 Identities=16% Similarity=0.111 Sum_probs=180.9
Q ss_pred cCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcc---cHHHHHHHHHHHHhcCcHHHH
Q 041259 23 ESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEV---TVVTFCVLIDGLCKSGLVREA 99 (257)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a 99 (257)
..+.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|..+.|+++.+.+.++.--+ ...+...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567899999999999853 4455667789999999999999999999998752111 123445577888889999999
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHcccCHHHHHHHHHH
Q 041259 100 IDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPD----TTAYTALIDGYLKHESFKEALNLKNR 175 (257)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (257)
+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+. ...|..+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998865 34566778899999999999999999998887765543 24566777778888999999999999
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 176 MTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 176 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
..+.+.. +...-..+.+.....|+++.|.+.++...+++..--..+...|..+|...|+.++....+..+.+..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8887543 4455556778889999999999999999988655556778889999999999999999999988753
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.66 E-value=1e-12 Score=115.02 Aligned_cols=236 Identities=14% Similarity=0.031 Sum_probs=149.5
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHH------------------------------------
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLM------------------------------------ 52 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~------------------------------------ 52 (257)
+...+..+...+...|++++|++.|+++.+.. +.+...+..+.
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 44456667777777788888888887777653 22233332222
Q ss_pred ------HHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 041259 53 ------DAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLC 126 (257)
Q Consensus 53 ------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (257)
..+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+.
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 22334567777777777776653 2245566667777777777777777777765532 223333333333333
Q ss_pred hcCcHHHHHHHHHHhhhCC---------------------------------------CCCCHHHHHHHHHHHHcccCHH
Q 041259 127 KKNCIERARNLFDEMPKRD---------------------------------------MIPDTTAYTALIDGYLKHESFK 167 (257)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~---------------------------------------~~~~~~~~~~l~~~~~~~~~~~ 167 (257)
..++.++|...++.+.... .+.+...+..+...+...|+++
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 3444444444433322110 1123445566777778888888
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 168 EALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
+|...|+...+..+. +...+..++..+...|++++|.+.++.+.+.. +.+...+..+..++...|++++|.++++++.
T Consensus 621 ~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 621 AARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 888888888876433 67788888888888899999999888777642 2244556667778888899999999998887
Q ss_pred hC
Q 041259 248 GR 249 (257)
Q Consensus 248 ~~ 249 (257)
..
T Consensus 699 ~~ 700 (1157)
T PRK11447 699 PQ 700 (1157)
T ss_pred hh
Confidence 64
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.66 E-value=8.7e-13 Score=111.69 Aligned_cols=233 Identities=10% Similarity=0.028 Sum_probs=184.7
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHH
Q 041259 7 KADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVL 86 (257)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (257)
.|+......+...+...|++++|...|+.+... +|+...+..+..++.+.|++++|...+++..+.. +.....+..+
T Consensus 506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~L 582 (987)
T PRK09782 506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWL 582 (987)
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHH
Confidence 355443333445556899999999999998664 4555667777888899999999999999998864 2233334444
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCH
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESF 166 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (257)
.......|++++|...+++..+. .|+...+..+...+.+.|++++|...+++.....+. +...++.+..++...|++
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCH
Confidence 44555669999999999999876 467889999999999999999999999999988665 778888999999999999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 041259 167 KEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDE-ILCISLLKKHYERGNMDEAIELQNE 245 (257)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (257)
++|...++...+..+. +...+..+..++...|++++|+..+++..+. .|+. .+.........+..+++.|.+-++.
T Consensus 660 eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 660 AQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999987543 7788999999999999999999999999985 3443 4444455566667777777776665
Q ss_pred HHh
Q 041259 246 MMG 248 (257)
Q Consensus 246 m~~ 248 (257)
-..
T Consensus 737 ~~~ 739 (987)
T PRK09782 737 RWT 739 (987)
T ss_pred Hhh
Confidence 544
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.65 E-value=9.9e-13 Score=106.50 Aligned_cols=232 Identities=13% Similarity=0.005 Sum_probs=170.1
Q ss_pred ChhhHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh---------cCChHHHHHHHHHHHhc
Q 041259 9 DLPLYGTIIWGLCI-----ESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFK---------AGEPSEALSLLDEMLDS 74 (257)
Q Consensus 9 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~ 74 (257)
+...|...+.+... .+++++|.+.|++..+.. |-+...|..+..++.. .+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44555566665322 234678999999998864 3345566666655442 24478999999999887
Q ss_pred CCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHH
Q 041259 75 RIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYT 154 (257)
Q Consensus 75 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (257)
. +-+..++..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.++. +...+.
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 4 3367888888888999999999999999998875 455677888889999999999999999999887654 333344
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHhc
Q 041259 155 ALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDE-ILCISLLKKHYER 233 (257)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 233 (257)
.++..+...|++++|...++++.+...+-++..+..+..++...|++++|...+.++... .|+. ...+.+...|...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhcc
Confidence 445556678999999999998876542224556777888888999999999999887654 3443 3444455566666
Q ss_pred CCHHHHHHHHHHHHh
Q 041259 234 GNMDEAIELQNEMMG 248 (257)
Q Consensus 234 g~~~~a~~~~~~m~~ 248 (257)
| ++|...++.+.+
T Consensus 489 g--~~a~~~l~~ll~ 501 (553)
T PRK12370 489 S--ERALPTIREFLE 501 (553)
T ss_pred H--HHHHHHHHHHHH
Confidence 6 477777777665
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.2e-13 Score=107.55 Aligned_cols=234 Identities=11% Similarity=0.024 Sum_probs=169.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcC---------------------------------CCccHHHHHHHHHHHHh
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENG---------------------------------LTANTVICTTLMDAYFK 57 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~~~ 57 (257)
.+...+..+|...+++++|+++|+.+.+.. -+..+.+|.++..+|.-
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 344456677777788888888887766431 01234567777777777
Q ss_pred cCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 041259 58 AGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNL 137 (257)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (257)
+++.+.|++.|++..+.. +-...+|+.+..-+....++|.|...|+...... +-+-.+|-.+...|.+.++++.|.-.
T Consensus 434 Qkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~ 511 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFH 511 (638)
T ss_pred hhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHH
Confidence 778888888888777653 1156777777777777777888888887766432 22334555567788888889999888
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC
Q 041259 138 FDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGIL 217 (257)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (257)
|+...+-++. +.+....+...+.+.|+.++|+++++++...... |+..--.-+..+...+++++|+..++++++. .
T Consensus 512 fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--v 587 (638)
T KOG1126|consen 512 FQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--V 587 (638)
T ss_pred HHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--C
Confidence 8888887665 6677777778888889999999999988877644 5555555566777888999999999998874 4
Q ss_pred Cc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 218 PD-EILCISLLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 218 ~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
|+ ...|..+...|.+.|+.+.|+.-|.-+.+.+
T Consensus 588 P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 588 PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 55 4566677788889999999988887776543
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=2.3e-12 Score=96.03 Aligned_cols=180 Identities=16% Similarity=0.255 Sum_probs=132.0
Q ss_pred CCCCCCCCChhhHHHHHHHHHhcCChhh----HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHH-HHHHHHHHHhc-
Q 041259 1 MKGKNIKADLPLYGTIIWGLCIESKFED----SKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSE-ALSLLDEMLDS- 74 (257)
Q Consensus 1 M~~~g~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~- 74 (257)
|.+..++||..|||+++.+.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++...
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 5677889999999999999999998876 46678888999999999999999999988887644 55555555432
Q ss_pred ---CCc----ccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCC----CCCC---HHHHHHHHHHHHhcCcHHHHHHHHHH
Q 041259 75 ---RIE----VTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFG----LHPN---VAVYTALIDGLCKKNCIERARNLFDE 140 (257)
Q Consensus 75 ---~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (257)
..+ .+...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....+.....+.-...|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 245667778888888888888888766554211 2232 23455666677777777777888888
Q ss_pred hhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcC
Q 041259 141 MPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVG 180 (257)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (257)
|.-.-.-|+..+...++++....|.++-.-++|..++..|
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 8776667777888888888777888777777777766555
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=2.4e-12 Score=100.60 Aligned_cols=228 Identities=16% Similarity=0.072 Sum_probs=143.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGLTANT--VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSG 94 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (257)
.....+.|+++.|.+.+.+..+.. |+. .........+...|+++.|...++.+.+.. +-++.++..+...+.+.|
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHh
Confidence 344455566666666666655432 222 222233555555666666666666665553 224455555666666666
Q ss_pred cHHHHHHHHHhcccCCCC-----------------------------------------CCHHHHHHHHHHHHhcCcHHH
Q 041259 95 LVREAIDYFGRMPDFGLH-----------------------------------------PNVAVYTALIDGLCKKNCIER 133 (257)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~-----------------------------------------~~~~~~~~l~~~~~~~~~~~~ 133 (257)
++++|.+++..+.+.+.. .+...+..+...+...|+.++
T Consensus 202 d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~ 281 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDS 281 (409)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence 666665555555443221 244555556667777888888
Q ss_pred HHHHHHHhhhCCCCCCHHHH-HHHHHHHHcccCHHHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCcHHHHHHHHHH
Q 041259 134 ARNLFDEMPKRDMIPDTTAY-TALIDGYLKHESFKEALNLKNRMTEVGVDLDL--NAYTSLVWGLSRCGHLQEARVLFHE 210 (257)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~ 210 (257)
|.+++++..+..+......+ ..........++.+.+.+.++...+... -|+ ....++...+.+.|++++|.+.|+.
T Consensus 282 A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 282 AQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 88888888776443221111 1111222345677788888877776532 244 6677888999999999999999995
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 211 MIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.......|+...+..+...+.+.|+.++|.+++++-..
T Consensus 361 a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 361 VAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444578888888999999999999999999998654
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=5.9e-12 Score=97.98 Aligned_cols=218 Identities=10% Similarity=0.064 Sum_probs=165.0
Q ss_pred cCChhhHHHHHHHHHHcCCCccHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHH--HHHHHHHhcCcHHHH
Q 041259 23 ESKFEDSKLLLSEMKENGLTANTVI-CTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFC--VLIDGLCKSGLVREA 99 (257)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a 99 (257)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766642 22333 444455558899999999999999875 44543332 346788999999999
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCC-------------------------------
Q 041259 100 IDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIP------------------------------- 148 (257)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------- 148 (257)
...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..+
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998875 5577888899999999999999998888877654331
Q ss_pred ----------CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 041259 149 ----------DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILP 218 (257)
Q Consensus 149 ----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 218 (257)
+......+...+...|+.++|..++++..+. .|+.... ++.+....++.+++.+..+...+. .+-
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~-~P~ 326 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ-HGD 326 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh-CCC
Confidence 2334445566777889999999999888774 3454322 233444568999999999988876 344
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 219 DEILCISLLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
|...+..+...+.+.|++++|.+.|+...+..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 56678889999999999999999999998753
No 34
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=1.3e-11 Score=90.99 Aligned_cols=234 Identities=12% Similarity=0.058 Sum_probs=143.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh
Q 041259 13 YGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCK 92 (257)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (257)
|-.-..+.-+.|+.+.+-..+.++-+..-.++....-+........|+++.|..-+.++.+.+.. .+.......++|.+
T Consensus 121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~ 199 (400)
T COG3071 121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIR 199 (400)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHH
Confidence 33334444455555555555555544322233344444444455555555555555555544322 34444555555555
Q ss_pred cCcHHHHHHHHHhcccCCC-----------------------------------------CCCHHHHHHHHHHHHhcCcH
Q 041259 93 SGLVREAIDYFGRMPDFGL-----------------------------------------HPNVAVYTALIDGLCKKNCI 131 (257)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~-----------------------------------------~~~~~~~~~l~~~~~~~~~~ 131 (257)
.|++..+..++..+.+.+. +.++..-.+++.-+.++|+.
T Consensus 200 ~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~ 279 (400)
T COG3071 200 LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDH 279 (400)
T ss_pred hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCCh
Confidence 5555555555555544433 22333444555566667777
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 041259 132 ERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEM 211 (257)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 211 (257)
++|.++.++..+.+..|.. ...-.+.+.++.+.-.+..+.-.+.. +-++..+.+|...|.+.+.|.+|...|+..
T Consensus 280 ~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaA 354 (400)
T COG3071 280 DEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAA 354 (400)
T ss_pred HHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777777776666655441 11123345556665555555544432 235678899999999999999999999988
Q ss_pred HhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041259 212 IGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGRGLLSG 254 (257)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 254 (257)
.+. .|+..+|..+..++.+.|+..+|.++.++-.-.-.+|+
T Consensus 355 l~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 355 LKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred Hhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 875 78999999999999999999999999998775444444
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=3.7e-13 Score=104.89 Aligned_cols=220 Identities=15% Similarity=0.094 Sum_probs=177.3
Q ss_pred CChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----------------------------
Q 041259 24 SKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSR---------------------------- 75 (257)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------- 75 (257)
-+..+|...|..+... +.-+......+..+|...+++++|.++|+.+.+..
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 4567888899886554 34455677888999999999999999999887542
Q ss_pred -----CcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCH
Q 041259 76 -----IEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDT 150 (257)
Q Consensus 76 -----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (257)
-+-.+.+|.++.++|.-+++.+.|++.|++..... +-...+|+.+..-+.....++.|...|+..+..+.. +-
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hY 489 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HY 489 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hh
Confidence 12256888999999999999999999999988764 236778888888888899999999999988876444 44
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041259 151 TAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKH 230 (257)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (257)
..|.-+.-.|.+.++++.|+-.|+++.+.++. +.+....+...+-+.|+.++|+.+++++...... |+..-..-+..+
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il 567 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASIL 567 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHH
Confidence 55666778899999999999999999987755 6777788888889999999999999999876433 444444467778
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 041259 231 YERGNMDEAIELQNEMMG 248 (257)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~ 248 (257)
...+++++|+..++++.+
T Consensus 568 ~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKE 585 (638)
T ss_pred HhhcchHHHHHHHHHHHH
Confidence 889999999999999875
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.59 E-value=5.3e-12 Score=102.32 Aligned_cols=217 Identities=12% Similarity=-0.011 Sum_probs=160.7
Q ss_pred CChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHH
Q 041259 24 SKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYF 103 (257)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 103 (257)
+++++|...++++.+.+ |.+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45889999999999875 5677888888889999999999999999999875 335678888999999999999999999
Q ss_pred HhcccCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC
Q 041259 104 GRMPDFGLHPN-VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVD 182 (257)
Q Consensus 104 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (257)
++..+.. |+ ...+..++..+...|++++|...+++......+-+...+..+..++...|+.++|...+.++.....
T Consensus 396 ~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~- 472 (553)
T PRK12370 396 NECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI- 472 (553)
T ss_pred HHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-
Confidence 9998764 43 3333444555677899999999999987654322455677788888999999999999998766522
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 183 LDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR-GILPDEILCISLLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 183 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
.+....+.+...+...| ++|...++.+.+. .-.+....+ +-..+.-.|+.+.+..+ +++.+.|
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 23445556666677777 4888878777654 122222223 34445556776666665 7777654
No 37
>PF13041 PPR_2: PPR repeat family
Probab=99.58 E-value=6.9e-15 Score=78.80 Aligned_cols=50 Identities=32% Similarity=0.595 Sum_probs=40.4
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 041259 8 ADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFK 57 (257)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 57 (257)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 77888888888888888888888888888888888888888888887764
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.58 E-value=1.6e-11 Score=103.18 Aligned_cols=236 Identities=13% Similarity=0.096 Sum_probs=159.5
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
+...+..+...+...|++++|.+++++..+.. |.+...+..+..++...|++++|+..++++.+.. +.+.. +..+..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~ 124 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAY 124 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHH
Confidence 34457778888888899999999888887763 4556677788888888889999999888888763 33555 777888
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH-----------------------------
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFD----------------------------- 139 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------------------------- 139 (257)
++...|+.++|+..++++.+.. +.+...+..+...+...+..+.|+..++
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 8888888999998888887764 3344555555666655555554444443
Q ss_pred -----------------HhhhC-CCCCCHH-HHH----HHHHHHHcccCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHH
Q 041259 140 -----------------EMPKR-DMIPDTT-AYT----ALIDGYLKHESFKEALNLKNRMTEVGVD-LDLNAYTSLVWGL 195 (257)
Q Consensus 140 -----------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 195 (257)
.+.+. ...|+.. .+. ..+.++...|++++|...|+.+.+.+.. |+. ....+...+
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 33321 1112111 111 1122345668888999999988877532 322 223356788
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 196 SRCGHLQEARVLFHEMIGRGILP---DEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
...|++++|+..++++....... .......+..++.+.|++++|.++++.+.+.
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 88999999999999887642111 1344566777788899999999999888765
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.2e-11 Score=91.54 Aligned_cols=239 Identities=14% Similarity=0.127 Sum_probs=165.8
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CccHHHHHHHHH-----------------------------
Q 041259 5 NIKADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGL--TANTVICTTLMD----------------------------- 53 (257)
Q Consensus 5 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~----------------------------- 53 (257)
|+..+...-+....+.-...++++|+.+|+++.+... --|..+|..++.
T Consensus 257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI 336 (559)
T KOG1155|consen 257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII 336 (559)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee
Confidence 3333333334444445567889999999999887631 013445543332
Q ss_pred --HHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcH
Q 041259 54 --AYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCI 131 (257)
Q Consensus 54 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (257)
.|+-.++.++|...|++.++.+.. ...+|+.+..-|....+...|.+-++...+.. +.|-..|-.|..+|.-.+.+
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMH 414 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcch
Confidence 244456678888888888876533 56778888888888888888888888887765 56777888888888888888
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 041259 132 ERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEM 211 (257)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 211 (257)
.-|+-.|++..+..+. |...|.+|..+|.+.++.++|...|......|-. +...+..+.+.+-+.++.++|...+++.
T Consensus 415 ~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 415 FYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8888888887776444 7888888888888888888888888888776633 5577888888888888888888888766
Q ss_pred HhC----CC-CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 212 IGR----GI-LP-DEILCISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 212 ~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
++. |. .| .......|..-+.+.+++++|..+.....
T Consensus 493 v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 493 VEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 652 32 22 22233335566667777777776555443
No 40
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=1.2e-12 Score=94.27 Aligned_cols=229 Identities=13% Similarity=0.045 Sum_probs=189.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc
Q 041259 14 GTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKS 93 (257)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (257)
+-+.++|.+.|-+.+|.+.|+..... .|-+.||..|-..|.+.++++.|+.++.+-++. .+-++.......+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34678889999999999999988876 477788999999999999999999999998876 233444445677888889
Q ss_pred CcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHH
Q 041259 94 GLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLK 173 (257)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (257)
++.++|.++++...+.. +.++.....+...|.-.++++-|+.+++++.+.|+. +...|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999987764 556777777888888999999999999999999987 8889999999999999999999998
Q ss_pred HHHHHcCCCcc--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 174 NRMTEVGVDLD--LNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 174 ~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
++....--.|+ ...|-.+-......|++..|.+.|+-.+..+ .-....++.|...-.+.|++++|..+++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 88776543333 4567778888888999999999999888763 23567888888888999999999999987654
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=6e-12 Score=94.53 Aligned_cols=227 Identities=15% Similarity=0.099 Sum_probs=184.8
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCc--ccHHHHHH----------
Q 041259 18 WGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIE--VTVVTFCV---------- 85 (257)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~---------- 85 (257)
.++-.....+++..=.+.+...|++-+...-+....+.....++++|+.+|+++.+..+- -|..+|..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344455677788888888888888777766666677777888999999999999876310 13344433
Q ss_pred ---------------------HHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhC
Q 041259 86 ---------------------LIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKR 144 (257)
Q Consensus 86 ---------------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (257)
+.+-|.-.++.+.|...|++..+.+ +.....|+.+..-|....+...|.+-++...+-
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 3333444577899999999998875 456678888999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHH
Q 041259 145 DMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCI 224 (257)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (257)
++. |-..|-.+.++|...+.+.-|+-.|++..+..+ -|...|.+|..+|.+.++.++|++.|.+....|-. +...+.
T Consensus 394 ~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~ 470 (559)
T KOG1155|consen 394 NPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALV 470 (559)
T ss_pred Cch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHH
Confidence 765 889999999999999999999999999988753 48899999999999999999999999999987532 557888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 225 SLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 225 ~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.|.+.|-+.++.++|.+.+.+.++
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999988765
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=2.3e-11 Score=95.16 Aligned_cols=230 Identities=11% Similarity=0.063 Sum_probs=163.0
Q ss_pred HhcCChhhHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHH
Q 041259 21 CIESKFEDSKLLLSEMKENGLTAN-TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREA 99 (257)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (257)
...|+++.|.+.+....+.. |+ ...+-....+....|+++.|.+.+++..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35899999999999887753 44 3444555677888999999999999987653222223444468888999999999
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC--------------------------------
Q 041259 100 IDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMI-------------------------------- 147 (257)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------------------- 147 (257)
...++.+.+.. +-+......+...+...|++++|.+.+..+.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998875 456778889999999999999999888887755332
Q ss_pred ----C-----CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHH-HHHHHHHHHhcCcHHHHHHHHHHHHhCCCC
Q 041259 148 ----P-----DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNA-YTSLVWGLSRCGHLQEARVLFHEMIGRGIL 217 (257)
Q Consensus 148 ----~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (257)
| +...+..+...+...|+.++|.+++++..+......... ...........++.+.+.+.++...+. .+
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VD 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CC
Confidence 2 344455555667777888888888888877543211111 111112223456778888888777765 22
Q ss_pred CcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041259 218 PDE--ILCISLLKKHYERGNMDEAIELQNEMMGRGLLSG 254 (257)
Q Consensus 218 ~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 254 (257)
-++ ....++...+.+.|++++|.+.|+........|+
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 234 5566788899999999999999995444333444
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=3.7e-11 Score=86.46 Aligned_cols=197 Identities=16% Similarity=0.133 Sum_probs=144.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccH------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTANT------VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCV 85 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (257)
+--+|-+.|.+.|..++|+++.+.+.++ ||. .....|..-|...|-+|.|+.+|..+.+.+ .--..+...
T Consensus 71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~Alqq 146 (389)
T COG2956 71 AHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQ 146 (389)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHH
Confidence 3445778888999999999999998875 332 234566677888899999999999998754 335567788
Q ss_pred HHHHHHhcCcHHHHHHHHHhcccCCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 041259 86 LIDGLCKSGLVREAIDYFGRMPDFGLHPNV----AVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYL 161 (257)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (257)
|+..|-...+|++|.++-+++.+.+-.+.. ..|.-+...+....+.+.|..++.+..+.+.+ ++..-..+.+.+.
T Consensus 147 Ll~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~ 225 (389)
T COG2956 147 LLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVEL 225 (389)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHH
Confidence 999999999999999998888766533321 24445555556667788888888887776554 4555556667777
Q ss_pred cccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 162 KHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
..|+++.|.+.++...+.++.--..+...|..+|...|+.++....+.++.+
T Consensus 226 ~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 226 AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888888888888887776655566777777888888887777777666655
No 44
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.54 E-value=7.2e-11 Score=98.45 Aligned_cols=90 Identities=11% Similarity=0.005 Sum_probs=70.8
Q ss_pred HHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC-----CCCcHHHHHHHHHHHHhc
Q 041259 159 GYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRG-----ILPDEILCISLLKKHYER 233 (257)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 233 (257)
++...++..++.+.++.+...+.+....+-..+..+|...+++++|+.++..+.... ..++......|..++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 445567788888888888877766556688888999999999999999999887642 122344457788899999
Q ss_pred CCHHHHHHHHHHHHh
Q 041259 234 GNMDEAIELQNEMMG 248 (257)
Q Consensus 234 g~~~~a~~~~~~m~~ 248 (257)
+++++|..+++++.+
T Consensus 381 e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 381 EQLDKAYQFAVNYSE 395 (822)
T ss_pred ccHHHHHHHHHHHHh
Confidence 999999999999987
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.53 E-value=8.3e-11 Score=98.97 Aligned_cols=236 Identities=10% Similarity=-0.015 Sum_probs=174.6
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
+.....-.+......|+.++|++++....... +.+...+..+..++...|++++|..+|++.++.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34444556777888999999999999998632 5667779999999999999999999999998763 335677788889
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKE 168 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (257)
++...|++++|...++++.+.. +.+.. +..+..++...|+.++|...++++.+..+. +...+..+..++...+..+.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999998763 45566 888889999999999999999999987655 55666666666666666555
Q ss_pred HHHHHH----------------------------------------------HHHHc-CCCccHH-HH----HHHHHHHH
Q 041259 169 ALNLKN----------------------------------------------RMTEV-GVDLDLN-AY----TSLVWGLS 196 (257)
Q Consensus 169 a~~~~~----------------------------------------------~~~~~-~~~~~~~-~~----~~li~~~~ 196 (257)
|...++ .+.+. ...|+.. .+ ...+..+.
T Consensus 169 Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 169 ALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 444333 33322 1112111 11 11133456
Q ss_pred hcCcHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 197 RCGHLQEARVLFHEMIGRGIL-PDEILCISLLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
..|++++|+..|+.+.+.+.. |+. ....+..++...|++++|+..|+++.+..
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 778999999999999887532 332 22225778999999999999999987643
No 46
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.53 E-value=2.8e-11 Score=94.76 Aligned_cols=239 Identities=23% Similarity=0.227 Sum_probs=177.0
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHc-----C-CCccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc-----C--
Q 041259 10 LPLYGTIIWGLCIESKFEDSKLLLSEMKEN-----G-LTANTV-ICTTLMDAYFKAGEPSEALSLLDEMLDS-----R-- 75 (257)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-- 75 (257)
..+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666899999999999999999988765 2 123333 3345777889999999999999988642 2
Q ss_pred CcccHHHHHHHHHHHHhcCcHHHHHHHHHhccc-----CCC-CCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhhhC----
Q 041259 76 IEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPD-----FGL-HPNV-AVYTALIDGLCKKNCIERARNLFDEMPKR---- 144 (257)
Q Consensus 76 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 144 (257)
.+--..+++.|..+|.+.|++++|...+++..+ .+. .|.+ ..++.+...+...+++++|..+++...+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 122346778888899999999998888776632 111 2222 24556777888999999999998875432
Q ss_pred -CCC--CCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcC-------CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-
Q 041259 145 -DMI--PDTTAYTALIDGYLKHESFKEALNLKNRMTEVG-------VDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIG- 213 (257)
Q Consensus 145 -~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 213 (257)
|.. --..+++.|...|...|++++|.+++++..... ..-....++.+...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 124678999999999999999999999886531 111245678888999999999999999887653
Q ss_pred ---CCC-CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 214 ---RGI-LP-DEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 214 ---~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.|. .| ...+|..|...|...|++++|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 232 22 346789999999999999999999988763
No 47
>PF13041 PPR_2: PPR repeat family
Probab=99.52 E-value=5.6e-14 Score=75.26 Aligned_cols=47 Identities=40% Similarity=0.654 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 041259 149 DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGL 195 (257)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 195 (257)
|..+|+.+|.+|++.|++++|.++|++|.+.|++||..||+.++++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444333
No 48
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.48 E-value=2.3e-10 Score=78.73 Aligned_cols=193 Identities=16% Similarity=0.047 Sum_probs=94.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc
Q 041259 16 IIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGL 95 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (257)
|.-.|.+.|+...|..-+++..+.. |.+..+|..+...|-+.|+.+.|.+.|++..+.. +-+-.+.|.....+|..|.
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 4444555555555555555555543 3334455555555555555555555555555442 1134445555555555555
Q ss_pred HHHHHHHHHhcccCCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHH
Q 041259 96 VREAIDYFGRMPDFGL-HPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKN 174 (257)
Q Consensus 96 ~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (257)
+++|...|++....-. .....+|..+.-+..+.|+.+.|...|++..+.+.. ...+...+.+.....|++-.|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 5555555555443211 111234445555555555555555555555544333 33344445555555555555555555
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 041259 175 RMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMI 212 (257)
Q Consensus 175 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 212 (257)
.....+. ++....-..|+.--..|+-+.+.+.=..+.
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5544433 455555555555555555555544444433
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=8.3e-11 Score=88.74 Aligned_cols=207 Identities=12% Similarity=0.084 Sum_probs=167.9
Q ss_pred hcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHH
Q 041259 22 IESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAID 101 (257)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (257)
..|++++|.+.+++.......-....|+.-+ .+-..|++++|++.|-++... +.-+..+...+.+.|....+..+|.+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 3689999999999998765444444455433 467789999999999888654 23367777888899999999999999
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCC
Q 041259 102 YFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGV 181 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (257)
++.+.... ++.|+...+.|...|-+.|+-.+|.+.+-+-... ++-+..+..+|...|....-++++..+|++..- +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 99888654 5678889999999999999999999987776555 334888999999999999999999999998765 6
Q ss_pred CccHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 041259 182 DLDLNAYTSLVWGL-SRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGN 235 (257)
Q Consensus 182 ~~~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (257)
.|+..-|..++..| .+.|++.+|.++++...++ ++-+......|++.+...|-
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 78999998887554 5789999999999998876 67788888888888877664
No 50
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.46 E-value=4.3e-10 Score=91.03 Aligned_cols=132 Identities=17% Similarity=0.107 Sum_probs=76.2
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHH
Q 041259 7 KADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVL 86 (257)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (257)
.|.+...-.....+...|++++|.+++.+.++.. +.....|..|...|-..|+.+++...+-..-... +-|...|..+
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~l 213 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRL 213 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 3333433344444455588888888888888764 5667778888888888887777777665554442 2255666666
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEM 141 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 141 (257)
.....+.|.+++|.-.|.+.++.. +++...+-.-...|-+.|+...|...|.++
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQL 267 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 666666666666666666655543 233222222333344444444444443333
No 51
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.45 E-value=1e-09 Score=91.72 Aligned_cols=229 Identities=11% Similarity=0.062 Sum_probs=150.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcH
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLV 96 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (257)
...+...|++++|.++|+++.+.. |-+...+..++..+...++.++|++.++++... .|+...+..++..+...++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 446667788888888888887764 445566666777777778888888887777665 34444443343444334444
Q ss_pred HHHHHHHHhcccCCCCCCHHHHH---------------------------------------------------------
Q 041259 97 REAIDYFGRMPDFGLHPNVAVYT--------------------------------------------------------- 119 (257)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 119 (257)
.+|++.++++.+.. +.+...+.
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 44666666664432 11111110
Q ss_pred --------------------------------HHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHH
Q 041259 120 --------------------------------ALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFK 167 (257)
Q Consensus 120 --------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (257)
-.+-++...+++.++++.++.+...+.+....+-.++..+|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 122344455677777777777776665444557778888999999999
Q ss_pred HHHHHHHHHHHcC-----CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC-----------CCc--H-HHHHHHHH
Q 041259 168 EALNLKNRMTEVG-----VDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGI-----------LPD--E-ILCISLLK 228 (257)
Q Consensus 168 ~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~--~-~~~~~l~~ 228 (257)
+|..+++.+.... ..++......|..++...+++++|..+++.+.+... .|+ - ..+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 9999999886643 122344457788889999999999999998887311 122 1 23444667
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 041259 229 KHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 229 ~~~~~g~~~~a~~~~~~m~~~ 249 (257)
.+...|+..+|++.++++...
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 778889999999999988653
No 52
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.44 E-value=5.2e-10 Score=83.66 Aligned_cols=218 Identities=16% Similarity=0.028 Sum_probs=106.1
Q ss_pred CChhhHHHHHHHHHHcC-CCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHH
Q 041259 24 SKFEDSKLLLSEMKENG-LTAN--TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAI 100 (257)
Q Consensus 24 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 100 (257)
+..+.++.-+.++.... ..|+ ...|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44555555555555431 1111 2345555555666666666666666666543 224556666666666666666666
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcC
Q 041259 101 DYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVG 180 (257)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (257)
..|++..+.. +.+..++..+...+...|++++|.+.|+...+.++. +. ........+...++.++|...+.......
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 6666665542 223445555555666666666666666666554332 21 11111122234455666666665443321
Q ss_pred CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC---CC--CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 181 VDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR---GI--LP-DEILCISLLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 181 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
.|+...+ .+. ....|+...+ ..+..+.+. .. .| ....|..+...+.+.|++++|...|++..+.+
T Consensus 196 -~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1121111 111 1223333332 233333321 00 01 12355556666666666666666666665443
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1.4e-11 Score=88.96 Aligned_cols=196 Identities=15% Similarity=0.097 Sum_probs=167.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 041259 49 TTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKK 128 (257)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (257)
+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|-+.|.+..++..|+.++.+-.+.- +.++.......+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 67889999999999999999999887 5677889999999999999999999999987752 33444445677888899
Q ss_pred CcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHH
Q 041259 129 NCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLF 208 (257)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 208 (257)
++.++|.++++...+.... ++.....+...|.-.++++-|+.+++++.+.|+. ++..|..+.-+|...++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999999887654 7777788888899999999999999999999987 8999999999999999999999999
Q ss_pred HHHHhCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 209 HEMIGRGILPD--EILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 209 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
.+.+..--.|+ ...|..+-...+..||+..|.+.|+-.+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 99987644444 346777887788889999988888876544
No 54
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=8.1e-10 Score=76.08 Aligned_cols=198 Identities=17% Similarity=0.102 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 041259 46 VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGL 125 (257)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (257)
.+...|.-.|...|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 356677788999999999999999999874 3367889999999999999999999999998765 45677889999999
Q ss_pred HhcCcHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHH
Q 041259 126 CKKNCIERARNLFDEMPKRDM-IPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEA 204 (257)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 204 (257)
|..|++++|...|+....... .-...+|..+.-+..+.|+.+.|...|++..+.... .+.+...+.......|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 999999999999999876522 223578889998999999999999999999987544 456777888889999999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 205 RVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
..+++.....+. ++..+....|+.-...|+.+.+-++=.++.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999887754 788888888888889999988777655554
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.3e-10 Score=86.84 Aligned_cols=223 Identities=16% Similarity=0.097 Sum_probs=175.2
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHH
Q 041259 19 GLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVRE 98 (257)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (257)
.+.-.|+...|.+-|+..+.... .+...|.-+..+|....+.++....|++..+.... ++.+|..-.+.+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 34457899999999999998753 33333777888899999999999999999887533 77788888888888899999
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 041259 99 AIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
|..=|++.++.. +.+...|--+.-+..+.+.++++...|++..++-+. .+..|+.....+...+++++|.+.|+...+
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999998764 445666767777777899999999999999887443 788999999999999999999999998876
Q ss_pred cCCC-------ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 179 VGVD-------LDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 179 ~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
.... +.+.+...++.. --.+++..|..++++..+.. +-....|..|.+.-.+.|+.++|+++|++-.
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4322 112222222222 23489999999999998863 2246678899999999999999999998754
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=7.4e-10 Score=82.86 Aligned_cols=204 Identities=13% Similarity=-0.028 Sum_probs=146.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGL 90 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (257)
..|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|...|++..+... -+..+|..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 457777778889999999999999999875 56788999999999999999999999999998642 2567888899999
Q ss_pred HhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHH
Q 041259 91 CKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEAL 170 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (257)
...|++++|.+.|+...+.. |+..........+...++.++|...|+...... .|+...+ .+.. ...|+...+
T Consensus 143 ~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHH--HHccCCCHH-
Confidence 99999999999999988763 443322222333456788999999997755432 2232222 2222 234444433
Q ss_pred HHHHHHHHc---CCC---ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHH
Q 041259 171 NLKNRMTEV---GVD---LDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCI 224 (257)
Q Consensus 171 ~~~~~~~~~---~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (257)
+.+..+.+. .+. ....+|..+...+...|++++|...|++..+.+ +|+..-+.
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~ 274 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHR 274 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence 244444321 111 134678999999999999999999999999864 33544443
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=2.5e-10 Score=86.26 Aligned_cols=224 Identities=16% Similarity=0.153 Sum_probs=163.3
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCccHHHHHHH--HHH----------------------------------HHhcCChH
Q 041259 19 GLCIESKFEDSKLLLSEMKENGLTANTVICTTL--MDA----------------------------------YFKAGEPS 62 (257)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~----------------------------------~~~~~~~~ 62 (257)
.+.+.|+++.|.++++.+.+..-+.-...-+.| +.. ....|+++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 467889999999999887664322111111111 110 11246778
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 041259 63 EALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMP 142 (257)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (257)
+|.+.|++.+.....-....| .+.-.+...|++++|++.|-.+... +..+..+...+...|-...+..+|++++-+..
T Consensus 508 ka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 888888888765333222223 3334456678889998888776432 13466677778888888899999999888776
Q ss_pred hCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHH
Q 041259 143 KRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEIL 222 (257)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (257)
.. ++.|+..++.|...|-+.|+-.+|++.+-.--.. ++.+..+..+|...|....-+++++.+|++..- +.|+..-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 54 3447889999999999999999999877665444 556889999999999999999999999998765 5899999
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 041259 223 CISLLKKHY-ERGNMDEAIELQNEMMG 248 (257)
Q Consensus 223 ~~~l~~~~~-~~g~~~~a~~~~~~m~~ 248 (257)
|..++-.|. +.|++.+|.+++++..+
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 998886554 78999999999998764
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=2.6e-09 Score=79.19 Aligned_cols=221 Identities=13% Similarity=0.093 Sum_probs=162.4
Q ss_pred cCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHH
Q 041259 23 ESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDY 102 (257)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (257)
.|+|.+|+++..+-.+.+ +.....|..-+++.-..|+.+.+-.++.+..+....++....-+........|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 799999999999988876 3445667777888889999999999999998874566777788888999999999999999
Q ss_pred HHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCH-------HHHH---------------------
Q 041259 103 FGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDT-------TAYT--------------------- 154 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~--------------------- 154 (257)
..++.+.+ +.+.........+|.+.|++.....++..+.+.+.-.+. .+|.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99998776 566778888999999999999999999999877654222 2233
Q ss_pred -------------HHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHH
Q 041259 155 -------------ALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEI 221 (257)
Q Consensus 155 -------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (257)
.++.-+.+.|+.++|.++..+..+.+..|+ . ...-.+.+.++.+.-++..++..+. ++.++.
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 344445555666666665555555544333 1 1112334455555555555554443 233557
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 222 LCISLLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
.+.+|...|.+.+.|.+|.+.|+..++.+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 78889999999999999999999776654
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=8.5e-09 Score=81.86 Aligned_cols=127 Identities=14% Similarity=0.071 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 041259 119 TALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRC 198 (257)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 198 (257)
.-+...|...|++++|+.+++..+...+. .+..|..-.+.+-+.|++.+|.+.++........ |...-+-.+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHC
Confidence 33444555566666666666665555332 3455555566666666666666666666655433 455555555666666
Q ss_pred CcHHHHHHHHHHHHhCCCCCcHH------H--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 199 GHLQEARVLFHEMIGRGILPDEI------L--CISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~------~--~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
|++++|.+++....+.+..|-.. . ......+|.+.|++..|++.|..+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666555544322211 1 1234445556666666666555443
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=1.2e-08 Score=80.95 Aligned_cols=228 Identities=15% Similarity=0.158 Sum_probs=156.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHH-HHHHHHHHHh--
Q 041259 16 IIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVT-FCVLIDGLCK-- 92 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~-- 92 (257)
-...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |+... |..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 345567889999999999776554 44445566777888999999999999999999874 34444 4445454421
Q ss_pred ---cCcHHHHHHHHHhcccC----------------------------------CCCCCHHHHHHHHHHHHhcCcHHHHH
Q 041259 93 ---SGLVREAIDYFGRMPDF----------------------------------GLHPNVAVYTALIDGLCKKNCIERAR 135 (257)
Q Consensus 93 ---~~~~~~a~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (257)
..+.+....+++++... |+ +.+|+.|-..|.......-..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv---PslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV---PSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHcChhHHHHHH
Confidence 12455566666665322 21 123333444444333333334
Q ss_pred HHHHHhhhC----C----------CCCCH--HHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 041259 136 NLFDEMPKR----D----------MIPDT--TAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCG 199 (257)
Q Consensus 136 ~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 199 (257)
+++...... + -.|+. .++..+.+.|-..|++++|++++++.++..+. .+..|..-.+.+-..|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCC
Confidence 444443211 1 12344 34566778888999999999999999987532 4788888999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041259 200 HLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGRGL 251 (257)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 251 (257)
++.+|.+.++........ |...-+..+..+.++|++++|.+++....+.+.
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999999987432 666667788888999999999999998877765
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.4e-09 Score=81.30 Aligned_cols=226 Identities=15% Similarity=0.034 Sum_probs=130.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcH
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLV 96 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (257)
|.++...|+..+-..+=..+.+. .|..+.+|-++...|...|+..+|.+.|.+....... -...|-.+...|.-.+..
T Consensus 285 ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 285 IACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred HHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchH
Confidence 33344444443333333333333 2333444555554455555555555555555433211 224455555555555555
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHH
Q 041259 97 REAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRM 176 (257)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (257)
++|...+....+.= +-....+--+..-|.+.++.+.|.++|.+.....+. |+..++.+.-.....+.+.+|..+|+..
T Consensus 363 dQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 363 DQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred HHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHH
Confidence 55555544432210 111111122334456667777777777776665433 6667777766667778888888888776
Q ss_pred HHc----CC-C-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 177 TEV----GV-D-LDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 177 ~~~----~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
... +. . .-..+++.|..+|.+.+.+++|+..+++.+.. .+-+..++.++.-.|...|+++.|.+.|.+.+
T Consensus 441 l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 441 LEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 521 00 0 12345777888888888888888888888775 24477788888888888888888888888765
No 62
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.26 E-value=1.7e-09 Score=80.00 Aligned_cols=222 Identities=15% Similarity=0.170 Sum_probs=150.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcc-cHHHHHHHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEV-TVVTFCVLIDGL 90 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~ 90 (257)
....+.+++...|+++.++ .++.... +|.......+...+...++-+.++.-+++.......+ +..........+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3445667777778766433 4444433 6677766666655544455566666665554443332 333333344666
Q ss_pred HhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc----ccCH
Q 041259 91 CKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLK----HESF 166 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 166 (257)
...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ +..+...++.++.. .+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhH
Confidence 7789999998888653 456677778899999999999999999998764 33445555555433 3468
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 041259 167 KEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNM-DEAIELQNE 245 (257)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 245 (257)
.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..... +-++.+...++.+....|+. +.+.+++.+
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 9999999998765 56788999999999999999999999999988654 33567777788888888887 667778887
Q ss_pred HHh
Q 041259 246 MMG 248 (257)
Q Consensus 246 m~~ 248 (257)
+.+
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 765
No 63
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.26 E-value=1.3e-08 Score=83.46 Aligned_cols=238 Identities=15% Similarity=0.127 Sum_probs=171.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGL--TANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVL 86 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (257)
|++..+.|...|.-.|++..++.+...+..... ..-...|-.+.++|-..|++++|...|.+..+....-....+..+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 667788888999999999999999988877531 123445788899999999999999999888765322123445567
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC----cHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKN----CIERARNLFDEMPKRDMIPDTTAYTALIDGYLK 162 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (257)
.+.+...|+++.+...|+...... +.+..+...|...|...+ ..+.|..++....+..+. |...|..+...+..
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQ 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHh
Confidence 899999999999999999887653 445566666666666654 557777777777776544 77888888877766
Q ss_pred ccCHHHHHHHHHHHH----HcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC---CCCCcH------HHHHHHHHH
Q 041259 163 HESFKEALNLKNRMT----EVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR---GILPDE------ILCISLLKK 229 (257)
Q Consensus 163 ~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~ 229 (257)
..-+.. +..|..+. ..+..+.+...|.+.......|++++|...|...... ...++. .+-..+...
T Consensus 427 ~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 555444 66665443 4455577888999999999999999999999888765 122333 122336666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 041259 230 HYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~~~ 249 (257)
.-..++.+.|.+.|..+.+.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHH
Confidence 66777888888888877653
No 64
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.26 E-value=1.5e-08 Score=79.97 Aligned_cols=234 Identities=13% Similarity=0.065 Sum_probs=150.2
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
+...|-..+........+++|..+|.+.... .|+...|.--+..---.++.++|++++++.++. ++.-...|-.+.+
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQ 693 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence 3344555555555556666666666655543 355555555555555556666666666666554 2333445556666
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKE 168 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (257)
.+-+.++.+.|...|..-.+. ++.....|-.|...--+.|.+-.|..+++....+++. +...|...|+.-.+.|+.+.
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHH
Confidence 666666666666666554443 2444556666666667777888888888888877766 77888888888888888888
Q ss_pred HHHHHHHHHHcC-----------------------------CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc
Q 041259 169 ALNLKNRMTEVG-----------------------------VDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD 219 (257)
Q Consensus 169 a~~~~~~~~~~~-----------------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (257)
|..+..+..+.- ..-|+.....+...|-...++++|.+.|.+.++.+ +-.
T Consensus 772 a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~ 850 (913)
T KOG0495|consen 772 AELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDN 850 (913)
T ss_pred HHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Ccc
Confidence 887776654321 12244455566666667777888888888877753 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 220 EILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
-.+|..+...+.++|.-++-.++++....
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 45666677777788877777777776654
No 65
>PLN02789 farnesyltranstransferase
Probab=99.25 E-value=6.1e-08 Score=72.80 Aligned_cols=230 Identities=9% Similarity=-0.025 Sum_probs=170.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAG-EPSEALSLLDEMLDSRIEVTVVTFCVLIDGL 90 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (257)
+++.+-..+...+..++|+.+...+++.. +-+..+|+.--.++...| ++++++..++++.+...+ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 45566666777889999999999999864 345556776666666777 579999999999887543 556777666556
Q ss_pred HhcCcH--HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc---cC
Q 041259 91 CKSGLV--REAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKH---ES 165 (257)
Q Consensus 91 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 165 (257)
.+.|+. ++++.+++.+.+.. +-+..+|+...-.+...|+++++++.++++.+.++. +...|+....++.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 666653 67788888887765 567888988888888999999999999999998876 777777766655443 22
Q ss_pred ----HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC---
Q 041259 166 ----FKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRC----GHLQEARVLFHEMIGRGILPDEILCISLLKKHYERG--- 234 (257)
Q Consensus 166 ----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 234 (257)
.++......+++...+. |...|+.+...+... +...+|.+.+.+....+ ..+......|+..|+...
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~ 272 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPT 272 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccc
Confidence 24667777777776543 778888888888773 34567888888877653 346677888888887632
Q ss_pred ---------------CHHHHHHHHHHHH
Q 041259 235 ---------------NMDEAIELQNEMM 247 (257)
Q Consensus 235 ---------------~~~~a~~~~~~m~ 247 (257)
..++|.++++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 273 AEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhhhhhhccccccccHHHHHHHHHHHH
Confidence 3467888888874
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=9.4e-09 Score=79.54 Aligned_cols=220 Identities=15% Similarity=0.105 Sum_probs=173.7
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHH
Q 041259 7 KADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVL 86 (257)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (257)
+-...+|-++.-.|.--|+..+|++.|......+ +.=...|-...+.|+-.+..++|+..+...-+. .+-...-+--+
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYl 386 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYL 386 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHH
Confidence 3456788888888888899999999999887653 233567999999999999999999999877653 11121222334
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhC----C--CCCCHHHHHHHHHHH
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKR----D--MIPDTTAYTALIDGY 160 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~ 160 (257)
.--|.+.+..+.|.+.|.+..... +.|+...+-+.-.....+.+.+|..+|+..... + ......+++.|..+|
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 556778899999999999987654 567778888877778889999999999886521 1 112456789999999
Q ss_pred HcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 041259 161 LKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYE 232 (257)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (257)
.+.+.+++|+..+++......+ +..++.++.-.+...|+++.|.+.|.+.+. +.|+..+...++..+..
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 9999999999999999887544 899999999999999999999999998886 47888777777765543
No 67
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=6.4e-09 Score=79.22 Aligned_cols=197 Identities=16% Similarity=0.124 Sum_probs=160.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh
Q 041259 13 YGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCK 92 (257)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (257)
|-.+...|....+.++....|....+.+ +-++.+|..-.....-.+++++|..=|++..... +-+...|-.+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHH
Confidence 7778888999999999999999999876 5677788888888888899999999999999874 2366777777778888
Q ss_pred cCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC-----CCHH--HHHHHHHHHHcccC
Q 041259 93 SGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMI-----PDTT--AYTALIDGYLKHES 165 (257)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~--~~~~l~~~~~~~~~ 165 (257)
.+.+++++..|++.++. ++..+..|+.....+...++++.|.+.|+........ .+.. +.-.++. +.-.++
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhh
Confidence 99999999999999875 4667789999999999999999999999987654322 1111 1122221 123489
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 166 FKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
+..|..++++..+..++ ....|..|...-.+.|+.++|+++|++....
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999998755 6788999999999999999999999987753
No 68
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.24 E-value=6.5e-08 Score=76.54 Aligned_cols=220 Identities=15% Similarity=0.100 Sum_probs=136.6
Q ss_pred hcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHH
Q 041259 22 IESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAID 101 (257)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (257)
..|..+....+|+++... .+-....|-.....+-..|+...|..++.+..+.. +-+...|-..+..-..+..++.|..
T Consensus 562 ~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred hcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHH
Confidence 344444444444444443 23333334444444445566666666666655543 2255566666666666666666666
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCC
Q 041259 102 YFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGV 181 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (257)
+|.+.... .|+...|..-+..-.-.++.++|.+++++..+.-.. -...|..+.+.+-+.++.+.|.+.|..-.+. +
T Consensus 640 llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-c 715 (913)
T KOG0495|consen 640 LLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-C 715 (913)
T ss_pred HHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-C
Confidence 66666543 356666655555555566666777776666654211 2345555666666667777776666654443 3
Q ss_pred CccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 182 DLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 182 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
+-.+..|..+.+.=-+.|.+-+|..++++..-++ +-+...|...|+.-.+.|+.+.|..+..+.++
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3355667777777777888889999998887664 34677888899999999999999888877665
No 69
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.21 E-value=5.1e-09 Score=85.70 Aligned_cols=230 Identities=15% Similarity=0.062 Sum_probs=178.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC
Q 041259 15 TIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSG 94 (257)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (257)
.+...+-..++++.|.+.|..+.+.. |-=...|..++......+...+|..+++...... ..++..+..+...+....
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhh
Confidence 36666677889999999999998863 2234455555544455678899999999998753 447777888888999988
Q ss_pred cHHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHh------------cCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 041259 95 LVREAIDYFGRMPDFG-LHPNVAVYTALIDGLCK------------KNCIERARNLFDEMPKRDMIPDTTAYTALIDGYL 161 (257)
Q Consensus 95 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (257)
++..|.+-|....+.- ..+|..+.-+|.+.|.. .+..++|+++|...++.++. |...-+-+.-+++
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA 657 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLA 657 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhh
Confidence 8888888666554321 13566666666665543 34567899999999888766 7778888888899
Q ss_pred cccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCCHHHHH
Q 041259 162 KHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR-GILPDEILCISLLKKHYERGNMDEAI 240 (257)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 240 (257)
..|++..|..+|.+..+.... ...+|..+..+|...|++..|+++|+...+. .-..+......|.+++.+.|.+.+|.
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred hccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999999987542 5578899999999999999999999988765 44557788899999999999999999
Q ss_pred HHHHHHHh
Q 041259 241 ELQNEMMG 248 (257)
Q Consensus 241 ~~~~~m~~ 248 (257)
+.+.....
T Consensus 737 ~~ll~a~~ 744 (1018)
T KOG2002|consen 737 EALLKARH 744 (1018)
T ss_pred HHHHHHHH
Confidence 98876654
No 70
>PF12854 PPR_1: PPR repeat
Probab=99.19 E-value=2.8e-11 Score=58.45 Aligned_cols=34 Identities=29% Similarity=0.554 Sum_probs=27.7
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 041259 4 KNIKADLPLYGTIIWGLCIESKFEDSKLLLSEMK 37 (257)
Q Consensus 4 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 37 (257)
+|++||..+|++||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788888888888888888888888888888763
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=9.7e-08 Score=71.62 Aligned_cols=62 Identities=15% Similarity=0.047 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 186 NAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
...+.+...|...|..++++.++++.+.. .||....+.|.+.+...+.+.+|.+.|......
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45567778888999999999999998874 689999999999999999999999999877654
No 72
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.17 E-value=8.6e-08 Score=81.63 Aligned_cols=230 Identities=13% Similarity=0.032 Sum_probs=158.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc-----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTA-----NTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTF 83 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (257)
+...|-..|....+.++++.|.++.+++... +.+ -...|.++++.-...|.-+...++|+++.+. --....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 3445777777788888888888888887654 222 2235677777666667777778888887764 2234567
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHc
Q 041259 84 CVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMI-PDTTAYTALIDGYLK 162 (257)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 162 (257)
..|...|.+.+..++|-++++.|.+.- ......|...+..+.+.++-+.|..++.+..+.-++ -........+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 778888888888888888888886542 356677888888888888888888888877654221 123445555666677
Q ss_pred ccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHhcCCHHHHH
Q 041259 163 HESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDE--ILCISLLKKHYERGNMDEAI 240 (257)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~ 240 (257)
.|+.+.+..+|+......++ -...|+..++.=.++|+.+.++.+|++....++.|.. ..|...+..--+.|+-..+.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 88888888888877766433 5677888888888888888888888888887776653 35565665555666655444
Q ss_pred HHH
Q 041259 241 ELQ 243 (257)
Q Consensus 241 ~~~ 243 (257)
.+=
T Consensus 1692 ~VK 1694 (1710)
T KOG1070|consen 1692 YVK 1694 (1710)
T ss_pred HHH
Confidence 443
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.17 E-value=1.1e-07 Score=73.51 Aligned_cols=228 Identities=13% Similarity=0.060 Sum_probs=136.2
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc
Q 041259 18 WGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFK----AGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKS 93 (257)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (257)
..+...|++++|.+.+++..+.. |.+...+.. ...+.. .+..+.+.+.+... ....+........+...+...
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHc
Confidence 34556788999999988887763 344444442 222222 34445555554441 111222334445566778888
Q ss_pred CcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC-CCH--HHHHHHHHHHHcccCHHHHH
Q 041259 94 GLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMI-PDT--TAYTALIDGYLKHESFKEAL 170 (257)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~ 170 (257)
|++++|...+++..+.. +.+...+..+...+...|++++|...+++....... |+. ..|..+...+...|++++|.
T Consensus 128 G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 128 GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999888764 455667778888888999999999999887765322 222 34556778888899999999
Q ss_pred HHHHHHHHcCC-CccHHHH-H--HHHHHHHhcCcHHHHHHH---HHHHHhCCC-CCcHHHHHHHHHHHHhcCCHHHHHHH
Q 041259 171 NLKNRMTEVGV-DLDLNAY-T--SLVWGLSRCGHLQEARVL---FHEMIGRGI-LPDEILCISLLKKHYERGNMDEAIEL 242 (257)
Q Consensus 171 ~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~~~a~~~---~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~ 242 (257)
.++++...... .+..... + .++..+...|....+.++ ......... ............++...|+.+.|.++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 99988754332 1112111 1 233333444433333332 111111100 11112222456667788999999999
Q ss_pred HHHHHhC
Q 041259 243 QNEMMGR 249 (257)
Q Consensus 243 ~~~m~~~ 249 (257)
++.+...
T Consensus 287 L~~l~~~ 293 (355)
T cd05804 287 LAALKGR 293 (355)
T ss_pred HHHHHHH
Confidence 9888663
No 74
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.16 E-value=4.6e-08 Score=83.19 Aligned_cols=220 Identities=13% Similarity=0.111 Sum_probs=175.1
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcc-----cHHHHHHHHHHHHhcCcHHHHHHH
Q 041259 28 DSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEV-----TVVTFCVLIDGLCKSGLVREAIDY 102 (257)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~ 102 (257)
.|.++-...+. -|.+...|...|..+...++.++|.++.++.+.. +.+ -...|.++++.-...|.-+...++
T Consensus 1443 saeDferlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1443 SAEDFERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CHHHHHHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 34444333333 2556778999999999999999999999998753 222 235677888887788888899999
Q ss_pred HHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC
Q 041259 103 FGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVD 182 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (257)
|+++.+.. -....|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.++++-+.|..++.+..+.-++
T Consensus 1520 FeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1520 FERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 99998753 3455788999999999999999999999988743 36789999999999999999999999988875222
Q ss_pred -ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041259 183 -LDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGRGLLSG 254 (257)
Q Consensus 183 -~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 254 (257)
-......-.+..-.+.|+.+.+..+|+..+.. .+-....|+..++.-.++|+.+.++.+|++.+..++.|-
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 12344555566667899999999999999876 333567899999999999999999999999999888763
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=3.7e-08 Score=77.63 Aligned_cols=208 Identities=17% Similarity=0.121 Sum_probs=152.7
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----C-CcccHHH-HHHHHHHHHhcCcHHHHHHHHHhcccC----
Q 041259 41 LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS-----R-IEVTVVT-FCVLIDGLCKSGLVREAIDYFGRMPDF---- 109 (257)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 109 (257)
.|.-..+...+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|+++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3444556777999999999999999999988754 2 1233333 344778899999999999999988531
Q ss_pred -C--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhC-----CC-CCCH-HHHHHHHHHHHcccCHHHHHHHHHHHHHc
Q 041259 110 -G--LHPNVAVYTALIDGLCKKNCIERARNLFDEMPKR-----DM-IPDT-TAYTALIDGYLKHESFKEALNLKNRMTEV 179 (257)
Q Consensus 110 -~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (257)
| .+.-..+++.|...|.+.|++++|...+++..+- +. .|.. ..++.+...+...+++++|..+++...+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 2 1122457777888999999999998888775321 11 1222 34667778889999999999999876542
Q ss_pred ---CCCc----cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-----C-CCC-cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041259 180 ---GVDL----DLNAYTSLVWGLSRCGHLQEARVLFHEMIGR-----G-ILP-DEILCISLLKKHYERGNMDEAIELQNE 245 (257)
Q Consensus 180 ---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (257)
-+.+ -..+++.+...|...|++++|.+++++++.. | ..+ ....++.+...|.+.+.+.+|.++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 1111 2468999999999999999999999988753 1 122 244677799999999999999999987
Q ss_pred HHh
Q 041259 246 MMG 248 (257)
Q Consensus 246 m~~ 248 (257)
...
T Consensus 435 ~~~ 437 (508)
T KOG1840|consen 435 AKD 437 (508)
T ss_pred HHH
Confidence 654
No 76
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.1e-08 Score=79.31 Aligned_cols=224 Identities=14% Similarity=0.120 Sum_probs=171.1
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHH
Q 041259 18 WGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVR 97 (257)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (257)
..+.+.|++.+|.-.|+...+.. |-+...|..|.......++-..|+..+++.++.. +-+..+.-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34568899999999999998875 6678899999999999999999999999999874 336788888999999999999
Q ss_pred HHHHHHHhcccCCCC-----C---CHHHHHHHHHHHHhcCcHHHHHHHHHHh-hhCCCCCCHHHHHHHHHHHHcccCHHH
Q 041259 98 EAIDYFGRMPDFGLH-----P---NVAVYTALIDGLCKKNCIERARNLFDEM-PKRDMIPDTTAYTALIDGYLKHESFKE 168 (257)
Q Consensus 98 ~a~~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (257)
.|++.++.-+....+ + +...-.. ..+.....+....++|-++ ...+..+|..+...|.-.|...|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999888765432200 0 0000000 1111222233444444444 444444688888889888999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 169 ALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD-EILCISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
|.+.|+.+....+. |..+||.|...++...+.++|+..|.+.++. .|+ ++....|..+|...|.+++|.+.|-..+
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999987543 7789999999999999999999999999985 566 3455668889999999999999988765
Q ss_pred h
Q 041259 248 G 248 (257)
Q Consensus 248 ~ 248 (257)
.
T Consensus 526 ~ 526 (579)
T KOG1125|consen 526 S 526 (579)
T ss_pred H
Confidence 4
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.11 E-value=1.3e-08 Score=75.33 Aligned_cols=218 Identities=16% Similarity=0.097 Sum_probs=145.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcH
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLV 96 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (257)
++.+.-.|++..++.-.+ ......+.+......+.+++...|+++.++ .++.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344556788888886555 333222233445567778888899877544 4444433 66777777676666655566
Q ss_pred HHHHHHHHhcccCCCCCCHHHHH-HHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHH
Q 041259 97 REAIDYFGRMPDFGLHPNVAVYT-ALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNR 175 (257)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (257)
+.+..-+++.......++..++. .....+...|++++|+++++.. .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66766666655444332333333 3345666789999999888654 2677778889999999999999999999
Q ss_pred HHHcCCCccHHHHHHHHHH----HHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 176 MTEVGVDLDLNAYTSLVWG----LSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 176 ~~~~~~~~~~~~~~~li~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
|.+.. .| .+...+..+ ......+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.
T Consensus 157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 98764 23 333334443 33345799999999998765 6678899999999999999999999999987654
No 78
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.09 E-value=1e-08 Score=83.38 Aligned_cols=214 Identities=16% Similarity=0.177 Sum_probs=141.8
Q ss_pred CCCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHH---HHHHHHHHH----hc
Q 041259 2 KGKNIKADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSE---ALSLLDEML----DS 74 (257)
Q Consensus 2 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~ 74 (257)
+-+....+...|+.++.+..+.++.+.+. .|.+.+|..|..+|...|+... +.+.+..+. ..
T Consensus 51 ~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~ 119 (1088)
T KOG4318|consen 51 EIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDH 119 (1088)
T ss_pred hcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhh
Confidence 33444556677888888888888777765 5788899999999999988654 222122221 12
Q ss_pred CCcccHHH--------------HHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC-cHHHHHHHHH
Q 041259 75 RIEVTVVT--------------FCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKN-CIERARNLFD 139 (257)
Q Consensus 75 ~~~~~~~~--------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~ 139 (257)
|+-..... -...+....-.|.++.+++++..+........ +..+++-+.... .+++-...-+
T Consensus 120 Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p---~~vfLrqnv~~ntpvekLl~~ck 196 (1088)
T KOG4318|consen 120 GVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAP---FQVFLRQNVVDNTPVEKLLNMCK 196 (1088)
T ss_pred ccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccch---HHHHHHHhccCCchHHHHHHHHH
Confidence 21111111 12233334445677777777766654332111 111244333322 2233322222
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc
Q 041259 140 EMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD 219 (257)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (257)
...+ .|++.+|.+++.+-...|+.+.|..++.+|.+.|++.+..-|..++-+ .++..-++.++..|...|+.|+
T Consensus 197 sl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~ 270 (1088)
T KOG4318|consen 197 SLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPG 270 (1088)
T ss_pred Hhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCC
Confidence 2222 479999999999999999999999999999999999888888888755 7888899999999999999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 041259 220 EILCISLLKKHYERGN 235 (257)
Q Consensus 220 ~~~~~~l~~~~~~~g~ 235 (257)
..|+...+..+.+.|.
T Consensus 271 seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 271 SETQADYVIPQLSNGQ 286 (1088)
T ss_pred cchhHHHHHhhhcchh
Confidence 9999888887777554
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.09 E-value=8.4e-08 Score=69.63 Aligned_cols=186 Identities=16% Similarity=0.018 Sum_probs=123.9
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCc-c-cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCC-H---H
Q 041259 43 ANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIE-V-TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPN-V---A 116 (257)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~ 116 (257)
.....+..+...+...|+++.|...++++...... | ...++..+..++...|++++|...++++.+.. |+ . .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 45566777778888899999999999988775321 1 12466778888888999999999999887653 32 1 1
Q ss_pred HHHHHHHHHHhc--------CcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHH
Q 041259 117 VYTALIDGLCKK--------NCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAY 188 (257)
Q Consensus 117 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (257)
++..+..++... |++++|.+.++.+....+. +...+..+...... .. .. ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~----~~------~~--------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYL----RN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHH----HH------HH--------HHHH
Confidence 344445555544 6778888888887766433 22222222111100 00 00 0111
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 189 TSLVWGLSRCGHLQEARVLFHEMIGRGI--LPDEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 189 ~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
..+...+.+.|++++|...++...+... +.....+..+..++...|++++|.++++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455678899999999999999987521 223567888999999999999999998888764
No 80
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.09 E-value=3.3e-08 Score=78.86 Aligned_cols=214 Identities=12% Similarity=0.116 Sum_probs=162.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc
Q 041259 14 GTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKS 93 (257)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (257)
..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+..+. +|++..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 345666777888888888887754 3667788888899888998888888773 77888888888888777
Q ss_pred CcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHH
Q 041259 94 GLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLK 173 (257)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (257)
.-++.|.++.+..... +-..+.....+.++++++.+.|+.-.+.+.- ...+|-.+-.+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHH
Confidence 7778887777654321 2222333334578888888888887665443 5678888888888888999998888
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 174 NRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 174 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.......+ -+...|+.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++..
T Consensus 543 ~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 543 HRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 88777543 266789999999999999999999999888876 34556677777777888999999998888765
No 81
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.08 E-value=3.7e-07 Score=75.45 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=89.4
Q ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 041259 77 EVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTAL 156 (257)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (257)
+.+...+..|.....+.|.+++|+.+++...+.. +-+......+...+.+.+++++|+..+++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 4456666777777777777777777777766653 233445556666777777777777777777666544 55566666
Q ss_pred HHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 157 IDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
..++...|++++|..+|+++...+. -+..++..+..++...|+.++|...|+...+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6667777777777777777766332 24666667777777777777777777776654
No 82
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.06 E-value=2.6e-07 Score=75.47 Aligned_cols=199 Identities=12% Similarity=0.098 Sum_probs=158.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHH
Q 041259 53 DAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIE 132 (257)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (257)
....-.|+.++|.+++.+.++.. +.....|..|...|-+.|+.+.++..+-...... +.|...|..+.......|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 33344599999999999999874 4478899999999999999999988776654443 567789999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHH----HHHHHHHHHHhcCcHHHHHHHH
Q 041259 133 RARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLN----AYTSLVWGLSRCGHLQEARVLF 208 (257)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~ 208 (257)
+|.-.|.+..+..+. +...+-.-...|-+.|+...|.+.|.++.....+.|.. ....+++.+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999998654 66666667778899999999999999999875433322 3344566777888889999999
Q ss_pred HHHHhC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041259 209 HEMIGR-GILPDEILCISLLKKHYERGNMDEAIELQNEMMGRGLLSG 254 (257)
Q Consensus 209 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 254 (257)
+..... +-..+...++.++..+.+...++.|......+..+...+|
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d 350 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKD 350 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCC
Confidence 888773 2234566788899999999999999999998887555444
No 83
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.06 E-value=1.7e-07 Score=65.69 Aligned_cols=119 Identities=9% Similarity=0.046 Sum_probs=81.8
Q ss_pred cCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-HcccC--HHHH
Q 041259 93 SGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGY-LKHES--FKEA 169 (257)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 169 (257)
.++.+++...++...+.. +.+...|..+...|...|++++|...|++..+..+. +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666655544 566677777777777777777777777777776554 666666666653 55555 4777
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 170 LNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
.+++++..+.+.. +..++..+...+...|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777776543 6667777777777777777777777777765
No 84
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=8.9e-07 Score=67.83 Aligned_cols=102 Identities=19% Similarity=0.292 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCcHHHHHH
Q 041259 147 IPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRG-ILPDEILCIS 225 (257)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 225 (257)
.|-..+|-..|..-.+.++++.+..++++..+.++. +..+|......=...|+.+.|..+|+-.+.+. +......|.+
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 344555555555555666777777777777776543 56666666666667777888888877777652 2223445666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 226 LLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
.|..-...|.+++|..+++.++++
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHHh
Confidence 666666778888888888887764
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.06 E-value=1.6e-06 Score=67.05 Aligned_cols=199 Identities=15% Similarity=0.063 Sum_probs=136.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHH---H
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGL-TANTV-ICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCV---L 86 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l 86 (257)
.|..+...+...|+.+.+...+....+... .++.. ........+...|++++|.+.+++..+.. +.+...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 455566666777888887777776655421 12221 22223345677899999999999998763 334444442 1
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccC
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPN-VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHES 165 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (257)
.......+..+.+.+.+..... ..|+ ......+...+...|++++|...+++..+..+. +...+..+..++...|+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAP--ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHhcccccCchhHHHHHhccCc--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCC
Confidence 2222234556666666655222 2333 344456667888999999999999999987654 66778888999999999
Q ss_pred HHHHHHHHHHHHHcCCC-ccH--HHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 166 FKEALNLKNRMTEVGVD-LDL--NAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 166 ~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
+++|...+++....... |+. ..|..+...+...|++++|..++++....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99999999988775322 222 34557888999999999999999998654
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.05 E-value=1.2e-07 Score=68.82 Aligned_cols=185 Identities=14% Similarity=0.042 Sum_probs=129.4
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCccc--HHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANT---VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVT--VVTF 83 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 83 (257)
....+..+...+...|++++|...|+++.... +.+. .++..+..++...|++++|...++++.+...... ..++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45567778888999999999999999998763 2222 4677888899999999999999999987632211 1245
Q ss_pred HHHHHHHHhc--------CcHHHHHHHHHhcccCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHH
Q 041259 84 CVLIDGLCKS--------GLVREAIDYFGRMPDFGLHPNV-AVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYT 154 (257)
Q Consensus 84 ~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (257)
..+..++... |+.+.|.+.++.+.+.. |+. ..+..+..... .... . .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~------~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR------L--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH------H--------HHHHH
Confidence 5555666554 78899999999987653 433 33322221111 0000 0 01122
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 155 ALIDGYLKHESFKEALNLKNRMTEVGV--DLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
.+...+...|++++|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678889999999999999887632 224578888999999999999999988887764
No 87
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.05 E-value=3e-07 Score=64.87 Aligned_cols=157 Identities=13% Similarity=0.110 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 041259 49 TTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKK 128 (257)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (257)
..+-..+.-.|+-+....+..+.... .+.+.......+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44444555555655555555554332 12244445556666666666666666666665543 55666666666666666
Q ss_pred CcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHH
Q 041259 129 NCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLF 208 (257)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 208 (257)
|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+.. |...-..+.......|+++.|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 6666666666666555333 4455566666666666666666666666555332 4555555666666666666666654
Q ss_pred H
Q 041259 209 H 209 (257)
Q Consensus 209 ~ 209 (257)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 4
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=1.2e-07 Score=68.37 Aligned_cols=238 Identities=16% Similarity=0.171 Sum_probs=170.7
Q ss_pred CCCCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccH
Q 041259 1 MKGKNIKADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTV 80 (257)
Q Consensus 1 M~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (257)
|...|+..-.--+.+++..+.+..+++.|++++..-.++. +.+......|..+|....++..|-..++++-.. .|..
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~ 77 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPEL 77 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHH
Confidence 5556766666678889999999999999999999887764 347778889999999999999999999999765 4555
Q ss_pred HHHHH-HHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHH--HHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 041259 81 VTFCV-LIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALID--GLCKKNCIERARNLFDEMPKRDMIPDTTAYTALI 157 (257)
Q Consensus 81 ~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (257)
.-|.. -...+.+.+.+..|+.+...|.+. ++...-..-+. .....+++..+..++++....+ +..+.+...
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~g 151 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLG 151 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccch
Confidence 55543 356677888999999999988763 32221111122 2345788888888888877543 344545555
Q ss_pred HHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-------------cHH---
Q 041259 158 DGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILP-------------DEI--- 221 (257)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~--- 221 (257)
-...+.|+++.|.+-|+...+.+---....|+..+.. .+.|+++.|.+...++++.|++. |..
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvg 230 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVG 230 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhccc
Confidence 5567899999999999988875433345677766654 46689999999999998876532 211
Q ss_pred -----HHHHHHHH-------HHhcCCHHHHHHHHHHHHh
Q 041259 222 -----LCISLLKK-------HYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 222 -----~~~~l~~~-------~~~~g~~~~a~~~~~~m~~ 248 (257)
.-+.++.+ +.+.|+++.|.+.+.+|.-
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence 12233333 4577999999998887754
No 89
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.03 E-value=5.3e-07 Score=63.68 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=134.6
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 041259 79 TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALID 158 (257)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (257)
|... ..+-..+...|+-+....+........ +.+.......+....+.|++..|...+++.....+ +|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHH
Confidence 4455 667777888888888888887754432 45666667789999999999999999999988755 49999999999
Q ss_pred HHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHH
Q 041259 159 GYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDE 238 (257)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (257)
+|.+.|+.+.|..-|.+..+.... ++..++.+.-.+.-.|+.+.|..++......+. -+...-..+..+....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHH
Confidence 999999999999999999987543 677888998899999999999999999987643 266677778889999999999
Q ss_pred HHHHHHH
Q 041259 239 AIELQNE 245 (257)
Q Consensus 239 a~~~~~~ 245 (257)
|..+...
T Consensus 221 A~~i~~~ 227 (257)
T COG5010 221 AEDIAVQ 227 (257)
T ss_pred HHhhccc
Confidence 9987654
No 90
>PF12854 PPR_1: PPR repeat
Probab=99.02 E-value=6.1e-10 Score=53.76 Aligned_cols=32 Identities=38% Similarity=0.548 Sum_probs=20.2
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041259 215 GILPDEILCISLLKKHYERGNMDEAIELQNEM 246 (257)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 246 (257)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.01 E-value=3.1e-07 Score=64.43 Aligned_cols=149 Identities=13% Similarity=0.204 Sum_probs=116.9
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCH
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESF 166 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (257)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+.++. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 4567788888877555433322 11 0 112366778888888888887665 899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHH-HhcCc--HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 041259 167 KEALNLKNRMTEVGVDLDLNAYTSLVWGL-SRCGH--LQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQ 243 (257)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (257)
++|...+++..+.... +...+..+..++ ...|+ .++|.+++++..+.. +-+...+..+...+.+.|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999997644 778888888764 67777 599999999999874 336678888999999999999999999
Q ss_pred HHHHhCC
Q 041259 244 NEMMGRG 250 (257)
Q Consensus 244 ~~m~~~~ 250 (257)
+++.+..
T Consensus 168 ~~aL~l~ 174 (198)
T PRK10370 168 QKVLDLN 174 (198)
T ss_pred HHHHhhC
Confidence 9998755
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.94 E-value=2.6e-07 Score=61.44 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhh
Q 041259 117 VYTALIDGLCKKNCIERARNLFDEMP 142 (257)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (257)
.|..+..++...|++++|...|+...
T Consensus 60 a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 60 AHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=9.4e-07 Score=73.10 Aligned_cols=147 Identities=9% Similarity=0.031 Sum_probs=117.2
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHH
Q 041259 41 LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTA 120 (257)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (257)
.+.+...+..|..+....|.+++|+.+++...+.. +-+......+...+.+.+++++|+..+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 44567788888888999999999999999998863 3356677788899999999999999999988765 445667777
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 041259 121 LIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSL 191 (257)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (257)
+..++...|++++|..+|+++...+.. +..++..+..++...|+.++|...|+...+.. .+....|+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 888888999999999999999885443 57888889999999999999999999887652 2334444433
No 94
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=9.5e-06 Score=62.43 Aligned_cols=233 Identities=12% Similarity=0.068 Sum_probs=174.6
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHH--HHHHHHHH--------HHhcCChHHHHHHHHHHHhcCCcc
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTV--ICTTLMDA--------YFKAGEPSEALSLLDEMLDSRIEV 78 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~ 78 (257)
|=++|--.++.-...|+.+...++|+.++.. +||-.. .|...|.. =....+.+.+.++|+..++. ++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 5556666777777889999999999999976 555322 22222222 23467899999999999884 555
Q ss_pred cHHHHHHHHH----HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHH
Q 041259 79 TVVTFCVLID----GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYT 154 (257)
Q Consensus 79 ~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (257)
...||..+-- .-.++.++..|.+++...+. .-|-..+|...|..-.+.++++.+..+++..++.++. +..+|.
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~ 475 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWS 475 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHH
Confidence 5666655444 44567889999999988764 4688899999999999999999999999999998776 888999
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH--
Q 041259 155 ALIDGYLKHESFKEALNLKNRMTEVG-VDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHY-- 231 (257)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 231 (257)
.....-...|+.+.|..+|.-..... .......|...|..=...|.+++|..+++++++.. +...+|.++...-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~ 553 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEASA 553 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccc
Confidence 98888889999999999999887753 22234567777777788999999999999999862 33445655554333
Q ss_pred ---hcC-----------CHHHHHHHHHHHHh
Q 041259 232 ---ERG-----------NMDEAIELQNEMMG 248 (257)
Q Consensus 232 ---~~g-----------~~~~a~~~~~~m~~ 248 (257)
+.| ....|.++|+....
T Consensus 554 ~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 554 SEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 233 45677777776543
No 95
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.89 E-value=1.6e-06 Score=72.89 Aligned_cols=215 Identities=10% Similarity=0.046 Sum_probs=138.5
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------------
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSR------------- 75 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------- 75 (257)
+...+..|+..+...+++++|.++.+...+.. |-....|..+...+...++...+..+ .+...-
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHH
Confidence 56678899999999999999999999777653 22333444444456666665555444 222210
Q ss_pred -----CcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCH
Q 041259 76 -----IEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDT 150 (257)
Q Consensus 76 -----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (257)
..-+..++..+..+|-+.|+.+++..+|+++.+.. +.|..+.|.+...|... ++++|.+++......-+ +.
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~ 182 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KK 182 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hh
Confidence 11123566778888888899999999999998876 56788888888888888 99999988887765411 11
Q ss_pred HHHHHHHHH-----HHcccCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHH
Q 041259 151 TAYTALIDG-----YLKHESFKEALNLKNRMTEV-GVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCI 224 (257)
Q Consensus 151 ~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (257)
.-|+.+... .....+.+.-..+.+.+... |..--..++-.+-..|...++++++..+++.+++.. +-+.....
T Consensus 183 kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~ 261 (906)
T PRK14720 183 KQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKARE 261 (906)
T ss_pred hcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHH
Confidence 111111110 11222333444444444332 222234566667778888889999999999999863 22555666
Q ss_pred HHHHHHH
Q 041259 225 SLLKKHY 231 (257)
Q Consensus 225 ~l~~~~~ 231 (257)
-++.+|.
T Consensus 262 ~l~~~y~ 268 (906)
T PRK14720 262 ELIRFYK 268 (906)
T ss_pred HHHHHHH
Confidence 6777665
No 96
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=1.8e-07 Score=74.80 Aligned_cols=209 Identities=11% Similarity=0.096 Sum_probs=158.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGL 90 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (257)
..|.-+|.+|...|+..+|..+..+..+. +|++..|..+.+......-+++|.++.+..... +-..+....
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~ 495 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLI 495 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhcccc
Confidence 46788899999999999999999888873 789999999888877777788888888766432 222223333
Q ss_pred HhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHH
Q 041259 91 CKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEAL 170 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (257)
.+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++.|.+.|.......+. +...||.+-.+|.+.++-.+|.
T Consensus 496 ~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred ccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHH
Confidence 44788999999998776554 456678888888888899999999999888776544 6788999999999999999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHH
Q 041259 171 NLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRG-ILPDEILCISLLKKHY 231 (257)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 231 (257)
..+++..+.+. -+...|...+-.....|.+++|.+.+.++.... ..-|......++....
T Consensus 574 ~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 574 RKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 99999988873 367777777888889999999999998887531 1124444444444433
No 97
>PLN02789 farnesyltranstransferase
Probab=98.89 E-value=4.2e-06 Score=63.07 Aligned_cols=197 Identities=12% Similarity=0.040 Sum_probs=142.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC-cHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 041259 48 CTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSG-LVREAIDYFGRMPDFGLHPNVAVYTALIDGLC 126 (257)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (257)
+..+-..+...++.++|+....++++.. +-+..+|+....++...| ++++++..++++.... +.+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 3444445566788999999999999863 225566776666666777 6799999999988764 455566776555555
Q ss_pred hcCcH--HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CcH
Q 041259 127 KKNCI--ERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRC---GHL 201 (257)
Q Consensus 127 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~ 201 (257)
+.|.. +++..+++.+.+.+.. +..+|+....++...|+++++++.++++.+.++. |..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 56653 6788899999888776 8899999999999999999999999999998765 677787776665554 222
Q ss_pred ----HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhC
Q 041259 202 ----QEARVLFHEMIGRGILPDEILCISLLKKHYER----GNMDEAIELQNEMMGR 249 (257)
Q Consensus 202 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~ 249 (257)
++......+++... +-+...|+.+...+... +...+|.+.+.+..+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 45667766666652 34567777777777662 3445677777776553
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=2e-07 Score=67.22 Aligned_cols=198 Identities=15% Similarity=0.181 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHH-HHH
Q 041259 46 VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTAL-IDG 124 (257)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~ 124 (257)
.-+.+.+..+.+..++..|++++..-.+.. +.+....+.+..+|....++..|-..++++-.. .|...-|... ...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 345666777788899999999998887763 227778888999999999999999999999765 5766666543 567
Q ss_pred HHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHH--HHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHH
Q 041259 125 LCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDG--YLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQ 202 (257)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (257)
+.+.+.+..|+++...|... |+...-..-+.+ ..+.+++..+..++++....| +..+.+.......+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 77889999999999988764 222222222222 345788888888888765433 4555566666667899999
Q ss_pred HHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041259 203 EARVLFHEMIGR-GILPDEILCISLLKKHYERGNMDEAIELQNEMMGRGLLSG 254 (257)
Q Consensus 203 ~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 254 (257)
.|.+-|+...+- |..| ...|+ +.-+..+.|+++.|++...+++++|++-.
T Consensus 162 aAvqkFqaAlqvsGyqp-llAYn-iALaHy~~~qyasALk~iSEIieRG~r~H 212 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQP-LLAYN-LALAHYSSRQYASALKHISEIIERGIRQH 212 (459)
T ss_pred HHHHHHHHHHhhcCCCc-hhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcC
Confidence 999999998876 4543 44565 66677889999999999999999998654
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.85 E-value=3.4e-07 Score=60.86 Aligned_cols=117 Identities=14% Similarity=0.025 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccC
Q 041259 30 KLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDF 109 (257)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (257)
..++++..+. .|+. +..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++....
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4456666653 2443 4456777888899999999998888764 447788888888889999999999999988876
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHH
Q 041259 110 GLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAY 153 (257)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (257)
. +.+...+..+..++...|++++|...|+...+..+. +...+
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~ 129 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWS 129 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 4 567778888888888899999999999888776433 34444
No 100
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.84 E-value=2.6e-05 Score=62.29 Aligned_cols=100 Identities=12% Similarity=0.138 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC----------C
Q 041259 82 TFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPN---VAVYTALIDGLCKKNCIERARNLFDEMPKRDMI----------P 148 (257)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~ 148 (257)
.|..+.+.|-..|+++.|..+|++..+...+-- ..+|......-.+..+++.|+++++......-. |
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 355666667777777777777777665443221 234444555555666677777766665322111 1
Q ss_pred -------CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCC
Q 041259 149 -------DTTAYTALIDGYLKHESFKEALNLKNRMTEVGV 181 (257)
Q Consensus 149 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (257)
+...|+..+..--..|-++....+++++.+..+
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 223344444444455666666666666655443
No 101
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.82 E-value=1.3e-06 Score=67.27 Aligned_cols=125 Identities=18% Similarity=0.121 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 041259 116 AVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGL 195 (257)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 195 (257)
.....|+..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|.+++.+..+... -+..........|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 344566777777899999999999998875 34 455678888888888999999998887643 3677788888889
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 196 SRCGHLQEARVLFHEMIGRGILPD-EILCISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
...++++.|..+.+++... .|+ ..+|..|..+|...|+++.|+-.++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999985 454 5699999999999999999999988775
No 102
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.4e-05 Score=56.95 Aligned_cols=221 Identities=14% Similarity=0.109 Sum_probs=121.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHH-HHHHHHhcCCcccHHHHHHHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALS-LLDEMLDSRIEVTVVTFCVLIDGL 90 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~ 90 (257)
.-..+-++|...|.+..... ++.... .|.......+......-++.+.-+. +.+.+.......+......-...|
T Consensus 43 ~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~ 118 (299)
T KOG3081|consen 43 LDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIY 118 (299)
T ss_pred HHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHh
Confidence 33345566666666544332 333222 3444444444444443444433333 333333332232223333344566
Q ss_pred HhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc----ccCH
Q 041259 91 CKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLK----HESF 166 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 166 (257)
...|++++|++..+.. -+......=+..+.+..+.+-|.+.++.|.+.+ +..|.+.|..++.+ .+..
T Consensus 119 ~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhh
Confidence 7777777777777652 122233333445566677777777777777642 55666666666543 3456
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHH
Q 041259 167 KEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMD-EAIELQNE 245 (257)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~ 245 (257)
.+|.-+|++|.+. ..|++.+.+-...++...|++++|..++++.+.... -++.+...++.+....|... ...+.+.+
T Consensus 190 qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 7777777777664 456777777777777777778888777777776532 24555555555544455443 33444444
Q ss_pred HH
Q 041259 246 MM 247 (257)
Q Consensus 246 m~ 247 (257)
+.
T Consensus 268 Lk 269 (299)
T KOG3081|consen 268 LK 269 (299)
T ss_pred HH
Confidence 43
No 103
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.4e-05 Score=56.89 Aligned_cols=226 Identities=14% Similarity=0.132 Sum_probs=110.0
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHH
Q 041259 6 IKADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCV 85 (257)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (257)
..|+...|+ ++.+.-.|++..++..-...... +-+...-..+.++|...|.+.... ..+.... .|.......
T Consensus 6 ~g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~ 77 (299)
T KOG3081|consen 6 AGPEDELFN--IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRL 77 (299)
T ss_pred cCcchhHHH--HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHH
Confidence 334434443 33334456665555544333322 122233333444555555543322 2222221 333333333
Q ss_pred HHHHHHhcCcHHH-HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccc
Q 041259 86 LIDGLCKSGLVRE-AIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHE 164 (257)
Q Consensus 86 ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (257)
+......-++.+. ..++.+.+.......+......-...|+..|++++|++..+... +......=+..+.+..
T Consensus 78 ~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~ 151 (299)
T KOG3081|consen 78 LAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMH 151 (299)
T ss_pred HHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHH
Confidence 3333333333322 22334444433322332333333445666777777776665521 2223333334445666
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH----hcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 041259 165 SFKEALNLKNRMTEVGVDLDLNAYTSLVWGLS----RCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAI 240 (257)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 240 (257)
+.+-|.+.++.|.+.. +..|.+.|..++. ..+.+.+|.-+|++|.++ ..|+..+.+-...++...|++++|.
T Consensus 152 r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe 227 (299)
T KOG3081|consen 152 RFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAE 227 (299)
T ss_pred HHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHH
Confidence 6677777777766642 4445554444443 344566677777777654 4566666666666667777777777
Q ss_pred HHHHHHHhC
Q 041259 241 ELQNEMMGR 249 (257)
Q Consensus 241 ~~~~~m~~~ 249 (257)
.++++.+.+
T Consensus 228 ~lL~eaL~k 236 (299)
T KOG3081|consen 228 SLLEEALDK 236 (299)
T ss_pred HHHHHHHhc
Confidence 777766554
No 104
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.80 E-value=8.1e-07 Score=58.51 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 041259 117 VYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLS 196 (257)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 196 (257)
....+...+...|++++|...++.+...+.. +...+..+...+...|++++|...++...+.+ +.+...+..+..++.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 3444445555556666666666555554332 45555555555555666666666666555543 224455555555566
Q ss_pred hcCcHHHHHHHHHHHHhC
Q 041259 197 RCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~ 214 (257)
..|++++|...++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666655553
No 105
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=1.6e-05 Score=56.21 Aligned_cols=188 Identities=18% Similarity=0.139 Sum_probs=141.0
Q ss_pred cCChhhHHHHHHHHHHc---C-CCccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHH
Q 041259 23 ESKFEDSKLLLSEMKEN---G-LTANTV-ICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVR 97 (257)
Q Consensus 23 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (257)
..+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++...- +-+..+-..-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 45678888888887643 3 445544 35566667778899999999999988763 334444444444556679999
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHH
Q 041259 98 EAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMT 177 (257)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (257)
+|.++++.+.... +.|..++-.=+...-..|+..+|++-+....+.-+. |...|..+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999998876 556677776666777788888999998888877444 99999999999999999999999999998
Q ss_pred HcCCCccHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhC
Q 041259 178 EVGVDLDLNAYTSLVWGLSRCG---HLQEARVLFHEMIGR 214 (257)
Q Consensus 178 ~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~ 214 (257)
-..+ .++..+..+...+...| +...+.+++.+.++.
T Consensus 182 l~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8643 35566666666555444 566788888888875
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=4e-06 Score=65.65 Aligned_cols=228 Identities=14% Similarity=0.072 Sum_probs=166.4
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHH-
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLI- 87 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll- 87 (257)
+...|..|-......++-..|+..+.+..+.. +-+....-.|.-.|...|.-..|++.+++.+...++ ..|...-
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~---y~~l~~a~ 393 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK---YVHLVSAG 393 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc---chhccccC
Confidence 55678888888888888889999999999875 567788888999999999999999999988654311 0000000
Q ss_pred --------HHHHhcCcHHHHHHHHHhc-ccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 041259 88 --------DGLCKSGLVREAIDYFGRM-PDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALID 158 (257)
Q Consensus 88 --------~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (257)
..+.....+....++|-++ ...+..+|..+...|.-.|.-.|++++|.+.|+..+...+. |...||-|..
T Consensus 394 ~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGA 472 (579)
T KOG1125|consen 394 ENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGA 472 (579)
T ss_pred ccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhH
Confidence 1122222344444555444 34443467778888888899999999999999999987665 8899999999
Q ss_pred HHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC---------CCCCcHHHHHHHHHH
Q 041259 159 GYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR---------GILPDEILCISLLKK 229 (257)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~ 229 (257)
.+....+.++|...|++..+..+.- +.+...|.-+|...|.+++|...|-..+.. +..++...|..|=.+
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~a 551 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLA 551 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHH
Confidence 9999999999999999999864322 334455666889999999999998776542 112234577777777
Q ss_pred HHhcCCHHHHHHH
Q 041259 230 HYERGNMDEAIEL 242 (257)
Q Consensus 230 ~~~~g~~~~a~~~ 242 (257)
+.-.++.|.+.+.
T Consensus 552 ls~~~~~D~l~~a 564 (579)
T KOG1125|consen 552 LSAMNRSDLLQEA 564 (579)
T ss_pred HHHcCCchHHHHh
Confidence 7777777755443
No 107
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.1e-05 Score=60.91 Aligned_cols=237 Identities=16% Similarity=0.099 Sum_probs=123.4
Q ss_pred CCCChhhHHHHHHHHHhc--CChhhHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHH
Q 041259 6 IKADLPLYGTIIWGLCIE--SKFEDSKLLLSEMKEN-GLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVT 82 (257)
Q Consensus 6 ~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (257)
+.|........+.+++.. ++...|...+--+... -++.|......+..++...|+.++|+..|++..... +-+...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhh
Confidence 334444444444444433 3333333333333222 245566666667777777777777777776665432 111222
Q ss_pred HHHHHHHHHhcCcH----------------------------------HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 041259 83 FCVLIDGLCKSGLV----------------------------------REAIDYFGRMPDFGLHPNVAVYTALIDGLCKK 128 (257)
Q Consensus 83 ~~~ll~~~~~~~~~----------------------------------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (257)
.....-.+.+.|+. +.|+.+-++.++.. +.+...+-.-...+...
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 22222223334444 44444444443332 22233333333455556
Q ss_pred CcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHH-HHH-HhcCcHHHHHH
Q 041259 129 NCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLV-WGL-SRCGHLQEARV 206 (257)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~-~~~~~~~~a~~ 206 (257)
+++++|.-.|+......+. +...|.-|+.+|...|.+.+|..+-+...+. .+-+..+...+. ..| ....--++|.+
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 6677776666666554322 5667777777777777777776665554443 222444444441 222 22223456666
Q ss_pred HHHHHHhCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 207 LFHEMIGRGILPDE-ILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 207 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
+++..++. .|+- .....+...+...|..+.++.+++.-..
T Consensus 426 f~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 426 FAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 66665553 4442 3456677778888999999998887654
No 108
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.73 E-value=1.6e-06 Score=57.13 Aligned_cols=95 Identities=17% Similarity=0.065 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 041259 48 CTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK 127 (257)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (257)
...+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...+++..+.+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3344444555555555555555554432 2244444455555555555555555555544332 2333444444445555
Q ss_pred cCcHHHHHHHHHHhhhC
Q 041259 128 KNCIERARNLFDEMPKR 144 (257)
Q Consensus 128 ~~~~~~a~~~~~~~~~~ 144 (257)
.|++++|...|+...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555544443
No 109
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=3e-05 Score=59.86 Aligned_cols=139 Identities=21% Similarity=0.238 Sum_probs=90.5
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhcCcHH
Q 041259 54 AYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPN-VAVYTALIDGLCKKNCIE 132 (257)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 132 (257)
.+...|+++.|+..++.+... .+-|+..+......+.+.++..+|.+.++.+... .|+ ....-.+..++.+.|+++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 344667777777777777665 2334455555667777777777777777777665 344 445556667777777777
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 041259 133 RARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMI 212 (257)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 212 (257)
+|..+++........ |+..|..|.++|...|+..++..-.. ..+...|++++|...+....
T Consensus 392 eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHH
Confidence 777777777666544 67777777777777777666654332 23445567777777766666
Q ss_pred hC
Q 041259 213 GR 214 (257)
Q Consensus 213 ~~ 214 (257)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 54
No 110
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.70 E-value=5.9e-06 Score=55.10 Aligned_cols=124 Identities=16% Similarity=0.181 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCccc--HHHHHHHH
Q 041259 13 YGTIIWGLCIESKFEDSKLLLSEMKENGLTAN---TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVT--VVTFCVLI 87 (257)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll 87 (257)
|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+........|. ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444443 2555555555555555432 111 11222333445555555555555555555432221 11223344
Q ss_pred HHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 041259 88 DGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDE 140 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (257)
..+...|++++|+..++...... .....+......+.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555555555554433221 2223334444555555555555555543
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.70 E-value=7.3e-06 Score=69.02 Aligned_cols=202 Identities=12% Similarity=0.086 Sum_probs=138.5
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHH------------------H
Q 041259 42 TANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDY------------------F 103 (257)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~------------------~ 103 (257)
+.+...+..|+..+...+++++|.++.+...+.. +-....|..+...+.+.++.+.+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHH
Confidence 3456788999999999999999999999777652 22334444444466666666555444 1
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCc
Q 041259 104 GRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDL 183 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (257)
..+.+. .-+..++..+..+|-+.|+.++|..+++++.+.++. |..+.|.+...|... +.++|.+++.+....-+
T Consensus 107 ~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i-- 180 (906)
T PRK14720 107 DKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI-- 180 (906)
T ss_pred HHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--
Confidence 122211 122356677888889999999999999999999865 899999999999999 99999999988876421
Q ss_pred cHHHHHHHHH----H-HHhcCcHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 184 DLNAYTSLVW----G-LSRCGHLQEARVLFHEMIGR-GILPDEILCISLLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 184 ~~~~~~~li~----~-~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
+..-|+.+.. . .....+++.-..+.+.+... |..--..++..+...|-...+++++..+++.+++..
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 1111211111 1 11233445555555555544 433445667777788888999999999999998753
No 112
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.69 E-value=9.8e-05 Score=60.13 Aligned_cols=238 Identities=14% Similarity=0.030 Sum_probs=162.6
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CC--------
Q 041259 6 IKADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS-RI-------- 76 (257)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-------- 76 (257)
..|++..| +.--|+..++++.|.+...+..+.+-..+...|..|...+...+++.+|+.+.+..... |.
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 34444444 44456678899999999999998866788899999999999999999999998877643 11
Q ss_pred ----------cccHHHHHHHHHHHHh------cCc-----------------HHHHHHHHHhc--------ccCC-----
Q 041259 77 ----------EVTVVTFCVLIDGLCK------SGL-----------------VREAIDYFGRM--------PDFG----- 110 (257)
Q Consensus 77 ----------~~~~~~~~~ll~~~~~------~~~-----------------~~~a~~~~~~~--------~~~~----- 110 (257)
.-...|...++..+-. .++ ..++.+....+ ...+
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 0011222222222220 000 00010000000 0000
Q ss_pred ----CC--CC------HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 041259 111 ----LH--PN------VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 111 ----~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
.. |+ ...|......+.+.+..++|...+.+.....+. ....|......+...|++++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 00 11 223445556677778888888777777665433 556677777778889999999999998887
Q ss_pred cCCCccHHHHHHHHHHHHhcCcHHHHHH--HHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 179 VGVDLDLNAYTSLVWGLSRCGHLQEARV--LFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 179 ~~~~~~~~~~~~li~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.++. ++....++..++.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.+.|.+.|....+
T Consensus 713 ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 713 LDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred cCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 6543 56788999999999999888888 999998875 34788999999999999999999999998765
No 113
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.69 E-value=1.6e-06 Score=66.72 Aligned_cols=124 Identities=16% Similarity=0.114 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 041259 48 CTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK 127 (257)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (257)
...|+..+...++++.|+.+++++.+.. |+ ....+++.+...++-.+|.+++++..... +.+......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455566666677888888888877663 33 34456677777777777777777776542 3455555666667777
Q ss_pred cCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHH
Q 041259 128 KNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMT 177 (257)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (257)
.++++.|+.+.+++.+..+. +..+|..|..+|...|+++.|+..+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888887776443 55678888888888888888877777553
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=3.8e-05 Score=67.03 Aligned_cols=238 Identities=11% Similarity=0.062 Sum_probs=152.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCc--c-c
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKEN----GL-TANTVICTTLMDAYFKAGEPSEALSLLDEMLDS----RIE--V-T 79 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 79 (257)
..+.+...+...|++++|...+.+.... |. .....++..+...+...|+++.|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3455566677889999999998887643 11 111234556667788899999999988876542 211 1 2
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHhcccCC--CCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCC--CCCCHH--
Q 041259 80 VVTFCVLIDGLCKSGLVREAIDYFGRMPDFG--LHP--NVAVYTALIDGLCKKNCIERARNLFDEMPKRD--MIPDTT-- 151 (257)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~-- 151 (257)
...+..+...+...|++++|...+.+..... ..+ ....+..+...+...|++++|...++...... ......
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 2334455666777899999998888764321 112 23344456667788999999998888764321 110110
Q ss_pred H-H-HHHHHHHHcccCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCc-HH
Q 041259 152 A-Y-TALIDGYLKHESFKEALNLKNRMTEVGVDLD---LNAYTSLVWGLSRCGHLQEARVLFHEMIGR----GILPD-EI 221 (257)
Q Consensus 152 ~-~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~ 221 (257)
. . ...+..+...|+.+.|...+........... ...+..+..++...|++++|...+++.... |..++ ..
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 1 0 1122344557889998888776544221111 112346677788899999999999988753 32222 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 222 LCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
+...+..++.+.|+.++|...+.+..+.
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666777888999999999999988763
No 115
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.68 E-value=5.7e-06 Score=55.16 Aligned_cols=124 Identities=16% Similarity=0.116 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCcc--HHHHHHHH
Q 041259 118 YTALIDGLCKKNCIERARNLFDEMPKRDMIPD---TTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLD--LNAYTSLV 192 (257)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li 192 (257)
|..++..+ ..++...+...++.+...... + ....-.+...+...|++++|...|+........|+ ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33334333 355566666666665554322 2 12222334555566666666666666666542222 12333455
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041259 193 WGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNE 245 (257)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (257)
..+...|++++|...++..... ......+......+.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666666666666543322 22333445555666666666666666654
No 116
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=3.7e-05 Score=54.44 Aligned_cols=171 Identities=11% Similarity=0.112 Sum_probs=128.8
Q ss_pred CCCChhh-HHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHH
Q 041259 6 IKADLPL-YGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFC 84 (257)
Q Consensus 6 ~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (257)
..++..+ |..++-+....|+.+.|...++++..+ +|-+...-..-.-.+-..|++++|+++++.+++.. +.|..++.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~K 124 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRK 124 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHH
Confidence 5566554 666777778899999999999999876 33333333322333456789999999999999875 44667777
Q ss_pred HHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccc
Q 041259 85 VLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHE 164 (257)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (257)
.-+-..-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-..+. +...+..+...+...|
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHh
Confidence 7677777778877888877777654 4679999999999999999999999999999876543 5556666666655544
Q ss_pred ---CHHHHHHHHHHHHHcC
Q 041259 165 ---SFKEALNLKNRMTEVG 180 (257)
Q Consensus 165 ---~~~~a~~~~~~~~~~~ 180 (257)
+.+.+.+.|.+..+..
T Consensus 203 g~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 203 GAENLELARKYYERALKLN 221 (289)
T ss_pred hHHHHHHHHHHHHHHHHhC
Confidence 5667888888888764
No 117
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=3e-05 Score=61.17 Aligned_cols=221 Identities=12% Similarity=0.048 Sum_probs=134.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC
Q 041259 15 TIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSG 94 (257)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (257)
+=++.+...|++++|......+...+ +-+...+..-+-+....+++++|+.+.+.-... ..+..-+---.-+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 45667788899999999999999875 566677777777888999999998665443321 111111122244556789
Q ss_pred cHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHH
Q 041259 95 LVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKN 174 (257)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (257)
..++|+..++-..+ .+..+...-...+.+.|++++|.++|+.+.+.+.. .+...+++-+..--.....++
T Consensus 94 k~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~~~~-- 163 (652)
T KOG2376|consen 94 KLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQVQL-- 163 (652)
T ss_pred cHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhhHHH--
Confidence 99999999984332 23345555677888999999999999999877543 222222221110000000111
Q ss_pred HHHHcCCCccHHHHHH---HHHHHHhcCcHHHHHHHHHHHHhC-------CCCCcH--H-----HHHHHHHHHHhcCCHH
Q 041259 175 RMTEVGVDLDLNAYTS---LVWGLSRCGHLQEARVLFHEMIGR-------GILPDE--I-----LCISLLKKHYERGNMD 237 (257)
Q Consensus 175 ~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~--~-----~~~~l~~~~~~~g~~~ 237 (257)
+......| ..+|.. ....+...|++.+|+++++...+. +-.-+. . .-..+..++-..|+.+
T Consensus 164 -~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 164 -LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred -HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 22222222 223333 344556788999999998877321 111111 1 1223444556789999
Q ss_pred HHHHHHHHHHhCC
Q 041259 238 EAIELQNEMMGRG 250 (257)
Q Consensus 238 ~a~~~~~~m~~~~ 250 (257)
+|.+++..+++.+
T Consensus 242 ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 242 EASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHhc
Confidence 9999888888765
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=2.8e-05 Score=59.97 Aligned_cols=126 Identities=18% Similarity=0.033 Sum_probs=91.4
Q ss_pred HHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccc
Q 041259 85 VLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHE 164 (257)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (257)
.....+...|+++.|++.+..+.... +-|...+......+.+.++.++|.+.++.+....+. .......+..++.+.|
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g 388 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcC
Confidence 33444556678888888888877652 445555556677888888888888888888776433 2556667778888888
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 165 SFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
++.+|..+++....... -|+..|..|..+|...|+..++.....+...
T Consensus 389 ~~~eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 389 KPQEAIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred ChHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 88888888888777643 4788888888888888888777766655543
No 119
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.67 E-value=5.9e-08 Score=47.43 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041259 222 LCISLLKKHYERGNMDEAIELQNEMMGRGLLSG 254 (257)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 254 (257)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777776
No 120
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.66 E-value=0.00011 Score=58.88 Aligned_cols=200 Identities=10% Similarity=0.118 Sum_probs=112.8
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-----------
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTAN---TVICTTLMDAYFKAGEPSEALSLLDEMLDSRI----------- 76 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------- 76 (257)
..|..+...|-..|+++.|..+|++..+...+.- ..+|..-...=.+..+++.|++++++......
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4577788888888888888888888877543322 34555555666667778888888777653211
Q ss_pred cc------cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCH
Q 041259 77 EV------TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDT 150 (257)
Q Consensus 77 ~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (257)
++ +...|...++.--..|-++....+++++.+..+ .++...-.....+-.+.-++++.+++++-...-..|+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 11 223445555555556667777777777766553 33333333344444555667777777665544333433
Q ss_pred -HHHHHHHHHHHc---ccCHHHHHHHHHHHHHcCCCccHHHHHHH--HHHHHhcCcHHHHHHHHHHHH
Q 041259 151 -TAYTALIDGYLK---HESFKEALNLKNRMTEVGVDLDLNAYTSL--VWGLSRCGHLQEARVLFHEMI 212 (257)
Q Consensus 151 -~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~~~ 212 (257)
..|+..+.-+.+ ....+.|..+|++..+ |.+|...-+-.| ...=-+.|-...|..++++..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344444433322 3356777777777776 444432221111 112223455556666666544
No 121
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.63 E-value=7.6e-08 Score=46.69 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041259 221 ILCISLLKKHYERGNMDEAIELQNEMMGRGLLS 253 (257)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 253 (257)
.+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 122
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.63 E-value=7.2e-08 Score=47.11 Aligned_cols=33 Identities=36% Similarity=0.650 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcc
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTAN 44 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 44 (257)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777665
No 123
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.62 E-value=2.9e-05 Score=63.07 Aligned_cols=239 Identities=17% Similarity=0.149 Sum_probs=157.1
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcc-cHHHHH
Q 041259 6 IKADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEV-TVVTFC 84 (257)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 84 (257)
+.-|...|..+.-++...|+++.+-+.|++....- --....|..+...+...|.-..|..+++........| ++..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 44578889999999999999999999999887642 3456678888888888898888998888776553223 344444
Q ss_pred HHHHHHH-hcCcHHHHHHHHHhcccC--CC--CCCHHHHHHHHHHHHh-----------cCcHHHHHHHHHHhhhCCCCC
Q 041259 85 VLIDGLC-KSGLVREAIDYFGRMPDF--GL--HPNVAVYTALIDGLCK-----------KNCIERARNLFDEMPKRDMIP 148 (257)
Q Consensus 85 ~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~ 148 (257)
..-..|. +.+..++++.+-.+..+. +. ......|..+.-+|.. .....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 3344443 456677777766666541 10 1222334444444432 22356777888888776654
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041259 149 DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLK 228 (257)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (257)
|+.....+.--|...++.+.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+..... +.-|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhh
Confidence 444444455557778899999999999998866668899999999999999999999999887764 1111211111222
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 041259 229 KHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 229 ~~~~~g~~~~a~~~~~~m~ 247 (257)
.-..-++.++++.....+.
T Consensus 556 i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKL 574 (799)
T ss_pred hhhhcccHHHHHHHHHHHH
Confidence 2223566666666555554
No 124
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.62 E-value=1.4e-06 Score=67.44 Aligned_cols=124 Identities=14% Similarity=0.152 Sum_probs=99.0
Q ss_pred CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHH
Q 041259 40 GLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS--RIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAV 117 (257)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 117 (257)
+.+.+......+++.+....+.+.+..++.+.... ....-+.|..++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45667777778888888888888899988888765 2222345667899999999999999999999889999999999
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc
Q 041259 118 YTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKH 163 (257)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (257)
++.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998887777666767766666555544
No 125
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.61 E-value=9.8e-08 Score=46.30 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTA 43 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 43 (257)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777776655
No 126
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.60 E-value=0.00014 Score=63.64 Aligned_cols=232 Identities=12% Similarity=0.037 Sum_probs=149.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc----CC-cccHHHHHHHH
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGLTANT----VICTTLMDAYFKAGEPSEALSLLDEMLDS----RI-EVTVVTFCVLI 87 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll 87 (257)
...+...|++++|...++.....-...+. ...+.+...+...|++++|...+++.... |. .+...++..+.
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 34456789999999999988763111121 23455666778899999999999888642 11 11223455667
Q ss_pred HHHHhcCcHHHHHHHHHhccc----CCCC--C-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhC----CCCCCHHHHHHH
Q 041259 88 DGLCKSGLVREAIDYFGRMPD----FGLH--P-NVAVYTALIDGLCKKNCIERARNLFDEMPKR----DMIPDTTAYTAL 156 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 156 (257)
..+...|+++.|...+++... .+.. + ....+..+...+...|++++|...+.+.... +.......+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 788889999999998877643 2211 1 2233445566677889999999998876542 111123445556
Q ss_pred HHHHHcccCHHHHHHHHHHHHHcCC--CccHH--HH--HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc---HHHHHHHH
Q 041259 157 IDGYLKHESFKEALNLKNRMTEVGV--DLDLN--AY--TSLVWGLSRCGHLQEARVLFHEMIGRGILPD---EILCISLL 227 (257)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~--~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 227 (257)
...+...|++++|.+.+........ ..... .. ...+..+...|+.+.|..++........... ...+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 6778889999999999888754211 11110 10 1122445568899999998876554211111 11234567
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 041259 228 KKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.++...|++++|...+.+...
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 778889999999999998765
No 127
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.59 E-value=2.2e-06 Score=66.29 Aligned_cols=125 Identities=12% Similarity=0.142 Sum_probs=103.0
Q ss_pred cCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccC--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHH
Q 041259 74 SRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDF--GLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTT 151 (257)
Q Consensus 74 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (257)
.+.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|...|..++++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345567778888899999999999999999888654 222223455799999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 041259 152 AYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRC 198 (257)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 198 (257)
+++.++..+.+.|++..|.++...|...+.-.++.|+..-+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988777666767766666655544
No 128
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.57 E-value=6.7e-06 Score=61.12 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh-cCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 041259 82 TFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK-KNCIERARNLFDEMPKRDMIPDTTAYTALIDGY 160 (257)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (257)
+|..+++...+.+..+.|.++|.+..+.+ ..+...|......-.. .++.+.|.++|+...+.- ..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 44455555555555555555555554322 1223333333333222 344444555555554442 22444555555555
Q ss_pred HcccCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 161 LKHESFKEALNLKNRMTEVGVDLD---LNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
...++.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443 2211 13455555555555555555555555544
No 129
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.57 E-value=0.00011 Score=54.47 Aligned_cols=226 Identities=13% Similarity=0.100 Sum_probs=163.8
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCc--cHHHH------------HHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHH
Q 041259 18 WGLCIESKFEDSKLLLSEMKENGLTA--NTVIC------------TTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTF 83 (257)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (257)
..+.+.|.+++|..=|+...+..... ....+ ...+..+.-.|+...|+.....+++.. +.+...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 35678999999999999998874211 11111 223344566789999999999999874 4588889
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHH----HHHHH---
Q 041259 84 CVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTT----AYTAL--- 156 (257)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l--- 156 (257)
..-..+|...|++..|..=+....+.. .-+..++--+-..+...|+.+.++..+++.++.++ |.. .|-.+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp--dHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP--DHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc--chhhHHHHHHHHHHH
Confidence 999999999999999988887776654 34555666677788889999999999999887643 321 12111
Q ss_pred ------HHHHHcccCHHHHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc-HHHHHHH
Q 041259 157 ------IDGYLKHESFKEALNLKNRMTEVGVDLDL---NAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD-EILCISL 226 (257)
Q Consensus 157 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 226 (257)
+......++|-++.+-.+...+..+.... ..+..+-.++...+++.+|++...+.++. .|+ ..++-.-
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dR 347 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHH
Confidence 12234567788888877777766443222 34455667778889999999999998874 454 7777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 041259 227 LKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 227 ~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
..+|.-...++.|+.-|+...+.
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhc
Confidence 88888888899999888877654
No 130
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.55 E-value=0.00012 Score=58.51 Aligned_cols=118 Identities=11% Similarity=-0.038 Sum_probs=50.8
Q ss_pred hcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHH
Q 041259 22 IESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAID 101 (257)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (257)
..|+-++|.+......+.. .-+...|..+.-.+....++++|++.|+.....+ +.+...+.-+.-.-++.++++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 3445555555544444432 2344445544444444455555555555554432 1133344333333344444444444
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 041259 102 YFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMP 142 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (257)
...++.+.. +.....|..+..++.-.|+...|..+++...
T Consensus 131 tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 131 TRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333321 1222334444444444444444444444443
No 131
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.55 E-value=0.00011 Score=58.77 Aligned_cols=232 Identities=13% Similarity=0.081 Sum_probs=155.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGL 90 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (257)
..|..++..| ..+++...+.+.+.+.+. .+--..+.....-.+...|+.++|......-....+. +...|..+.-.+
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHH
Confidence 4466666655 567888888888888773 3444555555555677789999999998888775443 778898888888
Q ss_pred HhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHH
Q 041259 91 CKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEAL 170 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (257)
....++++|.+.|......+ +.|...+.-+.-.-...|+++..........+..+. ....|..++.++.-.|+...|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998765 567778887777778888999888888887776443 5678888888999999999999
Q ss_pred HHHHHHHHcC-CCccHHHHHHHHH------HHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 041259 171 NLKNRMTEVG-VDLDLNAYTSLVW------GLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQ 243 (257)
Q Consensus 171 ~~~~~~~~~~-~~~~~~~~~~li~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (257)
.+++...+.. -.|+...+..... ...+.|.+++|.+.+..-... +......-..-...+.+.+++++|..++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 9999887764 2355554432222 223444444444444332221 1111111122333344555555555555
Q ss_pred HHHHh
Q 041259 244 NEMMG 248 (257)
Q Consensus 244 ~~m~~ 248 (257)
..++.
T Consensus 243 ~~Ll~ 247 (700)
T KOG1156|consen 243 RRLLE 247 (700)
T ss_pred HHHHh
Confidence 55544
No 132
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=1.7e-05 Score=58.86 Aligned_cols=198 Identities=13% Similarity=0.060 Sum_probs=128.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHH-----HHhcCcHHHHHHHHHhcccCCCCCCHH-HHHHHH
Q 041259 49 TTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDG-----LCKSGLVREAIDYFGRMPDFGLHPNVA-VYTALI 122 (257)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 122 (257)
-.|+-.|.+.+++.+|..+.+++.. ..|.......+..+ ........-|.+.|+-.-.++..-|.. --.++.
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 3455567888999999888777642 12333222222222 222334566777777665554333322 223455
Q ss_pred HHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHH-HHHHHHHHhcCcH
Q 041259 123 DGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAY-TSLVWGLSRCGHL 201 (257)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~ 201 (257)
+.+.-..++++++..++.+...-.. |...--.+.++++..|++.+|+++|-.+....++ |..+| ..+.++|.+.+++
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCc
Confidence 5566667788888888888776444 3333445788999999999999999887766555 45555 5567899999999
Q ss_pred HHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041259 202 QEARVLFHEMIGRGILPDEI-LCISLLKKHYERGNMDEAIELQNEMMGRGLLS 253 (257)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 253 (257)
+.|+.++-.+.. +.+.. ....+..-|.+.+++--|.+.|+.+...+-.|
T Consensus 445 ~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 445 QLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 999887654432 22333 34445568889999999999999887665444
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.49 E-value=0.00021 Score=56.15 Aligned_cols=150 Identities=13% Similarity=0.187 Sum_probs=115.4
Q ss_pred HHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHcccCHHHHHHHH
Q 041259 96 VREAIDYFGRMPDFG-LHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIP-DTTAYTALIDGYLKHESFKEALNLK 173 (257)
Q Consensus 96 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (257)
.+....+++++...- +.|+ .+|..+++.-.+..-++.|..+|.+..+.+..+ ++.+.++++..|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 444555566554322 2333 467788888888999999999999999887776 6777788887666 57889999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 174 NRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD--EILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 174 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
+--.+. ..-++.-....+..+...++-..+..+|++....++.|+ ...|..++.--..-|+...+.++-+++..
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 876654 233555566778888899999999999999998866655 46899999988999999999998887754
No 134
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.49 E-value=2.7e-06 Score=52.25 Aligned_cols=75 Identities=13% Similarity=0.278 Sum_probs=38.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHhcCCcccHHHHHHHH
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGL-TANTVICTTLMDAYFKAG--------EPSEALSLLDEMLDSRIEVTVVTFCVLI 87 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (257)
|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|++|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444555555555555555555 555555555555544432 1233445555555555555555555555
Q ss_pred HHHH
Q 041259 88 DGLC 91 (257)
Q Consensus 88 ~~~~ 91 (257)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 4443
No 135
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.42 E-value=1.8e-05 Score=58.87 Aligned_cols=131 Identities=12% Similarity=0.129 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDA-YFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDG 89 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (257)
.+|..++....+.+..+.|..+|.++.+.+ ..+...|...... +...++.+.|.++|+...+. .+.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888999989889999999999998653 3344555544444 33356777799999998876 45577888889999
Q ss_pred HHhcCcHHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHhhhC
Q 041259 90 LCKSGLVREAIDYFGRMPDFGLHPN---VAVYTALIDGLCKKNCIERARNLFDEMPKR 144 (257)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (257)
+...++.+.|..+|++.... +.++ ...|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998765 2222 248888898888999999999998887764
No 136
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.42 E-value=6.3e-06 Score=50.67 Aligned_cols=74 Identities=11% Similarity=0.333 Sum_probs=35.8
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCC-CCCHHHHHHHHHHHHhcC--------cHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGL-HPNVAVYTALIDGLCKKN--------CIERARNLFDEMPKRDMIPDTTAYTALI 157 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (257)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-+.+.++++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333344555555555555555555 555555555555444321 2223344444444444555555555444
Q ss_pred HHH
Q 041259 158 DGY 160 (257)
Q Consensus 158 ~~~ 160 (257)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.39 E-value=2.7e-05 Score=49.84 Aligned_cols=98 Identities=12% Similarity=0.018 Sum_probs=56.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCc--ccHHHHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGL--TANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIE--VTVVTFCVLI 87 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll 87 (257)
++..+...+.+.|++++|.+.|..+.+... +.....+..+..++.+.|+++.|...|+.+...... ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555666666777777777766665421 111234555666666667777777777666553211 1234455566
Q ss_pred HHHHhcCcHHHHHHHHHhcccC
Q 041259 88 DGLCKSGLVREAIDYFGRMPDF 109 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~ 109 (257)
.++.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666554
No 138
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.39 E-value=1.2e-05 Score=48.85 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=4.7
Q ss_pred cCChHHHHHHHHH
Q 041259 58 AGEPSEALSLLDE 70 (257)
Q Consensus 58 ~~~~~~a~~~~~~ 70 (257)
.|++++|...+++
T Consensus 13 ~~~~~~A~~~~~~ 25 (100)
T cd00189 13 LGDYDEALEYYEK 25 (100)
T ss_pred HhcHHHHHHHHHH
Confidence 3333333333333
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.39 E-value=0.00084 Score=55.91 Aligned_cols=219 Identities=18% Similarity=0.209 Sum_probs=126.9
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHH--HHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHH
Q 041259 20 LCIESKFEDSKLLLSEMKENGLTANTVICTTLMD--AYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVR 97 (257)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (257)
....+++.+|..-...+.+.. |+.. |...+. ...+.|+.++|..+++.....+.. |..|...+-.+|.+.++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 345678888888888877652 4433 222333 356788899999888877766544 7888888888999999999
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHH----HHHHHHHhhhCCCCCCHHHHHHHHHHHHcc----cC----
Q 041259 98 EAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIER----ARNLFDEMPKRDMIPDTTAYTALIDGYLKH----ES---- 165 (257)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~---- 165 (257)
+|..+|++.... .|+......+..+|.+.+++.+ |+++++...+. ...+=.+++.+.+. ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-----~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-----AYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-----cchHHHHHHHHHHhccCCcccccc
Confidence 999999988765 4777777778888888776654 55555544332 22222222222211 11
Q ss_pred --HHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCcHHHHHHHHHH-HHhCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 041259 166 --FKEALNLKNRMTEVG-VDLDLNAYTSLVWGLSRCGHLQEARVLFHE-MIGRGILPDEILCISLLKKHYERGNMDEAIE 241 (257)
Q Consensus 166 --~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 241 (257)
..-|.+.++.+.+.+ .--+..-.......+...|++++|..++.. ..+.-..-+...-+.-+..+...+++.+..+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 122444555555443 222222233334445667788888888733 2222112222333334444455555555555
Q ss_pred HHHHHHhC
Q 041259 242 LQNEMMGR 249 (257)
Q Consensus 242 ~~~~m~~~ 249 (257)
+-.++..+
T Consensus 248 l~~~Ll~k 255 (932)
T KOG2053|consen 248 LSSRLLEK 255 (932)
T ss_pred HHHHHHHh
Confidence 55555443
No 140
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.39 E-value=1.4e-05 Score=48.60 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh
Q 041259 13 YGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCK 92 (257)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (257)
+..+...+...|++++|...++.+.+.. +.+...+..+..++...+++++|.+.++...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445555666666777777666666542 2333555556666666666666666666665543 2233455555566666
Q ss_pred cCcHHHHHHHHHhccc
Q 041259 93 SGLVREAIDYFGRMPD 108 (257)
Q Consensus 93 ~~~~~~a~~~~~~~~~ 108 (257)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666655543
No 141
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00013 Score=57.83 Aligned_cols=183 Identities=15% Similarity=0.129 Sum_probs=116.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 041259 50 TLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKN 129 (257)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (257)
+=++.+...+++++|.+...+++..+ +-+...+..-+-+..+.+.+++|+++.+.-... ..+...+--=..+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 34456778899999999999999876 557788888888999999999999776643321 111111112233456799
Q ss_pred cHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHH--HHHHHHHHHHhcCcHHHHHHH
Q 041259 130 CIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLN--AYTSLVWGLSRCGHLQEARVL 207 (257)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~ 207 (257)
..++|+..++-.... +..+...-.+.+.+.|++++|+++|+.+.+.+.. +.. .-..++.+-. -..+. +
T Consensus 94 k~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~a----~l~~~-~ 163 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVAA----ALQVQ-L 163 (652)
T ss_pred cHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH----hhhHH-H
Confidence 999999999833322 3346666778889999999999999999887543 211 1111111111 11111 1
Q ss_pred HHHHHhCCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 208 FHEMIGRGILP--DEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 208 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
+......| +...+......+...|++.+|++++....+
T Consensus 164 ---~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 164 ---LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred ---HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22222233 222233344556789999999999998743
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.35 E-value=3.8e-05 Score=49.15 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC--CCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC--ccHHHHHHHH
Q 041259 117 VYTALIDGLCKKNCIERARNLFDEMPKRDMI--PDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVD--LDLNAYTSLV 192 (257)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li 192 (257)
++..+...+.+.|++++|.+.|+.+...... .....+..+..++...|+++.|...++.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555666666666676666666554321 11234455666666666666666666666553221 1234455556
Q ss_pred HHHHhcCcHHHHHHHHHHHHhC
Q 041259 193 WGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
.++...|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666654
No 143
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.35 E-value=7.3e-07 Score=42.09 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041259 222 LCISLLKKHYERGNMDEAIELQNEMMGRGL 251 (257)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 251 (257)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 466666666666666666666666666553
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.34 E-value=3.1e-06 Score=50.61 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=48.8
Q ss_pred ccCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 041259 163 HESFKEALNLKNRMTEVGVD-LDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIE 241 (257)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 241 (257)
.|+++.|..+++++.+.... ++...+..+..++.+.|++++|..+++. .+.+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777765432 2444455567777777777777777766 22211 122333445667777777777777
Q ss_pred HHHH
Q 041259 242 LQNE 245 (257)
Q Consensus 242 ~~~~ 245 (257)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7764
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.33 E-value=3.6e-06 Score=50.34 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHHHhcCCc-ccHHHHHHHHHHHHhcCcHHHHHHHHHh
Q 041259 59 GEPSEALSLLDEMLDSRIE-VTVVTFCVLIDGLCKSGLVREAIDYFGR 105 (257)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 105 (257)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444444444443211 1222233344444444444444444444
No 146
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.33 E-value=0.00047 Score=50.17 Aligned_cols=184 Identities=11% Similarity=0.012 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHH---HHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHH
Q 041259 45 TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTF---CVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTAL 121 (257)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (257)
...+-.....+...|++++|.+.|+++...... +.... -.+..++.+.+++++|...+++..+.........+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 333334445566789999999999999875322 22222 34667888899999999999888765322222233333
Q ss_pred HHHHHh--cC---------------cH---HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCC
Q 041259 122 IDGLCK--KN---------------CI---ERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGV 181 (257)
Q Consensus 122 ~~~~~~--~~---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (257)
+.+.+. .+ +. ..|... +..++.-|-...-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~---------------~~~li~~yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRD---------------FSKLVRGYPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHH---------------HHHHHHHCcCChhHHHHHHHHHHHHHH--
Confidence 333321 11 11 122233 333444444444455555544444332
Q ss_pred CccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 182 DLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR--GILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 182 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.-..- -.+.+.|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.++...+..
T Consensus 174 -la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 174 -LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred -HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 11111 25667788999999999999999875 3334456777888999999999999988776543
No 147
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=0.00015 Score=59.89 Aligned_cols=211 Identities=16% Similarity=0.127 Sum_probs=106.2
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHc-C--------CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCccc
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKEN-G--------LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVT 79 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 79 (257)
+...|..+.++|.+..+++-|.-.+..|... | -.++ .+-.-..-.....|.+++|+.+|.+...
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 3455667777777776666666555544321 0 0111 1112222233455666677666666543
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh----------CCC---
Q 041259 80 VVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPK----------RDM--- 146 (257)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~--- 146 (257)
|..|-..|-..|.+++|.++-+.=.+.. =..||.....-+...++.+.|++.|++... ..+
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 2233444555666777766655432221 123444444555555666666665554311 100
Q ss_pred ------CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcH
Q 041259 147 ------IPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDE 220 (257)
Q Consensus 147 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (257)
..|...|.......-..|+.+.|+.+|....+ |-.+++..+-+|+.++|-++-++-- |.
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~ 967 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DK 967 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cH
Confidence 11334455555555566666666666665432 3334444445555555554433221 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 221 ILCISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
....-|.+.|-..|++.+|..+|.+..
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 333346666677777777776666543
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.32 E-value=9.3e-07 Score=41.71 Aligned_cols=29 Identities=34% Similarity=0.721 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENG 40 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 40 (257)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.32 E-value=8.1e-05 Score=49.26 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=54.9
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 041259 120 ALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCG 199 (257)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 199 (257)
.+...+...|++++|.++|+.+...++. +..-|..|.-++...|++++|.+.|.......+. ++..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 3444455566666666666666555443 4555555666666666666666666666655432 5555566666666666
Q ss_pred cHHHHHHHHHHHHhC
Q 041259 200 HLQEARVLFHEMIGR 214 (257)
Q Consensus 200 ~~~~a~~~~~~~~~~ 214 (257)
+.+.|.+.|+..+..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666655543
No 150
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=0.00068 Score=53.20 Aligned_cols=197 Identities=17% Similarity=0.176 Sum_probs=120.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHH-----
Q 041259 13 YGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLI----- 87 (257)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll----- 87 (257)
...+....-+..+++.|++-+....+.. -+..-++....+|...|.+........+..+.|.. ...-|+.+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3456667777888888888888888754 44555666777888888888877777776665533 223333333
Q ss_pred --HHHHhcCcHHHHHHHHHhcccCCCCCCHHHH-------------------------HHHHHHHHhcCcHHHHHHHHHH
Q 041259 88 --DGLCKSGLVREAIDYFGRMPDFGLHPNVAVY-------------------------TALIDGLCKKNCIERARNLFDE 140 (257)
Q Consensus 88 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~ 140 (257)
.+|.+.++++.+...|++.......|+...- ..-...+.+.|++..|...|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3555667788888888776543323332111 1112344556677777777777
Q ss_pred hhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 141 MPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
+++..+. |...|....-+|.+.|.+..|+.-.+...+.. ++....|..-..++.-..++++|.+.|.+.++.
T Consensus 384 AIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 384 AIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666544 66667777777777777777666666555542 123344444444444555666676666666654
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.30 E-value=6.5e-05 Score=57.94 Aligned_cols=89 Identities=15% Similarity=0.080 Sum_probs=43.3
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKE 168 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (257)
.+...|+++.|+..|.++.+.. +.+...|..+..+|...|++++|+..++.+...... +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHH
Confidence 3344455555555555554432 233444444445555555555555555555444322 34444444555555555555
Q ss_pred HHHHHHHHHHc
Q 041259 169 ALNLKNRMTEV 179 (257)
Q Consensus 169 a~~~~~~~~~~ 179 (257)
|...|+...+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 152
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.29 E-value=0.00049 Score=58.05 Aligned_cols=214 Identities=13% Similarity=0.031 Sum_probs=130.6
Q ss_pred hhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHh
Q 041259 26 FEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGR 105 (257)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 105 (257)
...|...|-+..+.. +.=...|..|...|....+...|.+.|++..+.. ..+...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 555555555555432 2234567778888877777888888888887764 33667777888888888888888887333
Q ss_pred cccCCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCc
Q 041259 106 MPDFGLHPNVA--VYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDL 183 (257)
Q Consensus 106 ~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (257)
..+.. +.-.. .|....-.|.+.++...|..-|+...+.++. |...|..+..+|...|.+..|.++|.+..... |
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 22211 11111 2222333556677888888888888777666 77888888888888888888888888777653 3
Q ss_pred cHHHHHHH--HHHHHhcCcHHHHHHHHHHHHhC------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041259 184 DLNAYTSL--VWGLSRCGHLQEARVLFHEMIGR------GILPDEILCISLLKKHYERGNMDEAIELQNEM 246 (257)
Q Consensus 184 ~~~~~~~l--i~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 246 (257)
+ .+|... .-.-+..|++.+|...+...... +...-..++..+...+...|-..+|..++++-
T Consensus 628 ~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 628 L-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred H-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 2 222222 22234567788888777766542 11112334444444444445445555554443
No 153
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.29 E-value=6.7e-05 Score=61.22 Aligned_cols=167 Identities=18% Similarity=0.185 Sum_probs=78.3
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHH
Q 041259 18 WGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVR 97 (257)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (257)
.+....+.|.+|+.+++.+.... ....-|..+...|+..|+++.|.++|.+. ..++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 33444555556666665555542 22333455555666666666666655432 12344555666666666
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHH
Q 041259 98 EAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMT 177 (257)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (257)
.|.++-++.... ......|-+-..-.-+.|++.+|.+++-.+.. |+ ..|..|-+.|..+..+++..+-.
T Consensus 809 da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 666655544321 22333343333444445555555554433322 12 12344444555554444443321
Q ss_pred HcCCCccHHHHHHHHHHHHhcCcHHHHHHHHH
Q 041259 178 EVGVDLDLNAYTSLVWGLSRCGHLQEARVLFH 209 (257)
Q Consensus 178 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (257)
-. .-..|...+..-+-..|+...|+.-|-
T Consensus 878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 878 GD---HLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hh---hhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 11 112334444455555555555555443
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.28 E-value=3e-05 Score=51.26 Aligned_cols=99 Identities=11% Similarity=-0.061 Sum_probs=76.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 041259 44 NTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALID 123 (257)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (257)
+......+...+...|++++|.++|+-+....+ -+..-|..|.-++-..|++++|+..|....... +.+...+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 344455566667788899999999988877642 256667778888888899999999998887766 466777778888
Q ss_pred HHHhcCcHHHHHHHHHHhhhC
Q 041259 124 GLCKKNCIERARNLFDEMPKR 144 (257)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~ 144 (257)
++...|+.+.|++.|+.....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888899999999888877655
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.25 E-value=0.00071 Score=49.24 Aligned_cols=195 Identities=12% Similarity=0.108 Sum_probs=113.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHH---HHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 041259 13 YGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVIC---TTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDG 89 (257)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (257)
+-.....+.+.|++++|.+.|+.+...- |-+.... -.++.++.+.+++++|...+++..+..+.-....+...+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 3345555677899999999999998863 2223322 45677889999999999999999886433222333333333
Q ss_pred HHhcCcHHHHHHHHHhcccCCCCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccc
Q 041259 90 LCKSGLVREAIDYFGRMPDFGLHPN-----VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHE 164 (257)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (257)
.+........+.-+.........++ ...+..++.-|-...-..+|...+..+... -...-..+.+.|.+.|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~----la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR----LAKYELSVAEYYTKRG 189 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcC
Confidence 3210000000000000000000000 022334444444444455555544444332 1112225567788889
Q ss_pred CHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 041259 165 SFKEALNLKNRMTEV--GVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMI 212 (257)
Q Consensus 165 ~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 212 (257)
.+..|..-++.+.+. +.+........++.+|...|..++|.++...+.
T Consensus 190 ~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 190 AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 999999988888874 223355677788899999999999988776554
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.24 E-value=7.2e-05 Score=57.71 Aligned_cols=102 Identities=13% Similarity=0.088 Sum_probs=84.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc
Q 041259 16 IIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGL 95 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (257)
-...+...|++++|++.|+++.+.. +.+...|..+..++...|++++|+..+++.+... +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3456678899999999999999875 5677888899999999999999999999999874 3367788899999999999
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHH
Q 041259 96 VREAIDYFGRMPDFGLHPNVAVYTAL 121 (257)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (257)
+++|...|++..+.. |+.......
T Consensus 86 ~~eA~~~~~~al~l~--P~~~~~~~~ 109 (356)
T PLN03088 86 YQTAKAALEKGASLA--PGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 999999999998764 444433333
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.22 E-value=0.00031 Score=48.31 Aligned_cols=86 Identities=12% Similarity=0.053 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 041259 82 TFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPN--VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDG 159 (257)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (257)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++....... +...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 445555555566666666666666554321111 234555555566666666666666655554322 34444444455
Q ss_pred HHcccCHHH
Q 041259 160 YLKHESFKE 168 (257)
Q Consensus 160 ~~~~~~~~~ 168 (257)
+...|+...
T Consensus 116 ~~~~g~~~~ 124 (172)
T PRK02603 116 YHKRGEKAE 124 (172)
T ss_pred HHHcCChHh
Confidence 555444333
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.21 E-value=0.00083 Score=50.22 Aligned_cols=129 Identities=16% Similarity=0.244 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHh----cCCccc--H
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKEN----GLTA-NTVICTTLMDAYFKAGEPSEALSLLDEMLD----SRIEVT--V 80 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~ 80 (257)
.|......|...|++++|.+.|...... +-+. -...|.....+|.+ .++++|+..+++... .| .|+ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G-~~~~aA 114 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG-RFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence 4555555666666666666666655321 1000 11223333333322 255555555555432 12 111 2
Q ss_pred HHHHHHHHHHHhc-CcHHHHHHHHHhccc----CCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 041259 81 VTFCVLIDGLCKS-GLVREAIDYFGRMPD----FGLH-PNVAVYTALIDGLCKKNCIERARNLFDEMP 142 (257)
Q Consensus 81 ~~~~~ll~~~~~~-~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (257)
..+..+...|... |+++.|.+.|++..+ .+.+ .-...+..+...+.+.|++++|.++|+++.
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2344444445444 555555555554422 1100 001233334444555555555555555443
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.20 E-value=0.00068 Score=54.86 Aligned_cols=143 Identities=11% Similarity=0.032 Sum_probs=92.3
Q ss_pred CcccHHHHHHHHHHHHhc-----CcHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHhc--------CcHHHHHHHHHHh
Q 041259 76 IEVTVVTFCVLIDGLCKS-----GLVREAIDYFGRMPDFGLHPN-VAVYTALIDGLCKK--------NCIERARNLFDEM 141 (257)
Q Consensus 76 ~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~ 141 (257)
.+.+...|...+++.... ++...|..+|++..+.. |+ ...|..+..++... .++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 455667777777665432 23667888888887763 44 33444433333221 1233444444443
Q ss_pred hhC-CCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcH
Q 041259 142 PKR-DMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDE 220 (257)
Q Consensus 142 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (257)
... ....+...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++.... .|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 332 122345677777666677889999999999988865 57788888888999999999999999888774 4555
Q ss_pred HHHH
Q 041259 221 ILCI 224 (257)
Q Consensus 221 ~~~~ 224 (257)
.+|.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 5544
No 160
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.0013 Score=55.97 Aligned_cols=112 Identities=15% Similarity=0.131 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLC 91 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (257)
.|..+..+-.+.|...+|.+-|-+. .|+..|...+....+.|.+++-.+++....+...+|... ..|+-+|+
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyA 1177 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYA 1177 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHH
Confidence 4555555555555555554433221 234445555555555566655555555554443333322 34555555
Q ss_pred hcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 041259 92 KSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLF 138 (257)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 138 (257)
+.+++.+.++++. .|+......+.+-|...+.++.|.-+|
T Consensus 1178 kt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 5555554443331 244444444444444444444444433
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.18 E-value=0.00024 Score=48.89 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCccc--HHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHH
Q 041259 45 TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVT--VVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALI 122 (257)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (257)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34566677777788888888888888876433222 3567777888888888888888888877653 33455666666
Q ss_pred HHHHhcCcHHHHH
Q 041259 123 DGLCKKNCIERAR 135 (257)
Q Consensus 123 ~~~~~~~~~~~a~ 135 (257)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6776666655544
No 162
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.15 E-value=0.0032 Score=52.68 Aligned_cols=198 Identities=12% Similarity=0.076 Sum_probs=130.3
Q ss_pred HHHHHHH--HhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 041259 14 GTIIWGL--CIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLC 91 (257)
Q Consensus 14 ~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (257)
..++.++ .+.|+.++|..+++.....+. .|..|...+-.+|.+.++.++|..+|++.... -|+..-...+..+|.
T Consensus 45 a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayv 121 (932)
T KOG2053|consen 45 AKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHH
Confidence 3444444 588999999999988876653 48889999999999999999999999999876 456777778888888
Q ss_pred hcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC----------cHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHH
Q 041259 92 KSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKN----------CIERARNLFDEMPKRD-MIPDTTAYTALIDGY 160 (257)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 160 (257)
+.+++.+-.++--++.+. .+.+...+=++++.....- -..-|.+.++.+.+.+ ..-+..-........
T Consensus 122 R~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL 200 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLIL 200 (932)
T ss_pred HHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHH
Confidence 887766543333333221 1223333334444433211 1234556666665554 222222233333445
Q ss_pred HcccCHHHHHHHHH-HHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC
Q 041259 161 LKHESFKEALNLKN-RMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRG 215 (257)
Q Consensus 161 ~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 215 (257)
...|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++...|
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 67889999999984 44443333344555566777888899999999999998875
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.15 E-value=0.00016 Score=49.58 Aligned_cols=93 Identities=12% Similarity=-0.022 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 041259 117 VYTALIDGLCKKNCIERARNLFDEMPKRDMIP--DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWG 194 (257)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 194 (257)
.+..+...+...|++++|...|+........+ ...++..+...+...|++++|...++....... ....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHH
Confidence 44445555555566666666666554432221 123555555666666666666666666554421 123334444444
Q ss_pred HH-------hcCcHHHHHHHHHH
Q 041259 195 LS-------RCGHLQEARVLFHE 210 (257)
Q Consensus 195 ~~-------~~~~~~~a~~~~~~ 210 (257)
+. ..|+++.|...+++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHH
Confidence 44 55666544444443
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.14 E-value=0.00012 Score=50.24 Aligned_cols=64 Identities=11% Similarity=0.011 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhC
Q 041259 81 VTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHP--NVAVYTALIDGLCKKNCIERARNLFDEMPKR 144 (257)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (257)
..|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|...++.....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444444445555555555555543321111 1224445555555555555555555555443
No 165
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.13 E-value=0.0024 Score=50.52 Aligned_cols=186 Identities=15% Similarity=0.111 Sum_probs=131.0
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHH
Q 041259 27 EDSKLLLSEMKENGLTANTVICTTLMDAYFKA---GEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYF 103 (257)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 103 (257)
+++..+++.....-..-+..+|..+...--.. ...+.....+++++..-..--..+|..+++...+..-++.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 44555555554432222333443333221111 135667777777765432223467888888888888899999999
Q ss_pred HhcccCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC
Q 041259 104 GRMPDFGLHP-NVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVD 182 (257)
Q Consensus 104 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (257)
.++.+.+..+ ++.++++++..+| .++.+-|.++|+--.+.-.. ++.--...+..+...++-..+..+|++....++.
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 9998887766 6777788887666 47789999999976655222 4444567777888899999999999999988655
Q ss_pred cc--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 183 LD--LNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 183 ~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
|+ ...|..++..=+.-|+...+.++-+++...
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 54 478999999999999999999988877653
No 166
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.002 Score=50.76 Aligned_cols=184 Identities=14% Similarity=0.021 Sum_probs=127.2
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHH-------HHHHHHhcCChHHHHHHHHHHHhcCCcccHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTT-------LMDAYFKAGEPSEALSLLDEMLDSRIEVTVV 81 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (257)
++.-++....++...|.+.++........+.|.. ...-|+. +..++.+.++++.++..|++.+.....|+..
T Consensus 256 ~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l 334 (539)
T KOG0548|consen 256 DITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL 334 (539)
T ss_pred hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH
Confidence 3444566667778888888887777777666522 2222333 3335566678888888888876543333322
Q ss_pred H-------------------------HHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 041259 82 T-------------------------FCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARN 136 (257)
Q Consensus 82 ~-------------------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (257)
. ...-.+.+.+.|++..|...|.+++... +-|...|.....+|.+.|.+..|++
T Consensus 335 s~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 335 SKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALK 413 (539)
T ss_pred HHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHH
Confidence 1 1222455677899999999999998876 6788899999999999999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 041259 137 LFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSR 197 (257)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 197 (257)
=-+...+.++. ....|.-=..++....++++|.+.|++..+.. |+..-+..-+.-|..
T Consensus 414 Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 414 DAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 88887776433 45556655666677789999999999988865 444444444444443
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.09 E-value=0.00065 Score=54.97 Aligned_cols=140 Identities=14% Similarity=0.048 Sum_probs=90.2
Q ss_pred cCCCccHHHHHHHHHHHHhc--C---ChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc--------CcHHHHHHHHHh
Q 041259 39 NGLTANTVICTTLMDAYFKA--G---EPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKS--------GLVREAIDYFGR 105 (257)
Q Consensus 39 ~~~~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~~~a~~~~~~ 105 (257)
...+.+...|...+++.... + +...|..+|++..+.... ....|..+..++... .+...+.+..++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 33466777777777764332 2 256788888888876321 334444433333221 123444555544
Q ss_pred cccC-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCC
Q 041259 106 MPDF-GLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGV 181 (257)
Q Consensus 106 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (257)
.... ..+.+...|.++.......|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....+.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3332 123455677777666667889999999999888765 5777888888888889999999998888877543
No 168
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=0.00034 Score=57.95 Aligned_cols=209 Identities=12% Similarity=0.088 Sum_probs=133.4
Q ss_pred ChhhHHHHHH--HHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-C--------Cc
Q 041259 9 DLPLYGTIIW--GLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS-R--------IE 77 (257)
Q Consensus 9 ~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~ 77 (257)
|..|-..+++ .|..-|+.+.|.+-.+-++ +...|..+..+|.+..+++-|.-.+-.|... | ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3344444443 3456688888877665544 3567899999998888877776665554321 1 11
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 041259 78 VTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALI 157 (257)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (257)
|+ ..-....-.....|.+++|+.+|.+.++ |..|=..|-..|.|++|.++-+.--.-.. ..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 21 2222333445567889999999988765 34455677788999999888765433322 34677777
Q ss_pred HHHHcccCHHHHHHHHHHH----------HHcC---------CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 041259 158 DGYLKHESFKEALNLKNRM----------TEVG---------VDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILP 218 (257)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~----------~~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 218 (257)
..+-..++.+.|++.|++. .... -.-|...|......+-..|+.+.|+.++....+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 7777788888888877753 1111 012455667777777778888888888776654
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041259 219 DEILCISLLKKHYERGNMDEAIELQNE 245 (257)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (257)
|.++++..+-.|+.++|.++-++
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~e 963 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEE 963 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHh
Confidence 44566666667777777766554
No 169
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.09 E-value=0.00037 Score=58.68 Aligned_cols=165 Identities=10% Similarity=-0.001 Sum_probs=122.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CcccHHHHHHHHHH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSR-IEVTVVTFCVLIDG 89 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~ 89 (257)
..|..|-..|+...+..+|...|+...+.. +-+...+..+...|++..+++.|..+.-..-+.. ...-...|-...-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 457888888888788899999999988765 4567788899999999999999999843332221 01112334445566
Q ss_pred HHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHH
Q 041259 90 LCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEA 169 (257)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (257)
|...++...+...|+...+.. +.|...|..+..+|.+.|++..|.++|.+.....+. +...--...-.-+..|.+.++
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHH
Confidence 778899999999999988765 568889999999999999999999999988775432 222212222334678999999
Q ss_pred HHHHHHHHH
Q 041259 170 LNLKNRMTE 178 (257)
Q Consensus 170 ~~~~~~~~~ 178 (257)
...+.....
T Consensus 650 ld~l~~ii~ 658 (1238)
T KOG1127|consen 650 LDALGLIIY 658 (1238)
T ss_pred HHHHHHHHH
Confidence 988887654
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00018 Score=52.31 Aligned_cols=100 Identities=23% Similarity=0.225 Sum_probs=67.2
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKE 168 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (257)
-+.+.+++.+|+..|.+.+... +-|.+.|..-..+|.+.|.++.|++=.+..+..+.. ...+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 3456677777777777777654 445566666777777777777777777666665433 45677777777777777777
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHH
Q 041259 169 ALNLKNRMTEVGVDLDLNAYTSLV 192 (257)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li 192 (257)
|.+.|++..+. .|+-.+|..=+
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHH
Confidence 77777776663 45555554433
No 171
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.05 E-value=7.1e-05 Score=52.01 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=66.2
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc-----------
Q 041259 30 KLLLSEMKENGLTANTVICTTLMDAYFKA-----GEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKS----------- 93 (257)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------- 93 (257)
...|+..... ..+..+|..++..|.+. |..+-....+..|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 4445554322 35566666666666543 45566666666677777777777777777665431
Q ss_pred -----CcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCc
Q 041259 94 -----GLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNC 130 (257)
Q Consensus 94 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (257)
.+.+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2356688888888888888888888888888877654
No 172
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0026 Score=47.80 Aligned_cols=185 Identities=12% Similarity=0.080 Sum_probs=117.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcH
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLV 96 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (257)
+.-+....++..|..+++--...+-.-...+-..+..++...|++++|...+.-+.+.. .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 45566778899999988876654433333444556778888999999999998887753 45666677777777777888
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHH
Q 041259 97 REAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRM 176 (257)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (257)
.+|..+-....+ +.-.-..+.....+.++-++-..+-+.+... ..--.++.......-.+.+|.+++.+.
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888776543 2233344555555666666655555444332 122233444444555677888888877
Q ss_pred HHcCCCccHHHHHHH-HHHHHhcCcHHHHHHHHHHHHhC
Q 041259 177 TEVGVDLDLNAYTSL-VWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 177 ~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
...+ |.-...+.. .-+|.+..-++-+.+++.-.++.
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 7653 333444333 34555666677777777766654
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.04 E-value=3.1e-05 Score=44.12 Aligned_cols=52 Identities=23% Similarity=0.371 Sum_probs=24.7
Q ss_pred hcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041259 22 IESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS 74 (257)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (257)
+.|++++|.++|+.+.... |-+...+..+..++.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555554442 234444444555555555555555555555443
No 174
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0022 Score=46.14 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHH-----HH
Q 041259 82 TFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYT-----AL 156 (257)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l 156 (257)
+.+.++.++...+.+.-....+.+.++..-+.++...+.|.+.-.+.|+.+.|...|++..+..-..+..+.+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4466777888889999999999999887656678888899999999999999999999877653333433333 33
Q ss_pred HHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHH
Q 041259 157 IDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEIL 222 (257)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (257)
...|.-.+++..|...+.+....+.. ++...|.-.-+....|+..+|.+.++.++.. .|...+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 44566778899999999888877544 6666777666777889999999999999986 344433
No 175
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.00 E-value=0.0022 Score=45.45 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=30.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENG--LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS 74 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (257)
...+...|++.+|.+.|+.+...- -+.-....-.++.++.+.|+++.|...++++.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455666666666666666541 1122233445555666666666666666666554
No 176
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.00 E-value=0.00085 Score=55.13 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=68.0
Q ss_pred HHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcH
Q 041259 122 IDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHL 201 (257)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 201 (257)
+.+......|.+|+.+++.+..... -..-|..+...|...|+++.|.++|.+.- .++-.|..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3444556777888888887766543 23456677778888888888888776432 345566777888888
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 041259 202 QEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQ 243 (257)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (257)
++|.++-.+... .......|.+-..-.-++|++.+|.+++
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 888777655432 2334445554444455555555555443
No 177
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0013 Score=55.89 Aligned_cols=181 Identities=14% Similarity=0.190 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 041259 46 VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGL 125 (257)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (257)
..|..+..+-...|...+|++-|-+. .|+..|.-+++...+.|.+++..+++....+..-.|... +.|+-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 45666666666666666665544222 155666677777777777777776666655544444443 3566667
Q ss_pred HhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHc--------------------CCCccH
Q 041259 126 CKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEV--------------------GVDLDL 185 (257)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~ 185 (257)
++.++..+..+++. -|+......+..-|...+.++.|.-+|...... ...-+.
T Consensus 1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 77666665544431 123333333444444444444443333321100 001133
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041259 186 NAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEM 246 (257)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 246 (257)
.+|..+-.+|...+.+.-| +|....+.....-...++..|-..|-+++.+.+++.-
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 4444444444444433222 2222223334445666777777788888777776643
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.0003 Score=51.27 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=60.2
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHH
Q 041259 54 AYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIER 133 (257)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (257)
-+.+.+++.+|+..|.+.++.. +-+..-|..-..+|.+.|.++.|.+-.+..+... +....+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3456667777777777776652 2255556666677777777777766666665543 2334566667777777777777
Q ss_pred HHHHHHHhhhCCCCCCHHHHHH
Q 041259 134 ARNLFDEMPKRDMIPDTTAYTA 155 (257)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~ 155 (257)
|.+.|+..++. .|+-.+|-.
T Consensus 168 A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHH
Confidence 77777666654 344444433
No 179
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.97 E-value=0.00057 Score=47.66 Aligned_cols=104 Identities=25% Similarity=0.300 Sum_probs=65.9
Q ss_pred ccHHHHHHHHHHHHh-----cCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHH
Q 041259 78 VTVVTFCVLIDGLCK-----SGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTA 152 (257)
Q Consensus 78 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (257)
.+..+|..++..+.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- |.. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-F 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-H
Confidence 366777777777654 35566666667777777777777777777766543 2211 110 1
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCc
Q 041259 153 YTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGH 200 (257)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 200 (257)
+.++...| -.+-+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 108 fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111111 23445678888888888888899999888888887765
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.97 E-value=0.0036 Score=46.83 Aligned_cols=195 Identities=13% Similarity=0.174 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc----CCcc-cHHHHHHHHHHHHhcCcHHHHHHHHHhcc----cCCCCCC--H
Q 041259 47 ICTTLMDAYFKAGEPSEALSLLDEMLDS----RIEV-TVVTFCVLIDGLCKSGLVREAIDYFGRMP----DFGLHPN--V 115 (257)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~--~ 115 (257)
.|......|...+++++|.+.|.+.... +-+. -...|.....+|.+. ++++|...+++.. +.| .|+ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA 114 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence 4555666777778888888888766432 1111 123344444555444 7777777776663 233 222 2
Q ss_pred HHHHHHHHHHHhc-CcHHHHHHHHHHhhhC----CCCC--CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCC-----Cc
Q 041259 116 AVYTALIDGLCKK-NCIERARNLFDEMPKR----DMIP--DTTAYTALIDGYLKHESFKEALNLKNRMTEVGV-----DL 183 (257)
Q Consensus 116 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~ 183 (257)
..+..+...|... |++++|.+.|++.... + .+ -..++..+...+.+.|++++|.++|++...... +.
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 3556666777777 8888888888776432 2 11 134556677778888888888888888776432 22
Q ss_pred cHH-HHHHHHHHHHhcCcHHHHHHHHHHHHhC--CCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHH
Q 041259 184 DLN-AYTSLVWGLSRCGHLQEARVLFHEMIGR--GILPDEI--LCISLLKKHYERGNMDEAIELQNE 245 (257)
Q Consensus 184 ~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~ 245 (257)
+.. .+-..+-++...|++..|...+++.... ++..+.. ....|+.+ ++.|+.+...+.+.+
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A-~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA-YEEGDVEAFTEAVAE 259 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH-HHTT-CCCHHHHCHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH-HHhCCHHHHHHHHHH
Confidence 222 2333444666678888888888888754 3333333 22334443 345666655444433
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.0014 Score=48.02 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhCCCCCcHHHHHH
Q 041259 149 DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCG---HLQEARVLFHEMIGRGILPDEILCIS 225 (257)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (257)
|...|..|..+|...|+.+.|..-|....+.. .+++..+..+..++..+. ...++..+|++++... +-+......
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 56666666666666666666666666666542 224455544444443322 3455666666666542 224445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 226 LLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
|...+...|++.+|...|+.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 5566666666666666666666543
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.95 E-value=9.4e-05 Score=42.11 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=36.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHH
Q 041259 56 FKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYT 119 (257)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (257)
...|++++|+++|+++.... +-+...+..+..+|.+.|++++|..+++++... .|+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence 34566777777777766653 225556666677777777777777777776654 35533333
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.93 E-value=0.0012 Score=42.06 Aligned_cols=107 Identities=18% Similarity=0.045 Sum_probs=67.2
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC--ccHHHHHHHHHHHH
Q 041259 121 LIDGLCKKNCIERARNLFDEMPKRDMIPD--TTAYTALIDGYLKHESFKEALNLKNRMTEVGVD--LDLNAYTSLVWGLS 196 (257)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~ 196 (257)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++........ .+......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34556677888888888888877776543 345556667777788888888888877765321 01222233344666
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041259 197 RCGHLQEARVLFHEMIGRGILPDEILCISLLKKHY 231 (257)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (257)
..|+.++|.+.+-..... +...|..-|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 778888888877665542 3335555555443
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.91 E-value=0.0018 Score=41.35 Aligned_cols=92 Identities=21% Similarity=0.245 Sum_probs=48.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCc--ccHHHHHHHHHHHH
Q 041259 16 IIWGLCIESKFEDSKLLLSEMKENGLTAN--TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIE--VTVVTFCVLIDGLC 91 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~ 91 (257)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.++++....... .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455556666666666666666654332 224445555666666666666666666554211 01122222333455
Q ss_pred hcCcHHHHHHHHHhcc
Q 041259 92 KSGLVREAIDYFGRMP 107 (257)
Q Consensus 92 ~~~~~~~a~~~~~~~~ 107 (257)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5666666666655443
No 185
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.88 E-value=0.0054 Score=45.97 Aligned_cols=227 Identities=14% Similarity=0.109 Sum_probs=150.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHH-HHHHHHHHhc
Q 041259 15 TIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTF-CVLIDGLCKS 93 (257)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~ 93 (257)
-+-..+...|++..|+.-|....+-+ +.+-.++-.-...|...|+...|+.=+.+.++. +||-..- ..-...+.+.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence 35556666778888888777777632 222223333345677778888888888888765 5553322 2234567788
Q ss_pred CcHHHHHHHHHhcccCCCCCCH----HHH------------HHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 041259 94 GLVREAIDYFGRMPDFGLHPNV----AVY------------TALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALI 157 (257)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~----~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (257)
|.+++|..=|....+.. |+. ..+ ...+..+...|+...|+.....+++..+- +...|..-.
T Consensus 120 Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Ra 196 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARA 196 (504)
T ss_pred ccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHH
Confidence 99999999888887653 321 111 22344556678889999999888887544 777777888
Q ss_pred HHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHH----HHH---H----
Q 041259 158 DGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEIL----CIS---L---- 226 (257)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~---l---- 226 (257)
.+|...|++..|+.=++...+..- -+..++--+-..+...|+.+.++...++.++. .||... |.. +
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHH
Confidence 889999999999887777766543 35666667777788889988888888888774 555432 211 1
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 227 --LKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 227 --~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
+....+.++|.++++..+..++..
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~e 299 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNE 299 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 112334567777777777666543
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.87 E-value=0.00013 Score=41.68 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAG-EPSEALSLLDEMLD 73 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 73 (257)
..|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344445555555555555555555555443 234444555555555555 45555555554443
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.0028 Score=45.60 Aligned_cols=138 Identities=13% Similarity=0.019 Sum_probs=104.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHH-----HHH
Q 041259 49 TTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTA-----LID 123 (257)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~ 123 (257)
+.++.++.-.+.+.-....+.+.++...+.++.....+.+.-.+.||.+.|...|++..+..-..+..+++. ...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 556666667788888999999999877677888889999999999999999999997765433344444433 334
Q ss_pred HHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHH
Q 041259 124 GLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYT 189 (257)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (257)
.|.-.+++..|...+.++...+.. ++...|.-.-+..-.|+..+|.+.++.+.+.- |...+-+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 566678899999999999887655 66666665555666799999999999998864 4444444
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.84 E-value=0.001 Score=48.86 Aligned_cols=88 Identities=13% Similarity=0.005 Sum_probs=38.6
Q ss_pred HhcCcHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCcH
Q 041259 126 CKKNCIERARNLFDEMPKRDMIPD--TTAYTALIDGYLKHESFKEALNLKNRMTEVGV--DLDLNAYTSLVWGLSRCGHL 201 (257)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~ 201 (257)
.+.|++++|...|+.+.+..+... ...+..+..+|...|++++|...|+.+.+... +.....+-.+..++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555444322210 13444444555555555555555555543211 01122333334444445555
Q ss_pred HHHHHHHHHHHh
Q 041259 202 QEARVLFHEMIG 213 (257)
Q Consensus 202 ~~a~~~~~~~~~ 213 (257)
++|..+++.+.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.84 E-value=0.00017 Score=40.62 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=19.0
Q ss_pred HcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 041259 161 LKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEM 211 (257)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 211 (257)
...|++++|...|+.+.+..+. +...+..+..++...|++++|...|+++
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334444444444444333211 3333333344444444444444444433
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.83 E-value=0.00025 Score=39.89 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=49.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 191 LVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
+...+...|++++|...|+++++.. +-+...+..+..++...|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999874 336778888999999999999999999998754
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0023 Score=46.95 Aligned_cols=101 Identities=10% Similarity=0.060 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc---cCHHHHHHHHHHHHHcCCCccHHHH
Q 041259 112 HPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKH---ESFKEALNLKNRMTEVGVDLDLNAY 188 (257)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (257)
+-|...|..|...|...|+.+.|..-|....+...+ +...+..+..++..+ ....++..+|+++...... |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 567778888888888888888888888887766443 666666666655432 2455777888888876543 67777
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 189 TSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 189 ~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
..+...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 77778888888888888888888876
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.81 E-value=0.00017 Score=41.13 Aligned_cols=60 Identities=22% Similarity=0.345 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-cHHHHHHHHHHHH
Q 041259 152 AYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCG-HLQEARVLFHEMI 212 (257)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~ 212 (257)
+|..+...+...|++++|+..|++..+.... +...|..+..++...| ++++|.+.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444444444444444444444444443221 3344444444444444 3444444444433
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.76 E-value=0.0051 Score=41.95 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=62.3
Q ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC-CCHHHHHH
Q 041259 77 EVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMI-PDTTAYTA 155 (257)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 155 (257)
.|++..-..|..++...|+..+|...|++....-+-.|......+.++....+++..|...++++.+.... -++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444555555566666666666655554333344555555555555556666666655555443211 01223334
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHH
Q 041259 156 LIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEAR 205 (257)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 205 (257)
+.+.+...|.+.+|+.-|+..... .|+...-......+.+.|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 455555556666565555555553 233333223333344455444433
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.75 E-value=0.0065 Score=43.05 Aligned_cols=181 Identities=20% Similarity=0.189 Sum_probs=103.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC--cccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCH--HHHHHHHHH
Q 041259 49 TTLMDAYFKAGEPSEALSLLDEMLDSRI--EVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNV--AVYTALIDG 124 (257)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~ 124 (257)
-.....+...|++.+|...|+++..... +--....-.++.++.+.|+++.|...++++.+.- |+. ..+...+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHHH
Confidence 3444556788999999999999987522 2234556677888999999999999999987642 332 222222322
Q ss_pred HHhcCcHHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcH
Q 041259 125 LCKKNCIERARNLFDEMPKRDMIP---DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHL 201 (257)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 201 (257)
.+......... ....+... -...+..++.-|=...-..+|...+..+.+. .. ..--.+.+.|.+.|.+
T Consensus 87 ~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 87 LSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHHHHHHHHHHCTT-H
T ss_pred HHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHcccH
Confidence 22211111110 00000000 1124455555555666667776666655442 11 1122356788999999
Q ss_pred HHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCCHHHHH
Q 041259 202 QEARVLFHEMIGR--GILPDEILCISLLKKHYERGNMDEAI 240 (257)
Q Consensus 202 ~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~ 240 (257)
..|..-++.+++. +..........++.++.+.|..+.+.
T Consensus 158 ~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 158 KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999876 11112345677888999999888544
No 195
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.71 E-value=0.0023 Score=41.26 Aligned_cols=98 Identities=12% Similarity=0.084 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 041259 114 NVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVW 193 (257)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 193 (257)
|..++.+++.++++.|+.+....+++..-.-++.... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~-----------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKK-----------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcc-----------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 3455666666777777776666666554221111000 0000 1112335677788888888
Q ss_pred HHHhcCcHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHH
Q 041259 194 GLSRCGHLQEARVLFHEMIGR-GILPDEILCISLLKKHY 231 (257)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 231 (257)
+|+..|++..|.++++...+. +++.+..+|..|++-..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888888888888777654 66666777777777444
No 196
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.70 E-value=0.00047 Score=46.03 Aligned_cols=72 Identities=25% Similarity=0.381 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcc-----cCCCCCCHHHH
Q 041259 46 VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMP-----DFGLHPNVAVY 118 (257)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 118 (257)
.+...++..+...|++++|..+++.+.... +.+...|..+|.++...|+...|.++|+++. +.|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 455667777778888888888888888763 4477788888888888888888888887773 45777776653
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.66 E-value=0.0076 Score=41.16 Aligned_cols=131 Identities=15% Similarity=0.121 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC-ccHHHHHH
Q 041259 112 HPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVD-LDLNAYTS 190 (257)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 190 (257)
-|++..--.|..+..+.|+..+|...|++...--..-|......+.++....+++..|...++.+-+.... -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 57777777889999999999999999999887666678888889999999999999999999998875421 13345566
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041259 191 LVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQN 244 (257)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 244 (257)
+.+.+...|++.+|+..|+..... -|+...-......+.+.|+.+++..-+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 788899999999999999999885 4565544444555667776665544333
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.65 E-value=0.0036 Score=46.10 Aligned_cols=100 Identities=14% Similarity=0.042 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC--CCCcHHHHHH
Q 041259 150 TTAYTALIDGYLKHESFKEALNLKNRMTEVGVDL--DLNAYTSLVWGLSRCGHLQEARVLFHEMIGRG--ILPDEILCIS 225 (257)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 225 (257)
...|...+..+.+.|++++|...|+.+.+..+.. .+..+-.+..+|...|++++|...|+.+.+.- .+.....+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3455555555567799999999999998864321 13577888999999999999999999998751 1223455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 226 LLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
+...+...|+.++|.++|+.+++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777888999999999999988764
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.60 E-value=0.00079 Score=44.93 Aligned_cols=56 Identities=27% Similarity=0.378 Sum_probs=25.9
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 041259 155 ALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEM 211 (257)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 211 (257)
.++..+...|++++|..+.+.+....+ .+...|..+|.++...|+...|.++|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444445555555555555544432 24445555555555555555555555444
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.59 E-value=0.0015 Score=49.95 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=84.4
Q ss_pred HHHHhcCcHHHHHHHHHHh----hhCCC-CCCHHHHHHHHHHHHcccCHHHHHHHHHHHH----HcCCC-ccHHHHHHHH
Q 041259 123 DGLCKKNCIERARNLFDEM----PKRDM-IPDTTAYTALIDGYLKHESFKEALNLKNRMT----EVGVD-LDLNAYTSLV 192 (257)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~li 192 (257)
..|.-.|+++.|+...+.- .+.|- ...-..+..+..++.-.|+++.|.+.|+.-. +.|-+ ......-+|.
T Consensus 203 NTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLg 282 (639)
T KOG1130|consen 203 NTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLG 282 (639)
T ss_pred ceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhh
Confidence 3344457788877654432 12221 1123567778888888899999988877543 22211 2344556677
Q ss_pred HHHHhcCcHHHHHHHHHHHHhC-----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 193 WGLSRCGHLQEARVLFHEMIGR-----GILPDEILCISLLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
..|.-..++++|+.++.+-+.- ...-....+.+|..+|...|..++|+.+...-++..
T Consensus 283 Ntytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 283 NTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7888888899999888765431 112245678889999999999999998887766543
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=97.57 E-value=0.0095 Score=39.93 Aligned_cols=89 Identities=12% Similarity=0.024 Sum_probs=57.4
Q ss_pred HHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHH
Q 041259 123 DGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQ 202 (257)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (257)
.-+...|++++|..+|.-+...++. +..-+..|..++...+++++|...|......+.. |+..+-....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHH
Confidence 3345567777777777776665544 5555666666666777777777777665554332 4444555666777777777
Q ss_pred HHHHHHHHHHh
Q 041259 203 EARVLFHEMIG 213 (257)
Q Consensus 203 ~a~~~~~~~~~ 213 (257)
.|...|.....
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777776665
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.56 E-value=0.001 Score=38.39 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=36.5
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041259 18 WGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS 74 (257)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (257)
..+.+.+++++|.++++.+...+ |.+...+.....++...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566677777777777766653 445556666666666777777777777766654
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.50 E-value=0.027 Score=43.39 Aligned_cols=170 Identities=11% Similarity=0.040 Sum_probs=97.6
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CcccHHHHHHHHHHHHh---cCcHHHHHHHHHhcccCCCCCCHH
Q 041259 43 ANTVICTTLMDAYFKAGEPSEALSLLDEMLDSR---IEVTVVTFCVLIDGLCK---SGLVREAIDYFGRMPDFGLHPNVA 116 (257)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 116 (257)
.+..+...++-+|....+++..+++++.+.... +.-+...-....-++.+ .|+.++|++++..+....-.++..
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 344444566666888888888888888886541 11122323344455555 788888888887754444467777
Q ss_pred HHHHHHHHHHh---------cCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccC----HHHHHHHH---H-HHHHc
Q 041259 117 VYTALIDGLCK---------KNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHES----FKEALNLK---N-RMTEV 179 (257)
Q Consensus 117 ~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~---~-~~~~~ 179 (257)
+|..+.+.|-. ....++|...|.+.-+.. |+..+--.++..+...|. ..+..++- . .+.+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 77776665532 234677887777765543 333222222222222221 11222222 1 12223
Q ss_pred CC---CccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 180 GV---DLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 180 ~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
|. ..+--.+..++.++.-.|+.++|.+..++|.+.
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 32 234555677888888899999999999998876
No 204
>PRK15331 chaperone protein SicA; Provisional
Probab=97.49 E-value=0.013 Score=39.38 Aligned_cols=90 Identities=14% Similarity=-0.014 Sum_probs=61.1
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCH
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESF 166 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (257)
..-+...|++++|..+|.-+...+ +-+..-|..|..++-..+++++|...|......+.. |+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCH
Confidence 334456688888888887776554 345555666777777778888888887765544432 444555666777778888
Q ss_pred HHHHHHHHHHHH
Q 041259 167 KEALNLKNRMTE 178 (257)
Q Consensus 167 ~~a~~~~~~~~~ 178 (257)
+.|...|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888887777766
No 205
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.48 E-value=0.0056 Score=39.48 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 041259 79 TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALID 158 (257)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (257)
|..++..++.++++.|+.+....+++..-. +.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 467889999999999999999998876632 1111100 0000 2223345567777777777
Q ss_pred HHHcccCHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHH
Q 041259 159 GYLKHESFKEALNLKNRMTE-VGVDLDLNAYTSLVWGLS 196 (257)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~ 196 (257)
+|+..+++..|.++++...+ .+++.+..+|..|+.-+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 77777777777777766554 345555666666665444
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.46 E-value=0.0018 Score=37.32 Aligned_cols=55 Identities=25% Similarity=0.318 Sum_probs=29.2
Q ss_pred HHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 159 GYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
.|.+.+++++|.++++.+...++. +...+.....++...|++++|.+.++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445555555555555555554322 4445555555555555555555555555543
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.43 E-value=0.00076 Score=39.53 Aligned_cols=62 Identities=26% Similarity=0.336 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CC-CCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 186 NAYTSLVWGLSRCGHLQEARVLFHEMIGR----GI-LPD-EILCISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
.+++.+...|...|++++|+..+++..+. |- .|. ..++..+..++...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555555555555555555432 11 111 3344555555555666666666555543
No 208
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.39 E-value=0.049 Score=43.97 Aligned_cols=161 Identities=18% Similarity=0.113 Sum_probs=106.5
Q ss_pred HHHHHHHhcCcHHHHHHHHHhcccCCCCCCH------HHHHHHHHHHHh----cCcHHHHHHHHHHhhhCCCCCCHHHHH
Q 041259 85 VLIDGLCKSGLVREAIDYFGRMPDFGLHPNV------AVYTALIDGLCK----KNCIERARNLFDEMPKRDMIPDTTAYT 154 (257)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (257)
.++....-.||-+.+++.+.+..+.+--..+ -.|...+..++. ....+.|.++++.+.+.- |+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHH
Confidence 3444455578999999988877553311111 233333333332 457788999999998863 5655554
Q ss_pred H-HHHHHHcccCHHHHHHHHHHHHHcC---CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHH-H
Q 041259 155 A-LIDGYLKHESFKEALNLKNRMTEVG---VDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLK-K 229 (257)
Q Consensus 155 ~-l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 229 (257)
. -.+.+...|+.++|.+.|+...... .+.....+--+..++.-.++|++|...|..+.+.. ..+..+|..+.- +
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 4 3466778999999999999765421 12233455566777888999999999999999863 234445554443 3
Q ss_pred HHhcCCH-------HHHHHHHHHHHh
Q 041259 230 HYERGNM-------DEAIELQNEMMG 248 (257)
Q Consensus 230 ~~~~g~~-------~~a~~~~~~m~~ 248 (257)
+...|+. ++|.+++.+...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4467877 888888888755
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.32 E-value=0.047 Score=42.17 Aligned_cols=168 Identities=16% Similarity=0.111 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhcccCC---CCCCHHHHHHHHHHHHh---cCcHHHHHHHHHHhhhCCCCCCHHHHH
Q 041259 81 VTFCVLIDGLCKSGLVREAIDYFGRMPDFG---LHPNVAVYTALIDGLCK---KNCIERARNLFDEMPKRDMIPDTTAYT 154 (257)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (257)
.+.-.++-+|....+++...++.+.+.... +..+...--...-++.+ .|+.++|++++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334456667889999999999999997641 11122222234445666 899999999999966666677889998
Q ss_pred HHHHHHHc---------ccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCc-H---HHHHHHH---HH-HHhCCC-
Q 041259 155 ALIDGYLK---------HESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGH-L---QEARVLF---HE-MIGRGI- 216 (257)
Q Consensus 155 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~---~~a~~~~---~~-~~~~~~- 216 (257)
.+.+.|-. ....++|...|.+.-+.. |+...=-.++..+...|. . .+..++- .. +.+.|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 88887643 224667777777665542 444332222223333332 1 1222222 22 223332
Q ss_pred --CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 217 --LPDEILCISLLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 217 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
..+-..+.+++.++.-.|+.++|.+..++|.+..
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 3455667789999999999999999999998653
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.30 E-value=0.0015 Score=38.22 Aligned_cols=63 Identities=25% Similarity=0.366 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHc----CCC-cc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 151 TAYTALIDGYLKHESFKEALNLKNRMTEV----GVD-LD-LNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
.+++.+...|...|++++|+..+++..+. |.. |. ..++..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777777777777777766532 111 22 45677777778888888888887776653
No 211
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.30 E-value=0.06 Score=42.98 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=93.9
Q ss_pred HHHHhcCChhhHHHHHHHHH-HcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcH
Q 041259 18 WGLCIESKFEDSKLLLSEMK-ENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLV 96 (257)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (257)
....-.++++++.++...-. -..+| ....+.++..+-+.|..+.|+++.++-. .-.....+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 34455778888776664211 11122 4457778888888888888877754432 123445567888
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHH
Q 041259 97 REAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRM 176 (257)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (257)
+.|.++.++. .+...|..|.....+.|+++-|.+.|.+.. -+..|+-.|...|+.+...++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 8887776554 366688888888888888888888887764 3455666677778887777777766
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 041259 177 TEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHE 210 (257)
Q Consensus 177 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 210 (257)
...|- ++....++...|+.++..+++.+
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66552 34444555566777777766643
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.22 E-value=0.022 Score=46.48 Aligned_cols=91 Identities=16% Similarity=0.035 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHH--------
Q 041259 150 TTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEI-------- 221 (257)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------- 221 (257)
..+...+...+.+...+.-|-++|..|-+ ...++......++|++|..+.+...+. .||+.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 34444444444555666667777766543 234566777889999998887766553 34432
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041259 222 ---LCISLLKKHYERGNMDEAIELQNEMMGRGL 251 (257)
Q Consensus 222 ---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 251 (257)
-|...-++|.++|+-.+|..+++++....+
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 244455678889999999999988865443
No 213
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.20 E-value=0.061 Score=40.97 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 041259 117 VYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLS 196 (257)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 196 (257)
+.+..+.-+...|+...|.++-++.. .|+...|-..+.+++..++|++...+... . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 33445666677788888877766653 35888888899999999999887775432 1 24577888999999
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041259 197 RCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNE 245 (257)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (257)
..|+..+|..++.+ ++ + ..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k-----~~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IP-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHh-----CC-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 99999988887766 11 1 3455666777777777665433
No 214
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.14 E-value=0.075 Score=44.05 Aligned_cols=15 Identities=33% Similarity=0.304 Sum_probs=8.0
Q ss_pred HhcCCHHHHHHHHHH
Q 041259 231 YERGNMDEAIELQNE 245 (257)
Q Consensus 231 ~~~g~~~~a~~~~~~ 245 (257)
...++.-+|++..++
T Consensus 921 l~~~~~~eaIe~~Rk 935 (1189)
T KOG2041|consen 921 LADANHMEAIEKDRK 935 (1189)
T ss_pred HhhcchHHHHHHhhh
Confidence 344555566655544
No 215
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.021 Score=41.48 Aligned_cols=95 Identities=22% Similarity=0.189 Sum_probs=48.5
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHcCCC--ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-CCCC-cHHHHHHHHH
Q 041259 153 YTALIDGYLKHESFKEALNLKNRMTEVGVD--LDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR-GILP-DEILCISLLK 228 (257)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~ 228 (257)
|+.-+.. ...|++..|...|...++..+. -....+-+|..++...|+++.|..+|..+.+. +-.| -+..+..|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4443333 3345566666666665554321 12334455566666666666666666555543 1111 1244455555
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 041259 229 KHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 229 ~~~~~g~~~~a~~~~~~m~~ 248 (257)
+..+.|+.++|..+|+++.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 55566666666666666554
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.03 Score=43.04 Aligned_cols=91 Identities=20% Similarity=0.124 Sum_probs=51.4
Q ss_pred HHHHhcCChhhHHHHHHHHHHc-----CCCc---------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHH
Q 041259 18 WGLCIESKFEDSKLLLSEMKEN-----GLTA---------NTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTF 83 (257)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (257)
..+.+.|++..|..-|+..... +.++ -..++..+.-++.+.+++..|+...++.+..+ +++.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3566778888888777775432 1111 11234555555666666666666666665543 3345555
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhcccC
Q 041259 84 CVLIDGLCKSGLVREAIDYFGRMPDF 109 (257)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (257)
..-..++...|+++.|...|+++.+.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 55555666666666666666666554
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.99 E-value=0.041 Score=43.24 Aligned_cols=64 Identities=13% Similarity=-0.028 Sum_probs=55.6
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANT----VICTTLMDAYFKAGEPSEALSLLDEMLDS 74 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (257)
+...++.+..+|.+.|++++|+..|++..+.+ |+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56678889999999999999999999988864 553 35899999999999999999999999875
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.97 E-value=0.033 Score=43.77 Aligned_cols=64 Identities=19% Similarity=0.156 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHhhhC
Q 041259 79 TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNV----AVYTALIDGLCKKNCIERARNLFDEMPKR 144 (257)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (257)
+...++.+..+|...|++++|+..|++..+.. |+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555666666666666666666666655442 332 23555666666666666666666665553
No 219
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.96 E-value=0.035 Score=44.27 Aligned_cols=132 Identities=14% Similarity=0.095 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGL 90 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (257)
...+.++..+-+.|-.+.|+++..+-. .-.....+.|+++.|.++.++. .+...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 347888888889999988888743321 2335667899999998775443 2678999999999
Q ss_pred HhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHH
Q 041259 91 CKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEAL 170 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (257)
.+.|+++.|.+.|++..+ +..|+-.|...|+.+.-.++.+.....| -++....++.-.|+.+++.
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHH
Confidence 999999999999998764 5678888889999988888888877765 3455666677789999988
Q ss_pred HHHHH
Q 041259 171 NLKNR 175 (257)
Q Consensus 171 ~~~~~ 175 (257)
+++.+
T Consensus 423 ~lL~~ 427 (443)
T PF04053_consen 423 DLLIE 427 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.039 Score=42.44 Aligned_cols=105 Identities=14% Similarity=0.021 Sum_probs=55.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHH
Q 041259 53 DAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIE 132 (257)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (257)
..+.+.|++..|..-|++.... +. . .+.-+.++.... . ..-..++..+..++.+.+++.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~-l~-~-----------~~~~~~ee~~~~-~-------~~k~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSF-LE-Y-----------RRSFDEEEQKKA-E-------ALKLACHLNLAACYLKLKEYK 274 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHH-hh-c-----------cccCCHHHHHHH-H-------HHHHHHhhHHHHHHHhhhhHH
Confidence 4677888888888888886542 00 0 000011111111 1 011234455555666666666
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHc
Q 041259 133 RARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEV 179 (257)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (257)
.|+..-+..+..+.. |.-...--.+++...|+++.|+..|+.+.+.
T Consensus 275 ~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 275 EAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 666666655555433 5555555555666666666666666666654
No 221
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.92 E-value=0.048 Score=35.08 Aligned_cols=138 Identities=16% Similarity=0.161 Sum_probs=75.8
Q ss_pred cCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHH
Q 041259 93 SGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNL 172 (257)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (257)
.|..++..++..+...+ .+..-+|.+|--....-+-+-..++++.+-+. .|.. ..|+.......
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrVi~C 78 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRVIEC 78 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHHHHH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHHHHH
Confidence 46666666666666542 34445555544444444444444444444322 1221 22333333322
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041259 173 KNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGRGLL 252 (257)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 252 (257)
+-. .| .+.......+..+..+|+-++..++...+.+. -.+++.....+..+|.+.|+..++.+++.+..++|++
T Consensus 79 ~~~---~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 79 YAK---RN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHH---TT-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHH---hc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 221 11 13455666778888899999999998888753 4678888888999999999999999999999988864
No 222
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.11 Score=39.27 Aligned_cols=150 Identities=11% Similarity=0.112 Sum_probs=81.6
Q ss_pred cCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCcccHHHHHHHHHHHHhcCcHHHH
Q 041259 23 ESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS---RIEVTVVTFCVLIDGLCKSGLVREA 99 (257)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a 99 (257)
+|++.+|-..++++.+. .|.|...+...=.+|...|+.+.-...++++... +.+........+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45555555566666553 4556666666666666677766666666666543 2222223333344455566777777
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC----CCHHHHHHHHHHHHcccCHHHHHHHHHH
Q 041259 100 IDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMI----PDTTAYTALIDGYLKHESFKEALNLKNR 175 (257)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (257)
++.-++..+.+ +.|.....+....+-..|+++++.++..+-... .. .-...|=...-.+...+.++.|+++|+.
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 77776666554 455556666666666677777777665543321 00 0011111122233445667777776653
No 223
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.90 E-value=0.11 Score=40.93 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHH-HHHHH
Q 041259 81 VTFCVLIDGLCKSGLVREAIDYFGRMPDFG-LHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAY-TALID 158 (257)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 158 (257)
.+|...++...+..-++.|..+|-++.+.+ +.+++..+++++..++ .|+...|.++|+--...- ||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 345556666666666777777777777666 4566666677666554 466667777776544432 233332 34455
Q ss_pred HHHcccCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 159 GYLKHESFKEALNLKNRMTEVGVDLD--LNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
.+...++-+.|..+|+..... +..+ ...|..+|..-..-|+...+..+=+++..
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 556667777777777754432 1112 34667777766677777666666665554
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.86 E-value=0.14 Score=39.48 Aligned_cols=216 Identities=13% Similarity=0.147 Sum_probs=114.1
Q ss_pred hcCChhhHHHHHHHHHHcCCCccHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHH
Q 041259 22 IESKFEDSKLLLSEMKENGLTANTVI--CTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREA 99 (257)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (257)
-.|+++.|.+-|+.|... |.... ...|.-..-+.|..+.|.++-+.....- +.-...+...+...+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 457777777777777752 22221 1222223345677777777776665542 22356777788888888888888
Q ss_pred HHHHHhcccCC-CCCCHHHH---------------------------------------HHHHHHHHhcCcHHHHHHHHH
Q 041259 100 IDYFGRMPDFG-LHPNVAVY---------------------------------------TALIDGLCKKNCIERARNLFD 139 (257)
Q Consensus 100 ~~~~~~~~~~~-~~~~~~~~---------------------------------------~~l~~~~~~~~~~~~a~~~~~ 139 (257)
+++.+.-.... +.+++.-- ..-..++.+.|+..++-.+++
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 88887654321 12221100 112233444455555555555
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHc-CCCc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC
Q 041259 140 EMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEV-GVDL-DLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGIL 217 (257)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (257)
.+-+..+.|+.. . +..+.+.|+. +.+-+++..+. ..+| +......+..+....|++..|..--+.... ..
T Consensus 288 ~aWK~ePHP~ia--~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~ 359 (531)
T COG3898 288 TAWKAEPHPDIA--L--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EA 359 (531)
T ss_pred HHHhcCCChHHH--H--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hC
Confidence 554443333221 1 1122233322 22222211110 0111 344445556666677777777666555554 36
Q ss_pred CcHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC
Q 041259 218 PDEILCISLLKKHY-ERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 218 ~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~ 249 (257)
|....|..|...-. ..|+-.++..++.+-.+.
T Consensus 360 pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 360 PRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 77777776666544 458888888887776654
No 225
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.11 Score=39.16 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=104.0
Q ss_pred hcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHH----HHHHHHHHhcCcHH
Q 041259 57 KAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVY----TALIDGLCKKNCIE 132 (257)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~ 132 (257)
-.|+..+|-..++++++. .|.|..+++..-.+|.-.|+...-...++++... ..++...| ..+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346667777777888775 4667788888888888889888888888887643 12343222 23344556789999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHc---CCCccHHHHHHHHHHHHhcCcHHHHHHHHH
Q 041259 133 RARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEV---GVDLDLNAYTSLVWGLSRCGHLQEARVLFH 209 (257)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (257)
+|.+.-++..+.+.. |...-.+....+...|+..++.++..+-... +--.-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999988887654 6677777788888889999888876653321 100112233334445667788999999987
Q ss_pred HHH
Q 041259 210 EMI 212 (257)
Q Consensus 210 ~~~ 212 (257)
.-.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
No 226
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.84 E-value=0.065 Score=35.38 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc
Q 041259 14 GTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKS 93 (257)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (257)
..++..+.+.+.......+++.+...+ +.+...++.++..|++.+ ..+.+..++. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 346666666666666777776666655 355556666666666543 2333333331 11223333455556666
Q ss_pred CcHHHHHHHHHhc
Q 041259 94 GLVREAIDYFGRM 106 (257)
Q Consensus 94 ~~~~~a~~~~~~~ 106 (257)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6666666665554
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.76 E-value=0.023 Score=41.58 Aligned_cols=90 Identities=16% Similarity=0.136 Sum_probs=69.0
Q ss_pred CCChhhHHHHHHHHHhc-----CChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC----------------ChHHHH
Q 041259 7 KADLPLYGTIIWGLCIE-----SKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAG----------------EPSEAL 65 (257)
Q Consensus 7 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 65 (257)
+.|-.+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|+..+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44666777777766543 556666677788889999999999999998875432 224578
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHhcCcH
Q 041259 66 SLLDEMLDSRIEVTVVTFCVLIDGLCKSGLV 96 (257)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (257)
+++++|...|+.||.++-..+++++.+.+..
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 8999999999999999999999999887653
No 228
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.71 E-value=0.16 Score=38.05 Aligned_cols=224 Identities=13% Similarity=0.077 Sum_probs=125.7
Q ss_pred HHhcCChhhHHHHHHHHHHcC--CCccHH------HHHHHHHHHHhcC-ChHHHHHHHHHHHhc--------CCccc---
Q 041259 20 LCIESKFEDSKLLLSEMKENG--LTANTV------ICTTLMDAYFKAG-EPSEALSLLDEMLDS--------RIEVT--- 79 (257)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~--- 79 (257)
..+.|+++.|..++.++.... ..|+.. .|+.-.. ..+.+ +++.|..++++..+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 357899999999999887643 223222 2333333 33455 888888888776432 12222
Q ss_pred --HHHHHHHHHHHHhcCcHHH---HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHH
Q 041259 80 --VVTFCVLIDGLCKSGLVRE---AIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYT 154 (257)
Q Consensus 80 --~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (257)
..+...++.+|...+..+. |..+++.+.... +-....+..-+..+.+.++.+++.+++.+|...-.. ....+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~ 159 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHH
Confidence 2456777888888776554 555666664332 223455555677777789999999999999876321 334455
Q ss_pred HHHHHH---HcccCHHHHHHHHHHHHHcCCCccHH-HHHHH-H---HHHHhcCc------HHHHHHHHHHHHhC-CCCCc
Q 041259 155 ALIDGY---LKHESFKEALNLKNRMTEVGVDLDLN-AYTSL-V---WGLSRCGH------LQEARVLFHEMIGR-GILPD 219 (257)
Q Consensus 155 ~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l-i---~~~~~~~~------~~~a~~~~~~~~~~-~~~~~ 219 (257)
..+..+ .. .....+...+..+....+.|... ....+ + -...+.++ .+....+++..... +.+.+
T Consensus 160 ~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 160 SILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 544444 33 33345556666555444454443 11111 1 11122221 44455555533332 22333
Q ss_pred HHHHHH-------HHHHHHhcCCHHHHHHHHHHHH
Q 041259 220 EILCIS-------LLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 220 ~~~~~~-------l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
..+-.+ -...+.+.++++.|.++|+-..
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 333222 2344667899999999998543
No 229
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.71 E-value=0.031 Score=40.95 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCH
Q 041259 202 QEARVLFHEMIGRGILPDEILCISLLKKHYERGNM 236 (257)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (257)
+=+++++++|...|+.||..+-..|+.+|.+.+-.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 34788899999999999999999999998877653
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.70 E-value=0.25 Score=40.07 Aligned_cols=161 Identities=19% Similarity=0.151 Sum_probs=107.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-Cccc-----HHHHHHHHHHHHh----cCcHHHHHHHHHhcccCCCCCCHHHHH
Q 041259 50 TLMDAYFKAGEPSEALSLLDEMLDSR-IEVT-----VVTFCVLIDGLCK----SGLVREAIDYFGRMPDFGLHPNVAVYT 119 (257)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (257)
.++....-.|+-+.+++.+.+..+.+ +.-. .-.|...+..+.. ..+.+.|.++++.+... -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 33444455789999999998876542 2211 1234444444433 45678899999999876 47776665
Q ss_pred HH-HHHHHhcCcHHHHHHHHHHhhhCC--C-CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHH-H
Q 041259 120 AL-IDGLCKKNCIERARNLFDEMPKRD--M-IPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVW-G 194 (257)
Q Consensus 120 ~l-~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~ 194 (257)
.. .+.+...|++++|.+.|+...... . ......+--+...+....+|++|.+.|..+.+.. .-+..+|..+.. +
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 44 456777999999999999765321 1 1123344556667888999999999999999864 235555555543 3
Q ss_pred HHhcCcH-------HHHHHHHHHHHh
Q 041259 195 LSRCGHL-------QEARVLFHEMIG 213 (257)
Q Consensus 195 ~~~~~~~-------~~a~~~~~~~~~ 213 (257)
+...|+. ++|.++|.+...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4456777 888888887654
No 231
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.69 E-value=0.077 Score=34.15 Aligned_cols=91 Identities=16% Similarity=0.088 Sum_probs=61.3
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHH---HHHHHHHHHhcCc
Q 041259 54 AYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAV---YTALIDGLCKKNC 130 (257)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~ 130 (257)
+....|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|++=+.+..+..-..+... |.--...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456778888888888887765 234677888888888888888888887777655432223222 2223345666777
Q ss_pred HHHHHHHHHHhhhCC
Q 041259 131 IERARNLFDEMPKRD 145 (257)
Q Consensus 131 ~~~a~~~~~~~~~~~ 145 (257)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766554
No 232
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.2 Score=38.87 Aligned_cols=118 Identities=17% Similarity=0.141 Sum_probs=78.4
Q ss_pred cCcHHHHHHHHHHhhhCCCCCCHHH-------------HHHHHHHHHcccCHHHHHHHHHHHHHcC---CCccHHHHHHH
Q 041259 128 KNCIERARNLFDEMPKRDMIPDTTA-------------YTALIDGYLKHESFKEALNLKNRMTEVG---VDLDLNAYTSL 191 (257)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l 191 (257)
.++.+.+...|++.+..++ +... +..-..-..+.|++..|.+.|.+.+... ..|+...|...
T Consensus 216 ~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 4556666666666655443 2211 1111223456789999999999887643 45667777777
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041259 192 VWGLSRCGHLQEARVLFHEMIGRGILPDEILCI---SLLKKHYERGNMDEAIELQNEMMGRGL 251 (257)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~~~~~ 251 (257)
.....+.|+..+|+.--++..+. |..... .-..++...++|++|.+-+++..+..-
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 78888999999999988887764 433322 233455667999999999998877543
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.17 Score=37.47 Aligned_cols=143 Identities=20% Similarity=0.136 Sum_probs=82.4
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHH
Q 041259 54 AYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIER 133 (257)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (257)
.....|++.+|...|......... +...--.+..+|...|+.+.|..++..+....-.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 455677788888888777765322 4455666777888888888888888777543211222222223344444444443
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCc
Q 041259 134 ARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEV--GVDLDLNAYTSLVWGLSRCGH 200 (257)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~ 200 (257)
...+-.+.-.. +. |...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..++..+.-.|.
T Consensus 222 ~~~l~~~~aad-Pd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD-PD-DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 33333333322 21 5556666777777788888877766555443 222 45555666666666553
No 234
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.62 E-value=0.052 Score=40.10 Aligned_cols=79 Identities=14% Similarity=0.268 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcc-----cCCCCCCHHHHH
Q 041259 45 TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMP-----DFGLHPNVAVYT 119 (257)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 119 (257)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|...|+++. +.|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4566777778888888888888888887763 4467778888888888888888888777764 467777777766
Q ss_pred HHHHH
Q 041259 120 ALIDG 124 (257)
Q Consensus 120 ~l~~~ 124 (257)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66555
No 235
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.62 E-value=0.25 Score=39.00 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 041259 115 VAVYTALIDGLCKKNCIERARNLFDEMPKRD-MIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVW 193 (257)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 193 (257)
..+|...+..-.+..-++.|..+|-++.+.+ ..+++..+++++..++ .|+...|..+|+--... .+-+..-..-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 3467778888888889999999999999988 5678888999998665 67888999999876554 2223344455677
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 194 GLSRCGHLQEARVLFHEMIGRGILPD--EILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.+...++-+.|..+|+..+.. +..+ ...|..+|..-..-|+...+..+-+.|..
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 778899999999999966543 2223 56788899888888998877776666543
No 236
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.60 E-value=0.21 Score=38.07 Aligned_cols=108 Identities=18% Similarity=0.203 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 041259 82 TFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYL 161 (257)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (257)
+.+.-+.-+...|+...|.++-.+.. .|+...|-.-+.+++..++|++-.++... +. ++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK----sPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KK----SPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC----CCCChHHHHHHHH
Confidence 34455666777888989988877764 48999999999999999999988876543 22 4578899999999
Q ss_pred cccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHH
Q 041259 162 KHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFH 209 (257)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (257)
..|+..+|..+... ++ +..-+..|.+.|++.+|.+...
T Consensus 249 ~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999988776 22 2455778889999999977644
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.56 E-value=0.068 Score=38.97 Aligned_cols=97 Identities=11% Similarity=0.077 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCc-c-cHHHHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENG--LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIE-V-TVVTFCVLI 87 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll 87 (257)
.|+..+.. .+.|++..|...|....+.. -......+-.|..++...|+++.|..+|..+.+.-.. | -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35544443 34455666666666655542 1112223444556666666666666666555543111 1 124444455
Q ss_pred HHHHhcCcHHHHHHHHHhcccC
Q 041259 88 DGLCKSGLVREAIDYFGRMPDF 109 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~ 109 (257)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555566666666666655543
No 238
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.44 E-value=0.1 Score=33.56 Aligned_cols=91 Identities=16% Similarity=0.058 Sum_probs=71.5
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccH---HHHHHHHHHHHhcCc
Q 041259 19 GLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTV---VTFCVLIDGLCKSGL 95 (257)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~ 95 (257)
+++..|+++.|++.|.+.... .|.....||.-..++.-.|+.++|++=+++..+..-.-+. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 467789999999999999876 3667889999999999999999999999998874222232 233344456777889
Q ss_pred HHHHHHHHHhcccCC
Q 041259 96 VREAIDYFGRMPDFG 110 (257)
Q Consensus 96 ~~~a~~~~~~~~~~~ 110 (257)
.+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999988888887766
No 239
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.43 E-value=0.14 Score=33.84 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=17.0
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK 127 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (257)
+..+.+.+.......+++.+...+ ..+...++.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 333333444444444444444333 2333444444444443
No 240
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.11 Score=38.74 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=87.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHH----------HcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CcccHHH
Q 041259 16 IIWGLCIESKFEDSKLLLSEMK----------ENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSR---IEVTVVT 82 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 82 (257)
|.+.|+..+.|+.-....-.+- ..|.+....+...++..-....+++.++..+-++..+. ..|+ .+
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~ 103 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WT 103 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-cc
Confidence 5555666666654333331221 23455566666777776666788999999888887542 1112 12
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCC
Q 041259 83 FCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRD 145 (257)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (257)
-...++.+.+ -++++++.++..-+..|+.||..+++.+++.+.+.+++.+|.++.-.|....
T Consensus 104 ~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 104 IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2233444443 4677999999999999999999999999999999999999999887776543
No 241
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.31 E-value=0.19 Score=34.17 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=9.8
Q ss_pred hcCCcccHHHHHHHHHHHHhcCc
Q 041259 73 DSRIEVTVVTFCVLIDGLCKSGL 95 (257)
Q Consensus 73 ~~~~~~~~~~~~~ll~~~~~~~~ 95 (257)
+.+++|+...+..+++.+.+.|.
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCC
Confidence 33444444444444444444443
No 242
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.29 E-value=0.11 Score=38.53 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----CCCCCcHHHHHHH
Q 041259 152 AYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIG-----RGILPDEILCISL 226 (257)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 226 (257)
++..++..+...|+.+.+...++++....+ -+...|..++.+|.+.|+...|+..++.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 556666677777777777777777777643 3677777777777777777777777776654 3677777666655
Q ss_pred HHH
Q 041259 227 LKK 229 (257)
Q Consensus 227 ~~~ 229 (257)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.29 E-value=0.025 Score=28.79 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=9.7
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHH
Q 041259 155 ALIDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
.+..+|...|++++|.+++++..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.29 E-value=0.018 Score=29.31 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 188 YTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
+..+...|...|++++|++++++.++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555555555555543
No 245
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.33 Score=41.18 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=22.8
Q ss_pred HhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 041259 91 CKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMP 142 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (257)
.........-.+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+...
T Consensus 408 Ldaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred cCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 333344444444444444443 222333445555555555555544444433
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.23 E-value=0.18 Score=33.16 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=53.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc
Q 041259 16 IIWGLCIESKFEDSKLLLSEMKENG--LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKS 93 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (257)
-.....+.|++++|.+.|+.+..+- -+-....--.|+.+|.+.+++++|...+++.++..+......|...+.+++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3344567888999999998888761 12344556678888889999999999999888765443334455555555443
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.67 Score=39.50 Aligned_cols=70 Identities=16% Similarity=0.157 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 041259 66 SLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFD 139 (257)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 139 (257)
.+++.+.+.|.. +...-..|+.+|.+.++.+...++.+... .|.. .......+..+.+.+-.++|..+-.
T Consensus 418 ~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 418 SYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHH
Confidence 333333333332 33333455555555555555555444433 1111 0112234444445555555544433
No 248
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.20 E-value=0.3 Score=35.46 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=49.4
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--cccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHH
Q 041259 43 ANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRI--EVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTA 120 (257)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (257)
|-...|+..+. -.+.|++++|.+.|+.+....+ +-...+.-.++.++.+.+++++|+..+++..+.-.......|..
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 33344554443 4477888888888888875421 22344555566777788888888888887765432222234444
Q ss_pred HHHHHH
Q 041259 121 LIDGLC 126 (257)
Q Consensus 121 l~~~~~ 126 (257)
.|.+++
T Consensus 112 YlkgLs 117 (254)
T COG4105 112 YLKGLS 117 (254)
T ss_pred HHHHHH
Confidence 444444
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=96.18 E-value=0.48 Score=37.63 Aligned_cols=80 Identities=14% Similarity=0.019 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 041259 132 ERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEM 211 (257)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 211 (257)
.+|.++-+...+.+.. |......+..+....++++.+...|++....++. ...+|......+.-.|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455555554433 5555555555445555555555555555554322 2334444444444455556665555554
Q ss_pred Hh
Q 041259 212 IG 213 (257)
Q Consensus 212 ~~ 213 (257)
.+
T Consensus 399 lr 400 (458)
T PRK11906 399 LQ 400 (458)
T ss_pred hc
Confidence 44
No 250
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.10 E-value=0.41 Score=36.14 Aligned_cols=130 Identities=12% Similarity=0.211 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh--cC----cHHHHHHHHHhcccCCC---CCCHHHHHHHHHHHHhcCcH
Q 041259 61 PSEALSLLDEMLDSRIEVTVVTFCVLIDGLCK--SG----LVREAIDYFGRMPDFGL---HPNVAVYTALIDGLCKKNCI 131 (257)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 131 (257)
+++.+.+++.+.+.|..-+..+|-+..-.... .. ....+..+|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456666667776666565555443222222 22 24556677777765431 1233344444333 22222
Q ss_pred ----HHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHcccC--HHHHHHHHHHHHHcCCCccHHHHHHHH
Q 041259 132 ----ERARNLFDEMPKRDMIPDT--TAYTALIDGYLKHES--FKEALNLKNRMTEVGVDLDLNAYTSLV 192 (257)
Q Consensus 132 ----~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li 192 (257)
+.+..+|+.+.+.|+...- ...+.++.......+ ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 3455566666665544322 223333322222211 345666777777777776666555443
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.4 Score=35.61 Aligned_cols=149 Identities=18% Similarity=0.133 Sum_probs=97.7
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCH
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESF 166 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (257)
.......|+..+|..+|....... +-+...--.++.+|...|+.+.|..++..+....-.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344567788999999988887653 3344566678889999999999999999987653332222322334444444444
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHhcCCHHHH
Q 041259 167 KEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR--GILPDEILCISLLKKHYERGNMDEA 239 (257)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a 239 (257)
.+..++-+..... +-|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..++..+.--|.-+.+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHH
Confidence 4444444444432 126677777888889999999999888877765 333 455666777777766644433
No 252
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=96.03 E-value=0.62 Score=37.53 Aligned_cols=162 Identities=12% Similarity=0.108 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 041259 46 VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGL 125 (257)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (257)
...-+++..+.....+.-++.+..+++.-| .+-..|..++.+|... ..+.-..+|+++.+..+ .|+..-..|+..|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence 333444555555555555555555555442 2444555555555555 34455555555555432 2222223333333
Q ss_pred HhcCcHHHHHHHHHHhhhCCCC-----CCHHHHHHHHHHHHcccCHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHHhcC
Q 041259 126 CKKNCIERARNLFDEMPKRDMI-----PDTTAYTALIDGYLKHESFKEALNLKNRMTE-VGVDLDLNAYTSLVWGLSRCG 199 (257)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~ 199 (257)
-+ ++.+.+..+|..+..+-++ .-...|..+... -..+.+....+...+.. .|...-...+..+-..|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 32 5555555555554333111 011233333321 12344444444444432 222223344455555566666
Q ss_pred cHHHHHHHHHHHHhC
Q 041259 200 HLQEARVLFHEMIGR 214 (257)
Q Consensus 200 ~~~~a~~~~~~~~~~ 214 (257)
++++|++++..+.+.
T Consensus 220 N~~eai~Ilk~il~~ 234 (711)
T COG1747 220 NWTEAIRILKHILEH 234 (711)
T ss_pred CHHHHHHHHHHHhhh
Confidence 666666666666554
No 253
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.03 E-value=0.23 Score=34.36 Aligned_cols=111 Identities=16% Similarity=0.061 Sum_probs=68.3
Q ss_pred HHHHHHcCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCccc--HHHHHHHHHHHHhcCcHHHHHHHHHhcccC
Q 041259 33 LSEMKENGLTAN-TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVT--VVTFCVLIDGLCKSGLVREAIDYFGRMPDF 109 (257)
Q Consensus 33 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (257)
++......+.-+ ...+..+...|.+.|+.+.|++.|.++.+....+. ...+-.+++.....+++..+.....+....
T Consensus 23 lk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 23 LKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333334433333 34677888889999999999999988877543333 355667788888888888888887766432
Q ss_pred CCCCCHHHHHHHHH-----HHHhcCcHHHHHHHHHHhhh
Q 041259 110 GLHPNVAVYTALID-----GLCKKNCIERARNLFDEMPK 143 (257)
Q Consensus 110 ~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~ 143 (257)
--.+.......-+. .+...+++..|-+.|-+...
T Consensus 103 ~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 103 IEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 11111111111111 23446788888887766543
No 254
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.98 E-value=0.29 Score=33.32 Aligned_cols=137 Identities=16% Similarity=0.174 Sum_probs=91.6
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHc
Q 041259 100 IDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEV 179 (257)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (257)
.+++..+.+.+++|+...+..++..+.+.|++.....+ ...++-+|.......+-.+.. ....+.++--+|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 45566666788899999999999999999997665544 455555566555544433332 233444443344332
Q ss_pred CCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 180 GVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 180 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
=...+..++..+...|++-+|.++.+..... +......++++..+.+|...-..+++-..+++
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 0114567788889999999999998765332 22233557888888888888888888777765
No 255
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.56 Score=36.59 Aligned_cols=158 Identities=12% Similarity=0.054 Sum_probs=101.2
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHH-------------HHHH
Q 041259 19 GLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVV-------------TFCV 85 (257)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~ 85 (257)
++.-.|++++|.+.-....+.. +.+......--.++...++.+.+...|++.+..+ |+.. .+..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHh
Confidence 3456788888888877777653 2233222222233445677888888888887653 3221 2222
Q ss_pred HHHHHHhcCcHHHHHHHHHhcccCC---CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 041259 86 LIDGLCKSGLVREAIDYFGRMPDFG---LHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLK 162 (257)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (257)
-.+-..+.|.+..|.+.|.+.+... ..++...|-.......+.|+..+|+.--+...+.+.. -...|..-..++..
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~ 333 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLA 333 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHH
Confidence 3344567899999999999886542 3445556666777788899999998888777665311 12233333445666
Q ss_pred ccCHHHHHHHHHHHHHcC
Q 041259 163 HESFKEALNLKNRMTEVG 180 (257)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~ 180 (257)
.++|++|.+-++...+..
T Consensus 334 le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 788999998888776643
No 256
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.18 Score=37.74 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHH
Q 041259 112 HPNVAVYTALIDGLCKKNCIERARNLFDEMPKRD---MIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAY 188 (257)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (257)
+....+...++..-....+++.+...+-.++..- ..|+.. -...++.+ -.-++++++.++..-++.|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3444455555555555667777777766665431 111211 12222222 234566777777777778888888888
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 189 TSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 189 ~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
+.++..+.+.+++.+|.++...|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888887777777654
No 257
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.95 E-value=0.37 Score=34.26 Aligned_cols=222 Identities=22% Similarity=0.152 Sum_probs=145.1
Q ss_pred CChhhHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCcccHHHHHHHHHHHHhcCcHHHHHH
Q 041259 24 SKFEDSKLLLSEMKENGLT-ANTVICTTLMDAYFKAGEPSEALSLLDEMLDS-RIEVTVVTFCVLIDGLCKSGLVREAID 101 (257)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (257)
+.+..+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555566666665554311 12566677777788888888888888777652 234455666677777777788888888
Q ss_pred HHHhcccCCCCCCHHHHHHHHH-HHHhcCcHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 041259 102 YFGRMPDFGLHPNVAVYTALID-GLCKKNCIERARNLFDEMPKRDM--IPDTTAYTALIDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
.+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 888877643222 122222333 67888999999998888755322 12334444444446677888888888888877
Q ss_pred cCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 179 VGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD-EILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 179 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.........+..+...+...++++.+...+...... .|+ ...+..+...+...+..+.+...+.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 632213567777788888888888888888888775 233 34444455555566778888887777654
No 258
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.93 E-value=0.33 Score=33.58 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCC-CHHHHH--
Q 041259 80 VVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPN--VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIP-DTTAYT-- 154 (257)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~-- 154 (257)
...+..+...|.+.|+.+.|++.|.++.+....+. ...+-.+|+.....+++..+...+.+....-..+ |...-+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 35677899999999999999999999987654443 3456778888999999999998887764431111 121111
Q ss_pred HHHH--HHHcccCHHHHHHHHHHHH
Q 041259 155 ALID--GYLKHESFKEALNLKNRMT 177 (257)
Q Consensus 155 ~l~~--~~~~~~~~~~a~~~~~~~~ 177 (257)
.... .+...+++..|-+.|-...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 1111 2345789999888876654
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.77 E-value=0.67 Score=35.92 Aligned_cols=202 Identities=11% Similarity=0.103 Sum_probs=100.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCc----ccHHHHHHHHHHHH
Q 041259 16 IIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIE----VTVVTFCVLIDGLC 91 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~ 91 (257)
...+..+.|+|+...+........ .++...+..+... ..++++++...+++....-.. .....|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 456677888888855555554432 2345555555443 778888888887776543100 01122222222222
Q ss_pred hcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHH
Q 041259 92 KSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALN 171 (257)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (257)
+...+.+..++.+-..... .+ ..+.....+.++.=... ..++..++..++..-..
T Consensus 80 ~lq~L~Elee~~~~~~~~~--~~-------------~~~~~~l~~~W~~Rl~~-~~~~~~~~~~il~~R~~--------- 134 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLS--QN-------------PQDLKSLLKRWRSRLPN-MQDDFSVWEPILSLRRL--------- 134 (352)
T ss_pred HHhHHHHHHHHHHHHHhhc--cc-------------HHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHH---------
Confidence 2222333322222221110 01 11122222233221111 23344455444432110
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 172 LKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILP---DEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
++..+ ........+|..+++.+.+.|.++.|...+..+...+..+ .+.....-++.....|+..+|+..++...+
T Consensus 135 ~l~~~--~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 135 VLSLI--LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHhcc--cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00000 1122345677777888888888888888888777643211 334444556666778888888888877776
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.71 E-value=0.47 Score=33.69 Aligned_cols=203 Identities=22% Similarity=0.143 Sum_probs=146.3
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 10 LPLYGTIIWGLCIESKFEDSKLLLSEMKEN-GLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
...+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 456677778888899999999988888752 234566677777788888888999999999998754333 222333333
Q ss_pred -HHHhcCcHHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccC
Q 041259 89 -GLCKSGLVREAIDYFGRMPDFGL--HPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHES 165 (257)
Q Consensus 89 -~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (257)
.+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 78899999999999999855221 123334444445567789999999999998876432136677888888888999
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 166 FKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
++.+...+......... ....+..+...+...+..+.+...+......
T Consensus 218 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999988876432 2344444544555777899999998888875
No 261
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.52 Score=34.11 Aligned_cols=194 Identities=15% Similarity=0.122 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcc------HHHHHHHHHHHHhcCChHHHHHHHHHHH----hcCCcccH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTAN------TVICTTLMDAYFKAGEPSEALSLLDEML----DSRIEVTV 80 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~ 80 (257)
..|.....+|....++++|...+.+..+. ...+ ...|...+-..-+...+.++..++++.. +.| .|++
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdt 109 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDT 109 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-Ccch
Confidence 34666777788888999988877776532 1122 2234444444455566777777777653 334 3343
Q ss_pred HHHH--HHHHHHHhcCcHHHHHHHHHhccc---CC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh----CCCCCC
Q 041259 81 VTFC--VLIDGLCKSGLVREAIDYFGRMPD---FG--LHPNVAVYTALIDGLCKKNCIERARNLFDEMPK----RDMIPD 149 (257)
Q Consensus 81 ~~~~--~ll~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~ 149 (257)
.... .... ....-+++.|+++|++... .+ ...-...+..+-+.+.+...+.+|-..+.+-.. -.-.++
T Consensus 110 AAmaleKAak-~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~ 188 (308)
T KOG1585|consen 110 AAMALEKAAK-ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS 188 (308)
T ss_pred HHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence 3221 1111 2345667778887776532 11 011223445555666777777766555443211 111112
Q ss_pred H-HHHHHHHHHHHcccCHHHHHHHHHHHHHcC---CCccHHHHHHHHHHHHhcCcHHHHHHHH
Q 041259 150 T-TAYTALIDGYLKHESFKEALNLKNRMTEVG---VDLDLNAYTSLVWGLSRCGHLQEARVLF 208 (257)
Q Consensus 150 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~ 208 (257)
. ..|...|-.+....++..|...++.-.+.+ -.-+..+...|+.+| ..|+.+++..++
T Consensus 189 ~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 189 QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 1 335556666777788888888888754432 122456677777776 457777766654
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.70 E-value=0.53 Score=34.24 Aligned_cols=187 Identities=16% Similarity=0.124 Sum_probs=103.0
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHH
Q 041259 10 LPLYGTIIWGLCIESKFEDSKLLLSEMKENG--LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLI 87 (257)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (257)
...|+..+. -.+.|++++|.+.|+.+..+. -+-...+--.++.++.+.++++.|+..+++............|-..|
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 344555444 457899999999999998762 23345566677888999999999999999998764433344555555
Q ss_pred HHHHh-------cCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 041259 88 DGLCK-------SGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGY 160 (257)
Q Consensus 88 ~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (257)
.+++. ..|...+...+..+. .++.-|=...-...|..-+..+... =...=..+.+.|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~------------~~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY 177 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFK------------ELVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYY 177 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHH------------HHHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 55542 122222222222221 1111111111111111111111100 000112345667
Q ss_pred HcccCHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 161 LKHESFKEALNLKNRMTEVGV--DLDLNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
.+.|.+..|..-++.+.+.-. .-....+-.+..+|...|-.++|.+.-.-+..
T Consensus 178 ~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 178 LKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 777777777777777776511 11234455666777777777777776554443
No 263
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.42 Score=32.61 Aligned_cols=134 Identities=15% Similarity=0.167 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHH-HHHHH-
Q 041259 80 VVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVA-VYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTT-AYTAL- 156 (257)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l- 156 (257)
...|...++. .+.+..++|+.-|..+.+.|...-+. .-..........|+...|...|+++-.....|... -..-|
T Consensus 59 gd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 3445444443 34456677777777776655432211 11112334456677777777777776654444332 11111
Q ss_pred -HHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 157 -IDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 157 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
...+...|.+++.....+-+...+-+--...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1123456666666666665554443333344455555666777777777777766654
No 264
>PRK11906 transcriptional regulator; Provisional
Probab=95.51 E-value=0.98 Score=35.99 Aligned_cols=162 Identities=10% Similarity=0.048 Sum_probs=104.8
Q ss_pred HHH--HHHHHHHHhcC-----ChHHHHHHHHHHHh-cCCccc-HHHHHHHHHHHHh---------cCcHHHHHHHHHhcc
Q 041259 46 VIC--TTLMDAYFKAG-----EPSEALSLLDEMLD-SRIEVT-VVTFCVLIDGLCK---------SGLVREAIDYFGRMP 107 (257)
Q Consensus 46 ~~~--~~l~~~~~~~~-----~~~~a~~~~~~~~~-~~~~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~ 107 (257)
..| ...+.+..... ..+.|+.+|.+... +...|+ ...|..+..++.. ..+..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55555544422 35678888998882 223333 4444444433322 234566777777777
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC-ccHH
Q 041259 108 DFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVD-LDLN 186 (257)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 186 (257)
+.+ +.|......+..+..-.++++.|...|++....++. ...+|........-.|+.++|.+.+++..+..+. .-..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 766 567777777777778888899999999999887654 5566777777777899999999999997665321 1222
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHH
Q 041259 187 AYTSLVWGLSRCGHLQEARVLFHE 210 (257)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~ 210 (257)
.....+..|+.. ..+.|.+++-+
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHHhh
Confidence 333344455554 56777777654
No 265
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.49 E-value=1.2 Score=37.05 Aligned_cols=180 Identities=13% Similarity=0.108 Sum_probs=110.4
Q ss_pred hhhHHHHHHHHHHcCCCccHHHHHHHHHH---HHhcCChHHHHHHHHHHHh-------cCCcccHHHHHHHHHHHHhcC-
Q 041259 26 FEDSKLLLSEMKENGLTANTVICTTLMDA---YFKAGEPSEALSLLDEMLD-------SRIEVTVVTFCVLIDGLCKSG- 94 (257)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~- 94 (257)
...|.++++...+.|. ........++.. +....+.+.|+.+++...+ .+ .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4568888888877762 222222222222 3355788999999998876 44 3345666777777643
Q ss_pred ----cHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh-cCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH----cccC
Q 041259 95 ----LVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK-KNCIERARNLFDEMPKRDMIPDTTAYTALIDGYL----KHES 165 (257)
Q Consensus 95 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 165 (257)
+.+.|+.++....+.| .|+....-..+..... ..+...|.++|...-+.|.. ..+-.+..+|. ...+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCC
Confidence 6677999999988887 4665554443333333 35678999999999888754 23333333322 3457
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC
Q 041259 166 FKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRG 215 (257)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 215 (257)
.+.|..++.+..+.| .|...--...+..+.. +.++.+.-.+..+...|
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 889999999998887 3332222223333333 66666666665555544
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.44 E-value=0.052 Score=26.20 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 223 CISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 223 ~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
|..|...|.+.|++++|++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777777888888888777744
No 267
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.41 E-value=0.55 Score=38.94 Aligned_cols=221 Identities=16% Similarity=0.142 Sum_probs=112.8
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHH---------HHHHHcCCCccHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhc
Q 041259 6 IKADLPLYGTIIWGLCIESKFEDSKLLL---------SEMKENGLTANTVICTTLMDAYFKAGE--PSEALSLLDEMLDS 74 (257)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~ 74 (257)
+.|....+.+-+..+...|.+++|.++- +.+-.. ..++-.++..=.+|.+..+ +-+.+.-++++.+.
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 4455555666677788888888886642 111111 1223334444555665544 33444445666777
Q ss_pred CCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHH-----HHHHHHhcCcHHHHHHHHHHhhh--CCCC
Q 041259 75 RIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTA-----LIDGLCKKNCIERARNLFDEMPK--RDMI 147 (257)
Q Consensus 75 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~--~~~~ 147 (257)
|-.|+... +...++-.|.+.+|.++|.+--... .-...|+- +..-+...|..++-..+.+.-.+ .+++
T Consensus 630 ge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k 704 (1081)
T KOG1538|consen 630 GETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK 704 (1081)
T ss_pred CCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC
Confidence 76676543 4455666788888888887643221 01111211 12233334444333333322111 1111
Q ss_pred CCHHHHHHHHHHHHcccCHHHHHHHHH------HHHHcCCC---ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 041259 148 PDTTAYTALIDGYLKHESFKEALNLKN------RMTEVGVD---LDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILP 218 (257)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 218 (257)
--.+....+...|+.++|..+.- -+.+.+.+ .+..+...+...+.+...+..|-++|..|-+.
T Consensus 705 ----ePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---- 776 (1081)
T KOG1538|consen 705 ----EPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---- 776 (1081)
T ss_pred ----CcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----
Confidence 01123344556677776665432 11221111 24456666666667777788888888877542
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041259 219 DEILCISLLKKHYERGNMDEAIELQNEM 246 (257)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m 246 (257)
.++++.....++|++|..+-+..
T Consensus 777 -----ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 777 -----KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred -----HHHhhheeecccchHhHhhhhhC
Confidence 23455555666666666655543
No 268
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.41 E-value=0.52 Score=32.18 Aligned_cols=122 Identities=13% Similarity=0.081 Sum_probs=51.4
Q ss_pred hcCChHHHHHHHHHHHhcCCcccHHH-HHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHH-HHHHH--HHHHHhcCcHH
Q 041259 57 KAGEPSEALSLLDEMLDSRIEVTVVT-FCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVA-VYTAL--IDGLCKKNCIE 132 (257)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~ 132 (257)
..+..++|+.-|.++.+-|...-+.. .-.......+.|+...|...|.++-...-.|-.. ....| .-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 44455555555555555443321111 1112233344555555555555554332222221 11111 11233455555
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 041259 133 RARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
.....++-+...+-+.-...-..|.-+-.+.|++.+|...|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555554443333222223333444444555555555555555544
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.40 E-value=0.053 Score=26.17 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 041259 48 CTTLMDAYFKAGEPSEALSLLDEML 72 (257)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (257)
|..|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
No 270
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.26 E-value=0.47 Score=30.77 Aligned_cols=140 Identities=13% Similarity=0.189 Sum_probs=71.8
Q ss_pred HhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHH
Q 041259 21 CIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAI 100 (257)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 100 (257)
.-.|..++..++..+.... .+..-+|.+|.-....-+-+-..+.++.+=+ --|... .|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~----------C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISK----------CGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-----------S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchh----------hcchHHHH
Confidence 3467777778887777664 3445555555555544454545555544422 112221 13333333
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcC
Q 041259 101 DYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVG 180 (257)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (257)
..+-.+- .+.......+......|.-+.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3332221 22334455566677777777777777776642 34566677777777777777777777777777776
Q ss_pred CC
Q 041259 181 VD 182 (257)
Q Consensus 181 ~~ 182 (257)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 54
No 271
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=95.16 E-value=0.25 Score=30.21 Aligned_cols=47 Identities=9% Similarity=0.020 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 168 EALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
+..+-+..+......|++....+.+++|.+.+++..|.++++..+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444444555555666666666666666666666666666665543
No 272
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.14 E-value=1 Score=34.07 Aligned_cols=133 Identities=16% Similarity=0.255 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh--c----CcHHHHHHHHHHhhhCCCC---CCHHHHHHHHHHHHcccCH
Q 041259 96 VREAIDYFGRMPDFGLHPNVAVYTALIDGLCK--K----NCIERARNLFDEMPKRDMI---PDTTAYTALIDGYLKHESF 166 (257)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 166 (257)
+++...+++.|.+.|+..+..+|-+....... . .....|..+++.|.+..+- ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566788899999988887766653333332 2 2355788999999887542 344555555443 44443
Q ss_pred ----HHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCc--HHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041259 167 ----KEALNLKNRMTEVGVDLDL--NAYTSLVWGLSRCGH--LQEARVLFHEMIGRGILPDEILCISLLKKH 230 (257)
Q Consensus 167 ----~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (257)
+.++.+|+.+.+.|...+. .....++..+..... ..++.++++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 4567788888887766433 334444443333222 457889999999999998888877555433
No 273
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.10 E-value=0.57 Score=30.88 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=11.2
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhC
Q 041259 120 ALIDGLCKKNCIERARNLFDEMPKR 144 (257)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (257)
.++.+|.+.+++++|...+++.++.
T Consensus 52 ~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 52 DLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3444444444444444444444443
No 274
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.08 E-value=0.36 Score=29.25 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 168 EALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
++.+-++.+......|++....+.+++|.+.+++..|.++++..+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555555566666666666666666666666666665553
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.99 E-value=1.3 Score=34.25 Aligned_cols=226 Identities=15% Similarity=0.144 Sum_probs=130.3
Q ss_pred HhcCChhhHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHH----HhcC-CcccHHHHHHHHHHHHhc
Q 041259 21 CIESKFEDSKLLLSEMKENG--LTANTVICTTLMDAYFKAGEPSEALSLLDEM----LDSR-IEVTVVTFCVLIDGLCKS 93 (257)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~-~~~~~~~~~~ll~~~~~~ 93 (257)
....+.++|+..+..-...- ..-...++..+..+.++.|.+++++..--.- .+.. -..-...|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777776655431 1112345666777778888877765542211 1110 011234555666666666
Q ss_pred CcHHHHHHHHHhcccC-CCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhC-----CCCCCHHHHHHHHHHHHccc
Q 041259 94 GLVREAIDYFGRMPDF-GLHP---NVAVYTALIDGLCKKNCIERARNLFDEMPKR-----DMIPDTTAYTALIDGYLKHE 164 (257)
Q Consensus 94 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~ 164 (257)
-++.+++.+-..-... |..| .......+..++...+.++++++.|+...+. +......++..+-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 6666666554443211 1111 1123344666777778888888888876542 11223457788888888888
Q ss_pred CHHHHHHHHHHHHHc----CCCccH------HHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCc-HHHHHHHHHH
Q 041259 165 SFKEALNLKNRMTEV----GVDLDL------NAYTSLVWGLSRCGHLQEARVLFHEMIGR----GILPD-EILCISLLKK 229 (257)
Q Consensus 165 ~~~~a~~~~~~~~~~----~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~ 229 (257)
|+++|.-+..+..+. ++. |. ...-.+.-++...|....|.+.-++..+. |-.+. ......+.+.
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999888776655432 221 11 12233444566778877777777766543 42222 2344566777
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 041259 230 HYERGNMDEAIELQNEMM 247 (257)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~ 247 (257)
|...|+.+.|+.-|++..
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 888899888888777654
No 276
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.98 E-value=0.3 Score=38.09 Aligned_cols=238 Identities=18% Similarity=0.126 Sum_probs=144.7
Q ss_pred ChhhHHHHHH--HHHhcCChhhHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCChHHHHHHHHHH--Hh--cCCc-
Q 041259 9 DLPLYGTIIW--GLCIESKFEDSKLLLSEMKENGLTANT----VICTTLMDAYFKAGEPSEALSLLDEM--LD--SRIE- 77 (257)
Q Consensus 9 ~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~~~~- 77 (257)
+..++...+. -+++.|+......+|+...+.|. -|. .+|..|..+|.-.+++++|+++...= +. .|-+
T Consensus 14 ~~SCleLalEGERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl 92 (639)
T KOG1130|consen 14 DRSCLELALEGERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL 92 (639)
T ss_pred hhHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh
Confidence 3345554443 47899999999999999999873 333 35777778888888999998875321 11 1111
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHhcc----cCCC-CCCHHHHHHHHHHHHhcCc--------------------HH
Q 041259 78 VTVVTFCVLIDGLCKSGLVREAIDYFGRMP----DFGL-HPNVAVYTALIDGLCKKNC--------------------IE 132 (257)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~ 132 (257)
-...+...|.+.+--.|.+++|.-...+-. +.|- ......+-.+...|...|+ ++
T Consensus 93 GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 93 GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 123344556666667788888876543322 2221 1122344455666655442 23
Q ss_pred HHHHHHHHhh----hCCC-CCCHHHHHHHHHHHHcccCHHHHHHHHHHH----HHcCCC-ccHHHHHHHHHHHHhcCcHH
Q 041259 133 RARNLFDEMP----KRDM-IPDTTAYTALIDGYLKHESFKEALNLKNRM----TEVGVD-LDLNAYTSLVWGLSRCGHLQ 202 (257)
Q Consensus 133 ~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~li~~~~~~~~~~ 202 (257)
.|.++|.+=. +.|- ...-..|..|-..|.-.|+++.|....+.- .+.|-+ .....+..+..++.-.|+++
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe 252 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFE 252 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccH
Confidence 3444443311 1110 012235666666677789999998765532 233322 12356788888999999999
Q ss_pred HHHHHHHHHHhC----CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 203 EARVLFHEMIGR----GI-LPDEILCISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 203 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
.|.+.++..... |- .....+..+|...|.-..++++|+.++.+-+
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 999988765532 21 2234556678888888889999999887644
No 277
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=2.2 Score=36.19 Aligned_cols=110 Identities=18% Similarity=0.215 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 041259 117 VYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLS 196 (257)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 196 (257)
+.+--+.-+...|+..+|.++-.+.. .||...|-.-+.++...++|++.+++-+..+ ++.-|.-++.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34445556667788888888777664 3577788888888999999988777654432 3566788899999
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041259 197 RCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNE 245 (257)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (257)
+.|+.++|.+++.+.... . -...+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 999999998887654321 1 467778888888888776543
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.81 E-value=0.77 Score=30.94 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=9.8
Q ss_pred HHhcCcHHHHHHHHHHhhhC
Q 041259 125 LCKKNCIERARNLFDEMPKR 144 (257)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~ 144 (257)
+...|++.+|..+|+++...
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 34445555555555554443
No 279
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.69 E-value=1.6 Score=34.07 Aligned_cols=185 Identities=16% Similarity=0.126 Sum_probs=119.1
Q ss_pred HhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CcccHHH--HHHH-----------
Q 041259 21 CIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSR-IEVTVVT--FCVL----------- 86 (257)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l----------- 86 (257)
-+.|+.+.|...-+..-... +.-...+...+...+..|+|+.|+++++.-.... +.++..- -..|
T Consensus 165 qr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 45688888888887776543 3445678899999999999999999998876542 3444321 1111
Q ss_pred --------------------------HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 041259 87 --------------------------IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDE 140 (257)
Q Consensus 87 --------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (257)
..++.+.|+..++-++++.+-+. .|....+. +..+.+.|+.. +.-+++
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~--lY~~ar~gdta--~dRlkR 317 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIAL--LYVRARSGDTA--LDRLKR 317 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHH--HHHHhcCCCcH--HHHHHH
Confidence 23344556666666666666554 34444433 23344555532 222222
Q ss_pred hhhC-CCCC-CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhC
Q 041259 141 MPKR-DMIP-DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSR-CGHLQEARVLFHEMIGR 214 (257)
Q Consensus 141 ~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~ 214 (257)
..+. ..+| +......+.++....|++..|..--+.... ..|....|..|.+.-.- .|+-.++...+.+.++.
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 2110 1122 566777788888899999988877666655 45778888888776554 49999999999888875
No 280
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.69 E-value=1.9 Score=34.81 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC-ccHHHHHHHHH
Q 041259 116 AVYTALIDGLCKKNCIERARNLFDEMPKRDMI-PDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVD-LDLNAYTSLVW 193 (257)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~ 193 (257)
.+-..+..++.+.|+.++|.+.++++.+.... .+......|+.++...+.+.++..++.+-.+...+ --...|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 33345667777889999999999988765332 24456778888888999999998888887554322 22345555443
Q ss_pred H
Q 041259 194 G 194 (257)
Q Consensus 194 ~ 194 (257)
.
T Consensus 340 k 340 (539)
T PF04184_consen 340 K 340 (539)
T ss_pred H
Confidence 3
No 281
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.63 E-value=0.038 Score=36.65 Aligned_cols=83 Identities=13% Similarity=0.198 Sum_probs=38.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcH
Q 041259 52 MDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCI 131 (257)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (257)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .....++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcchH
Confidence 344444555555555555555443334455555555666555554555555442211 1112344444555555
Q ss_pred HHHHHHHHHh
Q 041259 132 ERARNLFDEM 141 (257)
Q Consensus 132 ~~a~~~~~~~ 141 (257)
+++.-++.++
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 5555544443
No 282
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=2.6 Score=35.76 Aligned_cols=87 Identities=15% Similarity=0.094 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041259 151 TAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKH 230 (257)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (257)
-+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++.+++-+... ++.-|...+.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344555556667788888888766543 3688888888999999999988777654332 366788899999
Q ss_pred HhcCCHHHHHHHHHHHH
Q 041259 231 YERGNMDEAIELQNEMM 247 (257)
Q Consensus 231 ~~~g~~~~a~~~~~~m~ 247 (257)
.+.|+.++|.+++.+..
T Consensus 755 ~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HhcccHHHHhhhhhccC
Confidence 99999999999887653
No 283
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.52 E-value=0.028 Score=37.26 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=63.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC
Q 041259 15 TIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSG 94 (257)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (257)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 467778888999999999999998776677889999999999998888888887721 1122345667777777
Q ss_pred cHHHHHHHHHhcc
Q 041259 95 LVREAIDYFGRMP 107 (257)
Q Consensus 95 ~~~~a~~~~~~~~ 107 (257)
.++++.-++.++.
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 7777777776653
No 284
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.23 E-value=1.7 Score=32.57 Aligned_cols=164 Identities=15% Similarity=0.131 Sum_probs=98.0
Q ss_pred HHhcCChHHHHHHHHHHHhcC--CcccHH-----HHHHHHHHHHhcC-cHHHHHHHHHhcccC--------CCCCCH---
Q 041259 55 YFKAGEPSEALSLLDEMLDSR--IEVTVV-----TFCVLIDGLCKSG-LVREAIDYFGRMPDF--------GLHPNV--- 115 (257)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~-----~~~~ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 115 (257)
..+.|+.+.|..++.+..... ..|+.. .+..+.......+ +++.|..++++..+. ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999887542 233221 1222233334455 888887777665322 122332
Q ss_pred --HHHHHHHHHHHhcCcHH---HHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHH
Q 041259 116 --AVYTALIDGLCKKNCIE---RARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTS 190 (257)
Q Consensus 116 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (257)
.+...++.+|...+..+ +|..+++.+...... .+.++..-+..+.+.++.+.+.+.+.+|...- ......+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 45666778888776654 566666666554333 35566566777777899999999999998863 213344444
Q ss_pred HHHHH---HhcCcHHHHHHHHHHHHhCCCCCcHH
Q 041259 191 LVWGL---SRCGHLQEARVLFHEMIGRGILPDEI 221 (257)
Q Consensus 191 li~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (257)
.+..+ .... ...+...+..+....+.|...
T Consensus 161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChh
Confidence 44443 4433 455666666666554555543
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.19 E-value=1.1 Score=30.19 Aligned_cols=120 Identities=16% Similarity=0.051 Sum_probs=70.1
Q ss_pred HHHHHHHH---HHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 041259 116 AVYTALID---GLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLV 192 (257)
Q Consensus 116 ~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 192 (257)
.+.+.|+. .-.+.++.+.+..++..+.-..+. ....-..-...+...|+|.+|..+|+++.+.. |....-..|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHH
Confidence 34445544 445678999999999988765332 22222233445678999999999999987764 3334445555
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 041259 193 WGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIE 241 (257)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 241 (257)
..|.....-..-...-+++.+.+-.|+. ..++..+....+...|..
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 5555444434444445556665433333 235566655555544443
No 286
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.15 E-value=0.059 Score=25.65 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhcCcHHHH
Q 041259 185 LNAYTSLVWGLSRCGHLQEA 204 (257)
Q Consensus 185 ~~~~~~li~~~~~~~~~~~a 204 (257)
...|..+...+...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444444333
No 287
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.09 E-value=0.7 Score=28.04 Aligned_cols=45 Identities=13% Similarity=0.275 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHH
Q 041259 133 RARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMT 177 (257)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (257)
++.+-++.+...+..|++....+.+++|.+.+++..|.++++..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555555444
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.08 E-value=0.092 Score=24.97 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=11.1
Q ss_pred ccHHHHHHHHHHHHhcCChHHH
Q 041259 43 ANTVICTTLMDAYFKAGEPSEA 64 (257)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a 64 (257)
-+...|+.+...+...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3444555555555555555544
No 289
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.03 E-value=1.4 Score=30.90 Aligned_cols=78 Identities=12% Similarity=-0.072 Sum_probs=53.1
Q ss_pred HcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC---CCCCcHHHHHHHHHHHHhcCCHH
Q 041259 161 LKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR---GILPDEILCISLLKKHYERGNMD 237 (257)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~ 237 (257)
.+.|+ +.|.+.|-.+...+.--++.....+...|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 566777776766655445555555655555 55778888888777754 33667888888888888888888
Q ss_pred HHH
Q 041259 238 EAI 240 (257)
Q Consensus 238 ~a~ 240 (257)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 764
No 290
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.76 E-value=3.5 Score=34.45 Aligned_cols=178 Identities=16% Similarity=0.089 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHhcCCcccHHHHHHHHH----H-HHhcCcHHHHHHHHHhccc-------CCCCCCHHHHHHHHHHHHhc
Q 041259 61 PSEALSLLDEMLDSRIEVTVVTFCVLID----G-LCKSGLVREAIDYFGRMPD-------FGLHPNVAVYTALIDGLCKK 128 (257)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~----~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 128 (257)
...+.++++...+.|.. ..-..+.. + +....|.+.|..+|+...+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~---~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS---EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcch---HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 46788888888877632 22222222 2 4456789999999998866 44 222445566666663
Q ss_pred C-----cHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH----hc
Q 041259 129 N-----CIERARNLFDEMPKRDMIPDTTAYTALIDGYLK-HESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLS----RC 198 (257)
Q Consensus 129 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~ 198 (257)
. +.+.|..++......|.. +...+...+..... ..+...|.++|....+.|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 2 678899999998887754 55444444433333 35788999999999998853 22222322222 33
Q ss_pred CcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 199 GHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
.+...|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+.+.|
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 47889999999999887 3332222223333444 77777777666666554
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.70 E-value=5.1 Score=36.06 Aligned_cols=81 Identities=20% Similarity=0.211 Sum_probs=41.9
Q ss_pred HHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHH
Q 041259 123 DGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQ 202 (257)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (257)
..+.....+++|--.|+..-+. ..-+.+|..+|+|.+|+.+..++...... -..+-..|+.-+...++.-
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccch
Confidence 3334455555655555443321 22345666667777777666655432110 1112245566666666666
Q ss_pred HHHHHHHHHHh
Q 041259 203 EARVLFHEMIG 213 (257)
Q Consensus 203 ~a~~~~~~~~~ 213 (257)
+|-++..+...
T Consensus 1017 eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1017 EAAKILLEYLS 1027 (1265)
T ss_pred hHHHHHHHHhc
Confidence 66666655554
No 292
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.46 E-value=5.6 Score=35.81 Aligned_cols=81 Identities=22% Similarity=0.224 Sum_probs=42.7
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHH--HHHHHHHHHH
Q 041259 154 TALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEI--LCISLLKKHY 231 (257)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 231 (257)
.+....+.....+++|.-+|+..-+ ..-.+.+|...|+|.+|..+..++... -+.. +-..|+.-+.
T Consensus 943 ~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 943 EAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHH
Confidence 3333444455666666666654322 123456667777777777776655421 1211 1244555555
Q ss_pred hcCCHHHHHHHHHHH
Q 041259 232 ERGNMDEAIELQNEM 246 (257)
Q Consensus 232 ~~g~~~~a~~~~~~m 246 (257)
..+++-+|-++..+-
T Consensus 1011 e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEY 1025 (1265)
T ss_pred HcccchhHHHHHHHH
Confidence 666666665555543
No 293
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.40 E-value=0.3 Score=24.06 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 221 ILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566667777777777777777776654
No 294
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.39 E-value=3.6 Score=33.33 Aligned_cols=85 Identities=16% Similarity=0.086 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc-HHHHHHHH
Q 041259 150 TTAYTALIDGYLKHESFKEALNLKNRMTEVGVD-LDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD-EILCISLL 227 (257)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 227 (257)
..+-..+..+.-+.|+.++|.+.++++.+.... -+......|+.++...+.+.++..++.+..+...+.+ ...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 333445666777899999999999999875432 2445788899999999999999999998765433222 34566655
Q ss_pred HHHHhcC
Q 041259 228 KKHYERG 234 (257)
Q Consensus 228 ~~~~~~g 234 (257)
-.+-..+
T Consensus 339 LkaRav~ 345 (539)
T PF04184_consen 339 LKARAVG 345 (539)
T ss_pred HHHHhhc
Confidence 4433333
No 295
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.34 E-value=2.8 Score=33.80 Aligned_cols=118 Identities=12% Similarity=0.081 Sum_probs=77.9
Q ss_pred hcCcHHHHHH-HHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHH
Q 041259 127 KKNCIERARN-LFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEAR 205 (257)
Q Consensus 127 ~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 205 (257)
..|+.-.|.+ ++..+....-.|+.....+. .+...|+++.+.+.+...... +.....+...+++.....|+++.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 4566655544 44444444444554444433 345678999998888766543 3345677888888889999999999
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 206 VLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.+-+.|+...+. ++..........-..|-++++.-.|+++..
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 998888876554 444444334444556788888888888764
No 296
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.33 E-value=2.3 Score=30.98 Aligned_cols=195 Identities=14% Similarity=0.089 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCccc------HHHHHHHHHHHHhcCcHHHHHHHHHhcc----cCCCCCCH
Q 041259 46 VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVT------VVTFCVLIDGLCKSGLVREAIDYFGRMP----DFGLHPNV 115 (257)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~ 115 (257)
..|.....+|....++++|...+.+..+- .+-+ ..+|...+-..-....+.++..++++.. +.| .|+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdt 109 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDT 109 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-Ccch
Confidence 34666667788888899888877776531 1111 2234444444445566777777777653 444 4554
Q ss_pred HHHHHHHH--HHHhcCcHHHHHHHHHHhhhC---CCC--CCHHHHHHHHHHHHcccCHHHHHHHHHHHHHc----CCCcc
Q 041259 116 AVYTALID--GLCKKNCIERARNLFDEMPKR---DMI--PDTTAYTALIDGYLKHESFKEALNLKNRMTEV----GVDLD 184 (257)
Q Consensus 116 ~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~---~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 184 (257)
..- +|-. -....-++++|++++++.... +-. --...+...-+.+.+...+++|-..+.+-... .--++
T Consensus 110 AAm-aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~ 188 (308)
T KOG1585|consen 110 AAM-ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS 188 (308)
T ss_pred HHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence 432 1111 223466788888888775321 111 11234556666777777777766655432211 11112
Q ss_pred -HHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC-C--CCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041259 185 -LNAYTSLVWGLSRCGHLQEARVLFHEMIGRG-I--LPDEILCISLLKKHYERGNMDEAIELQN 244 (257)
Q Consensus 185 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 244 (257)
-..|...|-.+....++..|...++.-.+-+ + .-+..+...|+.+| ..|+.+++.+++.
T Consensus 189 ~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 189 QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 1345556666777789999999998754431 1 23566778888765 5788888776653
No 297
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.24 E-value=2.2 Score=35.27 Aligned_cols=150 Identities=15% Similarity=0.078 Sum_probs=94.3
Q ss_pred hcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHH
Q 041259 22 IESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAID 101 (257)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (257)
-.|+++.|..++..+. ....+.+++.+.+.|-.++|+++- +|+.. -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHH
Confidence 3566666665443322 334456667777777777776542 12111 1223345688888877
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCC
Q 041259 102 YFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGV 181 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (257)
+..+. .+..-|..|..+....+++..|.+.|..... |..|+-.+...|+.+....+-....+.|.
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 76654 3556788888888888888888888876543 34566667777777766666666666553
Q ss_pred CccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 041259 182 DLDLNAYTSLVWGLSRCGHLQEARVLFHEM 211 (257)
Q Consensus 182 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 211 (257)
. |...-++...|+++++.+++..-
T Consensus 724 ~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c------chHHHHHHHcCCHHHHHHHHHhc
Confidence 2 23334556778888888776543
No 298
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.19 E-value=0.36 Score=23.75 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 186 NAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888877764
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.12 E-value=0.4 Score=22.41 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 221 ILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
..|..+..++...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777777665
No 300
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.07 E-value=1.3 Score=27.28 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041259 29 SKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEML 72 (257)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (257)
..+-+..+....+.|++....+.+++|.+.+++..|.++++-++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444445555555555555555555555555555544
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.04 E-value=0.43 Score=22.31 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 041259 48 CTTLMDAYFKAGEPSEALSLLDEMLD 73 (257)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (257)
|..+..++...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444444444444444444444443
No 302
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.04 E-value=4.6 Score=33.59 Aligned_cols=132 Identities=18% Similarity=0.102 Sum_probs=93.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLC 91 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (257)
.-+.+++.+.+.|-.++|+++ .+|... -.....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 456677777777777777654 233322 1234557889999988866553 5577999999999
Q ss_pred hcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHH
Q 041259 92 KSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALN 171 (257)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (257)
+.+++..|.+.|....+ |..|+-.+...|+.+....+-....+.|.. | ....+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHH
Confidence 99999999999987764 456777788888877666666666666543 3 33445677899999998
Q ss_pred HHHHH
Q 041259 172 LKNRM 176 (257)
Q Consensus 172 ~~~~~ 176 (257)
++..-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 87653
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.00 E-value=0.42 Score=22.21 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 222 LCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.+..+...+...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666777777777777777777664
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.97 E-value=2.3 Score=29.95 Aligned_cols=80 Identities=16% Similarity=0.029 Sum_probs=58.0
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhccc---CCCCCCHHHHHHHHHHHHhcCc
Q 041259 54 AYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPD---FGLHPNVAVYTALIDGLCKKNC 130 (257)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~ 130 (257)
...+.|+ +.|.+.|-++...+.--++.....|...|. ..|.+++..++.+..+ .+-.+|+..+..|++.+.+.++
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455555 678888888887765556666666666665 5678888888877643 2335788899999999999999
Q ss_pred HHHHH
Q 041259 131 IERAR 135 (257)
Q Consensus 131 ~~~a~ 135 (257)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 98874
No 305
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.84 E-value=3.1 Score=31.12 Aligned_cols=136 Identities=9% Similarity=0.114 Sum_probs=74.8
Q ss_pred cHHHHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-cCc-HHHHHHHHHHhh-hCCCCCCHHHHHHHHHHHHcccCHHHHH
Q 041259 95 LVREAIDYFGRMPD-FGLHPNVAVYTALIDGLCK-KNC-IERARNLFDEMP-KRDMIPDTTAYTALIDGYLKHESFKEAL 170 (257)
Q Consensus 95 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (257)
.+.+|+++|+.... ..+--|..+...+++.... .+. ...-.++.+-+. ..+..++..+...++..++..++|.+..
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666663221 2234555566666665554 111 111122222222 2224456666777777777777777777
Q ss_pred HHHHHHHHc-CCCccHHHHHHHHHHHHhcCcHHHHHHHHHH-----HHhCCCCCcHHHHHHHHHHH
Q 041259 171 NLKNRMTEV-GVDLDLNAYTSLVWGLSRCGHLQEARVLFHE-----MIGRGILPDEILCISLLKKH 230 (257)
Q Consensus 171 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 230 (257)
+++...... +..-|...|..+|+.....|+..-...+.++ +.+.++..+...-.++-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 777766554 4455667777777777777777766666553 22345555555555444443
No 306
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.73 E-value=1.7 Score=31.03 Aligned_cols=51 Identities=20% Similarity=0.151 Sum_probs=21.7
Q ss_pred HHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHH
Q 041259 123 DGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKN 174 (257)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (257)
+.+.+.+.+.+++...++-.+..+. +..+-..+++.++-.|+|++|..-++
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHH
Confidence 3334444444444444443333222 33334444444444444444444433
No 307
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.67 E-value=0.3 Score=24.82 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=18.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 226 LLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 6677777888888888887777544
No 308
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.58 E-value=1.6 Score=31.17 Aligned_cols=79 Identities=16% Similarity=0.061 Sum_probs=58.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCcccHHHHHHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS--RIEVTVVTFCVLIDG 89 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~ 89 (257)
|.+..++.+.+.+.+.+++...++=.+.. |.|...-..++..++-.|++++|..-++-.-.. ...+....|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45566788888999999999888777664 556777788889999999999998877766543 233456677777765
Q ss_pred HH
Q 041259 90 LC 91 (257)
Q Consensus 90 ~~ 91 (257)
-.
T Consensus 82 ea 83 (273)
T COG4455 82 EA 83 (273)
T ss_pred HH
Confidence 43
No 309
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.49 E-value=2.9 Score=29.93 Aligned_cols=66 Identities=14% Similarity=-0.031 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCC
Q 041259 79 TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRD 145 (257)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (257)
-+.+||-+.--+...|+++.|.+.|+...+.+.. ...+...-.-.+.-.|++.-|.+=+-..-+.+
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhcC
Confidence 3566777777777778888888888777665411 11121111122233566666665555554443
No 310
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.44 E-value=2.9 Score=29.90 Aligned_cols=163 Identities=18% Similarity=0.105 Sum_probs=95.5
Q ss_pred Ccc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHH
Q 041259 42 TAN-TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTA 120 (257)
Q Consensus 42 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (257)
.|+ +..||.|.-.+...|+++.|.+.|+...+....-+-...|.-|. +.-.|++..|.+-+.+.-+.+ +.|+ |.+
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D-~~DP--fR~ 170 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDD-PNDP--FRS 170 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcC-CCCh--HHH
Confidence 344 56788888888999999999999999998754333233333333 334578888887666665443 2222 222
Q ss_pred H-HHHHHhcCcHHHHHHHHH-HhhhCCCCCCHHHHHHHHHH-HHcccCHHHHHHHHHHHHHcCC------CccHHHHHHH
Q 041259 121 L-IDGLCKKNCIERARNLFD-EMPKRDMIPDTTAYTALIDG-YLKHESFKEALNLKNRMTEVGV------DLDLNAYTSL 191 (257)
Q Consensus 121 l-~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l 191 (257)
+ +-.--..-++.+|..-+. +.... +..-|...|-. |...=..+. +++.+....- ..=..||-.+
T Consensus 171 LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 171 LWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEET---LMERLKADATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHH---HHHHHHhhccchHHHHHHHHHHHHHH
Confidence 2 222234456677765443 33333 44455544333 322222222 2333322111 1124678888
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCC
Q 041259 192 VWGLSRCGHLQEARVLFHEMIGRG 215 (257)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~~~~~~ 215 (257)
.+.+...|+.++|..+|+-.+..+
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHHh
Confidence 999999999999999999887753
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.42 E-value=0.54 Score=21.82 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 041259 48 CTTLMDAYFKAGEPSEALSLLDEMLD 73 (257)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (257)
|..+..++...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 312
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.36 E-value=2.2 Score=28.35 Aligned_cols=54 Identities=7% Similarity=0.059 Sum_probs=36.9
Q ss_pred HHhcCcHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcC
Q 041259 125 LCKKNCIERARNLFDEMPKRDMI-PDTTAYTALIDGYLKHESFKEALNLKNRMTEVG 180 (257)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (257)
-...++++++..+++.+.-..+. +...++.. ..+...|+|++|..+|+++.+.+
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 34578888888888887654322 12333333 34577889999999999888765
No 313
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=92.24 E-value=3.7 Score=30.56 Aligned_cols=89 Identities=10% Similarity=-0.027 Sum_probs=40.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh--
Q 041259 50 TLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK-- 127 (257)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 127 (257)
.-|.+++..++|.+++.+.-+..+.--+..+.+...-|-.|.+.+++..+.++-..-....-.-+...|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 345556666666666555544433221222334444455555556555555444332221101122224444443332
Q ss_pred ---cCcHHHHHHHH
Q 041259 128 ---KNCIERARNLF 138 (257)
Q Consensus 128 ---~~~~~~a~~~~ 138 (257)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 46666665555
No 314
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.22 E-value=5.1 Score=32.12 Aligned_cols=52 Identities=17% Similarity=0.059 Sum_probs=42.9
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 195 LSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
+..+|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++..+.-
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 4567888888876666665 689999999888899999999999999987643
No 315
>PHA02875 ankyrin repeat protein; Provisional
Probab=91.94 E-value=4.3 Score=32.42 Aligned_cols=80 Identities=9% Similarity=0.099 Sum_probs=39.9
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCccHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHH--HHHHHHHHHHhc
Q 041259 18 WGLCIESKFEDSKLLLSEMKENGLTANTVI--CTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVV--TFCVLIDGLCKS 93 (257)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~ 93 (257)
...++.|+.+-+ +.+.+.|..|+... ..+.++..+..|+.+- .+.+.+.|..|+.. .....+...+..
T Consensus 7 ~~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 334456665444 44445565554432 2344455566666543 34444455444321 112334555566
Q ss_pred CcHHHHHHHHHh
Q 041259 94 GLVREAIDYFGR 105 (257)
Q Consensus 94 ~~~~~a~~~~~~ 105 (257)
|+.+.+..+++.
T Consensus 79 g~~~~v~~Ll~~ 90 (413)
T PHA02875 79 GDVKAVEELLDL 90 (413)
T ss_pred CCHHHHHHHHHc
Confidence 777776666653
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.65 E-value=0.75 Score=21.38 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 222 LCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666677777777777777776654
No 317
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.45 E-value=5.5 Score=30.97 Aligned_cols=201 Identities=9% Similarity=0.022 Sum_probs=115.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHH----HHHHHcC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCcc---cHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLL----SEMKENG-LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS-RIEV---TVVT 82 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~----~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~ 82 (257)
+|..+..+.++.|.+++++..- +...+.. -..--..|..+.+++-+..++.+++.+-..-... |..| .-..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4555666667777776654422 1111110 0011234555566666666666666665554432 2222 1133
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhcccCCC-----CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh----CCCCCCHHHH
Q 041259 83 FCVLIDGLCKSGLVREAIDYFGRMPDFGL-----HPNVAVYTALIDGLCKKNCIERARNLFDEMPK----RDMIPDTTAY 153 (257)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 153 (257)
..++..++...+.++++++.|+...+... .....++..|-..|.+..|+++|.-+.....+ .++..-..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 44566777888889999998887753211 12345788889999999999998766655422 2322111222
Q ss_pred H-----HHHHHHHcccCHHHHHHHHHHHHH----cCCCc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 041259 154 T-----ALIDGYLKHESFKEALNLKNRMTE----VGVDL-DLNAYTSLVWGLSRCGHLQEARVLFHEMI 212 (257)
Q Consensus 154 ~-----~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 212 (257)
. .+.-++...|...+|.+.-++..+ .|-++ -......+...|...|+.+.|+.-++...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 233345566777777776665543 44322 23345667788889999998888777654
No 318
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=91.43 E-value=2.4 Score=27.26 Aligned_cols=44 Identities=7% Similarity=0.067 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 171 NLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
+-+..+....+.|++......+++|.+.+++..|.++|+.++.+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444444555566666666666666666666666666655543
No 319
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=91.39 E-value=3 Score=27.73 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=76.7
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcC-----Ccc
Q 041259 6 IKADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTV--ICTTLMDAYFKAGEPSEALSLLDEMLDSR-----IEV 78 (257)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~ 78 (257)
+.++..+|...+.. ....|.+.+..++.. ..+.++.-....+++...+.+++.+.... -..
T Consensus 10 ~~~nL~~w~~fi~~------------~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~ 77 (145)
T PF13762_consen 10 VLANLEVWKTFINS------------HLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWL 77 (145)
T ss_pred hhhhHHHHHHHHHH------------HHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhc
Confidence 34455555555543 334455555555443 35667776677778887777777764221 123
Q ss_pred cHHHHHHHHHHHHhcCc-HHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHH
Q 041259 79 TVVTFCVLIDGLCKSGL-VREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIER 133 (257)
Q Consensus 79 ~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (257)
+...|..++.+..+..- ---+..+|..+++.+.+++...|..++.++.+-...+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 66789999999876665 44567788888887788999999999998887644433
No 320
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.22 E-value=0.45 Score=20.86 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 041259 225 SLLKKHYERGNMDEAIELQN 244 (257)
Q Consensus 225 ~l~~~~~~~g~~~~a~~~~~ 244 (257)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34555555666666655543
No 321
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.04 E-value=8.9 Score=32.61 Aligned_cols=197 Identities=16% Similarity=0.130 Sum_probs=114.1
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHH-hcCCcccH--HHHHHHHHHHH-hcCcHHHHHHHHHhcccCCCCCCHH-
Q 041259 42 TANTVICTTLMDAYFKAGEPSEALSLLDEML-DSRIEVTV--VTFCVLIDGLC-KSGLVREAIDYFGRMPDFGLHPNVA- 116 (257)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~--~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~- 116 (257)
+.+...|..||.. |++.++.+. +..++|.. .++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 27 ~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 3455667777765 455566555 33444433 34455666665 6788999999998774432223222
Q ss_pred ----HHHHHHHHHHhcCcHHHHHHHHHHhhhC----CCCCCHHHHHHH-HHHHHcccCHHHHHHHHHHHHHcC---CCcc
Q 041259 117 ----VYTALIDGLCKKNCIERARNLFDEMPKR----DMIPDTTAYTAL-IDGYLKHESFKEALNLKNRMTEVG---VDLD 184 (257)
Q Consensus 117 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~ 184 (257)
.-..++..+.+.+... |...+++..+. +..+-...+..+ +..+...+++..|.+.++.+...- ..|.
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 2234556666666555 88888876543 122223333333 333333479999999998876532 2344
Q ss_pred HHHHHHHHHHHH--hcCcHHHHHHHHHHHHhCC---------CCCcHHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 041259 185 LNAYTSLVWGLS--RCGHLQEARVLFHEMIGRG---------ILPDEILCISLLKKHY--ERGNMDEAIELQNEMMG 248 (257)
Q Consensus 185 ~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~ 248 (257)
..++-.++.+.. +.+..+++.+.++++.... ..|-..+|..+++.++ ..|+++.+...++++.+
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555544 4555677777777664321 1334556776776554 67887777777776643
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.84 E-value=0.63 Score=21.38 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 224 ISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 224 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
..+..++.+.|++++|.+.|+++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566777778888888888877653
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.70 E-value=3.6 Score=27.45 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=41.9
Q ss_pred HHHHHHHHH---HHhcCcHHHHHHHHHhcccCCCCCCH---HHHHHHHHHHHhcCcHHHHHHHHHHhhhCCC
Q 041259 81 VTFCVLIDG---LCKSGLVREAIDYFGRMPDFGLHPNV---AVYTALIDGLCKKNCIERARNLFDEMPKRDM 146 (257)
Q Consensus 81 ~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (257)
.+.+.|+.. -...++++++..++..|.-. .|+. .++.. ..+...|++.+|.++|+++.+.+.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCC
Confidence 344444433 34578899999998888654 3443 33333 346778999999999999988753
No 324
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=90.52 E-value=10 Score=32.40 Aligned_cols=190 Identities=15% Similarity=0.070 Sum_probs=92.7
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHH
Q 041259 41 LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTA 120 (257)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (257)
.+-+....-.+..++.+.|.-++|.+.|-+.- .| ...+..|...+++.+|.++-++..- |.+.+.-+
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq~~~l----~qv~tlia 914 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIA 914 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHH
Confidence 34455556666777777777777766653332 11 2344556666777777776655432 33222211
Q ss_pred --------------HHHHHHhcCcHHHHHHHHHHhhh----CCCCCCH----HHHHHHH-HHHH----------cccCHH
Q 041259 121 --------------LIDGLCKKNCIERARNLFDEMPK----RDMIPDT----TAYTALI-DGYL----------KHESFK 167 (257)
Q Consensus 121 --------------l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~----~~~~~l~-~~~~----------~~~~~~ 167 (257)
-|..+.+.|++-.|-+++.+|.+ ++.+|-. .+..+++ .-+. ..|..+
T Consensus 915 k~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~ 994 (1189)
T KOG2041|consen 915 KQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLE 994 (1189)
T ss_pred HHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcch
Confidence 23344455555555566655533 2222211 1112111 1111 234555
Q ss_pred HHHHHHHHHHHcC---CC----ccHHH--HHHHHHHHHhcCcHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCCHH
Q 041259 168 EALNLKNRMTEVG---VD----LDLNA--YTSLVWGLSRCGHLQEARVLFHEMIGR-GILPDEILCISLLKKHYERGNMD 237 (257)
Q Consensus 168 ~a~~~~~~~~~~~---~~----~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 237 (257)
+|..+++...-.. +. -.... |..+..--...|.++.|...--.+.+. .+-|....|..+.-+.+....+.
T Consensus 995 dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFG 1074 (1189)
T KOG2041|consen 995 DATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFG 1074 (1189)
T ss_pred hhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhh
Confidence 5555444322110 00 01223 334444455678888887776555544 45667777776666655554444
Q ss_pred HHHHHH
Q 041259 238 EAIELQ 243 (257)
Q Consensus 238 ~a~~~~ 243 (257)
..-+.|
T Consensus 1075 tCSKAf 1080 (1189)
T KOG2041|consen 1075 TCSKAF 1080 (1189)
T ss_pred hhHHHH
Confidence 433333
No 325
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.39 E-value=12 Score=32.83 Aligned_cols=226 Identities=15% Similarity=0.103 Sum_probs=120.4
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCccHH-------HHHHHHH-HHHhcCChHHHHHHHHHHHhc----CCcccHHHHHHHH
Q 041259 20 LCIESKFEDSKLLLSEMKENGLTANTV-------ICTTLMD-AYFKAGEPSEALSLLDEMLDS----RIEVTVVTFCVLI 87 (257)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll 87 (257)
....+++++|..++.++...-..|+.. .++.+-. .....|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 445788999999998887652222221 2333322 234567888888887776643 2233455666677
Q ss_pred HHHHhcCcHHHHHHHHHhcccCCCCCCHHHH---HHHH--HHHHhcCcHHHH--HHHHHHhhhC-----CC-CCCHHHHH
Q 041259 88 DGLCKSGLVREAIDYFGRMPDFGLHPNVAVY---TALI--DGLCKKNCIERA--RNLFDEMPKR-----DM-IPDTTAYT 154 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~--~~~~~~~~~~~a--~~~~~~~~~~-----~~-~~~~~~~~ 154 (257)
.+..-.|++++|..+..+..+..-..+...+ ..+. ..+...|....+ ...|...... .. .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7777789999998887766543222333333 3322 234556633322 2333332221 11 11234455
Q ss_pred HHHHHHHccc-CHHHHHHHHHHHHHcCCCccHHHH--HHHHHHHHhcCcHHHHHHHHHHHHhCCCCC----cHHHHHHHH
Q 041259 155 ALIDGYLKHE-SFKEALNLKNRMTEVGVDLDLNAY--TSLVWGLSRCGHLQEARVLFHEMIGRGILP----DEILCISLL 227 (257)
Q Consensus 155 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~ 227 (257)
.+..++.+.. ...++..-+.-.......|-.... ..++++....|+.++|...++++......+ +-..-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 5555555511 111222222222222222222222 367888889999999999999888653333 222222233
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 041259 228 KK--HYERGNMDEAIELQNE 245 (257)
Q Consensus 228 ~~--~~~~g~~~~a~~~~~~ 245 (257)
.. ....|+...+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 32 2356888887776665
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.37 E-value=1 Score=22.88 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=11.5
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHh
Q 041259 191 LVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555543
No 327
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.32 E-value=8.2 Score=31.02 Aligned_cols=137 Identities=14% Similarity=0.187 Sum_probs=77.7
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcc------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHH--HH
Q 041259 20 LCIESKFEDSKLLLSEMKENGLTAN------TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDG--LC 91 (257)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~ 91 (257)
+-+.+++.+|.++|.+..+.. ..+ ...-+.++++|.. ++.+.....+..+.+.. | ...|-.+..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 346789999999999887652 222 1223456666644 45566666655555431 2 2233333322 34
Q ss_pred hcCcHHHHHHHHHhcccC--CCCC------------CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhC----CCCCCHHHH
Q 041259 92 KSGLVREAIDYFGRMPDF--GLHP------------NVAVYTALIDGLCKKNCIERARNLFDEMPKR----DMIPDTTAY 153 (257)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ 153 (257)
+.+++..|.+.+..-... +..| |...=+..+.++...|++.+++.+++++... ...-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 567777777766543322 1111 1122244566777888999888888776543 233567777
Q ss_pred HHHHHHHH
Q 041259 154 TALIDGYL 161 (257)
Q Consensus 154 ~~l~~~~~ 161 (257)
+.++-.++
T Consensus 171 d~~vlmls 178 (549)
T PF07079_consen 171 DRAVLMLS 178 (549)
T ss_pred HHHHHHHh
Confidence 76544443
No 328
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.24 E-value=9 Score=31.36 Aligned_cols=179 Identities=16% Similarity=0.133 Sum_probs=117.1
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHH
Q 041259 8 ADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLI 87 (257)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (257)
.|..+.-+++..+..+..+.-+..+..+|...| -+...|..++.+|... ..++-..+|+++.+.... |...-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 366677789999999999999999999999876 6778899999999888 667888999988876543 444444455
Q ss_pred HHHHhcCcHHHHHHHHHhcccCCCC-----CCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHH
Q 041259 88 DGLCKSGLVREAIDYFGRMPDFGLH-----PNVAVYTALIDGLCKKNCIERARNLFDEMPKR-DMIPDTTAYTALIDGYL 161 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 161 (257)
.-|.+ ++.+.+..+|..+...-++ .-...|..+...- ..+.+....+...+... |...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55544 7777777777776543221 1122444443321 34566666666666543 22223344555556677
Q ss_pred cccCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 041259 162 KHESFKEALNLKNRMTEVGVDLDLNAYTSLVWG 194 (257)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 194 (257)
...++.+|.+++..+.+..-+ |..+-..++.-
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 788889998888877765432 44444444443
No 329
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.85 E-value=2 Score=24.99 Aligned_cols=48 Identities=15% Similarity=0.110 Sum_probs=29.1
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 041259 197 RCGHLQEARVLFHEMIGRGILPD--EILCISLLKKHYERGNMDEAIELQN 244 (257)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~ 244 (257)
..++.++|+..|...++.-..|. ..++..++.+++..|++.+++++-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777665522221 2355667777777777777666543
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.69 E-value=1.2 Score=20.60 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041259 47 ICTTLMDAYFKAGEPSEALSLLDEMLD 73 (257)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (257)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555543
No 331
>PHA02875 ankyrin repeat protein; Provisional
Probab=89.40 E-value=9.6 Score=30.47 Aligned_cols=196 Identities=12% Similarity=0.016 Sum_probs=92.1
Q ss_pred CCCCCCChhh--HHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCcc
Q 041259 3 GKNIKADLPL--YGTIIWGLCIESKFEDSKLLLSEMKENGLTANTV--ICTTLMDAYFKAGEPSEALSLLDEMLDSRIEV 78 (257)
Q Consensus 3 ~~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 78 (257)
+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++ .|...
T Consensus 23 ~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~ 94 (413)
T PHA02875 23 DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFA 94 (413)
T ss_pred HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCcc
Confidence 3455555432 334555666777765 445555666544432 12234556677888776655554 32211
Q ss_pred cHH---HHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHH--HHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHH
Q 041259 79 TVV---TFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAV--YTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAY 153 (257)
Q Consensus 79 ~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (257)
+.. .-.+.+...+..|+.+-+..+++ .|..|+... -.+.+...+..|+.+-+..+++.-...+.. +..-.
T Consensus 95 ~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~----~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~ 169 (413)
T PHA02875 95 DDVFYKDGMTPLHLATILKKLDIMKLLIA----RGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIE-DCCGC 169 (413)
T ss_pred cccccCCCCCHHHHHHHhCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCC
Confidence 110 01223444455677655544443 343333211 123445556678877666555443221111 22222
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcH
Q 041259 154 TALIDGYLKHESFKEALNLKNRMTEVGVDLDLNA---YTSLVWGLSRCGHLQEARVLFHEMIGRGILPDE 220 (257)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (257)
+.+. ..+..|+.+- .+.+.+.|..|+... ....+...+..|+.+- .+.+.+.|..++.
T Consensus 170 TpL~-~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll~~gad~n~ 230 (413)
T PHA02875 170 TPLI-IAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFIKRGADCNI 230 (413)
T ss_pred CHHH-HHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHHHCCcCcch
Confidence 2222 3344566554 344555665554321 1234444456666644 3444556665543
No 332
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.32 E-value=6 Score=28.01 Aligned_cols=87 Identities=20% Similarity=0.140 Sum_probs=41.8
Q ss_pred HhcCcHHHHHHHHHhcccCCCCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccC
Q 041259 91 CKSGLVREAIDYFGRMPDFGLHPN-----VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHES 165 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (257)
...|++++|..-|...+..- ++. ...|..-..++.+.+.++.|+.--...++.++. .......-..+|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhh
Confidence 34556666665555554432 111 123333334555556666655555555444322 22222222345555566
Q ss_pred HHHHHHHHHHHHHc
Q 041259 166 FKEALNLKNRMTEV 179 (257)
Q Consensus 166 ~~~a~~~~~~~~~~ 179 (257)
++.|+.=|+.+.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666554
No 333
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.23 E-value=7.7 Score=29.13 Aligned_cols=125 Identities=14% Similarity=0.187 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHc-cc-CHHHHHHHHHHHHH-cCCCccHHHHHHHHH
Q 041259 118 YTALIDGLCKKNCIERARNLFDEMPK-RDMIPDTTAYTALIDGYLK-HE-SFKEALNLKNRMTE-VGVDLDLNAYTSLVW 193 (257)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~li~ 193 (257)
|..|+. ++....+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+-+.. .+..++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 444443 34456778888884322 2344577888888877765 22 33333344444443 345678889999999
Q ss_pred HHHhcCcHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041259 194 GLSRCGHLQEARVLFHEMIGR-GILPDEILCISLLKKHYERGNMDEAIELQNE 245 (257)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (257)
.+++.+++.+-.++++..... +..-|...|..++....+.|+..-..++.++
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 999999999999999988765 5666889999999999999999888877764
No 334
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.81 E-value=4.3 Score=31.25 Aligned_cols=89 Identities=15% Similarity=0.033 Sum_probs=52.6
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHH
Q 041259 19 GLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVRE 98 (257)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (257)
-|.+.|.+++|++.|....... +.+..++..-..+|.+..++..|+.=....+... ..-...|..-+.+-...|...+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 3566777888887777766542 3377777777777777777776666555554432 1123344444444444556666
Q ss_pred HHHHHHhcccC
Q 041259 99 AIDYFGRMPDF 109 (257)
Q Consensus 99 a~~~~~~~~~~ 109 (257)
|.+-++...+.
T Consensus 184 AKkD~E~vL~L 194 (536)
T KOG4648|consen 184 AKKDCETVLAL 194 (536)
T ss_pred HHHhHHHHHhh
Confidence 66655555543
No 335
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.48 E-value=13 Score=30.86 Aligned_cols=187 Identities=13% Similarity=0.016 Sum_probs=116.7
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHH
Q 041259 7 KADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVL 86 (257)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (257)
+++..+|..-+..-.+.|+++.+.-+|+...-- ...=...|-..+.-....|+.+-|..++....+-..+-.+.+--.-
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 346678888888889999999999988887632 1122344555555556668888888877766654333333332222
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHH-HHHHHHHHHHhcCcHHHHH---HHHHHhhhCCCCCCHHHHHHHH----H
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVA-VYTALIDGLCKKNCIERAR---NLFDEMPKRDMIPDTTAYTALI----D 158 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~----~ 158 (257)
....-..|+...|..+++.+...- |+.. .-..-+....+.|..+.+. .++........ +......+. +
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFAR 448 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHH
Confidence 333445689999999999887653 4432 3333455666778887777 44443333221 222222222 1
Q ss_pred -HHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 041259 159 -GYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCG 199 (257)
Q Consensus 159 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 199 (257)
.+.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 223467888999999988876 4567777888887776655
No 336
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.37 E-value=7.2 Score=27.67 Aligned_cols=92 Identities=20% Similarity=0.154 Sum_probs=56.9
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCccc-----HHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 041259 54 AYFKAGEPSEALSLLDEMLDSRIEVT-----VVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKK 128 (257)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (257)
-+.+.|++++|..-|...+..- ++. ...|..-..++.+.+.++.|..-....++.+ +........-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 4556777888877777777652 222 2334444566677777777777776666654 22222333334567777
Q ss_pred CcHHHHHHHHHHhhhCCCC
Q 041259 129 NCIERARNLFDEMPKRDMI 147 (257)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~ 147 (257)
..+++|+.=|+.+.+.++.
T Consensus 182 ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhHHHHHHHHHHHHHhCcc
Confidence 7788888878777776443
No 337
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.27 E-value=2.3 Score=24.79 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=8.3
Q ss_pred HHHHHHHHHcccCHHHHHH
Q 041259 153 YTALIDGYLKHESFKEALN 171 (257)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~ 171 (257)
+..++++|+..|+++++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 338
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.21 E-value=9 Score=28.64 Aligned_cols=90 Identities=16% Similarity=0.049 Sum_probs=55.0
Q ss_pred HHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc--
Q 041259 85 VLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLK-- 162 (257)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 162 (257)
.=|++++..+++.+++.+.-+.-..--+........-|-.|.+.+.+..+.++-..-....-.-+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 346888888888888776554432211223334455566788888888887777665443222233446666665544
Q ss_pred ---ccCHHHHHHHHH
Q 041259 163 ---HESFKEALNLKN 174 (257)
Q Consensus 163 ---~~~~~~a~~~~~ 174 (257)
.|.+++|+++..
T Consensus 168 LlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 168 LLPLGHFSEAEELVV 182 (309)
T ss_pred HhccccHHHHHHHHh
Confidence 588888877653
No 339
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=88.16 E-value=4.8 Score=28.29 Aligned_cols=54 Identities=15% Similarity=0.028 Sum_probs=35.3
Q ss_pred HcccCHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 161 LKHESFKEALNLKNRMTE-VGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
...++.+......+.+.+ ....|++.+|..++.++...|+.++|.++..++...
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555544444333332 124578888888888888888888888888877764
No 340
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.11 E-value=9.1 Score=28.54 Aligned_cols=176 Identities=11% Similarity=0.094 Sum_probs=99.7
Q ss_pred CCCCCCChhhHHHHHHHH-HhcCChhhHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCChHHHHHHHHHHHh---cC
Q 041259 3 GKNIKADLPLYGTIIWGL-CIESKFEDSKLLLSEMKENGLTANT---VICTTLMDAYFKAGEPSEALSLLDEMLD---SR 75 (257)
Q Consensus 3 ~~g~~~~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~ 75 (257)
+.+-+||+..=|..-..- .+..+.++|+.-|+...+....... .+...++....+.+++++....|.+++. +.
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 356678887755443322 2456788999999988775322222 3445678889999999999999888852 11
Q ss_pred C--cccHHHHHHHHHHHHhcCcHHHHHHHHHhc----ccCC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC-
Q 041259 76 I--EVTVVTFCVLIDGLCKSGLVREAIDYFGRM----PDFG-LHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMI- 147 (257)
Q Consensus 76 ~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 147 (257)
+ .-+..+.|.++.......+.+....+++.- .+.. -..=-.|-..|...|...+.+.+..++++++....-.
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 1 123455666666555544444443333321 1110 0000112234566666667777776776665432110
Q ss_pred ----------CCHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 041259 148 ----------PDTTAYTALIDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 148 ----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
--...|..=|+.|....+-.....++++...
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 0134566666777766666666667765543
No 341
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=88.08 E-value=5.3 Score=25.80 Aligned_cols=45 Identities=13% Similarity=0.321 Sum_probs=24.6
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 041259 134 ARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
..+.++.+...++.|++.....-++++.+.+|+..|.++|+.++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555443
No 342
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.01 E-value=14 Score=30.68 Aligned_cols=185 Identities=12% Similarity=0.045 Sum_probs=118.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 041259 44 NTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALID 123 (257)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (257)
+..+|..-+..-.+.|+.+.+.-+|++..-. +..-...|-..+......|+.+.|..++....+--.+....+.-.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4567888888889999999999999988642 222345666666666677999999888877665443333333222233
Q ss_pred HHHhcCcHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHcccCHHHHH---HHHHHHHHcCCCccHHHHHHHHH-----H
Q 041259 124 GLCKKNCIERARNLFDEMPKRDMIPDT-TAYTALIDGYLKHESFKEAL---NLKNRMTEVGVDLDLNAYTSLVW-----G 194 (257)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~li~-----~ 194 (257)
..-..|++..|..+++.+...- |+. ..-..-+....+.|+.+.+. .++........ +..+...+.- .
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHH
Confidence 3445789999999999998764 443 22223344556778877777 33333332211 2222222222 1
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 041259 195 LSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERG 234 (257)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (257)
+.-.++.+.|..++.++.+. .+++...|..++......+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 23457889999999999876 5667778888888766554
No 343
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.17 E-value=5.1 Score=24.68 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=26.3
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCC
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRD 145 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (257)
+..+...|++++|..+.+.+. .||...|.+|.. .+.|-.+++..-+.++..+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344555566666665555442 455555544432 34444454444444454443
No 344
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.91 E-value=9.4 Score=29.52 Aligned_cols=51 Identities=18% Similarity=0.062 Sum_probs=27.7
Q ss_pred HHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHH
Q 041259 124 GLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNR 175 (257)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (257)
-|.+.|.+++|+..|.......+- +.+++..-..+|.+...+..|+.=...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 355566666666666655443221 555555555666666555555443333
No 345
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=86.86 E-value=7.2 Score=26.03 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=44.1
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc
Q 041259 31 LLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGL 95 (257)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (257)
++...+.+.|.+++.. -..++..+...++.-.|.++++++.+.+...+..|...-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 4455666777666544 455667777777778888888888887776666666666666666654
No 346
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.59 E-value=16 Score=29.78 Aligned_cols=126 Identities=11% Similarity=0.049 Sum_probs=76.7
Q ss_pred HHHHHhcCChhhHH-HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc
Q 041259 17 IWGLCIESKFEDSK-LLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGL 95 (257)
Q Consensus 17 i~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (257)
|.-....|++-.|- +++..+......|+.. ......+...|+++.+...+....+. +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 33344556666554 4444444433233333 33334466778888888877666543 23355677788888888888
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCC
Q 041259 96 VREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDM 146 (257)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (257)
+++|..+-+-|....+ .+...........-..|-++++.-.|++....+.
T Consensus 373 ~~~a~s~a~~~l~~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 373 WREALSTAEMMLSNEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHHHhcccc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 8888888887776554 3444433333344456777888888887765443
No 347
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=86.58 E-value=3 Score=23.07 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 184 DLNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
|-.-.-.+|.++...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444455555566666666555555543
No 348
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.34 E-value=20 Score=30.63 Aligned_cols=229 Identities=13% Similarity=0.108 Sum_probs=95.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CcccHHHHHHHHHHHHh--
Q 041259 16 IIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSR-IEVTVVTFCVLIDGLCK-- 92 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~-- 92 (257)
....+.-.|.++.|.+.+-. ..+...+..++...+..|.-.+-.+... ..+.... -.|...-+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34555667889999888777 2223455655555554433222111111 3332211 11122456778888875
Q ss_pred -cCcHHHHHHHHHhcccCCCCCCHHHHHHHH-HHHHhcCcHHHHH-----------HHHHH-hhhCCCC-CCHHHH---H
Q 041259 93 -SGLVREAIDYFGRMPDFGLHPNVAVYTALI-DGLCKKNCIERAR-----------NLFDE-MPKRDMI-PDTTAY---T 154 (257)
Q Consensus 93 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-----------~~~~~-~~~~~~~-~~~~~~---~ 154 (257)
..+..+|++++--+....-+.....+...+ ......++++.-+ -++++ ..-.+.. +..... .
T Consensus 339 ~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 339 EITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIE 418 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHH
Confidence 568899999988876543222222332222 2223333322211 01111 0000111 122222 2
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-Cc-----------HHHHHHHHHHHHhCC-----CC
Q 041259 155 ALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRC-GH-----------LQEARVLFHEMIGRG-----IL 217 (257)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~-----------~~~a~~~~~~~~~~~-----~~ 217 (257)
....-+...|++++|..+|.-..+.. .-....+.++.-.... .. ...|..+.+.....+ +.
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~ 496 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVS 496 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhcc
Confidence 23334556788888888887655421 1122333333322221 11 344555555444321 11
Q ss_pred C-cHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhCCCCCC
Q 041259 218 P-DEILCISLLKK-----HYERGNMDEAIELQNEMMGRGLLSG 254 (257)
Q Consensus 218 ~-~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~~~~~~~ 254 (257)
+ ...++..|+.. +...|+++.|++.+++ .++.|.
T Consensus 497 ~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~---L~liP~ 536 (613)
T PF04097_consen 497 RKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEK---LDLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH---TT-S-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---CCCCCC
Confidence 1 23345444432 3578999999876655 456664
No 349
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.01 E-value=21 Score=30.50 Aligned_cols=183 Identities=13% Similarity=0.067 Sum_probs=105.3
Q ss_pred HHHHHHHHH-HcCCCccH--HHHHHHHHHHH-hcCChHHHHHHHHHHHhcCCcccH-----HHHHHHHHHHHhcCcHHHH
Q 041259 29 SKLLLSEMK-ENGLTANT--VICTTLMDAYF-KAGEPSEALSLLDEMLDSRIEVTV-----VTFCVLIDGLCKSGLVREA 99 (257)
Q Consensus 29 a~~~~~~~~-~~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a 99 (257)
|+..++.+. +..++|.. .++-.+...+. ...+++.|+..+++.......++. ..-..++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 455555555 33344433 34555566555 678899999999987543222222 12234567777766555 8
Q ss_pred HHHHHhcccC----CCCCCHHHHHHH-HHHHHhcCcHHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHH--cccCHHHH
Q 041259 100 IDYFGRMPDF----GLHPNVAVYTAL-IDGLCKKNCIERARNLFDEMPKRD---MIPDTTAYTALIDGYL--KHESFKEA 169 (257)
Q Consensus 100 ~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a 169 (257)
...+++..+. +..+-...|.-+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 8888776532 212223334433 333333479999999998875432 2334444545554443 45667777
Q ss_pred HHHHHHHHHcC---------CCccHHHHHHHHHHHH--hcCcHHHHHHHHHHHH
Q 041259 170 LNLKNRMTEVG---------VDLDLNAYTSLVWGLS--RCGHLQEARVLFHEMI 212 (257)
Q Consensus 170 ~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~ 212 (257)
.+.++.+.... ..|...+|..+++.++ ..|+++.+...++++.
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777664321 1345667777766554 5777777766666554
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.19 E-value=14 Score=27.90 Aligned_cols=157 Identities=15% Similarity=0.075 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh-------hh-------------------CCCCCC
Q 041259 96 VREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEM-------PK-------------------RDMIPD 149 (257)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~-------------------~~~~~~ 149 (257)
...|+++|.-+....- ...+-..++.++-...+..+|...+... +. .++.-|
T Consensus 149 s~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 4567888877765431 1223344566666666666665554332 11 133445
Q ss_pred HHHHHHHHHHHHc-ccCHHHHHHHHHHHHHcCCC----------------ccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 041259 150 TTAYTALIDGYLK-HESFKEALNLKNRMTEVGVD----------------LDLNAYTSLVWGLSRCGHLQEARVLFHEMI 212 (257)
Q Consensus 150 ~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~----------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 212 (257)
..-|...++..-. +-.++++.++.......-.+ .-..++....+.|..+|.+.+|.++.++.+
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 6666666655433 34566666666554321110 012345666788999999999999999998
Q ss_pred hCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCC
Q 041259 213 GRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG-----RGLLSGS 255 (257)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 255 (257)
.. .+.+...+-.++..+...|+--.|.+-++.+.+ .|+..+.
T Consensus 307 tl-dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdd 353 (361)
T COG3947 307 TL-DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDD 353 (361)
T ss_pred hc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcch
Confidence 76 355777888899999999998888888877754 3555443
No 351
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=84.98 E-value=3.9 Score=21.22 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=16.9
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 041259 196 SRCGHLQEARVLFHEMIGRGILPDEILCISLL 227 (257)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 227 (257)
.+.|-.+++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555555554444
No 352
>PRK09687 putative lyase; Provisional
Probab=84.66 E-value=15 Score=27.73 Aligned_cols=220 Identities=11% Similarity=0.031 Sum_probs=138.1
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh----HHHHHHHHHHHhcCCcccHHH
Q 041259 7 KADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEP----SEALSLLDEMLDSRIEVTVVT 82 (257)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 82 (257)
.+|.......+..+...|. +++...+..+... ++...-...+.++...|+. +++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 3566666777888877775 4445555555543 5666667777778887763 4677777777443 345566
Q ss_pred HHHHHHHHHhcCcH-----HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 041259 83 FCVLIDGLCKSGLV-----REAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALI 157 (257)
Q Consensus 83 ~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (257)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..+...+-.+.+. ++..+-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 65666666554321 233444444333 3455666677778888777 4566666666653 3555666666
Q ss_pred HHHHccc-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCH
Q 041259 158 DGYLKHE-SFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNM 236 (257)
Q Consensus 158 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (257)
.++...+ +...+...+..+... ++..+-...+.++.+.|+. .+...+-...+.+ + .....+.++.+.|+.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 6666653 234566666555543 4777778888888888884 5666555555542 2 234678888888885
Q ss_pred HHHHHHHHHHHhC
Q 041259 237 DEAIELQNEMMGR 249 (257)
Q Consensus 237 ~~a~~~~~~m~~~ 249 (257)
+|...+..+.+.
T Consensus 252 -~a~p~L~~l~~~ 263 (280)
T PRK09687 252 -TLLPVLDTLLYK 263 (280)
T ss_pred -hHHHHHHHHHhh
Confidence 688888888763
No 353
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=84.59 E-value=9 Score=25.56 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=19.3
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 041259 155 ALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCG 199 (257)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 199 (257)
.++..+...++.-.|.++++.+.+.++..+..|.-.-+..+...|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 333444444444445555555554444444444333334443333
No 354
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=84.05 E-value=3.8 Score=30.88 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHH
Q 041259 187 AYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCIS 225 (257)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (257)
-|+..|....+.||+++|+.++++..+.|..--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 345777777777777777777777777776544444433
No 355
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.97 E-value=11 Score=26.39 Aligned_cols=33 Identities=18% Similarity=0.131 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHc
Q 041259 147 IPDTTAYTALIDGYLKHESFKEALNLKNRMTEV 179 (257)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (257)
.|+..+|..++.++...|+.++|.+..+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456666666666666677777776666666554
No 356
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=83.82 E-value=4.5 Score=20.99 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=19.3
Q ss_pred HhcCChhhHHHHHHHHHHcCCCccHHHHHHHHH
Q 041259 21 CIESKFEDSKLLLSEMKENGLTANTVICTTLMD 53 (257)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 53 (257)
-+.|-..++..+++.|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455556666666666666666555555555443
No 357
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=83.62 E-value=18 Score=27.90 Aligned_cols=97 Identities=8% Similarity=0.017 Sum_probs=54.4
Q ss_pred CccHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccC
Q 041259 42 TANTVICTTLMDAYFKAGE------------PSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDF 109 (257)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (257)
|-|..+|-.++..--..-. .+.-+.++++.++.+ +.+......++..+.+..+.+...+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5678888877765433211 244556666666552 335555666666666666666666777776654
Q ss_pred CCCCCHHHHHHHHHHHHh---cCcHHHHHHHHHH
Q 041259 110 GLHPNVAVYTALIDGLCK---KNCIERARNLFDE 140 (257)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~ 140 (257)
. +-+...|...+..... .-.++....+|.+
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 2 2355566666554433 2234444444443
No 358
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=83.43 E-value=13 Score=28.26 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----------cCCHHHH
Q 041259 170 LNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYE----------RGNMDEA 239 (257)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~a 239 (257)
.++|+.+...++.|.-.++..+.-.+.+.=.+.+.+.+|+.+... +.-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467788888889999888888888888888899999999988863 3336666665553 4777766
Q ss_pred HHHHH
Q 041259 240 IELQN 244 (257)
Q Consensus 240 ~~~~~ 244 (257)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 66654
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.66 E-value=3.3 Score=17.95 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 222 LCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.+..+...+...|++++|...+...++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345556666667777777777766654
No 360
>PRK09687 putative lyase; Provisional
Probab=81.64 E-value=20 Score=27.03 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHcccC
Q 041259 149 DTTAYTALIDGYLKHES 165 (257)
Q Consensus 149 ~~~~~~~l~~~~~~~~~ 165 (257)
+..+-...+.++.+.++
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 33334444444444444
No 361
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=81.63 E-value=13 Score=24.79 Aligned_cols=99 Identities=11% Similarity=0.160 Sum_probs=66.7
Q ss_pred HHHhcCCcccH--HHHHHHHHHHHhcCcHHHHHHHHHhcccCC-----CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHh
Q 041259 70 EMLDSRIEVTV--VTFCVLIDGLCKSGLVREAIDYFGRMPDFG-----LHPNVAVYTALIDGLCKKNC-IERARNLFDEM 141 (257)
Q Consensus 70 ~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~ 141 (257)
.+.+.+..++. ...+.++......++....+.+++.+.... -..+...|..++.+..+..- ---+..+|+.+
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 34444444443 345677777777777777777777663211 02456688999998876665 44567788888
Q ss_pred hhCCCCCCHHHHHHHHHHHHcccCHHH
Q 041259 142 PKRDMIPDTTAYTALIDGYLKHESFKE 168 (257)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (257)
.+.+..++..-|..++.++.+-...+.
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 887888899999999998877644333
No 362
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.37 E-value=21 Score=26.99 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=17.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 224 ISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 224 ~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
..++..+.+.|.+.+|+.+...+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Confidence 457777888888888887766554
No 363
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=81.17 E-value=19 Score=26.51 Aligned_cols=64 Identities=14% Similarity=0.100 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHh----CCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 185 LNAYTSLVWGLSRCGHLQEARVLFHEMIG----RGI-LPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 185 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
......+...|...|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+..+.+.-+|..
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34445677888899999999999998853 232 34556677788888899999998888776653
No 364
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.08 E-value=16 Score=25.43 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHHcCCCccHHHHHHHHHH---HHhcCC-------hHHHHHHHHHHHhcCCccc-HHHHHHHHHHHHhcC
Q 041259 26 FEDSKLLLSEMKENGLTANTVICTTLMDA---YFKAGE-------PSEALSLLDEMLDSRIEVT-VVTFCVLIDGLCKSG 94 (257)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~-------~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~ 94 (257)
++.|.+..+.-...+ |.|...++.-..+ ++.... +++|+.-|++.+.. .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 455666666544443 4555544332222 222233 33444444444443 333 355666666665432
Q ss_pred ----c-------HHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 041259 95 ----L-------VREAIDYFGRMPDFGLHPNVAVYTALIDGLC 126 (257)
Q Consensus 95 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (257)
+ +++|...|++..+. .|+...|+.-+....
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA 124 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 2 44445555555443 577777777666553
No 365
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=81.07 E-value=9.4 Score=22.82 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=6.6
Q ss_pred ccCHHHHHHHHHHHH
Q 041259 163 HESFKEALNLKNRMT 177 (257)
Q Consensus 163 ~~~~~~a~~~~~~~~ 177 (257)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344444444444444
No 366
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=80.78 E-value=7.5 Score=21.48 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 219 DEILCISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
|..-.-.+|.++...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334445666666666666666666554
No 367
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.20 E-value=39 Score=29.41 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=87.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGLTA---NTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKS 93 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (257)
|.-+.+.+.+++|++..+.... ..| ....+...|..+.-.|++++|-...-+|... +..-|.--+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 4556678889999888766543 234 3456778888888889999998888888754 455566566666655
Q ss_pred CcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh--------------h---hCCCCCCHHHHHHH
Q 041259 94 GLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEM--------------P---KRDMIPDTTAYTAL 156 (257)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------~---~~~~~~~~~~~~~l 156 (257)
++.... +.-+....-..+...|..++..+.. .+...-.++...- . +..-. +...-..|
T Consensus 437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~e~L 511 (846)
T KOG2066|consen 437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALLEVL 511 (846)
T ss_pred cccchh---hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHHHHH
Confidence 554332 2222222112345567766666665 2222222221111 0 01111 22333457
Q ss_pred HHHHHcccCHHHHHHHHHHHHH
Q 041259 157 IDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
+..|...+++..|..++-.+.+
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHccChHHHHHHHHhccC
Confidence 7778888888888887766543
No 368
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=79.98 E-value=10 Score=22.64 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=7.1
Q ss_pred cCcHHHHHHHHHHHH
Q 041259 198 CGHLQEARVLFHEMI 212 (257)
Q Consensus 198 ~~~~~~a~~~~~~~~ 212 (257)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344444444444444
No 369
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=79.97 E-value=3.4 Score=26.92 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhcCCccc
Q 041259 62 SEALSLLDEMLDSRIEVT 79 (257)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~ 79 (257)
..|-.+|++|+++|.+||
T Consensus 112 ~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 112 TDAYAVFRKMLERGNPPD 129 (140)
T ss_pred CcHHHHHHHHHhCCCCCc
Confidence 344455555555554443
No 370
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=79.38 E-value=31 Score=29.17 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC
Q 041259 232 ERGNMDEAIELQNEMMGRGLLSG 254 (257)
Q Consensus 232 ~~g~~~~a~~~~~~m~~~~~~~~ 254 (257)
+.|++.+|.+.+-.+++.++.|.
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk 529 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPK 529 (566)
T ss_dssp -----------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcH
Confidence 34777777777777776666654
No 371
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.92 E-value=28 Score=26.93 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=14.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC
Q 041259 230 HYERGNMDEAIELQNEMMGRGL 251 (257)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~~~~~ 251 (257)
+..+|..+.|..+++-+++.++
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHHc
Confidence 3456777777777777766553
No 372
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=78.91 E-value=2.6 Score=27.43 Aligned_cols=28 Identities=39% Similarity=0.635 Sum_probs=15.2
Q ss_pred CcHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041259 199 GHLQEARVLFHEMIGRGILPDEILCISLLK 228 (257)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (257)
|.-.+|..+|++|++.|.+||. |+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 4445556666666666665554 444443
No 373
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.77 E-value=20 Score=30.05 Aligned_cols=87 Identities=14% Similarity=0.038 Sum_probs=47.7
Q ss_pred cccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 041259 162 KHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIE 241 (257)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 241 (257)
..|+...|...+.......+.-..+....|.....+.|....|..++.+.+... ...+.++..+..++.-..+.++|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 356666666665554433222222334444555555566666666666555543 2234455556666666667777777
Q ss_pred HHHHHHhC
Q 041259 242 LQNEMMGR 249 (257)
Q Consensus 242 ~~~~m~~~ 249 (257)
.|++.++.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 66665543
No 374
>PRK09462 fur ferric uptake regulator; Provisional
Probab=78.70 E-value=11 Score=25.23 Aligned_cols=61 Identities=16% Similarity=0.300 Sum_probs=39.2
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcH
Q 041259 35 EMKENGLTANTVICTTLMDAYFKA-GEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLV 96 (257)
Q Consensus 35 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (257)
.+.+.|+.++.. -..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345566655544 33444555543 45777888888888777666777766677777776654
No 375
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=78.53 E-value=14 Score=23.19 Aligned_cols=81 Identities=15% Similarity=0.186 Sum_probs=37.2
Q ss_pred cCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHH
Q 041259 23 ESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDY 102 (257)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (257)
....++|..+.+.+...+. ....+--+-+..+.+.|++++| +..-. ....||...|-.|- -.+.|..+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL~--a~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAALC--AWKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHHH--HHHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHHH--HHhhccHHHHHHH
Confidence 4456666666666666542 1222222233345566666666 11111 12345555554433 3355666666666
Q ss_pred HHhcccCC
Q 041259 103 FGRMPDFG 110 (257)
Q Consensus 103 ~~~~~~~~ 110 (257)
+.++..+|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 66665554
No 376
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=78.26 E-value=8.6 Score=22.67 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=27.6
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCCC
Q 041259 191 LVWGLSRCGHLQEARVLFHEMIGRGILPDEI---LCISLLKKHYERGNMDEAIELQNEMMGRGLLSGSKN 257 (257)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 257 (257)
.+...+..|+.+ +++.+.+.|..++.. .++.+.. .+..|+ .++++.+.+.|..++.+|
T Consensus 29 ~l~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~----~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 29 ALHYAAENGNLE----IVKLLLENGADINSQDKNGNTALHY-AAENGN----LEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHHHHTTTHH----HHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTH----HHHHHHHHHTTT-TTSS-
T ss_pred HHHHHHHcCCHH----HHHHHHHhcccccccCCCCCCHHHH-HHHcCC----HHHHHHHHHcCCCCCCcC
Confidence 333444556643 334444455544432 2333333 344444 345566777788777764
No 377
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.95 E-value=34 Score=27.33 Aligned_cols=174 Identities=17% Similarity=0.093 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC--CcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccC---------CCCCCH
Q 041259 47 ICTTLMDAYFKAGEPSEALSLLDEMLDSR--IEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDF---------GLHPNV 115 (257)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 115 (257)
.+.-+...|..+|+++.|++.|.+...-- .+.....|-.+|..-.-.|+|..+..+..+..+. .+++-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 45677788889999999999998865421 1223445566666666778888777777666543 123334
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhCC------CCCCHHHHHHHHHHHHcccCHHHHHH-----HHHHHHHcCCCcc
Q 041259 116 AVYTALIDGLCKKNCIERARNLFDEMPKRD------MIPDTTAYTALIDGYLKHESFKEALN-----LKNRMTEVGVDLD 184 (257)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~ 184 (257)
..+..+...+.+ +++.|.+.|-...... +.|...+....+.+....++-+--.. .|+.+.+. .
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel----~ 305 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL----E 305 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc----C
Confidence 444445444443 6666665554332211 22333333333334433333222222 23333332 3
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-----CCCCcHHHHHHHHH
Q 041259 185 LNAYTSLVWGLSRCGHLQEARVLFHEMIGR-----GILPDEILCISLLK 228 (257)
Q Consensus 185 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~ 228 (257)
+.....+.+.|. +++..+.++++++... -+.|.+.+...+|+
T Consensus 306 Pqlr~il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 306 PQLREILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred hHHHHHHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 444555554443 5788888888877654 23455555544444
No 378
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=77.72 E-value=7.1 Score=21.87 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=24.9
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 041259 7 KADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYF 56 (257)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 56 (257)
.|+...++.++...++...+++++..+.++.+.|. .+..+|.--++.++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 34455555555655555556666666666555552 34444444444443
No 379
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=77.62 E-value=25 Score=25.79 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh
Q 041259 13 YGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCK 92 (257)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (257)
....+..|+..-++..|-...+.+.+ | ..+-.++++ |.+..+..--.++.+-....+++.+......++ +..
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiE----P-IQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIE----P-IQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhh----h-HHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 44456677777777766665555543 2 233333333 444444333344444444445554444444433 345
Q ss_pred cCcHHHHHHHHHhcccC------------CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 041259 93 SGLVREAIDYFGRMPDF------------GLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGY 160 (257)
Q Consensus 93 ~~~~~~a~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (257)
.||..+|+..++.-... --.|.+.....++..|. .+++++|.+++.++-+.|..|. ...+.+.+++
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~-Dii~~~FRv~ 282 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE-DIITTLFRVV 282 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 67777777666543210 01477777667766554 5788999999999999988753 4455566654
Q ss_pred Hc
Q 041259 161 LK 162 (257)
Q Consensus 161 ~~ 162 (257)
-.
T Consensus 283 K~ 284 (333)
T KOG0991|consen 283 KN 284 (333)
T ss_pred Hh
Confidence 43
No 380
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.27 E-value=23 Score=25.07 Aligned_cols=93 Identities=16% Similarity=0.079 Sum_probs=60.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 041259 121 LIDGLCKKNCIERARNLFDEMPKRDMIPD--TTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRC 198 (257)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 198 (257)
+...+...+++++|..-++.........+ ..+--.|.+.....|.+++|+.+++.....+. .......-...+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 34567778888888888887664421111 11222345566778888888888887666543 233344456677888
Q ss_pred CcHHHHHHHHHHHHhCC
Q 041259 199 GHLQEARVLFHEMIGRG 215 (257)
Q Consensus 199 ~~~~~a~~~~~~~~~~~ 215 (257)
|+-++|..-|+..+..+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888888764
No 381
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.07 E-value=50 Score=28.85 Aligned_cols=151 Identities=15% Similarity=0.110 Sum_probs=92.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCcc---cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 041259 52 MDAYFKAGEPSEALSLLDEMLDSRIEV---TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKK 128 (257)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (257)
+.-+.+.+.+++|++..+..... .| ........+..+...|++++|-...-.|.. .+..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 45567778889998887766543 33 345677888889999999999888888764 3556666666666666
Q ss_pred CcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHH-----------------HcCCCccHHHHHHH
Q 041259 129 NCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMT-----------------EVGVDLDLNAYTSL 191 (257)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~~~~~l 191 (257)
++.... +.-+.......+...|..++..+.. .+...-.++..+-. +..-. +...-..|
T Consensus 437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~e~L 511 (846)
T KOG2066|consen 437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALLEVL 511 (846)
T ss_pred cccchh---hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHHHHH
Confidence 655433 3333333333456677777776665 33333222222110 00011 22334457
Q ss_pred HHHHHhcCcHHHHHHHHHHHHh
Q 041259 192 VWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~~~~ 213 (257)
+..|...++++.|..++-..++
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHccChHHHHHHHHhccC
Confidence 7888888888888887765553
No 382
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=76.85 E-value=31 Score=26.40 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----------cCcHHHH
Q 041259 65 LSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK----------KNCIERA 134 (257)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 134 (257)
.++|+.+...++.|.-.++.=+.-.+.+.=.+..++.+|+.+... ..-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 456777777777777777666666666666777778888877642 2225555555543 5777777
Q ss_pred HHHHHHhh
Q 041259 135 RNLFDEMP 142 (257)
Q Consensus 135 ~~~~~~~~ 142 (257)
.++++.-.
T Consensus 338 mkLLQ~yp 345 (370)
T KOG4567|consen 338 MKLLQNYP 345 (370)
T ss_pred HHHHhcCC
Confidence 77776543
No 383
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=76.84 E-value=32 Score=26.56 Aligned_cols=135 Identities=20% Similarity=0.228 Sum_probs=65.9
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh----cCCccc
Q 041259 5 NIKADLPLYGTIIWGLCIESKFEDSKLLLSEMKEN-GLTANTVICTTLMDAYFKAGEPSEALSLLDEMLD----SRIEVT 79 (257)
Q Consensus 5 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~ 79 (257)
+++.|...++.+...- ..++++-.+..+...+. |-.--...+......|++-|+-+.|++.+.+..+ .|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~n--eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKAN--EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHhh--HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 3445555555554421 22333333334444332 2222234556666778888888888877766543 456666
Q ss_pred HHHHHHHHHHH-HhcCcHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 041259 80 VVTFCVLIDGL-CKSGLVREAIDYFGRMPDFGLHPN----VAVYTALIDGLCKKNCIERARNLFDEMPK 143 (257)
Q Consensus 80 ~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (257)
+..+..-+..+ ....-..+-.+..+.+.+.|..-+ ..+|..+- +...+++++|-.+|-+...
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 65554433322 222223333333334444443222 22333332 2344677777777766543
No 384
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=76.84 E-value=7.9 Score=29.26 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=28.2
Q ss_pred CCHHH-HHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHH
Q 041259 148 PDTTA-YTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYT 189 (257)
Q Consensus 148 ~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (257)
|+..+ |+..|....+.||+++|+.++++..+.|..--..+|-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 44444 4577777788888888888888888877654444443
No 385
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=76.48 E-value=16 Score=22.93 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=14.2
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHH
Q 041259 153 YTALIDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 386
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.41 E-value=30 Score=25.97 Aligned_cols=205 Identities=11% Similarity=0.152 Sum_probs=124.7
Q ss_pred cCCCccHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCcccH---HHHHHHHHHHHhcCcHHHHHHHHHhccc---CCC
Q 041259 39 NGLTANTVICTTLMDA-YFKAGEPSEALSLLDEMLDSRIEVTV---VTFCVLIDGLCKSGLVREAIDYFGRMPD---FGL 111 (257)
Q Consensus 39 ~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~ 111 (257)
.+-.||+..-|..-.. -.+..++++|+.-|++.++...+-.. .+...++..+.+.+++++....+.++.. +.+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3456776654433222 12345789999999999875323233 3445578888999999999998888742 111
Q ss_pred --CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh----C-CCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC--
Q 041259 112 --HPNVAVYTALIDGLCKKNCIERARNLFDEMPK----R-DMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVD-- 182 (257)
Q Consensus 112 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 182 (257)
.-+....++++...+...+.+....+++.-.. . +-.....|-..+...|...+++.+...+++++...-..
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 12455667777766666665555444443221 1 11112234456777888888888888888887653110
Q ss_pred ---------ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHH-----HhcCCHHHHHHHHH
Q 041259 183 ---------LDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR-GILPDEILCISLLKKH-----YERGNMDEAIELQN 244 (257)
Q Consensus 183 ---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~ 244 (257)
--...|..-|..|....+-.+...++++.+.- ..-|.+.... +|+-| .+.|++++|..-|-
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFF 255 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFF 255 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHH
Confidence 01356777788888888888888888876642 2345555544 33333 35577777654433
No 387
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.14 E-value=32 Score=26.11 Aligned_cols=198 Identities=13% Similarity=0.087 Sum_probs=104.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCccHHHH-------HHHHHHHHhcCChHHHHHHHHHHHh----cCCcccHHHHH
Q 041259 16 IIWGLCIESKFEDSKLLLSEMKENGLTANTVIC-------TTLMDAYFKAGEPSEALSLLDEMLD----SRIEVTVVTFC 84 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 84 (257)
+.+...+.+++++|...+.++...|+..+..+. ..+...|...|+....-+......+ -..+-......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 556667788999999999999988887777654 3456677777877665555443322 11122233444
Q ss_pred HHHHHHHhc-CcHHHHHHHHHhcccCCCCCCHH-----HHHHHHHHHHhcCcHHHHHHHHHH----hhhCCCCCCHHHHH
Q 041259 85 VLIDGLCKS-GLVREAIDYFGRMPDFGLHPNVA-----VYTALIDGLCKKNCIERARNLFDE----MPKRDMIPDTTAYT 154 (257)
Q Consensus 85 ~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~ 154 (257)
+++..+-.. ..++....+.....+-....... .-..++..+.+.|.+.+|+.+... +.+.+-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 455444332 33444444444443321111111 112356677778888888766544 33444445544433
Q ss_pred HH-HHHHHcccCHHHHHHHHHHHHHc----CCCccHHHHHHHHHHH--HhcCcHHHHHHHHHHHHh
Q 041259 155 AL-IDGYLKHESFKEALNLKNRMTEV----GVDLDLNAYTSLVWGL--SRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 155 ~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~ 213 (257)
.+ -.+|....+..++..-+...+-. -.+|-...---++++- +...++..|...|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 22 23455555666555555443321 1233333222233322 234456667776666654
No 388
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=75.48 E-value=18 Score=22.87 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=12.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcC
Q 041259 52 MDAYFKAGEPSEALSLLDEMLDSR 75 (257)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~ 75 (257)
+..+.++...++|+++++-|.+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344445555555555555555554
No 389
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=75.26 E-value=23 Score=29.93 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHHHcCCCcc
Q 041259 164 ESFKEALNLKNRMTEVGVDLD 184 (257)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~ 184 (257)
+++.+|.+.+-.+...+.-|.
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk 529 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPK 529 (566)
T ss_dssp ---------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcH
Confidence 555555555555555444443
No 390
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.78 E-value=16 Score=22.09 Aligned_cols=22 Identities=32% Similarity=0.258 Sum_probs=12.3
Q ss_pred HHHHHhcCcHHHHHHHHHHHHh
Q 041259 192 VWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~~~~ 213 (257)
.......|++++|...+++.++
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3344455666666666665555
No 391
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=74.75 E-value=33 Score=29.43 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=52.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCChH------HHHHHHHHHHhcCCcccHHHHHHH
Q 041259 15 TIIWGLCIESKFEDSKLLLSEMKENG--LTANTVICTTLMDAYFKAGEPS------EALSLLDEMLDSRIEVTVVTFCVL 86 (257)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 86 (257)
+|+.+|...|++.++.++++.+...+ -+.-...+|..|+.+.+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999987653 2333456788888888888763 3344444333 44466777766
Q ss_pred HHHHHh
Q 041259 87 IDGLCK 92 (257)
Q Consensus 87 l~~~~~ 92 (257)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665543
No 392
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.71 E-value=16 Score=30.66 Aligned_cols=98 Identities=16% Similarity=0.098 Sum_probs=56.4
Q ss_pred cCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 041259 58 AGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNL 137 (257)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (257)
.|+...|.+.+.........-.-...-.|.+...+.|....|-.++.+..... ....-++-.+.+++....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 46667777776666543222222333445555555566666666666554433 23444566677777777778888888
Q ss_pred HHHhhhCCCCCCHHHHHHHH
Q 041259 138 FDEMPKRDMIPDTTAYTALI 157 (257)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~ 157 (257)
|++..+.... +...-+.|.
T Consensus 699 ~~~a~~~~~~-~~~~~~~l~ 717 (886)
T KOG4507|consen 699 FRQALKLTTK-CPECENSLK 717 (886)
T ss_pred HHHHHhcCCC-ChhhHHHHH
Confidence 8777666543 444444443
No 393
>PRK09857 putative transposase; Provisional
Probab=74.46 E-value=36 Score=25.95 Aligned_cols=65 Identities=11% Similarity=0.147 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041259 188 YTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGRGLLS 253 (257)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 253 (257)
+..++......++.++..++++.+.+. .++.....-++.+-+.+.|..+++.++..+|...|+.+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 444555545556666566666555544 22233334455666666666666777777777777653
No 394
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.12 E-value=27 Score=24.36 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041259 202 QEARVLFHEMIGRGILPDEILCISLLKKH 230 (257)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (257)
++|...|++... ..|+..+|..-+...
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 334444444443 245555555554443
No 395
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.05 E-value=18 Score=22.39 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=44.6
Q ss_pred cHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHH
Q 041259 95 LVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKN 174 (257)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (257)
..++|..+-+.+...+- ....+--+-+..+...|++++|..+.+.. ..||...|.++.. .+.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 35666666666654431 12222222344566777787777776655 3567666666544 35566666666666
Q ss_pred HHHHcC
Q 041259 175 RMTEVG 180 (257)
Q Consensus 175 ~~~~~~ 180 (257)
++...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 666655
No 396
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.54 E-value=38 Score=25.80 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----CCCCCcHHHH
Q 041259 152 AYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIG-----RGILPDEILC 223 (257)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 223 (257)
+++...+.|..+|.+.+|.++.+.....+ +.+...+..++..+...|+--.+.+-++++.+ .|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 44556677788888888888888877764 45777788888888888886666666665543 3665554443
No 397
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.92 E-value=38 Score=25.54 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=74.7
Q ss_pred cCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh----cC
Q 041259 23 ESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFK----AGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCK----SG 94 (257)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~ 94 (257)
.+++..+...+......+. ......+...|.. ..+...|.++|+...+.|.. .....+...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCccc
Confidence 4455566666666555332 1233333333332 23456677777766655432 233334444443 33
Q ss_pred cHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC-------cHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH----cc
Q 041259 95 LVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKN-------CIERARNLFDEMPKRDMIPDTTAYTALIDGYL----KH 163 (257)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 163 (257)
|..+|..+|....+.|..+...+...+...|..-. +...|...+.+....+ +......+...|. -.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 67777777777776664332222233333333221 2235666666666554 3333333333332 23
Q ss_pred cCHHHHHHHHHHHHHcCC
Q 041259 164 ESFKEALNLKNRMTEVGV 181 (257)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~ 181 (257)
.+.++|...|....+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 466677777777666653
No 398
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=72.66 E-value=28 Score=23.94 Aligned_cols=62 Identities=10% Similarity=-0.001 Sum_probs=41.4
Q ss_pred hhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHH
Q 041259 141 MPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQE 203 (257)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 203 (257)
+...|+.++. .-..++..+...++.-.|.++++.+.+.+..++..|.-.-+..+.+.|-+.+
T Consensus 17 L~~~GlR~T~-qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTP-QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCH-HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3455666433 3345555555556667788888888888777777777777777787776543
No 399
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=72.40 E-value=62 Score=27.80 Aligned_cols=64 Identities=9% Similarity=0.173 Sum_probs=37.6
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHhc
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGE-------PSEALSLLDEMLDS 74 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 74 (257)
+...| .+|..|.++|++++|.++....... .......+...+..|....+ -++...-|++....
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 44556 4677788899999998888554433 34445556667777765422 23445555555543
No 400
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=72.00 E-value=79 Score=28.82 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcC--cHHHHHHHHHHhhhC
Q 041259 117 VYTALIDGLCKKN--CIERARNLFDEMPKR 144 (257)
Q Consensus 117 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 144 (257)
-...++.+|.+.+ ++++|+..+.++.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3445666666666 666777766666654
No 401
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=71.72 E-value=33 Score=24.36 Aligned_cols=49 Identities=4% Similarity=0.079 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHH-HHHHHHHHHHhcCCh
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTV-ICTTLMDAYFKAGEP 61 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 61 (257)
..+.+++.+...|+++.|-+.|.-+.+.. +.|.. .|..-+..+.+.+.-
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~ 92 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQ 92 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCc
Confidence 34556666666777777777777666543 22222 344444444444433
No 402
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=71.16 E-value=22 Score=22.39 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=17.2
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 041259 19 GLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAG 59 (257)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 59 (257)
.+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 9 ~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 9 VLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33333344444444444444443334444333444444433
No 403
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=70.40 E-value=20 Score=22.84 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=19.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC
Q 041259 51 LMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSG 94 (257)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (257)
++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 33444444444445555555554444444444444444444444
No 404
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=69.71 E-value=55 Score=26.09 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=36.3
Q ss_pred HHHHhcCcHHHHHHHHHHhhhCCCCCCHH--HHHHHHHHHHc--ccCHHHHHHHHHHHHHc
Q 041259 123 DGLCKKNCIERARNLFDEMPKRDMIPDTT--AYTALIDGYLK--HESFKEALNLKNRMTEV 179 (257)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 179 (257)
..+.+.+++..|.++|+.+... +.++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455778888888888888776 444443 34455555543 45677888887776554
No 405
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=69.45 E-value=48 Score=25.25 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=8.5
Q ss_pred cHHHHHHHHHHHHhcCcH
Q 041259 184 DLNAYTSLVWGLSRCGHL 201 (257)
Q Consensus 184 ~~~~~~~li~~~~~~~~~ 201 (257)
|+..|..+..+|.-.|+.
T Consensus 196 d~~~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 196 DPDKYSKVQEAYQLLGKT 213 (291)
T ss_pred CHHHHHHHHHHHHHHhhh
Confidence 444455555555444433
No 406
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=69.29 E-value=36 Score=23.84 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=10.5
Q ss_pred HHHcccCHHHHHHHHHHHHH
Q 041259 159 GYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~ 178 (257)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34555555555555555444
No 407
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.28 E-value=43 Score=24.71 Aligned_cols=57 Identities=12% Similarity=0.021 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhcc----cCCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 041259 84 CVLIDGLCKSGLVREAIDYFGRMP----DFGL-HPNVAVYTALIDGLCKKNCIERARNLFDE 140 (257)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (257)
-.+...|...|+++.|.++|+.+. +.|. .+...+...+..++...|+.+....+--+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345566666677777777666652 1221 23344555566666666766666555433
No 408
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.96 E-value=59 Score=26.09 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=89.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---------CCcccH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENG--LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS---------RIEVTV 80 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 80 (257)
.+.-+...|...|+++.|.+.+.+.+..- .+.....|-.+|......|+|.....+..+.... .+++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 45667788999999999999999966531 2334556777788888889988887777766543 133344
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhcccCC------CCC-CHHHHHHHHHHHHhcCcHHHHHHH-----HHHhhhCCCCC
Q 041259 81 VTFCVLIDGLCKSGLVREAIDYFGRMPDFG------LHP-NVAVYTALIDGLCKKNCIERARNL-----FDEMPKRDMIP 148 (257)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~~~~~~a~~~-----~~~~~~~~~~~ 148 (257)
..+..+.....+ ++..|.+.|-...... +.| |+.+|. .+.+....++-+--..+ |+...+.
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~flel---- 304 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLEL---- 304 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHhc----
Confidence 555555555444 6777766654432111 123 344443 33333333332222222 2222222
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 041259 149 DTTAYTALIDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
.+..+..+..-| .+++..++++++++..
T Consensus 305 ~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 305 EPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred ChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 233344443333 4677888888887754
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.69 E-value=23 Score=21.39 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=31.4
Q ss_pred HHhcCChhhHHHHHHHHHH----cCCCcc----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041259 20 LCIESKFEDSKLLLSEMKE----NGLTAN----TVICTTLMDAYFKAGEPSEALSLLDEMLD 73 (257)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (257)
..+.|++..|.+.+.+..+ .+.... ....-.+.......|++++|...+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567888888665555433 322221 12222344556677888888888877764
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=68.44 E-value=59 Score=25.93 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=40.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCccHH--HHHHHHHHHHh--cCChHHHHHHHHHHHhc
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGLTANTV--ICTTLMDAYFK--AGEPSEALSLLDEMLDS 74 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 74 (257)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455889999999999999987 555554 44455555443 45678899999887764
No 411
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=68.27 E-value=49 Score=24.94 Aligned_cols=184 Identities=18% Similarity=0.144 Sum_probs=116.4
Q ss_pred hcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh----cCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----c
Q 041259 57 KAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCK----SGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK----K 128 (257)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 128 (257)
..+++..+...+......+ +......+...|.. ..+...|.++|....+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 4456777888887776643 22344444444433 4568889999997777653 2333345555554 4
Q ss_pred CcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc-----c--CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----
Q 041259 129 NCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKH-----E--SFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSR---- 197 (257)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 197 (257)
.+..+|...++...+.|..+-..+...+...|..- - +...|...+.+....+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 48999999999999988653323344444444443 1 3347888898888876 44444445544433
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhCCCCC
Q 041259 198 CGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERG---------------NMDEAIELQNEMMGRGLLS 253 (257)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~~~~~ 253 (257)
..+..+|...|....+.|. ......+- .+...| +...|...+......+...
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 4478999999999999875 33233233 444444 7778888888877766543
No 412
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.61 E-value=94 Score=27.96 Aligned_cols=116 Identities=14% Similarity=0.059 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhcccCC--CC-CCHHHHHHHHHHHHhcCcH--HHHHHHHHHhhhCCCCCCHHHHH--
Q 041259 82 TFCVLIDGLCKSGLVREAIDYFGRMPDFG--LH-PNVAVYTALIDGLCKKNCI--ERARNLFDEMPKRDMIPDTTAYT-- 154 (257)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 154 (257)
-|..|+..|...|+.++|+++|.++.+.. .. .-...+..++..+.+.+.. +-.+++-+.....+..-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 36778888888888899998888886531 00 1111222344444443333 33333333333322111001111
Q ss_pred ----------HHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 041259 155 ----------ALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSR 197 (257)
Q Consensus 155 ----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 197 (257)
..+-.|......+-+..+++.+....-.++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1122345556666777777777766555566777777776664
No 413
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=67.05 E-value=19 Score=22.64 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=32.9
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHH
Q 041259 156 LIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQ 202 (257)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (257)
++......+..-.|.++++.+.+.+..++..|.-..+..+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44555555666678888888888776677777777777777777654
No 414
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.96 E-value=97 Score=27.88 Aligned_cols=187 Identities=14% Similarity=0.042 Sum_probs=102.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcC---CCccHHHHHHHHHHHHhcCCh--HHHHHHHHHHHhcCCcccHHHHH--
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENG---LTANTVICTTLMDAYFKAGEP--SEALSLLDEMLDSRIEVTVVTFC-- 84 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 84 (257)
-|..|+..|...|..++|+++|.+..... -.--...+..++....+.+.. +-.+++-+...+....-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47889999999999999999999987732 111122334455555555544 44444444443322111111111
Q ss_pred ----------HHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCc--------HHHHHHH-----HHHh
Q 041259 85 ----------VLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNC--------IERARNL-----FDEM 141 (257)
Q Consensus 85 ----------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~-----~~~~ 141 (257)
..+-.|......+.+..+++.+....-.++....+.++..|++.=+ -+++.+. +..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 1223345556677788888888765545677777777777765311 1222222 1111
Q ss_pred hh--CCCC--------CCHHHHHHHHHHHHcccCHHHHHHHHHHHHHc-------------CCCccHHHHHHHHHHHHhc
Q 041259 142 PK--RDMI--------PDTTAYTALIDGYLKHESFKEALNLKNRMTEV-------------GVDLDLNAYTSLVWGLSRC 198 (257)
Q Consensus 142 ~~--~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~~li~~~~~~ 198 (257)
.+ .... |....|....-.+.+.|+.++|+.++-..... ...++...|..+++.+...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 11 0111 12333444444455788888888876544321 1334677788888887765
No 415
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=66.90 E-value=85 Score=27.18 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=59.1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHcccCHHH------HHHHHHHHHHcCCCccHHHHHHH
Q 041259 120 ALIDGLCKKNCIERARNLFDEMPKR--DMIPDTTAYTALIDGYLKHESFKE------ALNLKNRMTEVGVDLDLNAYTSL 191 (257)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 191 (257)
.|+.+|...|++..+.++++..... |-..-...||..|+...+.|.++- +.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999987654 222235678888888888887653 333444333 34477888888
Q ss_pred HHHHHhcCcHHHHHHHHHHHH
Q 041259 192 VWGLSRCGHLQEARVLFHEMI 212 (257)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~~~ 212 (257)
+.+....-.-....-++.+++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 777665333333333444444
No 416
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.57 E-value=42 Score=23.55 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=12.1
Q ss_pred HHHHhcCcHHHHHHHHHhccc
Q 041259 88 DGLCKSGLVREAIDYFGRMPD 108 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~ 108 (257)
-.|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345556666666666665544
No 417
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=66.19 E-value=30 Score=21.65 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHh
Q 041259 119 TALIDGLCKKNCIERARNLFDEM 141 (257)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~ 141 (257)
..++..|...++.++|...++++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34555666667777777666665
No 418
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=65.86 E-value=35 Score=22.40 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCc
Q 041259 48 CTTLMDAYFKAGEPSEALSLLDEMLDSRIE 77 (257)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 77 (257)
+..++--+...|+++.|+++.+..++.|.+
T Consensus 51 l~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 51 LMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 334444556777777777777777776643
No 419
>PRK11619 lytic murein transglycosylase; Provisional
Probab=65.74 E-value=90 Score=27.07 Aligned_cols=228 Identities=7% Similarity=-0.020 Sum_probs=120.4
Q ss_pred cCChhhHHHHHHHHHHcC-CCccH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHH
Q 041259 23 ESKFEDSKLLLSEMKENG-LTANT--VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREA 99 (257)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (257)
..+.+.|..++....... ..+.. .++..+.......+...++...+....... .+.....--+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 445577888887764432 22221 223344433333332556666666554332 2333444445555578888888
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhC------------CCC--------CCHH------HH
Q 041259 100 IDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKR------------DMI--------PDTT------AY 153 (257)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~--------~~~~------~~ 153 (257)
...+..|.... .....-.--+.+++...|+.++|...|+.+... |.. |... .-
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 410 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPE 410 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChH
Confidence 88888875432 223334445677777789999988888776321 111 0000 00
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC--CcHHHHHHHHHHHH
Q 041259 154 TALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGIL--PDEILCISLLKKHY 231 (257)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 231 (257)
..-+..+...|....|...+..+... .+......+.......|..+.+............. --+..|...+..+.
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a 487 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYT 487 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHH
Confidence 11123344557777777777666654 24444555556666777777776655432211000 00113555666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCC
Q 041259 232 ERGNMDEAIELQNEMMGRGLLSGSK 256 (257)
Q Consensus 232 ~~g~~~~a~~~~~~m~~~~~~~~~~ 256 (257)
+.-.++.++-.----.++++.|+..
T Consensus 488 ~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 488 SGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred HHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 5556665554333334566777654
No 420
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=65.72 E-value=1.6e+02 Score=29.87 Aligned_cols=150 Identities=9% Similarity=0.057 Sum_probs=87.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHH----HHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 041259 15 TIIWGLCIESKFEDSKLLLSEM----KENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGL 90 (257)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (257)
.+..+-.+.+.+.+|...++.- .+. ......+-.+...|..-+++|...-+...... +...+ .-+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHH
Confidence 3444556778888888887773 221 12233344455578888888887777664221 22222 233444
Q ss_pred HhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHH-HHHHHHcccCHHHH
Q 041259 91 CKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTA-LIDGYLKHESFKEA 169 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a 169 (257)
...|++..|...|+++...+ ++...+++.++..-...|.++......+..... ..+....++. =+.+--+.++|+..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 55688888888888887765 344667777777766777777776655554433 1223333332 23444566777766
Q ss_pred HHHHH
Q 041259 170 LNLKN 174 (257)
Q Consensus 170 ~~~~~ 174 (257)
.....
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 65544
No 421
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=65.70 E-value=41 Score=23.14 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=38.4
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcH
Q 041259 36 MKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLV 96 (257)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (257)
+...|+..+..- ..++..+...++.-.|.++++.+.+.+..++..|...-|..+.+.|-+
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 445566555443 345555555566777888888888777666666666666666666644
No 422
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=65.68 E-value=22 Score=22.63 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=26.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 041259 15 TIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGE 60 (257)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 60 (257)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4555555665666777777777766655555555555555555554
No 423
>PRK12798 chemotaxis protein; Reviewed
Probab=65.35 E-value=71 Score=25.72 Aligned_cols=68 Identities=12% Similarity=0.011 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041259 185 LNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDE-----ILCISLLKKHYERGNMDEAIELQNEMMGRGLLSG 254 (257)
Q Consensus 185 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 254 (257)
...|..+.+.-.-.|+.+.|.-.-++.....-..+. ..|.... -.-..+++++.+.+..+-...+.|.
T Consensus 257 ~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa--~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 257 RELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAA--LVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHH--ccCcccHHHHHHHHhcCChhhCChh
Confidence 356777777777777777777766666654211111 1121111 1223556666666666655554443
No 424
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.82 E-value=48 Score=23.56 Aligned_cols=88 Identities=11% Similarity=-0.008 Sum_probs=39.1
Q ss_pred HHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHH-----HHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 041259 88 DGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTA-----LIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLK 162 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (257)
..+...+++++|+..++..... |....+.. |.+.....|.+++|+..++.....+.. ......-...+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 3344455555555555544432 11112221 233444455555555555554443221 1112222344555
Q ss_pred ccCHHHHHHHHHHHHHcC
Q 041259 163 HESFKEALNLKNRMTEVG 180 (257)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~ 180 (257)
.|+-++|..-|+...+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 555555555555555543
No 425
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.67 E-value=27 Score=20.56 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=13.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcC
Q 041259 52 MDAYFKAGEPSEALSLLDEMLDSR 75 (257)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~ 75 (257)
+..+.++.-.++|+++++-+.+.|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344455555566666666665554
No 426
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.18 E-value=4.4 Score=31.12 Aligned_cols=86 Identities=12% Similarity=0.088 Sum_probs=38.1
Q ss_pred cCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCccc-HHHHHHHHHHHHhcCcHHHHHH
Q 041259 23 ESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVT-VVTFCVLIDGLCKSGLVREAID 101 (257)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~ 101 (257)
.|.++.|++.|...+..+ ++....|..-...+.+.+++..|++=+....... || ..-|-.--.+....|+++++-.
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHHH
Confidence 345555555555554443 3334444444444555555555555554444331 21 1122222222233455555555
Q ss_pred HHHhcccCCC
Q 041259 102 YFGRMPDFGL 111 (257)
Q Consensus 102 ~~~~~~~~~~ 111 (257)
.+....+.++
T Consensus 204 dl~~a~kld~ 213 (377)
T KOG1308|consen 204 DLALACKLDY 213 (377)
T ss_pred HHHHHHhccc
Confidence 5555544443
No 427
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.01 E-value=6.7 Score=30.20 Aligned_cols=89 Identities=15% Similarity=0.028 Sum_probs=44.2
Q ss_pred cCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHH
Q 041259 93 SGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNL 172 (257)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (257)
.|.++.|++.|...+... ++....|..-.+++.+...+..|++=++.....+.. ...-|-.--.+....|+|++|...
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHH
Confidence 455666666666555543 334444444455555555555555555554443221 112222222333445666666666
Q ss_pred HHHHHHcCCCc
Q 041259 173 KNRMTEVGVDL 183 (257)
Q Consensus 173 ~~~~~~~~~~~ 183 (257)
+....+.+..+
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 66666555433
No 428
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=63.98 E-value=1e+02 Score=27.02 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 041259 145 DMIPDTTAYTALIDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
|+..+......+++.. .|+...+..+++++..
T Consensus 195 gi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 195 KIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred CCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 4444555554444432 4666666666655544
No 429
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=63.84 E-value=67 Score=24.94 Aligned_cols=152 Identities=13% Similarity=0.082 Sum_probs=80.0
Q ss_pred CcHHHHHHHHHhcccCCCCCCHHHH---------HHHHHHHHhc--CcHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHH
Q 041259 94 GLVREAIDYFGRMPDFGLHPNVAVY---------TALIDGLCKK--NCIERARNLFDEMPKR-DMIPDTTAYTALIDGYL 161 (257)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~--~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 161 (257)
++.+....++..+.+.+.-|=-... ..++....+. ...++-.+..++..+. |-.--...+......|+
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYyc 115 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYC 115 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4556666677777776654411110 1122222221 2233333334444333 11112345566677788
Q ss_pred cccCHHHHHHHHHHHH----HcCCCccHHHHHHHHHH-HHhcCcHHHHHHHHHHHHhCCCCCcHH----HHHHHHHHHHh
Q 041259 162 KHESFKEALNLKNRMT----EVGVDLDLNAYTSLVWG-LSRCGHLQEARVLFHEMIGRGILPDEI----LCISLLKKHYE 232 (257)
Q Consensus 162 ~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 232 (257)
+-|+-+.|++.++... ..|.+.|...+..-+.. |..+.-+.+-++..+.+.+.|-..+.. +|..+- +..
T Consensus 116 qigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~ms 193 (393)
T KOG0687|consen 116 QIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMS 193 (393)
T ss_pred HhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHH
Confidence 9999888888766543 45666676655443333 333333555555666666676544433 343332 345
Q ss_pred cCCHHHHHHHHHHHH
Q 041259 233 RGNMDEAIELQNEMM 247 (257)
Q Consensus 233 ~g~~~~a~~~~~~m~ 247 (257)
..++.+|..+|-+.+
T Consensus 194 vR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 194 VRNFKEAADLFLDSV 208 (393)
T ss_pred HHhHHHHHHHHHHHc
Confidence 678888888887654
No 430
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=63.77 E-value=30 Score=28.10 Aligned_cols=105 Identities=16% Similarity=0.103 Sum_probs=57.9
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHH-HHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccC
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVY-TALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHES 165 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (257)
++.+...++++.|..++.+.++. .|+...| ..-..++.+.+++..|+.=+....+..+. -...|..=..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHH
Confidence 44455667778888888777765 4544433 33336677777777777666665554322 12222222333444455
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 041259 166 FKEALNLKNRMTEVGVDLDLNAYTSLVWGLS 196 (257)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 196 (257)
+.+|+..|+.... +.|+..-....+.-|-
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 5555555555544 3566665555555443
No 431
>PRK09462 fur ferric uptake regulator; Provisional
Probab=63.24 E-value=42 Score=22.40 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=27.9
Q ss_pred HHhcCCcccHHHHHHHHHHHHhc-CcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCc
Q 041259 71 MLDSRIEVTVVTFCVLIDGLCKS-GLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNC 130 (257)
Q Consensus 71 ~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (257)
+.+.|..++.. -..++..+... +..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 33445444332 22333334332 3455566666666655544444444444555555544
No 432
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.99 E-value=60 Score=24.03 Aligned_cols=82 Identities=20% Similarity=0.177 Sum_probs=38.2
Q ss_pred HhcCcHHHHHHHHHhcccCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHH-HHHHHHHcccCHHH
Q 041259 91 CKSGLVREAIDYFGRMPDFGLHPNV-AVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYT-ALIDGYLKHESFKE 168 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ 168 (257)
.....++.|...|.+.+.. .|+. .-|+.-+.++.+..+++.+..=-....+ +.|+..--. .+-.+......++.
T Consensus 21 f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence 3334455555555554433 3544 3334445555555566555443333333 233433222 23333444555566
Q ss_pred HHHHHHHH
Q 041259 169 ALNLKNRM 176 (257)
Q Consensus 169 a~~~~~~~ 176 (257)
|...+.+.
T Consensus 97 aI~~Lqra 104 (284)
T KOG4642|consen 97 AIKVLQRA 104 (284)
T ss_pred HHHHHHHH
Confidence 66555554
No 433
>PRK09857 putative transposase; Provisional
Probab=62.71 E-value=67 Score=24.53 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=46.5
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc
Q 041259 153 YTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD 219 (257)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (257)
+..++......++.++..++++.+.+. .+.......++..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 455665556677777777777777665 333444555677777788888888889999998887655
No 434
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=62.59 E-value=25 Score=19.48 Aligned_cols=47 Identities=23% Similarity=0.259 Sum_probs=21.0
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH-----hcCCHHHHHHH
Q 041259 196 SRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHY-----ERGNMDEAIEL 242 (257)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~a~~~ 242 (257)
.+.|++=+|-++++.+=.....|....+..+|+... +.|+.+.|.++
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345555555555555543212223344444444332 34555555544
No 435
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=62.50 E-value=13 Score=16.40 Aligned_cols=27 Identities=7% Similarity=0.063 Sum_probs=12.9
Q ss_pred ChhhHHHHHHHHHHcCCCccHHHHHHHH
Q 041259 25 KFEDSKLLLSEMKENGLTANTVICTTLM 52 (257)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 52 (257)
+.+.|..+|+.+.... +-+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 4455555665555432 23444444433
No 436
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=61.39 E-value=59 Score=23.47 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=15.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 226 LLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
+.....+.|++++|.+.|..+...+
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3344456677777777776666544
No 437
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=61.36 E-value=45 Score=22.11 Aligned_cols=67 Identities=7% Similarity=0.068 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHcccC---HHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 148 PDTTAYTALIDGYLKHES---FKEALNLKNRMTEVG-VDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
++..+--.+..++.+..+ ..+...+++.+.+.. ..-.......|.-++.+.++++.+.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344444455555555443 334455666655421 1112233344455566666677766666666654
No 438
>PRK11619 lytic murein transglycosylase; Provisional
Probab=60.16 E-value=1.2e+02 Score=26.45 Aligned_cols=118 Identities=11% Similarity=0.058 Sum_probs=67.5
Q ss_pred cCcHHHHHHHHHHhhhCC-CCCC--HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHH
Q 041259 128 KNCIERARNLFDEMPKRD-MIPD--TTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEA 204 (257)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 204 (257)
..+.+.|...+....... ..+. ..++..+.......+...++...+....... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345577777777653332 2111 1223333333333322445555555433221 2445556666676788888888
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 205 RVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
...+..|.... .-...-...+.+++...|+.++|...|..+..
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888775432 22334445577777778999999998888743
No 439
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=59.99 E-value=1.3e+02 Score=26.96 Aligned_cols=89 Identities=16% Similarity=0.081 Sum_probs=52.3
Q ss_pred HHcccCHHHHHHHHHHHHHcCCCccH-------HHHHHH-HHHHHhcCcHHHHHHHHHHHHhC----CCCCcHHHHHHHH
Q 041259 160 YLKHESFKEALNLKNRMTEVGVDLDL-------NAYTSL-VWGLSRCGHLQEARVLFHEMIGR----GILPDEILCISLL 227 (257)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 227 (257)
.....++.+|..++.++...-..|+. ..++.+ .......|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567777887777766543222221 122222 12234567888888887777654 1233445566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 041259 228 KKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.+..-.|++++|..+..+..+
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHH
Confidence 777777888888777665543
No 440
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=59.46 E-value=80 Score=24.35 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcCcHHHH
Q 041259 185 LNAYTSLVWGLSRCGHLQEA 204 (257)
Q Consensus 185 ~~~~~~li~~~~~~~~~~~a 204 (257)
..+|..|+.+++..|+.+..
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34566666666666665543
No 441
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=59.17 E-value=1e+02 Score=25.57 Aligned_cols=98 Identities=14% Similarity=0.251 Sum_probs=68.5
Q ss_pred CCHHHH-HHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhC-CCCCcHHHH
Q 041259 148 PDTTAY-TALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLS--RCGHLQEARVLFHEMIGR-GILPDEILC 223 (257)
Q Consensus 148 ~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 223 (257)
|+..++ +.++..+...|-..+|...+..+... ++|+...|.-+|..=. ..-+...+..+++.+... | .++..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 344444 45677777888889999999988877 5677788877765432 223377788888888764 5 577777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 224 ISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 224 ~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
-..+.--...|..+.+-.++.+.++
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 7666666678888887777766543
No 442
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.17 E-value=47 Score=21.55 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=49.0
Q ss_pred HHHHhcCChhhHHHHHHHHHHc-----CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcc-cHHHHHHHHHHHH
Q 041259 18 WGLCIESKFEDSKLLLSEMKEN-----GLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEV-TVVTFCVLIDGLC 91 (257)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~ 91 (257)
..+-..+.-.....++++.... ....|......-+ .|++. .+.+.++|+.|...|+-. ....|......+.
T Consensus 34 ~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi-~ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le 110 (126)
T PF08311_consen 34 ENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWI-KYADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLE 110 (126)
T ss_dssp HHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHH-HHHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHH
T ss_pred HHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHH-HHHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 3333444444555555555432 1223433333322 23332 338888998888765443 4566777888888
Q ss_pred hcCcHHHHHHHHHh
Q 041259 92 KSGLVREAIDYFGR 105 (257)
Q Consensus 92 ~~~~~~~a~~~~~~ 105 (257)
..|++++|.++|+.
T Consensus 111 ~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 111 KRGNFKKADEIYQL 124 (126)
T ss_dssp HTT-HHHHHHHHHH
T ss_pred HcCCHHHHHHHHHh
Confidence 89999999998875
No 443
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.33 E-value=1.2e+02 Score=26.14 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=8.3
Q ss_pred CcHHHHHHHHHHHHhCCC
Q 041259 199 GHLQEARVLFHEMIGRGI 216 (257)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~ 216 (257)
|+...+..+++++...|.
T Consensus 264 ~d~~~al~~l~~l~~~G~ 281 (618)
T PRK14951 264 GDGRTVVETADELRLNGL 281 (618)
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 444444444444444443
No 444
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=58.01 E-value=20 Score=16.84 Aligned_cols=25 Identities=16% Similarity=0.285 Sum_probs=14.9
Q ss_pred cHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 041259 200 HLQEARVLFHEMIGRGILPDEILCISL 226 (257)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l 226 (257)
.++.|..+|++.+.- .|++.+|...
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHH
Confidence 356667777776653 4666655543
No 445
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.89 E-value=49 Score=21.44 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041259 203 EARVLFHEMIGRGILP-DEILCISLLKKHYERGNMDEAIELQNE 245 (257)
Q Consensus 203 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (257)
.+.++|..|...|+-- ....|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6677777777665432 345566666667777777777777654
No 446
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=57.37 E-value=75 Score=23.37 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=39.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCChHHHHHHHHHHHh
Q 041259 15 TIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFK-AGEPSEALSLLDEMLD 73 (257)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 73 (257)
.++..+-+.++++++.+.++++...+...+..-.+.+-.+|-. -|....+++++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4667778889999999999999988777777766666666633 2444556666655543
No 447
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=56.88 E-value=77 Score=23.38 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcC-------------CC------------ccH
Q 041259 131 IERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVG-------------VD------------LDL 185 (257)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~------------~~~ 185 (257)
.++|..+++.-... . .+..+...+..++...|+...+..+++.+.... .. .++
T Consensus 115 i~kA~~~L~~~~~~-~-~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~v 192 (246)
T PF07678_consen 115 INKALNYLERHLDN-I-QDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDV 192 (246)
T ss_dssp HHHHHHHHHHHHGC-T-SSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHH
T ss_pred HHHHHHHHHHhccc-c-CCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHH
Confidence 34555555544222 2 255555555555566666677777777664320 00 123
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 186 NAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
++-...+-++.+.++.+.+..+.+.+.++
T Consensus 193 EtTaYaLLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 193 ETTAYALLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34344445555668888888888888764
No 448
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=56.78 E-value=87 Score=23.96 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCcccH
Q 041259 6 IKADLPLYGTIIWGLCIESKFEDSKLLLSEMKENG-LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS----RIEVTV 80 (257)
Q Consensus 6 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~ 80 (257)
++.|...+|.++. -...++++--+-+++..+.+ -.--..++..+...|+.-++.+.+.++..+..+. |.+.|.
T Consensus 77 ikfD~~~~n~l~k--kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv 154 (412)
T COG5187 77 IKFDRGRMNTLLK--KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV 154 (412)
T ss_pred eehhhHHHHHHHH--hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh
Q ss_pred HHHHH-HHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh--cCcHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 041259 81 VTFCV-LIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK--KNCIERARNLFDEMPKRDMIPDTTAYTALI 157 (257)
Q Consensus 81 ~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (257)
..... +.-.|....-.++.++..+.+.+.|..-+..---..-.+... ..++.+|-.++-+....--......|...+
T Consensus 155 ~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~v 234 (412)
T COG5187 155 FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAV 234 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHH
Q ss_pred HHHHccc
Q 041259 158 DGYLKHE 164 (257)
Q Consensus 158 ~~~~~~~ 164 (257)
+...-.|
T Consensus 235 rYa~~~G 241 (412)
T COG5187 235 RYAIFCG 241 (412)
T ss_pred HHHHHhh
No 449
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=56.62 E-value=88 Score=23.96 Aligned_cols=109 Identities=13% Similarity=0.033 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhhCCC----CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHH
Q 041259 131 IERARNLFDEMPKRDM----IPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARV 206 (257)
Q Consensus 131 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 206 (257)
.+.|.+.|+.....+. ..+......+.....+.|+.+.-..+++..... .+...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4567777777665311 335555566666666777765555555554443 256666777888888888888888
Q ss_pred HHHHHHhCC-CCCcHHHHHHHHHHHHhcCCH--HHHHHHHH
Q 041259 207 LFHEMIGRG-ILPDEILCISLLKKHYERGNM--DEAIELQN 244 (257)
Q Consensus 207 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~ 244 (257)
+++.....+ ++ +... ..++.++...+.. +.+.+.+.
T Consensus 223 ~l~~~l~~~~v~-~~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVR-SQDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS--TTTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccc-cHHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 888777753 33 2222 3344444423333 55555444
No 450
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=56.21 E-value=96 Score=24.28 Aligned_cols=165 Identities=12% Similarity=0.050 Sum_probs=84.3
Q ss_pred CCccHH---HHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCC
Q 041259 41 LTANTV---ICTTLMDAYFKAG---EPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPN 114 (257)
Q Consensus 41 ~~~~~~---~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 114 (257)
++|+.. .++++++.-.... .++.|..++.-=... ..-.......+.+.+++.++.+.+..+-+.+... |.
T Consensus 122 FkP~~~klA~fhA~v~~~L~~p~S~yye~a~~Ylsg~~~~-~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al~~l---P~ 197 (340)
T PF12069_consen 122 FKPSQEKLAMFHAQVRAQLGQPASQYYEHAQAYLSGQLGW-DNWQTLGLQGIADICARLDQEDNAQLLRKALPHL---PP 197 (340)
T ss_pred cCCChHHHHHHHHHHHHHcCCCcchhHHHHHHHHcCCcch-hHHHHhhhhHHHHHHHHhcccchHHHHHHHHhhC---Ch
Confidence 556553 5777777654432 355555544211100 0001122344667778877777665555555432 43
Q ss_pred HHHHHHHHHHHHhcCcHH-HHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHH-H
Q 041259 115 VAVYTALIDGLCKKNCIE-RARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSL-V 192 (257)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i 192 (257)
.. ..++..++-...-.+ -+..+++.+... ||......++++.............+..+.+.....+......+ .
T Consensus 198 ~v-l~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IAg 273 (340)
T PF12069_consen 198 EV-LYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPEVLIAIAG 273 (340)
T ss_pred HH-HHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChHHHHHHHh
Confidence 33 334444444333222 233444444443 68888888888887776666665556666655433333333322 2
Q ss_pred HHHHhcCcHHHHHHHHHHHHh
Q 041259 193 WGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~ 213 (257)
++.....+.+.+..+++++-.
T Consensus 274 R~W~~L~d~~~l~~fle~LA~ 294 (340)
T PF12069_consen 274 RCWQWLKDPQLLRLFLERLAQ 294 (340)
T ss_pred cCchhcCCHHHHHHHHHHHHc
Confidence 333334455555555555544
No 451
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=56.15 E-value=1.6e+02 Score=26.94 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHccc--CHHHHHHHHHHHHHc
Q 041259 150 TTAYTALIDGYLKHE--SFKEALNLKNRMTEV 179 (257)
Q Consensus 150 ~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 179 (257)
..-+..++.+|.+.+ ++++|+.+...+.+.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 345567788888887 899999999988865
No 452
>PRK13342 recombination factor protein RarA; Reviewed
Probab=55.93 E-value=1.1e+02 Score=24.78 Aligned_cols=56 Identities=23% Similarity=0.119 Sum_probs=33.0
Q ss_pred ccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhCCCCC
Q 041259 163 HESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGH-----LQEARVLFHEMIGRGILP 218 (257)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 218 (257)
..+.+.|...+..|.+.|..|....-..++.++...|. ...|...++....-|++-
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe 303 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPE 303 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcH
Confidence 46788888888888888877665544444444444332 333444455555556543
No 453
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=55.75 E-value=1e+02 Score=24.44 Aligned_cols=30 Identities=20% Similarity=0.136 Sum_probs=20.6
Q ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHhc
Q 041259 77 EVTVVTFCVLIDGLCKSGLVREAIDYFGRM 106 (257)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 106 (257)
+-.+.++-.+-..+...|+.+.|.+++++.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 335566666667777788877777776665
No 454
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=55.08 E-value=1.2e+02 Score=24.85 Aligned_cols=66 Identities=8% Similarity=0.059 Sum_probs=32.8
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041259 5 NIKADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSR 75 (257)
Q Consensus 5 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (257)
+.+|+...|. +.+.+.+-.+.+-. ..+....+.||..+.+.+...++..-..+-...+|+-..+.+
T Consensus 148 dcrpkg~~Fh-~FRLLlqYHdPelc----~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa 213 (669)
T KOG3636|consen 148 DCRPKGQIFH-LFRLLLQYHDPELC----NHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA 213 (669)
T ss_pred CCCCCCccch-HHHHHHHhcCHHHh----hhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4445444443 33444444444322 222333455666666666665555555555556665555543
No 455
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=55.05 E-value=1.9e+02 Score=27.29 Aligned_cols=152 Identities=15% Similarity=0.000 Sum_probs=89.8
Q ss_pred hcCChHHHHH------HHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhc-------ccCCCCCCHHHHHHHHH
Q 041259 57 KAGEPSEALS------LLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRM-------PDFGLHPNVAVYTALID 123 (257)
Q Consensus 57 ~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l~~ 123 (257)
..|.+.++.+ ++......-.++....|..+...+.+.++.++|...-... ....-+.+...|..+..
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 3445554544 5554333323456677888888888999999888765443 11221223445666665
Q ss_pred HHHhcCcHHHHHHHHHHhhhC-----CC-CCC-HHHHHHHHHHHHcccCHHHHHHHHHHHHHcC-----C--CccHHHHH
Q 041259 124 GLCKKNCIERARNLFDEMPKR-----DM-IPD-TTAYTALIDGYLKHESFKEALNLKNRMTEVG-----V--DLDLNAYT 189 (257)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~ 189 (257)
.+...+....|...+.+.... |. .|. ..+++.+-..+...++.+.|.++.+.+.+.. . -.+..++.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~ 1103 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYH 1103 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHH
Confidence 666666777777766654321 11 233 3444444444555688888888888776531 1 13456677
Q ss_pred HHHHHHHhcCcHHHHHHHH
Q 041259 190 SLVWGLSRCGHLQEARVLF 208 (257)
Q Consensus 190 ~li~~~~~~~~~~~a~~~~ 208 (257)
.+.+.+...+++..|....
T Consensus 1104 ~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1104 ALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 7777777777776655443
No 456
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=55.05 E-value=50 Score=20.61 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhcc
Q 041259 84 CVLIDGLCKSGLVREAIDYFGRMP 107 (257)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~ 107 (257)
..++..|...++.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 345556666677777777666653
No 457
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.02 E-value=89 Score=23.20 Aligned_cols=116 Identities=15% Similarity=0.010 Sum_probs=70.2
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccH-HHHHHHHHHHHhcCcHH
Q 041259 20 LCIESKFEDSKLLLSEMKENGLTANT-VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTV-VTFCVLIDGLCKSGLVR 97 (257)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~ 97 (257)
|.....++.|..-+.+.+.. .|+. .-|..-+.++.+..+++.+..=-.+.++. .|+. -....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 34456788888877776664 4665 44556667777888888887766666654 3443 33444556667777888
Q ss_pred HHHHHHHhcc----cCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 041259 98 EAIDYFGRMP----DFGLHPNVAVYTALIDGLCKKNCIERARNLFD 139 (257)
Q Consensus 98 ~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 139 (257)
+|...+.+.. ...+.+.......|..+--..=...+..++.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 8888887763 33334444555565554443333444444433
No 458
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=53.63 E-value=89 Score=23.08 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-----C--------CC------------CcHH
Q 041259 167 KEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR-----G--------IL------------PDEI 221 (257)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~--------~~------------~~~~ 221 (257)
++|..+++.-... ..++.+...+..++...|+.+.+..+++.+... + .. .+++
T Consensus 116 ~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vE 193 (246)
T PF07678_consen 116 NKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVE 193 (246)
T ss_dssp HHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHH
T ss_pred HHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHH
Confidence 4555555544222 236777777777777888888888888877642 0 00 0133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 222 LCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
+-...+.++.+.++.+.+..+.+-+.++
T Consensus 194 tTaYaLLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 194 TTAYALLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3344455666779999999999988774
No 459
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=53.57 E-value=1e+02 Score=23.85 Aligned_cols=80 Identities=20% Similarity=0.189 Sum_probs=47.7
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHH----------HHHH--HHHhcCCHHHH
Q 041259 172 LKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCI----------SLLK--KHYERGNMDEA 239 (257)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------~l~~--~~~~~g~~~~a 239 (257)
+-.-..+.|+..+...+..++.. ..|+..+|+.+++.+-..|-+.+...-+ .+.. -.+..+++...
T Consensus 197 L~~Ia~~E~v~~d~~al~~I~~~--S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~~~ 274 (346)
T KOG0989|consen 197 LEKIASKEGVDIDDDALKLIAKI--SDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLELALSADTPNT 274 (346)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHHHHHccChHHH
Confidence 33334456666677777766654 4577777777777665544333311111 1111 23457888888
Q ss_pred HHHHHHHHhCCCCC
Q 041259 240 IELQNEMMGRGLLS 253 (257)
Q Consensus 240 ~~~~~~m~~~~~~~ 253 (257)
.+..+++.+.|+.|
T Consensus 275 v~~~Rei~~sg~~~ 288 (346)
T KOG0989|consen 275 VKRVREIMRSGYSP 288 (346)
T ss_pred HHHHHHHHHhccCH
Confidence 88888888877655
No 460
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=53.01 E-value=1.1e+02 Score=23.78 Aligned_cols=66 Identities=6% Similarity=-0.008 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 041259 113 PNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIP---DTTAYTALIDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
....+|..++..+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345577888888999999999999988887654221 334445556666778888888888877766
No 461
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=52.92 E-value=2.7e+02 Score=28.47 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 185 LNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 185 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
..+|-...+.....|+++.|...+-...+.+ -+..+.-.++-....|+...|+.++++..+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4678888888888999999998887777654 34455667788899999999999999988643
No 462
>PRK10941 hypothetical protein; Provisional
Probab=52.86 E-value=98 Score=23.36 Aligned_cols=77 Identities=13% Similarity=-0.011 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCC-CCCCHHHHHHHHHHH
Q 041259 48 CTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFG-LHPNVAVYTALIDGL 125 (257)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 125 (257)
.+.+-.+|.+.++++.|+++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+.. -.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 3456667888888999998888888763 3356666667777888888888887776665432 134444444444443
No 463
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=52.54 E-value=91 Score=22.92 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=35.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh-cCcHHHHHHHHHhc
Q 041259 50 TLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCK-SGLVREAIDYFGRM 106 (257)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~ 106 (257)
.++..+-..++++++...++++...+...+..-.+.+-.+|-. .|....+.+++..+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 4566677778888888888888877767777777766666643 24444455555444
No 464
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=52.36 E-value=41 Score=18.86 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHcC
Q 041259 152 AYTALIDGYLKHESFKEALNLKNRMTEVG 180 (257)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (257)
.++.++..++...-.+++...+.+..+.|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444444444444444444444443
No 465
>PHA03100 ankyrin repeat protein; Provisional
Probab=52.29 E-value=1.3e+02 Score=24.66 Aligned_cols=14 Identities=7% Similarity=0.079 Sum_probs=6.7
Q ss_pred HHHHHHhCCCCCCC
Q 041259 242 LQNEMMGRGLLSGS 255 (257)
Q Consensus 242 ~~~~m~~~~~~~~~ 255 (257)
+++.+.+.|..++.
T Consensus 265 iv~~Ll~~gad~n~ 278 (480)
T PHA03100 265 FVKYLLDLGANPNL 278 (480)
T ss_pred HHHHHHHcCCCCCc
Confidence 34444555554443
No 466
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=51.48 E-value=98 Score=22.96 Aligned_cols=103 Identities=15% Similarity=0.182 Sum_probs=61.6
Q ss_pred HHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHc-C-----------CCccHHHHHHHH
Q 041259 125 LCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEV-G-----------VDLDLNAYTSLV 192 (257)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~li 192 (257)
|.+..+.+--.++.+-....++.-+..-..+++ +...|+..+|+.-++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 333333333333443333444444444444443 45678888888887765431 1 246777777788
Q ss_pred HHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041259 193 WGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHY 231 (257)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (257)
..|.. +++++|.+++.++-+.|+.|... .+.+.+.+-
T Consensus 247 ~~~~~-~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K 283 (333)
T KOG0991|consen 247 QACLK-RNIDEALKILAELWKLGYSPEDI-ITTLFRVVK 283 (333)
T ss_pred HHHHh-ccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Confidence 77654 57899999999988888876543 333554433
No 467
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=51.22 E-value=2.2e+02 Score=26.91 Aligned_cols=155 Identities=14% Similarity=0.062 Sum_probs=94.4
Q ss_pred HHhcCcHHHHHH------HHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh-------hhCCCCCCHHHHHHH
Q 041259 90 LCKSGLVREAID------YFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEM-------PKRDMIPDTTAYTAL 156 (257)
Q Consensus 90 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l 156 (257)
....|.+.++.+ ++......-.++....|..+...+.+.++.++|...-... ...+..-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 334455555555 5543222222445667888888999999999998765443 222222244566666
Q ss_pred HHHHHcccCHHHHHHHHHHHHHc-----C--CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-----CC--CCcHHH
Q 041259 157 IDGYLKHESFKEALNLKNRMTEV-----G--VDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR-----GI--LPDEIL 222 (257)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~ 222 (257)
........+...|...+.+.... | .+|...+++.+-..+...++++.|.++.+.+.+. |. -.+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 66666777777887777666542 2 2333444454444445558889999988887753 21 224556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 041259 223 CISLLKKHYERGNMDEAIELQN 244 (257)
Q Consensus 223 ~~~l~~~~~~~g~~~~a~~~~~ 244 (257)
+..+.+.+...+++..|....+
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHh
Confidence 7777777777777777665544
No 468
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=51.13 E-value=1.1e+02 Score=23.59 Aligned_cols=16 Identities=13% Similarity=0.380 Sum_probs=6.7
Q ss_pred HHHHHHHHHHcccCHH
Q 041259 152 AYTALIDGYLKHESFK 167 (257)
Q Consensus 152 ~~~~l~~~~~~~~~~~ 167 (257)
+|.-|+.+++..|+.+
T Consensus 323 ~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSE 338 (412)
T ss_pred hhhHHHHHHhcCChHH
Confidence 3444444444444433
No 469
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.06 E-value=48 Score=27.06 Aligned_cols=105 Identities=15% Similarity=0.040 Sum_probs=69.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGLTANTV-ICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGL 95 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (257)
...+...+.++.|..++..+++. .||-. .|..-..++.+.+++..|+.=+.+.++.. +-....|-.-..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 45566778999999999999886 45443 44444477888899988888777777653 1123334334455556667
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 041259 96 VREAIDYFGRMPDFGLHPNVAVYTALIDGLC 126 (257)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (257)
+.+|+..|+..... .|+..-....+.-|-
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 77777777776654 577666666665543
No 470
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=51.03 E-value=38 Score=18.05 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=11.7
Q ss_pred HHHHHhcCcHHHHHHHHHHHHh
Q 041259 192 VWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 192 i~~~~~~~~~~~a~~~~~~~~~ 213 (257)
.-++.+.|++++|.+..+.+++
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3344555566666665555555
No 471
>PHA03100 ankyrin repeat protein; Provisional
Probab=50.72 E-value=1.4e+02 Score=24.51 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=10.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcc
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGLTAN 44 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~ 44 (257)
+...++.|+.+ +++.+.+.|..++
T Consensus 39 L~~A~~~~~~~----ivk~Ll~~g~~~~ 62 (480)
T PHA03100 39 LYLAKEARNID----VVKILLDNGADIN 62 (480)
T ss_pred hhhhhccCCHH----HHHHHHHcCCCCC
Confidence 33344445443 3344444554443
No 472
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.62 E-value=1.5e+02 Score=24.88 Aligned_cols=20 Identities=5% Similarity=-0.072 Sum_probs=10.9
Q ss_pred CcHHHHHHHHHHHHhCCCCC
Q 041259 199 GHLQEARVLFHEMIGRGILP 218 (257)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~ 218 (257)
++.+.+..+++++...|..|
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~ 278 (509)
T PRK14958 259 KAGDRLLGCVTRLVEQGVDF 278 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 45555555555555555443
No 473
>PRK10941 hypothetical protein; Provisional
Probab=50.30 E-value=1.1e+02 Score=23.13 Aligned_cols=78 Identities=8% Similarity=-0.014 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCcHHHHHHHHHHH
Q 041259 152 AYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRG-ILPDEILCISLLKKH 230 (257)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 230 (257)
..+.+-.+|.+.++++.|+.+.+.+....+. ++.-+.--.-.|.+.|.+..|..=++..++.- -.|+.......+...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 3456666778888888888888888876433 55556656666788888888888888777652 234444444444433
No 474
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=49.23 E-value=99 Score=22.35 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=14.4
Q ss_pred HHHHHHHhcCcHHHHHHHHHhcccC
Q 041259 85 VLIDGLCKSGLVREAIDYFGRMPDF 109 (257)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (257)
.+.....+.|+.++|.+.|.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3445555566666666666666543
No 475
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=49.10 E-value=1.6e+02 Score=24.73 Aligned_cols=73 Identities=12% Similarity=0.177 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcC------C----------CccHHHHHHHHHHHHhcCcHHHHHHH
Q 041259 144 RDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVG------V----------DLDLNAYTSLVWGLSRCGHLQEARVL 207 (257)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~----------~~~~~~~~~li~~~~~~~~~~~a~~~ 207 (257)
.|+..+......++. ...|+...|...++++...+ + .++....-.++.+.. .|+.++|..+
T Consensus 203 egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~-~~d~~~Al~~ 279 (507)
T PRK06645 203 ENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYII-HRETEKAINL 279 (507)
T ss_pred cCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHH
Confidence 344445454444443 23466666666666653321 1 011222223333332 3566666666
Q ss_pred HHHHHhCCCCCc
Q 041259 208 FHEMIGRGILPD 219 (257)
Q Consensus 208 ~~~~~~~~~~~~ 219 (257)
++++...|..|.
T Consensus 280 l~~L~~~g~~~~ 291 (507)
T PRK06645 280 INKLYGSSVNLE 291 (507)
T ss_pred HHHHHHcCCCHH
Confidence 666666655433
No 476
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.97 E-value=1.7e+02 Score=24.95 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=30.1
Q ss_pred HHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH-cccCHHHHHHHHHHHH
Q 041259 123 DGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYL-KHESFKEALNLKNRMT 177 (257)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 177 (257)
..+.+.|.+..|.++-+-+...++.-|+.....+|..|+ +..++.-.+++++...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344556666666666666655554445555555555543 4455555555555443
No 477
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=48.92 E-value=89 Score=21.74 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHhcC
Q 041259 170 LNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRG-ILPDEILCISLLKKHYERG 234 (257)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 234 (257)
..+.+++.+.|+ +..+....+..+......+.|..++..-.... ..|+..-...+...+.+.|
T Consensus 88 ~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L~~rG 151 (174)
T COG2137 88 ARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFKRENKPPDKKEKAKIQRFLLRRG 151 (174)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhCccccCcchhHHHHHHHHHHHcC
Confidence 344455555553 33444444443444444444444444333322 2334333344444444343
No 478
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.64 E-value=67 Score=20.20 Aligned_cols=26 Identities=35% Similarity=0.495 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 041259 48 CTTLMDAYFKAGEPSEALSLLDEMLD 73 (257)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (257)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44555555555555555555555543
No 479
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=48.43 E-value=1.3e+02 Score=23.61 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 041259 48 CTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDG 89 (257)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (257)
|..+++.....|.++.++.+|++....|..|-...-..++..
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 444444445555555555555555555555544444444443
No 480
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.38 E-value=1.5e+02 Score=24.06 Aligned_cols=55 Identities=13% Similarity=0.033 Sum_probs=33.2
Q ss_pred cCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccC-----HHHHHHHHHHHHHcCCC
Q 041259 128 KNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHES-----FKEALNLKNRMTEVGVD 182 (257)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 182 (257)
..+.+.|+..+..|.+.|..|....-..++.++-..|. ..-|...++.....|.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 47888888888888888877665554444444443332 22344445555556654
No 481
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=48.34 E-value=1.1e+02 Score=22.44 Aligned_cols=110 Identities=14% Similarity=0.090 Sum_probs=58.6
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCC-CCCHHHHH--HHHHHHHcccCHHHHHHHHHHHH
Q 041259 101 DYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDM-IPDTTAYT--ALIDGYLKHESFKEALNLKNRMT 177 (257)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~ 177 (257)
+..+++... .+...-++.|+--|.-...+.+|-..|..-..-.. ..+..+++ .-|+.....|+.+.|.+....+.
T Consensus 14 ~w~~~~~~~--~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 14 EWEEQLMKV--SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred hhHHHHhcc--CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 333444432 45566667776666666666666666554322211 22444433 45666778888888888877765
Q ss_pred HcCCCccHHHHHHHHH----HHHhcCcHHHHHHHHHHHH
Q 041259 178 EVGVDLDLNAYTSLVW----GLSRCGHLQEARVLFHEMI 212 (257)
Q Consensus 178 ~~~~~~~~~~~~~li~----~~~~~~~~~~a~~~~~~~~ 212 (257)
..-+.-|...+-.+.. -..+.|..++|.++.+.=.
T Consensus 92 PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 92 PEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 4323333323322221 2345666666666655433
No 482
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=47.85 E-value=1.4e+02 Score=23.70 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=25.0
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041259 42 TANTVICTTLMDAYFKAGEPSEALSLLDEML 72 (257)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (257)
|--..+.-.+...+...|+.+.|.+++++.+
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566777888888999999988888887764
No 483
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.51 E-value=1.7e+02 Score=24.57 Aligned_cols=84 Identities=14% Similarity=0.191 Sum_probs=50.4
Q ss_pred HHHHHHHHH-HHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC------------cHHHHHHHHHHHHhc
Q 041259 167 KEALNLKNR-MTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILP------------DEILCISLLKKHYER 233 (257)
Q Consensus 167 ~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~ 233 (257)
++....+.. +.+.|+..+......++... .|+...+...++.+...+-.. .......++.++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 344444443 33456666666666655443 477777777776655432111 122234455555 46
Q ss_pred CCHHHHHHHHHHHHhCCCCC
Q 041259 234 GNMDEAIELQNEMMGRGLLS 253 (257)
Q Consensus 234 g~~~~a~~~~~~m~~~~~~~ 253 (257)
++.++|+.+++++...|..|
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 89999999999999888654
No 484
>PRK14700 recombination factor protein RarA; Provisional
Probab=47.04 E-value=1.3e+02 Score=23.12 Aligned_cols=64 Identities=17% Similarity=0.117 Sum_probs=44.2
Q ss_pred HHHHHHHH---hcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCc-----HHHHHHHHHHhhhCCCC
Q 041259 84 CVLIDGLC---KSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNC-----IERARNLFDEMPKRDMI 147 (257)
Q Consensus 84 ~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 147 (257)
.-+++++. +..|.+.|+-++.+|.+.|-.|....-..++.++-.-|. ...|...++....-|.+
T Consensus 127 Yd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 127 YEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred HHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 34556654 457899999999999999877776666666666666552 44566666666666654
No 485
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=46.93 E-value=1.6e+02 Score=24.11 Aligned_cols=88 Identities=17% Similarity=0.075 Sum_probs=45.0
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHH--------HHhcCChHHHHHHHHHHHhcC
Q 041259 4 KNIKADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDA--------YFKAGEPSEALSLLDEMLDSR 75 (257)
Q Consensus 4 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~ 75 (257)
..+.||..+.|.+...++..-..+-...+|+-..+.+- |-...+-.++-. -.+...-++++++++.|...-
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD-PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD-PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 45667777777777776666666667777776666542 222222222211 012233455666666655432
Q ss_pred CcccHHHHHHHHHHHHh
Q 041259 76 IEVTVVTFCVLIDGLCK 92 (257)
Q Consensus 76 ~~~~~~~~~~ll~~~~~ 92 (257)
--.|+.-+-.|...|+.
T Consensus 256 ~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYSD 272 (669)
T ss_pred ccccchhHHHHHHHHhh
Confidence 12244444455554443
No 486
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=45.80 E-value=1.3e+02 Score=22.61 Aligned_cols=41 Identities=12% Similarity=0.014 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 041259 13 YGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAY 55 (257)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 55 (257)
.+.++..+.+.+....|..+.+.+... +.=..+...+++..
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~v 125 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTV 125 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHH
Confidence 455777777777777777777766542 33344444555443
No 487
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=45.59 E-value=1.8e+02 Score=24.31 Aligned_cols=99 Identities=8% Similarity=0.113 Sum_probs=71.4
Q ss_pred CCHHHH-HHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHc-CCCccHHHH
Q 041259 113 PNVAVY-TALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLK--HESFKEALNLKNRMTEV-GVDLDLNAY 188 (257)
Q Consensus 113 ~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~ 188 (257)
|+..++ +.++..+.+.|-..+|..++..+... ++|+...|..+|+.-.. .-+..-+..+++.+... | .++..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 444333 45677778888999999999998876 45688888888765322 22366777888877654 4 577888
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 189 TSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 189 ~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
...+..=...|..+.+-.++.+..+.
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHHh
Confidence 87777777888888888877776653
No 488
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=45.58 E-value=36 Score=16.31 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 041259 223 CISLLKKHYERGNMDEAIELQN 244 (257)
Q Consensus 223 ~~~l~~~~~~~g~~~~a~~~~~ 244 (257)
+..+.-.+...|++++|+.+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3446667778899999999944
No 489
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=45.10 E-value=2.3e+02 Score=25.42 Aligned_cols=85 Identities=20% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC-------------CCCcHHHHHHHHHHHHhc
Q 041259 167 KEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRG-------------ILPDEILCISLLKKHYER 233 (257)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~ 233 (257)
+-...+-+.+.+.|+..+......+++.. .|+...|+.++++....+ -.++...+..++.++..
T Consensus 182 eIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~- 258 (830)
T PRK07003 182 HIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA- 258 (830)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc-
Q ss_pred CCHHHHHHHHHHHHhCCCCCC
Q 041259 234 GNMDEAIELQNEMMGRGLLSG 254 (257)
Q Consensus 234 g~~~~a~~~~~~m~~~~~~~~ 254 (257)
|+..+++.+++++...|+...
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 259 GDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred CCHHHHHHHHHHHHHhCCCHH
No 490
>PF15469 Sec5: Exocyst complex component Sec5
Probab=45.08 E-value=1e+02 Score=21.40 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=9.5
Q ss_pred HHHHHhcCcHHHHHHHHHHh
Q 041259 122 IDGLCKKNCIERARNLFDEM 141 (257)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~ 141 (257)
+.-+.+.|+++.+...|.+.
T Consensus 93 L~~~i~~~dy~~~i~dY~ka 112 (182)
T PF15469_consen 93 LRECIKKGDYDQAINDYKKA 112 (182)
T ss_pred HHHHHHcCcHHHHHHHHHHH
Confidence 33444455555555544443
No 491
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=45.05 E-value=60 Score=18.62 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=15.9
Q ss_pred cCChhhHHHHHHHHHHcCCCccHHHHHHHHHH
Q 041259 23 ESKFEDSKLLLSEMKENGLTANTVICTTLMDA 54 (257)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 54 (257)
.++.+.+.+++++....|.+|.......+..+
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~ 45 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPA 45 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45556666666666655544444443334333
No 492
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.75 E-value=1.2e+02 Score=22.14 Aligned_cols=107 Identities=14% Similarity=0.167 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCC---CHHHH--HHHHHHHHhcCcHHHHHHHHH
Q 041259 65 LSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHP---NVAVY--TALIDGLCKKNCIERARNLFD 139 (257)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~ 139 (257)
.++.+++.+ +.+...-+|.|+--|.-...+.+|-..|..- .|+.| +..++ ..-|......|+.++|.....
T Consensus 13 ~~w~~~~~~--~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in 88 (228)
T KOG2659|consen 13 EEWEEQLMK--VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVN 88 (228)
T ss_pred hhhHHHHhc--cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHH
Confidence 344444443 3455556666655555444455565666543 33333 33333 446777889999999999998
Q ss_pred HhhhCCCCCCHHHHHHHHHH----HHcccCHHHHHHHHHH
Q 041259 140 EMPKRDMIPDTTAYTALIDG----YLKHESFKEALNLKNR 175 (257)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~ 175 (257)
.+...-+.-|...+-.+... ..+.|..++|+++.+.
T Consensus 89 ~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 89 QLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 87644333343333333221 3456777777776654
No 493
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=44.74 E-value=47 Score=17.34 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=9.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCC
Q 041259 233 RGNMDEAIELQNEMMGRGLLS 253 (257)
Q Consensus 233 ~g~~~~a~~~~~~m~~~~~~~ 253 (257)
.|--.+++++.-++.+.|+.|
T Consensus 17 tgLd~etL~ici~L~e~GVnP 37 (48)
T PF12554_consen 17 TGLDRETLSICIELCENGVNP 37 (48)
T ss_pred CCCCHHHHHHHHHHHHCCCCH
Confidence 333344444444444444443
No 494
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.34 E-value=1.7e+02 Score=23.69 Aligned_cols=60 Identities=12% Similarity=0.144 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhC--C-----CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHH
Q 041259 118 YTALIDGLCKKNCIERARNLFDEMPKR--D-----MIPDTTAYTALIDGYLKHESFKEALNLKNRMT 177 (257)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (257)
...|++.++-.||+..|+++++.+.-. + ..-...++..+.-+|.-.+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888888888765321 1 11134456666777777888888888777653
No 495
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=44.20 E-value=70 Score=19.20 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041259 31 LLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEML 72 (257)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (257)
++|+-....|+..|...|..++....-.=.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555555555555555555555444444444555555443
No 496
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.10 E-value=1.2e+02 Score=22.05 Aligned_cols=119 Identities=11% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 041259 45 TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDG 124 (257)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (257)
...|...+.++.-..+ .+-.+.++.+......|+-... ++.++...|+.+.|+.+++...-. ..+......++..
T Consensus 76 p~~~~~~~~g~W~LD~-~~~~~A~~~L~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDH-GDFEEALELLSHPSLIPWFPDK--ILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA 150 (226)
T ss_pred CHHHHHHHHHHHHhCh-HhHHHHHHHhCCCCCCcccHHH--HHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH
Q ss_pred HHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH----cccCHHHHHHH
Q 041259 125 LCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYL----KHESFKEALNL 172 (257)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~ 172 (257)
..++.+.+|..+-+......- ...+..++..+. +.+..++...+
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~---~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELR---RRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhh---HHHHHHHHHHHHHHhhhhhHHHHHHhC
No 497
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=43.42 E-value=1.2e+02 Score=23.65 Aligned_cols=76 Identities=7% Similarity=0.098 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHH-HHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHH
Q 041259 112 HPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTA-LIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYT 189 (257)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (257)
..|+..|...+.-..+.+.+.+...++.+..+..+. |+..|-. -..-+...++++.+..+|......+.. ++..|.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~-nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw~ 180 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL-NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIWI 180 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHHH
Confidence 456777777777666777888888888888877654 5555543 223355678888888888887776544 444443
No 498
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=42.89 E-value=1e+02 Score=23.93 Aligned_cols=75 Identities=8% Similarity=0.029 Sum_probs=55.5
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHH-HHHHHHhcCChHHHHHHHHHHHhcCCcccHHHH
Q 041259 7 KADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTT-LMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTF 83 (257)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (257)
.-|+..|...+.-..+.|.+.+...++.++.... |.|+..|-. .-.-+...++++.+..+|..-+..+.. ++..|
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw 179 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIW 179 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHH
Confidence 3477788888888888899999999999988864 667777754 334466778999999999888765432 34444
No 499
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=42.86 E-value=97 Score=20.42 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC
Q 041259 187 AYTSLVWGLSRCGHLQEARVLFHEMIGRGIL 217 (257)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (257)
.+..++--+...|+++.|..+.+.++++|..
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 3344444556778888888888888887753
No 500
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=42.15 E-value=2.1e+02 Score=24.16 Aligned_cols=60 Identities=20% Similarity=0.119 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 041259 119 TALIDGLCKKNCIERARNLFDEMPKRDMI-PDTTAYTALIDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
..++.-|.+.++.++|..++..|-=.... -.-...+.++....+..--.+-+..++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35677788888888888888777422110 0123344445555555433444444444443
Done!