BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041261
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P58582|GSHB_YERPE Glutathione synthetase OS=Yersinia pestis GN=gshB PE=3 SV=1
Length = 319
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 29 SDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLL 73
DNW +S A Q+ P Y DV++ + DPP DT F ++ Y+L
Sbjct: 63 KDNW-----FSFGAEQDLPLYDLDVILMRKDPPFDTEFIYATYIL 102
>sp|Q8FE30|GSHB_ECOL6 Glutathione synthetase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=gshB PE=3 SV=1
Length = 316
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 38 YSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLL 73
Y Q+ P DV++ + DPP DT F +S Y+L
Sbjct: 67 YEFTGEQDLPLADLDVILMRKDPPFDTEFIYSTYIL 102
>sp|Q41001|BCP_PEA Blue copper protein OS=Pisum sativum PE=2 SV=1
Length = 189
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 26 VGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTV 65
VG + W G +YS WA + F V D LVF Y TV
Sbjct: 29 VGDTSGWVIGGDYSTWA-SDKTFAVGDSLVFNYGAGAHTV 67
>sp|Q88D35|GSHB_PSEPK Glutathione synthetase OS=Pseudomonas putida (strain KT2440)
GN=gshB PE=3 SV=1
Length = 317
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 38 YSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLL 73
+ + Q++P DV++ + DPP D F +S YLL
Sbjct: 68 FELGEEQDSPLAELDVILMRKDPPFDMEFVYSTYLL 103
>sp|Q9I697|GSHB_PSEAE Glutathione synthetase OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=gshB PE=3 SV=1
Length = 317
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 38 YSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLL 73
+ + A + P + DV++ + DPP D F +S YLL
Sbjct: 68 FELEAESDQPLHELDVILMRKDPPFDNEFVYSTYLL 103
>sp|P04425|GSHB_ECOLI Glutathione synthetase OS=Escherichia coli (strain K12) GN=gshB
PE=1 SV=1
Length = 316
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 38 YSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLL 73
+S Q+ P DV++ + DPP DT F ++ Y+L
Sbjct: 67 FSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYIL 102
>sp|P58578|GSHB_ECO57 Glutathione synthetase OS=Escherichia coli O157:H7 GN=gshB PE=3
SV=1
Length = 315
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 38 YSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLL 73
+S Q+ P DV++ + DPP DT F ++ Y+L
Sbjct: 67 FSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYIL 102
>sp|Q83Q91|GSHB_SHIFL Glutathione synthetase OS=Shigella flexneri GN=gshB PE=3 SV=1
Length = 316
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 38 YSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLL 73
+S Q+ P DV++ + DPP DT F ++ Y+L
Sbjct: 67 FSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYIL 102
>sp|O80517|BCB2_ARATH Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1
Length = 202
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 21 PNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKY 58
P + V + W G +YS WA F V D+L FKY
Sbjct: 25 PGAVAVTYTIEWTTGVDYSGWA-TGKTFRVGDILEFKY 61
>sp|O02849|PADI3_SHEEP Protein-arginine deiminase type-3 OS=Ovis aries GN=PADI3 PE=1 SV=1
Length = 664
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 29 SDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDP-PNDTVFPHSEYLLPNLWSYLRC 82
+ WHF + N+P VND + FK+ P +T P + +L YL C
Sbjct: 65 ARRWHFDMGSQIVVVMNSPSNVNDTVTFKFPTIPAETPRPLAYAVL-----YLTC 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.142 0.515
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,517,306
Number of Sequences: 539616
Number of extensions: 2436742
Number of successful extensions: 5108
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5103
Number of HSP's gapped (non-prelim): 17
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)