BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041261
         (119 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GSA|A Chain A, Structure Of Glutathione Synthetase Complexed With Adp And
           Glutathione
 pdb|1GSH|A Chain A, Structure Of Escherichia Coli Glutathione Synthetase At Ph
           7.5
 pdb|2GLT|A Chain A, Structure Of Escherichia Coli Glutathione Synthetase At Ph
           6.0
          Length = 316

 Score = 30.0 bits (66), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 38  YSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLL 73
           +S    Q+ P    DV++ + DPP DT F ++ Y+L
Sbjct: 67  FSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYIL 102


>pdb|1GLV|A Chain A, Three-Dimensional Structure Of The Glutathione Synthetase
           From Escherichia Coli B At 2.0 Angstroms Resolution
          Length = 303

 Score = 30.0 bits (66), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 38  YSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLL 73
           +S    Q+ P    DV++ + DPP DT F ++ Y+L
Sbjct: 67  FSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYIL 102


>pdb|3AFE|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From
           M.Tuberculosis
 pdb|3AFE|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From
           M.Tuberculosis
 pdb|3AFE|C Chain C, Crystal Structure Of The Hsaa Monooxygenase From
           M.Tuberculosis
 pdb|3AFE|D Chain D, Crystal Structure Of The Hsaa Monooxygenase From
           M.Tuberculosis
 pdb|3AFF|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From M.
           Tuberculosis
 pdb|3AFF|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From M.
           Tuberculosis
          Length = 394

 Score = 26.9 bits (58), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 25  IVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPND---TVFPHSEYLLPNLW 77
           +V  S NW  G +++ W F   P       V K   P D    + P SEY + ++W
Sbjct: 134 LVNGSWNWSSGCDHASWTFVGGP-------VIKDGRPVDFGSFLIPRSEYEIKDVW 182


>pdb|1OLR|A Chain A, The Humicola Grisea Cel12a Enzyme Structure At 1.2 A
           Resolution
 pdb|1UU4|A Chain A, X-Ray Crystal Structure Of The Catalytic Domain Of
           Humicola Grisea Cel12a In Complex With Cellobiose
 pdb|1UU5|A Chain A, X-Ray Crystal Structure Of The Catalytic Domain Of
           Humicola Grisea Cel12a Soaked With Cellotetraose
 pdb|1UU6|A Chain A, X-Ray Crystal Structure Of The Catalytic Domain Of
           Humicola Grisea Cel12a In Complex With A Soaked
           Cellopentaose
 pdb|1W2U|A Chain A, X-Ray Crystal Structure Of The Catalytic Domain Of
           Humicola Grisea Cel12a In Complex With A Soaked Thio
           Cellotetraose
          Length = 224

 Score = 25.8 bits (55), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 13/30 (43%)

Query: 72  LLPNLWSYLRCDIGWQPYYFACDERGGLHW 101
           LL NLW       GWQ  Y      GG+ W
Sbjct: 19  LLNNLWGKDTATSGWQCTYLDGTNNGGIQW 48


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.142    0.515 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,769,017
Number of Sequences: 62578
Number of extensions: 213395
Number of successful extensions: 311
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 8
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)