Query 041261
Match_columns 119
No_of_seqs 111 out of 772
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:22:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 1.7E-33 3.7E-38 214.3 9.5 87 17-114 16-119 (167)
2 PF02298 Cu_bind_like: Plastoc 99.9 3E-27 6.6E-32 161.5 3.7 65 32-106 1-85 (85)
3 PF00127 Copper-bind: Copper b 96.7 0.0063 1.4E-07 41.6 5.8 58 46-112 19-98 (99)
4 TIGR02656 cyanin_plasto plasto 96.5 0.01 2.3E-07 40.7 6.1 58 45-112 18-98 (99)
5 KOG3858 Ephrin, ligand for Eph 96.4 0.01 2.2E-07 47.9 6.1 43 41-84 31-86 (233)
6 PF00812 Ephrin: Ephrin; Inte 96.2 0.0029 6.3E-08 47.4 1.8 36 48-84 26-67 (145)
7 PF06525 SoxE: Sulfocyanin (So 96.1 0.023 4.9E-07 44.8 6.8 59 50-113 92-186 (196)
8 COG3794 PetE Plastocyanin [Ene 95.6 0.057 1.2E-06 39.9 6.6 58 46-112 56-126 (128)
9 PRK02710 plastocyanin; Provisi 95.5 0.1 2.2E-06 37.0 7.4 58 45-112 48-118 (119)
10 TIGR03102 halo_cynanin halocya 95.4 0.2 4.3E-06 36.1 8.6 79 18-112 20-114 (115)
11 TIGR02375 pseudoazurin pseudoa 95.3 0.086 1.9E-06 38.0 6.6 61 46-116 17-90 (116)
12 TIGR03094 sulfo_cyanin sulfocy 94.2 0.24 5.2E-06 39.1 7.0 58 50-112 91-184 (195)
13 TIGR03095 rusti_cyanin rusticy 87.6 1.5 3.3E-05 32.5 5.2 61 47-111 55-146 (148)
14 TIGR02657 amicyanin amicyanin. 84.1 5.7 0.00012 26.1 6.1 54 46-111 13-81 (83)
15 PF00116 COX2: Cytochrome C ox 70.9 12 0.00026 26.6 4.9 58 47-112 49-119 (120)
16 PF12961 DUF3850: Domain of Un 65.9 4 8.7E-05 27.5 1.5 17 45-61 26-43 (72)
17 PF13473 Cupredoxin_1: Cupredo 61.2 10 0.00022 25.6 2.9 50 46-104 37-100 (104)
18 PF02839 CBM_5_12: Carbohydrat 54.7 8 0.00017 22.1 1.3 18 38-56 1-18 (41)
19 TIGR02866 CoxB cytochrome c ox 51.8 32 0.0007 26.3 4.6 60 47-114 120-192 (201)
20 cd06555 ASCH_PF0470_like ASC-1 49.8 18 0.00038 25.9 2.6 14 46-59 30-43 (109)
21 COG4454 Uncharacterized copper 47.9 28 0.0006 26.8 3.6 25 85-112 132-156 (158)
22 PF10377 ATG11: Autophagy-rela 45.5 30 0.00065 25.2 3.3 16 46-61 41-56 (129)
23 PHA02633 hypothetical protein; 45.2 12 0.00026 24.7 1.1 28 86-115 30-57 (63)
24 COG1622 CyoA Heme/copper-type 40.3 24 0.00051 28.6 2.3 83 26-115 118-213 (247)
25 PRK02888 nitrous-oxide reducta 40.2 50 0.0011 30.5 4.6 62 46-113 557-633 (635)
26 PF11766 Candida_ALS_N: Cell-w 37.3 15 0.00033 29.8 0.8 43 41-88 2-50 (249)
27 MTH00047 COX2 cytochrome c oxi 35.0 40 0.00087 26.2 2.8 59 49-115 121-192 (194)
28 PF02362 B3: B3 DNA binding do 33.3 31 0.00067 22.5 1.7 17 45-61 71-87 (100)
29 TIGR03096 nitroso_cyanin nitro 32.8 84 0.0018 23.4 4.1 46 46-95 63-120 (135)
30 KOG3416 Predicted nucleic acid 32.0 31 0.00067 25.9 1.6 33 22-57 39-71 (134)
31 MTH00140 COX2 cytochrome c oxi 31.7 41 0.00089 26.4 2.4 27 85-115 188-216 (228)
32 PF07791 DUF1629: Protein of u 31.4 17 0.00037 26.9 0.2 29 68-96 81-116 (124)
33 PF15436 PGBA_N: Plasminogen-b 31.0 30 0.00065 27.8 1.5 64 46-116 78-178 (218)
34 PF14478 DUF4430: Domain of un 30.2 12 0.00026 23.8 -0.7 28 30-57 39-68 (68)
35 PF02933 CDC48_2: Cell divisio 30.1 35 0.00075 21.3 1.4 17 45-61 16-32 (64)
36 TIGR02695 azurin azurin. Azuri 28.6 33 0.00071 25.4 1.3 19 85-107 101-120 (125)
37 cd05810 CBM20_alpha_MTH Glucan 27.3 43 0.00092 22.7 1.6 44 15-59 10-63 (97)
38 PF14326 DUF4384: Domain of un 27.0 47 0.001 21.7 1.7 17 47-63 2-18 (83)
39 MTH00168 COX2 cytochrome c oxi 26.3 59 0.0013 25.6 2.4 27 85-115 188-216 (225)
40 MTH00154 COX2 cytochrome c oxi 26.2 59 0.0013 25.7 2.4 26 85-114 188-215 (227)
41 PTZ00047 cytochrome c oxidase 25.2 76 0.0017 24.4 2.8 26 85-114 121-148 (162)
42 PF00084 Sushi: Sushi domain ( 24.9 74 0.0016 18.1 2.2 16 46-61 17-32 (56)
43 smart00026 EPEND Ependymins. E 24.7 1.8E+02 0.0039 22.8 4.8 49 55-118 27-83 (191)
44 MTH00129 COX2 cytochrome c oxi 24.6 57 0.0012 25.8 2.1 26 85-114 188-215 (230)
45 PF04225 OapA: Opacity-associa 23.5 88 0.0019 21.0 2.6 16 46-61 41-56 (85)
46 PF14801 GCD14_N: tRNA methylt 22.4 71 0.0015 20.5 1.8 24 46-73 4-27 (54)
47 MTH00117 COX2 cytochrome c oxi 22.3 83 0.0018 24.8 2.6 26 85-114 188-215 (227)
48 PF00686 CBM_20: Starch bindin 22.3 81 0.0018 20.8 2.2 40 20-60 15-68 (96)
49 COG2046 MET3 ATP sulfurylase ( 21.9 1.8E+02 0.0038 25.6 4.6 65 31-111 75-156 (397)
50 MTH00098 COX2 cytochrome c oxi 21.9 81 0.0018 24.9 2.5 26 85-114 188-215 (227)
51 smart00495 ChtBD3 Chitin-bindi 21.4 54 0.0012 18.6 1.0 18 38-56 1-18 (41)
52 MTH00139 COX2 cytochrome c oxi 21.3 79 0.0017 24.8 2.3 26 85-114 188-215 (226)
53 cd05820 CBM20_novamyl Novamyl 21.3 77 0.0017 21.6 2.0 43 17-60 15-70 (103)
54 smart00032 CCP Domain abundant 20.9 1.1E+02 0.0024 17.0 2.3 16 46-61 18-33 (57)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=214.26 Aligned_cols=87 Identities=31% Similarity=0.633 Sum_probs=80.6
Q ss_pred CCCCCcEEEecCCCCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC------------
Q 041261 17 DDDGPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI------------ 84 (119)
Q Consensus 17 ~~~~a~~~~VGg~~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~------------ 84 (119)
..+.|++|+|||+.||+.+.||++||+ +++|+|||+|+|+|+++ +|||+|| ++++|++|+.
T Consensus 16 ~~~~a~~~~VGd~~GW~~~~~Y~~WA~-~k~F~VGD~LvF~Y~~~-----~hnV~~V-~~~~Y~~C~~~~pi~~~tsG~d 88 (167)
T PLN03148 16 SATTATDHIVGANKGWNPGINYTLWAN-NQTFYVGDLISFRYQKT-----QYNVFEV-NQTGYDNCTTEGAAGNWTSGKD 88 (167)
T ss_pred hhccceEEEeCCCCCcCCCCChhHhhc-CCCCccCCEEEEEecCC-----CceEEEE-ChHHcCcccCCCCcceecCCCc
Confidence 466799999999999999999999998 69999999999999998 7999999 9999999997
Q ss_pred -----CCcceEEEccCCCCCCCCCCcceEEEEecC
Q 041261 85 -----GWQPYYFACDERGGLHWRDGRMKFMVLPLL 114 (119)
Q Consensus 85 -----~~G~~YFiCg~~~g~HC~~G~mKl~V~p~~ 114 (119)
++|++||||+ . +||+.| |||+|.+.+
T Consensus 89 ~v~L~~~G~~YFIcg-~--ghC~~G-mKl~I~V~~ 119 (167)
T PLN03148 89 FIPLNKAKRYYFICG-N--GQCFNG-MKVTILVHP 119 (167)
T ss_pred EEEecCCccEEEEcC-C--CccccC-CEEEEEEcC
Confidence 8899999999 6 799999 999988654
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.93 E-value=3e-27 Score=161.51 Aligned_cols=65 Identities=35% Similarity=0.615 Sum_probs=53.1
Q ss_pred CCCCC---CchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-----------------CCcceEE
Q 041261 32 WHFGF---NYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-----------------GWQPYYF 91 (119)
Q Consensus 32 W~~~~---nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-----------------~~G~~YF 91 (119)
|+++. +|++||+ +++|+|||+|+|+|+++ +|+|+|| ++++|++|+. ++|++||
T Consensus 1 W~~~~~~~~Y~~Wa~-~~~F~vGD~LvF~y~~~-----~h~V~~V-~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YF 73 (85)
T PF02298_consen 1 WTIPTNASNYTDWAS-GKTFRVGDTLVFNYDSG-----QHSVVEV-SKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYF 73 (85)
T ss_dssp SSSSSSTTHHHHHHC-TS-BETTEEEEEE--TT-----TB-EEEE-SHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEE
T ss_pred CccCCCccchhHhhc-CCcEeCCCEEEEEecCC-----CCeEEec-ChhhCccCCCCCceecccCCCEEEEeCCCcCeEE
Confidence 88887 8999998 69999999999999998 7999999 7999999998 8899999
Q ss_pred EccCCCCCCCCCCcc
Q 041261 92 ACDERGGLHWRDGRM 106 (119)
Q Consensus 92 iCg~~~g~HC~~G~m 106 (119)
||+++ +||+.| |
T Consensus 74 ic~~~--~HC~~G-q 85 (85)
T PF02298_consen 74 ICGVP--GHCQKG-Q 85 (85)
T ss_dssp E--ST--TTTTTT--
T ss_pred EeCCC--Cccccc-C
Confidence 99999 999999 8
No 3
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.67 E-value=0.0063 Score=41.60 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=41.7
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecCcc-cCcc------------cCC---------CCcceEEEccCCCCCCCCC
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW-SYLR------------CDI---------GWQPYYFACDERGGLHWRD 103 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~-~Y~~------------C~~---------~~G~~YFiCg~~~g~HC~~ 103 (119)
-++++||++.|...... .|||....+.. .-.. ... ++|.|.|+|. + |...
T Consensus 19 i~V~~G~tV~~~n~~~~----~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P---H~~~ 90 (99)
T PF00127_consen 19 ITVKAGDTVTFVNNDSM----PHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P---HYEA 90 (99)
T ss_dssp EEEETTEEEEEEEESSS----SBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T---TGGT
T ss_pred EEECCCCEEEEEECCCC----CceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C---Cccc
Confidence 46789999999995332 79999984321 0000 111 8999999999 8 9999
Q ss_pred CcceEEEEe
Q 041261 104 GRMKFMVLP 112 (119)
Q Consensus 104 G~mKl~V~p 112 (119)
| |+=.|.+
T Consensus 91 G-M~G~i~V 98 (99)
T PF00127_consen 91 G-MVGTIIV 98 (99)
T ss_dssp T-SEEEEEE
T ss_pred C-CEEEEEE
Confidence 9 9877764
No 4
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=96.52 E-value=0.01 Score=40.67 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=40.4
Q ss_pred CCCeEeCcEEEEEeCCCCCCccccceEEecCcc----------cCcccCC-------------CCcceEEEccCCCCCCC
Q 041261 45 NAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW----------SYLRCDI-------------GWQPYYFACDERGGLHW 101 (119)
Q Consensus 45 ~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~----------~Y~~C~~-------------~~G~~YFiCg~~~g~HC 101 (119)
.-++++||++.|.-+.. ..|+|+.. +.. .+..=+. .+|.|-|.|. .|+
T Consensus 18 ~i~v~~G~~V~~~N~~~----~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~G~y~y~C~----~H~ 88 (99)
T TIGR02656 18 KISIAAGDTVEWVNNKG----GPHNVVFD-EDAVPAGVKELAKSLSHKDLLNSPGESYEVTFSTPGTYTFYCE----PHR 88 (99)
T ss_pred EEEECCCCEEEEEECCC----CCceEEEC-CCCCccchhhhcccccccccccCCCCEEEEEeCCCEEEEEEcC----Ccc
Confidence 35889999999995433 27998875 221 1100010 8899999998 499
Q ss_pred CCCcceEEEEe
Q 041261 102 RDGRMKFMVLP 112 (119)
Q Consensus 102 ~~G~mKl~V~p 112 (119)
+.| |+-.|.+
T Consensus 89 ~aG-M~G~I~V 98 (99)
T TIGR02656 89 GAG-MVGKITV 98 (99)
T ss_pred ccC-CEEEEEE
Confidence 999 9988864
No 5
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=96.39 E-value=0.01 Score=47.86 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=27.7
Q ss_pred hhcCCCCeEe---------CcEEEEEeCCCCCC----ccccceEEecCcccCcccCC
Q 041261 41 WAFQNAPFYV---------NDVLVFKYDPPNDT----VFPHSEYLLPNLWSYLRCDI 84 (119)
Q Consensus 41 WA~~~k~F~v---------GD~LvF~Y~~~~~~----~~~h~V~~V~~~~~Y~~C~~ 84 (119)
|-+.|..|+. ||.|-+--+....+ ..++=+|+| ++++|+.|+.
T Consensus 31 WNSSNp~F~~~d~vI~v~igD~ldIiCP~~e~~~~~~~E~yilYmV-~~~~y~~C~~ 86 (233)
T KOG3858|consen 31 WNSSNPRFRRGDYVIYVQIGDYLDIICPHYEEGGPEGYEYYILYMV-SEEEYDLCEL 86 (233)
T ss_pred ecCCCcceecCCceEEeccCCEEEEECCCCCCCCCCcceEEEEEEe-ChHHhhhhhc
Confidence 4444666655 78887744332222 234567788 9999999996
No 6
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=96.16 E-value=0.0029 Score=47.43 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=24.5
Q ss_pred eEeCcEEEEEeCCCCCC------ccccceEEecCcccCcccCC
Q 041261 48 FYVNDVLVFKYDPPNDT------VFPHSEYLLPNLWSYLRCDI 84 (119)
Q Consensus 48 F~vGD~LvF~Y~~~~~~------~~~h~V~~V~~~~~Y~~C~~ 84 (119)
+++||.|-|--+..... .....+++| ++++|+.|+.
T Consensus 26 V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~V-s~~~y~~C~~ 67 (145)
T PF00812_consen 26 VRIGDYLDIICPHYEPGGPPPEEYEYYILYMV-SEEGYESCSL 67 (145)
T ss_dssp E-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE--HHHHHHTBS
T ss_pred ecCCCEEEEECCCCCCCCCCCCCceEEEEEEE-cHHHhcccCC
Confidence 45699999976654332 256789999 9999999996
No 7
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.14 E-value=0.023 Score=44.81 Aligned_cols=59 Identities=14% Similarity=0.105 Sum_probs=45.5
Q ss_pred eCcEEEEEeCCCCCCccccceEEecCcccCcccCC------------------------------------CCcceEEEc
Q 041261 50 VNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI------------------------------------GWQPYYFAC 93 (119)
Q Consensus 50 vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~------------------------------------~~G~~YFiC 93 (119)
+|-.+.|++... ..+.|+++.|++...+..+.. .+|.||++|
T Consensus 92 AGw~V~i~f~N~--~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC 169 (196)
T PF06525_consen 92 AGWNVQITFTNQ--ESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC 169 (196)
T ss_pred CCCEEEEEEEcC--CCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence 488888888754 246999999966654444422 899999999
Q ss_pred cCCCCCCCCCCcceEEEEec
Q 041261 94 DERGGLHWRDGRMKFMVLPL 113 (119)
Q Consensus 94 g~~~g~HC~~G~mKl~V~p~ 113 (119)
+.+ +|=+.| |-..+.+.
T Consensus 170 ~ip--GHA~sG-Mw~~LiVs 186 (196)
T PF06525_consen 170 GIP--GHAESG-MWGVLIVS 186 (196)
T ss_pred cCC--ChhhcC-CEEEEEEe
Confidence 999 999999 97776643
No 8
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=95.59 E-value=0.057 Score=39.87 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=42.1
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecCc----ccCcccCC---------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNL----WSYLRCDI---------GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~----~~Y~~C~~---------~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
-+..+||++.|.+.... .|||..+... .+...=.. .+|.|.|+|.- |=..| ||=.|.+
T Consensus 56 v~v~pGDTVtw~~~d~~----~Hnv~~~~~~~~~g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P----H~~~g-M~G~IvV 126 (128)
T COG3794 56 VTVKPGDTVTWVNTDSV----GHNVTAVGGMDPEGSGTLKAGINESFTHTFETPGEYTYYCTP----HPGMG-MKGKIVV 126 (128)
T ss_pred EEECCCCEEEEEECCCC----CceEEEeCCCCcccccccccCCCcceEEEecccceEEEEecc----CCCCC-cEEEEEe
Confidence 58899999999998762 5999998544 11111110 79999999994 67788 8877764
No 9
>PRK02710 plastocyanin; Provisional
Probab=95.49 E-value=0.1 Score=37.05 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=39.3
Q ss_pred CCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccC--C-----------CCcceEEEccCCCCCCCCCCcceEEEE
Q 041261 45 NAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCD--I-----------GWQPYYFACDERGGLHWRDGRMKFMVL 111 (119)
Q Consensus 45 ~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~--~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V~ 111 (119)
.-++.+||++.|.-.... .|++..- ....+..=+ . .+|.|-|+|. .|=+.| |+-.|.
T Consensus 48 ~i~v~~Gd~V~~~N~~~~----~H~v~~~-~~~~~~~~~~~~~pg~t~~~tF~~~G~y~y~C~----~H~~~g-M~G~I~ 117 (119)
T PRK02710 48 TLTIKAGDTVKWVNNKLA----PHNAVFD-GAKELSHKDLAFAPGESWEETFSEAGTYTYYCE----PHRGAG-MVGKIT 117 (119)
T ss_pred EEEEcCCCEEEEEECCCC----CceEEec-CCccccccccccCCCCEEEEEecCCEEEEEEcC----CCccCC-cEEEEE
Confidence 358899999999864332 7998643 222210000 1 8899999998 388889 998887
Q ss_pred e
Q 041261 112 P 112 (119)
Q Consensus 112 p 112 (119)
+
T Consensus 118 V 118 (119)
T PRK02710 118 V 118 (119)
T ss_pred E
Confidence 5
No 10
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=95.35 E-value=0.2 Score=36.09 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=52.3
Q ss_pred CCCCcEEEec--CCC-CCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccC----C------
Q 041261 18 DDGPNKIIVG--SSD-NWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCD----I------ 84 (119)
Q Consensus 18 ~~~a~~~~VG--g~~-gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~----~------ 84 (119)
.+...+..|| ++. +..+.+. .-++++||++.|..+... ..|+|.-. +...|+.=. .
T Consensus 20 ~~~~~~v~~G~~~~~g~~~F~P~-------~ltV~~GdTVtw~~~~d~---~~HnV~s~-~~~~f~s~~~~~~~G~t~s~ 88 (115)
T TIGR03102 20 GQDEVTVDVGAEANGGGFAFDPP-------AIRVDPGTTVVWEWTGEG---GGHNVVSD-GDGDLDESERVSEEGTTYEH 88 (115)
T ss_pred CCceEEEEecccCCCCceeEeCC-------EEEECCCCEEEEEECCCC---CCEEEEEC-CCCCccccccccCCCCEEEE
Confidence 3456678888 222 2444332 358899999999986421 16999764 445565321 1
Q ss_pred ---CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 85 ---GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 85 ---~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
++|.|-|+|.. |=..| ||=.|.+
T Consensus 89 Tf~~~G~Y~Y~C~p----H~~~g-M~G~I~V 114 (115)
T TIGR03102 89 TFEEPGIYLYVCVP----HEALG-MKGAVVV 114 (115)
T ss_pred EecCCcEEEEEccC----CCCCC-CEEEEEE
Confidence 89999999993 66678 9887764
No 11
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.31 E-value=0.086 Score=37.96 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=43.3
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecC----c-ccCcc-----cCC---CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPN----L-WSYLR-----CDI---GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~----~-~~Y~~-----C~~---~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
-++++||++.|..... .|+|..+++ . ..+.. -.. ++|.|-|.|. .|=..| |+=.|.+
T Consensus 17 v~V~~GdTV~f~n~d~-----~Hnv~~~~~~~p~g~~~~~s~~g~~~~~tF~~~G~Y~Y~C~----pH~~~G-M~G~V~V 86 (116)
T TIGR02375 17 IRAAPGDTVTFVPTDK-----GHNVETIKGMIPEGAEAFKSKINEEYTVTVTEEGVYGVKCT----PHYGMG-MVALIQV 86 (116)
T ss_pred EEECCCCEEEEEECCC-----CeeEEEccCCCcCCcccccCCCCCEEEEEeCCCEEEEEEcC----CCccCC-CEEEEEE
Confidence 4778999999999766 599887522 1 11221 000 8999999999 388999 9988887
Q ss_pred cCCC
Q 041261 113 LLRR 116 (119)
Q Consensus 113 ~~~~ 116 (119)
-..|
T Consensus 87 g~~~ 90 (116)
T TIGR02375 87 GDPP 90 (116)
T ss_pred CCCC
Confidence 5543
No 12
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=94.22 E-value=0.24 Score=39.08 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=40.9
Q ss_pred eCcEEEEEeCCCCCCccccceEEecCcccCcccCC------------------------------------CCcceEEEc
Q 041261 50 VNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI------------------------------------GWQPYYFAC 93 (119)
Q Consensus 50 vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~------------------------------------~~G~~YFiC 93 (119)
.|=++.+++...+ .+.||...|++...+-.--. ++|.||++|
T Consensus 91 aGw~V~V~f~N~e--~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~~~~G~YwlvC 168 (195)
T TIGR03094 91 AGWNVYVTFTNYE--SLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWNDTSAGKYWLVC 168 (195)
T ss_pred CCCEEEEEEEcCC--CCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEeccCCCeeEEEEc
Confidence 3767777665432 44899999877664431111 899999999
Q ss_pred cCCCCCCCCCCcceEEEEe
Q 041261 94 DERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 94 g~~~g~HC~~G~mKl~V~p 112 (119)
+.+ +|-+.| |=..+.+
T Consensus 169 gip--GHAesG-Mw~~lIV 184 (195)
T TIGR03094 169 GIT--GHAESG-MWAVVIV 184 (195)
T ss_pred ccC--ChhhcC-cEEEEEE
Confidence 999 999999 9655443
No 13
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=87.61 E-value=1.5 Score=32.53 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=39.1
Q ss_pred CeEeCcEEEEEeCCCCCCccccceEEecCcccC------------ccc--------------CC-----CCcceEEEccC
Q 041261 47 PFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSY------------LRC--------------DI-----GWQPYYFACDE 95 (119)
Q Consensus 47 ~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y------------~~C--------------~~-----~~G~~YFiCg~ 95 (119)
+++.||++.|....... ...|+..+......+ ..| ++ ++|.|||.|..
T Consensus 55 ~v~~Gd~V~v~v~N~~~-~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~~ 133 (148)
T TIGR03095 55 VIPEGVTVHFTVINTDT-DSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCTY 133 (148)
T ss_pred EEcCCCEEEEEEEeCCC-CccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCCCeEEEEEcCC
Confidence 35779999998876522 235776664111111 112 11 78999999999
Q ss_pred CCCCCCCCCcceEEEE
Q 041261 96 RGGLHWRDGRMKFMVL 111 (119)
Q Consensus 96 ~~g~HC~~G~mKl~V~ 111 (119)
+ +|=+.| |.=.|.
T Consensus 134 p--gH~~~G-M~G~ii 146 (148)
T TIGR03095 134 P--GHAENG-MYGKIV 146 (148)
T ss_pred h--hHHHCC-CEEEEE
Confidence 9 898889 765443
No 14
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=84.12 E-value=5.7 Score=26.07 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=35.1
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecCcc----cCcccCC-----------CCcceEEEccCCCCCCCCCCcceEEE
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW----SYLRCDI-----------GWQPYYFACDERGGLHWRDGRMKFMV 110 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~----~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V 110 (119)
-++++||+|.|.-.... .|||... +.. ++..=.. +||.|-|.|... - . ||=.|
T Consensus 13 i~v~~GdtVt~~N~d~~----~Hnv~~~-~g~~~~~~~~~~~~~~g~~~~~tf~~~G~y~y~C~~H--p----~-M~G~v 80 (83)
T TIGR02657 13 LHVKVGDTVTWINREAM----PHNVHFV-AGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTPH--P----F-MRGKV 80 (83)
T ss_pred EEECCCCEEEEEECCCC----CccEEec-CCCCccccccccccCCCCEEEEECCCCEEEEEEcCCC--C----C-CeEEE
Confidence 36788999999876442 6999866 322 1211111 889999999976 2 3 66555
Q ss_pred E
Q 041261 111 L 111 (119)
Q Consensus 111 ~ 111 (119)
.
T Consensus 81 ~ 81 (83)
T TIGR02657 81 V 81 (83)
T ss_pred E
Confidence 4
No 15
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=70.86 E-value=12 Score=26.65 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=36.2
Q ss_pred CeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-----------CCcceEEEccCCCCCCCCCC--cceEEEEe
Q 041261 47 PFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-----------GWQPYYFACDERGGLHWRDG--RMKFMVLP 112 (119)
Q Consensus 47 ~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G--~mKl~V~p 112 (119)
.+.+|+.+.|.-.+. |- .|+... |...-=..+.+ +||.|++.|..- |-.| .|+..|.+
T Consensus 49 ~lp~g~~v~~~ltS~-DV--iHsf~i-p~~~~k~d~~PG~~~~~~~~~~~~G~y~~~C~e~----CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 49 VLPAGQPVRFHLTSE-DV--IHSFWI-PELGIKMDAIPGRTNSVTFTPDKPGTYYGQCAEY----CGAGHSFMPGKVIV 119 (120)
T ss_dssp EEETTSEEEEEEEES-SS---EEEEE-TTCTEEEEEBTTCEEEEEEEESSSEEEEEEE-SS----SSTTGGG-EEEEEE
T ss_pred cccccceEeEEEEcC-Cc--cccccc-cccCcccccccccceeeeeeeccCCcEEEcCccc----cCcCcCCCeEEEEE
Confidence 446799999988864 33 365443 23221111222 999999999965 9999 88887764
No 16
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=65.92 E-value=4 Score=27.47 Aligned_cols=17 Identities=35% Similarity=0.710 Sum_probs=13.2
Q ss_pred CCCeEeCcEEEEE-eCCC
Q 041261 45 NAPFYVNDVLVFK-YDPP 61 (119)
Q Consensus 45 ~k~F~vGD~LvF~-Y~~~ 61 (119)
++.|+|||.|+++ |+.+
T Consensus 26 DRdf~VGD~L~L~E~~~~ 43 (72)
T PF12961_consen 26 DRDFQVGDILVLREWDNG 43 (72)
T ss_pred CCCCCCCCEEEEEEecCC
Confidence 5799999999984 5443
No 17
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=61.21 E-value=10 Score=25.62 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=25.4
Q ss_pred CCeEeCc--EEEEEeCCCCCCccccceEEecCcccCc-ccCC-----------CCcceEEEccCCCCCCCCCC
Q 041261 46 APFYVND--VLVFKYDPPNDTVFPHSEYLLPNLWSYL-RCDI-----------GWQPYYFACDERGGLHWRDG 104 (119)
Q Consensus 46 k~F~vGD--~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~-~C~~-----------~~G~~YFiCg~~~g~HC~~G 104 (119)
-+++.|+ +|+|+-.... .|++..- + -+.+ .=.. ++|.|=|.|+.. .+ -.|
T Consensus 37 i~v~~G~~v~l~~~N~~~~----~h~~~i~-~-~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~--~~-m~G 100 (104)
T PF13473_consen 37 ITVKAGQPVTLTFTNNDSR----PHEFVIP-D-LGISKVLPPGETATVTFTPLKPGEYEFYCTMH--PN-MKG 100 (104)
T ss_dssp EEEETTCEEEEEEEE-SSS-----EEEEEG-G-GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS---T-TB-
T ss_pred EEEcCCCeEEEEEEECCCC----cEEEEEC-C-CceEEEECCCCEEEEEEcCCCCEEEEEEcCCC--Cc-cee
Confidence 4788899 6666554332 4766443 2 1110 0000 999999999987 55 455
No 18
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=54.74 E-value=8 Score=22.13 Aligned_cols=18 Identities=17% Similarity=0.599 Sum_probs=10.1
Q ss_pred chhhhcCCCCeEeCcEEEE
Q 041261 38 YSVWAFQNAPFYVNDVLVF 56 (119)
Q Consensus 38 Y~~WA~~~k~F~vGD~LvF 56 (119)
|..|.. ++....||.+.|
T Consensus 1 ~p~W~~-~~~Y~~Gd~V~~ 18 (41)
T PF02839_consen 1 YPAWDP-GTTYNAGDRVSY 18 (41)
T ss_dssp --B--T-TCEE-TT-EEEE
T ss_pred CCCcCC-CCEEcCCCEEEE
Confidence 467887 689999999986
No 19
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=51.84 E-value=32 Score=26.28 Aligned_cols=60 Identities=23% Similarity=0.223 Sum_probs=38.7
Q ss_pred CeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-----------CCcceEEEccCCCCCCCCCC--cceEEEEec
Q 041261 47 PFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-----------GWQPYYFACDERGGLHWRDG--RMKFMVLPL 113 (119)
Q Consensus 47 ~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G--~mKl~V~p~ 113 (119)
.+.+|+.+.|.-.+. | | .|+-.. |+...-..+-. ++|.|++.|.. .|-.| .|++.|.+.
T Consensus 120 ~vp~g~~v~~~~ts~-D-V-~Hsf~i-p~~~~k~da~PG~~~~~~~~~~~~G~y~~~c~e----~cG~~h~~M~~~v~v~ 191 (201)
T TIGR02866 120 VVPAGTPVRLQVTSK-D-V-IHSFWV-PELGGKIDAIPGQYNALWFNADEPGVYYGYCAE----LCGAGHSLMLFKVVVV 191 (201)
T ss_pred EEEcCCEEEEEEEeC-c-h-hhcccc-cccCceEEecCCcEEEEEEEeCCCEEEEEEehh----hCCcCccCCeEEEEEE
Confidence 467799999988764 2 2 355333 23222111111 99999999996 47776 798888876
Q ss_pred C
Q 041261 114 L 114 (119)
Q Consensus 114 ~ 114 (119)
+
T Consensus 192 ~ 192 (201)
T TIGR02866 192 E 192 (201)
T ss_pred C
Confidence 5
No 20
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=49.75 E-value=18 Score=25.92 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=11.6
Q ss_pred CCeEeCcEEEEEeC
Q 041261 46 APFYVNDVLVFKYD 59 (119)
Q Consensus 46 k~F~vGD~LvF~Y~ 59 (119)
+.|++||.|+|+=-
T Consensus 30 ~~ikvGD~I~f~~~ 43 (109)
T cd06555 30 QQIKVGDKILFNDL 43 (109)
T ss_pred hcCCCCCEEEEEEc
Confidence 47999999999553
No 21
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=47.90 E-value=28 Score=26.77 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.4
Q ss_pred CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 85 GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 85 ~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
.+|.|=|+|.+| +|=+.| |.--|+.
T Consensus 132 ~~g~ye~~C~iP--GHy~AG-M~g~itV 156 (158)
T COG4454 132 GAGKYEFACNIP--GHYEAG-MVGEITV 156 (158)
T ss_pred CCccEEEEecCC--CcccCC-cEEEEEe
Confidence 699999999999 999999 9877765
No 22
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=45.50 E-value=30 Score=25.18 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=14.7
Q ss_pred CCeEeCcEEEEEeCCC
Q 041261 46 APFYVNDVLVFKYDPP 61 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~ 61 (119)
+.|++||...|-++..
T Consensus 41 ~~f~~GDlvLflpt~~ 56 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRN 56 (129)
T ss_pred ecCCCCCEEEEEecCC
Confidence 5899999999999987
No 23
>PHA02633 hypothetical protein; Provisional
Probab=45.18 E-value=12 Score=24.67 Aligned_cols=28 Identities=4% Similarity=0.002 Sum_probs=20.0
Q ss_pred CcceEEEccCCCCCCCCCCcceEEEEecCC
Q 041261 86 WQPYYFACDERGGLHWRDGRMKFMVLPLLR 115 (119)
Q Consensus 86 ~G~~YFiCg~~~g~HC~~G~mKl~V~p~~~ 115 (119)
.|. |||.+.++.+|..++++|.|.+-.+
T Consensus 30 SGi--YiC~~rn~t~c~~~si~l~V~~~~~ 57 (63)
T PHA02633 30 SGI--YMCITKNETYSDMMKFDLCICLRIE 57 (63)
T ss_pred CcE--EEEEEcCCCeeEEEEEEEEEeeccc
Confidence 454 5677766699999878887776543
No 24
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=40.27 E-value=24 Score=28.55 Aligned_cols=83 Identities=22% Similarity=0.293 Sum_probs=48.4
Q ss_pred ecCCCCCCCC-CCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEE---------ecCcccCcccCC-CCcceEEEcc
Q 041261 26 VGSSDNWHFG-FNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYL---------LPNLWSYLRCDI-GWQPYYFACD 94 (119)
Q Consensus 26 VGg~~gW~~~-~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~---------V~~~~~Y~~C~~-~~G~~YFiCg 94 (119)
+|=.-.|.+. +++.-+....-.+.+|..+.|+-.+. |- .|+-.. +|.....-.=.. ++|.|+.+|.
T Consensus 118 ~~~qw~W~f~Yp~~~~~t~n~l~lPv~~~V~f~ltS~-DV--iHsF~IP~l~~k~d~iPG~~~~~~~~~~~~G~Y~g~Ca 194 (247)
T COG1622 118 TAYQWKWLFIYPDYGIATVNELVLPVGRPVRFKLTSA-DV--IHSFWIPQLGGKIDAIPGMTTELWLTANKPGTYRGICA 194 (247)
T ss_pred EEEEEEEEEEccCcCccccceEEEeCCCeEEEEEEec-hh--ceeEEecCCCceeeecCCceEEEEEecCCCeEEEEEcH
Confidence 3333345543 12334444334667899999999875 33 354332 222111111111 9999999999
Q ss_pred CCCCCCCCCC--cceEEEEecCC
Q 041261 95 ERGGLHWRDG--RMKFMVLPLLR 115 (119)
Q Consensus 95 ~~~g~HC~~G--~mKl~V~p~~~ 115 (119)
. .|-.| .|++.|.+.++
T Consensus 195 e----~CG~gH~~M~~~v~vvs~ 213 (247)
T COG1622 195 E----YCGPGHSFMRFKVIVVSQ 213 (247)
T ss_pred h----hcCCCcccceEEEEEEcH
Confidence 5 59888 89998887654
No 25
>PRK02888 nitrous-oxide reductase; Validated
Probab=40.18 E-value=50 Score=30.47 Aligned_cols=62 Identities=11% Similarity=0.020 Sum_probs=35.3
Q ss_pred CCeEeCcEEEEEeCCCCC--CccccceEEecCcc--------cCcccCC---CCcceEEEccCCCCCCCCCC--cceEEE
Q 041261 46 APFYVNDVLVFKYDPPND--TVFPHSEYLLPNLW--------SYLRCDI---GWQPYYFACDERGGLHWRDG--RMKFMV 110 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~--~~~~h~V~~V~~~~--------~Y~~C~~---~~G~~YFiCg~~~g~HC~~G--~mKl~V 110 (119)
-++++||.+.|...+-.. .+ .|....- ... ...+=.+ +||.|++.|+.- |-.+ .|+-.|
T Consensus 557 i~Vk~GDeVt~~lTN~d~~~DV-iHGF~Ip-~~nI~~dv~PG~t~svtF~adkPGvy~~~Ctef----CGa~H~~M~G~~ 630 (635)
T PRK02888 557 FTVKQGDEVTVIVTNLDKVEDL-THGFAIP-NYGVNMEVAPQATASVTFTADKPGVYWYYCTWF----CHALHMEMRGRM 630 (635)
T ss_pred EEecCCCEEEEEEEeCCccccc-ccceeec-ccCccEEEcCCceEEEEEEcCCCEEEEEECCcc----cccCcccceEEE
Confidence 467889999998886311 01 3443332 100 0000001 999999999974 7766 465555
Q ss_pred Eec
Q 041261 111 LPL 113 (119)
Q Consensus 111 ~p~ 113 (119)
.+.
T Consensus 631 iVe 633 (635)
T PRK02888 631 LVE 633 (635)
T ss_pred EEE
Confidence 443
No 26
>PF11766 Candida_ALS_N: Cell-wall agglutinin N-terminal ligand-sugar binding ; InterPro: IPR024672 This N-terminal domain is likely to be the sugar or ligand binding domain of yeast alpha-agglutinin [] and agglutinin-like (ALS) proteins.; PDB: 2YLH_A 2Y7M_A 2Y7L_A 2Y7O_A 2Y7N_A.
Probab=37.32 E-value=15 Score=29.85 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=27.5
Q ss_pred hhcCCCCeEeCcEE------EEEeCCCCCCccccceEEecCcccCcccCCCCcc
Q 041261 41 WAFQNAPFYVNDVL------VFKYDPPNDTVFPHSEYLLPNLWSYLRCDIGWQP 88 (119)
Q Consensus 41 WA~~~k~F~vGD~L------vF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~~~G~ 88 (119)
|+-.+...+.||+. |||+... +-.|.+..+...|..|.+.+|.
T Consensus 2 W~Idgs~v~~GDtFtL~MPcVfKf~t~-----~~sv~L~~~~~~yAtC~~~~Ge 50 (249)
T PF11766_consen 2 WSIDGSNVSPGDTFTLTMPCVFKFTTS-----QTSVDLTAGGTTYATCTFQSGE 50 (249)
T ss_dssp EEEETTT--TT-EEEEEEETEEEESSS------SEEEEEETTEEEEEEEEE--T
T ss_pred ccccccccCCCCEEEEecceEEEEecC-----CCEEEEEeCCEEEEEecccCce
Confidence 44435688999987 7888876 3566666688999999985554
No 27
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.96 E-value=40 Score=26.15 Aligned_cols=59 Identities=15% Similarity=0.037 Sum_probs=37.2
Q ss_pred EeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-----------CCcceEEEccCCCCCCCCCC--cceEEEEecCC
Q 041261 49 YVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-----------GWQPYYFACDERGGLHWRDG--RMKFMVLPLLR 115 (119)
Q Consensus 49 ~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G--~mKl~V~p~~~ 115 (119)
.+|-.+.|.-.+. |- .|+-.. |....=..+-+ ++|.++..|.. .|-.| .|++.|...++
T Consensus 121 p~g~~v~~~ltS~-DV--iHsf~v-p~l~~k~d~~PG~~~~~~~~~~~~G~y~g~C~e----~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 121 VYGVPYHLLVTSS-DV--IHSFSV-PDLNLKMDAIPGRINHLFFCPDRHGVFVGYCSE----LCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred eCCCEEEeeeecC-cc--ccceec-cccCceeecCCCceEEEEEEcCCCEEEEEEeeh----hhCcCcccCcEEEEEEcC
Confidence 4477777777764 32 354332 22221111222 89999999995 59888 89999887765
No 28
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=33.27 E-value=31 Score=22.50 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=10.7
Q ss_pred CCCeEeCcEEEEEeCCC
Q 041261 45 NAPFYVNDVLVFKYDPP 61 (119)
Q Consensus 45 ~k~F~vGD~LvF~Y~~~ 61 (119)
...+++||.++|.+...
T Consensus 71 ~n~L~~GD~~~F~~~~~ 87 (100)
T PF02362_consen 71 DNGLKEGDVCVFELIGN 87 (100)
T ss_dssp HCT--TT-EEEEEE-SS
T ss_pred HcCCCCCCEEEEEEecC
Confidence 36899999999999853
No 29
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=32.83 E-value=84 Score=23.36 Aligned_cols=46 Identities=2% Similarity=-0.126 Sum_probs=27.4
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecCcccCc------------ccCCCCcceEEEccC
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYL------------RCDIGWQPYYFACDE 95 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~------------~C~~~~G~~YFiCg~ 95 (119)
-++++||.+.+.+... +.+ .|.+..- .. +.+ -=-.+||.|.|.|+.
T Consensus 63 I~VkaGD~Vtl~vtN~-d~~-~H~f~i~-~~-gis~~I~pGet~TitF~adKpG~Y~y~C~~ 120 (135)
T TIGR03096 63 LVVKKGTPVKVTVENK-SPI-SEGFSID-AY-GISEVIKAGETKTISFKADKAGAFTIWCQL 120 (135)
T ss_pred EEECCCCEEEEEEEeC-CCC-ccceEEC-CC-CcceEECCCCeEEEEEECCCCEEEEEeCCC
Confidence 4678899998877643 333 5654432 11 100 000099999999996
No 30
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=31.96 E-value=31 Score=25.87 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=22.6
Q ss_pred cEEEecCCCCCCCCCCchhhhcCCCCeEeCcEEEEE
Q 041261 22 NKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFK 57 (119)
Q Consensus 22 ~~~~VGg~~gW~~~~nY~~WA~~~k~F~vGD~LvF~ 57 (119)
...+|||..| ..+.+-|-..+..|++||.|.|.
T Consensus 39 ~~~kVaD~Tg---sI~isvW~e~~~~~~PGDIirLt 71 (134)
T KOG3416|consen 39 RSCKVADETG---SINISVWDEEGCLIQPGDIIRLT 71 (134)
T ss_pred EEEEEecccc---eEEEEEecCcCcccCCccEEEec
Confidence 3467888765 12344554456899999999875
No 31
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.71 E-value=41 Score=26.44 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=22.8
Q ss_pred CCcceEEEccCCCCCCCCCC--cceEEEEecCC
Q 041261 85 GWQPYYFACDERGGLHWRDG--RMKFMVLPLLR 115 (119)
Q Consensus 85 ~~G~~YFiCg~~~g~HC~~G--~mKl~V~p~~~ 115 (119)
+||.++..|.. .|-.| .|++.|.+.++
T Consensus 188 ~~g~y~~~C~e----~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 188 RPGVFYGQCSE----ICGANHSFMPIVVEAVPL 216 (228)
T ss_pred CCEEEEEECcc----ccCcCcCCCeEEEEEECH
Confidence 99999999996 59888 89998887653
No 32
>PF07791 DUF1629: Protein of unknown function (DUF1629); InterPro: IPR012433 This family consists of sequences from hypothetical proteins thought to be expressed by two members of the Xanthomonas genus. The region in question is 125 amino acid residues long.
Probab=31.41 E-value=17 Score=26.92 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=19.4
Q ss_pred cceEEecCcc--cCcccCC-----CCcceEEEccCC
Q 041261 68 HSEYLLPNLW--SYLRCDI-----GWQPYYFACDER 96 (119)
Q Consensus 68 h~V~~V~~~~--~Y~~C~~-----~~G~~YFiCg~~ 96 (119)
++|++-.+-+ +|..|+. .+|+.||+|.+-
T Consensus 81 K~v~e~vDp~aFaF~~~d~~l~DGs~gp~yyLcdVv 116 (124)
T PF07791_consen 81 KQVMEAVDPEAFAFAECDVRLADGSKGPRYYLCDVV 116 (124)
T ss_pred HHHHHhhCcCceEEEEEEEEccCCCCCCcEEEeeee
Confidence 3444433444 4567876 899999999873
No 33
>PF15436 PGBA_N: Plasminogen-binding protein pgbA N-terminal
Probab=31.04 E-value=30 Score=27.77 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=44.7
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC------------------------------------CCcce
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI------------------------------------GWQPY 89 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~------------------------------------~~G~~ 89 (119)
-.-++||.++|+|--+ -.++..||++.|+.=.. ..|.-
T Consensus 78 ~~pk~GD~vil~~~Y~------rallIAPn~e~Y~~i~~~~~~i~fihpDl~aa~L~~~g~~P~~~dfrkfc~~~svGli 151 (218)
T PF15436_consen 78 MVPKKGDEVILNYLYN------RALLIAPNQETYEKIKSSYPNINFIHPDLFAAFLSENGHDPTREDFRKFCNQYSVGLI 151 (218)
T ss_pred cccCCCCEEEEeeccc------ceEEEcCCHHHHHHHHHhCCCceEecHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCEE
Confidence 3557899999999865 46778888887754322 77887
Q ss_pred EEEccCCC-CCCCCCCcceEEEEecCCC
Q 041261 90 YFACDERG-GLHWRDGRMKFMVLPLLRR 116 (119)
Q Consensus 90 YFiCg~~~-g~HC~~G~mKl~V~p~~~~ 116 (119)
|++-.... .-.|+.. ..|...+++.+
T Consensus 152 ~iv~~n~~~~lDcqSF-~iL~~~~~~~~ 178 (218)
T PF15436_consen 152 FIVLKNKLYILDCQSF-AILEKKPFDTS 178 (218)
T ss_pred EEEEcCcEEEEecCce-eEEEEEecccC
Confidence 87776541 2368887 77777766543
No 34
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=30.23 E-value=12 Score=23.82 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=14.8
Q ss_pred CCCCCCCC--chhhhcCCCCeEeCcEEEEE
Q 041261 30 DNWHFGFN--YSVWAFQNAPFYVNDVLVFK 57 (119)
Q Consensus 30 ~gW~~~~n--Y~~WA~~~k~F~vGD~LvF~ 57 (119)
.+|.+-+| +.+-......++.||.|+|.
T Consensus 39 ~~W~~~vNG~~~~~ga~~~~l~~GD~i~~~ 68 (68)
T PF14478_consen 39 SYWMYYVNGESANVGAGSYKLKDGDKITWY 68 (68)
T ss_dssp EEEEEEETTEE-SS-CCC-B--TTEEEEE-
T ss_pred ceeEEEECCEEhhcCcceeEeCCCCEEEeC
Confidence 46776444 44444446788999999984
No 35
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=30.14 E-value=35 Score=21.30 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=13.7
Q ss_pred CCCeEeCcEEEEEeCCC
Q 041261 45 NAPFYVNDVLVFKYDPP 61 (119)
Q Consensus 45 ~k~F~vGD~LvF~Y~~~ 61 (119)
++.|..||.|.|.+...
T Consensus 16 ~~pv~~Gd~i~~~~~~~ 32 (64)
T PF02933_consen 16 GRPVTKGDTIVFPFFGQ 32 (64)
T ss_dssp TEEEETT-EEEEEETTE
T ss_pred CCCccCCCEEEEEeCCc
Confidence 57999999999999743
No 36
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=28.60 E-value=33 Score=25.36 Aligned_cols=19 Identities=32% Similarity=0.558 Sum_probs=14.9
Q ss_pred CCcc-eEEEccCCCCCCCCCCcce
Q 041261 85 GWQP-YYFACDERGGLHWRDGRMK 107 (119)
Q Consensus 85 ~~G~-~YFiCg~~~g~HC~~G~mK 107 (119)
.+|. |=|||+.| +|-. . ||
T Consensus 101 ~~g~~Y~f~CSFP--GH~~-~-Mk 120 (125)
T TIGR02695 101 SAGEDYTFFCSFP--GHWA-M-MR 120 (125)
T ss_pred CCCCcceEEEcCC--CcHH-h-ce
Confidence 4676 66999999 9986 4 66
No 37
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=27.30 E-value=43 Score=22.73 Aligned_cols=44 Identities=18% Similarity=0.344 Sum_probs=30.0
Q ss_pred CCCCCCCcEEEecCCC---CCCCC-------CCchhhhcCCCCeEeCcEEEEEeC
Q 041261 15 TSDDDGPNKIIVGSSD---NWHFG-------FNYSVWAFQNAPFYVNDVLVFKYD 59 (119)
Q Consensus 15 ~~~~~~a~~~~VGg~~---gW~~~-------~nY~~WA~~~k~F~vGD~LvF~Y~ 59 (119)
..+.....-|++|+.. .|... .+|..|.. .-.+..|..|.|||-
T Consensus 10 ~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~-~v~lp~~~~veyKyv 63 (97)
T cd05810 10 GTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSG-SISLPASTNVEWKCL 63 (97)
T ss_pred cccCCCCeEEEEEChHHhCCCChhhcccccCCCCCeEEE-EEEcCCCCeEEEEEE
Confidence 3444555668999854 48852 24677876 467788888999884
No 38
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=26.99 E-value=47 Score=21.71 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=14.3
Q ss_pred CeEeCcEEEEEeCCCCC
Q 041261 47 PFYVNDVLVFKYDPPND 63 (119)
Q Consensus 47 ~F~vGD~LvF~Y~~~~~ 63 (119)
.|++||.|.|.+..+.+
T Consensus 2 ~~~~Ge~v~~~~~~~~~ 18 (83)
T PF14326_consen 2 VYRVGERVRFRVTSNRD 18 (83)
T ss_pred cccCCCEEEEEEEeCCC
Confidence 68999999999987643
No 39
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.35 E-value=59 Score=25.58 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=22.6
Q ss_pred CCcceEEEccCCCCCCCCCC--cceEEEEecCC
Q 041261 85 GWQPYYFACDERGGLHWRDG--RMKFMVLPLLR 115 (119)
Q Consensus 85 ~~G~~YFiCg~~~g~HC~~G--~mKl~V~p~~~ 115 (119)
++|.+|..|.. -|-.| .|++.|.+.++
T Consensus 188 ~~G~~~g~CsE----~CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 188 RPGSFYGQCSE----ICGANHSFMPIVVEFVPW 216 (225)
T ss_pred CCEEEEEEccc----ccCcCcCCCeEEEEEeCH
Confidence 89999999996 48888 89999887653
No 40
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.24 E-value=59 Score=25.70 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=22.0
Q ss_pred CCcceEEEccCCCCCCCCCC--cceEEEEecC
Q 041261 85 GWQPYYFACDERGGLHWRDG--RMKFMVLPLL 114 (119)
Q Consensus 85 ~~G~~YFiCg~~~g~HC~~G--~mKl~V~p~~ 114 (119)
++|.+|..|+. -|-.| .|++.|...+
T Consensus 188 ~~G~y~g~Cse----~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 188 RPGLFFGQCSE----ICGANHSFMPIVIESVS 215 (227)
T ss_pred CceEEEEEeec----hhCcCccCCeEEEEEeC
Confidence 99999999996 48887 8999888664
No 41
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=25.22 E-value=76 Score=24.38 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=21.5
Q ss_pred CCcceEEEccCCCCCCCCCC--cceEEEEecC
Q 041261 85 GWQPYYFACDERGGLHWRDG--RMKFMVLPLL 114 (119)
Q Consensus 85 ~~G~~YFiCg~~~g~HC~~G--~mKl~V~p~~ 114 (119)
++|.+|..|.. .|-.| .|.+.|.+.+
T Consensus 121 ~~G~y~gqCsE----lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 121 REGVFYGQCSE----MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred CCeEEEEEcch----hcCcCccCceEEEEEeC
Confidence 89999999996 48877 7988887654
No 42
>PF00084 Sushi: Sushi domain (SCR repeat); InterPro: IPR000436 Sushi domains are also known as Complement control protein (CCP) modules, or short consensus repeats (SCR), exist in a wide variety of complement and adhesion proteins. The structure is known for this domain, it is based on a beta-sandwich arrangement; one face made up of three beta-strands hydrogen-bonded to form a triple-stranded region at its centre and the other face formed from two separate beta-strands []. CD21 (also called C3d receptor, CR2, Epstein Barr virus receptor or EBV-R) is the receptor for EBV and for C3d, C3dg and iC3b. Complement components may activate B cells through CD21. CD21 is part of a large signal-transduction complex that also involves CD19, CD81, and Leu13. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Complement decay-accelerating factor (Antigen CD55) belongs to the Cromer blood group system and is associated with Cr(a), Dr(a), Es(a), Tc(a/b/c), Wd(a), WES(a/b), IFC and UMC antigens. Complement receptor type 1 (C3b/C4b receptor) (Antigen CD35) belongs to the Knops blood group system and is associated with Kn(a/b), McC(a), Sl(a) and Yk(a) antigens. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 1HFH_A 1HFI_A 1E5G_A 2UWN_A 2V8E_A 2XWB_H 3HS0_I 2OK5_A 2XWJ_J 3HRZ_D ....
Probab=24.95 E-value=74 Score=18.08 Aligned_cols=16 Identities=19% Similarity=0.561 Sum_probs=14.8
Q ss_pred CCeEeCcEEEEEeCCC
Q 041261 46 APFYVNDVLVFKYDPP 61 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~ 61 (119)
..|..||++.|.-+.+
T Consensus 17 ~~~~~g~~~~~~C~~G 32 (56)
T PF00084_consen 17 NPYSYGSTVTFSCNPG 32 (56)
T ss_dssp SSEETTEEEEEEESTT
T ss_pred CCccCCCEEEEcCCCC
Confidence 5899999999999987
No 43
>smart00026 EPEND Ependymins. Ependymins are the predominant proteins in the cerebrospinal fluid (CSF) of teleost fish. They have been implicated in the neurochemistry of memory and neuronal regeneration. They are glycoproteins of about 200 amino acids that can bind calcium. Four cysteines are conserved that probably form disulfide bonds.
Probab=24.72 E-value=1.8e+02 Score=22.82 Aligned_cols=49 Identities=14% Similarity=0.050 Sum_probs=32.5
Q ss_pred EEEeCCCCCCccccceEEecCcccCcccCC--------CCcceEEEccCCCCCCCCCCcceEEEEecCCCCC
Q 041261 55 VFKYDPPNDTVFPHSEYLLPNLWSYLRCDI--------GWQPYYFACDERGGLHWRDGRMKFMVLPLLRRWH 118 (119)
Q Consensus 55 vF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~--------~~G~~YFiCg~~~g~HC~~G~mKl~V~p~~~~~~ 118 (119)
.|.|++-+ --|..+ .+..+.++.. +.|+.|=|-... ..|.. .+|..|||
T Consensus 27 ~~sYD~~n-----kr~R~~-E~~~~~n~t~~~d~L~lf~eGv~Y~id~kn--~sC~K-------~~L~~~~h 83 (191)
T smart00026 27 EFSYDSKA-----KKLRFV-EDTMHANKTSHLDVLIHFEEGVFYDIDSKN--QSCKK-------ETLQSRKH 83 (191)
T ss_pred EEEeccCC-----CEEEEE-ecccccCCceeeEEEEEecCCcEEEEecCC--Cceee-------eecCCCcc
Confidence 47888763 334444 5556666653 889999998887 78965 35556665
No 44
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.60 E-value=57 Score=25.81 Aligned_cols=26 Identities=19% Similarity=0.177 Sum_probs=21.5
Q ss_pred CCcceEEEccCCCCCCCCCC--cceEEEEecC
Q 041261 85 GWQPYYFACDERGGLHWRDG--RMKFMVLPLL 114 (119)
Q Consensus 85 ~~G~~YFiCg~~~g~HC~~G--~mKl~V~p~~ 114 (119)
++|.+|..|+. -|-.| .|++.|...+
T Consensus 188 ~~G~~~g~C~e----~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 188 RPGVFYGQCSE----ICGANHSFMPIVVEAVP 215 (230)
T ss_pred CceEEEEEChh----hccccccCCcEEEEEEC
Confidence 89999999996 48777 7988887664
No 45
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=23.53 E-value=88 Score=20.97 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=10.2
Q ss_pred CCeEeCcEEEEEeCCC
Q 041261 46 APFYVNDVLVFKYDPP 61 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~ 61 (119)
.++++||+|.|..+..
T Consensus 41 ~~L~pGq~l~f~~d~~ 56 (85)
T PF04225_consen 41 TRLKPGQTLEFQLDED 56 (85)
T ss_dssp GG--TT-EEEEEE-TT
T ss_pred hhCCCCCEEEEEECCC
Confidence 3789999999999865
No 46
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=22.44 E-value=71 Score=20.46 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=13.6
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEe
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLL 73 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V 73 (119)
-+|++||.+.+.=..+. .|.+.+.
T Consensus 4 Gpf~~GdrVQlTD~Kgr----~~Ti~L~ 27 (54)
T PF14801_consen 4 GPFRAGDRVQLTDPKGR----KHTITLE 27 (54)
T ss_dssp -S--TT-EEEEEETT------EEEEE--
T ss_pred CCCCCCCEEEEccCCCC----eeeEEEC
Confidence 48999999999988884 5666665
No 47
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.35 E-value=83 Score=24.80 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=21.9
Q ss_pred CCcceEEEccCCCCCCCCCC--cceEEEEecC
Q 041261 85 GWQPYYFACDERGGLHWRDG--RMKFMVLPLL 114 (119)
Q Consensus 85 ~~G~~YFiCg~~~g~HC~~G--~mKl~V~p~~ 114 (119)
++|.+|-.|+. -|-.| .|.+.|...+
T Consensus 188 ~~G~y~g~CsE----~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 188 RPGVFYGQCSE----ICGANHSFMPIVVESVP 215 (227)
T ss_pred ccceEEEEecc----ccccCccCCeEEEEEcC
Confidence 99999999996 48877 7998888765
No 48
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=22.32 E-value=81 Score=20.84 Aligned_cols=40 Identities=30% Similarity=0.551 Sum_probs=29.1
Q ss_pred CCcEEEecCCC---CCCCC-----------CCchhhhcCCCCeEeCcEEEEEeCC
Q 041261 20 GPNKIIVGSSD---NWHFG-----------FNYSVWAFQNAPFYVNDVLVFKYDP 60 (119)
Q Consensus 20 ~a~~~~VGg~~---gW~~~-----------~nY~~WA~~~k~F~vGD~LvF~Y~~ 60 (119)
.-.-++||+.. .|+.. .++..|.. .-.+..|..+.|||--
T Consensus 15 ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~-~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 15 GESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSA-TVDLPAGTPFEYKYVI 68 (96)
T ss_dssp TEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEE-EEEEETTSEEEEEEEE
T ss_pred CCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEE-EEECcCCCEEEEEEEE
Confidence 34568999865 49862 14689987 4677889999999864
No 49
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=21.93 E-value=1.8e+02 Score=25.56 Aligned_cols=65 Identities=18% Similarity=0.136 Sum_probs=41.2
Q ss_pred CCCCCC--Cchh-hhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC--------------CCcceEEEc
Q 041261 31 NWHFGF--NYSV-WAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI--------------GWQPYYFAC 93 (119)
Q Consensus 31 gW~~~~--nY~~-WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~--------------~~G~~YFiC 93 (119)
-|.+|. +.+. ||. ...+||.|...+... .-.|+.| ++-|.- |. .||.-...
T Consensus 75 ~w~iPItl~v~e~~a~---~~~~Gd~i~L~~~g~-----piavl~v--eevy~~-dk~~eA~~v~~t~D~~HPgv~~l~- 142 (397)
T COG2046 75 LWPIPITLDVSEEEAE---ELSVGDRILLTYKGD-----PIAVLTV--EEVYKP-DKKLEAKNVFKTSDIKHPGVKKLY- 142 (397)
T ss_pred eeeeeeEecCchHhhh---ccCCCCEEEEccCCc-----eEEEEEe--eeeccc-CHHHHHHHhcCCCCCCCCceeeee-
Confidence 366664 3444 775 455799999999644 5677776 443433 32 88886655
Q ss_pred cCCCCCCCCCCcceEEEE
Q 041261 94 DERGGLHWRDGRMKFMVL 111 (119)
Q Consensus 94 g~~~g~HC~~G~mKl~V~ 111 (119)
..+ ..|.+| ||.+.
T Consensus 143 ~~g--~~~laG--~i~l~ 156 (397)
T COG2046 143 DMG--DYYLAG--KIELI 156 (397)
T ss_pred ccC--CeEeee--eEEEE
Confidence 455 689999 44443
No 50
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=21.93 E-value=81 Score=24.94 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=21.7
Q ss_pred CCcceEEEccCCCCCCCCCC--cceEEEEecC
Q 041261 85 GWQPYYFACDERGGLHWRDG--RMKFMVLPLL 114 (119)
Q Consensus 85 ~~G~~YFiCg~~~g~HC~~G--~mKl~V~p~~ 114 (119)
+||.+|..|+. -|-.| .|.+.|...+
T Consensus 188 ~~G~~~g~Cse----~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 188 RPGLYYGQCSE----ICGSNHSFMPIVLELVP 215 (227)
T ss_pred CcEEEEEECcc----ccCcCcCCceEEEEEeC
Confidence 99999999996 48777 7988888664
No 51
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=21.38 E-value=54 Score=18.58 Aligned_cols=18 Identities=17% Similarity=0.499 Sum_probs=12.1
Q ss_pred chhhhcCCCCeEeCcEEEE
Q 041261 38 YSVWAFQNAPFYVNDVLVF 56 (119)
Q Consensus 38 Y~~WA~~~k~F~vGD~LvF 56 (119)
|..|+. ++....||.+.+
T Consensus 1 ~~~W~~-~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQA-GTVYTAGDVVSY 18 (41)
T ss_pred CCccCC-CCcCcCCCEEEE
Confidence 457876 566667887755
No 52
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.35 E-value=79 Score=24.77 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=22.1
Q ss_pred CCcceEEEccCCCCCCCCCC--cceEEEEecC
Q 041261 85 GWQPYYFACDERGGLHWRDG--RMKFMVLPLL 114 (119)
Q Consensus 85 ~~G~~YFiCg~~~g~HC~~G--~mKl~V~p~~ 114 (119)
++|.+|..|+. -|-.| .|.+.|...+
T Consensus 188 ~~G~y~g~CsE----~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 188 RPGVFYGQCSE----ICGANHSFMPIVVEAIS 215 (226)
T ss_pred CCEEEEEEChh----hcCcCcCCCeEEEEEeC
Confidence 99999999996 49888 8999888765
No 53
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=21.26 E-value=77 Score=21.59 Aligned_cols=43 Identities=23% Similarity=0.368 Sum_probs=29.3
Q ss_pred CCCCCcEEEecCCC---CCCCC----------CCchhhhcCCCCeEeCcEEEEEeCC
Q 041261 17 DDDGPNKIIVGSSD---NWHFG----------FNYSVWAFQNAPFYVNDVLVFKYDP 60 (119)
Q Consensus 17 ~~~~a~~~~VGg~~---gW~~~----------~nY~~WA~~~k~F~vGD~LvF~Y~~ 60 (119)
+......|+||+.. .|+.. .+|..|.. .-.+..|..+.|||-.
T Consensus 15 t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~-~~~lp~~~~veyK~v~ 70 (103)
T cd05820 15 TAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFV-VASVPAGTYIEFKFLK 70 (103)
T ss_pred cCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEE-EEEcCCCCcEEEEEEE
Confidence 34444668899753 49862 24678876 4677788889998854
No 54
>smart00032 CCP Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR). The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.
Probab=20.90 E-value=1.1e+02 Score=17.03 Aligned_cols=16 Identities=19% Similarity=0.563 Sum_probs=14.0
Q ss_pred CCeEeCcEEEEEeCCC
Q 041261 46 APFYVNDVLVFKYDPP 61 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~ 61 (119)
..|..|++|.|.-+.+
T Consensus 18 ~~~~~g~~~~~~C~~G 33 (57)
T smart00032 18 GTYSVGDTVTYSCNPG 33 (57)
T ss_pred CeecCCCEEEEEcCCC
Confidence 4799999999999887
Done!