Query 041259
Match_columns 257
No_of_seqs 567 out of 1292
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 08:39:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041259.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041259hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 5.8E-38 2E-42 247.8 23.5 206 28-233 8-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 6.4E-38 2.2E-42 247.5 23.5 197 2-198 17-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 5.4E-26 1.9E-30 184.9 27.9 237 7-248 302-578 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1.6E-25 5.3E-30 182.2 29.4 219 7-230 370-594 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 4.8E-21 1.6E-25 148.0 29.6 227 17-249 142-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 4.2E-21 1.4E-25 148.3 28.6 235 9-248 66-333 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.6E-20 5.5E-25 147.6 26.5 235 8-249 24-286 (450)
8 4eqf_A PEX5-related protein; a 99.9 1.6E-20 5.5E-25 143.8 23.8 235 9-249 64-310 (365)
9 2y4t_A DNAJ homolog subfamily 99.9 5.8E-20 2E-24 144.5 27.4 236 9-248 59-357 (450)
10 3hym_B Cell division cycle pro 99.9 1.4E-19 4.9E-24 136.4 26.9 240 5-249 17-265 (330)
11 3spa_A Mtrpol, DNA-directed RN 99.9 5.1E-22 1.7E-26 163.2 12.2 151 9-164 126-286 (1134)
12 3hym_B Cell division cycle pro 99.9 2.7E-19 9.2E-24 134.9 26.3 236 9-249 55-299 (330)
13 1fch_A Peroxisomal targeting s 99.9 3.6E-19 1.2E-23 136.3 26.5 236 9-249 63-314 (368)
14 3spa_A Mtrpol, DNA-directed RN 99.9 1.5E-21 5.2E-26 160.4 13.2 118 115-232 127-248 (1134)
15 3cv0_A Peroxisome targeting si 99.9 6.1E-19 2.1E-23 132.8 23.8 235 9-249 20-269 (327)
16 3ieg_A DNAJ homolog subfamily 99.9 3.7E-18 1.3E-22 130.0 28.4 236 9-250 2-264 (359)
17 4eqf_A PEX5-related protein; a 99.9 2.6E-19 8.9E-24 137.1 21.8 233 8-245 97-352 (365)
18 3cv0_A Peroxisome targeting si 99.9 3.9E-19 1.3E-23 133.8 21.7 234 9-247 54-313 (327)
19 1fch_A Peroxisomal targeting s 99.9 6.3E-19 2.2E-23 135.0 23.1 233 8-245 96-355 (368)
20 3uq3_A Heat shock protein STI1 99.8 1.3E-18 4.6E-23 126.5 23.6 226 10-249 5-236 (258)
21 2pl2_A Hypothetical conserved 99.8 1.1E-18 3.7E-23 124.1 20.6 209 8-246 3-211 (217)
22 3ieg_A DNAJ homolog subfamily 99.8 3.2E-17 1.1E-21 124.8 30.2 236 9-249 36-335 (359)
23 2pl2_A Hypothetical conserved 99.8 1.7E-18 5.7E-23 123.1 20.9 164 9-177 38-212 (217)
24 3mkr_A Coatomer subunit epsilo 99.8 1.4E-17 4.8E-22 123.4 26.0 224 12-249 36-264 (291)
25 1ouv_A Conserved hypothetical 99.8 1.6E-16 5.3E-21 116.9 30.3 224 9-250 5-252 (273)
26 3u4t_A TPR repeat-containing p 99.8 1.9E-17 6.5E-22 121.5 24.5 238 9-250 2-251 (272)
27 2gw1_A Mitochondrial precursor 99.8 8.3E-18 2.8E-22 134.2 24.0 236 8-248 37-366 (514)
28 2gw1_A Mitochondrial precursor 99.8 5.6E-18 1.9E-22 135.2 22.3 236 9-250 236-479 (514)
29 2ho1_A Type 4 fimbrial biogene 99.8 7.6E-17 2.6E-21 117.0 26.2 199 46-248 38-237 (252)
30 2vq2_A PILW, putative fimbrial 99.8 1.4E-16 4.7E-21 113.4 25.8 203 9-214 7-211 (225)
31 3mkr_A Coatomer subunit epsilo 99.8 2.7E-17 9.4E-22 121.9 22.3 218 17-249 6-229 (291)
32 2ho1_A Type 4 fimbrial biogene 99.8 1.2E-16 4.2E-21 115.9 25.2 207 10-222 37-244 (252)
33 2h6f_A Protein farnesyltransfe 99.8 3.7E-17 1.3E-21 125.2 22.8 233 10-249 97-348 (382)
34 2q7f_A YRRB protein; TPR, prot 99.8 1.7E-17 5.9E-22 119.6 18.9 201 9-214 22-222 (243)
35 3fp2_A TPR repeat-containing p 99.8 1.4E-16 4.6E-21 128.0 25.8 156 88-248 251-406 (537)
36 3fp2_A TPR repeat-containing p 99.8 1.8E-16 6E-21 127.3 25.4 233 12-250 245-492 (537)
37 2vq2_A PILW, putative fimbrial 99.8 3.1E-16 1.1E-20 111.6 23.7 205 42-249 5-211 (225)
38 2q7f_A YRRB protein; TPR, prot 99.8 5.3E-17 1.8E-21 117.1 19.2 202 43-249 21-222 (243)
39 2ond_A Cleavage stimulation fa 99.8 4.6E-15 1.6E-19 111.0 28.0 235 10-249 8-270 (308)
40 1b89_A Protein (clathrin heavy 99.8 3.5E-18 1.2E-22 130.5 10.7 207 8-249 30-236 (449)
41 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.6E-16 5.4E-21 116.7 18.5 220 23-248 18-243 (275)
42 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.6E-16 9E-21 115.5 19.1 225 9-243 42-269 (275)
43 3nf1_A KLC 1, kinesin light ch 99.7 1E-16 3.5E-21 119.7 13.9 239 9-248 26-306 (311)
44 4abn_A Tetratricopeptide repea 99.7 7.2E-16 2.5E-20 122.0 19.2 214 26-245 84-317 (474)
45 3vtx_A MAMA; tetratricopeptide 99.7 7.9E-15 2.7E-19 101.2 21.3 165 45-213 5-169 (184)
46 3vtx_A MAMA; tetratricopeptide 99.7 8.7E-15 3E-19 101.0 21.4 168 8-179 3-170 (184)
47 3uq3_A Heat shock protein STI1 99.7 3.6E-15 1.2E-19 108.3 20.0 195 8-214 36-236 (258)
48 1ouv_A Conserved hypothetical 99.7 1.4E-13 4.9E-18 101.0 27.2 193 43-250 4-216 (273)
49 1b89_A Protein (clathrin heavy 99.7 2E-17 6.7E-22 126.4 5.6 186 22-243 15-200 (449)
50 3u4t_A TPR repeat-containing p 99.7 5.3E-14 1.8E-18 103.1 22.9 213 9-226 36-261 (272)
51 4abn_A Tetratricopeptide repea 99.7 5.3E-15 1.8E-19 117.0 18.2 196 9-209 101-316 (474)
52 2ond_A Cleavage stimulation fa 99.7 1.5E-13 5.1E-18 102.7 25.0 202 9-214 49-270 (308)
53 4a1s_A PINS, partner of inscut 99.7 1.3E-14 4.5E-19 112.7 18.0 236 12-248 50-331 (411)
54 3as5_A MAMA; tetratricopeptide 99.6 1.7E-13 5.7E-18 94.3 21.3 164 81-248 9-172 (186)
55 2h6f_A Protein farnesyltransfe 99.6 3.7E-14 1.3E-18 108.7 19.2 197 45-246 97-302 (382)
56 2xm6_A Protein corresponding t 99.6 4.4E-12 1.5E-16 100.9 31.9 223 9-249 38-288 (490)
57 2xm6_A Protein corresponding t 99.6 3.8E-12 1.3E-16 101.2 31.5 224 9-250 74-326 (490)
58 4a1s_A PINS, partner of inscut 99.6 6.3E-15 2.2E-19 114.4 14.6 238 11-248 87-371 (411)
59 3ulq_A Response regulator aspa 99.6 5.3E-14 1.8E-18 108.4 19.4 230 16-248 109-367 (383)
60 3sf4_A G-protein-signaling mod 99.6 4.5E-14 1.5E-18 109.3 18.1 241 7-248 6-295 (406)
61 4gyw_A UDP-N-acetylglucosamine 99.6 6.3E-14 2.2E-18 115.5 19.3 164 45-212 9-172 (723)
62 3as5_A MAMA; tetratricopeptide 99.6 2.3E-13 7.8E-18 93.6 18.9 163 47-213 10-172 (186)
63 3sf4_A G-protein-signaling mod 99.6 4.1E-14 1.4E-18 109.5 16.3 238 11-248 48-335 (406)
64 4gyw_A UDP-N-acetylglucosamine 99.6 1.3E-13 4.5E-18 113.6 19.8 166 79-248 8-173 (723)
65 2ooe_A Cleavage stimulation fa 99.6 2E-12 6.9E-17 103.8 26.1 217 27-248 255-491 (530)
66 3ro2_A PINS homolog, G-protein 99.6 1.8E-13 6.2E-18 102.9 18.8 236 12-248 7-291 (338)
67 3ro2_A PINS homolog, G-protein 99.6 5.8E-14 2E-18 105.6 15.6 240 10-249 43-332 (338)
68 3edt_B KLC 2, kinesin light ch 99.6 6.7E-14 2.3E-18 102.8 15.1 228 21-249 12-281 (283)
69 3edt_B KLC 2, kinesin light ch 99.6 1.1E-13 3.9E-18 101.6 15.4 159 55-213 11-197 (283)
70 3q15_A PSP28, response regulat 99.6 9E-13 3.1E-17 101.4 20.9 228 17-248 108-364 (378)
71 4i17_A Hypothetical protein; T 99.6 1.8E-12 6.3E-17 92.5 21.0 195 8-214 5-209 (228)
72 4i17_A Hypothetical protein; T 99.6 3.6E-12 1.2E-16 90.9 21.6 155 43-201 5-169 (228)
73 4g1t_A Interferon-induced prot 99.5 6.4E-12 2.2E-16 99.3 24.2 171 8-180 49-277 (472)
74 4g1t_A Interferon-induced prot 99.5 4.8E-12 1.6E-16 100.0 21.6 122 132-254 317-465 (472)
75 2ooe_A Cleavage stimulation fa 99.5 1.8E-11 6E-16 98.4 24.6 202 9-214 271-492 (530)
76 1hz4_A MALT regulatory protein 99.5 3.5E-11 1.2E-15 92.2 24.2 234 15-248 19-281 (373)
77 1hz4_A MALT regulatory protein 99.5 1.8E-11 6.2E-16 93.8 21.9 237 12-248 55-321 (373)
78 1xi4_A Clathrin heavy chain; a 99.5 4.7E-11 1.6E-15 102.4 25.9 203 10-247 1105-1307(1630)
79 1qqe_A Vesicular transport pro 99.5 4.7E-12 1.6E-16 93.9 17.6 194 52-247 44-267 (292)
80 1qqe_A Vesicular transport pro 99.5 1.7E-11 5.7E-16 90.9 18.5 203 11-213 38-268 (292)
81 3qky_A Outer membrane assembly 99.4 1.6E-11 5.4E-16 89.5 18.0 185 10-214 15-224 (261)
82 3qky_A Outer membrane assembly 99.4 2.5E-11 8.7E-16 88.4 18.3 152 10-180 52-225 (261)
83 2fo7_A Synthetic consensus TPR 99.4 3.3E-11 1.1E-15 78.1 16.9 129 118-249 4-132 (136)
84 3urz_A Uncharacterized protein 99.4 3.7E-11 1.3E-15 84.5 18.2 133 86-224 60-194 (208)
85 3urz_A Uncharacterized protein 99.4 4.5E-11 1.6E-15 84.0 18.3 174 11-191 5-196 (208)
86 3mv2_B Coatomer subunit epsilo 99.4 1.1E-10 3.7E-15 85.8 20.7 178 64-248 85-281 (310)
87 2fo7_A Synthetic consensus TPR 99.4 3.2E-11 1.1E-15 78.2 16.3 56 16-72 7-62 (136)
88 3nf1_A KLC 1, kinesin light ch 99.4 1.7E-11 5.8E-16 91.3 16.7 172 42-213 24-223 (311)
89 3ulq_A Response regulator aspa 99.4 2.2E-11 7.4E-16 93.8 17.6 201 10-213 143-367 (383)
90 2pzi_A Probable serine/threoni 99.4 4.9E-12 1.7E-16 104.4 14.5 174 21-200 402-583 (681)
91 3dra_A Protein farnesyltransfe 99.4 5.4E-10 1.8E-14 82.7 23.8 223 21-248 44-286 (306)
92 3e4b_A ALGK; tetratricopeptide 99.4 9.6E-10 3.3E-14 86.5 25.8 188 47-250 178-388 (452)
93 3rjv_A Putative SEL1 repeat pr 99.4 2.6E-10 8.8E-15 80.4 20.2 175 28-214 4-197 (212)
94 3rjv_A Putative SEL1 repeat pr 99.4 2.9E-10 1E-14 80.1 20.0 177 63-251 4-199 (212)
95 3qou_A Protein YBBN; thioredox 99.4 8.6E-11 2.9E-15 86.9 17.7 165 79-247 116-282 (287)
96 2r5s_A Uncharacterized protein 99.4 6.1E-11 2.1E-15 81.1 15.4 162 83-248 9-172 (176)
97 2pzi_A Probable serine/threoni 99.4 1.3E-11 4.5E-16 101.9 13.8 173 56-235 402-583 (681)
98 3mv2_B Coatomer subunit epsilo 99.3 8.7E-11 3E-15 86.3 16.0 185 29-222 85-288 (310)
99 3q15_A PSP28, response regulat 99.3 2.7E-10 9.3E-15 87.5 19.7 200 10-213 141-364 (378)
100 2yhc_A BAMD, UPF0169 lipoprote 99.3 6.8E-10 2.3E-14 79.0 19.6 203 10-250 4-214 (225)
101 3qou_A Protein YBBN; thioredox 99.3 2E-10 6.9E-15 84.8 17.4 169 41-213 113-283 (287)
102 2vsy_A XCC0866; transferase, g 99.3 1.4E-10 4.8E-15 93.9 17.8 154 58-215 2-158 (568)
103 2vsy_A XCC0866; transferase, g 99.3 1E-10 3.5E-15 94.8 16.9 155 23-181 2-159 (568)
104 3e4b_A ALGK; tetratricopeptide 99.3 5.3E-10 1.8E-14 87.9 20.3 160 79-251 175-353 (452)
105 2r5s_A Uncharacterized protein 99.3 5E-11 1.7E-15 81.5 12.7 161 48-212 9-171 (176)
106 2yhc_A BAMD, UPF0169 lipoprote 99.3 9.1E-10 3.1E-14 78.3 19.6 167 11-214 42-213 (225)
107 1xi4_A Clathrin heavy chain; a 99.3 2E-09 6.8E-14 92.7 24.5 207 8-244 1132-1340(1630)
108 4ga2_A E3 SUMO-protein ligase 99.3 1.4E-11 4.6E-16 82.0 9.3 82 120-203 36-117 (150)
109 4ga2_A E3 SUMO-protein ligase 99.3 2.4E-11 8.3E-16 80.8 10.3 146 51-200 3-149 (150)
110 2ifu_A Gamma-SNAP; membrane fu 99.3 5.4E-10 1.9E-14 83.4 16.9 216 23-241 4-253 (307)
111 3q7a_A Farnesyltransferase alp 99.3 1.5E-08 5E-13 76.0 24.2 232 13-249 57-331 (349)
112 4e6h_A MRNA 3'-END-processing 99.2 7.1E-09 2.4E-13 84.9 23.4 237 11-250 303-571 (679)
113 1hh8_A P67PHOX, NCF-2, neutrop 99.2 7.1E-09 2.4E-13 72.8 19.3 126 48-179 9-150 (213)
114 1hh8_A P67PHOX, NCF-2, neutrop 99.2 3.8E-09 1.3E-13 74.2 17.1 129 12-146 8-152 (213)
115 3u3w_A Transcriptional activat 99.2 3.3E-08 1.1E-12 73.2 22.6 166 83-248 78-265 (293)
116 2ifu_A Gamma-SNAP; membrane fu 99.1 2.5E-09 8.6E-14 79.8 15.4 193 12-207 38-254 (307)
117 4e6h_A MRNA 3'-END-processing 99.1 1.4E-08 4.6E-13 83.3 20.3 216 9-229 342-583 (679)
118 2qfc_A PLCR protein; TPR, HTH, 99.1 4.2E-08 1.4E-12 72.6 20.8 168 80-247 75-264 (293)
119 4f3v_A ESX-1 secretion system 99.1 4.2E-08 1.4E-12 71.2 19.9 195 22-224 18-245 (282)
120 1a17_A Serine/threonine protei 99.1 6.9E-09 2.4E-13 69.7 15.1 91 86-178 19-109 (166)
121 2c2l_A CHIP, carboxy terminus 99.1 9.3E-10 3.2E-14 81.0 11.5 94 11-106 5-98 (281)
122 1a17_A Serine/threonine protei 99.1 1E-08 3.4E-13 68.9 15.8 131 115-248 13-145 (166)
123 3u3w_A Transcriptional activat 99.1 1.7E-08 5.7E-13 74.8 18.2 164 50-213 80-265 (293)
124 4gco_A Protein STI-1; structur 99.1 7E-09 2.4E-13 66.6 13.5 94 48-143 16-109 (126)
125 4gco_A Protein STI-1; structur 99.1 4.8E-09 1.7E-13 67.3 12.7 95 117-213 15-109 (126)
126 3gw4_A Uncharacterized protein 99.1 3.5E-09 1.2E-13 73.7 12.9 158 56-214 3-176 (203)
127 2qfc_A PLCR protein; TPR, HTH, 99.1 5.1E-08 1.8E-12 72.1 19.7 168 46-213 76-265 (293)
128 3dra_A Protein farnesyltransfe 99.1 1.2E-07 4E-12 70.2 21.3 201 10-214 67-287 (306)
129 2c2l_A CHIP, carboxy terminus 99.1 1.4E-09 4.6E-14 80.2 10.8 196 43-249 2-199 (281)
130 1na0_A Designed protein CTPR3; 99.1 1.4E-08 4.7E-13 64.5 14.0 96 11-108 10-105 (125)
131 1na0_A Designed protein CTPR3; 99.1 1.4E-08 4.9E-13 64.5 14.0 25 188-212 80-104 (125)
132 3gw4_A Uncharacterized protein 99.0 8.1E-09 2.8E-13 71.9 13.5 158 21-179 3-176 (203)
133 2lni_A Stress-induced-phosphop 99.0 2E-08 6.8E-13 64.7 14.5 118 114-234 15-132 (133)
134 4f3v_A ESX-1 secretion system 99.0 2.3E-08 7.9E-13 72.6 16.0 190 57-250 18-238 (282)
135 2lni_A Stress-induced-phosphop 99.0 1.2E-08 4.2E-13 65.7 13.4 97 81-179 17-113 (133)
136 2vyi_A SGTA protein; chaperone 99.0 1.1E-08 3.6E-13 65.7 12.7 115 118-235 15-129 (131)
137 2vyi_A SGTA protein; chaperone 99.0 1.7E-08 6E-13 64.6 13.6 121 78-201 10-130 (131)
138 3gyz_A Chaperone protein IPGC; 99.0 2.6E-09 8.8E-14 70.8 9.6 99 114-214 35-133 (151)
139 3gyz_A Chaperone protein IPGC; 99.0 1E-08 3.6E-13 67.9 12.5 100 79-180 35-134 (151)
140 1p5q_A FKBP52, FK506-binding p 99.0 1.7E-08 5.9E-13 76.2 14.8 124 44-169 146-283 (336)
141 2vgx_A Chaperone SYCD; alterna 99.0 8.4E-09 2.9E-13 68.2 11.5 96 116-213 22-117 (148)
142 2e2e_A Formate-dependent nitri 99.0 3.5E-09 1.2E-13 72.3 9.8 119 58-179 23-144 (177)
143 3dss_A Geranylgeranyl transfer 99.0 1.4E-06 4.7E-11 65.1 23.9 222 21-249 40-304 (331)
144 1p5q_A FKBP52, FK506-binding p 99.0 2.6E-08 8.8E-13 75.3 15.0 121 117-239 149-283 (336)
145 2e2e_A Formate-dependent nitri 99.0 7.1E-09 2.4E-13 70.7 10.7 125 20-147 20-147 (177)
146 2fbn_A 70 kDa peptidylprolyl i 99.0 2.9E-09 1E-13 74.1 8.3 132 117-250 40-187 (198)
147 2vgx_A Chaperone SYCD; alterna 99.0 7.8E-09 2.7E-13 68.4 9.9 110 137-249 9-118 (148)
148 2fbn_A 70 kDa peptidylprolyl i 98.9 2.5E-09 8.7E-14 74.4 7.1 88 116-205 89-176 (198)
149 1elw_A TPR1-domain of HOP; HOP 98.9 1.4E-07 4.9E-12 59.1 14.5 98 10-109 4-101 (118)
150 3upv_A Heat shock protein STI1 98.9 7.1E-08 2.4E-12 61.7 13.2 22 154-175 76-97 (126)
151 2xcb_A PCRH, regulatory protei 98.9 3.7E-08 1.3E-12 64.5 11.7 98 115-214 18-115 (142)
152 1elw_A TPR1-domain of HOP; HOP 98.9 1.9E-07 6.3E-12 58.6 14.5 99 45-145 4-102 (118)
153 3upv_A Heat shock protein STI1 98.9 1.2E-07 4E-12 60.7 13.5 98 115-214 4-101 (126)
154 2xcb_A PCRH, regulatory protei 98.9 5.3E-08 1.8E-12 63.8 11.3 110 137-249 6-115 (142)
155 4gcn_A Protein STI-1; structur 98.8 1.5E-07 5.2E-12 60.4 12.7 104 117-223 10-119 (127)
156 3sz7_A HSC70 cochaperone (SGT) 98.8 2.1E-07 7.2E-12 62.5 13.6 97 80-178 11-107 (164)
157 4b4t_Q 26S proteasome regulato 98.8 6.9E-07 2.3E-11 69.7 18.4 197 17-213 11-244 (434)
158 3q49_B STIP1 homology and U bo 98.8 4.3E-07 1.5E-11 58.8 14.5 98 114-213 8-105 (137)
159 4gcn_A Protein STI-1; structur 98.8 1.4E-07 4.9E-12 60.5 11.8 96 12-108 10-111 (127)
160 3q49_B STIP1 homology and U bo 98.8 1.6E-07 5.5E-12 60.8 12.3 98 9-108 8-105 (137)
161 2dba_A Smooth muscle cell asso 98.8 3.9E-07 1.3E-11 59.7 14.2 95 46-143 29-127 (148)
162 4b4t_Q 26S proteasome regulato 98.8 1.2E-06 4.2E-11 68.3 19.3 197 52-248 11-244 (434)
163 2kck_A TPR repeat; tetratricop 98.8 2E-07 6.7E-12 57.9 12.0 99 9-109 5-106 (112)
164 2kck_A TPR repeat; tetratricop 98.8 2.2E-07 7.5E-12 57.6 12.2 99 150-250 6-107 (112)
165 1elr_A TPR2A-domain of HOP; HO 98.8 1.6E-07 5.6E-12 60.0 11.7 108 11-121 5-118 (131)
166 2dba_A Smooth muscle cell asso 98.8 5.9E-07 2E-11 58.8 14.5 96 115-213 28-127 (148)
167 3q7a_A Farnesyltransferase alp 98.8 4.3E-06 1.5E-10 62.7 20.4 202 9-214 87-331 (349)
168 1elr_A TPR2A-domain of HOP; HO 98.8 1.7E-07 5.7E-12 60.0 11.4 107 117-226 6-118 (131)
169 3sz7_A HSC70 cochaperone (SGT) 98.8 2.5E-07 8.4E-12 62.2 12.5 100 44-145 10-109 (164)
170 1hxi_A PEX5, peroxisome target 98.7 2.3E-07 7.7E-12 59.0 10.6 96 12-109 19-114 (121)
171 3ro3_A PINS homolog, G-protein 98.7 1.7E-07 5.7E-12 62.3 10.4 132 117-248 11-157 (164)
172 2uy1_A Cleavage stimulation fa 98.7 1E-05 3.4E-10 64.3 22.0 207 27-248 196-412 (493)
173 1hxi_A PEX5, peroxisome target 98.7 3.1E-07 1.1E-11 58.3 10.9 90 122-213 24-113 (121)
174 1wao_1 Serine/threonine protei 98.7 2.7E-07 9.3E-12 73.0 12.1 123 14-139 10-134 (477)
175 3dss_A Geranylgeranyl transfer 98.7 1.4E-05 4.6E-10 59.7 20.2 200 45-249 26-267 (331)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 5.3E-07 1.8E-11 71.0 13.5 123 45-169 268-404 (457)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 6.9E-07 2.4E-11 70.4 13.9 121 81-204 269-404 (457)
178 1wao_1 Serine/threonine protei 98.6 1.6E-07 5.5E-12 74.3 9.5 115 127-244 18-134 (477)
179 2xev_A YBGF; tetratricopeptide 98.6 2.7E-06 9.2E-11 54.3 13.8 94 14-109 6-105 (129)
180 3ro3_A PINS homolog, G-protein 98.6 6.7E-07 2.3E-11 59.3 11.3 95 12-106 11-115 (164)
181 1ihg_A Cyclophilin 40; ppiase 98.6 1.2E-06 4E-11 67.1 13.6 139 46-206 224-362 (370)
182 1ihg_A Cyclophilin 40; ppiase 98.6 9.1E-07 3.1E-11 67.7 12.9 139 82-242 225-363 (370)
183 1dce_A Protein (RAB geranylger 98.6 1.6E-05 5.3E-10 64.3 20.3 170 26-200 45-241 (567)
184 2xev_A YBGF; tetratricopeptide 98.6 3.7E-06 1.3E-10 53.6 13.6 92 121-214 8-105 (129)
185 3rkv_A Putative peptidylprolyl 98.6 2.5E-06 8.5E-11 57.0 12.5 63 151-214 64-126 (162)
186 2if4_A ATFKBP42; FKBP-like, al 98.5 5E-07 1.7E-11 68.3 9.7 148 46-214 180-328 (338)
187 2if4_A ATFKBP42; FKBP-like, al 98.5 7.4E-07 2.5E-11 67.3 10.6 148 11-179 180-328 (338)
188 3k9i_A BH0479 protein; putativ 98.5 2.9E-07 9.9E-12 58.0 7.0 84 23-107 3-88 (117)
189 3rkv_A Putative peptidylprolyl 98.5 2.6E-06 8.9E-11 56.9 11.9 65 115-180 63-127 (162)
190 1dce_A Protein (RAB geranylger 98.5 1.3E-05 4.6E-10 64.7 17.4 173 59-236 43-242 (567)
191 1klx_A Cysteine rich protein B 98.5 1.9E-05 6.6E-10 51.2 15.1 110 95-215 10-127 (138)
192 3k9i_A BH0479 protein; putativ 98.5 6.1E-07 2.1E-11 56.5 7.6 59 82-141 29-87 (117)
193 3n71_A Histone lysine methyltr 98.4 3.1E-06 1.1E-10 66.9 11.8 62 117-178 395-463 (490)
194 3n71_A Histone lysine methyltr 98.4 3.6E-06 1.2E-10 66.5 12.1 125 124-248 318-463 (490)
195 1klx_A Cysteine rich protein B 98.4 9.5E-06 3.2E-10 52.7 12.1 110 60-180 10-127 (138)
196 2uy1_A Cleavage stimulation fa 98.4 0.00016 5.3E-09 57.5 20.1 188 9-213 212-412 (493)
197 2l6j_A TPR repeat-containing p 98.4 9.3E-07 3.2E-11 54.8 5.9 95 9-105 3-103 (111)
198 2hr2_A Hypothetical protein; a 98.3 2.5E-05 8.4E-10 51.5 12.3 93 120-213 16-130 (159)
199 2hr2_A Hypothetical protein; a 98.3 1.5E-05 5.1E-10 52.5 10.7 28 47-74 13-40 (159)
200 2l6j_A TPR repeat-containing p 98.3 1.2E-06 4E-11 54.3 5.1 93 149-244 3-102 (111)
201 2kat_A Uncharacterized protein 98.2 1.1E-05 3.9E-10 50.3 8.4 61 116-177 20-80 (115)
202 1na3_A Designed protein CTPR2; 98.2 3.8E-05 1.3E-09 45.4 10.4 63 11-74 10-72 (91)
203 2kat_A Uncharacterized protein 98.2 3.2E-05 1.1E-09 48.2 9.8 80 133-214 3-82 (115)
204 1na3_A Designed protein CTPR2; 98.1 4.3E-05 1.5E-09 45.1 9.9 26 187-212 45-70 (91)
205 1zu2_A Mitochondrial import re 98.1 2.1E-05 7E-10 51.8 8.3 96 129-228 16-132 (158)
206 1zu2_A Mitochondrial import re 98.1 1.7E-05 5.8E-10 52.2 7.1 97 21-121 13-130 (158)
207 3ma5_A Tetratricopeptide repea 97.9 6.8E-05 2.3E-09 45.5 8.0 62 150-212 7-68 (100)
208 3ma5_A Tetratricopeptide repea 97.9 0.00011 3.9E-09 44.5 8.6 64 9-73 6-69 (100)
209 3ly7_A Transcriptional activat 97.8 0.0015 5E-08 49.3 14.2 73 148-224 275-347 (372)
210 3qww_A SET and MYND domain-con 97.7 0.00029 1E-08 54.9 10.2 87 162-248 310-410 (433)
211 3qww_A SET and MYND domain-con 97.7 0.00014 4.7E-09 56.7 8.4 61 81-141 341-408 (433)
212 3mkq_A Coatomer beta'-subunit; 97.7 0.0079 2.7E-07 50.8 19.2 155 17-210 606-761 (814)
213 3qwp_A SET and MYND domain-con 97.7 0.00024 8.3E-09 55.3 9.2 85 57-141 299-397 (429)
214 2kc7_A BFR218_protein; tetratr 97.7 0.00046 1.6E-08 41.4 8.7 59 16-75 6-65 (99)
215 3qwp_A SET and MYND domain-con 97.7 0.00071 2.4E-08 52.7 11.4 92 157-248 294-399 (429)
216 3ly7_A Transcriptional activat 97.6 0.0029 9.8E-08 47.8 13.9 144 41-189 190-347 (372)
217 3mkq_A Coatomer beta'-subunit; 97.6 0.0041 1.4E-07 52.5 16.7 128 53-213 607-735 (814)
218 2kc7_A BFR218_protein; tetratr 97.5 0.00055 1.9E-08 41.0 7.3 53 125-178 10-63 (99)
219 1pc2_A Mitochondria fission pr 97.4 0.0042 1.4E-07 40.5 10.2 88 130-221 13-105 (152)
220 3mkq_B Coatomer subunit alpha; 97.4 0.014 4.8E-07 39.0 13.4 101 54-175 14-114 (177)
221 3bee_A Putative YFRE protein; 97.3 0.004 1.4E-07 37.0 9.3 65 9-74 5-72 (93)
222 1wy6_A Hypothetical protein ST 97.3 0.014 4.6E-07 37.0 13.9 65 186-251 92-156 (172)
223 1pc2_A Mitochondria fission pr 97.2 0.0088 3E-07 39.0 10.7 83 95-179 13-100 (152)
224 3bee_A Putative YFRE protein; 97.2 0.0036 1.2E-07 37.2 8.4 46 167-213 26-71 (93)
225 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0067 2.3E-07 36.8 9.6 23 49-71 9-31 (104)
226 2v5f_A Prolyl 4-hydroxylase su 97.1 0.011 3.6E-07 35.9 10.1 67 8-74 3-75 (104)
227 3mkq_B Coatomer subunit alpha; 96.9 0.042 1.4E-06 36.7 13.7 130 87-246 12-141 (177)
228 4h7y_A Dual specificity protei 96.9 0.03 1E-06 36.2 10.4 53 94-147 74-126 (161)
229 1nzn_A CGI-135 protein, fissio 96.9 0.017 5.8E-07 36.2 9.0 90 124-214 10-103 (126)
230 4gns_B Protein CSD3, chitin bi 96.8 0.032 1.1E-06 46.5 12.7 129 118-247 251-398 (754)
231 4h7y_A Dual specificity protei 96.7 0.023 7.8E-07 36.7 9.0 54 164-218 74-127 (161)
232 3u64_A Protein TP_0956; tetrat 96.6 0.017 5.9E-07 42.0 9.0 85 96-182 179-272 (301)
233 3u64_A Protein TP_0956; tetrat 96.3 0.19 6.3E-06 36.7 20.4 132 93-226 134-283 (301)
234 2ff4_A Probable regulatory pro 95.9 0.061 2.1E-06 41.3 9.2 72 47-119 173-249 (388)
235 1nzn_A CGI-135 protein, fissio 95.9 0.16 5.6E-06 31.8 10.9 80 167-248 18-102 (126)
236 4gns_B Protein CSD3, chitin bi 95.8 0.12 4E-06 43.2 11.0 125 15-142 253-398 (754)
237 4fhn_B Nucleoporin NUP120; pro 95.5 1.2 4E-05 39.6 16.5 145 51-203 818-989 (1139)
238 2ff4_A Probable regulatory pro 95.4 0.12 4.3E-06 39.6 9.3 70 154-224 175-249 (388)
239 1wy6_A Hypothetical protein ST 95.4 0.27 9.4E-06 31.3 14.9 140 21-182 18-157 (172)
240 1v54_E Cytochrome C oxidase po 95.1 0.26 9E-06 29.3 9.0 62 166-228 26-87 (109)
241 3o48_A Mitochondria fission 1 94.7 0.45 1.5E-05 30.1 9.7 69 146-214 36-107 (134)
242 4fhn_B Nucleoporin NUP120; pro 94.7 2.2 7.6E-05 37.9 16.7 147 86-239 818-990 (1139)
243 4ady_A RPN2, 26S proteasome re 94.4 1.4 4.8E-05 37.9 13.5 87 159-247 569-656 (963)
244 2y69_E Cytochrome C oxidase su 94.1 0.66 2.3E-05 29.4 9.1 60 168-228 71-130 (152)
245 1v54_E Cytochrome C oxidase po 93.7 0.63 2.2E-05 27.8 9.4 45 98-142 28-72 (109)
246 3ffl_A Anaphase-promoting comp 93.4 1.1 3.6E-05 29.6 10.3 129 4-145 12-152 (167)
247 1y8m_A FIS1; mitochondria, unk 93.0 1.1 3.8E-05 28.7 11.1 72 147-220 36-110 (144)
248 4b4t_R RPN7, 26S proteasome re 92.9 1.9 6.4E-05 33.6 11.2 61 12-72 133-195 (429)
249 1zbp_A Hypothetical protein VP 92.6 0.96 3.3E-05 32.5 8.3 114 124-248 6-128 (273)
250 3ffl_A Anaphase-promoting comp 92.5 0.61 2.1E-05 30.8 6.7 113 121-246 26-148 (167)
251 2y69_E Cytochrome C oxidase su 92.4 1.3 4.4E-05 28.1 9.4 59 98-157 71-129 (152)
252 4b4t_P 26S proteasome regulato 92.0 3.7 0.00013 32.2 19.8 189 24-214 30-247 (445)
253 4b4t_P 26S proteasome regulato 91.6 4.1 0.00014 31.9 21.4 188 59-248 30-246 (445)
254 4b4t_R RPN7, 26S proteasome re 90.9 3.6 0.00012 32.0 10.8 97 47-143 133-236 (429)
255 3txn_A 26S proteasome regulato 90.7 4.6 0.00016 31.0 16.0 129 13-142 22-166 (394)
256 3o48_A Mitochondria fission 1 90.7 2.1 7.2E-05 27.0 9.8 68 42-109 37-107 (134)
257 4ady_A RPN2, 26S proteasome re 90.5 8 0.00027 33.5 16.5 152 91-248 535-695 (963)
258 3esl_A Checkpoint serine/threo 90.5 3 0.0001 28.5 9.6 59 163-221 92-151 (202)
259 3lvg_A Clathrin heavy chain 1; 90.0 6.6E-05 2.3E-09 58.2 -15.8 117 10-141 54-170 (624)
260 2uwj_G Type III export protein 89.3 2.3 7.7E-05 25.3 7.8 15 25-39 21-35 (115)
261 1zbp_A Hypothetical protein VP 89.2 4.8 0.00016 29.0 11.8 120 17-143 4-128 (273)
262 2p58_C Putative type III secre 88.9 2.4 8.4E-05 25.2 9.1 50 55-110 50-99 (116)
263 2uwj_G Type III export protein 88.7 2.5 8.6E-05 25.1 7.8 80 128-215 19-98 (115)
264 2p58_C Putative type III secre 88.4 2.7 9.1E-05 25.1 8.8 80 128-215 20-99 (116)
265 1k1a_A B-cell lymphoma 3-encod 87.3 5.6 0.00019 27.5 8.9 24 17-40 13-36 (241)
266 1wdy_A 2-5A-dependent ribonucl 86.4 1.9 6.5E-05 30.8 6.2 218 14-256 6-249 (285)
267 3txn_A 26S proteasome regulato 86.4 9.6 0.00033 29.3 20.4 92 50-141 104-207 (394)
268 1qsa_A Protein (soluble lytic 86.3 13 0.00043 30.7 21.8 116 129-248 228-347 (618)
269 3kea_A K1L; tropism, ANK repea 85.1 4.8 0.00017 29.1 7.8 13 162-174 170-182 (285)
270 3lvg_A Clathrin heavy chain 1; 84.8 0.0063 2.2E-07 47.6 -7.8 216 9-240 82-324 (624)
271 1wdy_A 2-5A-dependent ribonucl 84.2 3.1 0.00011 29.7 6.4 225 15-257 41-283 (285)
272 3esl_A Checkpoint serine/threo 84.0 8.2 0.00028 26.4 9.7 54 61-114 95-149 (202)
273 4a1g_A Mitotic checkpoint seri 83.0 7.5 0.00026 25.2 9.4 53 169-221 84-137 (152)
274 2zu6_B Programmed cell death p 79.8 16 0.00055 27.0 12.8 25 13-37 6-30 (307)
275 3eiq_C Programmed cell death p 79.5 18 0.00062 27.4 13.5 66 187-253 219-286 (358)
276 2d2s_A Exocyst complex compone 77.5 16 0.00055 25.7 8.3 21 17-37 25-45 (235)
277 1mzb_A Ferric uptake regulatio 77.4 5 0.00017 25.4 4.8 61 35-96 8-69 (136)
278 3kea_A K1L; tropism, ANK repea 76.8 2.3 8E-05 30.8 3.6 189 52-256 35-224 (285)
279 3eiq_C Programmed cell death p 76.6 22 0.00076 26.9 14.4 95 152-247 219-319 (358)
280 4aez_C MAD3, mitotic spindle c 76.5 13 0.00044 25.9 6.9 55 167-221 131-186 (223)
281 1y8m_A FIS1; mitochondria, unk 76.4 13 0.00043 23.9 12.7 69 112-180 36-107 (144)
282 2wpv_A GET4, UPF0363 protein Y 76.1 21 0.00073 26.4 15.7 163 61-242 13-190 (312)
283 1k1a_A B-cell lymphoma 3-encod 75.6 14 0.00049 25.4 7.4 188 51-256 12-212 (241)
284 3eyy_A Putative iron uptake re 75.5 7.1 0.00024 25.0 5.2 61 34-96 8-68 (145)
285 4a1g_A Mitotic checkpoint seri 74.6 15 0.00051 23.9 9.0 54 62-115 82-136 (152)
286 3jxi_A Vanilloid receptor-rela 74.5 2.7 9.1E-05 29.8 3.3 56 16-71 8-72 (260)
287 4aez_C MAD3, mitotic spindle c 74.4 14 0.00048 25.7 6.6 84 29-115 96-185 (223)
288 3hra_A Ankyrin repeat family p 73.3 9.4 0.00032 25.5 5.8 178 53-238 10-193 (201)
289 2wpv_A GET4, UPF0363 protein Y 72.6 27 0.00091 25.9 21.3 83 55-138 63-157 (312)
290 3eyy_A Putative iron uptake re 72.1 16 0.00056 23.3 6.6 57 71-129 10-66 (145)
291 3twr_A Tankyrase-2; ankyrin re 72.0 16 0.00054 23.4 6.5 18 87-104 12-29 (165)
292 1ug3_A EIF4GI, eukaryotic prot 71.5 29 0.001 26.0 9.2 65 13-78 14-79 (339)
293 2wvi_A Mitotic checkpoint seri 71.4 19 0.00065 23.7 9.7 55 169-223 79-134 (164)
294 3t8k_A Uncharacterized protein 70.5 21 0.00071 23.8 7.4 133 121-254 41-185 (186)
295 2ion_A PDCD4, programmed cell 70.2 19 0.00066 23.3 9.3 24 84-107 13-36 (152)
296 2d2s_A Exocyst complex compone 70.2 26 0.00088 24.7 9.7 90 121-213 24-119 (235)
297 2xig_A Ferric uptake regulatio 69.9 19 0.00066 23.2 7.5 62 34-96 16-77 (150)
298 2wvi_A Mitotic checkpoint seri 69.8 21 0.00071 23.5 9.7 53 63-115 78-131 (164)
299 1ug3_A EIF4GI, eukaryotic prot 69.6 29 0.00099 26.0 8.0 64 83-147 14-78 (339)
300 3lpz_A GET4 (YOR164C homolog); 69.3 33 0.0011 25.7 19.6 44 148-195 134-177 (336)
301 4gq2_M Nucleoporin NUP120; bet 68.7 60 0.0021 28.4 12.4 108 121-234 816-950 (950)
302 2xig_A Ferric uptake regulatio 68.7 20 0.0007 23.0 7.0 40 195-234 36-75 (150)
303 3bge_A Predicted ATPase; struc 68.7 25 0.00085 24.0 8.3 39 56-94 18-56 (201)
304 4ets_A Ferric uptake regulatio 67.6 19 0.00064 23.6 5.9 69 27-96 14-85 (162)
305 3hra_A Ankyrin repeat family p 66.9 9.8 0.00033 25.4 4.7 161 17-184 9-172 (201)
306 2fe3_A Peroxide operon regulat 66.8 22 0.00075 22.7 8.2 62 34-96 11-72 (145)
307 2r9g_A AAA ATPase, central reg 66.4 28 0.00096 23.8 9.3 55 56-111 25-84 (204)
308 2w57_A Ferric uptake regulatio 66.2 23 0.0008 22.7 6.8 62 34-96 6-68 (150)
309 2ijq_A Hypothetical protein; s 66.1 25 0.00086 23.1 7.6 48 24-71 46-101 (161)
310 1mzb_A Ferric uptake regulatio 66.0 22 0.00075 22.4 7.0 59 71-130 9-68 (136)
311 2nsz_A Programmed cell death p 64.7 23 0.00079 22.1 10.4 22 120-141 12-33 (129)
312 2fe3_A Peroxide operon regulat 64.7 25 0.00084 22.5 6.6 58 176-234 13-70 (145)
313 2keb_A DNA polymerase subunit 64.3 20 0.00067 21.2 5.9 56 169-226 28-88 (101)
314 2o03_A Probable zinc uptake re 63.4 24 0.00083 22.0 5.7 41 54-94 19-59 (131)
315 3mwm_A ZUR, putative metal upt 63.0 21 0.00071 22.6 5.4 46 50-95 18-63 (139)
316 3pvs_A Replication-associated 62.0 56 0.0019 25.6 10.5 55 92-146 267-326 (447)
317 2w57_A Ferric uptake regulatio 61.9 22 0.00077 22.8 5.4 58 142-200 9-67 (150)
318 4b4t_S RPN3, 26S proteasome re 61.8 61 0.0021 26.1 11.7 66 9-74 230-299 (523)
319 3ctd_A Putative ATPase, AAA fa 61.7 36 0.0012 23.4 8.4 64 48-111 35-106 (213)
320 3l6a_A Eukaryotic translation 61.5 31 0.0011 26.2 6.8 63 81-147 13-80 (364)
321 2fu4_A Ferric uptake regulatio 61.4 19 0.00065 20.1 6.2 59 176-235 8-67 (83)
322 3jxi_A Vanilloid receptor-rela 60.5 3.1 0.00011 29.4 1.3 56 51-106 8-72 (260)
323 4ets_A Ferric uptake regulatio 60.1 28 0.00094 22.8 5.7 59 142-201 25-85 (162)
324 3mwm_A ZUR, putative metal upt 59.4 19 0.00063 22.9 4.6 47 154-200 17-63 (139)
325 2r9g_A AAA ATPase, central reg 59.2 40 0.0014 23.1 10.7 33 163-196 27-59 (204)
326 2b7e_A PRE-mRNA processing pro 58.7 8.3 0.00028 20.3 2.3 29 27-55 3-31 (59)
327 2o03_A Probable zinc uptake re 58.3 27 0.00091 21.8 5.2 46 16-61 16-61 (131)
328 3aji_A 26S proteasome non-ATPa 57.9 41 0.0014 22.8 8.5 20 16-35 9-28 (231)
329 3bge_A Predicted ATPase; struc 57.9 42 0.0014 22.9 9.7 21 128-148 20-40 (201)
330 2pnn_A Transient receptor pote 57.8 17 0.0006 25.7 4.9 57 15-71 15-80 (273)
331 3eu9_A Huntingtin-interacting 57.5 9.8 0.00033 26.1 3.4 211 17-249 13-236 (240)
332 2ion_A PDCD4, programmed cell 57.0 37 0.0013 22.0 10.0 66 117-183 11-78 (152)
333 2etb_A Transient receptor pote 57.0 46 0.0016 23.2 6.9 56 16-72 5-70 (256)
334 1bpo_A Protein (clathrin); cla 56.8 72 0.0025 25.3 9.3 100 37-138 353-452 (494)
335 3ljn_A Hypothetical protein; a 56.6 36 0.0012 25.3 6.7 219 9-245 17-266 (364)
336 2dzn_A Probable 26S proteasome 56.4 23 0.00077 24.1 5.1 16 18-33 7-22 (228)
337 3eu9_A Huntingtin-interacting 55.6 29 0.00098 23.7 5.6 180 54-255 15-205 (240)
338 3b7b_A Euchromatic histone-lys 53.8 36 0.0012 23.3 5.9 212 16-249 14-236 (237)
339 3ctd_A Putative ATPase, AAA fa 53.7 52 0.0018 22.7 10.0 22 128-149 48-69 (213)
340 2fu4_A Ferric uptake regulatio 52.6 28 0.00096 19.3 6.6 59 35-94 7-66 (83)
341 2nsz_A Programmed cell death p 52.5 40 0.0014 21.0 11.0 72 152-224 9-82 (129)
342 3f3f_C Nucleoporin NUP85; stru 52.0 62 0.0021 26.3 7.2 54 184-239 515-568 (570)
343 3pvs_A Replication-associated 51.1 87 0.003 24.5 13.8 56 162-217 267-327 (447)
344 3ygs_P Procaspase 9; apoptosis 51.0 35 0.0012 20.0 5.6 34 130-167 52-85 (97)
345 2f6m_A Suppressor protein STP2 50.4 28 0.00097 18.7 4.0 44 13-57 5-48 (65)
346 4b4t_S RPN3, 26S proteasome re 49.8 1E+02 0.0034 24.9 12.1 67 79-145 230-300 (523)
347 3qil_A Clathrin heavy chain 1; 49.5 15 0.0005 22.8 2.7 52 153-207 35-86 (125)
348 4fke_A Aminopeptidase N; zinc 47.6 1.4E+02 0.0049 26.0 16.9 160 49-213 690-859 (909)
349 1wty_A Hypothetical protein TT 47.5 46 0.0016 20.3 6.8 77 130-213 3-80 (119)
350 3c1d_A Protein ORAA, regulator 46.6 57 0.002 21.2 10.8 46 134-181 49-94 (159)
351 3kae_A CDC27, possible protein 44.8 68 0.0023 21.5 7.2 71 54-143 71-142 (242)
352 2ijq_A Hypothetical protein; s 44.7 64 0.0022 21.2 8.6 52 162-213 44-103 (161)
353 1bpo_A Protein (clathrin); cla 44.0 1.2E+02 0.0041 24.1 12.8 140 94-246 343-482 (494)
354 2rg8_A Programmed cell death p 43.1 69 0.0023 21.0 6.1 24 49-72 14-37 (165)
355 1n11_A Ankyrin; clathrin, BAND 42.6 63 0.0022 24.8 6.2 50 15-68 16-67 (437)
356 3t8k_A Uncharacterized protein 41.8 74 0.0025 21.0 7.8 129 124-257 12-151 (186)
357 1oai_A Nuclear RNA export fact 41.1 29 0.001 18.2 2.8 21 233-253 33-53 (59)
358 2keb_A DNA polymerase subunit 41.0 55 0.0019 19.4 7.1 33 28-60 27-59 (101)
359 1qsa_A Protein (soluble lytic 40.0 1.6E+02 0.0054 24.4 24.9 115 25-143 229-347 (618)
360 4fke_A Aminopeptidase N; zinc 39.7 1.9E+02 0.0066 25.2 17.8 156 14-177 690-858 (909)
361 1wgl_A TOLL-interacting protei 39.3 28 0.00095 18.3 2.5 24 232-255 35-58 (59)
362 3f3f_C Nucleoporin NUP85; stru 39.2 1.6E+02 0.0054 24.1 8.0 54 149-204 515-568 (570)
363 3lxu_X Tripeptidyl-peptidase 2 38.4 1.6E+02 0.0053 27.2 8.2 78 61-141 1265-1342(1354)
364 2qq8_A TBC1 domain family memb 38.0 68 0.0023 23.9 5.4 76 66-143 214-294 (334)
365 1bd8_A P19INK4D CDK4/6 inhibit 37.8 32 0.0011 21.6 3.3 12 57-68 11-22 (156)
366 3t5v_B Nuclear mRNA export pro 37.5 1.1E+02 0.0038 24.1 6.6 61 13-73 179-248 (455)
367 3qil_A Clathrin heavy chain 1; 37.5 44 0.0015 20.7 3.4 48 121-171 38-85 (125)
368 2pnn_A Transient receptor pote 36.9 20 0.00069 25.4 2.4 89 51-140 16-123 (273)
369 3e3v_A Regulatory protein RECX 36.7 92 0.0032 20.7 9.1 29 98-126 51-79 (177)
370 3d5l_A Regulatory protein RECX 36.5 1.1E+02 0.0036 21.3 7.7 104 107-219 40-144 (221)
371 3lpz_A GET4 (YOR164C homolog); 36.2 1.4E+02 0.0046 22.5 25.3 83 55-138 65-159 (336)
372 3kae_A CDC27, possible protein 35.6 1E+02 0.0034 20.8 9.6 198 20-250 12-238 (242)
373 2p22_A Suppressor protein STP2 35.4 65 0.0022 21.4 4.3 50 43-93 109-158 (174)
374 3rjo_A Endoplasmic reticulum a 34.5 1.6E+02 0.0054 22.7 15.9 146 44-198 196-353 (419)
375 1q2z_A ATP-dependent DNA helic 34.5 59 0.002 20.0 3.8 50 200-252 42-95 (120)
376 2qx5_A Nucleoporin NIC96; mRNA 33.4 2.1E+02 0.0073 23.9 12.2 46 10-57 153-198 (661)
377 3d9h_A CDNA FLJ77766, highly s 33.4 1.3E+02 0.0044 21.4 8.3 221 12-256 14-251 (285)
378 2qfz_A TBC1 domain family memb 33.3 1.5E+02 0.0051 22.1 7.5 76 172-247 231-313 (345)
379 2cos_A Serine/threonine protei 33.2 53 0.0018 16.9 3.2 11 236-246 38-48 (54)
380 2qq8_A TBC1 domain family memb 32.2 49 0.0017 24.7 3.8 42 174-215 217-258 (334)
381 2rfa_A Transient receptor pote 32.2 1.2E+02 0.004 20.5 7.5 25 228-252 159-183 (232)
382 2ko4_A Mediator of RNA polymer 32.1 71 0.0024 18.0 3.8 30 5-34 31-60 (81)
383 3t5v_B Nuclear mRNA export pro 31.7 1.6E+02 0.0053 23.3 6.6 60 188-247 179-247 (455)
384 3bqo_A Telomeric repeat-bindin 31.1 63 0.0022 22.1 3.7 21 157-177 124-144 (211)
385 3bqo_A Telomeric repeat-bindin 30.7 1.3E+02 0.0045 20.6 9.9 49 96-144 94-146 (211)
386 4gq2_M Nucleoporin NUP120; bet 30.6 2.8E+02 0.0095 24.4 13.3 88 86-179 816-926 (950)
387 2dzn_A Probable 26S proteasome 30.5 48 0.0016 22.4 3.4 53 52-105 6-58 (228)
388 3v30_A DNA-binding protein rfx 30.3 1.1E+02 0.0036 19.5 5.1 149 87-248 6-160 (172)
389 2p22_A Suppressor protein STP2 30.1 1.1E+02 0.0038 20.3 4.7 48 150-198 111-158 (174)
390 3ltj_A Alpharep-4; protein eng 29.7 1.2E+02 0.0042 20.0 19.3 171 43-233 26-196 (201)
391 1ixm_A SPO0B, protein (sporula 29.6 1.2E+02 0.004 20.5 5.0 72 165-247 14-85 (192)
392 1jog_A Hypothetical protein HI 29.1 1.1E+02 0.0039 19.5 6.4 80 167-248 55-141 (146)
393 3mv2_A Coatomer subunit alpha; 29.1 1.8E+02 0.0062 21.7 11.1 162 51-215 34-237 (325)
394 2jp7_A MRNA export factor MEX6 28.8 21 0.00071 18.7 0.9 21 24-45 33-53 (57)
395 2xai_A ASB-9, ankyrin repeat a 28.4 1.5E+02 0.0052 20.6 9.3 15 17-31 7-21 (261)
396 2lti_A Astexin1; sidechain-TO- 27.8 25 0.00087 14.1 0.9 8 3-10 3-10 (26)
397 2zu6_B Programmed cell death p 27.8 1.8E+02 0.0063 21.4 14.4 68 153-221 169-238 (307)
398 3rjo_A Endoplasmic reticulum a 26.7 2.2E+02 0.0075 21.9 17.7 144 79-232 196-352 (419)
399 3qye_A TBC1 domain family memb 26.3 2E+02 0.0067 21.3 10.5 132 25-165 164-309 (331)
400 3ltm_A Alpha-REP4; protein eng 26.2 1.5E+02 0.005 19.7 19.0 185 27-234 18-202 (211)
401 2yru_A Steroid receptor RNA ac 25.9 1.2E+02 0.0041 18.6 8.4 43 172-214 48-90 (118)
402 2crb_A Nuclear receptor bindin 25.6 1.1E+02 0.0036 17.9 4.4 23 187-209 17-39 (97)
403 3d5l_A Regulatory protein RECX 25.3 1.7E+02 0.0059 20.2 10.7 15 98-112 94-108 (221)
404 2rg8_A Programmed cell death p 24.9 1.5E+02 0.0051 19.4 8.1 26 83-108 13-38 (165)
405 3c1d_A Protein ORAA, regulator 24.3 1.5E+02 0.0051 19.2 11.8 13 29-41 49-61 (159)
406 3lxu_X Tripeptidyl-peptidase 2 24.3 4.3E+02 0.015 24.5 10.1 79 166-247 1265-1343(1354)
407 2rpa_A Katanin P60 ATPase-cont 23.2 1E+02 0.0034 17.3 3.1 23 190-212 17-39 (78)
408 4b4t_O 26S proteasome regulato 23.2 2.5E+02 0.0087 21.4 9.9 88 156-243 82-192 (393)
409 2cwy_A Hypothetical protein TT 22.5 1.2E+02 0.0042 17.6 6.4 51 161-213 12-67 (94)
410 3ibx_A TENA, HP1287, putative 22.5 1.9E+02 0.0066 19.8 5.7 12 186-197 160-171 (221)
411 1fkm_A Protein (GYP1P), ORF YO 22.3 1.6E+02 0.0055 22.6 5.2 42 67-108 218-259 (396)
412 1n11_A Ankyrin; clathrin, BAND 22.1 2.6E+02 0.009 21.2 7.7 82 16-105 50-135 (437)
413 3f6q_A Integrin-linked protein 21.8 1.6E+02 0.0056 18.8 6.3 147 89-255 11-166 (179)
414 1uzc_A Hypothetical protein FL 21.7 79 0.0027 17.3 2.5 32 26-57 14-45 (71)
415 2f8y_A Notch homolog 1, transl 21.6 1.9E+02 0.0063 19.3 7.0 183 50-255 27-219 (223)
416 2qfz_A TBC1 domain family memb 21.5 2.5E+02 0.0087 20.8 9.7 80 66-145 230-316 (345)
417 4g8k_A 2-5A-dependent ribonucl 20.9 1.5E+02 0.0052 21.5 4.8 40 174-220 290-329 (337)
418 2dod_A Transcription elongatio 20.5 97 0.0033 17.6 2.7 33 26-59 16-49 (82)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.8e-38 Score=247.76 Aligned_cols=206 Identities=16% Similarity=0.133 Sum_probs=163.0
Q ss_pred hHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc---------HH
Q 041259 28 DSKLLLSEMKENGLTANT-VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGL---------VR 97 (257)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~ 97 (257)
.+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|++||..+|+.+|.+|.+.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345555666666554433 35777888888888888888888888888888888888888888876543 67
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHH
Q 041259 98 EAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMT 177 (257)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (257)
.|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 041259 178 EVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYER 233 (257)
Q Consensus 178 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (257)
+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888887653
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.4e-38 Score=247.52 Aligned_cols=197 Identities=15% Similarity=0.212 Sum_probs=182.6
Q ss_pred CCCCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC---------hHHHHHHHHHH
Q 041259 2 KGKNIKADL-PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGE---------PSEALSLLDEM 71 (257)
Q Consensus 2 ~~~g~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~ 71 (257)
+++++.+.. ..++.+|.+|++.|++++|.++|++|.+.|++||..+|+.||.+|++.+. ++.|.++|++|
T Consensus 17 ~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M 96 (501)
T 4g26_A 17 KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM 96 (501)
T ss_dssp -------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH
T ss_pred HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH
Confidence 455665543 46889999999999999999999999999999999999999999988765 68899999999
Q ss_pred HhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHH
Q 041259 72 LDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTT 151 (257)
Q Consensus 72 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (257)
...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 97 ~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 041259 152 AYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRC 198 (257)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 198 (257)
||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998763
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=5.4e-26 Score=184.86 Aligned_cols=237 Identities=12% Similarity=0.044 Sum_probs=122.6
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHH-----
Q 041259 7 KADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVV----- 81 (257)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----- 81 (257)
.++..+|+.++..+.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 379 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAV 379 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 3677778888888888888888888888777654 2344444444444444444444444444444321 22344
Q ss_pred -----------------------------HHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHH
Q 041259 82 -----------------------------TFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIE 132 (257)
Q Consensus 82 -----------------------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (257)
+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|+++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHH
Confidence 44445555555555555555554444332 234444444555555555555
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHc----CCCcc--HHHHHHHHHHHHhcCcHHHHHH
Q 041259 133 RARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEV----GVDLD--LNAYTSLVWGLSRCGHLQEARV 206 (257)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~ 206 (257)
+|.++|+.+.+.... +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+
T Consensus 459 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 459 LANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 555555554443322 4444555555555555555555555554443 33343 4455555555555555555555
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 207 LFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
+++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+
T Consensus 538 ~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 538 ALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 555554432 22444555555555555555555555555443
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.6e-25 Score=182.18 Aligned_cols=219 Identities=13% Similarity=0.026 Sum_probs=192.2
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHH
Q 041259 7 KADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVL 86 (257)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (257)
+.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.++.+.|++++|+++|+++.+.+ +.+..+|..+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 447 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFL 447 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 3467889999999999999999999999998864 5568899999999999999999999999998874 4478999999
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhC----CCCCC--HHHHHHHHHHH
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKR----DMIPD--TTAYTALIDGY 160 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~ 160 (257)
+.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 999999999999999999998764 567899999999999999999999999999775 55677 78999999999
Q ss_pred HcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041259 161 LKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKH 230 (257)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (257)
.+.|++++|.+.++++.+.+ +.+..+|..+..+|...|++++|.+.++++.+.. +.+...+..+..+|
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 99999999999999999876 3488999999999999999999999999999852 22455565555443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=4.8e-21 Score=147.96 Aligned_cols=227 Identities=15% Similarity=0.084 Sum_probs=148.7
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcH
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLV 96 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (257)
...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 333333444444444444444332 2233444444444444444444544444444432 11334444455555555555
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHH
Q 041259 97 REAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRM 176 (257)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (257)
++|...+++..... +.+..++..+...+...|++++|...|+++.+.++. +..+|..+..++...|++++|...++++
T Consensus 220 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 297 (388)
T 1w3b_A 220 DRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp THHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555544432 234667777888888888888888888888776544 5677888888888888888888888888
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 177 TEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 177 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..+..++.+.|++++|.+.++++.+.
T Consensus 298 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 298 LRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8764 347788888888888888898998888888775 2345677888888888889999999988888763
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=4.2e-21 Score=148.27 Aligned_cols=235 Identities=16% Similarity=0.064 Sum_probs=142.5
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
+...|..+...+.+.|++++|.+.|+++.+.. |.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+..
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 143 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGN 143 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 55567777777777777777777777776653 3345566667777777777777777776666543 223445555666
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC---------------------
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMI--------------------- 147 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------- 147 (257)
.+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.++.
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666666665442 234555666666666666666666666555443222
Q ss_pred -----------C-CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC
Q 041259 148 -----------P-DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRG 215 (257)
Q Consensus 148 -----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 215 (257)
| +..++..+..++...|++++|...++++.+.... +..++..+...+.+.|++++|...++++.+.
T Consensus 223 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 300 (388)
T 1w3b_A 223 VAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL- 300 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 1 3455555666666666666666666666654322 4555666666666666666666666666654
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 216 ILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.+.+..++..+...+.+.|++++|.+.++++.+
T Consensus 301 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 233555666666666666666666666666654
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.6e-20 Score=147.62 Aligned_cols=235 Identities=12% Similarity=0.059 Sum_probs=200.9
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHH
Q 041259 8 ADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLI 87 (257)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (257)
.+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..++...|++++|+..|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 356678899999999999999999999998864 5678899999999999999999999999999875 33678899999
Q ss_pred HHHHhcCcHHHHHHHHHhcccCCCCCCH---HHHHHH------------HHHHHhcCcHHHHHHHHHHhhhCCCCCCHHH
Q 041259 88 DGLCKSGLVREAIDYFGRMPDFGLHPNV---AVYTAL------------IDGLCKKNCIERARNLFDEMPKRDMIPDTTA 152 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (257)
.+|...|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|...|+.+.+..+. +..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHH
Confidence 99999999999999999998764 2333 455555 44588999999999999999887544 7889
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc-HHHHHHH-----
Q 041259 153 YTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD-EILCISL----- 226 (257)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l----- 226 (257)
+..+..+|...|++++|...++++.+... .+..++..+...+...|++++|...++++... .|+ ...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHH
Confidence 99999999999999999999999988643 37889999999999999999999999999875 343 3444444
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHhC
Q 041259 227 -------LKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 227 -------~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
...+...|++++|.+.++++.+.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78899999999999999999873
No 8
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=1.6e-20 Score=143.83 Aligned_cols=235 Identities=13% Similarity=0.031 Sum_probs=196.8
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
+...|..+...+.+.|++++|.+.|+.+.+.. +.+..+|..+..++...|++++|+..|++..+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568889999999999999999999999875 5678899999999999999999999999999874 346889999999
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCC-----------HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC-CCHHHHHHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPN-----------VAVYTALIDGLCKKNCIERARNLFDEMPKRDMI-PDTTAYTAL 156 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 156 (257)
+|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.+..+. ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999987643 32 223344578899999999999999999887543 267899999
Q ss_pred HHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCH
Q 041259 157 IDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNM 236 (257)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (257)
...+...|++++|...++++.+... .+..++..+..++...|++++|...++++.+.. +.+...+..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999998753 378899999999999999999999999998862 33578899999999999999
Q ss_pred HHHHHHHHHHHhC
Q 041259 237 DEAIELQNEMMGR 249 (257)
Q Consensus 237 ~~a~~~~~~m~~~ 249 (257)
++|.+.+++..+.
T Consensus 298 ~~A~~~~~~al~~ 310 (365)
T 4eqf_A 298 REAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998763
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=5.8e-20 Score=144.47 Aligned_cols=236 Identities=12% Similarity=0.020 Sum_probs=126.5
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC------------
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRI------------ 76 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------ 76 (257)
+...|..+..++...|++++|...|+.+.+.+ +.+..++..+..++.+.|++++|...|+++.+...
T Consensus 59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 137 (450)
T 2y4t_A 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQL 137 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 45556666666666666666666666666553 33455566666666666666666666666655421
Q ss_pred ------------------------------------cccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHH
Q 041259 77 ------------------------------------EVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTA 120 (257)
Q Consensus 77 ------------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (257)
+.+..++..+..+|...|++++|..+|+++.+.. +.+..++..
T Consensus 138 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 216 (450)
T 2y4t_A 138 IKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYK 216 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 1123334444444444444444444444443322 233445555
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHH------------HHHHHcccCHHHHHHHHHHHHHcCCC-cc--H
Q 041259 121 LIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTAL------------IDGYLKHESFKEALNLKNRMTEVGVD-LD--L 185 (257)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~ 185 (257)
+...+...|++++|...|+.+....+. +...+..+ ...+...|++++|...|+.+.+.... |. .
T Consensus 217 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 295 (450)
T 2y4t_A 217 ISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTV 295 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHH
Confidence 555555555555555555555543222 33333333 45555556666666666555553221 00 2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 186 NAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
..+..+..++.+.|++++|...++++.+.. +.+...|..+..+|...|++++|.+.++++.+
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345555666666666666666666665531 22455666666666666666666666666654
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.4e-19 Score=136.36 Aligned_cols=240 Identities=11% Similarity=0.015 Sum_probs=188.7
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHH
Q 041259 5 NIKADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFC 84 (257)
Q Consensus 5 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (257)
+.+.+...+..+...+...|++++|.++|+.+.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 345667778888888888899999999999988764 4556667777788888899999999999888763 33677888
Q ss_pred HHHHHHHhcC-cHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc
Q 041259 85 VLIDGLCKSG-LVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKH 163 (257)
Q Consensus 85 ~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (257)
.+...+...| ++++|...|++..... +.+...+..+...+...|++++|...++.+.+.... +...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 8888888888 8899999998887664 445677888888888899999999999888776544 556677788888888
Q ss_pred cCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC--------CCCcHHHHHHHHHHHHhcCC
Q 041259 164 ESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRG--------ILPDEILCISLLKKHYERGN 235 (257)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~ 235 (257)
|++++|...++++.+... .+..++..+...+...|++++|...+++..+.. .+.....+..+..++...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 999999999888887653 367788888888888899999988888887631 12335677888888888888
Q ss_pred HHHHHHHHHHHHhC
Q 041259 236 MDEAIELQNEMMGR 249 (257)
Q Consensus 236 ~~~a~~~~~~m~~~ 249 (257)
+++|.+.+++..+.
T Consensus 252 ~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 252 YAEALDYHRQALVL 265 (330)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888887764
No 11
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=5.1e-22 Score=163.18 Aligned_cols=151 Identities=11% Similarity=0.076 Sum_probs=125.7
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHH---cCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKE---NGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCV 85 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (257)
-..+||++|.+|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcH-HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCC------HHHHHHHHH
Q 041259 86 LIDGLCKSGLV-REAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPD------TTAYTALID 158 (257)
Q Consensus 86 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 158 (257)
+|.++++.|+. ++|.++|++|.+.|+.||..+|++++....+. .+++.++++ ..+..|+ ..+...|..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999984 78999999999999999999999998766654 344444444 3333333 344455566
Q ss_pred HHHccc
Q 041259 159 GYLKHE 164 (257)
Q Consensus 159 ~~~~~~ 164 (257)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.7e-19 Score=134.86 Aligned_cols=236 Identities=12% Similarity=-0.031 Sum_probs=204.0
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCcccHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAG-EPSEALSLLDEMLDSRIEVTVVTFCVLI 87 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (257)
+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...| ++++|...+++..+.. +.+...|..+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 132 (330)
T 3hym_B 55 HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYG 132 (330)
T ss_dssp CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHH
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 45567778888999999999999999999874 557888999999999999 9999999999999864 33678899999
Q ss_pred HHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHH
Q 041259 88 DGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFK 167 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (257)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+.... +...+..+...+...|+++
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~ 210 (330)
T 3hym_B 133 HSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWK 210 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHH
Confidence 99999999999999999998764 345667777999999999999999999999887654 7889999999999999999
Q ss_pred HHHHHHHHHHHcC--------CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 041259 168 EALNLKNRMTEVG--------VDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEA 239 (257)
Q Consensus 168 ~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 239 (257)
+|...++++.+.. .+....++..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|
T Consensus 211 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHH
Confidence 9999999987642 13345788999999999999999999999998763 33677888999999999999999
Q ss_pred HHHHHHHHhC
Q 041259 240 IELQNEMMGR 249 (257)
Q Consensus 240 ~~~~~~m~~~ 249 (257)
.+.+++..+.
T Consensus 290 ~~~~~~al~~ 299 (330)
T 3hym_B 290 VDYFHTALGL 299 (330)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHHHHcc
Confidence 9999988754
No 13
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=3.6e-19 Score=136.30 Aligned_cols=236 Identities=14% Similarity=0.067 Sum_probs=199.6
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
+...+..+...+.+.|++++|...|+.+.+.. +.+..++..+..++...|++++|+..++++.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 35668889999999999999999999999875 5678899999999999999999999999998874 447889999999
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHH---------------HHHHHHhcCcHHHHHHHHHHhhhCCCCC-CHHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTA---------------LIDGLCKKNCIERARNLFDEMPKRDMIP-DTTA 152 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 152 (257)
.+...|++++|...++++.... +.+...+.. .+..+...|++++|...++.+.+..+.. +..+
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 9999999999999999987654 222222211 2334448999999999999998765432 5788
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 041259 153 YTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYE 232 (257)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (257)
+..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+..++.+
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 99999999999999999999999988753 367899999999999999999999999998752 3457788999999999
Q ss_pred cCCHHHHHHHHHHHHhC
Q 041259 233 RGNMDEAIELQNEMMGR 249 (257)
Q Consensus 233 ~g~~~~a~~~~~~m~~~ 249 (257)
.|++++|.+.+++..+.
T Consensus 298 ~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 298 LGAHREAVEHFLEALNM 314 (368)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998763
No 14
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=160.38 Aligned_cols=118 Identities=15% Similarity=0.207 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhh---hCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 041259 115 VAVYTALIDGLCKKNCIERARNLFDEMP---KRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSL 191 (257)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (257)
..+|+++|++|++.|++++|..+|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4577777777777777777777776654 3467777777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCcH-HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh
Q 041259 192 VWGLSRCGHL-QEARVLFHEMIGRGILPDEILCISLLKKHYE 232 (257)
Q Consensus 192 i~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (257)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 7777777763 6677777777777777777777777654444
No 15
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=6.1e-19 Score=132.76 Aligned_cols=235 Identities=10% Similarity=-0.049 Sum_probs=197.5
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
+...+..+...+...|++++|..+|+.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 44567778889999999999999999998874 5578889999999999999999999999998874 446788999999
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHH--------------HH-HHHhcCcHHHHHHHHHHhhhCCCCCCHHHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTAL--------------ID-GLCKKNCIERARNLFDEMPKRDMIPDTTAY 153 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (257)
.+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.... +...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 9999999999999999987653 2222223222 22 377889999999999999887554 78899
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 041259 154 TALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYER 233 (257)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (257)
..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999988753 367889999999999999999999999998753 34577888999999999
Q ss_pred CCHHHHHHHHHHHHhC
Q 041259 234 GNMDEAIELQNEMMGR 249 (257)
Q Consensus 234 g~~~~a~~~~~~m~~~ 249 (257)
|++++|.+.+++..+.
T Consensus 254 g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYM 269 (327)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999999998764
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=3.7e-18 Score=129.98 Aligned_cols=236 Identities=11% Similarity=0.046 Sum_probs=198.7
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
|+..+..+...+...|++++|...|+.+.+.. +.+..++..+..++...|++++|+..++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678888999999999999999999998874 5678899999999999999999999999998864 336788999999
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCC---CCHHHHHHH------------HHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLH---PNVAVYTAL------------IDGLCKKNCIERARNLFDEMPKRDMIPDTTAY 153 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (257)
.+...|++++|...++++.+.. + .+...+..+ ...+...|++++|...++.+.+..+. +...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHH
Confidence 9999999999999999998764 2 244444444 57888999999999999999887654 78889
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHH---------
Q 041259 154 TALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCI--------- 224 (257)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------- 224 (257)
..+...+...|++++|...++.+.+... .+..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHH
Confidence 9999999999999999999999998753 478899999999999999999999999998752 22333332
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 225 ---SLLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 225 ---~l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
.+...+.+.|++++|.+.+++..+..
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 264 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTE 264 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23667889999999999999988743
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=2.6e-19 Score=137.11 Aligned_cols=233 Identities=11% Similarity=-0.018 Sum_probs=192.1
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHH-----
Q 041259 8 ADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVT----- 82 (257)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----- 82 (257)
.+...|..+...+...|++++|.+.|+++.+.. +.+..++..+..++...|++++|+..++++.+... .+...
T Consensus 97 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~ 174 (365)
T 4eqf_A 97 GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKK 174 (365)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHCC-----
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCc-cchHHHhhhc
Confidence 367789999999999999999999999999874 56688999999999999999999999999987531 12222
Q ss_pred -----HHHHHHHHHhcCcHHHHHHHHHhcccCCCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHH
Q 041259 83 -----FCVLIDGLCKSGLVREAIDYFGRMPDFGLHP--NVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTA 155 (257)
Q Consensus 83 -----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (257)
+..+...+...|++++|...++++.+.. +. +..++..+...+...|++++|...++++.+..+. +..+|..
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 252 (365)
T 4eqf_A 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNR 252 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 3345788999999999999999998764 22 6889999999999999999999999999887554 7889999
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC---C--------CcHHHHH
Q 041259 156 LIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGI---L--------PDEILCI 224 (257)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~--------~~~~~~~ 224 (257)
+..++...|++++|...++++.+... .+..++..+..++...|++++|...++++.+... . .+...|.
T Consensus 253 l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 331 (365)
T 4eqf_A 253 LGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWA 331 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHH
Confidence 99999999999999999999998753 3688999999999999999999999999886411 1 1367889
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 041259 225 SLLKKHYERGNMDEAIELQNE 245 (257)
Q Consensus 225 ~l~~~~~~~g~~~~a~~~~~~ 245 (257)
.+..++...|+.+.+.++..+
T Consensus 332 ~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 332 ALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999998887664
No 18
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=3.9e-19 Score=133.80 Aligned_cols=234 Identities=11% Similarity=-0.043 Sum_probs=195.7
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHH--
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVL-- 86 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 86 (257)
+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.+++..+.... +...+..+
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 131 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQ 131 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhH
Confidence 66778889999999999999999999998874 567888999999999999999999999999876322 33333333
Q ss_pred ------------HH-HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHH
Q 041259 87 ------------ID-GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAY 153 (257)
Q Consensus 87 ------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (257)
.. .+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.... +..++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 209 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLW 209 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHH
Confidence 22 3778899999999999998764 457888999999999999999999999999887544 68889
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-----------cHHH
Q 041259 154 TALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILP-----------DEIL 222 (257)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~ 222 (257)
..+...+...|++++|...++++.+... .+..++..+..++...|++++|...++++.+..... +...
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 9999999999999999999999988753 367889999999999999999999999998752111 4678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 223 CISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 223 ~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
+..+..++...|++++|..++++..
T Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 289 WDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8899999999999999999887543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=6.3e-19 Score=134.97 Aligned_cols=233 Identities=13% Similarity=0.001 Sum_probs=195.6
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHH--
Q 041259 8 ADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCV-- 85 (257)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 85 (257)
.+...|..+...+...|++++|.+.|+.+.+.. +.+..++..+..++...|++++|+..++++...... +...+..
T Consensus 96 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 173 (368)
T 1fch_A 96 KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAE 173 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 366788899999999999999999999999875 567889999999999999999999999999886432 2222221
Q ss_pred -------------HHHHHHhcCcHHHHHHHHHhcccCCCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCH
Q 041259 86 -------------LIDGLCKSGLVREAIDYFGRMPDFGLHP--NVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDT 150 (257)
Q Consensus 86 -------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (257)
.+..+...|++++|...++++.+.. +. +..++..+...+...|++++|...++++....+. +.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~ 251 (368)
T 1fch_A 174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DY 251 (368)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CH
Confidence 2334448899999999999998764 22 5788999999999999999999999999887543 67
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC----------CcH
Q 041259 151 TAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGIL----------PDE 220 (257)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~ 220 (257)
.++..+...+...|++++|...++++.+... .+..++..+..++...|++++|...++++.+.... ...
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 8999999999999999999999999988753 36789999999999999999999999998864211 115
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 041259 221 ILCISLLKKHYERGNMDEAIELQNE 245 (257)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (257)
..|..+..++...|++++|..++.+
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHH
Confidence 7899999999999999999998764
No 20
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.3e-18 Score=126.49 Aligned_cols=226 Identities=14% Similarity=0.103 Sum_probs=194.9
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCc--cc----HHHH
Q 041259 10 LPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIE--VT----VVTF 83 (257)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 83 (257)
...|..+...+...|++++|...|+.+.+.. .+...+..+..++...|++++|+..+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4578888999999999999999999999886 78889999999999999999999999998865211 11 5788
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc
Q 041259 84 CVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKH 163 (257)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (257)
..+...+...|++++|...|++..+. .|+. ..+...|++++|...++.+....+. +...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 99999999999999999999999875 3553 3466778899999999998886543 567888899999999
Q ss_pred cCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 041259 164 ESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQ 243 (257)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (257)
|++++|...++++.+.... +..++..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999987543 78899999999999999999999999998863 345778889999999999999999999
Q ss_pred HHHHhC
Q 041259 244 NEMMGR 249 (257)
Q Consensus 244 ~~m~~~ 249 (257)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 21
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.84 E-value=1.1e-18 Score=124.05 Aligned_cols=209 Identities=11% Similarity=-0.005 Sum_probs=102.5
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHH
Q 041259 8 ADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLI 87 (257)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (257)
++...+..+...+.+.|++++|...|+...+.. |.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 444555555555556666666666666555543 3445555555555666666666666666555542 22344555555
Q ss_pred HHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHH
Q 041259 88 DGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFK 167 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (257)
.++...+.. . .. .....|++++|...+++..+..+. +...+..+..++...|+++
T Consensus 81 ~~~~~~~~~------------~---~~---------~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 81 EAYVALYRQ------------A---ED---------RERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHHT------------C---SS---------HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhh------------h---hh---------hcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChH
Confidence 555544000 0 00 000115566666666655554333 4555555555666666666
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041259 168 EALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEM 246 (257)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 246 (257)
+|...|++..+.. .+...+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++.
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666655554 355555566666666666666666666655531 223445555555566666666666655543
No 22
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=3.2e-17 Score=124.77 Aligned_cols=236 Identities=12% Similarity=0.001 Sum_probs=120.1
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCc--ccHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIE--VTVVTFCVL 86 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 86 (257)
+...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...+++..+.... .+...+..+
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 114 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH
Confidence 34455555566666666666666666665542 334455555666666666666666666666554210 122333222
Q ss_pred ------------HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHH
Q 041259 87 ------------IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYT 154 (257)
Q Consensus 87 ------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (257)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+..+. +..++.
T Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 192 (359)
T 3ieg_A 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFY 192 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 344455555555555555554332 233444444555555555555555555554444322 344444
Q ss_pred HHHHHHHc----------------------------------------------ccCHHHHHHHHHHHHHcCCCccH---
Q 041259 155 ALIDGYLK----------------------------------------------HESFKEALNLKNRMTEVGVDLDL--- 185 (257)
Q Consensus 155 ~l~~~~~~----------------------------------------------~~~~~~a~~~~~~~~~~~~~~~~--- 185 (257)
.+...+.. .|++++|...++++.+.... +.
T Consensus 193 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 271 (359)
T 3ieg_A 193 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYT 271 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHH
Confidence 44444444 45555555555444443221 11
Q ss_pred -HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 186 -NAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 186 -~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
..+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.
T Consensus 272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 272 VRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 123334555556666666666666665531 224555556666666666666666666665543
No 23
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.84 E-value=1.7e-18 Score=123.05 Aligned_cols=164 Identities=11% Similarity=-0.063 Sum_probs=110.0
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCc
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKA-----------GEPSEALSLLDEMLDSRIE 77 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 77 (257)
+...+..+...+.+.|++++|...+++..+.. |.+...+..+..++... |++++|+..+++..+.. +
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P 115 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-P 115 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-c
Confidence 66788889999999999999999999999875 55778888999998888 77777777777776653 2
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 041259 78 VTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALI 157 (257)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (257)
-+...+..+..++...|++++|+..|++..+.. .+...+..+..++...|++++|...|+...+..+. +...+..+.
T Consensus 116 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la 192 (217)
T 2pl2_A 116 RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYA 192 (217)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 245666667777777777777777777766654 55666666777777777777777777776665443 556666666
Q ss_pred HHHHcccCHHHHHHHHHHHH
Q 041259 158 DGYLKHESFKEALNLKNRMT 177 (257)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~ 177 (257)
.++...|++++|...+++..
T Consensus 193 ~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 193 SALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHTC---------------
T ss_pred HHHHHccCHHHHHHHHHHHh
Confidence 66677777777766666543
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=1.4e-17 Score=123.45 Aligned_cols=224 Identities=12% Similarity=0.066 Sum_probs=184.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcc-cHHHHHHHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEV-TVVTFCVLIDGL 90 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~ 90 (257)
....+.+++...|+++.|+..++. . -+|+..++..+...+...++.++|++.++++...+..| +...+..+...+
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~ 111 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY 111 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 445678899999999999987654 2 36788889999999999999999999999998776444 566677788999
Q ss_pred HhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHH---HHHHHHHHcccCHH
Q 041259 91 CKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAY---TALIDGYLKHESFK 167 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~ 167 (257)
...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++.+.+.. |+.... ...+..+...|+++
T Consensus 112 ~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp HHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHH
T ss_pred HHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHH
Confidence 999999999999988 4678889999999999999999999999998875 343211 22334445668999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHH
Q 041259 168 EALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDE-AIELQNEM 246 (257)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m 246 (257)
+|..+|+++.+.. +.+...++.+..++...|++++|...+++..+.. +-+..++..++..+...|+.++ +.++++++
T Consensus 184 eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 184 DAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999874 4588999999999999999999999999998763 3467788889999999999976 57888887
Q ss_pred HhC
Q 041259 247 MGR 249 (257)
Q Consensus 247 ~~~ 249 (257)
.+.
T Consensus 262 ~~~ 264 (291)
T 3mkr_A 262 KDA 264 (291)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 25
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.83 E-value=1.6e-16 Score=116.87 Aligned_cols=224 Identities=16% Similarity=0.105 Sum_probs=197.4
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCcccHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFK----AGEPSEALSLLDEMLDSRIEVTVVTFC 84 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (257)
+...+..+...+...|++++|.+.|++..+. .+...+..+...+.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667888889999999999999999999984 456778889999999 999999999999999875 678888
Q ss_pred HHHHHHHh----cCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 041259 85 VLIDGLCK----SGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK----KNCIERARNLFDEMPKRDMIPDTTAYTAL 156 (257)
Q Consensus 85 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (257)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999998864 67788889999999 999999999999998875 56778888
Q ss_pred HHHHHc----ccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041259 157 IDGYLK----HESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSR----CGHLQEARVLFHEMIGRGILPDEILCISLLK 228 (257)
Q Consensus 157 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (257)
...|.. .+++++|...+++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887 899999999999998875 56778888899999 999999999999999874 3667777888
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCC
Q 041259 229 KHYE----RGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 229 ~~~~----~g~~~~a~~~~~~m~~~~ 250 (257)
.|.. .+++++|.+.+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9998 999999999999988765
No 26
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.82 E-value=1.9e-17 Score=121.51 Aligned_cols=238 Identities=10% Similarity=0.006 Sum_probs=192.7
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCccc--HHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVT--VVTFCVL 86 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 86 (257)
|...+......+...|++++|...|+.+.+.. +.+...+..+..++...|++++|+..+++..+....++ ..+|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34456667888899999999999999999874 44566888999999999999999999999988432222 3448899
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCH
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESF 166 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (257)
...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+..+. +...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764 456678999999999999999999999999887544 677788887344445699
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhCC-CCCc------HHHHHHHHHHHHhcCCH
Q 041259 167 KEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGH---LQEARVLFHEMIGRG-ILPD------EILCISLLKKHYERGNM 236 (257)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~ 236 (257)
++|...++++.+.... +...+..+..++...|+ +++|...+++..+.. -.|+ ...|..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999987533 57788888888888888 888999998887641 1233 25777888999999999
Q ss_pred HHHHHHHHHHHhCC
Q 041259 237 DEAIELQNEMMGRG 250 (257)
Q Consensus 237 ~~a~~~~~~m~~~~ 250 (257)
++|.+.+++..+..
T Consensus 238 ~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 238 VKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998743
No 27
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.82 E-value=8.3e-18 Score=134.20 Aligned_cols=236 Identities=10% Similarity=-0.090 Sum_probs=140.9
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcc---------
Q 041259 8 ADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEV--------- 78 (257)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------- 78 (257)
||...|..+..++.+.|++++|.+.++.+.+.+ |.+..++..+..++...|++++|...|+++...+...
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 778888888888888899999999888888764 5566788888888888888888888888876543210
Q ss_pred ---------------------------------------------------------------------cHHHHHHHHHH
Q 041259 79 ---------------------------------------------------------------------TVVTFCVLIDG 89 (257)
Q Consensus 79 ---------------------------------------------------------------------~~~~~~~ll~~ 89 (257)
+...+......
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 02222222222
Q ss_pred HHh---cCcHHHHHHHHHhccc-----CCC--------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHH
Q 041259 90 LCK---SGLVREAIDYFGRMPD-----FGL--------HPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAY 153 (257)
Q Consensus 90 ~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (257)
+.. .|++++|..+|+++.+ ... +.+..++..+...+...|++++|...++.+.+.+.. ...+
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~ 273 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSY 273 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHH
Confidence 332 5677777777766655 210 122445566666677777777777777766654332 5555
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 041259 154 TALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYER 233 (257)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (257)
..+..++...|++++|...++.+.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHc
Confidence 5555555566666666555555554432 134445555555555555555555555555432 11333444444455555
Q ss_pred CCHHHHHHHHHHHHh
Q 041259 234 GNMDEAIELQNEMMG 248 (257)
Q Consensus 234 g~~~~a~~~~~~m~~ 248 (257)
|++++|.+.++++.+
T Consensus 352 ~~~~~A~~~~~~~~~ 366 (514)
T 2gw1_A 352 NKFDDCETLFSEAKR 366 (514)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555554443
No 28
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.6e-18 Score=135.20 Aligned_cols=236 Identities=13% Similarity=0.030 Sum_probs=203.5
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
+...+..+...+...|++++|...++.+.+.. |+...+..+..++...|++++|...+++..+.. +.+..++..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHH
Confidence 45678888899999999999999999999875 338889999999999999999999999998864 346788999999
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKE 168 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (257)
.+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+.... +..++..+...+...|++++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998764 446778889999999999999999999999876544 67789999999999999999
Q ss_pred HHHHHHHHHHcCCC-cc----HHHHHHHHHHHHh---cCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 041259 169 ALNLKNRMTEVGVD-LD----LNAYTSLVWGLSR---CGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAI 240 (257)
Q Consensus 169 a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 240 (257)
|...++.+.+.... ++ ..++..+...+.. .|++++|...++++.... +.+...+..+..++.+.|++++|.
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHH
Confidence 99999998775322 11 3388899999999 999999999999998753 345778888999999999999999
Q ss_pred HHHHHHHhCC
Q 041259 241 ELQNEMMGRG 250 (257)
Q Consensus 241 ~~~~~m~~~~ 250 (257)
+.+++..+.+
T Consensus 470 ~~~~~a~~~~ 479 (514)
T 2gw1_A 470 TLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999988743
No 29
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.82 E-value=7.6e-17 Score=116.99 Aligned_cols=199 Identities=12% Similarity=0.012 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 041259 46 VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGL 125 (257)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (257)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 334444444444455555555554444432 2233444444444444555555555554444332 22344444444445
Q ss_pred HhcCcHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHH
Q 041259 126 CKKNCIERARNLFDEMPKRDMIP-DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEA 204 (257)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 204 (257)
...|++++|...++++...+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555444411112 233444444444555555555555554444322 1344444445555555555555
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 205 RVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
...++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555544431 22333444444444555555555555554443
No 30
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=1.4e-16 Score=113.40 Aligned_cols=203 Identities=9% Similarity=-0.042 Sum_probs=156.4
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
+...|..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|...+++..+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45667778888888888888888888887764 4567788888888888888888888888887763 336677788888
Q ss_pred HHHhc-CcHHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCH
Q 041259 89 GLCKS-GLVREAIDYFGRMPDFGLHP-NVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESF 166 (257)
Q Consensus 89 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (257)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++.+.+.... +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 88888 88888888888887632223 3567777888888888888888888887776443 577788888888888888
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 167 KEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
++|...++.+.+.....+...+..+...+...|+.+.+..+++.+...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888888888877643236667777777778888888888888887653
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=2.7e-17 Score=121.88 Aligned_cols=218 Identities=13% Similarity=0.083 Sum_probs=177.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGLTANT--VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSG 94 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (257)
|+.....|+++.|+..++..... .|+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 45566789999999988776543 3443 4556778999999999999987654 2 4667888999999999999
Q ss_pred cHHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHH
Q 041259 95 LVREAIDYFGRMPDFGLHP-NVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLK 173 (257)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (257)
+.++|++.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999988765434 566677778999999999999999988 347889999999999999999999999
Q ss_pred HHHHHcCCCccHH---HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 174 NRMTEVGVDLDLN---AYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 174 ~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
+.+.+.. |+.. ....++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.+++.++.
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999875 3322 1123344555679999999999999987 4567888999999999999999999999998864
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=1.2e-16 Score=115.87 Aligned_cols=207 Identities=13% Similarity=0.023 Sum_probs=179.0
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 041259 10 LPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDG 89 (257)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (257)
...|..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5678888899999999999999999998874 5578889999999999999999999999998864 3367889999999
Q ss_pred HHhcCcHHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHH
Q 041259 90 LCKSGLVREAIDYFGRMPDFGLHP-NVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKE 168 (257)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (257)
+...|++++|.++++++...+..| +...+..+...+...|++++|...+++..+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998733334 5667888899999999999999999999887544 68889999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHH
Q 041259 169 ALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEIL 222 (257)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (257)
|...++.+.+... .+...+..+...+...|++++|.+.++++.+. .|+...
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 244 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLE 244 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHH
Confidence 9999999988643 46788889999999999999999999999875 344433
No 33
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.80 E-value=3.7e-17 Score=125.24 Aligned_cols=233 Identities=10% Similarity=0.006 Sum_probs=198.9
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 10 LPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGE-PSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
...|+.+...+.+.|++++|++.++.+.+.. +-+...|..+..++...|+ +++|+..|++.++... -+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 4568888889999999999999999999875 5578899999999999997 9999999999998753 37889999999
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc-ccCHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLK-HESFK 167 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 167 (257)
++...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++.+.++. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998875 567889999999999999999999999999998766 88899999999988 66657
Q ss_pred HH-----HHHHHHHHHcCCCccHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC------
Q 041259 168 EA-----LNLKNRMTEVGVDLDLNAYTSLVWGLSRCG--HLQEARVLFHEMIGRGILPDEILCISLLKKHYERG------ 234 (257)
Q Consensus 168 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 234 (257)
+| +..+++..+.... +...|..+...+...| ++++|.+.+.++ +. .+.+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 76 5888888887544 6788999999999888 689999999888 33 3446678888999998874
Q ss_pred ---CHHHHHHHHHHH-HhC
Q 041259 235 ---NMDEAIELQNEM-MGR 249 (257)
Q Consensus 235 ---~~~~a~~~~~~m-~~~ 249 (257)
..++|.++++++ .+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 258999999998 543
No 34
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.79 E-value=1.7e-17 Score=119.64 Aligned_cols=201 Identities=14% Similarity=0.061 Sum_probs=130.1
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|+..+++..+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44556666777777788888888888777653 4466777777777778888888888887777653 235667777777
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKE 168 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (257)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 7777788888888777776553 345666777777777778888888777777665433 56677777777777777777
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 169 ALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
|...++.+.+... .+..++..+..++...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777776543 25667777777777777777777777777764
No 35
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.79 E-value=1.4e-16 Score=127.96 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=78.5
Q ss_pred HHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHH
Q 041259 88 DGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFK 167 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (257)
..+...|++++|...+++..+. .|+...+..+...+...|++++|...++.+.+.... +..++..+...+...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHH
Confidence 3344444445555554444433 233444444444555555555555555554444322 4445555555555555555
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 168 EALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
+|...++++.+.... +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.
T Consensus 328 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 555555555544322 33455555555555555555555555555431 2234455555555555566666655555554
Q ss_pred h
Q 041259 248 G 248 (257)
Q Consensus 248 ~ 248 (257)
+
T Consensus 406 ~ 406 (537)
T 3fp2_A 406 R 406 (537)
T ss_dssp H
T ss_pred H
Confidence 3
No 36
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.79 E-value=1.8e-16 Score=127.31 Aligned_cols=233 Identities=15% Similarity=0.056 Sum_probs=197.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLC 91 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (257)
++..+...+...|++++|.+.++.+.+.. |+...+..+...+...|++++|+..+++..+.. +.+..++..+...+.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 56777788889999999999999999864 668889999999999999999999999998864 346788999999999
Q ss_pred hcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHH
Q 041259 92 KSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALN 171 (257)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (257)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|..
T Consensus 322 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999998764 445678889999999999999999999999887544 67789999999999999999999
Q ss_pred HHHHHHHcCCC-----ccHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCH
Q 041259 172 LKNRMTEVGVD-----LDLNAYTSLVWGLSRC----------GHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNM 236 (257)
Q Consensus 172 ~~~~~~~~~~~-----~~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (257)
.++++.+.... .....+......+... |++++|...+++..+.. +.+...+..+..++...|++
T Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH
Confidence 99998764311 1122344455667777 99999999999998863 34577889999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 041259 237 DEAIELQNEMMGRG 250 (257)
Q Consensus 237 ~~a~~~~~~m~~~~ 250 (257)
++|.+.|++..+..
T Consensus 479 ~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 479 DEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988643
No 37
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.78 E-value=3.1e-16 Score=111.59 Aligned_cols=205 Identities=16% Similarity=0.083 Sum_probs=175.0
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHH
Q 041259 42 TANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTAL 121 (257)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (257)
+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 4456788889999999999999999999998864 3467889999999999999999999999988764 4577888999
Q ss_pred HHHHHhc-CcHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 041259 122 IDGLCKK-NCIERARNLFDEMPKRDMIP-DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCG 199 (257)
Q Consensus 122 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 199 (257)
...+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+.... +...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcC
Confidence 9999999 99999999999998832233 3677888999999999999999999999887533 6788999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 200 HLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999987532146677777888889999999999999998754
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.78 E-value=5.3e-17 Score=117.05 Aligned_cols=202 Identities=14% Similarity=0.149 Sum_probs=159.6
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHH
Q 041259 43 ANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALI 122 (257)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (257)
.....|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 445667788888999999999999999998864 4467889999999999999999999999988764 45778889999
Q ss_pred HHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHH
Q 041259 123 DGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQ 202 (257)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (257)
..+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999887544 778899999999999999999999999988753 36788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 203 EARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
+|...++++.+.. +.+...+..+..++...|++++|.+.++++.+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999998763 345778899999999999999999999998874
No 39
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=4.6e-15 Score=110.98 Aligned_cols=235 Identities=10% Similarity=0.058 Sum_probs=187.4
Q ss_pred hhhHHHHHHHHHhc----CCh----hhHHHHHHHHHHcCCCccHHHHHHHHHHHH-------hcCCh-------HHHHHH
Q 041259 10 LPLYGTIIWGLCIE----SKF----EDSKLLLSEMKENGLTANTVICTTLMDAYF-------KAGEP-------SEALSL 67 (257)
Q Consensus 10 ~~~~~~li~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~ 67 (257)
...|...+....+. ++. ++|..+|+++.... +.+...|..++..+. +.|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 44577777765443 233 67889999998863 567888888887775 35886 899999
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCC-HH-HHHHHHHHHHhcCcHHHHHHHHHHhhhCC
Q 041259 68 LDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPN-VA-VYTALIDGLCKKNCIERARNLFDEMPKRD 145 (257)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (257)
|++..+.-.+-+...|..++..+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.+
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999998312335678999999999999999999999999875 343 33 89999999999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHH-cccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCC--cHH
Q 041259 146 MIPDTTAYTALIDGYL-KHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRG-ILP--DEI 221 (257)
Q Consensus 146 ~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~ 221 (257)
.. +...|........ ..|++++|..+|+...+... -+...|..++..+.+.|++++|..+|++..... +.| ...
T Consensus 165 p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 RT-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp TC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred CC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 43 4555554444322 37999999999999988643 377889999999999999999999999999863 455 356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 222 LCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
.|..++....+.|+.+.|..+++++.+.
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888899999999999999999998864
No 40
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=3.5e-18 Score=130.48 Aligned_cols=207 Identities=12% Similarity=0.144 Sum_probs=93.3
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHH
Q 041259 8 ADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLI 87 (257)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (257)
++..+|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.+++...+. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 34569999999999999999999999652 57778999999999999999999988877764 44578889999
Q ss_pred HHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHH
Q 041259 88 DGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFK 167 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (257)
.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.|+++
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence 99999999999887774 367779999999999999999999999977 37899999999999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 168 EALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
+|.+.++++ .++.+|..++.+|...|+++.|......+. ..| .....++..|.+.|.+++|.++++..+
T Consensus 166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a--d~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH--HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH--hhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999987 278999999999999999999966554322 233 335568899999999999999999876
Q ss_pred hC
Q 041259 248 GR 249 (257)
Q Consensus 248 ~~ 249 (257)
..
T Consensus 235 ~l 236 (449)
T 1b89_A 235 GL 236 (449)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=1.6e-16 Score=116.68 Aligned_cols=220 Identities=12% Similarity=-0.060 Sum_probs=102.8
Q ss_pred cCChhhHHHHHHHHHHcCC---CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHH
Q 041259 23 ESKFEDSKLLLSEMKENGL---TANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREA 99 (257)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (257)
.|++++|.+.++.+.+... +.+..++..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3455555555555554321 1123445555555555555555555555555442 22345555555555555555555
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHc
Q 041259 100 IDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEV 179 (257)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (257)
...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. |+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 55555554432 2234455555555555555555555555554432 22222222223334445555555555444443
Q ss_pred CCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 180 GVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGIL--P-DEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 180 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.. ++...+ .++..+...++.++|...+.+....... | +...+..+...+...|++++|.+.+++..+
T Consensus 174 ~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 174 SD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp SC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 21 122222 2344444445555555555544432110 0 124444455555555555555555555544
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=2.6e-16 Score=115.50 Aligned_cols=225 Identities=12% Similarity=-0.048 Sum_probs=178.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
+...|..+...+...|++++|...|+.+.+.. +.+..++..+..++...|++++|+..+++..+.. +.+..++..+..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~ 119 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHH
Confidence 46678889999999999999999999999875 5578899999999999999999999999999864 336788999999
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKE 168 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (257)
++...|++++|...++++.+.. |+.......+..+...|++++|...++........ +...+. ++..+...++.++
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGWN-IVEFYLGNISEQT 195 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHHH-HHHHHTTSSCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHHH-HHHHHHHhcCHHH
Confidence 9999999999999999998753 55444455556667789999999999887765432 444444 6777888889999
Q ss_pred HHHHHHHHHHcCCCc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 041259 169 ALNLKNRMTEVGVDL---DLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQ 243 (257)
Q Consensus 169 a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (257)
|...++...+..... +..++..+..++...|++++|...+++.... .|+. +.....++...|++++|++.+
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 999999887643211 2578889999999999999999999999986 3432 233455777889999988776
No 43
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1e-16 Score=119.68 Aligned_cols=239 Identities=15% Similarity=0.074 Sum_probs=170.8
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHc-------CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------C
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKEN-------GLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS------R 75 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 75 (257)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999998873 23445667888999999999999999999988754 2
Q ss_pred -CcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccC------CC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhC---
Q 041259 76 -IEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDF------GL-HPNVAVYTALIDGLCKKNCIERARNLFDEMPKR--- 144 (257)
Q Consensus 76 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 144 (257)
.+....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|...++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2334677888999999999999999999988653 21 223457788889999999999999999987654
Q ss_pred ---CCCC-CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcC-------CCcc-------HHHHHHHHHHHHhcCcHHHHHH
Q 041259 145 ---DMIP-DTTAYTALIDGYLKHESFKEALNLKNRMTEVG-------VDLD-------LNAYTSLVWGLSRCGHLQEARV 206 (257)
Q Consensus 145 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~li~~~~~~~~~~~a~~ 206 (257)
+..| ...++..+...+...|++++|...++++.+.. ..+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 34578888999999999999999999887631 1111 1222333333444455555666
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 207 LFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.+...... .+....++..+..+|.+.|++++|.+.+++..+
T Consensus 266 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66655543 233456788899999999999999999998875
No 44
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.72 E-value=7.2e-16 Score=121.96 Aligned_cols=214 Identities=14% Similarity=-0.008 Sum_probs=181.7
Q ss_pred hhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHH
Q 041259 26 FEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEP-SEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFG 104 (257)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 104 (257)
++++...++..... .+.+...+..+...+...|++ ++|++.|++..+.. +.+..+|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45556666665544 245788899999999999999 99999999998874 3367899999999999999999999999
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhc---------CcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc--------cCHH
Q 041259 105 RMPDFGLHPNVAVYTALIDGLCKK---------NCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKH--------ESFK 167 (257)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 167 (257)
+..+. .|+...+..+...+... |++++|...+++..+..+. +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99876 47778889999999999 9999999999999887655 788999999999988 9999
Q ss_pred HHHHHHHHHHHcCCC--ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041259 168 EALNLKNRMTEVGVD--LDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNE 245 (257)
Q Consensus 168 ~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (257)
+|...|++..+.... -+...|..+..++...|++++|...|++..+.. +.+...+..+..++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999986431 378899999999999999999999999998753 33566788888999999999999876543
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.71 E-value=7.9e-15 Score=101.24 Aligned_cols=165 Identities=17% Similarity=0.144 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 041259 45 TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDG 124 (257)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (257)
+..|..+...+...|++++|++.|++.++.. +-+..++..+..++.+.|++++|...+....... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 3444444445555555555555555544432 1134444444445555555555555444443332 2233344444444
Q ss_pred HHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHH
Q 041259 125 LCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEA 204 (257)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 204 (257)
+...++++.|...+.......+. +...+..+..++...|++++|.+.|++..+..+. +..++..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 44555555555555544443322 3444445555555555555555555555444322 444455555555555555555
Q ss_pred HHHHHHHHh
Q 041259 205 RVLFHEMIG 213 (257)
Q Consensus 205 ~~~~~~~~~ 213 (257)
...|++.++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.71 E-value=8.7e-15 Score=101.03 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=149.7
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHH
Q 041259 8 ADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLI 87 (257)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (257)
-+..+|..+...+.+.|++++|++.|++..+.. |-+..++..+..++.+.|++++|+..++...... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 356789999999999999999999999999875 5678899999999999999999999999998764 33677888888
Q ss_pred HHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHH
Q 041259 88 DGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFK 167 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (257)
..+...++++.+...+.+..... +.+...+..+...+...|++++|++.|++..+.++. +..+|..+..+|...|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 99999999999999999987764 456788899999999999999999999999887655 7889999999999999999
Q ss_pred HHHHHHHHHHHc
Q 041259 168 EALNLKNRMTEV 179 (257)
Q Consensus 168 ~a~~~~~~~~~~ 179 (257)
+|...|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999999885
No 47
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.6e-15 Score=108.27 Aligned_cols=195 Identities=17% Similarity=0.107 Sum_probs=166.9
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC--Ccc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHH
Q 041259 8 ADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGL--TAN----TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVV 81 (257)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (257)
.+...|..+...+...|++++|.+.++.+.+... .++ ..++..+..++...|++++|+..+++..+.. |+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~- 112 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA- 112 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-
Confidence 5677889999999999999999999999887531 111 5788999999999999999999999998863 332
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 041259 82 TFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYL 161 (257)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (257)
..+...|++++|...++++.... +.+...+..+...+...|++++|...++...+.... +..++..+...+.
T Consensus 113 ------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 184 (258)
T 3uq3_A 113 ------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALA 184 (258)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred ------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHH
Confidence 34666788999999999988754 445678888999999999999999999999887654 7889999999999
Q ss_pred cccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 162 KHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
..|++++|...++...+... .+..++..+..++...|++++|...+++..+.
T Consensus 185 ~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 185 KLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998753 36888999999999999999999999998874
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=1.4e-13 Score=101.00 Aligned_cols=193 Identities=12% Similarity=0.069 Sum_probs=169.6
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh----cCcHHHHHHHHHhcccCCCCCCHHHH
Q 041259 43 ANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCK----SGLVREAIDYFGRMPDFGLHPNVAVY 118 (257)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 118 (257)
-+..++..+...+...|++++|+..|++..+.+ +..++..+...+.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 356778888899999999999999999998843 55778889999999 999999999999998875 67888
Q ss_pred HHHHHHHHh----cCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHcCCCccHHHHHH
Q 041259 119 TALIDGLCK----KNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLK----HESFKEALNLKNRMTEVGVDLDLNAYTS 190 (257)
Q Consensus 119 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (257)
..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 889999999 999999999999998875 77889999999998 999999999999999876 5667788
Q ss_pred HHHHHHh----cCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 041259 191 LVWGLSR----CGHLQEARVLFHEMIGRGILPDEILCISLLKKHYE----RGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 191 li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 250 (257)
+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.+++..+.+
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 8888888 999999999999999874 56777889999999 999999999999988764
No 49
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=2e-17 Score=126.37 Aligned_cols=186 Identities=15% Similarity=0.109 Sum_probs=67.3
Q ss_pred hcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHH
Q 041259 22 IESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAID 101 (257)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (257)
+.|++++|.++++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|.+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5688999999999983 2358999999999999999999999653 477899999999999999999999
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCC
Q 041259 102 YFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGV 181 (257)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (257)
+++...+. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777664 4567888999999999999999988775 267779999999999999999999999976
Q ss_pred CccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 041259 182 DLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQ 243 (257)
Q Consensus 182 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (257)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|....
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~ 200 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 200 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHH
Confidence 47999999999999999999999988 27899999999999999999996543
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=5.3e-14 Score=103.07 Aligned_cols=213 Identities=11% Similarity=0.029 Sum_probs=170.1
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTA--NTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVL 86 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (257)
+...+..+...+...|++++|.+.++.+.+.+..+ ....|..+..++...|++++|+..+++..+.. +.+..++..+
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 114 (272)
T 3u4t_A 36 SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQI 114 (272)
T ss_dssp CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHH
Confidence 45588889999999999999999999998843111 23458899999999999999999999998864 3367889999
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccC-
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHES- 165 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 165 (257)
...+...|++++|...+++..+.. +.+...+..+...+...+++++|...|+.+.+..+. +...+..+..++...++
T Consensus 115 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~ 192 (272)
T 3u4t_A 115 GSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPD 192 (272)
T ss_dssp HHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcc
Confidence 999999999999999999998873 456777777773445556999999999999887544 57788888888888888
Q ss_pred --HHHHHHHHHHHHHcC-CCcc------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc-HHHHHHH
Q 041259 166 --FKEALNLKNRMTEVG-VDLD------LNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD-EILCISL 226 (257)
Q Consensus 166 --~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 226 (257)
+++|...+++..+.. ..|+ ..+|..+...+...|++++|...+++..+. .|+ ......+
T Consensus 193 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l 261 (272)
T 3u4t_A 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKAIDGL 261 (272)
T ss_dssp CSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHHHHHh
Confidence 888888888877642 1122 257888999999999999999999999985 344 4444433
No 51
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.67 E-value=5.3e-15 Score=117.03 Aligned_cols=196 Identities=13% Similarity=0.006 Sum_probs=172.6
Q ss_pred ChhhHHHHHHHHHhcCCh-hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKF-EDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLI 87 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (257)
+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|+..|++..+.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 667888889999999999 99999999998875 4568899999999999999999999999999874 5678899999
Q ss_pred HHHHhc---------CcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc--------CcHHHHHHHHHHhhhCCCC--C
Q 041259 88 DGLCKS---------GLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKK--------NCIERARNLFDEMPKRDMI--P 148 (257)
Q Consensus 88 ~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~--~ 148 (257)
..+... |++++|...+++..+.. +.+...|..+..+|... |++++|...|++..+..+. .
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 999999 99999999999998764 45688899999999998 9999999999999886541 2
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHH
Q 041259 149 DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFH 209 (257)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 209 (257)
+...|..+..+|...|++++|...|++..+.... +...+..+..++...|++++|...+.
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999999999887543 67788889999999999999887654
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=1.5e-13 Score=102.74 Aligned_cols=202 Identities=11% Similarity=-0.013 Sum_probs=165.1
Q ss_pred ChhhHHHHHHHHH-------hcCCh-------hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041259 9 DLPLYGTIIWGLC-------IESKF-------EDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS 74 (257)
Q Consensus 9 ~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (257)
+...|..+...+. +.|++ ++|..+|++..+.-.+-+...|..++..+.+.|++++|..+|++..+.
T Consensus 49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 128 (308)
T 2ond_A 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 5566777777665 35886 899999999998312446678999999999999999999999999985
Q ss_pred CCcc-cHH-HHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH-hcCcHHHHHHHHHHhhhCCCCCCHH
Q 041259 75 RIEV-TVV-TFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLC-KKNCIERARNLFDEMPKRDMIPDTT 151 (257)
Q Consensus 75 ~~~~-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (257)
.| +.. +|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|..+|+...+..+. +..
T Consensus 129 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 204 (308)
T 2ond_A 129 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPE 204 (308)
T ss_dssp --SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHH
T ss_pred --cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHH
Confidence 34 343 89999999999999999999999998764 345555554444322 369999999999999876544 788
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHcC-CCc--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 152 AYTALIDGYLKHESFKEALNLKNRMTEVG-VDL--DLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
.|..++..+...|++++|..+|++..... ..| ....|..++......|+.+.|..+++++.+.
T Consensus 205 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999863 344 4678899999999999999999999999875
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=1.3e-14 Score=112.68 Aligned_cols=236 Identities=17% Similarity=0.125 Sum_probs=180.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc----C-CcccHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTANT----VICTTLMDAYFKAGEPSEALSLLDEMLDS----R-IEVTVVT 82 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 82 (257)
.+..+...+...|++++|...|+++.+.+ +.+. ..+..+...+...|++++|+..+++..+. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34556677889999999999999998874 2233 47888889999999999999999988653 1 1234567
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhcccC----C-CCCCHHHHHHHHHHHHhcCc-----------------HHHHHHHHHH
Q 041259 83 FCVLIDGLCKSGLVREAIDYFGRMPDF----G-LHPNVAVYTALIDGLCKKNC-----------------IERARNLFDE 140 (257)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 140 (257)
+..+...|...|++++|...+++..+. + .+....++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888999999999999999999887543 1 12234577788889999999 9999998887
Q ss_pred hhhC----CC-CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC-----ccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 041259 141 MPKR----DM-IPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVD-----LDLNAYTSLVWGLSRCGHLQEARVLFHE 210 (257)
Q Consensus 141 ~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~ 210 (257)
..+. +. .....++..+...+...|++++|...+++..+.... ....++..+...+...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6442 11 112357788888999999999999999988764211 1123788889999999999999999998
Q ss_pred HHhCC--CC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 211 MIGRG--IL---PDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 211 ~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
..... .. .....+..+...+...|++++|.+.+++..+
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 87631 10 1245677888899999999999999998765
No 54
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.65 E-value=1.7e-13 Score=94.28 Aligned_cols=164 Identities=17% Similarity=0.131 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 041259 81 VTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGY 160 (257)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (257)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 445556666667777777777777766543 345666666777777777777777777776665432 566666777777
Q ss_pred HcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 041259 161 LKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAI 240 (257)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 240 (257)
...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777766532 356666777777777777777777777776652 334566677777777777777777
Q ss_pred HHHHHHHh
Q 041259 241 ELQNEMMG 248 (257)
Q Consensus 241 ~~~~~m~~ 248 (257)
+.+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777655
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=3.7e-14 Score=108.69 Aligned_cols=197 Identities=11% Similarity=0.048 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc-HHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 041259 45 TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGL-VREAIDYFGRMPDFGLHPNVAVYTALID 123 (257)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (257)
...|..+..++...|++++|+..+++.++.. +-+..+|+.+..++...|+ +++|+..|+++.... +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4578888889999999999999999999874 3367889999999999996 999999999998865 557889999999
Q ss_pred HHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCcHH
Q 041259 124 GLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSR-CGHLQ 202 (257)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~ 202 (257)
++...|++++|+..|+++.+.+.. +...|..+..++...|++++|+..++++.+..+. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999998766 8899999999999999999999999999998654 78899999999998 66657
Q ss_pred HH-----HHHHHHHHhCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 041259 203 EA-----RVLFHEMIGRGILPDEILCISLLKKHYERG--NMDEAIELQNEM 246 (257)
Q Consensus 203 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m 246 (257)
+| +..+++.+... +-+...|..+...+...| ++++|++.+.++
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 77 58888888752 235678888888888888 689999998887
No 56
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=4.4e-12 Score=100.89 Aligned_cols=223 Identities=12% Similarity=0.024 Sum_probs=130.2
Q ss_pred ChhhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCcccH
Q 041259 9 DLPLYGTIIWGLCI----ESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFK----AGEPSEALSLLDEMLDSRIEVTV 80 (257)
Q Consensus 9 ~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 80 (257)
+...+..+...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|..+|++..+.| ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44455555556665 677777777777776653 34556666666666 667777777777776654 44
Q ss_pred HHHHHHHHHHHh----cCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHhhhCCCCCCHHH
Q 041259 81 VTFCVLIDGLCK----SGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK----KNCIERARNLFDEMPKRDMIPDTTA 152 (257)
Q Consensus 81 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (257)
..+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|.+.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 555556666665 566777777777666543 34455555555655 566666666666665543 4555
Q ss_pred HHHHHHHHHc----ccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhCCCCCcHHHHH
Q 041259 153 YTALIDGYLK----HESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSR----CGHLQEARVLFHEMIGRGILPDEILCI 224 (257)
Q Consensus 153 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (257)
+..+...|.. .++.++|...|++..+.+ +...+..+...+.. .+++++|..+|++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5555555555 566666666666665543 33444445555543 455666666665555542 233344
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhC
Q 041259 225 SLLKKHYE----RGNMDEAIELQNEMMGR 249 (257)
Q Consensus 225 ~l~~~~~~----~g~~~~a~~~~~~m~~~ 249 (257)
.+...+.. .+++++|.++|++..+.
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 44444444 45555555555555443
No 57
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=3.8e-12 Score=101.24 Aligned_cols=224 Identities=13% Similarity=0.066 Sum_probs=142.2
Q ss_pred ChhhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCcccH
Q 041259 9 DLPLYGTIIWGLCI----ESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFK----AGEPSEALSLLDEMLDSRIEVTV 80 (257)
Q Consensus 9 ~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 80 (257)
+...+..|...|.. .+++++|.+.|+...+.| +...+..|...|.. .+++++|+.+|++..+.+ ++
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 147 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RD 147 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34455666666666 777788888887777654 45556666666766 667777777777777654 44
Q ss_pred HHHHHHHHHHHh----cCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHhhhCCCCCCHHH
Q 041259 81 VTFCVLIDGLCK----SGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK----KNCIERARNLFDEMPKRDMIPDTTA 152 (257)
Q Consensus 81 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (257)
..+..+...|.. .++.++|.++|++..+.+ +...+..+...|.. .++.++|...|+...+.+ +...
T Consensus 148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 221 (490)
T 2xm6_A 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELG 221 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHH
Confidence 556666666665 667777777777776643 45566666666666 677777777777766653 4455
Q ss_pred HHHHHHHHHc----ccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhCCCCCcHHHHH
Q 041259 153 YTALIDGYLK----HESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSR----CGHLQEARVLFHEMIGRGILPDEILCI 224 (257)
Q Consensus 153 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (257)
+..+...|.. .+++++|..+|++..+.+ +...+..+...+.. .+++++|..+|++..+.| +...+.
T Consensus 222 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~ 295 (490)
T 2xm6_A 222 QLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQY 295 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHH
Confidence 5566666554 566777777777666554 33445555555555 566666666666666543 334445
Q ss_pred HHHHHHHhc-----CCHHHHHHHHHHHHhCC
Q 041259 225 SLLKKHYER-----GNMDEAIELQNEMMGRG 250 (257)
Q Consensus 225 ~l~~~~~~~-----g~~~~a~~~~~~m~~~~ 250 (257)
.+...|... +++++|..++++..+.|
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 555555555 66666666666655543
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.64 E-value=6.3e-15 Score=114.45 Aligned_cols=238 Identities=13% Similarity=0.070 Sum_probs=184.1
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc----C-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----C-CcccH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKEN----G-LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS----R-IEVTV 80 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 80 (257)
..|..+...+...|++++|.+.+++..+. + .+....++..+...+...|++++|...+++..+. + .+...
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 46888889999999999999999988653 1 1234567888899999999999999999988654 1 12235
Q ss_pred HHHHHHHHHHHhcCc-----------------HHHHHHHHHhcccC----CC-CCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 041259 81 VTFCVLIDGLCKSGL-----------------VREAIDYFGRMPDF----GL-HPNVAVYTALIDGLCKKNCIERARNLF 138 (257)
Q Consensus 81 ~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 138 (257)
.++..+...+...|+ +++|...+++..+. +. .....++..+...+...|++++|...+
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 678888999999999 99999988876432 11 122347778889999999999999999
Q ss_pred HHhhhCCCC-CC----HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC-----ccHHHHHHHHHHHHhcCcHHHHHHHH
Q 041259 139 DEMPKRDMI-PD----TTAYTALIDGYLKHESFKEALNLKNRMTEVGVD-----LDLNAYTSLVWGLSRCGHLQEARVLF 208 (257)
Q Consensus 139 ~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~ 208 (257)
++..+.... ++ ..++..+...+...|++++|...+++..+.... ....++..+...+...|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 987653211 11 237888899999999999999999987753211 12567888999999999999999999
Q ss_pred HHHHhC----CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 209 HEMIGR----GI-LPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 209 ~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
++.... +. ......+..+...+...|++++|.+.+++..+
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 988763 11 11234777889999999999999999998865
No 59
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.63 E-value=5.3e-14 Score=108.41 Aligned_cols=230 Identities=10% Similarity=-0.005 Sum_probs=175.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----C--CcccHHHHH
Q 041259 16 IIWGLCIESKFEDSKLLLSEMKEN----GLTA-NTVICTTLMDAYFKAGEPSEALSLLDEMLDS----R--IEVTVVTFC 84 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~ 84 (257)
....+...|++++|.+.+++..+. +-++ ...++..+...+...|+++.|+..+++..+. + .+....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445667889999999999999764 1111 3467888999999999999999999988753 1 111246788
Q ss_pred HHHHHHHhcCcHHHHHHHHHhcccC----CCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh-----CCCCCCHHHHH
Q 041259 85 VLIDGLCKSGLVREAIDYFGRMPDF----GLH-PNVAVYTALIDGLCKKNCIERARNLFDEMPK-----RDMIPDTTAYT 154 (257)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 154 (257)
.+...|...|++++|...+++..+. +-. ....++..+...|...|++++|...+++..+ ........++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999887642 111 1124778899999999999999999998876 33133467788
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhCCCCCc-HHHHHHH
Q 041259 155 ALIDGYLKHESFKEALNLKNRMTEV----GVDLDLNAYTSLVWGLSRCGH---LQEARVLFHEMIGRGILPD-EILCISL 226 (257)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l 226 (257)
.+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999987653 122223346778888888998 67777776655 33333 4567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 041259 227 LKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 227 ~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
...|...|++++|.+.+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999999876
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=4.5e-14 Score=109.26 Aligned_cols=241 Identities=16% Similarity=0.112 Sum_probs=179.0
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCcc
Q 041259 7 KADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTAN----TVICTTLMDAYFKAGEPSEALSLLDEMLDS----RIEV 78 (257)
Q Consensus 7 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 78 (257)
.+....+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4455667778888899999999999999998864 223 356788888999999999999999887542 2222
Q ss_pred -cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCC-CCC----HHHHHHHHHHHHhcCc--------------------HH
Q 041259 79 -TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGL-HPN----VAVYTALIDGLCKKNC--------------------IE 132 (257)
Q Consensus 79 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~ 132 (257)
...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 356778888999999999999999887754210 011 4477788888999999 99
Q ss_pred HHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcC----CC-ccHHHHHHHHHHHHhcCcHH
Q 041259 133 RARNLFDEMPKR----DMIP-DTTAYTALIDGYLKHESFKEALNLKNRMTEVG----VD-LDLNAYTSLVWGLSRCGHLQ 202 (257)
Q Consensus 133 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~~~~~ 202 (257)
+|...+++.... +..| ...++..+...+...|++++|...+++..+.. .. ....++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999888876432 1111 23567788888999999999999998876531 11 11347888888999999999
Q ss_pred HHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 203 EARVLFHEMIGR----GILP-DEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 203 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
+|...+++.... +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999887753 1111 145677788889999999999999988765
No 61
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.62 E-value=6.3e-14 Score=115.46 Aligned_cols=164 Identities=14% Similarity=0.094 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 041259 45 TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDG 124 (257)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (257)
..+|+.|..++.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|+..|++..+.. +-+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555555555555555555554432 1134445555555555555555555555544432 2234455555555
Q ss_pred HHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHH
Q 041259 125 LCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEA 204 (257)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 204 (257)
+...|++++|++.|++..+.+.. +...|..+..++...|++++|.+.|++..+.... +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 55555555555555555444332 4445555555555555555555555555554322 344555555555555555555
Q ss_pred HHHHHHHH
Q 041259 205 RVLFHEMI 212 (257)
Q Consensus 205 ~~~~~~~~ 212 (257)
.+.++++.
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 62
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.61 E-value=2.3e-13 Score=93.59 Aligned_cols=163 Identities=18% Similarity=0.095 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 041259 47 ICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLC 126 (257)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (257)
.+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44455555556666666666666555432 2244555556666666666666666666655432 334555566666666
Q ss_pred hcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHH
Q 041259 127 KKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARV 206 (257)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 206 (257)
..|++++|...++.+...... +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666666554332 555666666666666777777777666665532 245666666667777777777777
Q ss_pred HHHHHHh
Q 041259 207 LFHEMIG 213 (257)
Q Consensus 207 ~~~~~~~ 213 (257)
.+++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=4.1e-14 Score=109.49 Aligned_cols=238 Identities=13% Similarity=0.073 Sum_probs=181.8
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc----CCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----Cc-ccH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKEN----GLT-ANTVICTTLMDAYFKAGEPSEALSLLDEMLDSR----IE-VTV 80 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~ 80 (257)
.+|..+...+...|++++|...++++... +-. ....++..+...+...|++++|...+++..+.. .. ...
T Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 127 (406)
T 3sf4_A 48 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 127 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchH
Confidence 56888889999999999999999987543 211 235577888899999999999999999886531 11 124
Q ss_pred HHHHHHHHHHHhcCc--------------------HHHHHHHHHhcccC----CCC-CCHHHHHHHHHHHHhcCcHHHHH
Q 041259 81 VTFCVLIDGLCKSGL--------------------VREAIDYFGRMPDF----GLH-PNVAVYTALIDGLCKKNCIERAR 135 (257)
Q Consensus 81 ~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~ 135 (257)
.++..+...+...|+ +++|...+++.... +.. ....++..+...+...|++++|.
T Consensus 128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 207 (406)
T 3sf4_A 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 207 (406)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHH
Confidence 578888899999999 99999988876432 111 12346788889999999999999
Q ss_pred HHHHHhhhCCCC-CC----HHHHHHHHHHHHcccCHHHHHHHHHHHHHcC----CCc-cHHHHHHHHHHHHhcCcHHHHH
Q 041259 136 NLFDEMPKRDMI-PD----TTAYTALIDGYLKHESFKEALNLKNRMTEVG----VDL-DLNAYTSLVWGLSRCGHLQEAR 205 (257)
Q Consensus 136 ~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~~~~~~a~ 205 (257)
..+++..+.... ++ ..++..+...+...|++++|...+++..+.. ..+ ...++..+...+...|++++|.
T Consensus 208 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 287 (406)
T 3sf4_A 208 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 999987643111 12 3478888999999999999999999876531 111 1567888999999999999999
Q ss_pred HHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 206 VLFHEMIGR----GILP-DEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 206 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
..+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 288 DYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999988753 1111 145778888999999999999999998765
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.60 E-value=1.3e-13 Score=113.58 Aligned_cols=166 Identities=13% Similarity=0.052 Sum_probs=148.6
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 041259 79 TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALID 158 (257)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (257)
+..+++.+...+.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..|++..+.+.. +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 57889999999999999999999999998764 456789999999999999999999999999887655 7889999999
Q ss_pred HHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHH
Q 041259 159 GYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDE 238 (257)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (257)
++...|++++|.+.|++..+.... +..+|..+..++...|++++|++.|++.++.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999987644 68899999999999999999999999999852 2246788899999999999999
Q ss_pred HHHHHHHHHh
Q 041259 239 AIELQNEMMG 248 (257)
Q Consensus 239 a~~~~~~m~~ 248 (257)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 65
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.60 E-value=2e-12 Score=103.82 Aligned_cols=217 Identities=11% Similarity=0.088 Sum_probs=174.1
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhcCCcccHHHHHHHHHHHHh
Q 041259 27 EDSKLLLSEMKENGLTANTVICTTLMDAYFK-------AGEPS-------EALSLLDEMLDSRIEVTVVTFCVLIDGLCK 92 (257)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (257)
+++..+|+++.... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36778899888763 5678889888888775 68887 899999999863234468889999999999
Q ss_pred cCcHHHHHHHHHhcccCCCCCC-H-HHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHcccCHHHH
Q 041259 93 SGLVREAIDYFGRMPDFGLHPN-V-AVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDG-YLKHESFKEA 169 (257)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 169 (257)
.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+.... +...|...+.. +...|+.++|
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHH
Confidence 99999999999999875 454 3 58888999999999999999999999876432 33344333322 3468999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041259 170 LNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRG-ILPD--EILCISLLKKHYERGNMDEAIELQNEM 246 (257)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m 246 (257)
..+|+...+... -+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+.++.+++
T Consensus 411 ~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 411 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999888643 367899999999999999999999999999863 2332 447888888888899999999999988
Q ss_pred Hh
Q 041259 247 MG 248 (257)
Q Consensus 247 ~~ 248 (257)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=1.8e-13 Score=102.91 Aligned_cols=236 Identities=17% Similarity=0.108 Sum_probs=154.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCc-ccHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTAN----TVICTTLMDAYFKAGEPSEALSLLDEMLDS----RIE-VTVVT 82 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 82 (257)
.+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455666778888888888888887763 223 356777778888888888888888776532 112 12456
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhcccCCC-CCC----HHHHHHHHHHHHhcCc--------------------HHHHHHH
Q 041259 83 FCVLIDGLCKSGLVREAIDYFGRMPDFGL-HPN----VAVYTALIDGLCKKNC--------------------IERARNL 137 (257)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 137 (257)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77777888888888888888877643210 011 3366677777778888 8888777
Q ss_pred HHHhhhC----CCC-CCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcC----C-CccHHHHHHHHHHHHhcCcHHHHHHH
Q 041259 138 FDEMPKR----DMI-PDTTAYTALIDGYLKHESFKEALNLKNRMTEVG----V-DLDLNAYTSLVWGLSRCGHLQEARVL 207 (257)
Q Consensus 138 ~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~~~~~~a~~~ 207 (257)
+++.... +.. ....++..+...+...|++++|...+++..+.. . .....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7765431 111 123456677777788888888888877765431 1 11123667777777888888888888
Q ss_pred HHHHHhC----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 208 FHEMIGR----GILP-DEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 208 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
+++.... +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8776643 1111 144566677777788888888888777654
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=5.8e-14 Score=105.65 Aligned_cols=240 Identities=13% Similarity=0.063 Sum_probs=182.2
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCc-cc
Q 041259 10 LPLYGTIIWGLCIESKFEDSKLLLSEMKEN----GL-TANTVICTTLMDAYFKAGEPSEALSLLDEMLDS----RIE-VT 79 (257)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~ 79 (257)
...+..+...+...|++++|.+.+++..+. +. +....++..+...+...|++++|...+++..+. +.. ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 357888899999999999999999987543 21 123557888899999999999999999987653 111 12
Q ss_pred HHHHHHHHHHHHhcCc--------------------HHHHHHHHHhcccC----CC-CCCHHHHHHHHHHHHhcCcHHHH
Q 041259 80 VVTFCVLIDGLCKSGL--------------------VREAIDYFGRMPDF----GL-HPNVAVYTALIDGLCKKNCIERA 134 (257)
Q Consensus 80 ~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a 134 (257)
..++..+...+...|+ +++|...+++.... +. ......+..+...+...|++++|
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3478888899999999 99999988876432 11 11234677888899999999999
Q ss_pred HHHHHHhhhCCCC-C----CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcC----CC-ccHHHHHHHHHHHHhcCcHHHH
Q 041259 135 RNLFDEMPKRDMI-P----DTTAYTALIDGYLKHESFKEALNLKNRMTEVG----VD-LDLNAYTSLVWGLSRCGHLQEA 204 (257)
Q Consensus 135 ~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~~~~~~a 204 (257)
...+++..+.... + ...++..+...+...|++++|...+++..+.. .. ....++..+...+...|++++|
T Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999887543111 1 13478888899999999999999999876531 11 1156788889999999999999
Q ss_pred HHHHHHHHhC----CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 205 RVLFHEMIGR----GI-LPDEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 205 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
...+++.... +. .....++..+...+...|++++|.+.+++..+.
T Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999988753 11 111446778899999999999999999998864
No 68
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.59 E-value=6.7e-14 Score=102.81 Aligned_cols=228 Identities=14% Similarity=0.028 Sum_probs=159.5
Q ss_pred HhcCChhhHHHHHHHHHHc-------CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------C-CcccHHHHHHH
Q 041259 21 CIESKFEDSKLLLSEMKEN-------GLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS------R-IEVTVVTFCVL 86 (257)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 86 (257)
...|++++|...+++..+. ..+....++..+...+...|++++|+..+++..+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4578888888888877652 22335667889999999999999999999998754 2 23346788899
Q ss_pred HHHHHhcCcHHHHHHHHHhcccC------C-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhC------CCCC-CHHH
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDF------G-LHPNVAVYTALIDGLCKKNCIERARNLFDEMPKR------DMIP-DTTA 152 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 152 (257)
...+...|++++|...+++.... . .+....++..+...+...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988653 1 1234567888899999999999999999988664 1122 3567
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHcC-------CCc-cHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhCCCCC
Q 041259 153 YTALIDGYLKHESFKEALNLKNRMTEVG-------VDL-DLNAYTSLVWGLSRCGHL------QEARVLFHEMIGRGILP 218 (257)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~-~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~ 218 (257)
+..+...+...|++++|...+++..+.. ..+ ....+..+.......+.. ..+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 8889999999999999999999887631 111 122333333333333322 222222221111 1122
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 219 DEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
....+..+...|...|++++|.+++++.++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999988753
No 69
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.57 E-value=1.1e-13 Score=101.59 Aligned_cols=159 Identities=13% Similarity=0.018 Sum_probs=123.5
Q ss_pred HHhcCChHHHHHHHHHHHh-------cCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccC------CC-CCCHHHHHH
Q 041259 55 YFKAGEPSEALSLLDEMLD-------SRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDF------GL-HPNVAVYTA 120 (257)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 120 (257)
....|++++|+..+++..+ ...+....++..+...+...|++++|...+++..+. +- +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3456777777777776654 222345678889999999999999999999988643 11 234567888
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhC------C-CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHc------C-CCccHH
Q 041259 121 LIDGLCKKNCIERARNLFDEMPKR------D-MIPDTTAYTALIDGYLKHESFKEALNLKNRMTEV------G-VDLDLN 186 (257)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~ 186 (257)
+...+...|++++|...+++.... . ......++..+...+...|++++|...+++..+. + .+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999987654 1 1224577888999999999999999999988765 1 122456
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 187 AYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
++..+..++...|++++|...+++..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788999999999999999999998876
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.57 E-value=9e-13 Score=101.36 Aligned_cols=228 Identities=8% Similarity=0.025 Sum_probs=173.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC--CC---ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----C-Ccc-cHHHHHH
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENG--LT---ANTVICTTLMDAYFKAGEPSEALSLLDEMLDS----R-IEV-TVVTFCV 85 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~-~~~~~~~ 85 (257)
...+...|++++|...|+++.+.. ++ ....++..+..+|...|+++.|+..+++..+. + ..+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 344568899999999999987641 11 13457888999999999999999999988653 1 111 3567888
Q ss_pred HHHHHHhcCcHHHHHHHHHhcccC----CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhh-----CCCCCCHHHHHH
Q 041259 86 LIDGLCKSGLVREAIDYFGRMPDF----GLHP-NVAVYTALIDGLCKKNCIERARNLFDEMPK-----RDMIPDTTAYTA 155 (257)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 155 (257)
+...|...|++++|.+.+++..+. +-++ ...++..+...|...|++++|...+++... .... ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 999999999999999999887542 1111 234677888999999999999999999876 4433 3678889
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHcC----CCccHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhCCCCCc-HHHHHHHH
Q 041259 156 LIDGYLKHESFKEALNLKNRMTEVG----VDLDLNAYTSLVWGLSRCGH---LQEARVLFHEMIGRGILPD-EILCISLL 227 (257)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 227 (257)
+...+...|++++|...+++..+.. .+.....+..+...+...++ +.+|...+++ .+..|+ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHH
Confidence 9999999999999999999987642 22234456666777778888 7777777665 322233 34667788
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 041259 228 KKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~m~~ 248 (257)
..|...|++++|.+.+++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998765
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=1.8e-12 Score=92.46 Aligned_cols=195 Identities=11% Similarity=-0.027 Sum_probs=145.3
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHH
Q 041259 8 ADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLI 87 (257)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (257)
.|...+......+...|++++|.+.|+...+...+++...+..+..++...|++++|+..+++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35677888888899999999999999999887533677777778889999999999999999998764 33677888899
Q ss_pred HHHHhcCcHHHHHHHHHhcccCCCCCCH-------HHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCC---HHHHHHHH
Q 041259 88 DGLCKSGLVREAIDYFGRMPDFGLHPNV-------AVYTALIDGLCKKNCIERARNLFDEMPKRDMIPD---TTAYTALI 157 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 157 (257)
.++...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|+...+.+ |+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 99999999999999999887653 3344 457777788888999999999999988763 33 45666677
Q ss_pred HHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 158 DGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
.++...| ...++.+...+.. +...|.... ....+.+++|...+++..+.
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 7765444 3444555554322 344444333 23456688899999888875
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.56 E-value=3.6e-12 Score=90.95 Aligned_cols=155 Identities=14% Similarity=-0.037 Sum_probs=100.8
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHH
Q 041259 43 ANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALI 122 (257)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (257)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 34566666667777777777777777777765433455666667777777777777777777776553 23455666677
Q ss_pred HHHHhcCcHHHHHHHHHHhhhCCCCCCH-------HHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCcc---HHHHHHHH
Q 041259 123 DGLCKKNCIERARNLFDEMPKRDMIPDT-------TAYTALIDGYLKHESFKEALNLKNRMTEVGVDLD---LNAYTSLV 192 (257)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li 192 (257)
..+...|++++|...+++..+..+. +. ..|..+...+...|++++|...+++..+.. |+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 7777777777777777776665433 33 446666677777777777777777776642 33 45566666
Q ss_pred HHHHhcCcH
Q 041259 193 WGLSRCGHL 201 (257)
Q Consensus 193 ~~~~~~~~~ 201 (257)
.++...|+.
T Consensus 161 ~~~~~~~~~ 169 (228)
T 4i17_A 161 VLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655544
No 73
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=6.4e-12 Score=99.29 Aligned_cols=171 Identities=12% Similarity=0.007 Sum_probs=108.7
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHc--------CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----
Q 041259 8 ADLPLYGTIIWGLCIESKFEDSKLLLSEMKEN--------GLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSR---- 75 (257)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 75 (257)
.....||.+...+...|++++|++.|++..+. ..+....+|..+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999887542 123346789999999999999999999998876421
Q ss_pred ---CcccHHHHHHHHHHHHh--cCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHH---Hhc-------------------
Q 041259 76 ---IEVTVVTFCVLIDGLCK--SGLVREAIDYFGRMPDFGLHPNVAVYTALIDGL---CKK------------------- 128 (257)
Q Consensus 76 ---~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~------------------- 128 (257)
......++.....++.. .+++++|...|++..+.. +.+...+..+..++ ...
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 11134556555555544 457888998888876543 22333333322221 112
Q ss_pred -------------------CcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcC
Q 041259 129 -------------------NCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVG 180 (257)
Q Consensus 129 -------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (257)
+++++|.+.+++.....+. +..++..+...|...|++++|...+++..+..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 3344555555555444332 55566666777777777777777777766543
No 74
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=4.8e-12 Score=100.01 Aligned_cols=122 Identities=12% Similarity=-0.066 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHH--HHHHHHH-HHHhcCcHHHHHHHH
Q 041259 132 ERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLN--AYTSLVW-GLSRCGHLQEARVLF 208 (257)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~~~~~~a~~~~ 208 (257)
+.|...++...+.++. +..++..+...+...|++++|...|++..+....+... .+..+.. .....|++++|+..+
T Consensus 317 ~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y 395 (472)
T 4g1t_A 317 GHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHF 395 (472)
T ss_dssp HHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3344444444333222 33445566667777888888888888887765443221 2222222 234667888888877
Q ss_pred HHHHhCC-----------------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 041259 209 HEMIGRG-----------------------ILPDEILCISLLKKHYERGNMDEAIELQNEMMGRG-LLSG 254 (257)
Q Consensus 209 ~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~ 254 (257)
.+..+.. .+.+..+|..+..+|...|++++|++.|++.++.| ..|+
T Consensus 396 ~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 396 IEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 7766531 12345677778888888888888888888887754 3444
No 75
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=1.8e-11 Score=98.37 Aligned_cols=202 Identities=11% Similarity=-0.010 Sum_probs=162.0
Q ss_pred ChhhHHHHHHHHHh-------cCChh-------hHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041259 9 DLPLYGTIIWGLCI-------ESKFE-------DSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS 74 (257)
Q Consensus 9 ~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (257)
+...|......+.+ .|+++ +|..+|++..+.-.|.+...|..++..+.+.|++++|..+|+++.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 55677777777765 69987 89999999986323556889999999999999999999999999986
Q ss_pred CCccc--HHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHH-HHhcCcHHHHHHHHHHhhhCCCCCCHH
Q 041259 75 RIEVT--VVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDG-LCKKNCIERARNLFDEMPKRDMIPDTT 151 (257)
Q Consensus 75 ~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (257)
.|+ ...|..++..+.+.|++++|.++|++..+.. +.+...|...... +...|+.++|..+|+...+..+. +..
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~ 426 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPE 426 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHH
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHH
Confidence 343 3589999999999999999999999998753 2233333332222 34689999999999998876543 688
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHcCC-Cc--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 152 AYTALIDGYLKHESFKEALNLKNRMTEVGV-DL--DLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
.|..++..+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+..+..++.+.
T Consensus 427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 427 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988643 22 2457888888888999999999999988874
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.50 E-value=3.5e-11 Score=92.24 Aligned_cols=234 Identities=11% Similarity=0.003 Sum_probs=155.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCccHH----HHHHHHHHHHhcCChHHHHHHHHHHHhc----CCc-ccHHHHHH
Q 041259 15 TIIWGLCIESKFEDSKLLLSEMKENGLTANTV----ICTTLMDAYFKAGEPSEALSLLDEMLDS----RIE-VTVVTFCV 85 (257)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 85 (257)
.....+...|++++|...+++........+.. ++..+...+...|++++|...+++.... +.. ....++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34455667899999999998887753222222 4566667788889999999988887642 111 01233566
Q ss_pred HHHHHHhcCcHHHHHHHHHhcccC----CCC--C-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC----CCHHHHH
Q 041259 86 LIDGLCKSGLVREAIDYFGRMPDF----GLH--P-NVAVYTALIDGLCKKNCIERARNLFDEMPKRDMI----PDTTAYT 154 (257)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~ 154 (257)
+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... ....++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777888889999998888877532 211 2 2345566777888889999999988886543221 1235677
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHcCCCcc--HHHHH----HHHHHHHhcCcHHHHHHHHHHHHhCCCCC---cHHHHHH
Q 041259 155 ALIDGYLKHESFKEALNLKNRMTEVGVDLD--LNAYT----SLVWGLSRCGHLQEARVLFHEMIGRGILP---DEILCIS 225 (257)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 225 (257)
.+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 778888889999999998888765321111 11111 23344678899999999888876543211 1224566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 041259 226 LLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
+...+...|++++|...+++..+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 77788888999999888887654
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.49 E-value=1.8e-11 Score=93.83 Aligned_cols=237 Identities=10% Similarity=0.024 Sum_probs=170.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcC--C-Cc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCc--c-c
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENG--L-TA--NTVICTTLMDAYFKAGEPSEALSLLDEMLDS----RIE--V-T 79 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 79 (257)
.++.+...+...|++++|.+.+++..... . .+ ...++..+...+...|++++|...+++..+. +.. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 45667778888999999999999876531 1 11 1234567778899999999999999988653 221 2 3
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHhcccC----CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCC--HHHH
Q 041259 80 VVTFCVLIDGLCKSGLVREAIDYFGRMPDF----GLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPD--TTAY 153 (257)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 153 (257)
...+..+...+...|++++|...+++.... +......++..+...+...|++++|...+++.......++ ....
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 456677888999999999999999887543 2111345677888899999999999999998764311111 1111
Q ss_pred H----HHHHHHHcccCHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCcH-H
Q 041259 154 T----ALIDGYLKHESFKEALNLKNRMTEVGVDL---DLNAYTSLVWGLSRCGHLQEARVLFHEMIGR----GILPDE-I 221 (257)
Q Consensus 154 ~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~ 221 (257)
. ..+..+...|++++|...++........+ ....+..+...+...|++++|...+++.... |..++. .
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 1 23344778999999999999877643221 2335677888999999999999999988653 222222 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 222 LCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.+..+..++...|+.++|...+++...
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566677888999999999999988764
No 78
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.49 E-value=4.7e-11 Score=102.38 Aligned_cols=203 Identities=11% Similarity=0.131 Sum_probs=133.1
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 041259 10 LPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDG 89 (257)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (257)
..+|..+..++...|++++|.+.|.+. -|...|..++.++.+.|++++|.+++....+.. +++...+.++.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 1176 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHH
Confidence 456677777777777777777777442 455666777777777777777777777666543 232233347777
Q ss_pred HHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHH
Q 041259 90 LCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEA 169 (257)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (257)
|++.+++++...+. . .++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|
T Consensus 1177 YAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 77777766433332 1 345556666777777788888888777774 3677777778888888888
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 170 LNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
.+.+++. .+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+++++..+
T Consensus 1241 IEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1241 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777755 14566666666666666666666544332 2245556677777777777777777776554
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.48 E-value=4.7e-12 Score=93.90 Aligned_cols=194 Identities=12% Similarity=0.031 Sum_probs=124.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc----CCccc-HHHHHHHHHHHHhcCcHHHHHHHHHhcccC----CCCC-CHHHHHHH
Q 041259 52 MDAYFKAGEPSEALSLLDEMLDS----RIEVT-VVTFCVLIDGLCKSGLVREAIDYFGRMPDF----GLHP-NVAVYTAL 121 (257)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l 121 (257)
...|...|++++|...|++.... +.++. ..+|+.+..+|...|++++|+..+++.... |-.. ...++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566778888888888777543 22222 457777888888888888888877776532 1100 13467777
Q ss_pred HHHHHhc-CcHHHHHHHHHHhhhCCCCC-C----HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccH------HHHH
Q 041259 122 IDGLCKK-NCIERARNLFDEMPKRDMIP-D----TTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDL------NAYT 189 (257)
Q Consensus 122 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 189 (257)
...|... |++++|+..|++..+..... + ..++..+...+...|++++|...|++..+....... ..+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 7788875 88888888888765532110 1 345777788888888888888888888775433221 1466
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCCCCcH------HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 041259 190 SLVWGLSRCGHLQEARVLFHEMIGRGILPDE------ILCISLLKKHY--ERGNMDEAIELQNEMM 247 (257)
Q Consensus 190 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~m~ 247 (257)
.+..++...|++++|...+++..+. .|+. ..+..++.++. ..+++++|++.|+++.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 6777788888888888888877753 2221 12344555554 3456777777765543
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.45 E-value=1.7e-11 Score=90.92 Aligned_cols=203 Identities=11% Similarity=0.014 Sum_probs=149.9
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCcc-cH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKEN----GLTAN-TVICTTLMDAYFKAGEPSEALSLLDEMLDS----RIEV-TV 80 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 80 (257)
..|......+...|++++|.+.|.+.... |-++. ..+|+.+..+|.+.|++++|+..+++..+. |-.. -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35778888899999999999999988653 32222 568899999999999999999999988753 2111 14
Q ss_pred HHHHHHHHHHHhc-CcHHHHHHHHHhcccCCCC-CC----HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCH----
Q 041259 81 VTFCVLIDGLCKS-GLVREAIDYFGRMPDFGLH-PN----VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDT---- 150 (257)
Q Consensus 81 ~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 150 (257)
.+++.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|...|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788899999996 9999999999988653100 01 356888899999999999999999998876543222
Q ss_pred --HHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCc-c---HHHHHHHHHHHH--hcCcHHHHHHHHHHHHh
Q 041259 151 --TAYTALIDGYLKHESFKEALNLKNRMTEVGVDL-D---LNAYTSLVWGLS--RCGHLQEARVLFHEMIG 213 (257)
Q Consensus 151 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~li~~~~--~~~~~~~a~~~~~~~~~ 213 (257)
..|..+..++...|++++|...+++..+..... + ...+..++.++. ..+++++|...|+.+..
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 156778888999999999999999987643211 1 113444555554 45678888888766554
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.45 E-value=1.6e-11 Score=89.48 Aligned_cols=185 Identities=12% Similarity=-0.008 Sum_probs=99.9
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--cccHHHHH
Q 041259 10 LPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTAN---TVICTTLMDAYFKAGEPSEALSLLDEMLDSRI--EVTVVTFC 84 (257)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 84 (257)
...+..+...+.+.|++++|...|+.+.+.. |.+ ...+..+..++.+.|++++|+..|++..+... +....++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3344445555556666666666666665542 112 44555555556666666666666666655321 11233444
Q ss_pred HHHHHHHh--------cCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 041259 85 VLIDGLCK--------SGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTAL 156 (257)
Q Consensus 85 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (257)
.+..++.. .|++++|...|+++.+.. +.+......+.......+.. ...+..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~------------------~~~~~~l 154 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKL------------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHH------------------HHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHH------------------HHHHHHH
Confidence 55555555 555555555555554432 11111111110000000000 0113556
Q ss_pred HHHHHcccCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhC
Q 041259 157 IDGYLKHESFKEALNLKNRMTEVGVDL--DLNAYTSLVWGLSRC----------GHLQEARVLFHEMIGR 214 (257)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~ 214 (257)
...|...|++++|...|+.+.+..+.. ....+..+..++... |++++|...++++.+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 777888888888888888887754321 345677777777755 7888888888888875
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.44 E-value=2.5e-11 Score=88.39 Aligned_cols=152 Identities=8% Similarity=-0.018 Sum_probs=103.5
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CccHHHHHHHHHHHHh--------cCChHHHHHHHHHHHhcCCccc
Q 041259 10 LPLYGTIIWGLCIESKFEDSKLLLSEMKENGL--TANTVICTTLMDAYFK--------AGEPSEALSLLDEMLDSRIEVT 79 (257)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~ 79 (257)
...+..+..++.+.|++++|...|+.+.+... +.....+..+..++.. .|++++|+..|+++.+.... +
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~ 130 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-H 130 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-c
Confidence 56778888999999999999999999998631 1235567788888888 99999999999999886322 2
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCC--CHHHHHHHH
Q 041259 80 VVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIP--DTTAYTALI 157 (257)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 157 (257)
......+.......+.. ...+..+...|...|++++|...|+.+.+..+.. ....+..+.
T Consensus 131 ~~~~~a~~~~~~~~~~~------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~ 192 (261)
T 3qky_A 131 ELVDDATQKIRELRAKL------------------ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAM 192 (261)
T ss_dssp TTHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence 23332221111100000 1124556777788888888888888877654321 234566667
Q ss_pred HHHHcc----------cCHHHHHHHHHHHHHcC
Q 041259 158 DGYLKH----------ESFKEALNLKNRMTEVG 180 (257)
Q Consensus 158 ~~~~~~----------~~~~~a~~~~~~~~~~~ 180 (257)
.+|... |++++|...++.+.+..
T Consensus 193 ~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 193 RAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 777655 78888888888887754
No 83
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.43 E-value=3.3e-11 Score=78.11 Aligned_cols=129 Identities=19% Similarity=0.241 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 041259 118 YTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSR 197 (257)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 197 (257)
+..+...+...|++++|..+++.+.+.+.. +...+..+...+...|++++|...++++.+.+. .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 444555566666666666666665554332 455555566666666666666666666655432 244555666666666
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 198 CGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
.|++++|...++++.... +.+...+..+...+...|++++|.+.++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 666666666666666542 224455566666666667777777666666543
No 84
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.43 E-value=3.7e-11 Score=84.47 Aligned_cols=133 Identities=13% Similarity=0.012 Sum_probs=76.9
Q ss_pred HHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccC
Q 041259 86 LIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHES 165 (257)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (257)
+..++.+.|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.++. +..++..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 6666667777777777777666543 345666666777777777777777777777665543 56666666666654443
Q ss_pred --HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHH
Q 041259 166 --FKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCI 224 (257)
Q Consensus 166 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (257)
.+.+...++.... ..|....+.....++...|++++|...|++.++. .|+.....
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 2333444444322 2222233333444555567777777777777663 45544333
No 85
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.42 E-value=4.5e-11 Score=84.03 Aligned_cols=174 Identities=11% Similarity=-0.011 Sum_probs=130.4
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHhc
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTT----------------LMDAYFKAGEPSEALSLLDEMLDS 74 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~ 74 (257)
..+-.....+...|++++|...|+...+.. |-+...|.. +..++.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344445566788999999999999998864 334556767 889999999999999999999987
Q ss_pred CCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCc--HHHHHHHHHHhhhCCCCCCHHH
Q 041259 75 RIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNC--IERARNLFDEMPKRDMIPDTTA 152 (257)
Q Consensus 75 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 152 (257)
. +-+...+..+..++...|++++|...|++..+.. +.+..++..+...|...|+ .+.+...++.... ..|....
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 4 3378899999999999999999999999998765 4567788888888876654 3445555555542 2233334
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 041259 153 YTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSL 191 (257)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (257)
+.....++...|++++|...|++..+. .|+......+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 445566677789999999999999885 4565544443
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.42 E-value=1.1e-10 Score=85.77 Aligned_cols=178 Identities=11% Similarity=0.135 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 041259 64 ALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGL-HPNVAVYTALIDGLCKKNCIERARNLFDEMP 142 (257)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (257)
|+..++++...+ .++..++..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 23344444555666666666666666666544331 1244455555666666666666666666665
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHccc--CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 143 KRDMIP-----DTTAYTALIDG--YLKHE--SFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 143 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
+. .| +..+...++.+ ....| +..+|..+|+++.+.. |+..+-..++.++...|++++|++.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 22 23344444433 22223 5666666666655432 2322222223355666666666666664443
Q ss_pred C-----C----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 214 R-----G----ILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 214 ~-----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
. . -+.++.++..+|......|+ +|.+++.++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 2 0 02234444344444444554 55566665554
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.42 E-value=3.2e-11 Score=78.18 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=21.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041259 16 IIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEML 72 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (257)
+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++.
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 62 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333444444444444444443322 2223333333333444444444444444433
No 88
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=1.7e-11 Score=91.26 Aligned_cols=172 Identities=14% Similarity=0.082 Sum_probs=138.6
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccC-----
Q 041259 42 TANTVICTTLMDAYFKAGEPSEALSLLDEMLDS-------RIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDF----- 109 (257)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 109 (257)
+.+..++..+...+...|++++|+.+++++.+. ..+....++..+...+...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345667888999999999999999999998863 23445678888999999999999999999988653
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhC------CC-CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHc-
Q 041259 110 -G-LHPNVAVYTALIDGLCKKNCIERARNLFDEMPKR------DM-IPDTTAYTALIDGYLKHESFKEALNLKNRMTEV- 179 (257)
Q Consensus 110 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 179 (257)
+ .+....++..+...+...|++++|...+++..+. +. ......+..+...+...|++++|...++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 1234567888899999999999999999987654 11 223566788889999999999999999988764
Q ss_pred -----CCCc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 180 -----GVDL-DLNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 180 -----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
+..| ...++..+..++...|++++|...++++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2122 456788899999999999999999998886
No 89
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=2.2e-11 Score=93.80 Aligned_cols=201 Identities=10% Similarity=-0.014 Sum_probs=154.3
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcC--C----CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCcc-
Q 041259 10 LPLYGTIIWGLCIESKFEDSKLLLSEMKENG--L----TANTVICTTLMDAYFKAGEPSEALSLLDEMLDS----RIEV- 78 (257)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 78 (257)
..+|..+...+...|++++|...+.+..+.. . +....++..+..+|...|++++|+..+++..+. +..+
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 4578889999999999999999999887641 1 112457888899999999999999999988753 1111
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhcccC----CC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCC----CCCC
Q 041259 79 TVVTFCVLIDGLCKSGLVREAIDYFGRMPDF----GL-HPNVAVYTALIDGLCKKNCIERARNLFDEMPKRD----MIPD 149 (257)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~ 149 (257)
...++..+..+|...|++++|...+++..+. +. +....++..+...+...|++++|...+++..... -...
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 2347888999999999999999999988651 22 3346678889999999999999999999876431 1112
Q ss_pred HHHHHHHHHHHHcccC---HHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 150 TTAYTALIDGYLKHES---FKEALNLKNRMTEVGVDL-DLNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 150 ~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
...+..+...+...|+ +++|..++++. +..| ....+..+...|...|++++|...+++..+
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2345677888888998 67777776655 3333 345777889999999999999999998875
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.41 E-value=4.9e-12 Score=104.37 Aligned_cols=174 Identities=11% Similarity=-0.029 Sum_probs=144.4
Q ss_pred HhcCChhhHHHHHHHHH--------HcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh
Q 041259 21 CIESKFEDSKLLLSEMK--------ENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCK 92 (257)
Q Consensus 21 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 92 (257)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|+..|++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 43 25567888899999999999999999999998864 3367889999999999
Q ss_pred cCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHH
Q 041259 93 SGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNL 172 (257)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (257)
.|++++|...|++..+.. +.+...+..+..++...|++++ ...|++..+.+.. +...|..+..++...|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998764 4467788899999999999999 9999999887655 778899999999999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCc
Q 041259 173 KNRMTEVGVDLDLNAYTSLVWGLSRCGH 200 (257)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~li~~~~~~~~ 200 (257)
|++..+.... +...+..+..++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9998876432 46677777777766554
No 91
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.41 E-value=5.4e-10 Score=82.70 Aligned_cols=223 Identities=9% Similarity=-0.029 Sum_probs=177.3
Q ss_pred HhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCcccHHHHHHHHHHH----Hhc-
Q 041259 21 CIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAG--EPSEALSLLDEMLDSRIEVTVVTFCVLIDGL----CKS- 93 (257)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~- 93 (257)
.+....++|+++++.+...+ |-+...|+.--.++...+ ++++++++++.+.....+ +..+|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 33444568999999999875 455667888888888888 999999999999987533 566676655444 444
Q ss_pred --CcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHH--HHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccC----
Q 041259 94 --GLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIE--RARNLFDEMPKRDMIPDTTAYTALIDGYLKHES---- 165 (257)
Q Consensus 94 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 165 (257)
+++++++.+++.+.+.. +.+..+|+.-.-.+.+.|.++ ++++.++.+.+.++. |...|+.-.......+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 78999999999998765 567888888777778888888 999999999998877 88888887777777776
Q ss_pred --HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHH-HHHHHHHHHhCC--CCCcHHHHHHHHHHHHhcCCHHHHH
Q 041259 166 --FKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQE-ARVLFHEMIGRG--ILPDEILCISLLKKHYERGNMDEAI 240 (257)
Q Consensus 166 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 240 (257)
++++++.++.+....+. |...|+.+-..+.+.|+... +..+..++...+ -..+...+..+..++.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 89999999999988665 88999998888888887444 555666665432 1346778888999999999999999
Q ss_pred HHHHHHHh
Q 041259 241 ELQNEMMG 248 (257)
Q Consensus 241 ~~~~~m~~ 248 (257)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
No 92
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.39 E-value=9.6e-10 Score=86.50 Aligned_cols=188 Identities=14% Similarity=0.013 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc----CcHHHHHHHHHhcccCCCCCCHHHHH
Q 041259 47 ICTTLMDAYFKAG---EPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKS----GLVREAIDYFGRMPDFGLHPNVAVYT 119 (257)
Q Consensus 47 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (257)
.+..|...|...| +.++|++.|++..+.|. ++...+..+...|... +++++|..+|++.. . -+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 5566666666666 66677777776666652 2444444555555443 56667777776665 2 2334444
Q ss_pred HHHHH-H--HhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccc-----CHHHHHHHHHHHHHcCCCccHHHHHHH
Q 041259 120 ALIDG-L--CKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHE-----SFKEALNLKNRMTEVGVDLDLNAYTSL 191 (257)
Q Consensus 120 ~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (257)
.+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|...|++.. .| +...+..+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHH
Confidence 44444 2 34667777777777666654 4555555555555 34 6777777766665 32 44555555
Q ss_pred HHHHHh----cCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 041259 192 VWGLSR----CGHLQEARVLFHEMIGRGILPDEILCISLLKKHYE----RGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 192 i~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 250 (257)
...|.. ..++++|..+|++..+.|. ......|...|.. ..++++|..+|+...+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 555554 2366777777776666542 3333444444442 346666666666665554
No 93
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.39 E-value=2.6e-10 Score=80.41 Aligned_cols=175 Identities=12% Similarity=-0.011 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC----cHHHHHHHH
Q 041259 28 DSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSG----LVREAIDYF 103 (257)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~ 103 (257)
+|.+.|+...+.| +...+..+...|...+++++|+.+|++..+.| ++..+..+...|.. + ++++|.++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566666666643 45566666666666777777777777776654 44555566666665 4 667777777
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHc----ccCHHHHHHHHH
Q 041259 104 GRMPDFGLHPNVAVYTALIDGLCK----KNCIERARNLFDEMPKRDMI-PDTTAYTALIDGYLK----HESFKEALNLKN 174 (257)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 174 (257)
++..+.| +...+..|...|.. .+++++|...|++..+.+.. .+...+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 44455555555555 56666666666666665421 014555555555555 556666666666
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhc-C-----cHHHHHHHHHHHHhC
Q 041259 175 RMTEVGVDLDLNAYTSLVWGLSRC-G-----HLQEARVLFHEMIGR 214 (257)
Q Consensus 175 ~~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~~~~~ 214 (257)
+..+.+ .+...+..+...|... | ++++|..+++...+.
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 665541 1233444454444432 2 566666666655554
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.38 E-value=2.9e-10 Score=80.12 Aligned_cols=177 Identities=14% Similarity=0.016 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC----cHHHHHHHH
Q 041259 63 EALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKN----CIERARNLF 138 (257)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 138 (257)
+|+++|++..+.| ++.++..+...|...+++++|..+|++..+.| +...+..|...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777654 56677777777777888888888888877654 45566666666666 5 788888888
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHh----cCcHHHHHHHHH
Q 041259 139 DEMPKRDMIPDTTAYTALIDGYLK----HESFKEALNLKNRMTEVGVD-LDLNAYTSLVWGLSR----CGHLQEARVLFH 209 (257)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~ 209 (257)
+...+.+ +...+..+...|.. .+++++|...|++..+.+.. .++..+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8877654 56677777777766 77888888888887776532 125677777777777 677888888888
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 041259 210 EMIGRGILPDEILCISLLKKHYER-G-----NMDEAIELQNEMMGRGL 251 (257)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 251 (257)
+..+. ..+...+..|...|... | ++++|..+|++..+.|.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88775 22444566666666543 3 78888888887776653
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.37 E-value=8.6e-11 Score=86.86 Aligned_cols=165 Identities=15% Similarity=0.072 Sum_probs=98.0
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHH-HHH
Q 041259 79 TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYT-ALI 157 (257)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~ 157 (257)
+...+..+...+.+.|++++|...|++..... +.+...+..+...+...|++++|...++.+....+ +..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHHH
Confidence 44555556666666677777777666665543 33455666666666667777777777766655432 322222 222
Q ss_pred HHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHhcCCH
Q 041259 158 DGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGIL-PDEILCISLLKKHYERGNM 236 (257)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 236 (257)
..+...++.++|...+++..+..+ .+...+..+...+...|++++|...+.++.+.... .+...+..+...+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 234455566666666666666543 25666666677777777777777777776664211 1144566667777777777
Q ss_pred HHHHHHHHHHH
Q 041259 237 DEAIELQNEMM 247 (257)
Q Consensus 237 ~~a~~~~~~m~ 247 (257)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77766666543
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.36 E-value=6.1e-11 Score=81.06 Aligned_cols=162 Identities=14% Similarity=0.103 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HH
Q 041259 83 FCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDG-YL 161 (257)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 161 (257)
+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++......+ +...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 3344455556666666666666655432 33455566666666666666666666666555432 33222221111 11
Q ss_pred cccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHhcCCHHHHH
Q 041259 162 KHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILP-DEILCISLLKKHYERGNMDEAI 240 (257)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~ 240 (257)
..+....+...+++..+..+. +...+..+..++...|++++|...++++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 112222356666666665432 56677777777777777777777777777653221 2446666777777777777777
Q ss_pred HHHHHHHh
Q 041259 241 ELQNEMMG 248 (257)
Q Consensus 241 ~~~~~m~~ 248 (257)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776543
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.36 E-value=1.3e-11 Score=101.86 Aligned_cols=173 Identities=12% Similarity=-0.057 Sum_probs=145.1
Q ss_pred HhcCChHHHHHHHHHHH--------hcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 041259 56 FKAGEPSEALSLLDEML--------DSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK 127 (257)
Q Consensus 56 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (257)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...|++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 43 24467888899999999999999999999998764 4577889999999999
Q ss_pred cCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHH
Q 041259 128 KNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVL 207 (257)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 207 (257)
.|++++|...|++..+..+. +...+..+..++...|++++ .+.|++..+.+.. +...+..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887655 67889999999999999999 9999999987644 778899999999999999999999
Q ss_pred HHHHHhCCCCCc-HHHHHHHHHHHHhcCC
Q 041259 208 FHEMIGRGILPD-EILCISLLKKHYERGN 235 (257)
Q Consensus 208 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 235 (257)
+++..+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9988875 454 5567777777766554
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.35 E-value=8.7e-11 Score=86.26 Aligned_cols=185 Identities=13% Similarity=0.069 Sum_probs=115.1
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-cccHHHHHHHHHHHHhcCcHHHHHHHHHhcc
Q 041259 29 SKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRI-EVTVVTFCVLIDGLCKSGLVREAIDYFGRMP 107 (257)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 107 (257)
|...|+++...+ +++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555566555443 34555556777777777888888888877766543 2356677777778888888888888887776
Q ss_pred cCCCCC-----CHHHHHHHHHHH--HhcC--cHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 041259 108 DFGLHP-----NVAVYTALIDGL--CKKN--CIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 108 ~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
+. .| +..+...++.++ ...| ++.+|..+|+++.... |+..+-..++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 35 244444555442 2233 7778888888876542 3433333344467777888888887776554
Q ss_pred cC---------CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHH
Q 041259 179 VG---------VDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEIL 222 (257)
Q Consensus 179 ~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (257)
.. -+-++.+...+|......|+ +|.+++.++.+ ..|+...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~ 288 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAF 288 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChH
Confidence 21 02256666555555555665 67777777766 6666543
No 99
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=2.7e-10 Score=87.52 Aligned_cols=200 Identities=12% Similarity=0.060 Sum_probs=152.4
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcC--C---C-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCc-c
Q 041259 10 LPLYGTIIWGLCIESKFEDSKLLLSEMKENG--L---T-ANTVICTTLMDAYFKAGEPSEALSLLDEMLDS----RIE-V 78 (257)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~ 78 (257)
..++..+...+...|+++.|...+.+..+.. . . ....+++.+..+|...|++++|+..+++..+. +.+ .
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4567888899999999999999999887531 1 1 12457888999999999999999999988753 211 1
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhccc-----CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCC----CCC
Q 041259 79 TVVTFCVLIDGLCKSGLVREAIDYFGRMPD-----FGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDM----IPD 149 (257)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~ 149 (257)
...++..+..+|...|++++|...+++..+ .. +....++..+...+.+.|++++|...+++..+... ...
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 245778899999999999999999998865 32 33467788899999999999999999998765321 112
Q ss_pred HHHHHHHHHHHHcccC---HHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 150 TTAYTALIDGYLKHES---FKEALNLKNRMTEVGVDL-DLNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 150 ~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
...+..+...+...++ ..+|...++. .+..| ....+..+...|...|++++|...+++..+
T Consensus 300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 300 KELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455666667777888 6677776665 33222 345677889999999999999999998865
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.33 E-value=6.8e-10 Score=78.97 Aligned_cols=203 Identities=9% Similarity=-0.051 Sum_probs=118.1
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-c-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCccc--HHHHHH
Q 041259 10 LPLYGTIIWGLCIESKFEDSKLLLSEMKENGLT-A-NTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVT--VVTFCV 85 (257)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 85 (257)
...+..+...+.+.|++++|...|+.+.+.... + ....+..+..++.+.|++++|+..|+++.+...... ..++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667788888888888888888875311 1 135677778888888888888888888887532211 123444
Q ss_pred HHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccC
Q 041259 86 LIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHES 165 (257)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (257)
+..++...+.. .+ ..|..+...+...|++++|...|+.+.+..+. +...+.......
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----- 140 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----- 140 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH-----
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH-----
Confidence 44444433211 11 11222333445567888888888888776433 232322211100
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHhcCCHHHHHH
Q 041259 166 FKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD----EILCISLLKKHYERGNMDEAIE 241 (257)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~ 241 (257)
.+...+ ......+...+.+.|++++|...|+++++. .|+ ...+..+..++.+.|++++|.+
T Consensus 141 -----~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 141 -----FLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp -----HHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----HHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 000000 111234556777788888888888888765 222 2456777788888888888888
Q ss_pred HHHHHHhCC
Q 041259 242 LQNEMMGRG 250 (257)
Q Consensus 242 ~~~~m~~~~ 250 (257)
.++.+...+
T Consensus 206 ~~~~l~~~~ 214 (225)
T 2yhc_A 206 VAKIIAANS 214 (225)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhC
Confidence 888777654
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.33 E-value=2e-10 Score=84.85 Aligned_cols=169 Identities=12% Similarity=0.014 Sum_probs=139.8
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHH
Q 041259 41 LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTA 120 (257)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (257)
.+.+...+..+...+...|++++|+..|++..+.. +-+...+..+...+.+.|++++|...++++... .|+......
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 35666778888889999999999999999999874 336788999999999999999999999999876 355543333
Q ss_pred H-HHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhc
Q 041259 121 L-IDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDL-DLNAYTSLVWGLSRC 198 (257)
Q Consensus 121 l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 198 (257)
. ...+...++.++|...+++.....+. +...+..+...+...|++++|...++++.+..... +...+..++..+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2 33466777888899999998887655 78899999999999999999999999999875432 367899999999999
Q ss_pred CcHHHHHHHHHHHHh
Q 041259 199 GHLQEARVLFHEMIG 213 (257)
Q Consensus 199 ~~~~~a~~~~~~~~~ 213 (257)
|+.++|...+++...
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999998887653
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.33 E-value=1.4e-10 Score=93.93 Aligned_cols=154 Identities=12% Similarity=-0.004 Sum_probs=119.5
Q ss_pred cCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 041259 58 AGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNL 137 (257)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (257)
.|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988763 3367889999999999999999999999998764 45678899999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CcHHHHHHHHHHHHhC
Q 041259 138 FDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRC---GHLQEARVLFHEMIGR 214 (257)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~ 214 (257)
+++..+.... +...+..+..++...|++++|.+.+++..+.... +...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999887654 7889999999999999999999999999887543 678888999999999 9999999999999886
Q ss_pred C
Q 041259 215 G 215 (257)
Q Consensus 215 ~ 215 (257)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.32 E-value=1e-10 Score=94.77 Aligned_cols=155 Identities=12% Similarity=-0.013 Sum_probs=111.5
Q ss_pred cCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHH
Q 041259 23 ESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDY 102 (257)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (257)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|++.+++..+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467888888888887753 4457788888888889999999999999888764 33577888888889999999999999
Q ss_pred HHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc---cCHHHHHHHHHHHHHc
Q 041259 103 FGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKH---ESFKEALNLKNRMTEV 179 (257)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 179 (257)
+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 98887654 456778888888899999999999999888876544 677888888888888 8999999998888776
Q ss_pred CC
Q 041259 180 GV 181 (257)
Q Consensus 180 ~~ 181 (257)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 104
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.32 E-value=5.3e-10 Score=87.94 Aligned_cols=160 Identities=11% Similarity=0.027 Sum_probs=121.5
Q ss_pred cHHHHHHHHHHHHhcC---cHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc----CcHHHHHHHHHHhhhCCCCCCHH
Q 041259 79 TVVTFCVLIDGLCKSG---LVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKK----NCIERARNLFDEMPKRDMIPDTT 151 (257)
Q Consensus 79 ~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~ 151 (257)
++..+..+...|...| +.++|++.|++..+.| +++...+..+...|... +++++|...|+... .| +..
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~ 249 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPA 249 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHH
Confidence 3447778888888888 8899999999988877 56666656677777554 68999999999887 33 555
Q ss_pred HHHHHHHH-H--HcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhCCCCCcHHHH
Q 041259 152 AYTALIDG-Y--LKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCG-----HLQEARVLFHEMIGRGILPDEILC 223 (257)
Q Consensus 152 ~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~ 223 (257)
.+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|..+|++.. .| +...+
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~ 321 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAAD 321 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHH
Confidence 66666666 3 45889999999999988876 5667777777776 45 8999999998877 33 56666
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 041259 224 ISLLKKHYE----RGNMDEAIELQNEMMGRGL 251 (257)
Q Consensus 224 ~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 251 (257)
..|...|.. ..++++|.++|++..+.|.
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 767776665 3489999999998887664
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.32 E-value=5e-11 Score=81.49 Aligned_cols=161 Identities=13% Similarity=0.070 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHH-HH
Q 041259 48 CTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDG-LC 126 (257)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 126 (257)
+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3444555666777777777776665542 2245666666777777777777777777765542 333322222111 11
Q ss_pred hcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCcHHHHH
Q 041259 127 KKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDL-DLNAYTSLVWGLSRCGHLQEAR 205 (257)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~ 205 (257)
..+...+|...+++..+..+. +...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 112223356667666665443 56677777777777777777777777777654332 2456677777777777777777
Q ss_pred HHHHHHH
Q 041259 206 VLFHEMI 212 (257)
Q Consensus 206 ~~~~~~~ 212 (257)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.32 E-value=9.1e-10 Score=78.32 Aligned_cols=167 Identities=9% Similarity=-0.002 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANT---VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLI 87 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (257)
..+..+..++.+.|++++|...|+.+.+.. |-+. ..+..+..++...+.. .+ ..|..+.
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~~~~~~-----~~------------~~~~~~~ 103 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNMALDDS-----AL------------QGFFGVD 103 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHHhhhhh-----hh------------hhhhccc
Confidence 467778899999999999999999998864 2122 2444455555443211 11 1122233
Q ss_pred HHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHH
Q 041259 88 DGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFK 167 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (257)
..+...|++++|...|+++.+.. +-+...+.+...... +...+ ......+...+...|+++
T Consensus 104 ~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~----------~~~~~--------~~~~~~~a~~~~~~~~~~ 164 (225)
T 2yhc_A 104 RSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVF----------LKDRL--------AKYEYSVAEYYTERGAWV 164 (225)
T ss_dssp ----CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHH----------HHHHH--------HHHHHHHHHHHHHHTCHH
T ss_pred hhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHH----------HHHHH--------HHHHHHHHHHHHHcCcHH
Confidence 34455677788888887776642 222222222111000 00000 001224556677788888
Q ss_pred HHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 168 EALNLKNRMTEVGVDL--DLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 168 ~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
+|...|+.+.+..+.. ....+..+..++.+.|++++|.+.++.+...
T Consensus 165 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 165 AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 8888888877754321 1256777778888888888888888877765
No 107
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.31 E-value=2e-09 Score=92.68 Aligned_cols=207 Identities=13% Similarity=0.090 Sum_probs=159.7
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHH
Q 041259 8 ADLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLI 87 (257)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 87 (257)
-|...|.-++..+.+.|++++|.+.+...++.. ++....+.++.+|++.+++++...+ .+ .++...|..+.
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVG 1202 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHH
Confidence 366778889999999999999999999888764 3433444589999999998864433 22 34566777899
Q ss_pred HHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHH
Q 041259 88 DGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFK 167 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (257)
..|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..+|...|++.
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHH
Confidence 9999999999999999985 378999999999999999999998872 6689999999999999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh--cCCHHHHHHHHH
Q 041259 168 EALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYE--RGNMDEAIELQN 244 (257)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~ 244 (257)
.|...... +..++..+..++..|.+.|.+++|+.+++..+... +-....|+.+...+.+ -++..++.+.|.
T Consensus 1268 LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1268 LAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 98886554 33366778899999999999999999998877543 2234455555555553 234444444443
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.31 E-value=1.4e-11 Score=82.01 Aligned_cols=82 Identities=12% Similarity=-0.027 Sum_probs=35.7
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 041259 120 ALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCG 199 (257)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 199 (257)
.+...|.+.|++++|.+.|++..+.++. +..+|..+..++...|++++|...|++..+..+. +..++..+...+.+.|
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 3444444444444444444444443322 3444444444444444444444444444443221 3344444444444444
Q ss_pred cHHH
Q 041259 200 HLQE 203 (257)
Q Consensus 200 ~~~~ 203 (257)
++++
T Consensus 114 ~~~~ 117 (150)
T 4ga2_A 114 VTDG 117 (150)
T ss_dssp SSSS
T ss_pred ChHH
Confidence 4433
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.31 E-value=2.4e-11 Score=80.79 Aligned_cols=146 Identities=8% Similarity=-0.066 Sum_probs=115.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCc
Q 041259 51 LMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNC 130 (257)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (257)
|...+...|++++|+..++...... +-+...+..+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 3445556788999999999887652 2245567788999999999999999999998764 5578899999999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHH-HHHHHHHcCCCccHHHHHHHHHHHHhcCc
Q 041259 131 IERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALN-LKNRMTEVGVDLDLNAYTSLVWGLSRCGH 200 (257)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 200 (257)
+++|...|+...+.++. +...+..+...+...|+++++.. ++++..+..+. ++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 99999999999887655 78899999999999999877655 45888776543 67778777777766664
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.27 E-value=5.4e-10 Score=83.38 Aligned_cols=216 Identities=10% Similarity=-0.005 Sum_probs=141.3
Q ss_pred cCChhhHHHHHHHHHHc------CCCccH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCcc-cHHHHHHHH
Q 041259 23 ESKFEDSKLLLSEMKEN------GLTANT----VICTTLMDAYFKAGEPSEALSLLDEMLDS----RIEV-TVVTFCVLI 87 (257)
Q Consensus 23 ~~~~~~a~~~~~~~~~~------~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll 87 (257)
.|++++|.+++++..+. +..++. ..|......|...|++++|...|.+..+. +..+ -..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777777766542 112222 25666677788889999999888877643 1111 245777888
Q ss_pred HHHHhcCcHHHHHHHHHhcccC----CCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCC-----CHHHHHHHH
Q 041259 88 DGLCKSGLVREAIDYFGRMPDF----GLHP-NVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIP-----DTTAYTALI 157 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~ 157 (257)
..|...|++++|...|++..+. |-.. ...++..+...|.. |++++|+..|++........ ...++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8888889998888888876432 2111 13567777788877 99999999888865431110 145677888
Q ss_pred HHHHcccCHHHHHHHHHHHHHc----CCCcc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC--CCc--HHHHHHHHH
Q 041259 158 DGYLKHESFKEALNLKNRMTEV----GVDLD-LNAYTSLVWGLSRCGHLQEARVLFHEMIGRGI--LPD--EILCISLLK 228 (257)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~~l~~ 228 (257)
..+...|++++|...|++..+. +..+. ...+..+..++...|++++|...|++.. ... ... ......++.
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~ 241 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQ 241 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHH
Confidence 8889999999999998887753 21112 2356666777778899999999999887 411 111 123444555
Q ss_pred HHHhcCCHHHHHH
Q 041259 229 KHYERGNMDEAIE 241 (257)
Q Consensus 229 ~~~~~g~~~~a~~ 241 (257)
++ ..|+.+.+.+
T Consensus 242 ~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 242 AY-DEQDEEQLLR 253 (307)
T ss_dssp HH-HTTCHHHHHH
T ss_pred HH-HhcCHHHHHH
Confidence 44 5677666555
No 111
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.26 E-value=1.5e-08 Score=75.98 Aligned_cols=232 Identities=12% Similarity=0.021 Sum_probs=171.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 041259 13 YGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAG-EPSEALSLLDEMLDSRIEVTVVTFCVLIDGLC 91 (257)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (257)
++.+-....+.+..++|+++++.+...+ +-+..+|+.--.++...+ .+++++++++.+.....+ +..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 3444444455566678999999999875 456677888777777788 599999999999987544 7788888777777
Q ss_pred hc-C-cHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHH--------HHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 041259 92 KS-G-LVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIE--------RARNLFDEMPKRDMIPDTTAYTALIDGYL 161 (257)
Q Consensus 92 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (257)
.. + ++++++++++.+.+.. +.+..+|+.-.-.+.+.+.++ ++++.++++.+.++. |...|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 66 6 8899999999998765 567777776555555555555 899999999988776 8889988888887
Q ss_pred cccC-------HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcH--------------------HHHHHHHHHHHhC
Q 041259 162 KHES-------FKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHL--------------------QEARVLFHEMIGR 214 (257)
Q Consensus 162 ~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--------------------~~a~~~~~~~~~~ 214 (257)
+.+. ++++++.+++.....+. |...|+.+-..+.+.|+. .........+...
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred hccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 7775 78899999998887654 888888877777766653 2333333333322
Q ss_pred C-----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 215 G-----ILPDEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 215 ~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
+ -.++...+..++..|...|+.++|.++++.+.+.
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1 1356778888999999999999999999998643
No 112
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.24 E-value=7.1e-09 Score=84.93 Aligned_cols=237 Identities=10% Similarity=0.018 Sum_probs=177.2
Q ss_pred hhHHHHHHHHHhcC-------ChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHH-HHHHHHHhcCCcccHHH
Q 041259 11 PLYGTIIWGLCIES-------KFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEAL-SLLDEMLDSRIEVTVVT 82 (257)
Q Consensus 11 ~~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~ 82 (257)
..|...+..--..+ ..+++..+|+++... .+.....|...+..+...|+.++|. .+|++.... .+.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 45666665443332 123456788888876 4668889999999889999999997 999999875 4556677
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhcccCCC---------CCC------------HHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 041259 83 FCVLIDGLCKSGLVREAIDYFGRMPDFGL---------HPN------------VAVYTALIDGLCKKNCIERARNLFDEM 141 (257)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 141 (257)
|...+....+.|+++.|.++|+.+..... .|+ ..+|...+....+.|+.+.|..+|...
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888889999999999999999875310 132 336788888888899999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC--
Q 041259 142 PKRDMIPDTTAYTALIDGYLKH-ESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILP-- 218 (257)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-- 218 (257)
.+....+....|...+..-.+. ++.+.|..+|+...+. .+-+...+...+......|+.+.|..+|++.......+
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 8761112334454444333343 5589999999998886 33466777888888888999999999999999863321
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 219 DEILCISLLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
....|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34578888888888999999999999998643
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.20 E-value=7.1e-09 Score=72.82 Aligned_cols=126 Identities=12% Similarity=-0.103 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 041259 48 CTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK 127 (257)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (257)
+..+...+...|++++|+..|++.. .|+..++..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555556666666666665552 3355566666666666666666666666655443 3345555556666666
Q ss_pred cCcHHHHHHHHHHhhhCCCCCCH----------------HHHHHHHHHHHcccCHHHHHHHHHHHHHc
Q 041259 128 KNCIERARNLFDEMPKRDMIPDT----------------TAYTALIDGYLKHESFKEALNLKNRMTEV 179 (257)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (257)
.|++++|...|+...+.... +. ..+..+..++...|++++|...++...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666665554322 11 44555555555556666666655555554
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.19 E-value=3.8e-09 Score=74.25 Aligned_cols=129 Identities=11% Similarity=-0.041 Sum_probs=93.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLC 91 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (257)
.+..+...+...|++++|.+.|++.. .|+...+..+..++...|++++|+..+++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34456666777888888888877663 4577777888888888888888888888877653 335677777888888
Q ss_pred hcCcHHHHHHHHHhcccCCCCCC----------------HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCC
Q 041259 92 KSGLVREAIDYFGRMPDFGLHPN----------------VAVYTALIDGLCKKNCIERARNLFDEMPKRDM 146 (257)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (257)
..|++++|...|++..+.. +.+ ...+..+..++...|++++|...|+...+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 8888888888888776543 222 25667777788888888888888888776543
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.18 E-value=3.3e-08 Score=73.20 Aligned_cols=166 Identities=13% Similarity=0.014 Sum_probs=121.4
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhcccCCC-CCCH----HHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC-CC----HHH
Q 041259 83 FCVLIDGLCKSGLVREAIDYFGRMPDFGL-HPNV----AVYTALIDGLCKKNCIERARNLFDEMPKRDMI-PD----TTA 152 (257)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 152 (257)
+...+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...++........ ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 33446778889999999999998765321 2221 13334666777788999999999998764222 22 236
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHH----c-CCCc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCc-HH
Q 041259 153 YTALIDGYLKHESFKEALNLKNRMTE----V-GVDL-DLNAYTSLVWGLSRCGHLQEARVLFHEMIGR----GILPD-EI 221 (257)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~ 221 (257)
++.+..+|...|++++|...++++.+ . +..+ ...++..+...|...|++++|...+++..+. +..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 88899999999999999999998874 1 2222 2347888999999999999999999888753 22222 56
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 041259 222 LCISLLKKHYERGN-MDEAIELQNEMMG 248 (257)
Q Consensus 222 ~~~~l~~~~~~~g~-~~~a~~~~~~m~~ 248 (257)
.|..+..++.+.|+ +++|.+.+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 78888899999994 6999999888764
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.15 E-value=2.5e-09 Score=79.76 Aligned_cols=193 Identities=8% Similarity=-0.055 Sum_probs=139.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc----CCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCcc-cHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKEN----GLT-ANTVICTTLMDAYFKAGEPSEALSLLDEMLDS----RIEV-TVV 81 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 81 (257)
.|+.....|...|++++|.+.|.+..+. +-+ .-..+|..+..+|...|++++|+..|++..+. |-.. ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6778888899999999999999987653 111 11457888899999999999999999987643 2111 246
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhcccCC----CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCC----CCCC-HH
Q 041259 82 TFCVLIDGLCKSGLVREAIDYFGRMPDFG----LHP-NVAVYTALIDGLCKKNCIERARNLFDEMPKRD----MIPD-TT 151 (257)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~ 151 (257)
++..+...|.. |++++|+..|++..+.. -.+ ...++..+...+...|++++|+..|++..... ..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 78888899988 99999999999876431 111 14578888999999999999999999876531 1111 23
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHcCCCc----cHHHHHHHHHHHHhcCcHHHHHHH
Q 041259 152 AYTALIDGYLKHESFKEALNLKNRMTEVGVDL----DLNAYTSLVWGLSRCGHLQEARVL 207 (257)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~ 207 (257)
.+..+..++...|++++|...|++.. ..... .......++.++ ..|+.+.+..+
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 56667777888899999999999988 43211 122344555555 56777666553
No 117
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.14 E-value=1.4e-08 Score=83.30 Aligned_cols=216 Identities=12% Similarity=0.066 Sum_probs=164.4
Q ss_pred ChhhHHHHHHHHHhcCChhhHH-HHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---------cc
Q 041259 9 DLPLYGTIIWGLCIESKFEDSK-LLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRI---------EV 78 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~ 78 (257)
+...|-..+..+.+.|+.++|. ++|++.... .|.+...|...+...-+.|+++.|.++|+++..... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 4566777777788889999997 999999875 466777788888889999999999999999886410 12
Q ss_pred ------------cHHHHHHHHHHHHhcCcHHHHHHHHHhcccC-CCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHhhhC
Q 041259 79 ------------TVVTFCVLIDGLCKSGLVREAIDYFGRMPDF-GLHPNVAVYTALIDGLCKK-NCIERARNLFDEMPKR 144 (257)
Q Consensus 79 ------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 144 (257)
...+|...+....+.|+.+.|.++|.+..+. + ......|...+..-.+. ++.+.|.++|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2346888888888899999999999999765 2 22334444443333444 4589999999998887
Q ss_pred CCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC--ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHH
Q 041259 145 DMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVD--LDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEIL 222 (257)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (257)
-. -+...+...+......|+.+.|..+|+........ -....|...+..-.+.|+.+.+.++.+++.+. .|+...
T Consensus 500 ~p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~ 576 (679)
T 4e6h_A 500 FA-TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNK 576 (679)
T ss_dssp HT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCH
T ss_pred CC-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcH
Confidence 33 36677778888888899999999999999886542 24578888999889999999999999999986 344444
Q ss_pred HHHHHHH
Q 041259 223 CISLLKK 229 (257)
Q Consensus 223 ~~~l~~~ 229 (257)
...++.-
T Consensus 577 ~~~f~~r 583 (679)
T 4e6h_A 577 LEEFTNK 583 (679)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4434433
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.12 E-value=4.2e-08 Score=72.60 Aligned_cols=168 Identities=10% Similarity=-0.050 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCC---CCC--
Q 041259 80 VVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPN-----VAVYTALIDGLCKKNCIERARNLFDEMPKRDM---IPD-- 149 (257)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-- 149 (257)
...+...+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|...++....... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555667778888999999988887655421111 12233455667778899999999888764321 112
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHH---cC-CCc--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCC-
Q 041259 150 TTAYTALIDGYLKHESFKEALNLKNRMTE---VG-VDL--DLNAYTSLVWGLSRCGHLQEARVLFHEMIGR----GILP- 218 (257)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~- 218 (257)
..+++.+...|...|++++|...+++..+ .. ..+ ...++..+...|...|++++|...+++..+. +...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45788888899999999999999988763 21 111 2257888888999999999999999887653 1111
Q ss_pred cHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 041259 219 DEILCISLLKKHYERGNMDEA-IELQNEMM 247 (257)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 247 (257)
-..+|..+..+|.+.|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 156778888889999999999 77677654
No 119
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.12 E-value=4.2e-08 Score=71.22 Aligned_cols=195 Identities=11% Similarity=-0.037 Sum_probs=138.5
Q ss_pred hcCChhhHHHHHHHHHHcCCCccHHHHHHH-------HHHHHhcCChHHHHHHHHHHHhcCCccc---------------
Q 041259 22 IESKFEDSKLLLSEMKENGLTANTVICTTL-------MDAYFKAGEPSEALSLLDEMLDSRIEVT--------------- 79 (257)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 79 (257)
..++...|.+.|.++.+.. |-....|..+ ...+.+.++..+++..++.-.+. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 5899999999999998875 4566778777 45566666666666666555441 221
Q ss_pred -------HHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCC--H
Q 041259 80 -------VVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPD--T 150 (257)
Q Consensus 80 -------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 150 (257)
....-.+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233456677888899999999999888754 544355566668888999999999998665532 111 2
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHH
Q 041259 151 TAYTALIDGYLKHESFKEALNLKNRMTEVGVDL--DLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCI 224 (257)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (257)
..+..+..++...|++++|+..|++.......| ..........++.+.|+.++|...|+++... .|+...+.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~ 245 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHH
Confidence 367777888899999999999999887543324 3446667778888999999999999999885 45533333
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.11 E-value=6.9e-09 Score=69.69 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=36.0
Q ss_pred HHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccC
Q 041259 86 LIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHES 165 (257)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (257)
+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++........ +...+..+..++...|+
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 96 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcc
Confidence 3333334444444444444333321 123333334444444444444444444443333221 33334444444444444
Q ss_pred HHHHHHHHHHHHH
Q 041259 166 FKEALNLKNRMTE 178 (257)
Q Consensus 166 ~~~a~~~~~~~~~ 178 (257)
+++|...+++..+
T Consensus 97 ~~~A~~~~~~a~~ 109 (166)
T 1a17_A 97 FRAALRDYETVVK 109 (166)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.11 E-value=9.3e-10 Score=81.03 Aligned_cols=94 Identities=17% Similarity=0.095 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGL 90 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (257)
..+..+...+.+.|++++|...|+...+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334444444444555555555555444432 2234444444444444455555555544444432 12334444444444
Q ss_pred HhcCcHHHHHHHHHhc
Q 041259 91 CKSGLVREAIDYFGRM 106 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~ 106 (257)
...|++++|...|++.
T Consensus 83 ~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 83 LEMESYDEAIANLQRA 98 (281)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 4444444444444444
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.11 E-value=1e-08 Score=68.89 Aligned_cols=131 Identities=14% Similarity=0.093 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 041259 115 VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWG 194 (257)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 194 (257)
...+..+...+...|++++|...|+........ +..++..+..++...|++++|...+++..+... .+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 345677788899999999999999998887544 788899999999999999999999999988753 367889999999
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCcHHHH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 195 LSRCGHLQEARVLFHEMIGRGILPDEILC--ISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
+...|++++|...+++..+.. +.+...+ ......+...|++++|.+.+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999998753 2234444 3344447788999999999987653
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.11 E-value=1.7e-08 Score=74.76 Aligned_cols=164 Identities=12% Similarity=0.017 Sum_probs=123.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC-cccH----HHHHHHHHHHHhcCcHHHHHHHHHhcccCCCC-CC----HHHHH
Q 041259 50 TLMDAYFKAGEPSEALSLLDEMLDSRI-EVTV----VTFCVLIDGLCKSGLVREAIDYFGRMPDFGLH-PN----VAVYT 119 (257)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 119 (257)
..+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...+++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778899999999999999987432 2332 23345777778888999999999998763211 22 34688
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhh----C-CCCC-CHHHHHHHHHHHHcccCHHHHHHHHHHHHHc----CCC-ccHHHH
Q 041259 120 ALIDGLCKKNCIERARNLFDEMPK----R-DMIP-DTTAYTALIDGYLKHESFKEALNLKNRMTEV----GVD-LDLNAY 188 (257)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 188 (257)
.+...|...|++++|...++.+.+ . +..+ ...++..+...|...|++++|...+++..+. +.. .-..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999998873 1 1111 2347888999999999999999999987653 111 126788
Q ss_pred HHHHHHHHhcCc-HHHHHHHHHHHHh
Q 041259 189 TSLVWGLSRCGH-LQEARVLFHEMIG 213 (257)
Q Consensus 189 ~~li~~~~~~~~-~~~a~~~~~~~~~ 213 (257)
..+..++...|+ +++|...+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999988764
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.09 E-value=7e-09 Score=66.59 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 041259 48 CTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK 127 (257)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (257)
+......+.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444332 1233444444444444444444444444443332 2233344444444444
Q ss_pred cCcHHHHHHHHHHhhh
Q 041259 128 KNCIERARNLFDEMPK 143 (257)
Q Consensus 128 ~~~~~~a~~~~~~~~~ 143 (257)
.|++++|.+.|+...+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444443
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.09 E-value=4.8e-09 Score=67.34 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 041259 117 VYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLS 196 (257)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 196 (257)
.+......|.+.|++++|+..|++..+.++. +...|..+..++...|++++|...+++..+.... +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 3344444455555555555555554444332 4444455555555555555555555554444322 3444555555555
Q ss_pred hcCcHHHHHHHHHHHHh
Q 041259 197 RCGHLQEARVLFHEMIG 213 (257)
Q Consensus 197 ~~~~~~~a~~~~~~~~~ 213 (257)
..|++++|...|++.++
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 55555555555555544
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.08 E-value=3.5e-09 Score=73.74 Aligned_cols=158 Identities=14% Similarity=-0.043 Sum_probs=102.7
Q ss_pred HhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhccc----CCCC-CCHHHHHHHHHHHHhcCc
Q 041259 56 FKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPD----FGLH-PNVAVYTALIDGLCKKNC 130 (257)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~ 130 (257)
...|++++|.+.++.+... ......++..+...+...|++++|...+++... .+.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4568888888865555432 223567778888888888888888888887754 1111 234566677778888888
Q ss_pred HHHHHHHHHHhhhC----CCCC--CHHHHHHHHHHHHcccCHHHHHHHHHHHHHc----CCC-ccHHHHHHHHHHHHhcC
Q 041259 131 IERARNLFDEMPKR----DMIP--DTTAYTALIDGYLKHESFKEALNLKNRMTEV----GVD-LDLNAYTSLVWGLSRCG 199 (257)
Q Consensus 131 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~ 199 (257)
+++|...+++.... +..| ....+..+...+...|++++|...+++..+. +.. .-..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888776542 1111 2345667777788888888888888776542 111 11234566777777888
Q ss_pred cHHHHHHHHHHHHhC
Q 041259 200 HLQEARVLFHEMIGR 214 (257)
Q Consensus 200 ~~~~a~~~~~~~~~~ 214 (257)
++++|...+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888887777664
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.08 E-value=5.1e-08 Score=72.13 Aligned_cols=168 Identities=10% Similarity=-0.014 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCccc-----HHHHHHHHHHHHhcCcHHHHHHHHHhcccCC---CCCC--H
Q 041259 46 VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVT-----VVTFCVLIDGLCKSGLVREAIDYFGRMPDFG---LHPN--V 115 (257)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~ 115 (257)
..+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|...+++..... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445667788899999999999998876532211 1234456667788899999999998875422 1122 4
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhh---hCCCC-C--CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCC-----Ccc
Q 041259 116 AVYTALIDGLCKKNCIERARNLFDEMP---KRDMI-P--DTTAYTALIDGYLKHESFKEALNLKNRMTEVGV-----DLD 184 (257)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~ 184 (257)
.+++.+...|...|++++|...+++.. +.... + ...++..+...|...|++++|...+++..+... ..-
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 588899999999999999999999876 22111 1 125888999999999999999999998775421 112
Q ss_pred HHHHHHHHHHHHhcCcHHHH-HHHHHHHHh
Q 041259 185 LNAYTSLVWGLSRCGHLQEA-RVLFHEMIG 213 (257)
Q Consensus 185 ~~~~~~li~~~~~~~~~~~a-~~~~~~~~~ 213 (257)
..+|..+..++...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67888999999999999999 777777654
No 128
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=1.2e-07 Score=70.23 Aligned_cols=201 Identities=11% Similarity=0.027 Sum_probs=158.9
Q ss_pred hhhHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCccHHHHHHHHHHH----Hhc---CChHHHHHHHHHHHhcCCcccH
Q 041259 10 LPLYGTIIWGLCIES--KFEDSKLLLSEMKENGLTANTVICTTLMDAY----FKA---GEPSEALSLLDEMLDSRIEVTV 80 (257)
Q Consensus 10 ~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~ 80 (257)
...|+.--..+...+ ++++++++++.+...+ |-+..+|+.--..+ ... +++++++.+++++.+... -+.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-kny 144 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP-KNH 144 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-TCH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-CCH
Confidence 345777777777778 9999999999999875 45666676555544 455 789999999999998753 378
Q ss_pred HHHHHHHHHHHhcCcHH--HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCc------HHHHHHHHHHhhhCCCCCCHHH
Q 041259 81 VTFCVLIDGLCKSGLVR--EAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNC------IERARNLFDEMPKRDMIPDTTA 152 (257)
Q Consensus 81 ~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~ 152 (257)
.+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.-...+...+. ++++++.++.+...++. |...
T Consensus 145 ~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~Sa 222 (306)
T 3dra_A 145 HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPST 222 (306)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHH
T ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccH
Confidence 88888888888888888 9999999998775 5677888877777777776 89999999999988776 8899
Q ss_pred HHHHHHHHHcccCHH-HHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 153 YTALIDGYLKHESFK-EALNLKNRMTEVG--VDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 153 ~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
|+.+-..+.+.|+.. .+..+..++.+.+ -..+...+..+...+.+.|+.++|.++++.+.+.
T Consensus 223 W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 223 WNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 988888887777643 3555666665543 1347788999999999999999999999999864
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.07 E-value=1.4e-09 Score=80.16 Aligned_cols=196 Identities=10% Similarity=-0.018 Sum_probs=133.0
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHH
Q 041259 43 ANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALI 122 (257)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (257)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356778888899999999999999999998864 3378889999999999999999999999998764 45678889999
Q ss_pred HHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHH
Q 041259 123 DGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQ 202 (257)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (257)
.++...|++++|...|+...+.++. +...+...+....+.. .... +........+.+......+.. + ..|+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 9999999999999999987664321 1111111111111111 1111 122222333334444443333 2 368899
Q ss_pred HHHHHHHHHHhCCCCCcHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 041259 203 EARVLFHEMIGRGILPDEI-LCISLLKKHYER-GNMDEAIELQNEMMGR 249 (257)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 249 (257)
+|.+.++...+. .|+.. ....+...+.+. +.+++|.++|.+..+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999988887764 44443 333344444444 6788899999887653
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.06 E-value=1.4e-08 Score=64.54 Aligned_cols=96 Identities=18% Similarity=0.253 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGL 90 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (257)
..|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 445555555556666666666666555542 3344555555555555566666666655555432 22344555555555
Q ss_pred HhcCcHHHHHHHHHhccc
Q 041259 91 CKSGLVREAIDYFGRMPD 108 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~ 108 (257)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555544
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.06 E-value=1.4e-08 Score=64.48 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=9.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH
Q 041259 188 YTSLVWGLSRCGHLQEARVLFHEMI 212 (257)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~ 212 (257)
+..+...+...|++++|...++++.
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333333333444444444443333
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.05 E-value=8.1e-09 Score=71.85 Aligned_cols=158 Identities=11% Similarity=-0.050 Sum_probs=112.5
Q ss_pred HhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCc-ccHHHHHHHHHHHHhcCc
Q 041259 21 CIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS----RIE-VTVVTFCVLIDGLCKSGL 95 (257)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~ 95 (257)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4678999999966555442 2345678888888999999999999999888752 222 235677888889999999
Q ss_pred HHHHHHHHHhcccC----CCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCC---CCCC--HHHHHHHHHHHHccc
Q 041259 96 VREAIDYFGRMPDF----GLHP--NVAVYTALIDGLCKKNCIERARNLFDEMPKRD---MIPD--TTAYTALIDGYLKHE 164 (257)
Q Consensus 96 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~ 164 (257)
+++|...+++..+. +-.+ ....+..+...+...|++++|...+++..... ..+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999887542 2111 23457778888899999999999998875321 1111 234577788888999
Q ss_pred CHHHHHHHHHHHHHc
Q 041259 165 SFKEALNLKNRMTEV 179 (257)
Q Consensus 165 ~~~~a~~~~~~~~~~ 179 (257)
++++|...+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988887664
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.04 E-value=2e-08 Score=64.67 Aligned_cols=118 Identities=14% Similarity=0.056 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 041259 114 NVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVW 193 (257)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 193 (257)
+...+..+...+...|++++|...++........ +...+..+...+...|++++|...+++..+... .+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 4455666666666667777777666666655433 556666666666677777777777776666532 25566666666
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 041259 194 GLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERG 234 (257)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (257)
++...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 7777777777777777666542 112344444555554443
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.04 E-value=2.3e-08 Score=72.57 Aligned_cols=190 Identities=12% Similarity=0.013 Sum_probs=138.7
Q ss_pred hcCChHHHHHHHHHHHhcCCcccHHHHHHH-------HHHHHhcCcHHHHHHHHHhccc------------CCCC-----
Q 041259 57 KAGEPSEALSLLDEMLDSRIEVTVVTFCVL-------IDGLCKSGLVREAIDYFGRMPD------------FGLH----- 112 (257)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~------------~~~~----- 112 (257)
..++...|.+.|.+...... -....|..+ ...+.+.+...+++..+..-.. .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 57999999999999998743 356778777 4555555555555555544433 2210
Q ss_pred ---CCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCcc--HHH
Q 041259 113 ---PNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLD--LNA 187 (257)
Q Consensus 113 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 187 (257)
.-......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 012344567788899999999999999998765 333366666678899999999999998655432 221 347
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041259 188 YTSLVWGLSRCGHLQEARVLFHEMIGRGILPD--EILCISLLKKHYERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 250 (257)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 78889999999999999999999985433253 3456668888999999999999999998643
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.04 E-value=1.2e-08 Score=65.68 Aligned_cols=97 Identities=9% Similarity=0.046 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 041259 81 VTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGY 160 (257)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (257)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 344444444444444444444444443322 223344444444444444455554444444443222 344444444555
Q ss_pred HcccCHHHHHHHHHHHHHc
Q 041259 161 LKHESFKEALNLKNRMTEV 179 (257)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~ 179 (257)
...|++++|...+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 5555555555555554443
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.03 E-value=1.1e-08 Score=65.69 Aligned_cols=115 Identities=13% Similarity=0.083 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 041259 118 YTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSR 197 (257)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 197 (257)
+..+...+...|++++|...++........ +...+..+...+...|++++|...++...+... .+...+..+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHHHH
Confidence 333444444444444444444444333221 333444444444444444444444444444321 133344444444444
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 041259 198 CGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGN 235 (257)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (257)
.|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 444444444444444331 1123334444444444433
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.02 E-value=1.7e-08 Score=64.63 Aligned_cols=121 Identities=12% Similarity=0.044 Sum_probs=101.3
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 041259 78 VTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALI 157 (257)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (257)
.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++........ +...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHH
Confidence 356778888999999999999999999987654 457788889999999999999999999998876544 678889999
Q ss_pred HHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcH
Q 041259 158 DGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHL 201 (257)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 201 (257)
..+...|++++|...+++..+.... +...+..+..++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 9999999999999999999887533 667777777777776654
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.02 E-value=2.6e-09 Score=70.81 Aligned_cols=99 Identities=18% Similarity=0.117 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 041259 114 NVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVW 193 (257)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 193 (257)
+...+..+...+.+.|++++|...|+.....++. +...|..+..++...|++++|...|++..+..+. ++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 3445666667777777777777777777766544 6677777777777777777777777777776433 5566777777
Q ss_pred HHHhcCcHHHHHHHHHHHHhC
Q 041259 194 GLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~ 214 (257)
++...|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777764
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.02 E-value=1e-08 Score=67.87 Aligned_cols=100 Identities=14% Similarity=0.024 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 041259 79 TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALID 158 (257)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (257)
+...+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...|++..+..+. +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 44566667777777777777777777776654 446667777777777778888887777777766544 5667777777
Q ss_pred HHHcccCHHHHHHHHHHHHHcC
Q 041259 159 GYLKHESFKEALNLKNRMTEVG 180 (257)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~ 180 (257)
+|...|++++|...|++..+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 7777788888888777777754
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.01 E-value=1.7e-08 Score=76.21 Aligned_cols=124 Identities=16% Similarity=0.050 Sum_probs=63.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCccc--------------HHHHHHHHHHHHhcCcHHHHHHHHHhcccC
Q 041259 44 NTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVT--------------VVTFCVLIDGLCKSGLVREAIDYFGRMPDF 109 (257)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (257)
+...+..+...+.+.|++++|+..|++..+...... ..+|..+..++.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344566666666677777777777776665432211 244444555555555555555555554443
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHH
Q 041259 110 GLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEA 169 (257)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (257)
. +.+...+..+..+|...|++++|...|++..+..+. +...+..+..++...|+.+++
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 2 233444444455555555555555555554444322 344444444444444444444
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.00 E-value=8.4e-09 Score=68.22 Aligned_cols=96 Identities=14% Similarity=0.038 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 041259 116 AVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGL 195 (257)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 195 (257)
..+..+...+...|++++|...|+.....++. +...|..+..++...|++++|...|++.....+. +...+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 34444555555566666666666555554333 4555555555556666666666666655554322 445555555566
Q ss_pred HhcCcHHHHHHHHHHHHh
Q 041259 196 SRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~ 213 (257)
...|++++|...|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665554
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.00 E-value=3.5e-09 Score=72.25 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=54.8
Q ss_pred cCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHH-HHhcCcH--HHH
Q 041259 58 AGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDG-LCKKNCI--ERA 134 (257)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a 134 (257)
.|++++|+..+++..+.. +.+...|..+...+...|++++|...|++..... +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 445555555555554432 2234455555555555555555555555544332 2233444444444 4444554 555
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHc
Q 041259 135 RNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEV 179 (257)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (257)
...++.....++. +...+..+...+...|++++|...++.+.+.
T Consensus 101 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 5555554444322 3444444444555555555555555544443
No 143
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.99 E-value=1.4e-06 Score=65.07 Aligned_cols=222 Identities=10% Similarity=0.020 Sum_probs=159.5
Q ss_pred HhcCChh-hHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 041259 21 CIESKFE-DSKLLLSEMKENGLTANTVICTTLMDAYFKAGE----------PSEALSLLDEMLDSRIEVTVVTFCVLIDG 89 (257)
Q Consensus 21 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (257)
.+.|.++ +|+++++.+...+ |-+..+|+.--.++...+. +++++.+++.+.....+ +..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3566666 7999999999865 3445556544433333332 67899999999886533 77888887777
Q ss_pred HHhcC--cHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc---
Q 041259 90 LCKSG--LVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNC-IERARNLFDEMPKRDMIPDTTAYTALIDGYLKH--- 163 (257)
Q Consensus 90 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 163 (257)
+...+ ++++++.++..+.+.. +-+..+|+.-.-.+...|. ++++++.++.+.+.++. |...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 77777 4899999999998765 5677888877777777787 68999999999988776 888887766665544
Q ss_pred -----------cCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHhCCCCCcH-
Q 041259 164 -----------ESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRC-----------GHLQEARVLFHEMIGRGILPDE- 220 (257)
Q Consensus 164 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~- 220 (257)
+.++++++.+.......+. |..+|+.+-..+.+. +.++++++.++++.+. .|+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPENK 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Ccccc
Confidence 4578899999998887654 788887665555554 4578899999999875 4553
Q ss_pred HHHHHHHH---HHHhcCCHHHHHHHHHHHHhC
Q 041259 221 ILCISLLK---KHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 221 ~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~ 249 (257)
..+..++. +.-..|..+++...+.++++-
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 22222221 112457788888899888753
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.98 E-value=2.6e-08 Score=75.26 Aligned_cols=121 Identities=11% Similarity=-0.013 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCC--------------HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC
Q 041259 117 VYTALIDGLCKKNCIERARNLFDEMPKRDMIPD--------------TTAYTALIDGYLKHESFKEALNLKNRMTEVGVD 182 (257)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 182 (257)
.+..+...+.+.|++++|...|++......... ...|..+..++...|++++|...+++..+....
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 444444455555555555555555444332211 345555555555555555555555555554322
Q ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 041259 183 LDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEA 239 (257)
Q Consensus 183 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 239 (257)
+...+..+..++...|++++|...|++.++.. +.+...+..+..++...|++++|
T Consensus 229 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 229 -NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555431 12334444455555555555555
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.98 E-value=7.1e-09 Score=70.67 Aligned_cols=125 Identities=10% Similarity=0.086 Sum_probs=102.2
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHH-HHhcCcH--
Q 041259 20 LCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDG-LCKSGLV-- 96 (257)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~-- 96 (257)
+...|++++|...++...+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 346789999999999988764 5678899999999999999999999999998764 2366778888888 7788998
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC
Q 041259 97 REAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMI 147 (257)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (257)
++|...+++..+.. +.+...+..+...+...|++++|...++...+....
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 99999999998764 456778888999999999999999999999887543
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.96 E-value=2.9e-09 Score=74.07 Aligned_cols=132 Identities=14% Similarity=0.059 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCC---------------HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCC
Q 041259 117 VYTALIDGLCKKNCIERARNLFDEMPKRDMIPD---------------TTAYTALIDGYLKHESFKEALNLKNRMTEVGV 181 (257)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (257)
.+..+...+...|++++|...|++......... ...+..+..++...|++++|...++...+...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344444555555555555555555544322100 25566666666777777777777776666532
Q ss_pred CccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCC
Q 041259 182 DLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAI-ELQNEMMGRG 250 (257)
Q Consensus 182 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~~ 250 (257)
.+...+..+..++...|++++|...|++..+.. +.+...+..+..++...++.+++. ..+..|...+
T Consensus 120 -~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 120 -NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred -ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 255666666777777777777777777766542 224455555666666666666555 4455554443
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.95 E-value=7.8e-09 Score=68.39 Aligned_cols=110 Identities=8% Similarity=-0.052 Sum_probs=90.9
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 041259 137 LFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGI 216 (257)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 216 (257)
.++.+....+. +...+..+...+...|++++|...|+........ +...|..+..++...|++++|...|++.....
T Consensus 9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 34555544322 5567778888999999999999999999887543 78889999999999999999999999998863
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 217 LPDEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
+.+...+..+..++...|++++|.+.|++.++.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 335678888999999999999999999998763
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.93 E-value=2.5e-09 Score=74.38 Aligned_cols=88 Identities=13% Similarity=0.043 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 041259 116 AVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGL 195 (257)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 195 (257)
..+..+..++...|++++|...++...+.... +...+..+..++...|++++|...|++..+.... +...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 45666666777777777777777776665433 5666777777777777777777777777665432 455666666666
Q ss_pred HhcCcHHHHH
Q 041259 196 SRCGHLQEAR 205 (257)
Q Consensus 196 ~~~~~~~~a~ 205 (257)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 6655555554
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.92 E-value=1.4e-07 Score=59.08 Aligned_cols=98 Identities=14% Similarity=-0.023 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 041259 10 LPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDG 89 (257)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (257)
...+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445555666666666666666666665543 3345556666666666666666666666665542 2244555555666
Q ss_pred HHhcCcHHHHHHHHHhcccC
Q 041259 90 LCKSGLVREAIDYFGRMPDF 109 (257)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~ 109 (257)
+...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666655543
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.92 E-value=7.1e-08 Score=61.70 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=8.1
Q ss_pred HHHHHHHHcccCHHHHHHHHHH
Q 041259 154 TALIDGYLKHESFKEALNLKNR 175 (257)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~ 175 (257)
..+..++...|++++|...+++
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDA 97 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHH
Confidence 3333333333333333333333
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.90 E-value=3.7e-08 Score=64.55 Aligned_cols=98 Identities=13% Similarity=0.021 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 041259 115 VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWG 194 (257)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 194 (257)
...+..+...+...|++++|...|+.....++. +...|..+..++...|++++|...|+...+..+. ++..+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 344455556666677777777777766665443 5666666666777777777777777776665432 45566666667
Q ss_pred HHhcCcHHHHHHHHHHHHhC
Q 041259 195 LSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~ 214 (257)
+...|++++|...|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777766653
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.90 E-value=1.9e-07 Score=58.55 Aligned_cols=99 Identities=16% Similarity=0.086 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 041259 45 TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDG 124 (257)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (257)
...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445555566666666666666666665542 2245555556666666666666666666655442 2344555555566
Q ss_pred HHhcCcHHHHHHHHHHhhhCC
Q 041259 125 LCKKNCIERARNLFDEMPKRD 145 (257)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~ 145 (257)
+...|++++|...++...+.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 666666666666666655543
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.2e-07 Score=60.66 Aligned_cols=98 Identities=18% Similarity=0.074 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 041259 115 VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWG 194 (257)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 194 (257)
...+..+...+...|++++|...|++..+..+. +...|..+..++...|++++|...+++..+.... +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 345667778888889999999999888877544 6788888899999999999999999998887543 67788888999
Q ss_pred HHhcCcHHHHHHHHHHHHhC
Q 041259 195 LSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~ 214 (257)
+...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999988874
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.86 E-value=5.3e-08 Score=63.82 Aligned_cols=110 Identities=10% Similarity=-0.029 Sum_probs=88.4
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 041259 137 LFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGI 216 (257)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 216 (257)
.|+.....++. +...+..+...+...|++++|...|+......+. +...|..+..++...|++++|...+++.....
T Consensus 6 ~l~~al~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 82 (142)
T 2xcb_A 6 TLAMLRGLSED-TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD- 82 (142)
T ss_dssp ---CCTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHcCCHH-HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 34444443322 4456677788899999999999999999987543 78889999999999999999999999999863
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041259 217 LPDEILCISLLKKHYERGNMDEAIELQNEMMGR 249 (257)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 249 (257)
+.+...+..+..++...|++++|.+.|++..+.
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 335677888999999999999999999988764
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.84 E-value=1.5e-07 Score=60.36 Aligned_cols=104 Identities=21% Similarity=0.268 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC--cc----HHHHHH
Q 041259 117 VYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVD--LD----LNAYTS 190 (257)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 190 (257)
++..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..+++..+.... ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3445555666666666666666665554433 4555666666666666666666666655543210 00 134555
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHH
Q 041259 191 LVWGLSRCGHLQEARVLFHEMIGRGILPDEILC 223 (257)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (257)
+..++...|++++|++.|++.+.. .|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 566666666777777766666553 3444433
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.83 E-value=2.1e-07 Score=62.49 Aligned_cols=97 Identities=12% Similarity=0.006 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 041259 80 VVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDG 159 (257)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (257)
...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|+..++...+.+.. +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3444445555555555555555555544432 224444444555555555555555555554444322 34444445555
Q ss_pred HHcccCHHHHHHHHHHHHH
Q 041259 160 YLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~ 178 (257)
+...|++++|...|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555554444
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.82 E-value=6.9e-07 Score=69.69 Aligned_cols=197 Identities=9% Similarity=-0.029 Sum_probs=140.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcc----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-Cccc
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGLTAN----------------TVICTTLMDAYFKAGEPSEALSLLDEMLDSR-IEVT 79 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 79 (257)
...+.+.|++++|.+.|..+.+...... ...+..+...|...|++++|.+.+.++.... ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4557789999999999999987532111 1246788999999999999999998876521 1112
Q ss_pred H----HHHHHHHHHHHhcCcHHHHHHHHHhccc----CCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhC----CC
Q 041259 80 V----VTFCVLIDGLCKSGLVREAIDYFGRMPD----FGLHP-NVAVYTALIDGLCKKNCIERARNLFDEMPKR----DM 146 (257)
Q Consensus 80 ~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 146 (257)
. .+.+.+-..+...|+++.+..+++.... .+..+ -..++..+...+...|++++|..+++++... +-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2233344455567889999998877642 22222 2457788999999999999999999886532 11
Q ss_pred CC-CHHHHHHHHHHHHcccCHHHHHHHHHHHHHc----CCCcc--HHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 147 IP-DTTAYTALIDGYLKHESFKEALNLKNRMTEV----GVDLD--LNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 147 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
.+ ...++..+++.|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2467888899999999999999999887642 11111 34566777778889999999988877754
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.82 E-value=4.3e-07 Score=58.78 Aligned_cols=98 Identities=16% Similarity=0.039 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 041259 114 NVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVW 193 (257)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 193 (257)
+...+..+...+...|++++|...|+......+. +...+..+..++...|++++|...++...+.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 4455555556666666666666666665554333 4555666666666666666666666666554322 4555666666
Q ss_pred HHHhcCcHHHHHHHHHHHHh
Q 041259 194 GLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~ 213 (257)
++...|++++|...+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666665554
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.81 E-value=1.4e-07 Score=60.48 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCc--cc----HHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIE--VT----VVTFCV 85 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 85 (257)
.+..+-..+.+.|++++|++.|++..+.. |.+...|..+..+|...|++++|+..+++.++.... ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34455556666666666666666665543 344555666666666666666666666665543110 00 123444
Q ss_pred HHHHHHhcCcHHHHHHHHHhccc
Q 041259 86 LIDGLCKSGLVREAIDYFGRMPD 108 (257)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~ 108 (257)
+..++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555555555555555555443
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.81 E-value=1.6e-07 Score=60.85 Aligned_cols=98 Identities=16% Similarity=0.080 Sum_probs=62.0
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
+...|..+...+...|++++|...|....... +.+...|..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45556666666666777777777776666653 3445666666666666677777776666666543 224556666666
Q ss_pred HHHhcCcHHHHHHHHHhccc
Q 041259 89 GLCKSGLVREAIDYFGRMPD 108 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~ 108 (257)
++...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666543
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=3.9e-07 Score=59.69 Aligned_cols=95 Identities=15% Similarity=-0.010 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCccc----HHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHH
Q 041259 46 VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVT----VVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTAL 121 (257)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (257)
..+..+...+...|++++|+..|++..+.. |+ ...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 334444444444444444444444444331 11 2333344444444444444444444433321 1223333344
Q ss_pred HHHHHhcCcHHHHHHHHHHhhh
Q 041259 122 IDGLCKKNCIERARNLFDEMPK 143 (257)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~ 143 (257)
..++...|++++|...|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1.2e-06 Score=68.25 Aligned_cols=197 Identities=9% Similarity=0.006 Sum_probs=140.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCccc----------------HHHHHHHHHHHHhcCcHHHHHHHHHhcccCCC-CCC
Q 041259 52 MDAYFKAGEPSEALSLLDEMLDSRIEVT----------------VVTFCVLIDGLCKSGLVREAIDYFGRMPDFGL-HPN 114 (257)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 114 (257)
...+.+.|++++|++.|.++.+...... ..++..+...|...|++++|.+++..+...-- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4557788999999999999987532211 13477889999999999999999988754210 112
Q ss_pred H----HHHHHHHHHHHhcCcHHHHHHHHHHhhh----CCCCC-CHHHHHHHHHHHHcccCHHHHHHHHHHHHHc----CC
Q 041259 115 V----AVYTALIDGLCKKNCIERARNLFDEMPK----RDMIP-DTTAYTALIDGYLKHESFKEALNLKNRMTEV----GV 181 (257)
Q Consensus 115 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 181 (257)
. .+.+.+-..+...|+++.|..+++.... .+..+ -..++..+...+...|++++|..+++.+... +-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1223333444557899999998887643 22222 2467788999999999999999999987642 11
Q ss_pred -CccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 182 -DLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR----GILPD--EILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 182 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
+....++..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 123567888999999999999999999887653 11212 23455666677788999999998887754
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.80 E-value=2e-07 Score=57.88 Aligned_cols=99 Identities=13% Similarity=-0.052 Sum_probs=65.8
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcc--cHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEV--TVVTFCVL 86 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 86 (257)
+...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|+..+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34456666667777777777777777776653 3455666667777777777777777777776652 22 45666666
Q ss_pred HHHHHhc-CcHHHHHHHHHhcccC
Q 041259 87 IDGLCKS-GLVREAIDYFGRMPDF 109 (257)
Q Consensus 87 l~~~~~~-~~~~~a~~~~~~~~~~ 109 (257)
..++... |++++|.+.++.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777 7777777777766654
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.80 E-value=2.2e-07 Score=57.64 Aligned_cols=99 Identities=10% Similarity=-0.052 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC--cHHHHHHHH
Q 041259 150 TTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILP--DEILCISLL 227 (257)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 227 (257)
...+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 34455556666666777777777766666532 245566666666677777777777777666642 22 355666666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhCC
Q 041259 228 KKHYER-GNMDEAIELQNEMMGRG 250 (257)
Q Consensus 228 ~~~~~~-g~~~~a~~~~~~m~~~~ 250 (257)
.++... |++++|.+.+++..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 667777 77777777777766543
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.79 E-value=1.6e-07 Score=60.03 Aligned_cols=108 Identities=14% Similarity=0.164 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCc--cc----HHHHH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIE--VT----VVTFC 84 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 84 (257)
..|..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++....... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456666677777777777777777776653 445666777777777777777777777777654211 11 45566
Q ss_pred HHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHH
Q 041259 85 VLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTAL 121 (257)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (257)
.+..++...|++++|.+.|++..+. .|+......+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 6666677777777777777666654 2444444333
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=5.9e-07 Score=58.83 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHH
Q 041259 115 VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPD----TTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTS 190 (257)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (257)
...+..+...+...|++++|...|++..+.. |+ ...+..+..++...|++++|...++...+... .+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHH
Confidence 3344444444444444444444444444432 22 33444444444555555555555554444321 13444444
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHh
Q 041259 191 LVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
+..++...|++++|...+++...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555544
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.78 E-value=4.3e-06 Score=62.73 Aligned_cols=202 Identities=9% Similarity=-0.026 Sum_probs=149.2
Q ss_pred ChhhHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHhcCCcccHHHHHH
Q 041259 9 DLPLYGTIIWGLCIES-KFEDSKLLLSEMKENGLTANTVICTTLMDAYFKA-G-EPSEALSLLDEMLDSRIEVTVVTFCV 85 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (257)
+..+|+.--..+...| .+++++++++.+.... +-+..+|+.-..++... + ++++++++++++.+...+ +..+|+.
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~ 164 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAY 164 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 3345776666777777 5999999999999875 56778888877777776 6 889999999999987533 7778877
Q ss_pred HHHHHHhcCcHH--------HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCc-------HHHHHHHHHHhhhCCCCCCH
Q 041259 86 LIDGLCKSGLVR--------EAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNC-------IERARNLFDEMPKRDMIPDT 150 (257)
Q Consensus 86 ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~ 150 (257)
-.-.+.+.+.++ ++++.++++.+.. +-|...|+.....+.+.+. ++++++.+++.....+. |.
T Consensus 165 R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~ 242 (349)
T 3q7a_A 165 LHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NV 242 (349)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CH
Confidence 666666655555 8899999988765 5678888888777777775 78999999998887766 88
Q ss_pred HHHHHHHHHHHcccCH--------------------HHHHHHHHHHHHcC-----CCccHHHHHHHHHHHHhcCcHHHHH
Q 041259 151 TAYTALIDGYLKHESF--------------------KEALNLKNRMTEVG-----VDLDLNAYTSLVWGLSRCGHLQEAR 205 (257)
Q Consensus 151 ~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~ 205 (257)
..|+.+-..+.+.|.. .....+...+...+ ..++...+..++..|...|+.++|.
T Consensus 243 SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~ 322 (349)
T 3q7a_A 243 SAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA 322 (349)
T ss_dssp HHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH
Confidence 8888766666655543 23333333333222 1357889999999999999999999
Q ss_pred HHHHHHHhC
Q 041259 206 VLFHEMIGR 214 (257)
Q Consensus 206 ~~~~~~~~~ 214 (257)
++++.+.+.
T Consensus 323 ~~~~~l~~~ 331 (349)
T 3q7a_A 323 KVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999998754
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.78 E-value=1.7e-07 Score=59.97 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC--cc----HHHHHH
Q 041259 117 VYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVD--LD----LNAYTS 190 (257)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 190 (257)
.+..+...+...|++++|...++........ +...+..+...+...|++++|...++...+.... ++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4445555556666666666666665554322 4555556666666666666666666665543211 11 455666
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 041259 191 LVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISL 226 (257)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 226 (257)
+..++...|++++|...+++..+. .|+......+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 666666677777777777666653 3344443333
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.77 E-value=2.5e-07 Score=62.15 Aligned_cols=100 Identities=11% Similarity=0.021 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 041259 44 NTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALID 123 (257)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (257)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666667777777777777777776653 2255666667777777777777777777766553 344666666777
Q ss_pred HHHhcCcHHHHHHHHHHhhhCC
Q 041259 124 GLCKKNCIERARNLFDEMPKRD 145 (257)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~ 145 (257)
++...|++++|...|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 7777777777777777665543
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.73 E-value=2.3e-07 Score=58.99 Aligned_cols=96 Identities=6% Similarity=-0.102 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLC 91 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 91 (257)
.+..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+... .+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34445566667777777777777776653 44566666777777777777777777777766532 24556666677777
Q ss_pred hcCcHHHHHHHHHhcccC
Q 041259 92 KSGLVREAIDYFGRMPDF 109 (257)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~ 109 (257)
..|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777766543
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.72 E-value=1.7e-07 Score=62.34 Aligned_cols=132 Identities=14% Similarity=0.064 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC-CC----HHHHHHHHHHHHcccCHHHHHHHHHHHHHcC----CCc-cHH
Q 041259 117 VYTALIDGLCKKNCIERARNLFDEMPKRDMI-PD----TTAYTALIDGYLKHESFKEALNLKNRMTEVG----VDL-DLN 186 (257)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 186 (257)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555555555555555554332100 01 1355556666666677777776666654321 111 134
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 187 AYTSLVWGLSRCGHLQEARVLFHEMIGR----GILP-DEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.+..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666677777778888887777766542 1111 134566677777888888888888887664
No 172
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.72 E-value=1e-05 Score=64.33 Aligned_cols=207 Identities=13% Similarity=0.020 Sum_probs=140.8
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHH-HHHHHh
Q 041259 27 EDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREA-IDYFGR 105 (257)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~ 105 (257)
+++..+|+++... .+.+...|...+..+.+.|+.+.|..++++.... +.+...|.. |....+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 4567788888875 3667888998899899999999999999999987 334333332 2221111111 122222
Q ss_pred cccCC--------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccc-CHHHHHHHHHHH
Q 041259 106 MPDFG--------LHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHE-SFKEALNLKNRM 176 (257)
Q Consensus 106 ~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~ 176 (257)
..... .......|...+....+.++.+.|..+|+.. .. ...+...|...+..-...+ +.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 11000 0112346777777777888999999999998 32 2234455544333333334 699999999998
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 177 TEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 177 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.+.... ++..+...+......|+.+.|..+|+++. .....|...+..-...|+.+.+.+++++..+
T Consensus 347 l~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 876422 45556667887888999999999999873 2577788888877788999999999998875
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.71 E-value=3.1e-07 Score=58.31 Aligned_cols=90 Identities=12% Similarity=0.015 Sum_probs=40.9
Q ss_pred HHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcH
Q 041259 122 IDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHL 201 (257)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 201 (257)
...+.+.|++++|...|+...+..+. +...|..+..++...|++++|...+++..+..+. +...+..+..++...|++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 33444444444444444444443322 3444444444444444444444444444443322 334444444444444444
Q ss_pred HHHHHHHHHHHh
Q 041259 202 QEARVLFHEMIG 213 (257)
Q Consensus 202 ~~a~~~~~~~~~ 213 (257)
++|...+++.++
T Consensus 102 ~~A~~~~~~al~ 113 (121)
T 1hxi_A 102 NAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.68 E-value=2.7e-07 Score=73.04 Aligned_cols=123 Identities=13% Similarity=0.073 Sum_probs=96.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc
Q 041259 14 GTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKS 93 (257)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (257)
..+...+.+.|++++|.+.+++..+.. +.+..+|..+..++.+.|++++|++.+++..+.. +.+..++..+..+|...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 334455678899999999999998874 5568899999999999999999999999999874 34678899999999999
Q ss_pred CcHHHHHHHHHhcccCCCCCCHHHHHHHHHH--HHhcCcHHHHHHHHH
Q 041259 94 GLVREAIDYFGRMPDFGLHPNVAVYTALIDG--LCKKNCIERARNLFD 139 (257)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 139 (257)
|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999987653 2233455555555 888899999999998
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.68 E-value=1.4e-05 Score=59.74 Aligned_cols=200 Identities=11% Similarity=0.016 Sum_probs=143.5
Q ss_pred HHHHHHHHHH---HHhcCCh-HHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc----------HHHHHHHHHhcccCC
Q 041259 45 TVICTTLMDA---YFKAGEP-SEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGL----------VREAIDYFGRMPDFG 110 (257)
Q Consensus 45 ~~~~~~l~~~---~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~ 110 (257)
...|..+... ..+.|.+ ++|+++++.++...+. +..+|+.--..+...+. +++++.+++.+....
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 3444444433 3455665 4799999999987433 45566654444433332 678888888887754
Q ss_pred CCCCHHHHHHHHHHHHhcC--cHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccC-HHHHHHHHHHHHHcCCCccHHH
Q 041259 111 LHPNVAVYTALIDGLCKKN--CIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHES-FKEALNLKNRMTEVGVDLDLNA 187 (257)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 187 (257)
+-+..+|+.-.-.+...+ .+++++.+++.+.+.++. |...|+.-..++...|. ++++++.+..+.+..+. |..+
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SA 181 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSS 181 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHH
Confidence 567788887777777777 489999999999998876 88888888877778887 69999999999998765 7888
Q ss_pred HHHHHHHHHhc--------------CcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc-----------CCHHHHHHH
Q 041259 188 YTSLVWGLSRC--------------GHLQEARVLFHEMIGRGILPDEILCISLLKKHYER-----------GNMDEAIEL 242 (257)
Q Consensus 188 ~~~li~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~ 242 (257)
|+.....+... +.++++.+.+....... +-|...|+.+--.+.+. +.++++++.
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 88777666654 45888999999888752 34666776544444444 357788888
Q ss_pred HHHHHhC
Q 041259 243 QNEMMGR 249 (257)
Q Consensus 243 ~~~m~~~ 249 (257)
++++.+.
T Consensus 261 ~~elle~ 267 (331)
T 3dss_A 261 CKELQEL 267 (331)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8888753
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.67 E-value=5.3e-07 Score=71.01 Aligned_cols=123 Identities=15% Similarity=0.072 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCccc--------------HHHHHHHHHHHHhcCcHHHHHHHHHhcccCC
Q 041259 45 TVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVT--------------VVTFCVLIDGLCKSGLVREAIDYFGRMPDFG 110 (257)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 110 (257)
...+..+...+.+.|++++|+..|++.++...... ..+|..+..+|.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44566677777777777777777777765421111 2444555555555555555555555554432
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHH
Q 041259 111 LHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEA 169 (257)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (257)
+.+...|..+..+|...|++++|...|++..+..+. +...+..+..++...++.+++
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 233444555555555555555555555555444322 334444444444444444443
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.67 E-value=6.9e-07 Score=70.37 Aligned_cols=121 Identities=14% Similarity=0.059 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCC---------------HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCC
Q 041259 81 VTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPN---------------VAVYTALIDGLCKKNCIERARNLFDEMPKRD 145 (257)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (257)
..+..+...+.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|+..+++..+..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 344445555555555555555555554321 111 2444444445555555555555555544443
Q ss_pred CCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHH
Q 041259 146 MIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEA 204 (257)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 204 (257)
.. +...|..+..+|...|++++|...|++..+.... +...+..+..++...++.+++
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 22 4444444455555555555555555554443211 333444444444444444443
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.64 E-value=1.6e-07 Score=74.33 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=49.8
Q ss_pred hcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHH
Q 041259 127 KKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARV 206 (257)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 206 (257)
+.|++++|.+.+++..+.... +...|..+..++...|++++|...+++..+.... +..++..+..++...|++++|.+
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 344555555555544443322 3444455555555555555555555555444321 34444455555555555555555
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 041259 207 LFHEMIGRGILPDEILCISLLKK--HYERGNMDEAIELQN 244 (257)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 244 (257)
.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 96 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555544431 1112222223222 444455555555544
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.63 E-value=2.7e-06 Score=54.28 Aligned_cols=94 Identities=12% Similarity=0.051 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCccc---HHHHHHHH
Q 041259 14 GTIIWGLCIESKFEDSKLLLSEMKENGLTANT---VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVT---VVTFCVLI 87 (257)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll 87 (257)
..+...+...|++++|.+.|+.+.+.. +.+. ..+..+..++...|++++|...|++..+.... + ..++..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 345566667777777777777777653 2222 46666777777777777777777777665322 2 45566667
Q ss_pred HHHHhcCcHHHHHHHHHhcccC
Q 041259 88 DGLCKSGLVREAIDYFGRMPDF 109 (257)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~ 109 (257)
.++...|++++|...|+.+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777776654
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.63 E-value=6.7e-07 Score=59.34 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCC---Cc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCcc-cHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKENGL---TA--NTVICTTLMDAYFKAGEPSEALSLLDEMLDS----RIEV-TVV 81 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 81 (257)
++..+...+...|++++|...+++..+... .+ ...++..+...+...|++++|...+++..+. +.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455556666666666666666666554210 00 0124555556666666666666666655432 1000 123
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhc
Q 041259 82 TFCVLIDGLCKSGLVREAIDYFGRM 106 (257)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~ 106 (257)
++..+...+...|++++|...+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444555555555555555555444
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.62 E-value=1.2e-06 Score=67.06 Aligned_cols=139 Identities=12% Similarity=0.021 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 041259 46 VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGL 125 (257)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (257)
..+..+...+.+.|++++|+..|++.++. .+... .....+ ...... +.+...|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGAKLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHGGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHHHHH-HHHHHHHHHHHHHH
Confidence 34666777788888888888888887752 00000 000000 000000 12334555566666
Q ss_pred HhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHH
Q 041259 126 CKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEAR 205 (257)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 205 (257)
.+.|++++|+..+++..+.... +...+..+..+|...|++++|...|++..+.... +...+..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666555433 4555666666666666666666666666554322 4455555555555555555544
Q ss_pred H
Q 041259 206 V 206 (257)
Q Consensus 206 ~ 206 (257)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.62 E-value=9.1e-07 Score=67.66 Aligned_cols=139 Identities=12% Similarity=0.015 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 041259 82 TFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYL 161 (257)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (257)
.+..+...+.+.|++++|...|++..+. .+... .....+ ....... .+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~~~~~-~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGAKLQP-VALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHGGGHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHHHHHH-HHHHHHHHHHHHHH
Confidence 4555666666777777777777665532 01000 000111 1111111 14678889999999
Q ss_pred cccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 041259 162 KHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIE 241 (257)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 241 (257)
+.|++++|...+++..+.... +...+..+..++...|++++|...+++..+.. +.+...+..+..++...++.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987543 68889999999999999999999999998852 2356677777788888888887765
Q ss_pred H
Q 041259 242 L 242 (257)
Q Consensus 242 ~ 242 (257)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.61 E-value=1.6e-05 Score=64.32 Aligned_cols=170 Identities=11% Similarity=0.028 Sum_probs=104.9
Q ss_pred hhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC-
Q 041259 26 FEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGE----------PSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSG- 94 (257)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~- 94 (257)
.++|++.++.+...+ |-+..+|+.--.++...++ ++++++.++++.+...+ +..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 345677777777654 3445556555555555555 67777777777765433 5666766666666666
Q ss_pred -cHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC-cHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc---------
Q 041259 95 -LVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKN-CIERARNLFDEMPKRDMIPDTTAYTALIDGYLKH--------- 163 (257)
Q Consensus 95 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 163 (257)
+++++++.++++.+.. +-+..+|+.-...+.+.| .++++++.++++.+.++. +...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 5577777777776654 446666666666666666 677777777777776655 666666655554432
Q ss_pred -----cCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCc
Q 041259 164 -----ESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGH 200 (257)
Q Consensus 164 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 200 (257)
+.++++.+.+.......+. +...|..+-..+.+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 4456666666666665433 55566655555555444
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.60 E-value=3.7e-06 Score=53.64 Aligned_cols=92 Identities=14% Similarity=0.032 Sum_probs=54.2
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHH
Q 041259 121 LIDGLCKKNCIERARNLFDEMPKRDMIPDT---TAYTALIDGYLKHESFKEALNLKNRMTEVGVDLD---LNAYTSLVWG 194 (257)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 194 (257)
+...+...|++++|...|+.+.+..+. +. ..+..+..++...|++++|...++.+.+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 344555666666666666666554322 22 35555666666666666666666666654322 2 4455666666
Q ss_pred HHhcCcHHHHHHHHHHHHhC
Q 041259 195 LSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~ 214 (257)
+...|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66667777777766666654
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.56 E-value=2.5e-06 Score=57.02 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 151 TAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
..|..+..+|...|++++|...++...+... .+...|..+..++...|++++|...|++....
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4455555566666666666666666555432 24555566666666666666666666665553
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.55 E-value=5e-07 Score=68.26 Aligned_cols=148 Identities=9% Similarity=-0.041 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 041259 46 VICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGL 125 (257)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (257)
..+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34556666677777788888877777654 223221 112222333222211 12555666666
Q ss_pred HhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCcHHHH
Q 041259 126 CKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWG-LSRCGHLQEA 204 (257)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a 204 (257)
.+.|++++|+..++...+.... +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777766665433 5566666667777777777777777666554321 33344444333 2234455666
Q ss_pred HHHHHHHHhC
Q 041259 205 RVLFHEMIGR 214 (257)
Q Consensus 205 ~~~~~~~~~~ 214 (257)
..+|..+...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 6666666543
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.54 E-value=7.4e-07 Score=67.32 Aligned_cols=148 Identities=11% Similarity=-0.032 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGL 90 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (257)
..+..+...+.+.|++++|...|+...... |+... +...++.+++...+ ....|..+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 446667778888999999999999988753 44331 11122222222111 112455566666
Q ss_pred HhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHcccCHHHH
Q 041259 91 CKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDG-YLKHESFKEA 169 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 169 (257)
.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+...+.... +...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655443 334555666666666666666666666666554332 33344444333 2233445555
Q ss_pred HHHHHHHHHc
Q 041259 170 LNLKNRMTEV 179 (257)
Q Consensus 170 ~~~~~~~~~~ 179 (257)
...|..+...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 5566655543
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.54 E-value=2.9e-07 Score=58.04 Aligned_cols=84 Identities=10% Similarity=-0.028 Sum_probs=38.5
Q ss_pred cCChhhHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHH
Q 041259 23 ESKFEDSKLLLSEMKENG--LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAI 100 (257)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 100 (257)
.|++++|+..|++..+.+ -+.+...+..+..++...|++++|+..|++..+... -+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 122333444555555555555555555555554421 13444444555555555555555
Q ss_pred HHHHhcc
Q 041259 101 DYFGRMP 107 (257)
Q Consensus 101 ~~~~~~~ 107 (257)
..+++..
T Consensus 82 ~~~~~al 88 (117)
T 3k9i_A 82 ELLLKII 88 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.53 E-value=2.6e-06 Score=56.92 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcC
Q 041259 115 VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVG 180 (257)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (257)
...|..+..+|.+.|++++|+..++.....++. +...|..+..++...|++++|...|+...+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 456667777777778888888877777766544 66777777777888888888888887777753
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.50 E-value=1.3e-05 Score=64.69 Aligned_cols=173 Identities=9% Similarity=-0.018 Sum_probs=135.5
Q ss_pred CChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc----------HHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 041259 59 GEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGL----------VREAIDYFGRMPDFGLHPNVAVYTALIDGLCKK 128 (257)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (257)
...++|++.++++...... +..+|+.--.++...++ ++++++.++.+.+.. +-+..+|..-.-.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3456889999999987533 56777776666666666 899999999998765 56778888888888888
Q ss_pred C--cHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccc-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-------
Q 041259 129 N--CIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHE-SFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRC------- 198 (257)
Q Consensus 129 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 198 (257)
+ +++++++.++.+.+.+.. +..+|+.-..++...| .++++.+.++++.+..+. +..+|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 8 779999999999998877 8889998888888888 899999999999888655 788888877776653
Q ss_pred -------CcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCH
Q 041259 199 -------GHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNM 236 (257)
Q Consensus 199 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (257)
+.++++.+.+.+..... +-+...|..+-..+.+.+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 56789999998888752 33566777666666665553
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.50 E-value=1.9e-05 Score=51.22 Aligned_cols=110 Identities=12% Similarity=0.082 Sum_probs=49.7
Q ss_pred cHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc----ccCHHHHH
Q 041259 95 LVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLK----HESFKEAL 170 (257)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 170 (257)
++++|.++|++..+.| .|... +...|...+..++|.+.|+...+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4445555555554444 22222 3334444444444555555444432 33444444444444 44555555
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhCC
Q 041259 171 NLKNRMTEVGVDLDLNAYTSLVWGLSR----CGHLQEARVLFHEMIGRG 215 (257)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~ 215 (257)
..|++..+.| ++..+..+...|.. .+++++|..++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555544443 33344444444444 444555555555444443
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.49 E-value=6.1e-07 Score=56.52 Aligned_cols=59 Identities=14% Similarity=-0.030 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 041259 82 TFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEM 141 (257)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 141 (257)
.+..+..++...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334444444444444444444433322 122333333333444444444444444333
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.44 E-value=3.1e-06 Score=66.92 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhh-----CCCC-C-CHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 041259 117 VYTALIDGLCKKNCIERARNLFDEMPK-----RDMI-P-DTTAYTALIDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
+++.|...|...|++++|..++++... .|.. | ...+...+..++...+.+++|+.+++.+.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555544444321 1211 1 112233344444455555555555555543
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.43 E-value=3.6e-06 Score=66.54 Aligned_cols=125 Identities=11% Similarity=0.003 Sum_probs=95.5
Q ss_pred HHHhcCcHHHHHHHHHHhhhC-----CCC-C-CHHHHHHHHHHHHcccCHHHHHHHHHHHHHc-----CC-Cc-cHHHHH
Q 041259 124 GLCKKNCIERARNLFDEMPKR-----DMI-P-DTTAYTALIDGYLKHESFKEALNLKNRMTEV-----GV-DL-DLNAYT 189 (257)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~ 189 (257)
.+...|++++|..++++.++. |.. | ...+++.|..+|...|++++|..++++..+. |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999876532 111 1 2467899999999999999999999887642 21 22 346789
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHh-----CCC-CCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 190 SLVWGLSRCGHLQEARVLFHEMIG-----RGI-LPD-EILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 190 ~li~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
.|...|...|++++|+.++++..+ .|. .|+ ..+...+-.++...+.+++|..++..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998874 232 233 34556677788899999999999999876
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.42 E-value=9.5e-06 Score=52.69 Aligned_cols=110 Identities=11% Similarity=0.011 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCcHHHHH
Q 041259 60 EPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK----KNCIERAR 135 (257)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 135 (257)
++++|+++|++..+.|.+ . .. +...|...+..++|.++|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~-~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-F--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-h--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 344455555555444311 1 11 3444444444444555555444432 33344444444444 44555555
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHcC
Q 041259 136 NLFDEMPKRDMIPDTTAYTALIDGYLK----HESFKEALNLKNRMTEVG 180 (257)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 180 (257)
..|+...+.| +...+..+...|.. .++.++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555544442 33444444444444 445555555555544443
No 196
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.36 E-value=0.00016 Score=57.55 Aligned_cols=188 Identities=11% Similarity=-0.056 Sum_probs=128.8
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------------C
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSR------------I 76 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~ 76 (257)
+...|-..+..+.+.|+.+.|..++++.... |.+...|.. |....+.++. ++.+.+.- .
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcc
Confidence 4567777888888999999999999999987 455444432 2222222222 23332210 0
Q ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh-cCcHHHHHHHHHHhhhCCCCCCHHHHHH
Q 041259 77 EVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK-KNCIERARNLFDEMPKRDMIPDTTAYTA 155 (257)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (257)
......|...+....+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|+...+.... +...+..
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~ 359 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 112356777777777788899999999998 321 2344455433332222 33699999999998876432 4555666
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 156 LIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
.+......|+.+.|..+|+.+. .....|...+..-...|+.+.+..++++...
T Consensus 360 yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777788999999999999873 2578888888887888999999998888774
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=9.3e-07 Score=54.82 Aligned_cols=95 Identities=13% Similarity=0.015 Sum_probs=61.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCccc------HHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVT------VVT 82 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 82 (257)
+...|..+...+...|++++|.+.|+...+.. +.+...+..+..++...|++++|+..+++..+.... + ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHH
Confidence 45566677777777888888888888777663 446677777777788888888888888877765322 2 334
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHh
Q 041259 83 FCVLIDGLCKSGLVREAIDYFGR 105 (257)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~ 105 (257)
+..+..++...|+.+.+...+++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHH
Confidence 44455555555555554444433
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.33 E-value=2.5e-05 Score=51.53 Aligned_cols=93 Identities=16% Similarity=0.098 Sum_probs=53.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhhCCCCC------C-----HHHHHHHHHHHHcccCHHHHHHHHHHHHHc-------CC
Q 041259 120 ALIDGLCKKNCIERARNLFDEMPKRDMIP------D-----TTAYTALIDGYLKHESFKEALNLKNRMTEV-------GV 181 (257)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~ 181 (257)
.....+...|++++|...|+...+..+.. + ...|..+..++...|++++|+..+++..+. ..
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 33444455555555555555554432220 1 125666666666667777766666666654 32
Q ss_pred CccHHHH----HHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 182 DLDLNAY----TSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 182 ~~~~~~~----~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
. +...| .....++...|++++|+..|++.++
T Consensus 96 d-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 D-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp T-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2 44555 6666677777777777777776664
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.30 E-value=1.5e-05 Score=52.54 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041259 47 ICTTLMDAYFKAGEPSEALSLLDEMLDS 74 (257)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (257)
.+......+.+.|++++|+..|++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 3445555566667777777777766654
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.2e-06 Score=54.34 Aligned_cols=93 Identities=11% Similarity=0.101 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc-------HH
Q 041259 149 DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD-------EI 221 (257)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~ 221 (257)
+...+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 345666677777777777777777777776643 25667777777777778888888877777764 333 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 041259 222 LCISLLKKHYERGNMDEAIELQN 244 (257)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~ 244 (257)
.+..+..++...|+++.|.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 45555556666666655554443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.20 E-value=1.1e-05 Score=50.33 Aligned_cols=61 Identities=10% Similarity=-0.098 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHH
Q 041259 116 AVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMT 177 (257)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (257)
..+..+...+...|++++|...|+.....+.. +...|..+..++...|++++|...|++..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344444444444444444444444333222 33344444444444444444444444433
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.20 E-value=3.8e-05 Score=45.38 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041259 11 PLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS 74 (257)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (257)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344445555555555555555555555442 234445555555555555555555555555543
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.16 E-value=3.2e-05 Score=48.25 Aligned_cols=80 Identities=18% Similarity=0.108 Sum_probs=67.8
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 041259 133 RARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMI 212 (257)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 212 (257)
.|...|+...+..+. +...+..+...+...|++++|...+++..+.... +...+..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466778877776554 7888999999999999999999999999887543 67788899999999999999999999887
Q ss_pred hC
Q 041259 213 GR 214 (257)
Q Consensus 213 ~~ 214 (257)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.15 E-value=4.3e-05 Score=45.14 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHH
Q 041259 187 AYTSLVWGLSRCGHLQEARVLFHEMI 212 (257)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~~~ 212 (257)
.+..+..++...|++++|...+++..
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 45 AWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333344444444444444333
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.11 E-value=2.1e-05 Score=51.80 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=49.7
Q ss_pred CcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccC----------HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 041259 129 NCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHES----------FKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRC 198 (257)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 198 (257)
+.+++|.+.++...+..+. +...|..+..++...++ +++|+..|++..+..+. +..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 3444455555544444333 44444444444444433 34566666665555432 445555555555544
Q ss_pred -----------CcHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041259 199 -----------GHLQEARVLFHEMIGRGILPDEILCISLLK 228 (257)
Q Consensus 199 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (257)
|++++|...|++.++. .|+...|...+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3677777777777663 555555544443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.06 E-value=1.7e-05 Score=52.19 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=68.1
Q ss_pred HhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 041259 21 CIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEP----------SEALSLLDEMLDSRIEVTVVTFCVLIDGL 90 (257)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 90 (257)
.+.+.+++|.+.++...+.. |.+...|..+..++...+++ ++|+..|++.++.... ...+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 45567888888888888775 56788888888888777664 4888888888876432 567778888888
Q ss_pred HhcC-----------cHHHHHHHHHhcccCCCCCCHHHHHHH
Q 041259 91 CKSG-----------LVREAIDYFGRMPDFGLHPNVAVYTAL 121 (257)
Q Consensus 91 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (257)
...| ++++|.+.|++..+. .|+...|...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~a 130 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKS 130 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 7664 677777777766654 3554444333
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.94 E-value=6.8e-05 Score=45.49 Aligned_cols=62 Identities=24% Similarity=0.206 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 041259 150 TTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMI 212 (257)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 212 (257)
...+..+..++...|++++|...|++..+.... +...|..+..++...|++++|...+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444444444443322 33344444444444455554444444443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.91 E-value=0.00011 Score=44.49 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=35.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLD 73 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (257)
+...+..+...+.+.|++++|+..|+.+.+.. +.+...|..+..++...|++++|+..|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555566666666666666655543 33444555555666666666666666655543
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.78 E-value=0.0015 Score=49.33 Aligned_cols=73 Identities=14% Similarity=0.007 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHH
Q 041259 148 PDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCI 224 (257)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (257)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+...|++++|.+.+++.... .|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 367777777777777788888888888888875 67777777788888888888888888888774 56766655
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.73 E-value=0.00029 Score=54.86 Aligned_cols=87 Identities=10% Similarity=-0.051 Sum_probs=67.9
Q ss_pred cccCHHHHHHHHHHHHHc-----CC-Cc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-----C-CCCc-HHHHHHHH
Q 041259 162 KHESFKEALNLKNRMTEV-----GV-DL-DLNAYTSLVWGLSRCGHLQEARVLFHEMIGR-----G-ILPD-EILCISLL 227 (257)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~ 227 (257)
..|++++|..++++..+. |. .| ...+++.+..+|...|++++|+.++++.++- | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999887652 21 12 2467899999999999999999999988742 3 2333 45788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 041259 228 KKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~m~~ 248 (257)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998765
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.73 E-value=0.00014 Score=56.69 Aligned_cols=61 Identities=7% Similarity=-0.043 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhccc-----CC-CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 041259 81 VTFCVLIDGLCKSGLVREAIDYFGRMPD-----FG-LHPN-VAVYTALIDGLCKKNCIERARNLFDEM 141 (257)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 141 (257)
.+++.+...|...|++++|+.++++... .| -.|+ ..+++.|...|...|++++|..++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4455555555555555555555554421 11 0111 234555555555666666665555554
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.69 E-value=0.0079 Score=50.78 Aligned_cols=155 Identities=15% Similarity=0.090 Sum_probs=97.4
Q ss_pred HHHHHhcCChhhHHH-HHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc
Q 041259 17 IWGLCIESKFEDSKL-LLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGL 95 (257)
Q Consensus 17 i~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (257)
.......+++++|.+ ++.. + ++......++..+.+.|.++.|+++.++- . .-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCC
Confidence 344456788888876 4421 1 21223377778888899999888766321 1 11334556799
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHH
Q 041259 96 VREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNR 175 (257)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (257)
+++|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...++.+....+.+.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 99999987655 4667899999999999999999999998753 23344444456666665555555
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 041259 176 MTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHE 210 (257)
Q Consensus 176 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 210 (257)
....|. ++....+|.+.|++++|.+++.+
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 554432 12223334445555555555543
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.69 E-value=0.00024 Score=55.31 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=42.7
Q ss_pred hcCChHHHHHHHHHHHhcC-------CcccHHHHHHHHHHHHhcCcHHHHHHHHHhccc-----CC-CCC-CHHHHHHHH
Q 041259 57 KAGEPSEALSLLDEMLDSR-------IEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPD-----FG-LHP-NVAVYTALI 122 (257)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~-~~~-~~~~~~~l~ 122 (257)
+.|++++|+..+++.++.. .+....+++.+...|...|++++|+.++++... .| ..| ...+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 4455555655555554321 111234555555666666666666655554431 11 011 123455566
Q ss_pred HHHHhcCcHHHHHHHHHHh
Q 041259 123 DGLCKKNCIERARNLFDEM 141 (257)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~ 141 (257)
..|...|++++|..++++.
T Consensus 379 ~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 6666666666666665554
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.68 E-value=0.00046 Score=41.42 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=44.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041259 16 IIWGLCIESKFEDSKLLLSEMKENGLTANTV-ICTTLMDAYFKAGEPSEALSLLDEMLDSR 75 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (257)
....+.+.|++++|.+.++.+.+.. +.+.. .+..+..++...|++++|+..|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4455667788888888888887764 34556 77777788888888888888888887653
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.66 E-value=0.00071 Score=52.72 Aligned_cols=92 Identities=13% Similarity=0.121 Sum_probs=66.4
Q ss_pred HHHHHcccCHHHHHHHHHHHHHcC---C----CccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-----C-CCCc-HHH
Q 041259 157 IDGYLKHESFKEALNLKNRMTEVG---V----DLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR-----G-ILPD-EIL 222 (257)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~ 222 (257)
+..+...|++++|..++++..+.. . +....+++.+...|...|++++|+.++++.+.- | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444566788888888888876531 1 113457888888888889999988888877642 2 2233 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 223 CISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 223 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77888888889999999888887654
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.64 E-value=0.0029 Score=47.79 Aligned_cols=144 Identities=13% Similarity=-0.021 Sum_probs=95.0
Q ss_pred CCccHHHHHHHHHHHH--hcC---ChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHh---cC-----cHHHHHHHHHhcc
Q 041259 41 LTANTVICTTLMDAYF--KAG---EPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCK---SG-----LVREAIDYFGRMP 107 (257)
Q Consensus 41 ~~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~-----~~~~a~~~~~~~~ 107 (257)
.+.+...|...+++.. ..+ ...+|..+|++..+..+. ....|..+.-+|.. .+ ........++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3567777777776543 333 357899999999886321 33455444433321 11 1111111121111
Q ss_pred c-CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHH
Q 041259 108 D-FGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLN 186 (257)
Q Consensus 108 ~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 186 (257)
. ...+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++....+ |...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcC
Confidence 1 1125677888888877888899999999999998876 688888888888999999999999999988864 5555
Q ss_pred HHH
Q 041259 187 AYT 189 (257)
Q Consensus 187 ~~~ 189 (257)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.64 E-value=0.0041 Score=52.51 Aligned_cols=128 Identities=19% Similarity=0.143 Sum_probs=84.5
Q ss_pred HHHHhcCChHHHHH-HHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcH
Q 041259 53 DAYFKAGEPSEALS-LLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCI 131 (257)
Q Consensus 53 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (257)
......+++++|.+ ++..+ + +......++..+.+.|.++.|+++.+. |. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence 33446788888876 44221 1 022337788888899999999877632 11 113345678999
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 041259 132 ERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEM 211 (257)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 211 (257)
++|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999987654 2678999999999999999999999998643 223333334455555544444444
Q ss_pred Hh
Q 041259 212 IG 213 (257)
Q Consensus 212 ~~ 213 (257)
..
T Consensus 734 ~~ 735 (814)
T 3mkq_A 734 ET 735 (814)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.50 E-value=0.00055 Score=41.05 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=22.4
Q ss_pred HHhcCcHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHcccCHHHHHHHHHHHHH
Q 041259 125 LCKKNCIERARNLFDEMPKRDMIPDTT-AYTALIDGYLKHESFKEALNLKNRMTE 178 (257)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (257)
+...|++++|...++...+.... +.. .+..+..++...|++++|...|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444444444433222 233 444444444444444444444444444
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.36 E-value=0.0042 Score=40.47 Aligned_cols=88 Identities=9% Similarity=0.066 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccc---CHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCcHHHH
Q 041259 130 CIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHE---SFKEALNLKNRMTEVGVDL--DLNAYTSLVWGLSRCGHLQEA 204 (257)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a 204 (257)
....+.+-|.+....+. ++..+...+..++++.+ +.+++..+++...+.. .| ....+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45566677776666555 57777777888888877 5668888888888764 23 355566666777888889999
Q ss_pred HHHHHHHHhCCCCCcHH
Q 041259 205 RVLFHEMIGRGILPDEI 221 (257)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ 221 (257)
.+.++.+++. .|+..
T Consensus 91 ~~y~~~lL~i--eP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQNN 105 (152)
T ss_dssp HHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHhc--CCCCH
Confidence 8888888874 56543
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.014 Score=39.04 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=58.3
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHH
Q 041259 54 AYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIER 133 (257)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (257)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 344566777776666554 1456677777777777777777777766543 2344445555666665
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHH
Q 041259 134 ARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNR 175 (257)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (257)
..++-+.....| -++.....+...|+++++.++|.+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555544444433 123334445556677777666643
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.32 E-value=0.004 Score=37.02 Aligned_cols=65 Identities=18% Similarity=0.102 Sum_probs=32.8
Q ss_pred ChhhHHHHHHHHHhcCC---hhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041259 9 DLPLYGTIIWGLCIESK---FEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS 74 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (257)
|...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433222 455555555555543 334445555555555555555555555555544
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.26 E-value=0.014 Score=37.05 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041259 186 NAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGRGL 251 (257)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 251 (257)
..+...+..+...|+-++..++...+.. +.+|++.....+..+|.+.|+..+|.+++.+..++|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3444555555666666666666665433 2345555566666666666666666666666666654
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.24 E-value=0.0088 Score=38.97 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=51.3
Q ss_pred cHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC---cHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHcccCHHHH
Q 041259 95 LVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKN---CIERARNLFDEMPKRDMIP--DTTAYTALIDGYLKHESFKEA 169 (257)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a 169 (257)
....+.+-|.+....+ +++..+...+.-++++.+ +.++++.+|+...+.+ .| ....+..+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3445555555555444 356666666666667666 5557777777766654 12 244455566666777777777
Q ss_pred HHHHHHHHHc
Q 041259 170 LNLKNRMTEV 179 (257)
Q Consensus 170 ~~~~~~~~~~ 179 (257)
.+.++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777777765
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.23 E-value=0.0036 Score=37.24 Aligned_cols=46 Identities=13% Similarity=-0.021 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 041259 167 KEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 213 (257)
++|..++++..+.... +......+...+.+.|++++|...|+++.+
T Consensus 26 ~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444443322 334444444444444444444444444444
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.19 E-value=0.0067 Score=36.84 Aligned_cols=23 Identities=4% Similarity=0.030 Sum_probs=9.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 041259 49 TTLMDAYFKAGEPSEALSLLDEM 71 (257)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~ 71 (257)
..+...+.+.+++..|..+|+..
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~A 31 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQA 31 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHH
Confidence 33444444444444444444443
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.14 E-value=0.011 Score=35.92 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=55.0
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHHHHHHcC------CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041259 8 ADLPLYGTIIWGLCIESKFEDSKLLLSEMKENG------LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS 74 (257)
Q Consensus 8 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (257)
.+..-+..+...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|+..+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345556678889999999999999999987641 1345678889999999999999999999999876
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.042 Score=36.74 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=92.9
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCH
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESF 166 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (257)
.....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 44556779999999998765 5788999999999999999999999988753 34455566778888
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041259 167 KEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEM 246 (257)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 246 (257)
+....+-+.....|- ++....++...|+++++.+++.+.-+ .|-.. ......|-.+.|.++..++
T Consensus 77 e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 887777666655542 45555667788999999999854332 22111 1122367777888887765
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.89 E-value=0.03 Score=36.22 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCC
Q 041259 94 GLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMI 147 (257)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (257)
+|.++|.++|+.+.+..-.- ...|......-.+.|+++.|.+++......+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 44555555555443321111 344444444445555555555555555554443
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.85 E-value=0.017 Score=36.24 Aligned_cols=90 Identities=9% Similarity=0.023 Sum_probs=50.5
Q ss_pred HHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHH---HHHHHHHHHHcCCC-ccHHHHHHHHHHHHhcC
Q 041259 124 GLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKE---ALNLKNRMTEVGVD-LDLNAYTSLVWGLSRCG 199 (257)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~ 199 (257)
..........+.+-|......|. ++..+-..+..++.+..+... +..+++.+.+.+.+ -.....-.+.-++.+.|
T Consensus 10 ~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 10 ELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 33334445555555555544433 456666666666666665554 66666666655311 13334445555666777
Q ss_pred cHHHHHHHHHHHHhC
Q 041259 200 HLQEARVLFHEMIGR 214 (257)
Q Consensus 200 ~~~~a~~~~~~~~~~ 214 (257)
++++|.+.++.+++.
T Consensus 89 ~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 89 EYEKALKYVRGLLQT 103 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 777777777777663
No 230
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.032 Score=46.51 Aligned_cols=129 Identities=16% Similarity=0.064 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCc-HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccc-CHHHHHHHHHHHHHc------CCCc-c----
Q 041259 118 YTALIDGLCKKNC-IERARNLFDEMPKRDMIPDTTAYTALIDGYLKHE-SFKEALNLKNRMTEV------GVDL-D---- 184 (257)
Q Consensus 118 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~---- 184 (257)
...++..+...++ .+.|..+|+++...++..+......++......+ +--+|.+++.+..+. ...+ +
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455665555666 5789999999887643322222223333333332 222344444443321 1110 1
Q ss_pred ------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041259 185 ------LNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 185 ------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
......-...|...|+++.|+.+.++.... .+-+..+|..|..+|...|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 123334456677889999999999998875 23347799999999999999999999998874
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.73 E-value=0.023 Score=36.74 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=34.8
Q ss_pred cCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 041259 164 ESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILP 218 (257)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 218 (257)
++.++|.++|+.+.+.+-.. ...|......-.++|++..|.+++...+..+..|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56677777777766543333 5556666666667777777777777777665443
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.65 E-value=0.017 Score=41.98 Aligned_cols=85 Identities=16% Similarity=0.174 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHh-----cCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc-cCH
Q 041259 96 VREAIDYFGRMPDFGLHPN---VAVYTALIDGLCK-----KNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKH-ESF 166 (257)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 166 (257)
...|...+++..+. .|+ ...|..+...|.. -|+.++|.+.|++..+.++.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34455555555543 243 3456666666665 366666666666666554322355555566666553 666
Q ss_pred HHHHHHHHHHHHcCCC
Q 041259 167 KEALNLKNRMTEVGVD 182 (257)
Q Consensus 167 ~~a~~~~~~~~~~~~~ 182 (257)
+.+.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 6666666666665444
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.34 E-value=0.19 Score=36.70 Aligned_cols=132 Identities=10% Similarity=-0.007 Sum_probs=88.3
Q ss_pred cCcHHHHHHHHHhcccCCCCCCHHHHHHHHH-HHHhc--C------cHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHc
Q 041259 93 SGLVREAIDYFGRMPDFGLHPNVAVYTALID-GLCKK--N------CIERARNLFDEMPKRDMIP-DTTAYTALIDGYLK 162 (257)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~--~------~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 162 (257)
.++.....+.+.++... .+....|..++. .+... | ....|...+++..+.+..- +-..|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~--dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRV--DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGG--GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCcc--ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh
Confidence 34444445555555432 233445555544 33332 3 3567778888887764321 24578888888888
Q ss_pred -----ccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhCCCC--CcHHHHHHH
Q 041259 163 -----HESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRC-GHLQEARVLFHEMIGRGIL--PDEILCISL 226 (257)
Q Consensus 163 -----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 226 (257)
.|+.++|.+.|++..+.+..-+..++......++.. |+.+.+.+.+++.+..... |+....+.+
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 499999999999999976433467777788888884 9999999999999987554 555544433
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.90 E-value=0.061 Score=41.31 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcc-----cCCCCCCHHHHH
Q 041259 47 ICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMP-----DFGLHPNVAVYT 119 (257)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 119 (257)
+...++..+...|++++++..+..+.... +.+...|..++.++.+.|+..+|++.|+.+. +.|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 45566777788888888888888887653 4477788888888888888888888888764 357888876543
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.85 E-value=0.16 Score=31.79 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHH---HHHHHHHHHhCCCCC--cHHHHHHHHHHHHhcCCHHHHHH
Q 041259 167 KEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQE---ARVLFHEMIGRGILP--DEILCISLLKKHYERGNMDEAIE 241 (257)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 241 (257)
..+.+-|......|. ++..+--.+..+++++.+... ++.+++.+.+.+ .| .......|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 333444443333332 344444444444554444333 555555544432 12 12223334445555555555555
Q ss_pred HHHHHHh
Q 041259 242 LQNEMMG 248 (257)
Q Consensus 242 ~~~~m~~ 248 (257)
.++.+++
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.12 Score=43.22 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=79.4
Q ss_pred HHHHHHHhcCC-hhhHHHHHHHHHHcCCCccHHHHH--HHHHHHHhcC-ChHHHHHHHHHHHhc------CCcc-cH---
Q 041259 15 TIIWGLCIESK-FEDSKLLLSEMKENGLTANTVICT--TLMDAYFKAG-EPSEALSLLDEMLDS------RIEV-TV--- 80 (257)
Q Consensus 15 ~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~--- 80 (257)
.++..+...++ ++.|..+|+.+.... |...++. .++..+...+ +--+|.+++.+..+. ..++ +.
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34444544555 578999999998864 4433332 2333332222 223455555444321 1111 11
Q ss_pred -------HHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 041259 81 -------VTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMP 142 (257)
Q Consensus 81 -------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (257)
.....-...+...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112222455677899999999999987763 4567899999999999999999999998874
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.45 E-value=1.2 Score=39.63 Aligned_cols=145 Identities=12% Similarity=0.057 Sum_probs=92.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCC------------------
Q 041259 51 LMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLH------------------ 112 (257)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 112 (257)
++..+...+..+.+.++..-. +.++..--.+..++...|++++|...|++... |+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 444455556665554433222 22444445667888889999999999987632 110
Q ss_pred -----CCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCc
Q 041259 113 -----PNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPD----TTAYTALIDGYLKHESFKEALNLKNRMTEVGVDL 183 (257)
Q Consensus 113 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 183 (257)
.-..-|..++..+.+.+.++.+.++-....+....-+ ...|..+...+...|++++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 1123467778888888888888887766554322112 125788889999999999999988877665443
Q ss_pred cHHHHHHHHHHHHhcCcHHH
Q 041259 184 DLNAYTSLVWGLSRCGHLQE 203 (257)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~ 203 (257)
......++..++..|..+.
T Consensus 971 -~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHH
T ss_pred -HHHHHHHHHHHHhCCChhh
Confidence 4566777776676655443
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.41 E-value=0.12 Score=39.60 Aligned_cols=70 Identities=14% Similarity=0.058 Sum_probs=52.6
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----CCCCCcHHHHH
Q 041259 154 TALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIG-----RGILPDEILCI 224 (257)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 224 (257)
..++..+...|+++++...+..+.... +.+...+..++.++.+.|+..+|.+.|+...+ .|+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 445566677888888888888777664 34777888888888888888888888887654 38888776544
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.41 E-value=0.27 Score=31.28 Aligned_cols=140 Identities=9% Similarity=0.053 Sum_probs=85.1
Q ss_pred HhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHH
Q 041259 21 CIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAI 100 (257)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 100 (257)
.-.|..++..++..+.... .+..-||.+|.-....-+-+-..++++.+=+. -|.. ..|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence 4467777778877777664 34555666666555555555555555554321 1211 224444444
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcC
Q 041259 101 DYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVG 180 (257)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (257)
..+-.+- .+...+...+..+...|.-++-.+++..+... ..|++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4443332 23344556677777777777777777775442 34567777777778888888888888888777777
Q ss_pred CC
Q 041259 181 VD 182 (257)
Q Consensus 181 ~~ 182 (257)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 64
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.10 E-value=0.26 Score=29.35 Aligned_cols=62 Identities=8% Similarity=0.026 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041259 166 FKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLK 228 (257)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (257)
.-+..+-++.+......|++....+.+++|.+.+++..|.++++..+.+ ..+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3344455555555555666666666666666666666666666655543 1222334554443
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.71 E-value=0.45 Score=30.07 Aligned_cols=69 Identities=9% Similarity=0.075 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHcccCH---HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 146 MIPDTTAYTALIDGYLKHESF---KEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
..|+..+--.+..++.+..+. ..+..+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344555555555555554433 356666666666543223445555666667777777777777777664
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.68 E-value=2.2 Score=37.91 Aligned_cols=147 Identities=10% Similarity=0.085 Sum_probs=94.2
Q ss_pred HHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhC----CC---------------
Q 041259 86 LIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKR----DM--------------- 146 (257)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--------------- 146 (257)
++..+...+..+.+.++...... +...--.+..++...|++++|...|.+.... +.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44555556666666665544432 3333345667888899999999999875321 00
Q ss_pred ---CCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC--cc--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc
Q 041259 147 ---IPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVD--LD--LNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD 219 (257)
Q Consensus 147 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (257)
..-..-|..++..+.+.+.++.+.++-+...+.... ++ ...|..+.+.+...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 001234667777888888888888877766653221 11 22578888889999999999888877766533 3
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 041259 220 EILCISLLKKHYERGNMDEA 239 (257)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~a 239 (257)
......|+...++.|..+.-
T Consensus 971 ~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHhCCChhhh
Confidence 45667777777766655443
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.44 E-value=1.4 Score=37.93 Aligned_cols=87 Identities=8% Similarity=0.008 Sum_probs=36.2
Q ss_pred HHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCH-H
Q 041259 159 GYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNM-D 237 (257)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~ 237 (257)
+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.++++.+...+ .|..+.-..+..+....|+. .
T Consensus 569 AyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~ 646 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQ 646 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCH
T ss_pred HhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcH
Confidence 3445555555555555555431 1122222222223333444444444444443332 33333333333444444333 3
Q ss_pred HHHHHHHHHH
Q 041259 238 EAIELQNEMM 247 (257)
Q Consensus 238 ~a~~~~~~m~ 247 (257)
++..++..+.
T Consensus 647 ~aid~L~~L~ 656 (963)
T 4ady_A 647 SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 4555555554
No 244
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=94.06 E-value=0.66 Score=29.36 Aligned_cols=60 Identities=8% Similarity=0.059 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041259 168 EALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLK 228 (257)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (257)
+..+-++.+......|++......+++|.+.+++..|.++|+-.+.+ ..+....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44445555555566667777777777777777777777777666654 2233445555544
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.66 E-value=0.63 Score=27.77 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=22.2
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 041259 98 EAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMP 142 (257)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (257)
++.+-+..+....+.|++....+.+++|.+.+++..|.++|+.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444445555555555555555555555555555443
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.41 E-value=1.1 Score=29.64 Aligned_cols=129 Identities=13% Similarity=0.056 Sum_probs=66.4
Q ss_pred CCCCCChhh--HHHHHHHHHhcCChhhHHHHHHHHHHcC-CCccH-------HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041259 4 KNIKADLPL--YGTIIWGLCIESKFEDSKLLLSEMKENG-LTANT-------VICTTLMDAYFKAGEPSEALSLLDEMLD 73 (257)
Q Consensus 4 ~g~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (257)
.|+.|-... +-.-+..+...|.++.|+-+.+.+.... ..|+. .++..+..++...+++..|...|++.++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 455554443 4445677788889999888877754321 12221 2456677788888999999999988653
Q ss_pred cC--CcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCC
Q 041259 74 SR--IEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRD 145 (257)
Q Consensus 74 ~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (257)
.. +.-+..+...+. ....... ......+...--.+..+|.+.+++++|+.+++.+..+.
T Consensus 92 ~~k~l~k~~s~~~~~~---~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG---NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred HHHHHhcCCCcccccc---ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 21 111111111110 0000000 00112334444457778888888888888888876553
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.99 E-value=1.1 Score=28.69 Aligned_cols=72 Identities=8% Similarity=0.062 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHcccC---HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcH
Q 041259 147 IPDTTAYTALIDGYLKHES---FKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDE 220 (257)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (257)
.|+..+--.+..++.++.+ ..++..+++.+.+.+..-.....-.+.-++.+.|++++|.+..+.+++. .|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 4566666666666666654 4467778887777554334555566677888888888888888888874 5554
No 248
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.92 E-value=1.9 Score=33.64 Aligned_cols=61 Identities=8% Similarity=-0.063 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKEN--GLTANTVICTTLMDAYFKAGEPSEALSLLDEML 72 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (257)
+...+...+.+.|+++.|.+.+.++... +...-...+-.+++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445666677777777777777777654 223334556666677777777777777776664
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.63 E-value=0.96 Score=32.52 Aligned_cols=114 Identities=14% Similarity=0.079 Sum_probs=65.3
Q ss_pred HHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC--ccHHHHHHHHHHHHhcCcH
Q 041259 124 GLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVD--LDLNAYTSLVWGLSRCGHL 201 (257)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~ 201 (257)
...+.|.+++++.....-.+..+. |...-..+++.+|-.|+|+.|.+-++...+.... |....|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 445677778887777777776555 7777777778888888888888777777665322 222334444433
Q ss_pred HHHHHHHHHHHhCCCCC-----cHHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 041259 202 QEARVLFHEMIGRGILP-----DEILCISLLKKHY--ERGNMDEAIELQNEMMG 248 (257)
Q Consensus 202 ~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~ 248 (257)
+..-.+....+-.| ...-...++.+.. ..|+.++|.++-.+..+
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 11112222222222 1222334444443 45788887777777654
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.52 E-value=0.61 Score=30.78 Aligned_cols=113 Identities=8% Similarity=0.032 Sum_probs=54.9
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhCC-CCCCH-------HHHHHHHHHHHcccCHHHHHHHHHHHHHcC--CCccHHHHHH
Q 041259 121 LIDGLCKKNCIERARNLFDEMPKRD-MIPDT-------TAYTALIDGYLKHESFKEALNLKNRMTEVG--VDLDLNAYTS 190 (257)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 190 (257)
-+..+...+.++.|+-+.+.+.... ..|+. .++..+..++...+++..|...|++..+.. +.-+..+...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3556666777777766665543221 11221 245556666777777777777777654321 1101111100
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041259 191 LVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEM 246 (257)
Q Consensus 191 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 246 (257)
+. ... .... ......+...-..+..+|.+.|++++|+.+++.+
T Consensus 106 ~~---~~s-s~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 106 TG---NSA-STPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cc---ccC-CCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 00 000 0000 0011223344445777888888888888887754
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.43 E-value=1.3 Score=28.06 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=33.0
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 041259 98 EAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALI 157 (257)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (257)
+..+-+..+....+.|++....+.+++|.+.+++..|.++|+.+..+- .+....|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 344445555555556666666666666666666666666666655442 22233444444
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.96 E-value=3.7 Score=32.20 Aligned_cols=189 Identities=11% Similarity=0.073 Sum_probs=114.3
Q ss_pred CChhhHHHHHHHHHHc-----CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCcccHHHHHHHHHH----HHhc
Q 041259 24 SKFEDSKLLLSEMKEN-----GLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS-RIEVTVVTFCVLIDG----LCKS 93 (257)
Q Consensus 24 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~----~~~~ 93 (257)
|+++.|.+.+-.+.+. +..........++..|...++++...+.+.-+.+. |..+ .....+++. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 6788888877666542 23445667788888899999999888877766543 3222 222333332 2223
Q ss_pred Cc--HHHHHHHHHhcc---cCCCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHhhhC--CCCCC---HHHHHHHHHHH
Q 041259 94 GL--VREAIDYFGRMP---DFGLHP---NVAVYTALIDGLCKKNCIERARNLFDEMPKR--DMIPD---TTAYTALIDGY 160 (257)
Q Consensus 94 ~~--~~~a~~~~~~~~---~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 160 (257)
.. .+.-..+.+.+. ...+.. .......|...+...|++.+|..++..+... +.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 222333333332 111112 1233456778888889999999988887532 22111 34566777888
Q ss_pred HcccCHHHHHHHHHHHHH----cCCCcc--HHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 161 LKHESFKEALNLKNRMTE----VGVDLD--LNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 888999998888887642 222222 234566677777778888887777666653
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.55 E-value=4.1 Score=31.93 Aligned_cols=188 Identities=11% Similarity=0.067 Sum_probs=98.4
Q ss_pred CChHHHHHHHHHHHh-----cCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhccc-CCCCCCHHHHHHHHHH----HHhc
Q 041259 59 GEPSEALSLLDEMLD-----SRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPD-FGLHPNVAVYTALIDG----LCKK 128 (257)
Q Consensus 59 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~----~~~~ 128 (257)
++++.|++.+..+.+ .....+......++..|...++++...+.+..+.+ .|..+ .....++.. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 455666655544432 12233455566677777777777777666655532 22212 222233332 2222
Q ss_pred C--cHHHHHHHHHHhhh--CC-CCC---CHHHHHHHHHHHHcccCHHHHHHHHHHHHHc--CCCcc---HHHHHHHHHHH
Q 041259 129 N--CIERARNLFDEMPK--RD-MIP---DTTAYTALIDGYLKHESFKEALNLKNRMTEV--GVDLD---LNAYTSLVWGL 195 (257)
Q Consensus 129 ~--~~~~a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~ 195 (257)
. +.+.-..+.+.... .| +.. .......|...+...|++.+|.+++..+... +.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2 23333344443321 11 111 1233455667777778888887777776532 11111 34566667777
Q ss_pred HhcCcHHHHHHHHHHHHh----CCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 196 SRCGHLQEARVLFHEMIG----RGILPDE--ILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~----~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
...+++.+|..++.++.. ....|+. ..+...+..+...+++.+|.+.|.+..+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 777888887777776542 1112221 2344555566667777777776666543
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.95 E-value=3.6 Score=32.05 Aligned_cols=97 Identities=10% Similarity=-0.074 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc--CCcccHHHHHHHHHHHHhcCcHHHHHHHHHhccc---CCCCCCHHH--HH
Q 041259 47 ICTTLMDAYFKAGEPSEALSLLDEMLDS--RIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPD---FGLHPNVAV--YT 119 (257)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~--~~ 119 (257)
+...+...|.+.|+++.|.+.+.++... +...-...+-..++.+...+++..+...+.+... .+-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4567888888899999999999888753 2233456677788888888898888888877642 221222211 01
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhhh
Q 041259 120 ALIDGLCKKNCIERARNLFDEMPK 143 (257)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~ 143 (257)
.-...+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111223456788888777766543
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.71 E-value=4.6 Score=31.03 Aligned_cols=129 Identities=13% Similarity=0.042 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHc-CCCc---cHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCcccHHHH----
Q 041259 13 YGTIIWGLCIESKFEDSKLLLSEMKEN-GLTA---NTVICTTLMDAYFKAG-EPSEALSLLDEMLDSRIEVTVVTF---- 83 (257)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~---- 83 (257)
...|...|.+.|+.++..+++...... +..+ .......++..+.... ..+.-.++..+..+.... ...+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 445666667777777766666655432 1111 2223455666555532 233333443333321000 11122
Q ss_pred --HHHHHHHHhcCcHHHHHHHHHhcccCCCCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHHhh
Q 041259 84 --CVLIDGLCKSGLVREAIDYFGRMPDFGLHPN-----VAVYTALIDGLCKKNCIERARNLFDEMP 142 (257)
Q Consensus 84 --~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (257)
..++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2456666777777777666666543211111 2234444556666677777776666553
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.67 E-value=2.1 Score=27.05 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=37.2
Q ss_pred CccHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccC
Q 041259 42 TANTVICTTLMDAYFKAGE---PSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDF 109 (257)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 109 (257)
.|+..+--.+..++++..+ ..+++.+++++.+.+..-....+-.+.-++.+.|+++.|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3455544444445555543 3356666666665442223444455556666666666666666666554
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.55 E-value=8 Score=33.52 Aligned_cols=152 Identities=9% Similarity=0.099 Sum_probs=76.7
Q ss_pred HhcCcHHHHHHHHHhcccCCCCCCHHHHH--HHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHH
Q 041259 91 CKSGLVREAIDYFGRMPDFGLHPNVAVYT--ALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKE 168 (257)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (257)
...|+.+.+..+.+.+.... .|....-. ++.-+|+..|+.....++++.+.... ..+..-...+.-+....|+.+.
T Consensus 535 l~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 535 INYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 34556666666655554421 22222221 22335566777766666777776542 2233333333334445666666
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcH-HHHHHHHHHHHhCCCCCcHHHHHHHHH--HHHhcCCHHH----HHH
Q 041259 169 ALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHL-QEARVLFHEMIGRGILPDEILCISLLK--KHYERGNMDE----AIE 241 (257)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~----a~~ 241 (257)
+.++++.+.+.+ .|....-..+.-+....|.. .++..++..+... ++..+-...+. +..-.|..+. ..+
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~ 688 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVAD 688 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHH
Confidence 667766665543 34444444444444444443 5777788887653 34443333333 3444444443 555
Q ss_pred HHHHHHh
Q 041259 242 LQNEMMG 248 (257)
Q Consensus 242 ~~~~m~~ 248 (257)
+.+++.+
T Consensus 689 ~l~~L~~ 695 (963)
T 4ady_A 689 INKNFLS 695 (963)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 258
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=90.51 E-value=3 Score=28.53 Aligned_cols=59 Identities=20% Similarity=0.139 Sum_probs=45.0
Q ss_pred ccCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHH
Q 041259 163 HESFKEALNLKNRMTEVGVDL-DLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEI 221 (257)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (257)
.++..++.++|..|...|+-- -...|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 445678888888888776542 35667888888888899999999998888887777544
No 259
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.97 E-value=6.6e-05 Score=58.22 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 041259 10 LPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDG 89 (257)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 89 (257)
...|..|..+..+.+++.+|++-|-+. -|+..|..++.+..+.|.+++-+++++..++... ++..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 345666777777777777666544221 2445567777777788888888777766655422 33444567778
Q ss_pred HHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 041259 90 LCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEM 141 (257)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 141 (257)
|++.++..+..+++ . .|+..-...+..-|...|.++.|.-+|..+
T Consensus 126 yAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 88877765443222 1 244444455666666666666666555544
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.30 E-value=2.3 Score=25.34 Aligned_cols=15 Identities=7% Similarity=-0.002 Sum_probs=6.8
Q ss_pred ChhhHHHHHHHHHHc
Q 041259 25 KFEDSKLLLSEMKEN 39 (257)
Q Consensus 25 ~~~~a~~~~~~~~~~ 39 (257)
..++|..+-+.+...
T Consensus 21 ~HqEA~tIAdwL~~~ 35 (115)
T 2uwj_G 21 CHEEALCIAEWLERL 35 (115)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC
Confidence 344444444444443
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.19 E-value=4.8 Score=28.99 Aligned_cols=120 Identities=11% Similarity=0.036 Sum_probs=72.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--cccHHHHHHHHHHHHhcC
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRI--EVTVVTFCVLIDGLCKSG 94 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~ 94 (257)
+..+.+.|++++|++....-++.. |-|...-..++..+|-.|++++|.+-++...+... .|....|..+|.+-...
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R- 81 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR- 81 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH-
Confidence 345678899999999888877764 67888888899999999999999998888876532 22233455454432211
Q ss_pred cHHHHHHHHHhcccCCC-CCCHHHHHHHHHHHH--hcCcHHHHHHHHHHhhh
Q 041259 95 LVREAIDYFGRMPDFGL-HPNVAVYTALIDGLC--KKNCIERARNLFDEMPK 143 (257)
Q Consensus 95 ~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 143 (257)
.++|.--..-++ .....-...++.+.. ..|+.++|..+-..+.+
T Consensus 82 -----~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 82 -----KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp -----HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 012221111011 112223334444443 46888888877776644
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.91 E-value=2.4 Score=25.23 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=20.7
Q ss_pred HHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCC
Q 041259 55 YFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFG 110 (257)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 110 (257)
+...|++++|..+.+.+ ..||...|..|... +.|..+.+...+.++..+|
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 34445555554443322 13444444333322 3344444444444444433
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.70 E-value=2.5 Score=25.13 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=41.4
Q ss_pred cCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHH
Q 041259 128 KNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVL 207 (257)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 207 (257)
..+.++|..+-+.+...+. ...+-.+-+..+...|++++|..+.+.. ..||...|..+- -.+.|--+++...
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~r 90 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRR 90 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHH
Confidence 3456666666666655432 1111112223445666777766654432 245655555443 2356666666666
Q ss_pred HHHHHhCC
Q 041259 208 FHEMIGRG 215 (257)
Q Consensus 208 ~~~~~~~~ 215 (257)
+.++...|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 65555554
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.42 E-value=2.7 Score=25.07 Aligned_cols=80 Identities=13% Similarity=0.155 Sum_probs=39.8
Q ss_pred cCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHH
Q 041259 128 KNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVL 207 (257)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 207 (257)
..+.++|..+-+.+...+. ...+-.+-+..+...|++++|..+.+.. ..||...|.++-. .+.|--+++...
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHH
Confidence 3455666666666555432 1111112223445566666666654432 2456555544432 355666666655
Q ss_pred HHHHHhCC
Q 041259 208 FHEMIGRG 215 (257)
Q Consensus 208 ~~~~~~~~ 215 (257)
+.++...|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 55555443
No 265
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=87.29 E-value=5.6 Score=27.55 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=11.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENG 40 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~ 40 (257)
+...++.|+.+.+..+++.+.+.|
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 333444555555555555444444
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=86.39 E-value=1.9 Score=30.82 Aligned_cols=218 Identities=9% Similarity=0.030 Sum_probs=105.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCccHH---HHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHH--HHHHHH
Q 041259 14 GTIIWGLCIESKFEDSKLLLSEMKENGLTANTV---ICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVT--FCVLID 88 (257)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~ 88 (257)
++.+...++.|+++.+..+ .+.|..++.. .-.+.+...+..|+.+- ++.+.+.|..++... -.+.+.
T Consensus 6 ~~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHH
T ss_pred chHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHH
Confidence 3456667788887655444 4555443321 11234555667777654 444455554443211 112344
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHH------------HH
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPN---VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTT------------AY 153 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~ 153 (257)
..+..|+.+-+..+++. |..++ ..-+ +.+...+..|+.+-+..+++. |..++.. .-
T Consensus 78 ~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~~~~~~~~~~~g 148 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSK----GADVNECDFYGF-TAFMEAAVYGKVKALKFLYKR----GANVNLRRKTKEDQERLRKGG 148 (285)
T ss_dssp HHHHHTCHHHHHHHHHT----TCCTTCBCTTCC-BHHHHHHHTTCHHHHHHHHHT----TCCTTCCCCCCHHHHHTTCCC
T ss_pred HHHHcCCHHHHHHHHHc----CCCCCccCcccC-CHHHHHHHhCCHHHHHHHHHh----CCCcccccccHHHHHhhccCC
Confidence 44556777655555543 33332 2112 234445566776655555544 3332211 00
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHH--HHHHHH
Q 041259 154 TALIDGYLKHESFKEALNLKNRMTEVGVDLD---LNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEIL--CISLLK 228 (257)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~ 228 (257)
...+...+..|+.+-+..+++. .|..++ ....+.+.. .+..++.....++++.+.+.|..++... -.+.+.
T Consensus 149 ~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 149 ATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 1233344556676555544432 143332 222333333 3445665555667777778877655421 123445
Q ss_pred HHHhcCCHHHHHHHHHHHHh-CCCCCCCC
Q 041259 229 KHYERGNMDEAIELQNEMMG-RGLLSGSK 256 (257)
Q Consensus 229 ~~~~~g~~~~a~~~~~~m~~-~~~~~~~~ 256 (257)
..++.|+.+- ++.+.+ .|..++.+
T Consensus 225 ~A~~~~~~~~----v~~Ll~~~g~~~~~~ 249 (285)
T 1wdy_A 225 LAVEKKHLGL----VQRLLEQEHIEINDT 249 (285)
T ss_dssp HHHHTTCHHH----HHHHHHSSSCCTTCC
T ss_pred HHHHcCCHHH----HHHHHhccCCCcccc
Confidence 5566777654 444444 56666543
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.37 E-value=9.6 Score=29.30 Aligned_cols=92 Identities=17% Similarity=0.049 Sum_probs=51.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCc-----ccHHHHHHHHHHHHhcCcHHHHHHHHHhcccC--CCCCCHHHHHHH-
Q 041259 50 TLMDAYFKAGEPSEALSLLDEMLDSRIE-----VTVVTFCVLIDGLCKSGLVREAIDYFGRMPDF--GLHPNVAVYTAL- 121 (257)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l- 121 (257)
.++..|...|++.+|.+++.++.+.-.. .-...+..-+..|...+++..+...+...... .+.+++..-..+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5666777777777777777777653111 11344555566677777777777777665421 122333222211
Q ss_pred ---HHHHH-hcCcHHHHHHHHHHh
Q 041259 122 ---IDGLC-KKNCIERARNLFDEM 141 (257)
Q Consensus 122 ---~~~~~-~~~~~~~a~~~~~~~ 141 (257)
...+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 22334 567777776666554
No 268
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.35 E-value=13 Score=30.66 Aligned_cols=116 Identities=11% Similarity=0.059 Sum_probs=72.9
Q ss_pred CcHHHHHHHHHHhhhCCCCCCHHH----HHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHH
Q 041259 129 NCIERARNLFDEMPKRDMIPDTTA----YTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEA 204 (257)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 204 (257)
.+.+.|...+......... +... ...+.......+...++...+....... ++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 3678888888877543322 3322 2233333444552445555555544432 3444455666666788999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041259 205 RVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMG 248 (257)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 248 (257)
...|..|..... ....-...+..++...|+.++|..+|..+.+
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999988865321 2344445577788889999999999988764
No 269
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=85.09 E-value=4.8 Score=29.08 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=5.4
Q ss_pred cccCHHHHHHHHH
Q 041259 162 KHESFKEALNLKN 174 (257)
Q Consensus 162 ~~~~~~~a~~~~~ 174 (257)
..|+.+-+..+++
T Consensus 170 ~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 170 KNGHVDMMILLLD 182 (285)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcChHHHHHHHHH
Confidence 3444444443333
No 270
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=84.80 E-value=0.0063 Score=47.61 Aligned_cols=216 Identities=14% Similarity=0.124 Sum_probs=134.1
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLID 88 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 88 (257)
|...|..+|....+.|.+++-...+...++.. .++..=+.|+.+|++.++..+..+++. .|+..-...+..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 67778999999999999999999988777653 333444689999999998766544431 245555566677
Q ss_pred HHHhcCcHHHHHHHHHhcccCC--------------------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCC
Q 041259 89 GLCKSGLVREAIDYFGRMPDFG--------------------LHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIP 148 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (257)
-|...|.++.|.-+|..+.... --.++.||..+-.+|...+.+.-|...--.+.-
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv----- 227 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----- 227 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----
Confidence 7777777777766665442110 023566788888888888877766443222221
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-CCCC------cHH
Q 041259 149 DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR-GILP------DEI 221 (257)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~ 221 (257)
...-...++..|-..|.+++.+.+++..... -+.....|+-|.-.|++- ++++..+.++..-.+ +++- ...
T Consensus 228 hadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 228 HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 1112234556677788888888888776643 234667777777777764 455544444322221 1110 233
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 041259 222 LCISLLKKHYERGNMDEAI 240 (257)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~ 240 (257)
.|.-++-.|..-.++|.|.
T Consensus 306 LW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHhcchhHHHHH
Confidence 4666666666666666554
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.17 E-value=3.1 Score=29.69 Aligned_cols=225 Identities=16% Similarity=0.087 Sum_probs=108.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCccHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccH---HHHHHHHHH
Q 041259 15 TIIWGLCIESKFEDSKLLLSEMKENGLTANTV--ICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTV---VTFCVLIDG 89 (257)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~ 89 (257)
+.+...+..|+.+ +++.+.+.|..++.. .-.+.+...+..|+.+ +++.+.+.|..++. .-+ ..+..
T Consensus 41 t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~-t~L~~ 111 (285)
T 1wdy_A 41 TPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIAGSVK----LLKLFLSKGADVNECDFYGF-TAFME 111 (285)
T ss_dssp CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCTTCBCTTCC-BHHHH
T ss_pred cHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCccCcccC-CHHHH
Confidence 3455556677754 455555666544321 1123344455666654 44445555554432 222 23444
Q ss_pred HHhcCcHHHHHHHHHhcccCCCCCC--------HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 041259 90 LCKSGLVREAIDYFGRMPDFGLHPN--------VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYL 161 (257)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (257)
.+..|+.+-+..+++.-........ ...-...+...+..|+.+-+..+++.....--..+..-.+.+..+ .
T Consensus 112 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~ 190 (285)
T 1wdy_A 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-L 190 (285)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-H
T ss_pred HHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-H
Confidence 5566777665555544322111100 000113455556678877666666542111011122223333333 3
Q ss_pred cccCHHHHHHHHHHHHHcCCCccHHH--HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHhcCCH
Q 041259 162 KHESFKEALNLKNRMTEVGVDLDLNA--YTSLVWGLSRCGHLQEARVLFHEMIGRGILPD---EILCISLLKKHYERGNM 236 (257)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 236 (257)
..++.....++++.+.+.|..++... -...+...+..|+.+-+..+++. .|..++ ....+ .+....+.|..
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t-~l~~A~~~~~~ 266 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKT-ALLLAVELKLK 266 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCC-HHHHHHHTTCH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCc-HHHHHHHcCcH
Confidence 44554455667777777776654321 12334445566776654444331 454443 22233 33344556665
Q ss_pred HHHHHHHHHHHhCCCCCCCCC
Q 041259 237 DEAIELQNEMMGRGLLSGSKN 257 (257)
Q Consensus 237 ~~a~~~~~~m~~~~~~~~~~~ 257 (257)
+ +.+.+.+.|..|+.++
T Consensus 267 ~----i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 267 K----IAELLCKRGASTDCGD 283 (285)
T ss_dssp H----HHHHHHHHSSCSCCSS
T ss_pred H----HHHHHHHcCCCCCccc
Confidence 4 4556677788887653
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.99 E-value=8.2 Score=26.42 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhcCCcc-cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCC
Q 041259 61 PSEALSLLDEMLDSRIEV-TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPN 114 (257)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 114 (257)
..++..+|..|...|+-. -...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 456666666665544322 234455555566666666666666666655554453
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=82.97 E-value=7.5 Score=25.24 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHH
Q 041259 169 ALNLKNRMTEVGVDL-DLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEI 221 (257)
Q Consensus 169 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (257)
+.++|..|...|+-. -...|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 566666666655432 34456666666667777777777777666665555443
No 274
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=79.76 E-value=16 Score=26.97 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 041259 13 YGTIIWGLCIESKFEDSKLLLSEMK 37 (257)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~ 37 (257)
...+|.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4568889999999999999888764
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=79.49 E-value=18 Score=27.38 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCC
Q 041259 187 AYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGN--MDEAIELQNEMMGRGLLS 253 (257)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~ 253 (257)
....++.-|...|+.++|.+.++++..-.+. .......+..++-+.++ .+...+++..+...|+.+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 3567777777888888888888777532111 12233444444444332 345777777777766544
No 276
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=77.53 E-value=16 Score=25.73 Aligned_cols=21 Identities=19% Similarity=0.080 Sum_probs=12.4
Q ss_pred HHHHHhcCChhhHHHHHHHHH
Q 041259 17 IWGLCIESKFEDSKLLLSEMK 37 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~ 37 (257)
+..+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 445555666666666666554
No 277
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=77.40 E-value=5 Score=25.40 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=40.8
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcH
Q 041259 35 EMKENGLTANTVICTTLMDAYFKAG-EPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLV 96 (257)
Q Consensus 35 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (257)
.+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 355677666654 344555565555 6777888888888776666777777777777776654
No 278
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=76.76 E-value=2.3 Score=30.78 Aligned_cols=189 Identities=8% Similarity=-0.034 Sum_probs=77.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcH
Q 041259 52 MDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCI 131 (257)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (257)
+...+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+..+++.-.... .++..-. +.+...+..|+.
T Consensus 35 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~-t~L~~A~~~g~~ 108 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDS-QFDDKGN-TALYYAVDSGNM 108 (285)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTT-CCCTTSC-CHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCC-cHHHHHHHcCCH
Confidence 34445566665444333 33333322211234455556677665555554321111 0111111 223344556776
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 041259 132 ERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDL-DLNAYTSLVWGLSRCGHLQEARVLFHE 210 (257)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 210 (257)
+-+..+++.-...... +..-+...+...+..|+.+-+..+ .+.|..+ +...-...+...+..|+.+-+..+++.
T Consensus 109 ~~v~~Ll~~ga~~~~~-~~~g~~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 109 QTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYF----LSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHHHCGGGGGC-SSSGGGSHHHHHHHTTCHHHHHHH----HTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcc-CCCCCCCHHHHHHHcCCHHHHHHH----HhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 6665555542211111 111112233334455665444333 3333322 110222334444566777666665554
Q ss_pred HHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCC
Q 041259 211 MIGRGILPDEILCISLLKKHYERGNMDEAIELQNEMMGRGLLSGSK 256 (257)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 256 (257)
-..-... +..-.+..+...+..|+. ++.+.+.+.|..|+.+
T Consensus 184 gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 184 MTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTT
T ss_pred CCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCC
Confidence 3332111 111111112223334443 3444556666666554
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=76.63 E-value=22 Score=26.90 Aligned_cols=95 Identities=12% Similarity=0.121 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 041259 152 AYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGH--LQEARVLFHEMIGRGILPDEILCISLLKK 229 (257)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (257)
....++.-|...++.++|.+.++++...... .......+..++-+.++ .+....++..+...|+-+.......+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3577788888888999998888887643322 23444555555554433 45677778778777765555444444443
Q ss_pred HHhcC----CHHHHHHHHHHHH
Q 041259 230 HYERG----NMDEAIELQNEMM 247 (257)
Q Consensus 230 ~~~~g----~~~~a~~~~~~m~ 247 (257)
+.... +...|..++.++.
T Consensus 298 l~~ldDl~lDiP~A~~~la~~v 319 (358)
T 3eiq_C 298 YNEIPDINLDVPHSYSVLERFV 319 (358)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHhccHhhcccccHHHHHHHHH
Confidence 33322 2334555554443
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=76.49 E-value=13 Score=25.94 Aligned_cols=55 Identities=13% Similarity=0.043 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHH
Q 041259 167 KEALNLKNRMTEVGVDL-DLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEI 221 (257)
Q Consensus 167 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (257)
+.+.++|..|...|+-- -...|......+...|++.+|..+|+.-++.+-.|-..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 35667888887776542 35567777888888888888888888888776666443
No 281
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=76.42 E-value=13 Score=23.91 Aligned_cols=69 Identities=13% Similarity=0.052 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHhcCc---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcC
Q 041259 112 HPNVAVYTALIDGLCKKNC---IERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVG 180 (257)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (257)
.|+..+--.+.-++.+..+ ..+++.+++++...+..-.......+.-++.+.|+++.|.+..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4555555555556665543 44677777777765433233445556667788888888888888887753
No 282
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.14 E-value=21 Score=26.41 Aligned_cols=163 Identities=12% Similarity=0.051 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHhcCCcc-cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHH---
Q 041259 61 PSEALSLLDEMLDSRIEV-TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARN--- 136 (257)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--- 136 (257)
.++.+.-++.-++.|--- -...|.++..-|.+.+++++|.+++.. -...+.+.|+...|-+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~---------------ga~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ---------------GALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHH
Confidence 445555555555554111 234566777777777777777776543 1234456677766655
Q ss_pred -HHHHhhhCCCCCCHHHHHHHHHHHHcccCHH-HHHHHHHHHH----HcC--CCccHHHHHHHHHHHHhcCcHHHHHHHH
Q 041259 137 -LFDEMPKRDMIPDTTAYTALIDGYLKHESFK-EALNLKNRMT----EVG--VDLDLNAYTSLVWGLSRCGHLQEARVLF 208 (257)
Q Consensus 137 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 208 (257)
+++...+.+..++......++..+.....-+ .-.++++.+. +.| ..-++.....+...|.+.|++.+|+..|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4566677788889888888888876633211 1123333333 222 2347788899999999999999998876
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHhc---CCHHHHHHH
Q 041259 209 HEMIGRGILPDEILCISLLKKHYER---GNMDEAIEL 242 (257)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~ 242 (257)
- .|-.-+...+..++.-+... |...++--+
T Consensus 158 i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf 190 (312)
T 2wpv_A 158 M----LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF 190 (312)
T ss_dssp H----TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred H----hCCCccHHHHHHHHHHHHHhcCCCCcchHHHH
Confidence 4 22222466777776666665 766665443
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=75.56 E-value=14 Score=25.37 Aligned_cols=188 Identities=15% Similarity=0.090 Sum_probs=91.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCcccHHH--HHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHH--HHHHHHHHHH
Q 041259 51 LMDAYFKAGEPSEALSLLDEMLDSRIEVTVVT--FCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVA--VYTALIDGLC 126 (257)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 126 (257)
.+...+..|+.+.+..+++.+.+.+..++... -.+.+...+..|+.+-+..+++. |..++.. .-...+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA----GASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc----CCCccccCCCCCCHHHHHH
Confidence 34556778888888888777666554443211 12234455566777665555543 3222211 1112344455
Q ss_pred hcCcHHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHhcCc
Q 041259 127 KKNCIERARNLFDEMPKRDMIP---DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLN---AYTSLVWGLSRCGH 200 (257)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~ 200 (257)
..|+.+-+..+++.....+..+ +..-.+. +...+..|+.+-+..+ .+.|..++.. .-...+...+..|+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~L----l~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETVQLL----LERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHHHHH----HHcCCCcccccccCCCcHHHHHHHcCC
Confidence 6788877777777654221111 1111222 2233455665544444 4444433321 11223344456677
Q ss_pred HHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCC
Q 041259 201 LQEARVLFHEMIGRGILPDE---ILCISLLKKHYERGNMDEAIELQNEMMGRGLLSGSK 256 (257)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 256 (257)
.+-+..+ .+.|..++. .-.+ .+...+..|+.+ +++.+.+.|..++.+
T Consensus 163 ~~~v~~L----l~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~ga~~~~~ 212 (241)
T 1k1a_A 163 LSMVQLL----LQHGANVNAQMYSGSS-ALHSASGRGLLP----LVRTLVRSGADSSLK 212 (241)
T ss_dssp HHHHHHH----HHTTCCTTCBCTTSCB-HHHHHHHHTCHH----HHHHHHHTTCCTTCC
T ss_pred HHHHHHH----HHcCCCCCCcCCCCCC-HHHHHHHcCCHH----HHHHHHhcCCCCCCc
Confidence 6554444 445554432 2222 333345567655 444555677666643
No 284
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=75.55 E-value=7.1 Score=25.04 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=39.2
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcH
Q 041259 34 SEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLV 96 (257)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (257)
+.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3455667666554 334445555555 667888888887776666777766677777776654
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.63 E-value=15 Score=23.87 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCCcc-cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCH
Q 041259 62 SEALSLLDEMLDSRIEV-TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNV 115 (257)
Q Consensus 62 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 115 (257)
+++.++|..|...|+-. ....|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 34677777777665433 3445666677777777888888877777666655543
No 286
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=74.46 E-value=2.7 Score=29.77 Aligned_cols=56 Identities=21% Similarity=0.148 Sum_probs=34.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCccHHH-------HHHHHHHHH--hcCChHHHHHHHHHH
Q 041259 16 IIWGLCIESKFEDSKLLLSEMKENGLTANTVI-------CTTLMDAYF--KAGEPSEALSLLDEM 71 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~ 71 (257)
.+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 44556678999998888888877765555332 233333322 557766666666554
No 287
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=74.37 E-value=14 Score=25.75 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=53.0
Q ss_pred HHHHHHHHHHc-----CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcc-cHHHHHHHHHHHHhcCcHHHHHHH
Q 041259 29 SKLLLSEMKEN-----GLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEV-TVVTFCVLIDGLCKSGLVREAIDY 102 (257)
Q Consensus 29 a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~ 102 (257)
-..++++..+. ...-|..-...-+. |+.. .+.+..+|..|...|+-. -...|......+...|++.+|..+
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~-Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 172 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQ-YVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEV 172 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHH-HHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHH-HHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44566665543 13344443333332 2332 356778888888776543 345667778888888999999999
Q ss_pred HHhcccCCCCCCH
Q 041259 103 FGRMPDFGLHPNV 115 (257)
Q Consensus 103 ~~~~~~~~~~~~~ 115 (257)
|+.-++.+-.|-.
T Consensus 173 y~~Gi~~~A~P~~ 185 (223)
T 4aez_C 173 YQKGKRMKAKPFL 185 (223)
T ss_dssp HHHHHHHTCBSHH
T ss_pred HHHHHHcCCccHH
Confidence 9888776666643
No 288
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=73.31 E-value=9.4 Score=25.48 Aligned_cols=178 Identities=9% Similarity=-0.058 Sum_probs=72.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHhcC
Q 041259 53 DAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPN---VAVYTALIDGLCKKN 129 (257)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 129 (257)
...+..|+.+.+..++..-...--..+..-++ .+...+..|+.+-+..+++. |..++ .... +.+...+..|
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~-t~l~~A~~~~ 83 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDIEIAKALIDR----GADINLQNSISD-SPYLYAGAQG 83 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSC-CHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCC-CHHHHHHHcC
Confidence 34456677666655554221000011222222 33444455666655555543 22222 1111 2233445567
Q ss_pred cHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHH-HHcCCCccHHHHHHHHHHHHhcCcHHHHHHHH
Q 041259 130 CIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRM-TEVGVDLDLNAYTSLVWGLSRCGHLQEARVLF 208 (257)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 208 (257)
+.+-+..+++.-...--..+..-.+. +...+..|+.+-+..+++.- .... ..+..-.+.+..++........-.++.
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 76666655543221100112211122 22334456665544444332 1111 112223333433333322233335556
Q ss_pred HHHHhCCCCCcHHHH--HHHHHHHHhcCCHHH
Q 041259 209 HEMIGRGILPDEILC--ISLLKKHYERGNMDE 238 (257)
Q Consensus 209 ~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~ 238 (257)
+.+.+.|..++.... .+.+....+.|+.+-
T Consensus 162 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~ 193 (201)
T 3hra_A 162 KLLMENGADQSIKDNSGRTAMDYANQKGYTEI 193 (201)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHHCCCCCCccCCCCCCHHHHHHHcCCHhH
Confidence 666666665543321 123444455566543
No 289
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.57 E-value=27 Score=25.89 Aligned_cols=83 Identities=11% Similarity=0.173 Sum_probs=39.5
Q ss_pred HHhcCChHHHHHH----HHHHHhcCCcccHHHHHHHHHHHHhcCc--------HHHHHHHHHhcccCCCCCCHHHHHHHH
Q 041259 55 YFKAGEPSEALSL----LDEMLDSRIEVTVVTFCVLIDGLCKSGL--------VREAIDYFGRMPDFGLHPNVAVYTALI 122 (257)
Q Consensus 55 ~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (257)
+.+.|+...|-++ ++-+.+.+.+++......++..+..... ...|.++-...-.. -.-++.....+.
T Consensus 63 ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~-~~Gdp~LH~~~a 141 (312)
T 2wpv_A 63 FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEY-KFGDPYLHNTIG 141 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSC-TTCCHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCC-CCCCHHHHHHHH
Confidence 4445555444333 3444455666666666666655544221 11122211111110 123555566666
Q ss_pred HHHHhcCcHHHHHHHH
Q 041259 123 DGLCKKNCIERARNLF 138 (257)
Q Consensus 123 ~~~~~~~~~~~a~~~~ 138 (257)
..|.+.+++.+|...|
T Consensus 142 ~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 142 SKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHhhcCCHHHHHHHH
Confidence 6677777766666554
No 290
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=72.14 E-value=16 Score=23.31 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=27.0
Q ss_pred HHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 041259 71 MLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKN 129 (257)
Q Consensus 71 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (257)
+.+.|.+++..- ..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 444555544322 22333333334 4456666666655543444444444455555544
No 291
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=71.97 E-value=16 Score=23.42 Aligned_cols=18 Identities=17% Similarity=0.086 Sum_probs=9.9
Q ss_pred HHHHHhcCcHHHHHHHHH
Q 041259 87 IDGLCKSGLVREAIDYFG 104 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~ 104 (257)
+...++.|+.+.+..+++
T Consensus 12 l~~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHHHTCHHHHHHHCC
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 334445567666655554
No 292
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=71.54 E-value=29 Score=25.96 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCcc
Q 041259 13 YGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKA-GEPSEALSLLDEMLDSRIEV 78 (257)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~ 78 (257)
...++.-|...|+.++|.+.++++..-.. ....+...+..++-+. ...+.+..++..+.+.++-+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 46788889999999999988887742111 0111222222222221 12345666667776665443
No 293
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.43 E-value=19 Score=23.72 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHH
Q 041259 169 ALNLKNRMTEVGVDL-DLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILC 223 (257)
Q Consensus 169 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (257)
+.++|..|...|+-. -...|......+...|++.+|.++|..-++.+..|-...-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~ 134 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQ 134 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 666788887776543 3556777788888889999999999888888777766543
No 294
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=70.46 E-value=21 Score=23.80 Aligned_cols=133 Identities=9% Similarity=-0.054 Sum_probs=57.0
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhCCCCCCHH---HHHHHHHHH-HcccCHHHHHHHHHHHHHcCCCccHH---HHHHHHH
Q 041259 121 LIDGLCKKNCIERARNLFDEMPKRDMIPDTT---AYTALIDGY-LKHESFKEALNLKNRMTEVGVDLDLN---AYTSLVW 193 (257)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~ 193 (257)
.+...+..|+.+.-.++.+.+.+.|..++.. -.+.|..++ ....+.....++.+.+.+.|..++.. -.+..+.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh 120 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTG
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHH
Confidence 3344444555544444555555555444321 112222221 11233444456666666666554432 1101222
Q ss_pred HHHhcCcH-HHHHHHHHHHHh-CCCCCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041259 194 GLSRCGHL-QEARVLFHEMIG-RGILPDEI---LCISLLKKHYERGNMDEAIELQNEMMGRGLLSG 254 (257)
Q Consensus 194 ~~~~~~~~-~~a~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 254 (257)
..+..+.. ..-..+++.+.+ .|..++.. -.+ -+....+.|..+-..-+.+.+.+.+++.+
T Consensus 121 ~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~T-pL~~A~~~~~~~~v~~L~~~~~~~~~~~~ 185 (186)
T 3t8k_A 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLT-ALEFVKRCQKPIALKMMEDYIKKYNLKEN 185 (186)
T ss_dssp GGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCC-HHHHHHTTTCHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCC-HHHHHHHcCCHHHHHHHHHHHHHHhcccC
Confidence 22223322 334456666666 66555432 222 23333455665544444444444555443
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=70.20 E-value=19 Score=23.31 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhcc
Q 041259 84 CVLIDGLCKSGLVREAIDYFGRMP 107 (257)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~~~ 107 (257)
..++.-|...|+.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344555555555555555555543
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=70.18 E-value=26 Score=24.71 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=49.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhC--CCCC----CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 041259 121 LIDGLCKKNCIERARNLFDEMPKR--DMIP----DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWG 194 (257)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 194 (257)
-++.+....++++|..++++..+. +..+ ........+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 467778888888888888765432 1111 111222223333333333334444444422 3345556666677
Q ss_pred HHhcCcHHHHHHHHHHHHh
Q 041259 195 LSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~ 213 (257)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7778888888887766554
No 297
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=69.87 E-value=19 Score=23.15 Aligned_cols=62 Identities=11% Similarity=0.261 Sum_probs=39.5
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcH
Q 041259 34 SEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLV 96 (257)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (257)
+.+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3456667655443 3455566666666778888888887776666666666667777666643
No 298
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.82 E-value=21 Score=23.53 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCcc-cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCH
Q 041259 63 EALSLLDEMLDSRIEV-TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNV 115 (257)
Q Consensus 63 ~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 115 (257)
.+..+|..|...|+-. -...|......+...|++.+|.++|..-++.+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 3566677776655433 3345556666677777777777777777666655644
No 299
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=69.58 E-value=29 Score=26.00 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHhhhCCCC
Q 041259 83 FCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKK-NCIERARNLFDEMPKRDMI 147 (257)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~ 147 (257)
...++.-|...|+.++|...++++..... ....+...+..++-+. ...+.+..++..+.+.++-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 46678888888999999998888864221 1122222222222221 1234455666666665544
No 300
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.31 E-value=33 Score=25.68 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 041259 148 PDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGL 195 (257)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 195 (257)
-++.....+...|.+.+++.+|..-|- .|-.+++..+..++.-+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 356666777777777788777776552 23333445554444433
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.73 E-value=60 Score=28.42 Aligned_cols=108 Identities=18% Similarity=0.016 Sum_probs=63.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCC------------------
Q 041259 121 LIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVD------------------ 182 (257)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 182 (257)
++..+...+..+-|.++...+.. +...--.+.++|...|++++|...|++... |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-----t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-----SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 44555566666666554433332 333334567788889999999998886431 111
Q ss_pred -----ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcH----HHHHHHHHHHHhcC
Q 041259 183 -----LDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDE----ILCISLLKKHYERG 234 (257)
Q Consensus 183 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 234 (257)
....-|..++..+-+.+-++-+..+.+..++.--..|. ..|..++++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 01225677777788888888888777777754111122 24555666555443
No 302
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=68.72 E-value=20 Score=23.02 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=17.2
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 041259 195 LSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERG 234 (257)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (257)
+...+..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 36 l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 36 LYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333334445555555544433334444444444444443
No 303
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=68.71 E-value=25 Score=23.97 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=24.0
Q ss_pred HhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC
Q 041259 56 FKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSG 94 (257)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (257)
.+..+.+.|+-++-+|++.|-.|.-..-..++-+...-|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 345677777777777777776655444444555544433
No 304
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=67.59 E-value=19 Score=23.61 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=42.3
Q ss_pred hhHHHHHH-HHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCcccHHHHHHHHHHHHhcCcH
Q 041259 27 EDSKLLLS-EMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDS--RIEVTVVTFCVLIDGLCKSGLV 96 (257)
Q Consensus 27 ~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~ 96 (257)
+.+.+-+. .+.+.|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34444343 344557666543 455666666666777788888888766 5555666666666666666643
No 305
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=66.90 E-value=9.8 Score=25.39 Aligned_cols=161 Identities=12% Similarity=0.028 Sum_probs=73.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHH--HHHHHHHHHhcC
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVT--FCVLIDGLCKSG 94 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~ 94 (257)
+...+..|+.+....++..-...--..+..-++ .+...+..|+.+- ++.+.+.|..++... -...+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDIEI----AKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 344556788777776664321000011222222 3444556677544 444455554443221 112344455667
Q ss_pred cHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh-hhCCCCCCHHHHHHHHHHHHcccCHHHHHHHH
Q 041259 95 LVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEM-PKRDMIPDTTAYTALIDGYLKHESFKEALNLK 173 (257)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (257)
+.+-+..+++.....--..+..-. +.+...+..|+.+-+..+++.- ...+. .+..-.+.+..+.........-.++.
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDIDF-QNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTTC-CCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCC-CCCCCCCHHHHHHHhccchhhHHHHH
Confidence 877776666443211001111111 2234455677877776666654 22111 12222333433333322233335566
Q ss_pred HHHHHcCCCcc
Q 041259 174 NRMTEVGVDLD 184 (257)
Q Consensus 174 ~~~~~~~~~~~ 184 (257)
+.+.+.|..++
T Consensus 162 ~~Ll~~ga~~~ 172 (201)
T 3hra_A 162 KLLMENGADQS 172 (201)
T ss_dssp HHHHHTTCCTT
T ss_pred HHHHHCCCCCC
Confidence 66667666554
No 306
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=66.84 E-value=22 Score=22.68 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=39.5
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcH
Q 041259 34 SEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLV 96 (257)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (257)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3456667666544 3345555556666777888888887776666666666666666666543
No 307
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=66.45 E-value=28 Score=23.77 Aligned_cols=55 Identities=15% Similarity=0.319 Sum_probs=31.1
Q ss_pred HhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc-----HHHHHHHHHhcccCCC
Q 041259 56 FKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGL-----VREAIDYFGRMPDFGL 111 (257)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 111 (257)
.+..+.+.|+-++-+|++.| .|.-..-..++-+...-|. ...|...++.....|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34567777777777787777 5554444555555544443 2234444444444453
No 308
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=66.15 E-value=23 Score=22.74 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=38.5
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcH
Q 041259 34 SEMKENGLTANTVICTTLMDAYFKAG-EPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLV 96 (257)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (257)
+.+.+.|+.++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34556676665443 34445555555 5667888888887776666666666666666666644
No 309
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=66.14 E-value=25 Score=23.07 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=21.0
Q ss_pred CChhhHHHHHHHHHHcCCCc--cHHHHHHHHH-H-----HHhcCChHHHHHHHHHH
Q 041259 24 SKFEDSKLLLSEMKENGLTA--NTVICTTLMD-A-----YFKAGEPSEALSLLDEM 71 (257)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~ 71 (257)
|++=+|.++++.+-.....+ ....|..||. + ..+.|+...|..++.+.
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55555555555554432222 2333444444 1 22344555555554444
No 310
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=66.00 E-value=22 Score=22.37 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=27.9
Q ss_pred HHhcCCcccHHHHHHHHHHHHhcC-cHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCc
Q 041259 71 MLDSRIEVTVVTFCVLIDGLCKSG-LVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNC 130 (257)
Q Consensus 71 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (257)
+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 34445554432 223344444443 445566666666555434444444444555555443
No 311
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=64.73 E-value=23 Score=22.14 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=11.0
Q ss_pred HHHHHHHhcCcHHHHHHHHHHh
Q 041259 120 ALIDGLCKKNCIERARNLFDEM 141 (257)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~ 141 (257)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444555555555555554
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=64.69 E-value=25 Score=22.46 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=25.3
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 041259 176 MTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERG 234 (257)
Q Consensus 176 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (257)
+.+.|.+++..= ..++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 334444443322 2223333333444445555555554443344444444444444444
No 313
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=64.30 E-value=20 Score=21.20 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHH-----hCCCCCcHHHHHHH
Q 041259 169 ALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMI-----GRGILPDEILCISL 226 (257)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~l 226 (257)
+.++.+++...|+.|+..+..-++..|...+- + +.++.++.. ..|..|+....+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 45566666677777777777777777766553 1 333222222 23666666655543
No 314
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=63.44 E-value=24 Score=21.98 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=17.5
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC
Q 041259 54 AYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSG 94 (257)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (257)
.+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 19 ~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 19 LLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333334444444444444433334444444444444443
No 315
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=62.95 E-value=21 Score=22.62 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=23.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc
Q 041259 50 TLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGL 95 (257)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 95 (257)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444444455566666665555444455555555555555544
No 316
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=62.00 E-value=56 Score=25.63 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=30.4
Q ss_pred hcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCc-----HHHHHHHHHHhhhCCC
Q 041259 92 KSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNC-----IERARNLFDEMPKRDM 146 (257)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 146 (257)
+.++.+.|+.++.+|.+.|..|....-..+..+.-.-|. ...|...++....-|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 346778888888888777755554443344444433332 3344445555555543
No 317
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=61.92 E-value=22 Score=22.83 Aligned_cols=58 Identities=10% Similarity=0.172 Sum_probs=27.8
Q ss_pred hhCCCCCCHHHHHHHHHHHHccc-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCc
Q 041259 142 PKRDMIPDTTAYTALIDGYLKHE-SFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGH 200 (257)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 200 (257)
.+.|..++. .-..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 9 ~~~g~r~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 9 KDAGLKVTL-PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHTTCCCCH-HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 344444332 2233334444443 444566666666555544555555555555555443
No 318
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.83 E-value=61 Score=26.05 Aligned_cols=66 Identities=9% Similarity=0.007 Sum_probs=43.7
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCccHH--HH-HHHHHHHHhcCChHHHHHHHHHHHhc
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENG-LTANTV--IC-TTLMDAYFKAGEPSEALSLLDEMLDS 74 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (257)
-...+|.+++.|...+.++.|..+.....--. ..++.. .| -.+...+.-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34568888899999999999999888764210 011111 12 23445566778888898888887654
No 319
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=61.73 E-value=36 Score=23.44 Aligned_cols=64 Identities=16% Similarity=0.288 Sum_probs=39.3
Q ss_pred HHHHHHHHH---hcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCc-----HHHHHHHHHhcccCCC
Q 041259 48 CTTLMDAYF---KAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGL-----VREAIDYFGRMPDFGL 111 (257)
Q Consensus 48 ~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 111 (257)
+..+|+++. +..+.+.|+-++-+|++.|-.|.-..-..++-+...-|. ...|...++.....|.
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334555543 457888898888899888876665555555655555443 3344445555555554
No 320
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=61.51 E-value=31 Score=26.18 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHhcCc--HHHHHHHHHHhhhCCCC
Q 041259 81 VTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPN---VAVYTALIDGLCKKNC--IERARNLFDEMPKRDMI 147 (257)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 147 (257)
.....++.-|...|+.++|...++++.. |+ ......++......++ .+.+..++..+...++-
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCC
Confidence 3456788889999999999999999863 32 2223333443333332 24455666666666554
No 321
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.40 E-value=19 Score=20.08 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=30.8
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCC
Q 041259 176 MTEVGVDLDLNAYTSLVWGLSRCG-HLQEARVLFHEMIGRGILPDEILCISLLKKHYERGN 235 (257)
Q Consensus 176 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (257)
+.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 445555555433 23344444433 344556666666655444455555556666665554
No 322
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=60.54 E-value=3.1 Score=29.42 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=34.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCcccHH-------HHHHHHHHHH--hcCcHHHHHHHHHhc
Q 041259 51 LMDAYFKAGEPSEALSLLDEMLDSRIEVTVV-------TFCVLIDGLC--KSGLVREAIDYFGRM 106 (257)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~ 106 (257)
.+...++.|+.+....+++.+.+.+..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3445668899998888888777666555432 2234444432 567777776666653
No 323
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=60.10 E-value=28 Score=22.80 Aligned_cols=59 Identities=5% Similarity=0.059 Sum_probs=28.1
Q ss_pred hhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCcH
Q 041259 142 PKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEV--GVDLDLNAYTSLVWGLSRCGHL 201 (257)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~ 201 (257)
.+.|..++ ..-..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-+
T Consensus 25 ~~~g~r~T-~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYT-KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCC-HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 33444432 23334444444444555555565555554 4444444444444555555543
No 324
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=59.37 E-value=19 Score=22.87 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=26.2
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCc
Q 041259 154 TALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGH 200 (257)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 200 (257)
..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 34445554544555566666666665555555555555555555554
No 325
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=59.22 E-value=40 Score=23.06 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=15.3
Q ss_pred ccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 041259 163 HESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLS 196 (257)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 196 (257)
-.+.+.|+..+.+|.+.| .|....-..++.+..
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsE 59 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYE 59 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 345555555555555555 433333333333333
No 326
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=58.67 E-value=8.3 Score=20.35 Aligned_cols=29 Identities=7% Similarity=0.075 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 041259 27 EDSKLLLSEMKENGLTANTVICTTLMDAY 55 (257)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 55 (257)
++|.+.|.+|++..-.++..+|...+...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34445554444432223334455555444
No 327
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=58.29 E-value=27 Score=21.79 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=26.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCh
Q 041259 16 IIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEP 61 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 61 (257)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4455555555666666666666655444555555555555555543
No 328
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=57.87 E-value=41 Score=22.83 Aligned_cols=20 Identities=20% Similarity=0.296 Sum_probs=12.9
Q ss_pred HHHHHHhcCChhhHHHHHHH
Q 041259 16 IIWGLCIESKFEDSKLLLSE 35 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~ 35 (257)
.+...++.|+++....++..
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 35556667777777666654
No 329
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=57.86 E-value=42 Score=22.90 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=10.2
Q ss_pred cCcHHHHHHHHHHhhhCCCCC
Q 041259 128 KNCIERARNLFDEMPKRDMIP 148 (257)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~ 148 (257)
-.+.+.|+-.+-+|++.|-.|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 344555555555555544433
No 330
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=57.85 E-value=17 Score=25.72 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=34.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCc-------cHHHHHHHHHHHH--hcCChHHHHHHHHHH
Q 041259 15 TIIWGLCIESKFEDSKLLLSEMKENGLTA-------NTVICTTLMDAYF--KAGEPSEALSLLDEM 71 (257)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 71 (257)
+.+...++.|+.+.+..+++...+.+... +..-++.|..+.. +.|+.+-+..+++.-
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 34555667899999999998877665332 2233344444443 247766666666553
No 331
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=57.51 E-value=9.8 Score=26.15 Aligned_cols=211 Identities=14% Similarity=0.056 Sum_probs=89.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCccHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccH---HHHHHHHHHHH
Q 041259 17 IWGLCIESKFEDSKLLLSEMKENGLTANTV--ICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTV---VTFCVLIDGLC 91 (257)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~ 91 (257)
+...++.|+++....+ .+.|..++.. .-...+...+..|+.+-+.. +.+.|..++. ..-...+...+
T Consensus 13 l~~A~~~g~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~~~t~L~~A~ 84 (240)
T 3eu9_A 13 IVKATQYGIYERCREL----VEAGYDVRQPDKENVTLLHWAAINNRIDLVKY----YISKGAIVDQLGGDLNSTPLHWAT 84 (240)
T ss_dssp HHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCBTTTTBCHHHHHH
T ss_pred HHHHHHcCChHHHHHH----HHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHH----HHHcCCcchhhcCCcCCChhHHHH
Confidence 3345667776555444 4455433221 12234556677777655444 4444432221 11123344455
Q ss_pred hcCcHHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHH
Q 041259 92 KSGLVREAIDYFGRMPDFGLHPN---VAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKE 168 (257)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (257)
..|+.+-+..+++. |..++ .... ..+...+..|+.+-+..+++.-...... +..-.+.+..+... +....
T Consensus 85 ~~~~~~~v~~Ll~~----g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~a~~~-~~~~~ 157 (240)
T 3eu9_A 85 RQGHLSMVVQLMKY----GADPSLIDGEGC-SCIHLAAQFGHTSIVAYLIAKGQDVDMM-DQNGMTPLMWAAYR-THSVD 157 (240)
T ss_dssp HHTCHHHHHHHHHT----TCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHH-CCSST
T ss_pred HcCCHHHHHHHHHc----CCCCcccCCCCC-CHHHHHHHcCHHHHHHHHHhcCCCcccc-CCCCCcHHHHHHHh-CChHH
Confidence 56777665555543 22222 1111 2344445667776555555432111111 11222233333322 32222
Q ss_pred HHHHHHHHHHcCCCccHHH---HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHH--HHHHHHHHHhcCCHHHHHHHH
Q 041259 169 ALNLKNRMTEVGVDLDLNA---YTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEIL--CISLLKKHYERGNMDEAIELQ 243 (257)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~ 243 (257)
.. +.+.+.|..++... -...+...+..|+.+-+..++ +.|..++... -.+.+....+.|+.+-+.-++
T Consensus 158 ~~---~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~ 230 (240)
T 3eu9_A 158 PT---RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL----EAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230 (240)
T ss_dssp TH---HHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHH----HHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred HH---HHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 22 23333443332211 112344455667776554444 3344443211 112344456677777655555
Q ss_pred HHHHhC
Q 041259 244 NEMMGR 249 (257)
Q Consensus 244 ~~m~~~ 249 (257)
+...+.
T Consensus 231 ~~~~~~ 236 (240)
T 3eu9_A 231 EARQAK 236 (240)
T ss_dssp HHC---
T ss_pred Hhhhcc
Confidence 544333
No 332
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=57.03 E-value=37 Score=21.99 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccC--HHHHHHHHHHHHHcCCCc
Q 041259 117 VYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHES--FKEALNLKNRMTEVGVDL 183 (257)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 183 (257)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...++-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4566788888888999998888887533221 23344444445544322 445666777776666543
No 333
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=57.02 E-value=46 Score=23.16 Aligned_cols=56 Identities=16% Similarity=0.014 Sum_probs=35.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCccH-------HHHHHHHHHHHhc---CChHHHHHHHHHHH
Q 041259 16 IIWGLCIESKFEDSKLLLSEMKENGLTANT-------VICTTLMDAYFKA---GEPSEALSLLDEML 72 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---~~~~~a~~~~~~~~ 72 (257)
.+...++.|+.+.+..+++.+.+.|..++. .-.+.| ...+.. |+.+-+..+++.-.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhcCC
Confidence 455667889998888888888777755443 223333 344445 77766666665543
No 334
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=56.84 E-value=72 Score=25.28 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=50.5
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHH
Q 041259 37 KENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVA 116 (257)
Q Consensus 37 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 116 (257)
.+.|++--...|..-...+...|++++|-++.-.... |+--++.|.+.+-..=...|.....+.+|..+.+.| ..+..
T Consensus 353 ~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ 430 (494)
T 1bpo_A 353 VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKY 430 (494)
T ss_dssp HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHH
T ss_pred HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchH
Confidence 3445544455566566666677777777666544433 233355555544444444455555555555555544 33433
Q ss_pred HHHHHHHHHHhcCcHHHHHHHH
Q 041259 117 VYTALIDGLCKKNCIERARNLF 138 (257)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~ 138 (257)
----+++.-...|+.+-..+.+
T Consensus 431 ESlEl~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 431 ESLELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhhHHhHHHHhccHHHHHHHHH
Confidence 3233444444444444444333
No 335
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=56.64 E-value=36 Score=25.33 Aligned_cols=219 Identities=11% Similarity=-0.020 Sum_probs=99.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHH
Q 041259 9 DLPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVI--CTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVL 86 (257)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (257)
|..-++ .+...+..|+.+-+..++ +.|..++... -.+.+...+..|+.+-+. .+.+.|..++...-...
T Consensus 17 d~~g~t-~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~ 87 (364)
T 3ljn_A 17 DDENME-KIHVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAK----YLASVGEVHSLWHGQKP 87 (364)
T ss_dssp CHHHHH-HHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHH----HHHHHCCCCCCBTTBCH
T ss_pred CCCCCC-HHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHH----HHHHCCCCccccCCCCH
Confidence 444444 455556678766555544 4554443221 123344556667765443 34444433333122234
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCH--------------------HHHHHHHHHHHhcC--cHHHHHHHHHHhhhC
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNV--------------------AVYTALIDGLCKKN--CIERARNLFDEMPKR 144 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 144 (257)
+...+..|+.+-+..+++.....|..++. .-. +.+...+..| +.+-+..+++.-...
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~~~v~~Ll~~ga~~ 166 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQ-TALHWCVGLGPEYLEMIKILVQLGASP 166 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCC-CHHHHHHHSCGGGHHHHHHHHHHTCCT
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCC-CHHHHHHHcCCchHHHHHHHHHcCCCC
Confidence 44455668887777777663332322221 011 2344455666 666665555542211
Q ss_pred CCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHH-cCCCc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcH
Q 041259 145 DMIPDTTAYTALIDGYLKHESFKEALNLKNRMTE-VGVDL---DLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDE 220 (257)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (257)
+.. +..-.+. +...+..|+.+-+..+++.-.. .+..+ +..-.+.| ...+..|+.+-+ +.+++.|..++.
T Consensus 167 ~~~-d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v----~~Ll~~gad~~~ 239 (364)
T 3ljn_A 167 TAK-DKADETP-LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDVA----MRFVEMGIDVNM 239 (364)
T ss_dssp TCC-CTTSCCH-HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHHH----HHHHTTTCCTTC
T ss_pred ccc-CCCCCCH-HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHHH----HHHHHcCCCCCC
Confidence 111 2112222 3334456777666655554222 00001 11222222 334566776544 444455554432
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 041259 221 ---ILCISLLKKHYERGNMDEAIELQNE 245 (257)
Q Consensus 221 ---~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (257)
.-.+ -+...+..|..+-+.-+++.
T Consensus 240 ~d~~g~t-pL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 240 EDNEHTV-PLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CCTTSCC-HHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCC-HHHHHHHhChHHHHHHHHHc
Confidence 2223 33334556777766665554
No 336
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=56.36 E-value=23 Score=24.11 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=7.1
Q ss_pred HHHHhcCChhhHHHHH
Q 041259 18 WGLCIESKFEDSKLLL 33 (257)
Q Consensus 18 ~~~~~~~~~~~a~~~~ 33 (257)
...++.|+.+.+..++
T Consensus 7 ~~A~~~g~~~~v~~Ll 22 (228)
T 2dzn_A 7 HQACMENEFFKVQELL 22 (228)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHH
Confidence 3344455544444443
No 337
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=55.61 E-value=29 Score=23.69 Aligned_cols=180 Identities=12% Similarity=0.056 Sum_probs=78.9
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCcccHH--HHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcH
Q 041259 54 AYFKAGEPSEALSLLDEMLDSRIEVTVV--TFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCI 131 (257)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (257)
..++.|+.+.+..++ +.|..++.. .-...+...+..|+.+-+..+++.-.......+..- ...+...+..|+.
T Consensus 15 ~A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~t~L~~A~~~~~~ 89 (240)
T 3eu9_A 15 KATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLN-STPLHWATRQGHL 89 (240)
T ss_dssp HHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTT-BCHHHHHHHHTCH
T ss_pred HHHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcC-CChhHHHHHcCCH
Confidence 456677765554444 444433221 112345566677888777666654332211111111 1234445566777
Q ss_pred HHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCcHHHHH
Q 041259 132 ERARNLFDEMPKRDMIPD---TTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLD---LNAYTSLVWGLSRCGHLQEAR 205 (257)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~ 205 (257)
+-+..+++. |..++ ....+. +...+..|+.+-+..+ .+.|..++ ....+.+..++...+.. ...
T Consensus 90 ~~v~~Ll~~----g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~L----l~~~~~~~~~~~~g~t~l~~a~~~~~~~-~~~ 159 (240)
T 3eu9_A 90 SMVVQLMKY----GADPSLIDGEGCSC-IHLAAQFGHTSIVAYL----IAKGQDVDMMDQNGMTPLMWAAYRTHSV-DPT 159 (240)
T ss_dssp HHHHHHHHT----TCCTTCCCTTSCCH-HHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHHCCSS-TTH
T ss_pred HHHHHHHHc----CCCCcccCCCCCCH-HHHHHHcCHHHHHHHH----HhcCCCccccCCCCCcHHHHHHHhCChH-HHH
Confidence 655555543 33322 111222 3334455676544444 44444332 22223343343333322 222
Q ss_pred HHHHHHHhCCCCCcHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 041259 206 VLFHEMIGRGILPDEIL---CISLLKKHYERGNMDEAIELQNEMMGRGLLSGS 255 (257)
Q Consensus 206 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 255 (257)
+.+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++.
T Consensus 160 ---~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~ 205 (240)
T 3eu9_A 160 ---RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI----SLLLEAGANVDA 205 (240)
T ss_dssp ---HHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHH----HHHHHHTCCTTC
T ss_pred ---HHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHH----HHHHHcCCCCCC
Confidence 23334443333211 11234445567776643 344455655553
No 338
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=53.83 E-value=36 Score=23.28 Aligned_cols=212 Identities=7% Similarity=-0.053 Sum_probs=97.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCccHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHH--HHHHHHHHH
Q 041259 16 IIWGLCIESKFEDSKLLLSEMKENGLTANTVI--CTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVT--FCVLIDGLC 91 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~ 91 (257)
.+...+..|+.+ +++.+.+.|..++... -...+...+..|+.+-+ +.+.+.|..++... -...+...+
T Consensus 14 ~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 14 PLHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV----KYLIKAGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCCCCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHHH
Confidence 455566777765 4445555554443211 12234445566775544 44445554332211 112344455
Q ss_pred hcCcHHHHHHHHHhc-ccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHH--HHHHHHHHHHcccCHHH
Q 041259 92 KSGLVREAIDYFGRM-PDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTT--AYTALIDGYLKHESFKE 168 (257)
Q Consensus 92 ~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 168 (257)
..|+.+-+..+++.- .... .++..-. ..+...+..|+.+-+..+++. |..++.. .-...+...+..|+.+-
T Consensus 86 ~~~~~~~~~~Ll~~~~~~~~-~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 86 KKGHYEVVQYLLSNGQMDVN-CQDDGGW-TPMIWATEYKHVDLVKLLLSK----GSDINIRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp HTTCHHHHHHHHTTTCCCTT-CCCTTSC-CHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred HcCCHHHHHHHHhCCCCCcc-cCCCCCC-CHHHHHHHcCCHHHHHHHHHC----CCCCCccCCCCCCHHHHHHHCCCHHH
Confidence 667776665555543 1111 1111111 223344556776655555543 3322211 00112233344566554
Q ss_pred HHHHHHHHHHcCCCccHHH--HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 041259 169 ALNLKNRMTEVGVDLDLNA--YTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEI--LCISLLKKHYERGNMDEAIELQN 244 (257)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~ 244 (257)
++.+.+.|..++... -.+.+...++.|+.+-+ +.+.+.|..++.. .-.+.+......|+...+.++.+
T Consensus 160 ----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 160 ----AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp ----HHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred ----HHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 444445554433211 11223344566766544 3344555544321 11123444456788888888888
Q ss_pred HHHhC
Q 041259 245 EMMGR 249 (257)
Q Consensus 245 ~m~~~ 249 (257)
.+.++
T Consensus 232 ~l~ds 236 (237)
T 3b7b_A 232 ALQDS 236 (237)
T ss_dssp HHHHC
T ss_pred Hhhcc
Confidence 77653
No 339
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=53.68 E-value=52 Score=22.71 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=10.6
Q ss_pred cCcHHHHHHHHHHhhhCCCCCC
Q 041259 128 KNCIERARNLFDEMPKRDMIPD 149 (257)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~ 149 (257)
-.+.+.|+-.+-+|++.|-.|.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~ 69 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPN 69 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 3445555555555555544433
No 340
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=52.63 E-value=28 Score=19.34 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=31.2
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcC
Q 041259 35 EMKENGLTANTVICTTLMDAYFKAG-EPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSG 94 (257)
Q Consensus 35 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (257)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3445565555433 33444444443 44556667766665544445555555555555544
No 341
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.48 E-value=40 Score=21.03 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhCCCCCcHHHHH
Q 041259 152 AYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCG--HLQEARVLFHEMIGRGILPDEILCI 224 (257)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (257)
....++.-|...|+.++|...++++...... ...+...+..++-+.+ ..+.+..++..+...|+-+......
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~ 82 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 82 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 4567788899999999999999988633221 3344455555555543 2467888888888877655544433
No 342
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=52.00 E-value=62 Score=26.32 Aligned_cols=54 Identities=4% Similarity=-0.024 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 041259 184 DLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEA 239 (257)
Q Consensus 184 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 239 (257)
+..-...++..|.+.|-.+.|.++++.+-.+-+. +...+ ..+..|.++|+++..
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 4556788899999999999999999888765332 34445 566678888888764
No 343
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=51.14 E-value=87 Score=24.54 Aligned_cols=56 Identities=20% Similarity=0.124 Sum_probs=36.2
Q ss_pred cccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhCCCC
Q 041259 162 KHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGH-----LQEARVLFHEMIGRGIL 217 (257)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~ 217 (257)
+..+.+.|+..+.+|.+.|..|....-..++.+.-.-|. ...|...++....-|.+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 357888899999999988877665555555555554443 34455555555555643
No 344
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=51.01 E-value=35 Score=19.98 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHH
Q 041259 130 CIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFK 167 (257)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (257)
..+.|.++++.+..+|.. .|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQ----ALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChH----HHHHHHHHHHHcCcHH
Confidence 445555555555554432 4445555544444433
No 345
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=50.42 E-value=28 Score=18.74 Aligned_cols=44 Identities=14% Similarity=0.030 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 041259 13 YGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFK 57 (257)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 57 (257)
++-++..++...-+++++-.++++.+.| ..+...|---.+..++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4455555555555666666666666555 3444444444444433
No 346
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.85 E-value=1e+02 Score=24.87 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCC-CCCH--HHHH-HHHHHHHhcCcHHHHHHHHHHhhhCC
Q 041259 79 TVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGL-HPNV--AVYT-ALIDGLCKKNCIERARNLFDEMPKRD 145 (257)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (257)
-...+|.+++.|...+.++.|..+.....--.. .++. ..|. -+.+.+.-.+++.+|.+.+.......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 356788999999999999999999988742100 1111 2222 23556677899999999998876653
No 347
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=49.53 E-value=15 Score=22.78 Aligned_cols=52 Identities=8% Similarity=-0.020 Sum_probs=32.5
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHH
Q 041259 153 YTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVL 207 (257)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 207 (257)
|--.|......++.+-|.++++-..+.| +...|.+.+..|...=+++-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 4444555566677777777777776665 556666666666666666655543
No 348
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=47.60 E-value=1.4e+02 Score=26.00 Aligned_cols=160 Identities=11% Similarity=0.018 Sum_probs=84.8
Q ss_pred HHHHHHHHhcCC---hHHHHHHHHHHHhcC----CcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHH
Q 041259 49 TTLMDAYFKAGE---PSEALSLLDEMLDSR----IEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTAL 121 (257)
Q Consensus 49 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (257)
..++...|..|. .+.|.+.|+.....+ ++|+.. ..+...-.+.|..++-..++++.... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 445666777776 456777887776532 444432 23333334556666666666666653 344445678
Q ss_pred HHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHH---cCCCccHHHHHHHHHHHHhc
Q 041259 122 IDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTE---VGVDLDLNAYTSLVWGLSRC 198 (257)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~ 198 (257)
+.+++...+.....++++.....+..........+..........+.+.+.+..=-+ .........+..++......
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~ 844 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRR 844 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 888888888888888888876644222333333333222222223444444432111 11222334566677766655
Q ss_pred CcHHHHHHHHHHHHh
Q 041259 199 GHLQEARVLFHEMIG 213 (257)
Q Consensus 199 ~~~~~a~~~~~~~~~ 213 (257)
-..++-.+-++...+
T Consensus 845 ~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 845 FSSEFELQQLEQFKK 859 (909)
T ss_dssp CCSHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHh
Confidence 444444444444443
No 349
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=47.50 E-value=46 Score=20.32 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHHhcCcHHHHHHHH
Q 041259 130 CIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTE-VGVDLDLNAYTSLVWGLSRCGHLQEARVLF 208 (257)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 208 (257)
.+.+|..-+++.... .+|......++..+.. -++.+.++.+...+ .|+ .+.++...++...+.|-++.. +.|
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~--t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEF--TFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 466777777777554 3455555566654432 23444444444333 454 355666677777777766555 344
Q ss_pred HHHHh
Q 041259 209 HEMIG 213 (257)
Q Consensus 209 ~~~~~ 213 (257)
..|..
T Consensus 76 ~~m~~ 80 (119)
T 1wty_A 76 LEMLE 80 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 350
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=46.62 E-value=57 Score=21.17 Aligned_cols=46 Identities=7% Similarity=0.161 Sum_probs=18.3
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCC
Q 041259 134 ARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGV 181 (257)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (257)
...+++.+.+.|..-|...-...++...+.| .....+-.++...|+
T Consensus 49 i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI 94 (159)
T 3c1d_A 49 YERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGI 94 (159)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCC
Confidence 3344444444444423322233333333322 122334445555554
No 351
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=44.82 E-value=68 Score=21.53 Aligned_cols=71 Identities=15% Similarity=0.039 Sum_probs=39.7
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCH-HHHHHHHHHHHhcCcHH
Q 041259 54 AYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNV-AVYTALIDGLCKKNCIE 132 (257)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 132 (257)
+|.+..++..|+..++.+....+..|+. .+. ++ +.|.-. +.|. ..++.+...+...|+.+
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~--------------~d~--~~-~~ffvd--~~DkEfFy~l~a~lltq~g~r~ 131 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPD--------------VDA--RI-QEMFVD--PGDEEFFESLLGDLCTLSGYRE 131 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCC--------------CCH--HH-HTTSCC--TTCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcc--------------ccc--cc-ceeeec--cchHHHHHHHHHHHHHHhcCHH
Confidence 5677889999999999998654442211 111 11 111111 2233 34455556666677777
Q ss_pred HHHHHHHHhhh
Q 041259 133 RARNLFDEMPK 143 (257)
Q Consensus 133 ~a~~~~~~~~~ 143 (257)
+|+..+..--.
T Consensus 132 EaI~y~~~Sf~ 142 (242)
T 3kae_A 132 EGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHH
T ss_pred HhhhHhhhhcC
Confidence 77777665443
No 352
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=44.74 E-value=64 Score=21.17 Aligned_cols=52 Identities=12% Similarity=-0.036 Sum_probs=36.0
Q ss_pred cccCHHHHHHHHHHHHHcCCCc--cHHHHHHHHH-H-----HHhcCcHHHHHHHHHHHHh
Q 041259 162 KHESFKEALNLKNRMTEVGVDL--DLNAYTSLVW-G-----LSRCGHLQEARVLFHEMIG 213 (257)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~ 213 (257)
..|++-+|.++++..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4488888888888877665455 4556666666 2 2357888888888887765
No 353
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=44.00 E-value=1.2e+02 Score=24.10 Aligned_cols=140 Identities=12% Similarity=0.039 Sum_probs=76.9
Q ss_pred CcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHH
Q 041259 94 GLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLK 173 (257)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (257)
.+.+.|.++-.+ .|++--...|..-...+...|++++|-++--..... +--+..|.+.+-.+-...|+..-.+.+|
T Consensus 343 ~n~~lA~~lA~R---~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMAVR---NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHHHH---TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHHh---cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 455555555443 344444455655666777777777777766665443 3336666666555555556666667777
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041259 174 NRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNEM 246 (257)
Q Consensus 174 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 246 (257)
..+.+.|. .+..----+++.-...|+.+-.+.++. +..+..+...=. ++ +..+..-|+.+|.+.
T Consensus 419 ~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekWl~---e~KL~~SEeLGD-lv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 419 GILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKWLK---EDKLECSEELGD-LV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHH---HTCSCCCHHHHH-HH----HHHCSHHHHHHHHHH
T ss_pred HHHhccCc-cchHHhhHHhHHHHhccHHHHHHHHHh---cCCccccHHhHh-hh----hhcCHHHHHHHHHHc
Confidence 77776653 344433445666666677666555543 233444444322 22 233445555555443
No 354
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=43.07 E-value=69 Score=21.04 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 041259 49 TTLMDAYFKAGEPSEALSLLDEML 72 (257)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~ 72 (257)
..++.-|...++.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555666666666666666654
No 355
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=42.62 E-value=63 Score=24.76 Aligned_cols=50 Identities=22% Similarity=0.139 Sum_probs=24.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCccHHH--HHHHHHHHHhcCChHHHHHHH
Q 041259 15 TIIWGLCIESKFEDSKLLLSEMKENGLTANTVI--CTTLMDAYFKAGEPSEALSLL 68 (257)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~ 68 (257)
+.+...+..|+.+-+..+ .+.|..++... ..+.+...+..|+.+-+..++
T Consensus 16 t~L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 67 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 67 (437)
T ss_dssp CHHHHHHHHTCHHHHHHH----HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 345555667776544444 44454443221 123344455666655444443
No 356
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=41.80 E-value=74 Score=21.05 Aligned_cols=129 Identities=14% Similarity=0.124 Sum_probs=77.3
Q ss_pred HHHhcCcHHHHHHHHHHhhhCCCCCCHH--HHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHh-
Q 041259 124 GLCKKNCIERARNLFDEMPKRDMIPDTT--AYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLN---AYTSLVWGLSR- 197 (257)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~- 197 (257)
..++.|+.+....++..- .. ... .-.+.+...+..|+.+.-.++.+.+.+.|..++.. -.+.|..++..
T Consensus 12 ~Aa~~g~~~~~~~l~~~~----~~-~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~ 86 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEKG----YE-DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG 86 (186)
T ss_dssp HHHHHSCHHHHHHHHHHS----SS-CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHhcC----cc-cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence 345778988877666542 22 222 12244555566777777777888888888766542 23333333322
Q ss_pred cCcHHHHHHHHHHHHhCCCCCcHH---HHHHHHHHHHhcCCH-HHHHHHHHHHHh-CCCCCCCCC
Q 041259 198 CGHLQEARVLFHEMIGRGILPDEI---LCISLLKKHYERGNM-DEAIELQNEMMG-RGLLSGSKN 257 (257)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~-~~a~~~~~~m~~-~~~~~~~~~ 257 (257)
..+.....++.+.+++.|..++.. -.++.+...+..|.. ..-..+++.+++ .|..++.++
T Consensus 87 ~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d 151 (186)
T 3t8k_A 87 GNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD 151 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCC
T ss_pred CcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccC
Confidence 334555667788888888776643 331344433344433 456678888888 899888764
No 357
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=41.07 E-value=29 Score=18.20 Aligned_cols=21 Identities=5% Similarity=0.151 Sum_probs=15.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCC
Q 041259 233 RGNMDEAIELQNEMMGRGLLS 253 (257)
Q Consensus 233 ~g~~~~a~~~~~~m~~~~~~~ 253 (257)
.-|++.|...|.++...|-.|
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP 53 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIP 53 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSC
T ss_pred CCCHHHHHHHHHHHHHcCCCC
Confidence 567888888888887765444
No 358
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=40.99 E-value=55 Score=19.35 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 041259 28 DSKLLLSEMKENGLTANTVICTTLMDAYFKAGE 60 (257)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 60 (257)
.|.++.+++...|+.|+..+..-++..|...+-
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 456666677677777777777777776666553
No 359
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=40.03 E-value=1.6e+02 Score=24.37 Aligned_cols=115 Identities=12% Similarity=0.096 Sum_probs=63.1
Q ss_pred ChhhHHHHHHHHHHcCCCccHHHHHHHHHH----HHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHH
Q 041259 25 KFEDSKLLLSEMKENGLTANTVICTTLMDA----YFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAI 100 (257)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 100 (257)
+.+.|...+....+.. ..+......+-.. ....+...++...+........ +.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCCHHHHH
Confidence 6677877777775443 2233322222222 2223324455566665444322 2222333334445668888888
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhh
Q 041259 101 DYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPK 143 (257)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (257)
..|..|..... ......--+.+++...|+.++|..+|..+..
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888765321 2333334556677778888888888777643
No 360
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=39.65 E-value=1.9e+02 Score=25.22 Aligned_cols=156 Identities=13% Similarity=0.077 Sum_probs=85.5
Q ss_pred HHHHHHHHhcCC---hhhHHHHHHHHHHcC----CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHH
Q 041259 14 GTIIWGLCIESK---FEDSKLLLSEMKENG----LTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVL 86 (257)
Q Consensus 14 ~~li~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (257)
..++...|..|. .+.|.+.|+.....+ ++|+.. ..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 345666777765 356777887766532 455543 334444556677777777777777653 33445668
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHh-cCcHHHHHHHHHH----hhhCCCCCCHHHHHHHHHHH
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFG-LHPNVAVYTALIDGLCK-KNCIERARNLFDE----MPKRDMIPDTTAYTALIDGY 160 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~ 160 (257)
+.+++...+.....++++...... +++. .... ++.+... ....+.|.+.+.. +.+. .......+..++...
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~-~~~~~~~~~~~i~~~ 841 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQ-DATS-TINSIASNVIGQPLAWDFVQSNWKKLFQD-YGGGSFSFSNLIQGV 841 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTS-SSSCCCCHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHH
Confidence 888888889888888888876543 3332 2222 3333333 2234555555544 2222 222333456666665
Q ss_pred HcccCHHHHHHHHHHHH
Q 041259 161 LKHESFKEALNLKNRMT 177 (257)
Q Consensus 161 ~~~~~~~~a~~~~~~~~ 177 (257)
...-.-++-.+-++...
T Consensus 842 ~~~~~t~~~~~~~~~f~ 858 (909)
T 4fke_A 842 TRRFSSEFELQQLEQFK 858 (909)
T ss_dssp HTTCCSHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 54433333333334433
No 361
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=39.28 E-value=28 Score=18.30 Aligned_cols=24 Identities=33% Similarity=0.248 Sum_probs=16.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCC
Q 041259 232 ERGNMDEAIELQNEMMGRGLLSGS 255 (257)
Q Consensus 232 ~~g~~~~a~~~~~~m~~~~~~~~~ 255 (257)
..|+.+.|+..+-+|...+..|++
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCCC
Confidence 356777777777777766666654
No 362
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=39.22 E-value=1.6e+02 Score=24.08 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHH
Q 041259 149 DTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEA 204 (257)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 204 (257)
+..-...++..|.+.|-.+.|.++++.+-..-.. +...+ ..+..|++.|+++..
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 5667788899999999999999999888765443 33445 556677888887654
No 363
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=38.41 E-value=1.6e+02 Score=27.17 Aligned_cols=78 Identities=12% Similarity=0.035 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 041259 61 PSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDE 140 (257)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (257)
.+...+.|.++.+---.-|.......+......+++..|++++.++.+. +|+...|..++..+...| |+....+.++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHHh
Confidence 3344555666654311113333333333334567788888888877765 367777777776665555 3444444444
Q ss_pred h
Q 041259 141 M 141 (257)
Q Consensus 141 ~ 141 (257)
+
T Consensus 1342 ~ 1342 (1354)
T 3lxu_X 1342 M 1342 (1354)
T ss_dssp H
T ss_pred h
Confidence 3
No 364
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=38.02 E-value=68 Score=23.88 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHH--HHHHHH---HhcCcHHHHHHHHHH
Q 041259 66 SLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYT--ALIDGL---CKKNCIERARNLFDE 140 (257)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~---~~~~~~~~a~~~~~~ 140 (257)
++++.+.+.|+.|...++.=++..+.+.=.++.+..+|+.+...|. ....+. +++..+ ....+.++...++..
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~--~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~ 291 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGE--EFLFRTALGILKLFEDILTKMDFIHMAQFLTR 291 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 3556666778888888887788888877788899999998877652 222222 222221 123467788877776
Q ss_pred hhh
Q 041259 141 MPK 143 (257)
Q Consensus 141 ~~~ 143 (257)
+..
T Consensus 292 lp~ 294 (334)
T 2qq8_A 292 LPE 294 (334)
T ss_dssp CCT
T ss_pred CCC
Confidence 654
No 365
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=37.79 E-value=32 Score=21.61 Aligned_cols=12 Identities=33% Similarity=0.445 Sum_probs=4.5
Q ss_pred hcCChHHHHHHH
Q 041259 57 KAGEPSEALSLL 68 (257)
Q Consensus 57 ~~~~~~~a~~~~ 68 (257)
+.|+.+.+..++
T Consensus 11 ~~g~~~~v~~ll 22 (156)
T 1bd8_A 11 ARGDVQEVRRLL 22 (156)
T ss_dssp HHTCHHHHHHHH
T ss_pred HhCCHHHHHHHH
Confidence 334433333333
No 366
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=37.47 E-value=1.1e+02 Score=24.09 Aligned_cols=61 Identities=8% Similarity=0.035 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCccH--------HHHH-HHHHHHHhcCChHHHHHHHHHHHh
Q 041259 13 YGTIIWGLCIESKFEDSKLLLSEMKENGLTANT--------VICT-TLMDAYFKAGEPSEALSLLDEMLD 73 (257)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~-~l~~~~~~~~~~~~a~~~~~~~~~ 73 (257)
.|.+...|.+.++...+..+++.+...+..|+. .+|. -+...+...+++.+|.+.+.....
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 455666677777777777777666655432211 1222 233444556666666666655543
No 367
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=37.46 E-value=44 Score=20.73 Aligned_cols=48 Identities=10% Similarity=0.035 Sum_probs=23.6
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHH
Q 041259 121 LIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALN 171 (257)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (257)
.|...+..++.+-|.++++-..+.| +...|.+.+-.|...=+++-+++
T Consensus 38 AietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 38 AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp HHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 4444444555555555555555443 34445555555544444444443
No 368
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=36.94 E-value=20 Score=25.39 Aligned_cols=89 Identities=9% Similarity=-0.015 Sum_probs=48.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCcc-------cHHHHHHHHHHHH--hcCcHHHHHHHHHhccc---------CCCC
Q 041259 51 LMDAYFKAGEPSEALSLLDEMLDSRIEV-------TVVTFCVLIDGLC--KSGLVREAIDYFGRMPD---------FGLH 112 (257)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~---------~~~~ 112 (257)
.+...++.|+.+.+..+++...+.+... +..-++.|..++. +.|+.+-+..+++.-.. .+..
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~ 95 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYT 95 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccc
Confidence 3445667899888888888776554322 2233444555543 35777777666665321 1100
Q ss_pred -CCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 041259 113 -PNVAVYTALIDGLCKKNCIERARNLFDE 140 (257)
Q Consensus 113 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (257)
.+..-. +.+...+..|+.+-+..+++.
T Consensus 96 ~~d~~g~-tpL~~A~~~g~~~~v~~Ll~~ 123 (273)
T 2pnn_A 96 DSYYKGQ-TALHIAIERRNMTLVTLLVEN 123 (273)
T ss_dssp STTTTTC-CHHHHHHHTTCHHHHHHHHHT
T ss_pred cccCCCC-CHHHHHHHcCCHHHHHHHHHC
Confidence 111112 233444567777766666654
No 369
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=36.67 E-value=92 Score=20.67 Aligned_cols=29 Identities=7% Similarity=0.119 Sum_probs=11.7
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 041259 98 EAIDYFGRMPDFGLHPNVAVYTALIDGLC 126 (257)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (257)
.+..++..+.+.|+.-|...-...+....
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~ 79 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMM 79 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 33444444444444333333333343333
No 370
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=36.48 E-value=1.1e+02 Score=21.29 Aligned_cols=104 Identities=8% Similarity=-0.020 Sum_probs=61.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccc-CHHHHHHHHHHHHHcCCCccH
Q 041259 107 PDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHE-SFKEALNLKNRMTEVGVDLDL 185 (257)
Q Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~ 185 (257)
...|...+...+..+........-...|+.++..-. . +-..|-.-+.+.| ..+.+..++..+.+.|.--|.
T Consensus 40 L~kg~el~~e~~~~i~~~~~~~~a~~~Al~~Ls~r~----~----S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~ 111 (221)
T 3d5l_A 40 LMKGTELDEKQIAAIATADQQAKAYSRMLDYLSYQM----R----TESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDH 111 (221)
T ss_dssp CCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHTTSC----C----CHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH
T ss_pred CcCCCCCCHHHHHHHHHhHHHHHHHHHHHHHhcccc----c----cHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHH
Confidence 556667788888877765444333444444443321 1 1222333333344 566778899999999987666
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc
Q 041259 186 NAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD 219 (257)
Q Consensus 186 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (257)
..-..++....+.+.+ ....+-.++..+|+.++
T Consensus 112 rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~~ 144 (221)
T 3d5l_A 112 AYAASYVRTMINTDLK-GPGIIRQHLRQKGIGES 144 (221)
T ss_dssp HHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCHH
Confidence 6666777776652222 24456678888888643
No 371
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=36.23 E-value=1.4e+02 Score=22.48 Aligned_cols=83 Identities=13% Similarity=0.055 Sum_probs=44.4
Q ss_pred HHhcCChHHHHHH----HHHHHhcCCcccHHHHHHHHHHHHhcCcH--------HHHHHHHHhcccCCCCCCHHHHHHHH
Q 041259 55 YFKAGEPSEALSL----LDEMLDSRIEVTVVTFCVLIDGLCKSGLV--------REAIDYFGRMPDFGLHPNVAVYTALI 122 (257)
Q Consensus 55 ~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (257)
+.+.|+...|-++ ++-+.+.+.+++......++..+.....- +.|+++=...- ..-.-|......+.
T Consensus 65 ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~ig 143 (336)
T 3lpz_A 65 LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFG-DYPAGDPELHHVVG 143 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHS-SCTTCCHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHH
Confidence 4445555443333 34444556666766666666666554321 12222222111 11233566667777
Q ss_pred HHHHhcCcHHHHHHHH
Q 041259 123 DGLCKKNCIERARNLF 138 (257)
Q Consensus 123 ~~~~~~~~~~~a~~~~ 138 (257)
..|.+.+++.+|...|
T Consensus 144 ~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 144 TLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHccCCHHHHHHHH
Confidence 8888888888887766
No 372
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=35.61 E-value=1e+02 Score=20.77 Aligned_cols=198 Identities=14% Similarity=0.069 Sum_probs=101.3
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHH-HHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHH
Q 041259 20 LCIESKFEDSKLLLSEMKENGLTANTVICTTLMD-AYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVRE 98 (257)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (257)
+.+-.+++.+.-+-.-+. |...-|..|+. .+.-.|.+..++-++..+- ..+..-|. --+|.+..++..
T Consensus 12 s~kY~dYdt~~fLsa~L~-----~~~~eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk--~LCy~klKdYkk 80 (242)
T 3kae_A 12 SIRYRDYETAIFLAACLL-----PCKPEYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYE--SLCYKKKKDYKK 80 (242)
T ss_dssp HHHTTCHHHHHHHHHHHC---------CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHH--HHHHHHTTCHHH
T ss_pred HhhcccccHHHHHHHHHc-----cCChHHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHH--HHHHHHHHHHHH
Confidence 345566766654433332 22234554443 3445688888876654331 11222232 235667889999
Q ss_pred HHHHHHhcccCCCC--CCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHH
Q 041259 99 AIDYFGRMPDFGLH--PNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRM 176 (257)
Q Consensus 99 a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (257)
|...++.+....+. ||+.. - ++.|.-. .......++.+...+...|+.++|...+..-
T Consensus 81 A~~~le~il~~kvd~d~~~d~---~----------------~~~ffvd-~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 81 AIKSLESILEGKVERDPDVDA---R----------------IQEMFVD-PGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHHTTCSBCCCCCCH---H----------------HHTTSCC-TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCccccc---c----------------cceeeec-cchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 99999988755444 33321 0 1111111 1213455667777888899999999987754
Q ss_pred HHcCCCccHHHHHHHHHH--------------HHhcC----cHHHHHHHHH----HHHhC--CCCCcHHHHH--HHHHHH
Q 041259 177 TEVGVDLDLNAYTSLVWG--------------LSRCG----HLQEARVLFH----EMIGR--GILPDEILCI--SLLKKH 230 (257)
Q Consensus 177 ~~~~~~~~~~~~~~li~~--------------~~~~~----~~~~a~~~~~----~~~~~--~~~~~~~~~~--~l~~~~ 230 (257)
-...+- ..+...++-- -.+.| .+.....+.+ ...+. ++.|..-+|. .....+
T Consensus 141 f~~~~l--f~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~y 218 (242)
T 3kae_A 141 FGKSFL--FSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRY 218 (242)
T ss_dssp HHHCCC--HHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHH
T ss_pred cCCccc--cchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 332211 1111111100 00000 0111122222 11111 3567766554 344567
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 041259 231 YERGNMDEAIELQNEMMGRG 250 (257)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~~~ 250 (257)
...|-.++...+|..+.+.+
T Consensus 219 f~lg~~d~s~~lf~~lR~kD 238 (242)
T 3kae_A 219 FNLGMNDKSKACFELVRRKD 238 (242)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HhcccchhHHHHHHHHHhcC
Confidence 78999999999999887654
No 373
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=35.39 E-value=65 Score=21.44 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhc
Q 041259 43 ANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKS 93 (257)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 93 (257)
|....++.++..++...-.+.++..+.+....|. .+..+|---.+.+++.
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666666653 3555555555555543
No 374
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=34.48 E-value=1.6e+02 Score=22.73 Aligned_cols=146 Identities=13% Similarity=0.077 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcC----CcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHH
Q 041259 44 NTVICTTLMDAYFKAGE---PSEALSLLDEMLDSR----IEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVA 116 (257)
Q Consensus 44 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 116 (257)
+......++...|..|+ .+.|.+.|+.....+ ++|+.... +...-.+ ..++-..+++..... .+..
T Consensus 196 ~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~--Vy~~~~~--~~~~~~~l~~~y~~s---~~~~ 268 (419)
T 3rjo_A 196 ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA--VFAVGAQ--STEGWDFLYSKYQFS---LSST 268 (419)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH--HHHHHTT--SHHHHHHHHHHHHHC---CCHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee--EEeeeeC--CHHHHHHHHHHHhcC---CCHH
Confidence 34444556666666665 456777777766432 44443221 1111111 123333444444432 3444
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc-ccCHHHHHHHHH----HHHHcCCCccHHHHHHH
Q 041259 117 VYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLK-HESFKEALNLKN----RMTEVGVDLDLNAYTSL 191 (257)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l 191 (257)
--..++.+++...+.....++++.....++.........+ .+... ..-.+.+.+.+. .+.+. ..++...+..+
T Consensus 269 ek~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~~~-~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~ 346 (419)
T 3rjo_A 269 EKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQIL-TLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHM 346 (419)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHHHH-HHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHHHH-HHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHH
Confidence 4566777777778887777777777655431223333332 23332 223344554443 23322 11233456666
Q ss_pred HHHHHhc
Q 041259 192 VWGLSRC 198 (257)
Q Consensus 192 i~~~~~~ 198 (257)
+......
T Consensus 347 i~~~~~~ 353 (419)
T 3rjo_A 347 VMGTTNQ 353 (419)
T ss_dssp HHHTTTT
T ss_pred HHHHhhc
Confidence 6555443
No 375
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=34.45 E-value=59 Score=20.02 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhCCCC
Q 041259 200 HLQEARVLFHEMIGRGIL-PDEILCISLLKKHY---ERGNMDEAIELQNEMMGRGLL 252 (257)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~ 252 (257)
.+++|.+.+..|++.-+. -.+..||..+..+. ..++. ..+|..+.+.++-
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lg 95 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 95 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcC
Confidence 466666666666543111 24556666666554 23333 4445556655543
No 376
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=33.42 E-value=2.1e+02 Score=23.90 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 041259 10 LPLYGTIIWGLCIESKFEDSKLLLSEMKENGLTANTVICTTLMDAYFK 57 (257)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 57 (257)
..+|- +|..|.++|.+++|.++.++.... +..-...+...+..|+.
T Consensus 153 ~p~Wa-~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 153 VPIWA-LIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp EEHHH-HHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cccHH-HHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 34674 777788999999999988766432 11112345555566653
No 377
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=33.38 E-value=1.3e+02 Score=21.40 Aligned_cols=221 Identities=11% Similarity=0.018 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHH---------cCC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHH
Q 041259 12 LYGTIIWGLCIESKFEDSKLLLSEMKE---------NGL-TANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVV 81 (257)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 81 (257)
...+.+...+..|+.++..++...... .++ ..+..- .+.+...+..|+.+-+.. +.+.|..++..
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g-~t~L~~Aa~~g~~~~v~~----Ll~~g~~~~~~ 88 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD-WSPMHEAAIHGHQLSLRN----LISQGWAVNII 88 (285)
T ss_dssp ----------------------------CCSEECCCCTTCSSSCCS-CCHHHHHHHTTCHHHHHH----HHHTTCCSCEE
T ss_pred HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccC-CCHHHHHHHcCCHHHHHH----HHHCCCCCCCc
Confidence 345566777777887777665443322 110 011111 233445566777654443 44444333221
Q ss_pred H--HHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 041259 82 T--FCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDG 159 (257)
Q Consensus 82 ~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (257)
. -.+.+...+..|+.+-+..+++.-.... ..+..-. +.+...+..|+.+-+..+++.-..... +.. -...+..
T Consensus 89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~-g~t~L~~ 163 (285)
T 3d9h_A 89 TADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWH-TPLFNACVSGSWDCVNLLLQHGASVQP--ESD-LASPIHE 163 (285)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCC-CHHHHHHHHTCHHHHHHHHHTTCCSSC--SCT-TSCHHHH
T ss_pred CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCC-CHHHHHHHcCHHHHHHHHHHCCCCCCC--CCC-CCCHHHH
Confidence 1 1123444456677766655554321111 0111111 223334455666655555543222111 111 1122333
Q ss_pred HHcccCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHhcC
Q 041259 160 YLKHESFKEALNLKNRMTEVGVDLD---LNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDE--ILCISLLKKHYERG 234 (257)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g 234 (257)
.+..|+.+-+..++ +.|..++ ..-.+. +...+..|+.+-+..+ .+.|..++. .-.+ .+...+..|
T Consensus 164 A~~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~-L~~A~~~~~~~~v~~L----l~~ga~~~~~~~g~t-~L~~A~~~~ 233 (285)
T 3d9h_A 164 AARRGHVECVNSLI----AYGGNIDHKISHLGTP-LYLACENQQRACVKKL----LESGADVNQGKGQDS-PLHAVVRTA 233 (285)
T ss_dssp HHHHTCHHHHHHHH----HTTCCTTCCBTTTBCH-HHHHHHTTCHHHHHHH----HHTTCCTTCCBTTBC-HHHHHHHTT
T ss_pred HHHcCCHHHHHHHH----HCCCCCCCcCCCCCCH-HHHHHHcCcHHHHHHH----HHCCCCCCCCCCCCC-HHHHHHHcC
Confidence 44556655444443 4443332 112222 3334556666544443 444444332 1222 333445566
Q ss_pred CHHHHHHHHHHHHhCCCCCCCC
Q 041259 235 NMDEAIELQNEMMGRGLLSGSK 256 (257)
Q Consensus 235 ~~~~a~~~~~~m~~~~~~~~~~ 256 (257)
+.+ +++.+++.|..++.+
T Consensus 234 ~~~----~v~~Ll~~gad~~~~ 251 (285)
T 3d9h_A 234 SEE----LACLLMDFGADTQAK 251 (285)
T ss_dssp CHH----HHHHHHHTTCCTTCC
T ss_pred CHH----HHHHHHHCCCCCCCc
Confidence 664 344455567666544
No 378
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=33.25 E-value=1.5e+02 Score=22.09 Aligned_cols=76 Identities=13% Similarity=0.016 Sum_probs=52.1
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc-HHHH--HHHHHH----HHhcCCHHHHHHHHH
Q 041259 172 LKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPD-EILC--ISLLKK----HYERGNMDEAIELQN 244 (257)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~--~~l~~~----~~~~g~~~~a~~~~~ 244 (257)
+++.+.+.|+.|...++..++..+.+.=.++.+.++|+.+...|.... ...+ .+++.. .....++++...+++
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~ 310 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQ 310 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 455566778888888999999999888889999999999998764432 2222 222222 223577777777766
Q ss_pred HHH
Q 041259 245 EMM 247 (257)
Q Consensus 245 ~m~ 247 (257)
.+.
T Consensus 311 ~~p 313 (345)
T 2qfz_A 311 NLP 313 (345)
T ss_dssp SCS
T ss_pred cCC
Confidence 543
No 379
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.24 E-value=53 Score=16.87 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=6.1
Q ss_pred HHHHHHHHHHH
Q 041259 236 MDEAIELQNEM 246 (257)
Q Consensus 236 ~~~a~~~~~~m 246 (257)
++.|++++.+|
T Consensus 38 le~AmewL~k~ 48 (54)
T 2cos_A 38 IEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555554
No 380
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=32.24 E-value=49 Score=24.67 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=22.8
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCC
Q 041259 174 NRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRG 215 (257)
Q Consensus 174 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 215 (257)
+.+.+.|+.|...++..++..|.+.=.++.+.++++.+...|
T Consensus 217 ~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 217 AHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 334445555555555555555555555555666665555443
No 381
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=32.20 E-value=1.2e+02 Score=20.52 Aligned_cols=25 Identities=12% Similarity=-0.103 Sum_probs=14.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCC
Q 041259 228 KKHYERGNMDEAIELQNEMMGRGLL 252 (257)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~m~~~~~~ 252 (257)
...+..|+.+-+..+++.+.+.|..
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCc
Confidence 3344566666666666666665543
No 382
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=32.06 E-value=71 Score=17.97 Aligned_cols=30 Identities=7% Similarity=-0.090 Sum_probs=13.7
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHHH
Q 041259 5 NIKADLPLYGTIIWGLCIESKFEDSKLLLS 34 (257)
Q Consensus 5 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 34 (257)
++.|++.||+-+...+-+..-..++..+.+
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik 60 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAK 60 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHH
Confidence 445555555555544433333333444333
No 383
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=31.65 E-value=1.6e+02 Score=23.31 Aligned_cols=60 Identities=17% Similarity=0.066 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCc--------HHHHH-HHHHHHHhcCCHHHHHHHHHHHH
Q 041259 188 YTSLVWGLSRCGHLQEARVLFHEMIGRGILPD--------EILCI-SLLKKHYERGNMDEAIELQNEMM 247 (257)
Q Consensus 188 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~-~l~~~~~~~g~~~~a~~~~~~m~ 247 (257)
.+.+.+.|.+.++...+..+++.+...+..|+ ..+|. .+...+...+++.+|.+.+....
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~ 247 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAF 247 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHH
Confidence 45555666666666666666665554433221 11222 23334445566666666555543
No 384
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=31.10 E-value=63 Score=22.10 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=12.5
Q ss_pred HHHHHcccCHHHHHHHHHHHH
Q 041259 157 IDGYLKHESFKEALNLKNRMT 177 (257)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~ 177 (257)
+..|.+.|.+++|.+++++.-
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHccchHHHHHHHHHHh
Confidence 344566666666666666643
No 385
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.70 E-value=1.3e+02 Score=20.61 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcccCCCCCCHHHH----HHHHHHHHhcCcHHHHHHHHHHhhhC
Q 041259 96 VREAIDYFGRMPDFGLHPNVAVY----TALIDGLCKKNCIERARNLFDEMPKR 144 (257)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (257)
++.|+.+|+.+.+.--.+....- -..+..|.+.|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 67889999888765311111111 12355789999999999999996554
No 386
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.60 E-value=2.8e+02 Score=24.40 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=56.5
Q ss_pred HHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCC-----------------
Q 041259 86 LIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIP----------------- 148 (257)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------- 148 (257)
++..+...+.++.+.++...+.. +...--.+..+|...|++++|...|++.-. |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-----t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-----SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 45555666777766665544432 333223567788999999999999987642 1110
Q ss_pred ------CHHHHHHHHHHHHcccCHHHHHHHHHHHHHc
Q 041259 149 ------DTTAYTALIDGYLKHESFKEALNLKNRMTEV 179 (257)
Q Consensus 149 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (257)
...-|..++..+-+.+-++.+.++-+...+.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1124567777777788888888777776653
No 387
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=30.52 E-value=48 Score=22.41 Aligned_cols=53 Identities=6% Similarity=-0.154 Sum_probs=23.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHh
Q 041259 52 MDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGR 105 (257)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 105 (257)
+...++.|+.+.+..+++.-.......+..-.+ .+...+..|+.+-+..+++.
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~ 58 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRI-PLHWSVSFQAHEITSFLLSK 58 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCC-HHHHHHHcCCHHHHHHHHhc
Confidence 344456666665555554432211112222222 23333445666555555544
No 388
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=30.33 E-value=1.1e+02 Score=19.48 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=71.9
Q ss_pred HHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCH
Q 041259 87 IDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESF 166 (257)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (257)
+...+..|+.+.+..+++.-...--..+..-++ .+...+..|+.+-+..+++.-...... +..-.+. +...+..|+.
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~-L~~A~~~~~~ 82 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFT-PLIWASAFGEIETVRFLLEWGADPHIL-AKERESA-LSLASTGGYT 82 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCC-HHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTCCCH-HHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCchhh-cccCCCH-HHHHHHCCCH
Confidence 445567788888887776643210112222222 344455678877666666542221111 1111222 3334556666
Q ss_pred HHHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHH---HHHHHHHHHHhcCCHHHHH
Q 041259 167 KEALNLKNRMTEVGVDLDL---NAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEI---LCISLLKKHYERGNMDEAI 240 (257)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~ 240 (257)
+-+.. +.+.|..++. .-.+.+ ...+..|+.+-+.. +.+.|..++.. -.+ .+......|..+-+.
T Consensus 83 ~~v~~----Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~----Ll~~ga~~~~~~~~g~t-~l~~A~~~~~~~~~~ 152 (172)
T 3v30_A 83 DIVGL----LLERDVDINIYDWNGGTPL-LYAVRGNHVKCVEA----LLARGADLTTEADSGYT-PMDLAVALGYRKVQQ 152 (172)
T ss_dssp HHHHH----HHTTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHH----HHHTTCCTTCCCTTSCC-HHHHHHHHTCHHHHH
T ss_pred HHHHH----HHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHH----HHHcCCCccccCCCCCC-HHHHHHHhCcHHHHH
Confidence 54443 4445544432 222333 33455677655444 44455544322 222 344445667777665
Q ss_pred HHHHHHHh
Q 041259 241 ELQNEMMG 248 (257)
Q Consensus 241 ~~~~~m~~ 248 (257)
-+++...+
T Consensus 153 ~L~~~~~~ 160 (172)
T 3v30_A 153 VIENHILK 160 (172)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 389
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=30.06 E-value=1.1e+02 Score=20.34 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 041259 150 TTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRC 198 (257)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 198 (257)
...++.++..++...-.++++..+.+....|. .+..+|---++.+++.
T Consensus 111 ~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 111 TDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 34456666666666666666666666666653 3555555555555543
No 390
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.70 E-value=1.2e+02 Score=19.95 Aligned_cols=171 Identities=12% Similarity=-0.074 Sum_probs=86.0
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHH
Q 041259 43 ANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALI 122 (257)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (257)
++...-...+..+.+.+..+.. ..+.++.. .++...-...+.++...++.+....+.. +.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAV-EPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHH-HHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---CCCHHHHHHHH
Confidence 4455555555555555553333 33333332 2344455555566666665433333333 332 25555556666
Q ss_pred HHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHH
Q 041259 123 DGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQ 202 (257)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 202 (257)
.++.+.++.+ +...+..+.. .++..+-...+.++...++.+ +...+..+... ++...-...+.++...|..
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~- 168 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGGE- 168 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCSH-
T ss_pred HHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCch-
Confidence 6666666643 3333333332 235555566666666666533 33334444332 3556666667777777664
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHhc
Q 041259 203 EARVLFHEMIGRGILPDEILCISLLKKHYER 233 (257)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (257)
++...+..+... ++...-...+.++.+.
T Consensus 169 ~~~~~L~~~l~d---~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 169 RVRAAMEKLAET---GTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 455555555543 3555545555555443
No 391
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=29.61 E-value=1.2e+02 Score=20.53 Aligned_cols=72 Identities=11% Similarity=-0.058 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041259 165 SFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQN 244 (257)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 244 (257)
+.....++.+.++.. +-+-.-.-.+|.++.+.|++++|.+++.++... .. .... ..+.+++.-|.-++.
T Consensus 14 ~l~~~~~~~~~LR~q--rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~~-----~q---~~~~-~~~i~~P~la~lLl~ 82 (192)
T 1ixm_A 14 DTALTNELIHLLGHS--RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVID-----AK---HESK-LSNLKTPHLAFDFLT 82 (192)
T ss_dssp CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HH---HHHH-HHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HH---HHHH-HHhCCCHHHHHHHHH
Confidence 445556666666554 224445567789999999999999999888763 11 1222 455777776666555
Q ss_pred HHH
Q 041259 245 EMM 247 (257)
Q Consensus 245 ~m~ 247 (257)
+..
T Consensus 83 K~~ 85 (192)
T 1ixm_A 83 FNW 85 (192)
T ss_dssp GGG
T ss_pred HHH
Confidence 543
No 392
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=29.10 E-value=1.1e+02 Score=19.46 Aligned_cols=80 Identities=8% Similarity=-0.007 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHH-cCCCc---cHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHH--HHHh-cCCHHHH
Q 041259 167 KEALNLKNRMTE-VGVDL---DLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLK--KHYE-RGNMDEA 239 (257)
Q Consensus 167 ~~a~~~~~~~~~-~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~-~g~~~~a 239 (257)
+.+.++.+...+ .|..| ++.++...++...+.|-++.. +.+..|.... ...+.+|+.... .+.. .......
T Consensus 55 Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~~~R-N~tvH~Y~e~~a~~v~~~I~~~l~~f 132 (146)
T 1jog_A 55 ELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYRDMR-NITSHTYDQEKAMAVYAQIDDFLIES 132 (146)
T ss_dssp HHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHHHHH-TTGGGTTSHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHHHHh-hHhcccccHhhHHHHHHHHHHHHHHH
Confidence 444444444333 44443 366777788888888877666 4455555431 224555553322 2222 1245555
Q ss_pred HHHHHHHHh
Q 041259 240 IELQNEMMG 248 (257)
Q Consensus 240 ~~~~~~m~~ 248 (257)
.++.+.+.+
T Consensus 133 ~~l~~~l~~ 141 (146)
T 1jog_A 133 SFLLEQLRQ 141 (146)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 555555554
No 393
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=29.06 E-value=1.8e+02 Score=21.71 Aligned_cols=162 Identities=14% Similarity=0.052 Sum_probs=79.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc-CCcccHHHHHHHHHHHHhcCcHHHHHH-HH-----------HhcccCCCCC---C
Q 041259 51 LMDAYFKAGEPSEALSLLDEMLDS-RIEVTVVTFCVLIDGLCKSGLVREAID-YF-----------GRMPDFGLHP---N 114 (257)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~-~~-----------~~~~~~~~~~---~ 114 (257)
+..-+...|.++.|.+++++-... +..|-.. .++..|....-.-.+.. .+ ++-...+..| +
T Consensus 34 laadhvAAGsFetAm~lLnrQvGivnf~PLk~---~F~~~y~~s~~~l~~~~~~lp~l~~~~~r~~~e~~~~~~lP~i~~ 110 (325)
T 3mv2_A 34 LPAVLVAAGAFDAAVQALSKQVGVVKLEPLKK---YFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVSEDQILPYVPG 110 (325)
T ss_dssp SHHHHHHTTCHHHHHHHHHHHHCBCCCGGGHH---HHHHHHHHTEEEECCSSTTSCCEEEECBSSCSSSCGGGCCBCCCC
T ss_pred cHHHHHHccCHHHHHHHHHHHhCccCchhhHH---HHHHHHHHHhhhcccCCCCCCcchhhhcCCccccccccCCCCCCC
Confidence 455678899999999999887643 2333222 23344432211100000 00 0000001112 2
Q ss_pred HHHHHHHHH---HHHhcCcHHHHHHHHHHhhhCC----CC--CCHHHHHHHHHHHH------------c---ccCHHHHH
Q 041259 115 VAVYTALID---GLCKKNCIERARNLFDEMPKRD----MI--PDTTAYTALIDGYL------------K---HESFKEAL 170 (257)
Q Consensus 115 ~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~~l~~~~~------------~---~~~~~~a~ 170 (257)
.......+. -+...|++++|+..|+.+...= +. -+..-...++..+. + ..+.....
T Consensus 111 l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~l 190 (325)
T 3mv2_A 111 LDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRML 190 (325)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 222222222 2356899999999998875431 00 01111112222111 1 12333344
Q ss_pred HHHHHHHHcCCCccH--HHHHHHHHHHHhcCcHHHHHHHHHHHHhCC
Q 041259 171 NLKNRMTEVGVDLDL--NAYTSLVWGLSRCGHLQEARVLFHEMIGRG 215 (257)
Q Consensus 171 ~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 215 (257)
++-.-+...++.|.- -+....+..+.+.+++..|..+.+++++.+
T Consensus 191 ELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 191 ELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 444444444444432 245556677778888888888888888764
No 394
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=28.81 E-value=21 Score=18.67 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=14.6
Q ss_pred CChhhHHHHHHHHHHcCCCccH
Q 041259 24 SKFEDSKLLLSEMKENGLTANT 45 (257)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~ 45 (257)
=+++.|...|... +..+||+.
T Consensus 33 Wd~~~A~~~F~~~-~~~IP~eA 53 (57)
T 2jp7_A 33 WNYEVAIKGFQSS-MNGIPREA 53 (57)
T ss_dssp TCSHHHHHHHHHS-TTTSCHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHH
Confidence 4778888888886 33466654
No 395
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=28.36 E-value=1.5e+02 Score=20.60 Aligned_cols=15 Identities=7% Similarity=-0.035 Sum_probs=7.4
Q ss_pred HHHHHhcCChhhHHH
Q 041259 17 IWGLCIESKFEDSKL 31 (257)
Q Consensus 17 i~~~~~~~~~~~a~~ 31 (257)
+...+..|+.+-+..
T Consensus 7 L~~A~~~g~~~~v~~ 21 (261)
T 2xai_A 7 MHEAAIHGHQLSLRN 21 (261)
T ss_dssp HHHHHHHTCHHHHHH
T ss_pred HHHHHHcCCHHHHHH
Confidence 444455666544333
No 396
>2lti_A Astexin1; sidechain-TO-backbone LINK, lasso peptide, antimic protein; NMR {Asticcacaulis excentricus}
Probab=27.81 E-value=25 Score=14.11 Aligned_cols=8 Identities=13% Similarity=0.601 Sum_probs=3.9
Q ss_pred CCCCCCCh
Q 041259 3 GKNIKADL 10 (257)
Q Consensus 3 ~~g~~~~~ 10 (257)
++|++||+
T Consensus 3 sqgvepdi 10 (26)
T 2lti_A 3 SQGVEPDI 10 (26)
T ss_dssp SSSSSCCB
T ss_pred ccccCCCc
Confidence 34555554
No 397
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.75 E-value=1.8e+02 Score=21.40 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=34.5
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCc--HHHHHHHHHHHHhCCCCCcHH
Q 041259 153 YTALIDGYLKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGH--LQEARVLFHEMIGRGILPDEI 221 (257)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 221 (257)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+....++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 345566666677777777777766432111 12333333334433322 344556666666555444333
No 398
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=26.68 E-value=2.2e+02 Score=21.93 Aligned_cols=144 Identities=10% Similarity=0.020 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHHHhcCc---HHHHHHHHHhcccC----CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHH
Q 041259 79 TVVTFCVLIDGLCKSGL---VREAIDYFGRMPDF----GLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTT 151 (257)
Q Consensus 79 ~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (257)
+...-..++...+..|+ .+.|.+.|+..... .++|+.... +-+.. .+..++-..+++..... .+..
T Consensus 196 ~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~---Vy~~~-~~~~~~~~~l~~~y~~s---~~~~ 268 (419)
T 3rjo_A 196 ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA---VFAVG-AQSTEGWDFLYSKYQFS---LSST 268 (419)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH---HHHHH-TTSHHHHHHHHHHHHHC---CCHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee---EEeee-eCCHHHHHHHHHHHhcC---CCHH
Confidence 44445556666777766 45677777776433 256664321 11111 11233334445544443 2555
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhc-CcHHHHHHHHH----HHHhCCCCCcHHHHHH
Q 041259 152 AYTALIDGYLKHESFKEALNLKNRMTEVGV-DLDLNAYTSLVWGLSRC-GHLQEARVLFH----EMIGRGILPDEILCIS 225 (257)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~-~~~~~a~~~~~----~~~~~~~~~~~~~~~~ 225 (257)
--..++.+++...+.....++++......+ ++ ...... +.+.... --.+.|.+.+. .+.+. +.++...+..
T Consensus 269 ek~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~-qD~~~~-~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~ 345 (419)
T 3rjo_A 269 EKSQIEFALCRTQNKEKLQWLLDESFKGDKIKT-QEFPQI-LTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAH 345 (419)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCG-GGHHHH-HHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCch-hHHHHH-HHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHH
Confidence 567788888888999988888888776553 43 233322 3333332 22344555443 33332 2233355666
Q ss_pred HHHHHHh
Q 041259 226 LLKKHYE 232 (257)
Q Consensus 226 l~~~~~~ 232 (257)
++.....
T Consensus 346 ~i~~~~~ 352 (419)
T 3rjo_A 346 MVMGTTN 352 (419)
T ss_dssp HHHHTTT
T ss_pred HHHHHhh
Confidence 6655443
No 399
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=26.34 E-value=2e+02 Score=21.27 Aligned_cols=132 Identities=10% Similarity=0.085 Sum_probs=75.7
Q ss_pred ChhhHHHHHHHHHHc-C----CCccHHHHHH---HHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcH
Q 041259 25 KFEDSKLLLSEMKEN-G----LTANTVICTT---LMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLV 96 (257)
Q Consensus 25 ~~~~a~~~~~~~~~~-~----~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (257)
+-++|..+|..+... + ..|+...... .+..+.+..+ -++++.+.+.|+.|...++.=++..+.+.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 456677777777643 1 2233222211 1222223222 24566667778888888888888888887778
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHH--HHHH----HHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccC
Q 041259 97 REAIDYFGRMPDFGLHPNVAVYTA--LIDG----LCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHES 165 (257)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~--l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (257)
+.+..+|+.+...|.. ...+.+ ++.. .....+.++...+++..... .+......++.-......
T Consensus 240 ~~~lrlwD~~l~~g~~--~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~---~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 240 GFVARVFDMIFLQGTE--VIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN---LGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHHHCTT--HHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCCcH--HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhCCc
Confidence 9999999988877633 333322 2322 22345788888888774332 244455555544444333
No 400
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=26.20 E-value=1.5e+02 Score=19.74 Aligned_cols=185 Identities=12% Similarity=-0.050 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhc
Q 041259 27 EDSKLLLSEMKENGLTANTVICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRM 106 (257)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 106 (257)
.++...+-...+ .++...-...+..+.+.+..+ +...+..+... ++...-...+.++...++.+....+.+ +
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~~-~ 89 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDERAVEPLIK-A 89 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGHHHHHH-H
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHHH-H
Confidence 344444444443 356677777777777777743 44444444443 366666667777777776544433433 3
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccHH
Q 041259 107 PDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDTTAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDLN 186 (257)
Q Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 186 (257)
.. .++...-...+.++.+.++.+ +...+..+.. .++..+-...+.++...++.+ +...+..+.+ .++..
T Consensus 90 l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~ 158 (211)
T 3ltm_A 90 LK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGW 158 (211)
T ss_dssp TT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHH
T ss_pred Hc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHH
Confidence 33 366666667777777777743 3444444443 246667677777777777643 4444444443 24666
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcC
Q 041259 187 AYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERG 234 (257)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (257)
.-...+.++.+.+. +.+...+..+.+. ++...-...+.++.+.+
T Consensus 159 vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 159 VRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 77777788888776 4555566666553 45555555566655544
No 401
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.87 E-value=1.2e+02 Score=18.63 Aligned_cols=43 Identities=7% Similarity=0.057 Sum_probs=27.7
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 041259 172 LKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR 214 (257)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 214 (257)
+|+.+....+.|+...--.-+..+...++++.|..+...+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4555556566555444444455566778888888888777763
No 402
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.63 E-value=1.1e+02 Score=17.95 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHH
Q 041259 187 AYTSLVWGLSRCGHLQEARVLFH 209 (257)
Q Consensus 187 ~~~~li~~~~~~~~~~~a~~~~~ 209 (257)
.+.-....+.+.|++++|++..+
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~ 39 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHR 39 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHH
Confidence 34455566666677766666544
No 403
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=25.31 E-value=1.7e+02 Score=20.22 Aligned_cols=15 Identities=7% Similarity=-0.088 Sum_probs=6.5
Q ss_pred HHHHHHHhcccCCCC
Q 041259 98 EAIDYFGRMPDFGLH 112 (257)
Q Consensus 98 ~a~~~~~~~~~~~~~ 112 (257)
.+..+++.+.+.|+.
T Consensus 94 ~i~~vl~~L~~~g~l 108 (221)
T 3d5l_A 94 FVEPILKKLRGQQLI 108 (221)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCC
Confidence 333444444444443
No 404
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=24.86 E-value=1.5e+02 Score=19.40 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhccc
Q 041259 83 FCVLIDGLCKSGLVREAIDYFGRMPD 108 (257)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 108 (257)
...++.-|...++.++|...++++..
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 34566666677777777777777653
No 405
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.32 E-value=1.5e+02 Score=19.17 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=5.5
Q ss_pred HHHHHHHHHHcCC
Q 041259 29 SKLLLSEMKENGL 41 (257)
Q Consensus 29 a~~~~~~~~~~~~ 41 (257)
+..+++.+.+.|.
T Consensus 49 i~~vl~~l~~~g~ 61 (159)
T 3c1d_A 49 YERVIAWCHEHGY 61 (159)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCC
Confidence 3344444444443
No 406
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=24.26 E-value=4.3e+02 Score=24.50 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041259 166 FKEALNLKNRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEILCISLLKKHYERGNMDEAIELQNE 245 (257)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (257)
.+...+.|.++.+---.-|.......+.....++++..|.+++.++.+. +|+...|..++..+...|- +-...+.++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~w-~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALGH-EHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHSC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcCC-HHHHHHHHh
Confidence 3344555555554311112222222333334566777777777777654 3566666666665554443 334444444
Q ss_pred HH
Q 041259 246 MM 247 (257)
Q Consensus 246 m~ 247 (257)
+.
T Consensus 1342 ~~ 1343 (1354)
T 3lxu_X 1342 MM 1343 (1354)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 407
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.24 E-value=1e+02 Score=17.33 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=12.1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHH
Q 041259 190 SLVWGLSRCGHLQEARVLFHEMI 212 (257)
Q Consensus 190 ~li~~~~~~~~~~~a~~~~~~~~ 212 (257)
.+.+-|+..|+++.|..+|+...
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~ 39 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVL 39 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHH
Confidence 34455555555555555555443
No 408
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.20 E-value=2.5e+02 Score=21.45 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHcccCHHHHHHHHHHH----------------HHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhC-----
Q 041259 156 LIDGYLKHESFKEALNLKNRM----------------TEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGR----- 214 (257)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~----------------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----- 214 (257)
++.+.....+.+++.++++.+ .+.....-......+.+.+...|+.+.|..++++....
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Q ss_pred CCCC--cHHHHHHHHHHHHhcCCHHHHHHHH
Q 041259 215 GILP--DEILCISLLKKHYERGNMDEAIELQ 243 (257)
Q Consensus 215 ~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (257)
+..| ....|......+...+++..+....
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~ 192 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYTS 192 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHHHH
No 409
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=22.47 E-value=1.2e+02 Score=17.58 Aligned_cols=51 Identities=6% Similarity=-0.016 Sum_probs=32.8
Q ss_pred HcccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH-----hcCcHHHHHHHHHHHHh
Q 041259 161 LKHESFKEALNLKNRMTEVGVDLDLNAYTSLVWGLS-----RCGHLQEARVLFHEMIG 213 (257)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-----~~~~~~~a~~~~~~~~~ 213 (257)
...|++-+|.++++..-.....|....|.-+|.... +.|+. |..++.+...
T Consensus 12 fn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 12 WRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 345888888888888776654444555665555432 45666 7777776654
No 410
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=22.45 E-value=1.9e+02 Score=19.81 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHh
Q 041259 186 NAYTSLVWGLSR 197 (257)
Q Consensus 186 ~~~~~li~~~~~ 197 (257)
..|...|..|..
T Consensus 160 ~~y~~WI~~y~~ 171 (221)
T 3ibx_A 160 AFYGHWIKGYSS 171 (221)
T ss_dssp TTTHHHHHHTTS
T ss_pred ChHHHHHHHhCC
Confidence 345666666553
No 411
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=22.26 E-value=1.6e+02 Score=22.58 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=20.9
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhccc
Q 041259 67 LLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPD 108 (257)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 108 (257)
+++.+.+.|+.|...++.=++..+.+.=.++.+..+|+.+..
T Consensus 218 L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~ 259 (396)
T 1fkm_A 218 LYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLS 259 (396)
T ss_dssp HHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 334444445555555555455555544455555555555443
No 412
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.07 E-value=2.6e+02 Score=21.22 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=36.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCccHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCcccHHH--HHHHHHHHH
Q 041259 16 IIWGLCIESKFEDSKLLLSEMKENGLTANTV--ICTTLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVT--FCVLIDGLC 91 (257)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~ 91 (257)
.+...+..|+.+-+.-+ .+.|..++.. .-.+.+...+..|+.+-+.- +.+.|..++... -...+...+
T Consensus 50 ~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~~~~g~t~L~~A~ 121 (437)
T 1n11_A 50 PLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL----LLENNANPNLATTAGHTPLHIAA 121 (437)
T ss_dssp HHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHH----HHHHTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH----HHhCCCCCCCCCCCCCcHHHHHH
Confidence 44555566766544444 3444333211 11223444556666554433 333343332111 112333444
Q ss_pred hcCcHHHHHHHHHh
Q 041259 92 KSGLVREAIDYFGR 105 (257)
Q Consensus 92 ~~~~~~~a~~~~~~ 105 (257)
..|+.+.+..+++.
T Consensus 122 ~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 122 REGHVETVLALLEK 135 (437)
T ss_dssp HHTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHhC
Confidence 55666666666554
No 413
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=21.80 E-value=1.6e+02 Score=18.76 Aligned_cols=147 Identities=10% Similarity=0.025 Sum_probs=64.9
Q ss_pred HHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHcccC
Q 041259 89 GLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCKKNCIERARNLFDEMPKRDMIPDT---TAYTALIDGYLKHES 165 (257)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 165 (257)
..+..|+.+.+..+++.-...--..+..-+ +.+...+..|+.+-+..+++. |..++. .-.+. +...+..|+
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~-L~~A~~~~~ 84 (179)
T 3f6q_A 11 TQCREGNAVAVRLWLDNTENDLNQGDDHGF-SPLHWACREGRSAVVEMLIMR----GARINVMNRGDDTP-LHLAASHGH 84 (179)
T ss_dssp HHHHHTCHHHHHHHHHCTTSCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTCCCH-HHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHhcCcccccccCCCCC-CHHHHHHHcCcHHHHHHHHHc----CCCCCCcCCCCCCH-HHHHHHcCC
Confidence 445668888887777653221111222222 234445567777655555543 333321 11222 233345566
Q ss_pred HHHHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcHH---HHHHHHHHHHhcCCHHHH
Q 041259 166 FKEALNLKNRMTEVGVDLDL---NAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDEI---LCISLLKKHYERGNMDEA 239 (257)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a 239 (257)
.+-+. .+.+.|..++. .-.+. +...+..|+.+-+. .+.+.|..++.. -.+.+-.+ . ...-
T Consensus 85 ~~~v~----~Ll~~g~~~~~~d~~g~t~-L~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~g~tpl~~A-~----~~~~ 150 (179)
T 3f6q_A 85 RDIVQ----KLLQYKADINAVNEHGNVP-LHYACFWGQDQVAE----DLVANGALVSICNKYGEMPVDKA-K----APLR 150 (179)
T ss_dssp HHHHH----HHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHH----HHHHTTCCSSBCCTTSCCGGGGS-C----HHHH
T ss_pred HHHHH----HHHHcCCCCCccCCCCCCH-HHHHHHcCCHHHHH----HHHHCCCCcchhccCCCCcHHHH-H----HHHH
Confidence 55443 34444544332 11222 33344556654433 344455444321 11111111 1 1233
Q ss_pred HHHHHHHHhCCCCCCC
Q 041259 240 IELQNEMMGRGLLSGS 255 (257)
Q Consensus 240 ~~~~~~m~~~~~~~~~ 255 (257)
..+.+.+.+.|..++.
T Consensus 151 ~~~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 151 ELLRERAEKMGQNLNR 166 (179)
T ss_dssp HHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHhhcCccc
Confidence 4556666666665553
No 414
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=21.68 E-value=79 Score=17.31 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 041259 26 FEDSKLLLSEMKENGLTANTVICTTLMDAYFK 57 (257)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 57 (257)
.++|.+.|..|+...-.....+|...+.....
T Consensus 14 ~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~ 45 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSNASWEQAMKMIIN 45 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHcc
Confidence 34555555555443212223445555554443
No 415
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=21.61 E-value=1.9e+02 Score=19.27 Aligned_cols=183 Identities=9% Similarity=-0.031 Sum_probs=84.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCcccHHH--HHHHHHHHHhcCcHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 041259 50 TLMDAYFKAGEPSEALSLLDEMLDSRIEVTVVT--FCVLIDGLCKSGLVREAIDYFGRMPDFGLHPNVAVYTALIDGLCK 127 (257)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (257)
+.+...+..|+.+-+ +.+.+.|..++... -...+...+..|+.+-+..+++.-...--..+..-. +.+...+.
T Consensus 27 t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~-t~L~~A~~ 101 (223)
T 2f8y_A 27 TALHLAARYSRSDAA----KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT-TPLILAAR 101 (223)
T ss_dssp CHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCC-CHHHHHHH
T ss_pred chHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC-cHHHHHHH
Confidence 345556677876544 44444554443221 123445556677777666666542211001122222 23344456
Q ss_pred cCcHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHcccCHHHHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCcH
Q 041259 128 KNCIERARNLFDEMPKRDMIPDT---TAYTALIDGYLKHESFKEALNLKNRMTEVGVDLDL---NAYTSLVWGLSRCGHL 201 (257)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~ 201 (257)
.|+.+-+..+++ .+..++. .-.+ .+...+..|+.+-+..+ .+.|..++. .-.+. +...+..|+.
T Consensus 102 ~~~~~~~~~Ll~----~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~-L~~A~~~~~~ 171 (223)
T 2f8y_A 102 LAVEGMLEDLIN----SHADVNAVDDLGKS-ALHWAAAVNNVDAAVVL----LKNGANKDMQNNREETP-LFLAAREGSY 171 (223)
T ss_dssp HTCHHHHHHHHH----TTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCCCH-HHHHHHHTCH
T ss_pred hCcHHHHHHHHH----cCCCCcCcCCCCCc-HHHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCcCH-HHHHHHcCCH
Confidence 677765555554 3332221 1122 23333456665544444 444544432 22233 3344566666
Q ss_pred HHHHHHHHHHHhCCCCCcHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 041259 202 QEARVLFHEMIGRGILPDEIL--CISLLKKHYERGNMDEAIELQNEMMGRGLLSGS 255 (257)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 255 (257)
+-+. .+.+.|..++... -.+.+....+.|..+ +++.+.+.|..+++
T Consensus 172 ~~v~----~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~----i~~~L~~~g~~~~~ 219 (223)
T 2f8y_A 172 ETAK----VLLDHFANRDITDHMDRLPRDIAQERMHHD----IVRLLDEYNLVRSP 219 (223)
T ss_dssp HHHH----HHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCSSCC
T ss_pred HHHH----HHHHcCCCCccccccCCCHHHHHHHhcchH----HHHHHHHcCCCccc
Confidence 5444 4445555444221 112334445566654 44556667766554
No 416
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=21.52 E-value=2.5e+02 Score=20.84 Aligned_cols=80 Identities=9% Similarity=0.108 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHhcCcHHHHHHHHHhcccCCCCCC-HHHH--HHHHHH----HHhcCcHHHHHHHH
Q 041259 66 SLLDEMLDSRIEVTVVTFCVLIDGLCKSGLVREAIDYFGRMPDFGLHPN-VAVY--TALIDG----LCKKNCIERARNLF 138 (257)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~--~~l~~~----~~~~~~~~~a~~~~ 138 (257)
++++.+.+.|+.|...++.=++..+.+.=.++.+..+|+.+...|.... ...+ .+++.. .....++++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 3555666678888878877788888887788999999999987764322 2222 233322 23357888888888
Q ss_pred HHhhhCC
Q 041259 139 DEMPKRD 145 (257)
Q Consensus 139 ~~~~~~~ 145 (257)
+.+....
T Consensus 310 ~~~p~~~ 316 (345)
T 2qfz_A 310 QNLPTAH 316 (345)
T ss_dssp TSCSCTT
T ss_pred HcCCCcC
Confidence 8776543
No 417
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.87 E-value=1.5e+02 Score=21.55 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=17.3
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCcH
Q 041259 174 NRMTEVGVDLDLNAYTSLVWGLSRCGHLQEARVLFHEMIGRGILPDE 220 (257)
Q Consensus 174 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (257)
+.+.+.|..++..+ .+...++.|+.+ +.+.+++.|-.||.
T Consensus 290 ~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 290 ELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 33444555444332 223334455543 33445556655543
No 418
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.50 E-value=97 Score=17.56 Aligned_cols=33 Identities=9% Similarity=0.044 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcC
Q 041259 26 FEDSKLLLSEMKEN-GLTANTVICTTLMDAYFKAG 59 (257)
Q Consensus 26 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 59 (257)
.++|...|..|+.. ++. ...+|...+...+...
T Consensus 16 ~eea~~~Fk~LL~e~~V~-p~~tWe~~~~~i~~Dp 49 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVS-AFSTWEKELHKIVFDP 49 (82)
T ss_dssp HHHHHHHHHHHHHHTTCC-SSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHcCcC-CCCCHHHHHHHHccCC
Confidence 35556666665543 332 2345555555444433
Done!