Query 041261
Match_columns 119
No_of_seqs 111 out of 772
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:40:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ws8_A Mavicyanin; oxidized fo 100.0 2.2E-35 7.4E-40 209.1 6.7 88 20-117 1-107 (109)
2 1jer_A Cucumber stellacyanin; 100.0 6.4E-34 2.2E-38 209.2 5.4 87 20-115 2-109 (138)
3 2cbp_A Cucumber basic protein; 100.0 6E-33 2E-37 192.4 5.8 80 22-113 1-96 (96)
4 1x9u_A Umecyanin; cupredoxin, 100.0 1.5E-32 5.1E-37 196.5 6.3 84 22-115 2-106 (116)
5 1f56_A Plantacyanin; cupredoxi 100.0 6.4E-29 2.2E-33 170.8 6.7 75 22-113 1-91 (91)
6 1qhq_A Protein (auracyanin); e 98.7 3.9E-08 1.3E-12 69.4 8.1 87 17-113 12-139 (140)
7 2cal_A Rusticyanin; iron respi 98.6 5.7E-08 2E-12 71.0 5.7 63 46-112 63-153 (154)
8 1bxv_A Plastocyanin; copper pr 98.4 3.1E-07 1.1E-11 59.5 5.1 73 23-112 4-90 (91)
9 2aan_A Auracyanin A; cupredoxi 98.1 1.1E-05 3.7E-10 56.8 8.4 82 18-112 15-138 (139)
10 1kdj_A Plastocyanin; electron 97.7 6.3E-05 2.1E-09 49.7 6.0 73 23-112 2-101 (102)
11 1pmy_A Pseudoazurin; electron 97.7 7.5E-05 2.6E-09 52.6 6.5 61 46-116 23-96 (123)
12 1paz_A Pseudoazurin precursor; 97.7 8.1E-05 2.8E-09 52.4 6.1 61 46-116 23-96 (123)
13 2gim_A Plastocyanin; beta shee 97.7 0.00011 3.6E-09 48.8 6.4 73 23-112 5-104 (106)
14 1b3i_A PETE protein, protein ( 97.6 0.00017 6E-09 47.1 6.5 57 46-112 21-96 (97)
15 1iuz_A Plastocyanin; electron 97.6 8.9E-05 3E-09 49.0 4.8 74 23-112 3-97 (98)
16 3tu6_A Pseudoazurin (blue copp 97.5 0.00016 5.4E-09 51.4 5.7 60 46-116 25-98 (127)
17 1iko_P Ephrin-B2; greek KEY, g 97.5 4.9E-05 1.7E-09 57.7 2.8 67 49-116 27-142 (178)
18 1plc_A Plastocyanin; electron 97.4 0.00034 1.2E-08 46.0 5.8 73 23-112 2-98 (99)
19 2plt_A Plastocyanin; electron 97.4 0.00017 5.7E-09 47.2 4.2 74 22-112 2-97 (98)
20 3erx_A Pseudoazurin; copper pr 97.3 0.00044 1.5E-08 48.8 5.9 60 46-116 23-96 (123)
21 1pcs_A Plastocyanin; electron 97.3 0.00034 1.2E-08 45.7 4.7 73 23-112 4-97 (98)
22 1byp_A Protein (plastocyanin); 97.3 0.00043 1.5E-08 45.3 4.9 73 23-112 2-98 (99)
23 1shx_A Ephrin-A5; ephrin signa 97.2 0.00051 1.7E-08 50.2 5.0 36 48-84 25-65 (138)
24 3ef4_A Pseudoazurin, blue copp 97.2 0.00066 2.3E-08 48.2 5.4 58 46-114 24-95 (124)
25 2wo3_B Ephrin-A2; transferase- 97.0 0.00084 2.9E-08 50.0 5.3 65 48-115 34-146 (157)
26 2x11_B Ephrin-A5; receptor-sig 97.0 0.0013 4.4E-08 49.9 6.1 36 48-84 54-94 (177)
27 2vsm_B Ephrin-B2; developmenta 97.0 0.00042 1.4E-08 50.7 2.9 64 49-113 26-138 (140)
28 4hci_A Cupredoxin 1; structura 96.5 0.0023 7.9E-08 42.3 3.5 59 46-112 30-99 (100)
29 3d12_B Ephrin-B3; beta propell 96.3 0.0033 1.1E-07 46.0 4.0 65 47-112 23-139 (141)
30 3czu_B Ephrin-A1; ATP-binding, 96.2 0.0049 1.7E-07 46.9 4.5 36 48-84 52-93 (182)
31 3cvb_A Plastocyanin; cupredoxi 96.0 0.0084 2.9E-07 39.1 4.4 73 23-112 4-103 (105)
32 2ov0_A Amicyanin; beta-sandwic 95.6 0.029 1E-06 37.3 5.7 72 21-112 18-104 (105)
33 3ay2_A Lipid modified azurin p 95.4 0.035 1.2E-06 41.1 6.0 24 85-112 142-165 (167)
34 3hei_B Ephrin-A1; EPH receptor 94.9 0.033 1.1E-06 40.3 4.6 36 48-84 24-65 (132)
35 1id2_A Amicyanin; beta barrel, 94.9 0.06 2.1E-06 35.9 5.7 55 46-112 36-105 (106)
36 1cuo_A Protein (azurin ISO-2); 94.4 0.18 6E-06 35.5 7.3 24 85-112 104-127 (129)
37 3c75_A Amicyanin; copper prote 93.8 0.14 4.7E-06 35.7 5.7 55 46-112 62-131 (132)
38 1nwp_A Azurin; electron transp 93.7 0.17 5.7E-06 35.6 6.1 23 86-112 104-127 (128)
39 2ccw_A Azurin II, AZN-2; elect 92.5 0.59 2E-05 32.7 7.4 23 86-112 104-127 (129)
40 2ux6_A Pseudoazurin; type-1 co 92.1 0.25 8.5E-06 34.2 5.0 59 46-116 23-94 (122)
41 2iaa_C Azurin; quinoprotein, t 91.0 1.1 3.6E-05 31.4 7.3 24 85-112 102-126 (128)
42 1iby_A Nitrosocyanin; RED copp 90.3 0.35 1.2E-05 31.9 4.2 58 46-112 40-110 (112)
43 2cua_A Protein (CUA); CUA cent 89.2 0.72 2.5E-05 32.5 5.3 58 46-113 62-134 (135)
44 2dv6_A Nitrite reductase; elec 81.6 1.5 5E-05 35.4 4.2 60 46-111 57-129 (447)
45 3s8f_B Cytochrome C oxidase su 75.3 6.2 0.00021 28.9 5.7 59 46-112 95-166 (168)
46 1yel_A AT1G16640; CESG, protei 72.8 1.2 4.1E-05 29.5 1.1 25 45-73 75-99 (104)
47 3l6w_A Hemocyanin 1; cupredoxi 71.8 1.7 5.9E-05 37.3 2.1 61 47-112 414-490 (491)
48 3sbq_A Nitrous-oxide reductase 64.0 10 0.00034 33.7 5.3 63 46-113 560-636 (638)
49 3iuw_A Activating signal coint 60.4 3.6 0.00012 27.3 1.5 17 45-61 35-52 (83)
50 1fwx_A Nitrous oxide reductase 58.2 17 0.00059 31.6 5.8 63 46-114 515-592 (595)
51 4i1k_A B3 domain-containing tr 49.8 7.3 0.00025 27.7 1.7 21 40-61 110-130 (146)
52 1xne_A Hypothetical protein PF 38.4 11 0.00037 26.1 1.1 12 46-57 33-44 (113)
53 1cyx_A CYOA; electron transpor 35.3 29 0.00098 26.4 3.1 59 47-113 44-115 (205)
54 2z0t_A Putative uncharacterize 33.3 12 0.00041 25.7 0.7 11 46-56 32-42 (109)
55 2kbn_A Conserved protein; nucl 30.9 31 0.0011 22.9 2.4 34 21-57 36-70 (109)
56 3hb3_B Cytochrome C oxidase su 30.7 26 0.00088 27.9 2.3 60 47-114 192-264 (298)
57 4dny_A Metalloprotease STCE; m 30.7 13 0.00045 26.5 0.5 39 20-61 77-115 (126)
58 1v54_B Cytochrome C oxidase po 29.3 34 0.0011 26.0 2.6 26 85-114 188-215 (227)
59 2gsm_B Cytochrome C oxidase su 28.5 35 0.0012 26.4 2.6 60 47-114 174-246 (262)
60 2k75_A Uncharacterized protein 27.0 19 0.00066 23.8 0.8 29 23-57 41-69 (106)
61 4he6_A Peptidase family U32; u 23.3 28 0.00097 22.1 1.1 16 46-61 28-43 (89)
62 2qcp_X Cation efflux system pr 21.9 40 0.0014 21.4 1.6 16 46-61 52-67 (80)
63 2vb2_X Copper protein, cation 20.9 43 0.0015 21.7 1.6 22 39-61 54-75 (88)
64 1fft_B Ubiquinol oxidase; elec 20.1 46 0.0016 26.6 1.9 60 46-113 153-225 (315)
No 1
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=2.2e-35 Score=209.08 Aligned_cols=88 Identities=24% Similarity=0.381 Sum_probs=80.9
Q ss_pred CCcEEEecCCCCCCCC--CCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-------------
Q 041261 20 GPNKIIVGSSDNWHFG--FNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI------------- 84 (119)
Q Consensus 20 ~a~~~~VGg~~gW~~~--~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~------------- 84 (119)
+|++|+|||+.||+++ .+|++||+ +++|+|||+|+|+|.++ .|+|+|| ++++|+.|+.
T Consensus 1 ~a~~~~VG~~~GW~~~~~~~Y~~Wa~-~~~F~vGD~LvF~y~~~-----~hsV~~V-~~~~y~~C~~~~p~~~~~~G~~~ 73 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLVPYDYAKWAS-SNKFHVGDSLLFNYNNK-----FHNVLQV-DQEQFKSCNSSSPAASYTSGADS 73 (109)
T ss_dssp CCCEEETTGGGCSCSSSCCCHHHHHH-TSCBCTTCEEEEECCTT-----TCCEEEE-CHHHHHHTCCSSCSEEECSSEEE
T ss_pred CCcEEEeCCCCCccCCCCcChhHhhc-CCcCcCCCEEEEeecCC-----CceEEEE-ChHHCCcccCCCcccccCCCCEE
Confidence 4789999999999998 89999999 69999999999999988 7999999 9999999996
Q ss_pred ----CCcceEEEccCCCCCCCCCCcceEEEEecCCCC
Q 041261 85 ----GWQPYYFACDERGGLHWRDGRMKFMVLPLLRRW 117 (119)
Q Consensus 85 ----~~G~~YFiCg~~~g~HC~~G~mKl~V~p~~~~~ 117 (119)
++|++||||+++ +||+.| |||+|.+++.+.
T Consensus 74 v~L~~~G~~yFic~~~--gHC~~G-mKl~I~V~~~~s 107 (109)
T 1ws8_A 74 IPLKRPGTFYFLCGIP--GHCQLG-QKVEIKVDPGSS 107 (109)
T ss_dssp EECCSSEEEEEECCST--TTTTTT-CEEEEEECC---
T ss_pred EEECCCcCEEEECCCC--CcccCC-CEEEEEEcCCCC
Confidence 899999999999 999999 999999987653
No 2
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=6.4e-34 Score=209.21 Aligned_cols=87 Identities=25% Similarity=0.435 Sum_probs=81.3
Q ss_pred CCcEEEecCCCCCCCC---CCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC------------
Q 041261 20 GPNKIIVGSSDNWHFG---FNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI------------ 84 (119)
Q Consensus 20 ~a~~~~VGg~~gW~~~---~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~------------ 84 (119)
+|++|+|||+.||+++ .+|++||+ +++|+|||+|+|+|.++ .|+|+||+++++|+.|+.
T Consensus 2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~-~~~F~vGD~LvF~y~~~-----~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~ 75 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSSPNFYSQWAA-GKTFRVGDSLQFNFPAN-----AHNVHEMETKQSFDACNFVNSDNDVERTSP 75 (138)
T ss_dssp CCCEEETTGGGCSSCCSSTTHHHHHHH-TCCEETTCEEEECCCTT-----TCCCEEESCHHHHHHTCCTTSCCCCCCCSC
T ss_pred CceEEEECCcCcCcCCCCccchhhhhc-CCcCcCCCEEEEeecCC-----CceEEEeCchhhcCccCCCCccccccCCCe
Confidence 5789999999999998 78999999 69999999999999987 699999999999999996
Q ss_pred ------CCcceEEEccCCCCCCCCCCcceEEEEecCC
Q 041261 85 ------GWQPYYFACDERGGLHWRDGRMKFMVLPLLR 115 (119)
Q Consensus 85 ------~~G~~YFiCg~~~g~HC~~G~mKl~V~p~~~ 115 (119)
++|++||||+++ +||+.| |||+|++++.
T Consensus 76 ~v~L~~~~G~~YFicg~~--gHC~~G-mKl~I~V~~~ 109 (138)
T 1jer_A 76 VIERLDELGMHYFVCTVG--THCSNG-QKLSINVVAA 109 (138)
T ss_dssp EEEECCSSEEEEEECCST--TTGGGT-CEEEEEEECC
T ss_pred EEEeccCCcCEEEEcCCC--CccccC-CEEEEEEcCC
Confidence 679999999999 999999 9999998764
No 3
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=99.97 E-value=6e-33 Score=192.41 Aligned_cols=80 Identities=31% Similarity=0.612 Sum_probs=75.1
Q ss_pred cEEEecCCCCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC----------------C
Q 041261 22 NKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI----------------G 85 (119)
Q Consensus 22 ~~~~VGg~~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~----------------~ 85 (119)
++|+|||+.||++ +|++||+ +++|+|||+|+|+|.++ .|+|+|| ++++|+.|+. +
T Consensus 1 ~~~~VG~~~GW~~--~y~~Wa~-~~~f~vGD~L~F~y~~~-----~hsV~~v-~~~~y~~C~~~~~~~~~~~G~~~v~L~ 71 (96)
T 2cbp_A 1 AVYVVGGSGGWTF--NTESWPK-GKRFRAGDILLFNYNPS-----MHNVVVV-NQGGFSTCNTPAGAKVYTSGRDQIKLP 71 (96)
T ss_dssp CEEETTGGGCSCS--SCTTTTT-TCCBCTTCEEEEECCTT-----TCCEEEE-CHHHHHHTCCCTTCEEECSSEEEEECC
T ss_pred CEEEECCcCCCcc--Chhhhcc-CceEcCCCEEEEEecCC-----CCEEEEE-CHHHCCccCCCCCcccccCCCeEEEec
Confidence 4799999999997 6999998 69999999999999988 6999999 9999999997 6
Q ss_pred CcceEEEccCCCCCCCCCCcceEEEEec
Q 041261 86 WQPYYFACDERGGLHWRDGRMKFMVLPL 113 (119)
Q Consensus 86 ~G~~YFiCg~~~g~HC~~G~mKl~V~p~ 113 (119)
+|++||||+++ +||+.| |||+|.+|
T Consensus 72 ~g~~yFic~~~--~HC~~G-mkl~I~Vl 96 (96)
T 2cbp_A 72 KGQSYFICNFP--GHCQSG-MKIAVNAL 96 (96)
T ss_dssp SEEEEEECCST--TTGGGT-CEEEEEEC
T ss_pred CCCEEEEcCCC--CccccC-CEEEEEEC
Confidence 89999999999 999999 99999986
No 4
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=99.97 E-value=1.5e-32 Score=196.50 Aligned_cols=84 Identities=24% Similarity=0.373 Sum_probs=77.0
Q ss_pred cEEEecCCCCCCCC---CCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC--------------
Q 041261 22 NKIIVGSSDNWHFG---FNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-------------- 84 (119)
Q Consensus 22 ~~~~VGg~~gW~~~---~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-------------- 84 (119)
++|+|||+.||+++ .+|++||+ +++|+|||+|+|+|.++ .|+|+|| ++++|+.|+.
T Consensus 2 ~~~~VG~~~GW~~~~~~~~Y~~Wa~-~~~f~vGD~L~F~y~~~-----~HsV~~V-~~~~y~~C~~~~~~~~~~~G~~~v 74 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPSDPKFYITWAT-GKTFRVGDELEFDFAAG-----MHDVAVV-TKDAFDNCKKENPISHMTTPPVKI 74 (116)
T ss_dssp CEEETTGGGCSSCCSSTTHHHHHHT-TCCEETTCEEEECCCTT-----TCCEEEE-CHHHHHTTCCSSCSEEECSSSEEE
T ss_pred eEEEECCcCcCcCCCCCcchhhccc-cccCcCCCEEEEEecCC-----CCeEEEE-ChhhcCccCCCCCccccCCCCeEE
Confidence 57999999999985 67999999 69999999999999987 6999999 9999999997
Q ss_pred ---CCcceEEEccCCCCCCCCCCcceEEE-EecCC
Q 041261 85 ---GWQPYYFACDERGGLHWRDGRMKFMV-LPLLR 115 (119)
Q Consensus 85 ---~~G~~YFiCg~~~g~HC~~G~mKl~V-~p~~~ 115 (119)
++|++||||+++ +||+.| |||+| .+++.
T Consensus 75 ~l~~~G~~yFic~~~--~HC~~G-mkl~In~V~~~ 106 (116)
T 1x9u_A 75 MLNTTGPQYYICTVG--DHCRVG-QKLSINVVGAG 106 (116)
T ss_dssp ECCSCEEEEEECCST--TTTTTT-CEEEEEEECC-
T ss_pred EECCCCCEEEECCCC--CccccC-CEEEEEEECCC
Confidence 889999999999 999999 99999 76543
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=99.95 E-value=6.4e-29 Score=170.82 Aligned_cols=75 Identities=29% Similarity=0.416 Sum_probs=69.6
Q ss_pred cEEEecCCCCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC----------------C
Q 041261 22 NKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI----------------G 85 (119)
Q Consensus 22 ~~~~VGg~~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~----------------~ 85 (119)
++|+| ||+++ ++||+ +++|+|||+|+|+|.++ .|+|+|| ++++|+.|+. .
T Consensus 1 ~~y~V----gW~~~---~~Wa~-~~~f~vGD~L~F~y~~~-----~hsV~~v-~~~~y~~C~~~~~~~~~~~G~~~v~L~ 66 (91)
T 1f56_A 1 AVYNI----GWSFN---VNGAR-GKSFRAGDVLVFKYIKG-----QHNVVAV-NGRGYASCSAPRGARTYSSGQDRIKLT 66 (91)
T ss_dssp CEEEE----ECSSS---CBSCT-TCCBCTTCEEEEECCBT-----TBCEEEE-CHHHHHTTCCCTTCEEECSSEEEEECC
T ss_pred CEEEE----eCCCC---CcCcC-CccEeCCCEEEEEccCC-----CCeEEEE-CHHHcCCcCCCCCcccccCCCcEEEeC
Confidence 47999 89988 89998 69999999999999988 6999999 9999999997 6
Q ss_pred CcceEEEccCCCCCCCCCCcceEEEEec
Q 041261 86 WQPYYFACDERGGLHWRDGRMKFMVLPL 113 (119)
Q Consensus 86 ~G~~YFiCg~~~g~HC~~G~mKl~V~p~ 113 (119)
+|++||||+++ +||+.| |||+|.+.
T Consensus 67 ~g~~yFic~~~--~HC~~G-mkl~I~v~ 91 (91)
T 1f56_A 67 RGQNYFICSFP--GHCGGG-MKIAINAK 91 (91)
T ss_dssp SEEEEEECCST--TTTTTT-CEEEEEEC
T ss_pred CCCeEEEcCCC--CccccC-CEEEEEEC
Confidence 79999999999 999999 99999874
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=98.74 E-value=3.9e-08 Score=69.41 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=58.4
Q ss_pred CCCCCcEEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcc----------------cC
Q 041261 17 DDDGPNKIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW----------------SY 79 (119)
Q Consensus 17 ~~~~a~~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~----------------~Y 79 (119)
..+...++.|+-. .+|.+.++ .-++++||++.|.+....++...|++++..... +|
T Consensus 12 ~~~~~~~v~V~~~~~~~~F~P~-------~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (140)
T 1qhq_A 12 NETPAQTVEVRAAPDALAFAQT-------SLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALF 84 (140)
T ss_dssp CSCCSEEEEEEBCSSSSSBSCS-------EEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTT
T ss_pred ccCCCEEEEEEEeCCCceEeCC-------eEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccc
Confidence 3455677888754 35776653 358899999998886510112379998872110 11
Q ss_pred c------cc-------CC-----------CCcceEEEccCCCCCCCCCCcceEEEEec
Q 041261 80 L------RC-------DI-----------GWQPYYFACDERGGLHWRDGRMKFMVLPL 113 (119)
Q Consensus 80 ~------~C-------~~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V~p~ 113 (119)
. .. .. ++|.|+|+|+++ +||..| ||..|.+.
T Consensus 85 ~~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~--~H~~~G-M~g~i~V~ 139 (140)
T 1qhq_A 85 VPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFP--GHYLAG-MKGTLTVT 139 (140)
T ss_dssp CCCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCST--TTTTTT-CEEEEEEE
T ss_pred cCccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCc--CHhhcC-CEEEEEEc
Confidence 0 00 01 799999999999 899999 99988764
No 7
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=98.60 E-value=5.7e-08 Score=70.96 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=48.0
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC----------------------------CCcceEEEccCCC
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI----------------------------GWQPYYFACDERG 97 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~----------------------------~~G~~YFiCg~~~ 97 (119)
-++++||+|+|.+....+ ...|++.++.....|..|.. ++|.|||+|+.+
T Consensus 63 i~V~~GD~V~~~~tN~~~-~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~~pGtY~y~C~~~- 140 (154)
T 2cal_A 63 LEIPAGATVDVTFINTNK-GFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIP- 140 (154)
T ss_dssp EEECTTCEEEEEEEECCT-TCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECCCSEEEEEECCST-
T ss_pred EEEeCCCEEEEEEEcCCC-CeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEECCceEEEECCCC-
Confidence 366889999999976422 23799999854555544320 689999999999
Q ss_pred CCCCCCCcceEEEEe
Q 041261 98 GLHWRDGRMKFMVLP 112 (119)
Q Consensus 98 g~HC~~G~mKl~V~p 112 (119)
+||+.| |+..|.+
T Consensus 141 -gH~~~G-M~G~IiV 153 (154)
T 2cal_A 141 -GMAATG-MFGKIVV 153 (154)
T ss_dssp -TTGGGT-CEEEEEE
T ss_pred -CHHHCC-CEEEEEE
Confidence 999999 9988865
No 8
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=98.43 E-value=3.1e-07 Score=59.50 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=50.7
Q ss_pred EEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccC--cccCC-----------CCcc
Q 041261 23 KIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSY--LRCDI-----------GWQP 88 (119)
Q Consensus 23 ~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y--~~C~~-----------~~G~ 88 (119)
+..+|++ .++.+.++ ..++++||+|.|.+.... .|+|... ....+ +.-.. +||.
T Consensus 4 ~v~~~~~~~~~~f~P~-------~i~v~~Gd~V~~~n~~~~----~H~v~~~-~~~~~~~~~~~~~~g~~~~~~f~~~G~ 71 (91)
T 1bxv_A 4 AIKMGADNGMLAFEPS-------TIEIQAGDTVQWVNNKLA----PHNVVVE-GQPELSHKDLAFSPGETFEATFSEPGT 71 (91)
T ss_dssp EEEESCTTSCSSEESS-------EEEECTTCEEEEEECSSC----CEEEEET-TCGGGCEEEEECSTTCEEEEECCSCEE
T ss_pred EEEEecCCCccEEeCC-------EEEECCCCEEEEEECCCC----CcEEEEe-CCCccCcccceeCCCCEEEEEeCCCEE
Confidence 4556654 44665443 358899999999987532 6999876 43222 11111 8999
Q ss_pred eEEEccCCCCCCCCCCcceEEEEe
Q 041261 89 YYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 89 ~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
|+|+|. .||..| |+..|.+
T Consensus 72 y~~~C~----~H~~~g-M~g~i~V 90 (91)
T 1bxv_A 72 YTYYCE----PHRGAG-MVGKIVV 90 (91)
T ss_dssp EEEECT----TTGGGT-CEEEEEE
T ss_pred EEEEeC----CCccCC-CEEEEEE
Confidence 999999 499999 9998875
No 9
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.15 E-value=1.1e-05 Score=56.77 Aligned_cols=82 Identities=18% Similarity=0.311 Sum_probs=54.0
Q ss_pred CCCCcEEEecC-CCCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCcc-ccceEEecCc-----------------cc
Q 041261 18 DDGPNKIIVGS-SDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVF-PHSEYLLPNL-----------------WS 78 (119)
Q Consensus 18 ~~~a~~~~VGg-~~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~-~h~V~~V~~~-----------------~~ 78 (119)
.++..++.||. ..++.+.++ .-++++||++.|.+.... .. .|++...... .+
T Consensus 15 ~~~~~~V~v~~~~~~~~F~p~-------~i~v~~G~~V~~~~~N~~--~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~ 85 (139)
T 2aan_A 15 GSGPVTIEIGSKGEELAFDKT-------ELTVSAGQTVTIRFKNNS--AVQQHNWILVKGGEAEAANIANAGLSAGPAAN 85 (139)
T ss_dssp --CCEEEEEEBCTTSSSBSCS-------EEEECTTCEEEEEEECCC--SSCCBCCEEESSCHHHHHHHHHHHHHHCGGGT
T ss_pred CCcCEEEEEEecCCccEEcCC-------eEEECCCCEEEEEEEeCC--CCCCeeEEEeccccccchhhhhhhhccccccc
Confidence 34444566753 235665543 357889999998876431 23 5999887321 14
Q ss_pred CcccC----------C-------------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 79 YLRCD----------I-------------GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 79 Y~~C~----------~-------------~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
|..|. . +||.|.|+|.++ +||. | |+-.|.+
T Consensus 86 ~~p~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~--~H~~-G-M~G~i~V 138 (139)
T 2aan_A 86 YLPADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVP--GHYP-L-MQGKLVV 138 (139)
T ss_dssp TCCSCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCST--TTTT-T-SEEEEEE
T ss_pred ccCcccccccccccccCCCCEEEEEEECCCCeEEEEEcCCC--ChHH-c-CEEEEEE
Confidence 54442 1 699999999999 8999 9 9988765
No 10
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=97.75 E-value=6.3e-05 Score=49.68 Aligned_cols=73 Identities=18% Similarity=0.103 Sum_probs=48.9
Q ss_pred EEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcccC---------------cccCC--
Q 041261 23 KIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSY---------------LRCDI-- 84 (119)
Q Consensus 23 ~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y---------------~~C~~-- 84 (119)
+..+|++ .+..+.++ .-++++||++.|...... .|+|... +...+ +.=..
T Consensus 2 ~V~~g~~~~~~~F~P~-------~i~v~~G~tV~~~n~~~~----~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p 69 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYPD-------SITVSAGEAVEFTLVGET----GHNIVFD-IPAGAPGTVASELKAASMDENDLLSED 69 (102)
T ss_dssp EEEESCTTCCCCEESS-------EEEECTTCCEEEEECSSS----CBCCEEC-CCTTCCHHHHHHHHHTSCCTTCCBBTT
T ss_pred EEEEecCCCccEEeCC-------EEEECCCCEEEEEECCCC----CeEEEEe-CcccccccccchhhcccccccceecCC
Confidence 3556653 34554333 247888999999866532 6998876 43332 11001
Q ss_pred ---------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 85 ---------GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 85 ---------~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
++|.|.|+|. .||..| |+-.|.+
T Consensus 70 G~~~~~tf~~~G~y~y~C~----~H~~~g-M~G~i~V 101 (102)
T 1kdj_A 70 EPSFKAKVSTPGTYTFYCT----PHKSAN-MKGTLTV 101 (102)
T ss_dssp BCEEEECCCSCEEEEEECS----TTGGGT-CEEEEEE
T ss_pred CCEEEEEeCCCeEEEEEeC----CCcccC-CeEEEEE
Confidence 8999999999 499999 9988865
No 11
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=97.73 E-value=7.5e-05 Score=52.56 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=44.5
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEec----Cc-ccCcccC-------C-CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLP----NL-WSYLRCD-------I-GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~----~~-~~Y~~C~-------~-~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
-++++||++.|..... .|+|+... +. ..|+.=- + ++|.|.|.|. .||..| |+-.|.+
T Consensus 23 i~V~~GdtV~f~n~~~-----~H~v~~~~~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~----~H~~~g-M~G~I~V 92 (123)
T 1pmy_A 23 VRLKPGDSIKFLPTDK-----GHNVETIKGMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA----PHYMMG-MVALVVV 92 (123)
T ss_dssp EEECTTCEEEEECSSS-----SCCCEECTTSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS----TTTTTT-CEEEEEE
T ss_pred EEECCCCEEEEEECCC-----CcEEEEecccCCCCccceecCCCCEEEEEeCCCeEEEEEeC----CccccC-CEEEEEE
Confidence 4778899999998865 69998762 11 1232100 0 8999999998 499999 9999987
Q ss_pred cCCC
Q 041261 113 LLRR 116 (119)
Q Consensus 113 ~~~~ 116 (119)
...|
T Consensus 93 ~~~~ 96 (123)
T 1pmy_A 93 GDKR 96 (123)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 6544
No 12
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=97.69 E-value=8.1e-05 Score=52.39 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=44.4
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEec----Cc-ccCcccC-------C-CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLP----NL-WSYLRCD-------I-GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~----~~-~~Y~~C~-------~-~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
-++++||++.|..... .|+|...+ +. ..|+.=- + ++|.|.|.|. .||..| |+-.|.+
T Consensus 23 i~V~~GdtV~f~~~~~-----~H~v~~~~~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~----~H~~~g-M~G~I~V 92 (123)
T 1paz_A 23 IKANPGDTVTFIPVDK-----GHNVESIKDMIPEGAEKFKSKINENYVLTVTQPGAYLVKCT----PHYAMG-MIALIAV 92 (123)
T ss_dssp EEECTTCEEEEEESSS-----SCCCEECTTCSCTTCCCCBCCTTCCEEEECCSCEEEEEECT----TTGGGT-CEEEEEE
T ss_pred EEECCCCEEEEEECCC-----CeEEEEecccCCCCccceecCCCCEEEEEeCCCEEEEEEeC----CcccCC-CEEEEEE
Confidence 5788899999999865 59998741 11 1232200 0 8999999997 499999 9999987
Q ss_pred cCCC
Q 041261 113 LLRR 116 (119)
Q Consensus 113 ~~~~ 116 (119)
-..|
T Consensus 93 ~~~~ 96 (123)
T 1paz_A 93 GDSP 96 (123)
T ss_dssp SSSC
T ss_pred cCCC
Confidence 6533
No 13
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=97.68 E-value=0.00011 Score=48.76 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=48.2
Q ss_pred EEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCccc------------CcccCC-----
Q 041261 23 KIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWS------------YLRCDI----- 84 (119)
Q Consensus 23 ~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~------------Y~~C~~----- 84 (119)
+..||.+ .++.+.++ .-++++||++.|...... .|+|... +... ++.=..
T Consensus 5 ~V~~~~~~~~~~F~P~-------~i~v~~Gd~V~~~n~~~~----~H~~~~~-~~~~~~~~g~~~~~~~~~~~~~~pG~~ 72 (106)
T 2gim_A 5 TVKLGSDKGLLVFEPA-------KLTIKPGDTVEFLNNKVP----PHNVVFD-AALNPAKSADLAKSLSHKQLLMSPGQS 72 (106)
T ss_dssp EEEESCTTCCSSEESS-------EEEECTTCEEEEEECSSS----CCCBEEC-SSSSTTCCHHHHHHHCBCSCCCSTTCE
T ss_pred EEEEEecCCcceEcCC-------EEEECCCCEEEEEECCCC----CceEEEe-CCCCcccccccchhccccceeeCCCCE
Confidence 4556643 45665443 357888999999866432 6888865 3211 111001
Q ss_pred ---------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 85 ---------GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 85 ---------~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
+||.|+|.|. .||..| |+-.|.+
T Consensus 73 ~~~~f~~~~~~G~y~y~C~----~H~~~G-M~G~i~V 104 (106)
T 2gim_A 73 TSTTFPADAPAGEYTFYCE----PHRGAG-MVGKITV 104 (106)
T ss_dssp EEEECCTTCCSEEEEEECT----TTGGGT-CEEEEEE
T ss_pred EEEEEecCCCCceEEEEeC----ChhhcC-cEEEEEE
Confidence 6899999999 499999 9988875
No 14
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=97.61 E-value=0.00017 Score=47.09 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=40.8
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecCccc--------CcccCC-----------CCcceEEEccCCCCCCCCCCcc
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWS--------YLRCDI-----------GWQPYYFACDERGGLHWRDGRM 106 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~--------Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G~m 106 (119)
-++++||++.|...... .|+|... +... ++.=.. +||.|.|.|. .||..| |
T Consensus 21 i~v~~G~~V~~~n~~~~----~H~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~tf~~~G~y~y~C~----~H~~~g-M 90 (97)
T 1b3i_A 21 LSISAGDTVEFVMNKVG----PHNVIFD-KVPAGESAPALSNTKLAIAPGSFYSVTLGTPGTYSFYCT----PHRGAG-M 90 (97)
T ss_dssp EEECTTCEEEEEECSSC----CCCBEEE-ECCTTSCHHHHCBCCCCCSCSCCEEEECCSCSEEEEECS----STTTTT-C
T ss_pred EEECCCCEEEEEECCCC----CeEEEEe-CCCCccccccccccceecCCCCEEEEEeCCCeEEEEEcc----ChhhcC-C
Confidence 47888999999976532 6998876 2210 111011 8999999999 499999 9
Q ss_pred eEEEEe
Q 041261 107 KFMVLP 112 (119)
Q Consensus 107 Kl~V~p 112 (119)
+-.|.+
T Consensus 91 ~G~i~V 96 (97)
T 1b3i_A 91 VGTITV 96 (97)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 988865
No 15
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=97.58 E-value=8.9e-05 Score=49.03 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=49.1
Q ss_pred EEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCc--ccCcccC---------C------
Q 041261 23 KIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNL--WSYLRCD---------I------ 84 (119)
Q Consensus 23 ~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~--~~Y~~C~---------~------ 84 (119)
+..+|++ .+..+.++ .-++++||++.|..... ..|+|...... +.++.+. .
T Consensus 3 ~V~m~~~~~~~~F~P~-------~i~v~~GdtV~~~n~~~----~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~ 71 (98)
T 1iuz_A 3 IVKLGGDDGSLAFVPS-------KISVAAGEAIEFVNNAG----FPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVR 71 (98)
T ss_dssp EEEESCTTSCCSEESS-------EEEECTTCEEEEEECSS----CCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred EEEEecCCCCcEEeCC-------EEEECCCCEEEEEECCC----CCEEEEEeCCCCccccccccccccccccCCCCEEEE
Confidence 4455543 44655443 35788899999987653 27998876211 1233221 1
Q ss_pred ---CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 85 ---GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 85 ---~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
++|.|.|.|. -||..| |+-.|.+
T Consensus 72 tf~~~G~y~y~C~----~H~~~g-M~G~I~V 97 (98)
T 1iuz_A 72 KLSTPGVYGVYCE----PHAGAG-MKMTITV 97 (98)
T ss_dssp ECCSCEEEEEECT----TTGGGT-CEEEEEE
T ss_pred EcCCCEEEEEEch----hhccCC-CEEEEEE
Confidence 8999999998 399999 9988865
No 16
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=97.52 E-value=0.00016 Score=51.45 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=44.5
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEe----cCcc-cCcccCC---------CCcceEEEccCCCCCCCCCCcceEEEE
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLL----PNLW-SYLRCDI---------GWQPYYFACDERGGLHWRDGRMKFMVL 111 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V----~~~~-~Y~~C~~---------~~G~~YFiCg~~~g~HC~~G~mKl~V~ 111 (119)
-++++||++.|..... .|+|... |+.. .|+. .. +||.|+|.|. .||..| |+-.|.
T Consensus 25 i~V~~GDtVtf~n~~~-----~H~v~~~~~~~P~g~~~f~s-~pGet~s~TF~~pG~y~y~C~----~H~~~G-M~G~I~ 93 (127)
T 3tu6_A 25 IRAQPGDTVTFVAKDK-----GHNSALMKGGAPEGAETWKG-KINEEITVTLSKPGVYMYQCA----PHVGMG-MIGAIV 93 (127)
T ss_dssp EEECTTCEEEEECSSS-----SCCCEECTTCSCTTCCCCBC-CTTCCCEEECCSCEEEEEECT----TTGGGT-CEEEEE
T ss_pred EEECCCCEEEEEECCC-----CceEEEccCcCCCCccceec-CCCCEEEEEeCCCeEEEEEeC----CCCcCC-cEEEEE
Confidence 5788999999999865 5999875 1111 2221 11 9999999999 399999 999988
Q ss_pred ecCCC
Q 041261 112 PLLRR 116 (119)
Q Consensus 112 p~~~~ 116 (119)
+...|
T Consensus 94 V~~~~ 98 (127)
T 3tu6_A 94 VGEPA 98 (127)
T ss_dssp ESSCT
T ss_pred ECcCC
Confidence 76544
No 17
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.49 E-value=4.9e-05 Score=57.71 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=48.7
Q ss_pred EeCcEEEEEeCCCCCC----ccccceEEecCcccCcccCC-----------------------------------CCc-c
Q 041261 49 YVNDVLVFKYDPPNDT----VFPHSEYLLPNLWSYLRCDI-----------------------------------GWQ-P 88 (119)
Q Consensus 49 ~vGD~LvF~Y~~~~~~----~~~h~V~~V~~~~~Y~~C~~-----------------------------------~~G-~ 88 (119)
++||.|-|--+..... ...+.|++| ++++|+.|+. ++| .
T Consensus 27 ~igD~LdIiCP~~~~~~~~~~E~~~LY~V-s~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~~ 105 (178)
T 1iko_P 27 QIGDKLDIICPKVDSKTVGQYEYYKVYMV-DKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKD 105 (178)
T ss_dssp CTTCEEEEECCCCCSSSCSCCCBEEEEEE-CHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTEE
T ss_pred cCCCEEEEECCCCCCCCCCCceEEEEEEE-CHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence 5599999965443221 356899999 9999999987 576 5
Q ss_pred eEEEccCC---------CCCCCCCCcceEEEEecCCC
Q 041261 89 YYFACDER---------GGLHWRDGRMKFMVLPLLRR 116 (119)
Q Consensus 89 ~YFiCg~~---------~g~HC~~G~mKl~V~p~~~~ 116 (119)
|||||.-. .|+.|..=+|||.|.+...|
T Consensus 106 YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~ 142 (178)
T 1iko_P 106 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDA 142 (178)
T ss_dssp EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC-
T ss_pred eEEEecCCcccccccccCCCccccceeEEEEEeecCC
Confidence 88999863 13689663499999876554
No 18
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=97.41 E-value=0.00034 Score=45.96 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=48.5
Q ss_pred EEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcc---cCccc-----------CC---
Q 041261 23 KIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW---SYLRC-----------DI--- 84 (119)
Q Consensus 23 ~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~---~Y~~C-----------~~--- 84 (119)
+..+|++ .+..+.++ .-++++||++.|...... .|+|... +.. +.+.+ ..
T Consensus 2 ~v~m~~~~~~~~F~P~-------~i~v~~G~tV~~~n~~~~----~H~v~~~-~~~~p~~~~~~~~~~~~~~~~~~~G~~ 69 (99)
T 1plc_A 2 DVLLGADDGSLAFVPS-------EFSISPGEKIVFKNNAGF----PHNIVFD-EDSIPSGVDASKISMSEEDLLNAKGET 69 (99)
T ss_dssp EEEESCTTCCSCEESS-------EEEECTTCEEEEEECSSC----CBCCEEC-TTSSCTTCCHHHHCCCTTCCBCSTTCE
T ss_pred EEEEecCCCcceEeCC-------EEEECCCCEEEEEECCCC----ceEEEEe-CCCCcccccccccccccCccccCCCCE
Confidence 3456653 33554332 357889999999877542 6999876 321 11111 01
Q ss_pred ------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 85 ------GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 85 ------~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
++|.|.|.|. .||..| |+-.|.+
T Consensus 70 ~~~tf~~~G~y~~~C~----~H~~~g-M~G~i~V 98 (99)
T 1plc_A 70 FEVALSNKGEYSFYCS----PHQGAG-MVGKVTV 98 (99)
T ss_dssp EEEECCSCEEEEEECG----GGTTTT-CEEEEEE
T ss_pred EEEEECCCceEEEEcC----CCcccC-CEEEEEE
Confidence 8999999999 399999 9988865
No 19
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=97.39 E-value=0.00017 Score=47.17 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=48.8
Q ss_pred cEEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCc---ccCccc-------CC------
Q 041261 22 NKIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNL---WSYLRC-------DI------ 84 (119)
Q Consensus 22 ~~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~---~~Y~~C-------~~------ 84 (119)
.+..+|++ .++.+.++ .-++++||++.|...... .|+|... +. .+++.+ ..
T Consensus 2 ~~V~m~~~~~~~~F~P~-------~i~v~~G~~V~~~n~~~~----~H~~~~~-~~~~p~~~~~~~~~~~~~~~~pG~~~ 69 (98)
T 2plt_A 2 ATVKLGADSGALEFVPK-------TLTIKSGETVNFVNNAGF----PHNIVFD-EDAIPSGVNADAISRDDYLNAPGETY 69 (98)
T ss_dssp EEEEESCTTCCSSEESS-------EEEECTTCEEEEEECSSC----CEEEEEC-GGGSCTTCCHHHHCEEEEECSTTCEE
T ss_pred EEEEEecCCCCceEeCC-------EEEECCCCEEEEEECCCC----ceEEEEe-CCCCCCccccccccccceecCCCCEE
Confidence 34566643 34555433 247888999999877542 6998765 21 122211 00
Q ss_pred -----CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 85 -----GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 85 -----~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
++|.|.|.|. .||..| |+-.|.+
T Consensus 70 ~~tf~~~G~y~y~C~----~H~~~g-M~G~i~V 97 (98)
T 2plt_A 70 SVKLTAAGEYGYYCE----PHQGAG-MVGKIIV 97 (98)
T ss_dssp EEECCSCEEEEEECG----GGGGGT-CEEEEEE
T ss_pred EEEeCCCeEEEEEcC----CccccC-CeEEEEE
Confidence 8999999999 399999 9988865
No 20
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=97.32 E-value=0.00044 Score=48.76 Aligned_cols=60 Identities=22% Similarity=0.134 Sum_probs=44.2
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEe----cCcc-cCcccCC---------CCcceEEEccCCCCCCCCCCcceEEEE
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLL----PNLW-SYLRCDI---------GWQPYYFACDERGGLHWRDGRMKFMVL 111 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V----~~~~-~Y~~C~~---------~~G~~YFiCg~~~g~HC~~G~mKl~V~ 111 (119)
-++++||++.|..... .|+|... |+.. .|+. .. +||.|.|.|. .||..| |+=.|.
T Consensus 23 i~V~~GdtV~f~~~~~-----~H~v~~~~~~~P~g~~~f~~-~pg~t~s~TF~~pG~y~y~C~----~H~~~G-M~G~I~ 91 (123)
T 3erx_A 23 VRAEPGDVINFVPTDK-----SHNVEAIKEILPEGVESFKS-KINESYTLTVTEPGLYGVKCT----PHFGMG-MVGLVQ 91 (123)
T ss_dssp EEECTTEEEEEEESST-----TCCCEECTTSSCTTCCCCBC-CTTCCEEEEECSCEEEEEECG----GGTTTT-CEEEEE
T ss_pred EEECCCCEEEEEECCC-----CceEEEcCCcCCCCccceec-CCCCEEEEEeCCCeEEEEEeC----CCCcCC-cEEEEE
Confidence 5788999999999865 5999864 2211 2321 11 9999999999 499999 998888
Q ss_pred ecCCC
Q 041261 112 PLLRR 116 (119)
Q Consensus 112 p~~~~ 116 (119)
+-..|
T Consensus 92 V~~~~ 96 (123)
T 3erx_A 92 VGDAP 96 (123)
T ss_dssp ESSSC
T ss_pred ECCCC
Confidence 76433
No 21
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=97.28 E-value=0.00034 Score=45.73 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=47.8
Q ss_pred EEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCccc---------CcccCC--------
Q 041261 23 KIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWS---------YLRCDI-------- 84 (119)
Q Consensus 23 ~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~---------Y~~C~~-------- 84 (119)
+..+|.+ .+..+.++ .-++++||++.|...... .|+|... +... ++.-..
T Consensus 4 ~V~~~~~~~~~~F~P~-------~i~v~~G~~V~~~n~~~~----~H~~~~~-~~~~pg~~~~~~~~~~~~~~pG~~~~~ 71 (98)
T 1pcs_A 4 TVKMGSDSGALVFEPS-------TVTIKAGEEVKWVNNKLS----PHNIVFD-ADGVPADTAAKLSHKGLLFAAGESFTS 71 (98)
T ss_dssp EEEESCTTSCSSEESS-------EEEECTTCEEEEEECSSC----CEEEEEC-CSSSCHHHHHHHCEEEEECSTTCEEEE
T ss_pred EEEEecCCCccEEeCC-------EEEECCCCEEEEEECCCC----CcEEEEe-CCCCCccccccccccccccCCCCEEEE
Confidence 4556543 44554433 247888999999966432 6998775 3210 111111
Q ss_pred ---CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 85 ---GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 85 ---~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
++|.|.|.|. .||..| |+-.|.+
T Consensus 72 tf~~~G~y~~~C~----~H~~~g-M~G~i~V 97 (98)
T 1pcs_A 72 TFTEPGTYTYYCE----PHRGAG-MVGKVVV 97 (98)
T ss_dssp ECCSCEEEEEECG----GGTTTT-CEEEEEE
T ss_pred EcCCCeEEEEEcC----CccccC-CeEEEEE
Confidence 8999999999 399999 9988865
No 22
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=97.25 E-value=0.00043 Score=45.34 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=48.5
Q ss_pred EEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCc---ccCccc-----------CC---
Q 041261 23 KIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNL---WSYLRC-----------DI--- 84 (119)
Q Consensus 23 ~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~---~~Y~~C-----------~~--- 84 (119)
+..+|++ .+..+.++ .-++++||++.|...... .|+|... +. ..++.+ ..
T Consensus 2 ~V~~~~~~~~~~F~P~-------~i~v~~G~tV~~~n~~~~----~H~~~~~-~~~~p~g~~~~~~~~~~~~~~~~~G~~ 69 (99)
T 1byp_A 2 EVLLGSSDGGLAFVPS-------DLSIASGEKITFKNNAGF----PHNDLFD-KKEVPAGVDVTKISMPEEDLLNAPGEE 69 (99)
T ss_dssp EEEESCTTSCCSEESS-------EEEECTTEEEEEEECSSC----CBCCEEC-TTSSCTTCCHHHHSCCTTCCBCSTTCE
T ss_pred EEEEecCCCcceEeCC-------EEEECCCCEEEEEECCCC----cceEEEe-CCCCccccccccccccccceeeCCCCE
Confidence 3456643 44554433 247888999999877542 6998876 32 112211 00
Q ss_pred ------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 85 ------GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 85 ------~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
++|.|.|.|. .||..| |+-.|.+
T Consensus 70 ~~~~f~~~G~y~~~C~----~H~~~g-M~G~i~V 98 (99)
T 1byp_A 70 YSVTLTEKGTYKFYCA----PHAGAG-MVGKVTV 98 (99)
T ss_dssp EEEEECSCEEEEEECG----GGTTTT-CEEEEEE
T ss_pred EEEEeCCCcEEEEEcC----CccccC-CEEEEEE
Confidence 8999999999 399999 9988865
No 23
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=97.17 E-value=0.00051 Score=50.23 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=27.7
Q ss_pred eEeCcEEEEEeCCCCCC-----ccccceEEecCcccCcccCC
Q 041261 48 FYVNDVLVFKYDPPNDT-----VFPHSEYLLPNLWSYLRCDI 84 (119)
Q Consensus 48 F~vGD~LvF~Y~~~~~~-----~~~h~V~~V~~~~~Y~~C~~ 84 (119)
+++||.|-+--+...++ ...+.+++| ++++|++|+.
T Consensus 25 V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~V-s~~~y~~C~~ 65 (138)
T 1shx_A 25 VCINDYLDVFCPHYEDSVPEDKTERYVLYMV-NFDGYSACDH 65 (138)
T ss_dssp ECTTCEEEEECCCCCTTCCSTTCCCEEEEEE-CHHHHHTTCS
T ss_pred ecCCCEEEEECCCCCCCCCCCCceEEEEEEE-CHHHhccccC
Confidence 56799999865544332 357789999 9999999987
No 24
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=97.16 E-value=0.00066 Score=48.16 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=42.4
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecCc---c---cCccc--CC------CCcceEEEccCCCCCCCCCCcceEEEE
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNL---W---SYLRC--DI------GWQPYYFACDERGGLHWRDGRMKFMVL 111 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~---~---~Y~~C--~~------~~G~~YFiCg~~~g~HC~~G~mKl~V~ 111 (119)
-++++||++.|..... .|+|... +. . .+..= .. ++|.|.|.|. .||..| |+=.|.
T Consensus 24 i~V~~GDTV~f~n~~~-----~Hnv~~~-~~~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y~C~----~H~~~G-M~G~I~ 92 (124)
T 3ef4_A 24 VKVEAGDTVKFVPTDK-----SHNAESV-REVWPEGVAPVKGGFSKEVVFNAEKEGLYVLKCA----PHYGMG-MVVLVQ 92 (124)
T ss_dssp EEECTTCEEEEECSSS-----SCCCEEC-TTTSCTTSCCCBCCTTCCEEEECCSSEEEEEECT----TTGGGT-CEEEEE
T ss_pred EEECCCCEEEEEECCC-----CccEEEe-CCcCCCCccccccCCCCEEEEEeCCCeEEEEEcC----CCCcCC-CEEEEE
Confidence 5788999999998864 6999886 22 1 11110 00 9999999997 499999 988887
Q ss_pred ecC
Q 041261 112 PLL 114 (119)
Q Consensus 112 p~~ 114 (119)
+-.
T Consensus 93 V~~ 95 (124)
T 3ef4_A 93 VGK 95 (124)
T ss_dssp ESS
T ss_pred ECC
Confidence 653
No 25
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=97.05 E-value=0.00084 Score=50.04 Aligned_cols=65 Identities=20% Similarity=0.157 Sum_probs=45.4
Q ss_pred eEeCcEEEEEeCCCCCC------ccccceEEecCcccCcccCC-------------------------------------
Q 041261 48 FYVNDVLVFKYDPPNDT------VFPHSEYLLPNLWSYLRCDI------------------------------------- 84 (119)
Q Consensus 48 F~vGD~LvF~Y~~~~~~------~~~h~V~~V~~~~~Y~~C~~------------------------------------- 84 (119)
+++||.|-+--+..... .....+++| ++++|++|+.
T Consensus 34 V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~V-s~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~E 112 (157)
T 2wo3_B 34 VSINDYLDIYCPHYGAPLPPAERMEHYVLYMV-NGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGFE 112 (157)
T ss_dssp ECTTCEEEEECCCCCSSCCCGGGSCCEEEEEE-CHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSCC
T ss_pred eccCCEEEEECCCCCCCCCCCCCceEEEEEEE-CHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCee
Confidence 56799999864433221 345678999 9999999987
Q ss_pred -CCcc-eEEEccCC---CCCCCCCCcceEEEEecCC
Q 041261 85 -GWQP-YYFACDER---GGLHWRDGRMKFMVLPLLR 115 (119)
Q Consensus 85 -~~G~-~YFiCg~~---~g~HC~~G~mKl~V~p~~~ 115 (119)
+||. ||||+.-. .|+-|. +|||.|.|.+.
T Consensus 113 F~pG~~YY~ISTS~g~~~gg~C~--rlkV~V~~~~~ 146 (157)
T 2wo3_B 113 FRPGHEYYYISATPPNAVDRPCL--RLKVYVRPTQE 146 (157)
T ss_dssp CCTTCEEEEEEECTTCSCCTTCC--EEEEEECCCC-
T ss_pred eeCCCeEEEEEecCCCCCCCcce--eEEEEEEcCCC
Confidence 6666 77888542 235676 48888887764
No 26
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=97.01 E-value=0.0013 Score=49.93 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=27.8
Q ss_pred eEeCcEEEEEeCCCCCC-----ccccceEEecCcccCcccCC
Q 041261 48 FYVNDVLVFKYDPPNDT-----VFPHSEYLLPNLWSYLRCDI 84 (119)
Q Consensus 48 F~vGD~LvF~Y~~~~~~-----~~~h~V~~V~~~~~Y~~C~~ 84 (119)
+++||.|-+--+...++ ...+.+++| ++++|++|+.
T Consensus 54 V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~V-s~e~y~~C~~ 94 (177)
T 2x11_B 54 VCINDYLDVFCPHYEDSVPEDKTERYVLYMV-NFDGYSACDH 94 (177)
T ss_dssp ECTTCEEEEECCCCCSSSCSSSCCCEEEEEE-CHHHHHHTCC
T ss_pred ecCCCEEEEECCCCCCCCCCCCceEEEEEEE-CHHHhccccC
Confidence 56799999865544332 357889999 9999999987
No 27
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=96.96 E-value=0.00042 Score=50.68 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=45.2
Q ss_pred EeCcEEEEEeCCCCCC----ccccceEEecCcccCcccCC-----------------------------------CCcc-
Q 041261 49 YVNDVLVFKYDPPNDT----VFPHSEYLLPNLWSYLRCDI-----------------------------------GWQP- 88 (119)
Q Consensus 49 ~vGD~LvF~Y~~~~~~----~~~h~V~~V~~~~~Y~~C~~-----------------------------------~~G~- 88 (119)
++||.|-+--+..... ...+.+++| ++++|++|+. ++|.
T Consensus 26 ~i~D~ldIiCP~~~~~~~~~~E~~~lY~V-s~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~~ 104 (140)
T 2vsm_B 26 QIGDKLDIICPKVDSKTVGQYEYYKVYMV-DKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKD 104 (140)
T ss_dssp CTTCEEEEEECCCC---CCCCCBEEEEEE-CHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTEE
T ss_pred cCCCEEEEECCCCCCCCCCCceEEEEEEE-CHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence 5689999976544322 346889999 9999999987 6665
Q ss_pred eEEEccCC---------CCCCCCCCcceEEEEec
Q 041261 89 YYFACDER---------GGLHWRDGRMKFMVLPL 113 (119)
Q Consensus 89 ~YFiCg~~---------~g~HC~~G~mKl~V~p~ 113 (119)
||||+.-. .||-|..=+|||.|.+-
T Consensus 105 YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~ 138 (140)
T 2vsm_B 105 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG 138 (140)
T ss_dssp EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEET
T ss_pred eEEEecCCCCccccccccCCccccceEEEEEEec
Confidence 66777643 13468654599998764
No 28
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=96.46 E-value=0.0023 Score=42.29 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=38.2
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-----------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-----------GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
-++++||++.|.+... |.+ .|++..- +...-..-.. +||.|.|.|. .||..| |+=.|.+
T Consensus 30 i~v~~G~tV~~~~~n~-d~~-~H~~~~~-~~~~~~~~~pg~~~~~~~t~~~~G~Y~y~C~----~H~~~g-M~G~i~V 99 (100)
T 4hci_A 30 ITIPINESTTLLLKNK-GKS-EHTFTIK-KLGIDVVVESGKEKNITVKPKSAGTYELICR----YHLLKG-MEGKVIV 99 (100)
T ss_dssp EEECTTSCEEEEEEEC-SSS-CEEEEEG-GGTEEEEECTTCEEEEEECCCSCEEEEEECT----TTGGGT-CEEEEEE
T ss_pred EEECCCCEEEEEEEcC-CCc-eEEEEEe-cCCcceeecCCcceeEEEecccCceEEEECc----cccCCC-CEEEEEE
Confidence 5788999999987532 222 5776543 2111000000 8999999996 599999 9877764
No 29
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=96.34 E-value=0.0033 Score=46.01 Aligned_cols=65 Identities=18% Similarity=0.121 Sum_probs=46.2
Q ss_pred CeEeCcEEEEEeCCCCCC-------ccccceEEecCcccCcccCC-----------------------------------
Q 041261 47 PFYVNDVLVFKYDPPNDT-------VFPHSEYLLPNLWSYLRCDI----------------------------------- 84 (119)
Q Consensus 47 ~F~vGD~LvF~Y~~~~~~-------~~~h~V~~V~~~~~Y~~C~~----------------------------------- 84 (119)
.+++||.|-+--+...+. ...+.+++| ++++|++|+.
T Consensus 23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~V-s~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF 101 (141)
T 3d12_B 23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLV-EGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF 101 (141)
T ss_dssp CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEE-CSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEE-CHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee
Confidence 346689999865544321 367889999 9999999997
Q ss_pred CCcc-eEEEccCCC---------CCCCCCCcceEEEEe
Q 041261 85 GWQP-YYFACDERG---------GLHWRDGRMKFMVLP 112 (119)
Q Consensus 85 ~~G~-~YFiCg~~~---------g~HC~~G~mKl~V~p 112 (119)
+||. ||||+.-.. ||-|..=+|||.|.+
T Consensus 102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V 139 (141)
T 3d12_B 102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRV 139 (141)
T ss_dssp CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEEC
T ss_pred eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEe
Confidence 7766 667776531 346865349999875
No 30
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=96.22 E-value=0.0049 Score=46.93 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=26.4
Q ss_pred eEeCcEEEEEeCCCCCC------ccccceEEecCcccCcccCC
Q 041261 48 FYVNDVLVFKYDPPNDT------VFPHSEYLLPNLWSYLRCDI 84 (119)
Q Consensus 48 F~vGD~LvF~Y~~~~~~------~~~h~V~~V~~~~~Y~~C~~ 84 (119)
+++||.|-+--+..... ...+.+++| ++++|++|+.
T Consensus 52 V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~V-s~e~y~sC~~ 93 (182)
T 3czu_B 52 VQLNDYVDIICPHYEDHSVADAAMEQYILYLV-EHEEYQLCQP 93 (182)
T ss_dssp ECTTCEEEEECCCCC--CCCGGGSCCEEEEEE-CHHHHHHTCC
T ss_pred eccCCEEEEECCCCCCCCCCCCCceEEEEEEE-CHHHhhhccC
Confidence 46799999865443221 356789999 9999999986
No 31
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=96.01 E-value=0.0084 Score=39.10 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=45.8
Q ss_pred EEEecCC-CCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCccc------------CcccCC-----
Q 041261 23 KIIVGSS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWS------------YLRCDI----- 84 (119)
Q Consensus 23 ~~~VGg~-~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~------------Y~~C~~----- 84 (119)
+..+|.+ .+..+.+. .-++++||++.|...... .|+|..- ...- .+.+..
T Consensus 4 ~V~~~~~~~~~~f~p~-------~i~v~~Gd~V~~~N~~~~----~H~v~~~-~~~~~~~~g~~~~~~~~~~~~i~pG~~ 71 (105)
T 3cvb_A 4 TVKMGADSGLFQFEPA-------NVTVHPGDTVKWVNNKLP----PHNILFD-DKQVPGASKELADKLSHSQLMFSPGES 71 (105)
T ss_dssp EEEESCTTCCSCEESS-------EEEECTTEEEEEEECSSC----CEEEEEC-TTSSGGGCHHHHHHHCEEEEECSTTCE
T ss_pred EEEEeecCCccEEeCC-------EEEEcCCCEEEEEECCCC----CCeEEEe-CCCCCcccccccccccccccccCCCCe
Confidence 3456543 44554432 247788999999865432 5777654 2110 122322
Q ss_pred ---------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 85 ---------GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 85 ---------~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
++|.++|.|. + |+..| |+-.|.+
T Consensus 72 ~~~~f~~~~~~G~y~y~C~-~---H~~~G-M~G~i~V 103 (105)
T 3cvb_A 72 YEITFSSDFPAGTYTYYCA-P---HRGAG-MVGKITV 103 (105)
T ss_dssp EEEEECTTSCSEEEEEECT-T---TGGGT-CEEEEEE
T ss_pred EEEEEecCCCCeeEEEEeC-C---chhcC-CEEEEEE
Confidence 6899999999 3 99999 9887765
No 32
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=95.55 E-value=0.029 Score=37.28 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=46.2
Q ss_pred CcEEEecCCCCCCCCCCchhhhcCCCCeEeCcEEEEEeCCCCCCccccceEEecCcc----cCcccCC-----------C
Q 041261 21 PNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW----SYLRCDI-----------G 85 (119)
Q Consensus 21 a~~~~VGg~~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~----~Y~~C~~-----------~ 85 (119)
+.++.|-- .+|.+.+. .-++++||++.|..... ..|+|... +.. .++.... +
T Consensus 18 a~~~~V~~-~~~~F~P~-------~i~v~~Gd~V~~~N~d~----~~H~v~~~-~~~~g~~~~~~~~~~pG~~~~~tf~~ 84 (105)
T 2ov0_A 18 DGAIVVDI-AKMKYETP-------ELHVKVGDTVTWINREA----MPHNVHFV-AGVLGEAALKGPMMKKEQAYSLTFTE 84 (105)
T ss_dssp TTCEEEEE-ETTEESSS-------EEEECTTCEEEEEECSS----SCBCCEEC-TTTSSSSCEECCCBCTTEEEEEEECS
T ss_pred CcCEEEEE-eecEEcCC-------EEEECCCCEEEEEECCC----CCEEEEEc-CCCCCcccccccccCCCCEEEEEeCC
Confidence 45555532 34554432 34778899999985543 26998765 322 1555533 8
Q ss_pred CcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 86 WQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 86 ~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
+|.|.|.|... - | |+-.|.+
T Consensus 85 ~G~y~y~C~~H----~--g-M~G~i~V 104 (105)
T 2ov0_A 85 AGTYDYHCTPH----P--F-MRGKVVV 104 (105)
T ss_dssp CEEEEEECSSC----T--T-CEEEEEE
T ss_pred CEEEEEEeCCC----C--C-CEEEEEE
Confidence 99999999864 3 7 8877754
No 33
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=95.36 E-value=0.035 Score=41.13 Aligned_cols=24 Identities=29% Similarity=0.090 Sum_probs=20.3
Q ss_pred CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 85 GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 85 ~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
++|.|.|+|..+ +|=+ | ||=.|.+
T Consensus 142 kpG~Y~f~Ct~P--gH~~-g-M~G~i~V 165 (167)
T 3ay2_A 142 ADGDYKFACTFP--GHGA-L-MNGKVTL 165 (167)
T ss_dssp TTSCEEEECCST--TGGG-T-SEEEEEE
T ss_pred CCcEEEEEcCCC--Cchh-c-CEEEEEE
Confidence 489999999999 8888 8 8877765
No 34
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=94.91 E-value=0.033 Score=40.30 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=26.9
Q ss_pred eEeCcEEEEEeCCCCCC------ccccceEEecCcccCcccCC
Q 041261 48 FYVNDVLVFKYDPPNDT------VFPHSEYLLPNLWSYLRCDI 84 (119)
Q Consensus 48 F~vGD~LvF~Y~~~~~~------~~~h~V~~V~~~~~Y~~C~~ 84 (119)
+++||.|-+--+...+. ...+.+++| ++++|++|+.
T Consensus 24 V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~V-s~~~y~~C~~ 65 (132)
T 3hei_B 24 VQLNDYVDIICPHYEDHSVADAAMEQYILYLV-EHEEYQLCQP 65 (132)
T ss_dssp ECTTCEEEEECCCCCTTSSCGGGCCCEEEEEE-CHHHHHHTCC
T ss_pred eCCCCeEEEECCCCCCCCCCCCCccEEEEEEe-CHHHhccccC
Confidence 36699998855443221 356789999 9999999997
No 35
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=94.91 E-value=0.06 Score=35.93 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=38.0
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecCcc----cCcccCC-----------CCcceEEEccCCCCCCCCCCcceEEE
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW----SYLRCDI-----------GWQPYYFACDERGGLHWRDGRMKFMV 110 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~----~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V 110 (119)
-++++||++.|..... ..|+|... +.. .|+.=.. ++|.|.|.|.. |. | |+-.|
T Consensus 36 i~V~~G~tV~~~N~d~----~~H~v~~~-~~~~~~~~~~s~~l~~g~~~~~tf~~~G~y~~~C~~----H~--~-M~G~I 103 (106)
T 1id2_A 36 VTIKAGETVYWVNGEV----MPHNVAFK-KGIVGEDAFRGEMMTKDQAYAITFNEAGSYDYFCTP----HP--F-MRGKV 103 (106)
T ss_dssp EEECTTCEEEEEECSS----SCBCCEEC-TTTSSSSCEECCCBCTTEEEEEEECSCEEEEEECSS----CT--T-CEEEE
T ss_pred EEECCCCEEEEEECCC----CcEEEEEe-CCCCCcccccccccCCCCEEEEEeCCCEEEEEEeCC----CC--C-CEEEE
Confidence 4778899999985543 26998765 322 1332211 89999999985 65 8 98877
Q ss_pred Ee
Q 041261 111 LP 112 (119)
Q Consensus 111 ~p 112 (119)
.+
T Consensus 104 ~V 105 (106)
T 1id2_A 104 IV 105 (106)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 36
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=94.39 E-value=0.18 Score=35.50 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=19.9
Q ss_pred CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 85 GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 85 ~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
++|.|.|+|+.+ +|=+ | ||=.|.+
T Consensus 104 ~~G~Y~f~C~~p--gH~~-~-M~G~i~V 127 (129)
T 1cuo_A 104 KDEAYTYFCSYP--GHFS-M-MRGTLKL 127 (129)
T ss_dssp TTSCEEEECCST--TCTT-T-SEEEEEE
T ss_pred CCceEEEEeCCC--CchH-c-CEEEEEE
Confidence 379999999999 8888 8 8866654
No 37
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=93.78 E-value=0.14 Score=35.71 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=38.0
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecCcc----cCcccCC-----------CCcceEEEccCCCCCCCCCCcceEEE
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW----SYLRCDI-----------GWQPYYFACDERGGLHWRDGRMKFMV 110 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~----~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G~mKl~V 110 (119)
-++++||++.|..... ..|+|... +.. .|+.=.. ++|.|.|.|.. |. | |+-.|
T Consensus 62 i~V~~GdtV~~~N~d~----~~H~v~~~-~~~~g~~~~~s~~l~pG~t~~~tF~~~G~y~y~C~~----H~--g-M~G~I 129 (132)
T 3c75_A 62 VTIKAGETVYWVNGEV----MPHNVAFK-KGIVGEDAFRGEMMTKDQAYAITFNEAGSYDYFCTP----HP--F-MRGKV 129 (132)
T ss_dssp EEECTTCEEEEEECSS----SCBCCEEC-TTTSSSSCEECCCBCTTEEEEEEECSCEEEEEECSS----CT--T-CEEEE
T ss_pred EEECCCCEEEEEECCC----CceEEEEe-CCCCCcccccccccCCCCEEEEEcCCCEEEEEEeCC----Cc--C-CEEEE
Confidence 5778899999985543 26998875 322 2332111 89999999985 55 8 98877
Q ss_pred Ee
Q 041261 111 LP 112 (119)
Q Consensus 111 ~p 112 (119)
.+
T Consensus 130 ~V 131 (132)
T 3c75_A 130 IV 131 (132)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 38
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=93.75 E-value=0.17 Score=35.62 Aligned_cols=23 Identities=30% Similarity=0.121 Sum_probs=19.1
Q ss_pred Ccc-eEEEccCCCCCCCCCCcceEEEEe
Q 041261 86 WQP-YYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 86 ~G~-~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
+|. |.|+|+++ +|=+ | ||=.|.+
T Consensus 104 ~G~~Y~f~C~~P--gH~~-g-M~G~i~V 127 (128)
T 1nwp_A 104 AGEKYGFFCSFP--GHIS-M-MKGTVTL 127 (128)
T ss_dssp TTSCEEEECCST--TCGG-G-SEEEEEE
T ss_pred CCceEEEEECCC--ChhH-C-CEEEEEE
Confidence 676 99999999 8988 8 9877654
No 39
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=92.53 E-value=0.59 Score=32.74 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=18.5
Q ss_pred Ccc-eEEEccCCCCCCCCCCcceEEEEe
Q 041261 86 WQP-YYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 86 ~G~-~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
+|. |.|+|..+ +|=+ | ||=.|.+
T Consensus 104 ~G~~Y~f~C~~p--gH~~-g-M~G~i~V 127 (129)
T 2ccw_A 104 AGENYAYFCSFP--GHWA-M-MKGTLKL 127 (129)
T ss_dssp TTCCEEEECCST--TGGG-T-SEEEEEE
T ss_pred CCceEEEEeCCC--ChhH-c-CEEEEEE
Confidence 555 99999999 8888 8 8876654
No 40
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=92.13 E-value=0.25 Score=34.17 Aligned_cols=59 Identities=14% Similarity=-0.017 Sum_probs=39.5
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEec----Ccc-cCcc-----cC--C-CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLP----NLW-SYLR-----CD--I-GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~----~~~-~Y~~-----C~--~-~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
-++++||++.|..... .|+|.... +.. .|+. -. + ++|.|.|.|.. |.. |+-.|.+
T Consensus 23 i~V~~GdtV~f~n~d~-----~H~v~~~~~~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~----H~~---M~G~I~V 90 (122)
T 2ux6_A 23 LKVAPGDTVTFIPTDK-----GHNVETIKGMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP----HPF---MVGVVQV 90 (122)
T ss_dssp EEECTTEEEEEEESSS-----SCCCEECTTCSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT----EEE---EEEEEEE
T ss_pred EEECCCCEEEEEECCC-----CcEEEEcccccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC----Ccc---CEEEEEE
Confidence 4678899999998755 59998752 211 2211 00 0 89999999985 564 7777776
Q ss_pred cCCC
Q 041261 113 LLRR 116 (119)
Q Consensus 113 ~~~~ 116 (119)
...|
T Consensus 91 ~~~p 94 (122)
T 2ux6_A 91 GDAP 94 (122)
T ss_dssp SSSC
T ss_pred eCCC
Confidence 6544
No 41
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=90.97 E-value=1.1 Score=31.42 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=19.4
Q ss_pred CCcc-eEEEccCCCCCCCCCCcceEEEEe
Q 041261 85 GWQP-YYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 85 ~~G~-~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
++|. |.|+|+++ +|=+ | ||=.|.+
T Consensus 102 ~~G~~Y~f~C~~P--gH~~-g-M~G~i~V 126 (128)
T 2iaa_C 102 KEGEDYAFFCSFP--GHWS-I-MKGTIEL 126 (128)
T ss_dssp CTTCCEEEECCST--TCTT-T-SEEEEEE
T ss_pred CCCceEEEEECCC--ChhH-C-CEEEEEE
Confidence 3685 99999999 8988 8 8876654
No 42
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=90.30 E-value=0.35 Score=31.95 Aligned_cols=58 Identities=7% Similarity=-0.046 Sum_probs=36.9
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-------------CCcceEEEccCCCCCCCCCCcceEEEEe
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-------------GWQPYYFACDERGGLHWRDGRMKFMVLP 112 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-------------~~G~~YFiCg~~~g~HC~~G~mKl~V~p 112 (119)
-++++||.+.|.+.+. +.+ .|++..- +... .+.. +||.|+|.|.. ||..+.|+-.|.+
T Consensus 40 i~v~~G~~V~~~~~n~-d~~-~H~~~i~-~~~~--~~~i~pG~~~~~~f~~~~~G~y~~~C~~----~~~~~~M~g~i~V 110 (112)
T 1iby_A 40 LVVKKGDAVKVVVENK-SPI-SEGFSID-AFGV--QEVIKAGETKTISFTADKAGAFTIWCQL----HPKNIHLPGTLNV 110 (112)
T ss_dssp EEEETTCEEEEEEEEC-SSS-CEEEEEG-GGTE--EEEECTTCEEEEEEECCSCEEEEEBCSS----SCTTTBCCEEEEE
T ss_pred EEEeCCCEEEEEEEEC-CCC-eEEEEEc-CCCc--eeEeCCCCEEEEEEECCCCEEEEEECCC----CCchHHCEEEEEE
Confidence 4678899999987654 222 5886532 2211 1221 89999999996 5754337776654
No 43
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=89.23 E-value=0.72 Score=32.48 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=37.9
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecCcccCc-cc-----C-----C-CCcceEEEccCCCCCCCC---CCcceEEE
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYL-RC-----D-----I-GWQPYYFACDERGGLHWR---DGRMKFMV 110 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~-~C-----~-----~-~~G~~YFiCg~~~g~HC~---~G~mKl~V 110 (119)
-.+.+||.+.|...+. | + .|+... ++.. .+ .. + + ++|.|+|.|.. +|- .+ |+..|
T Consensus 62 l~Vp~G~~V~~~vts~-D-V-~Hsf~i-p~~~-~k~d~~PG~~~~~~~~~~~~G~y~~~C~e----~CG~~H~~-M~g~v 131 (135)
T 2cua_A 62 IEVPQGAEIVFKITSP-D-V-IHGFHV-EGTN-INVEVLPGEVSTVRYTFKRPGEYRIICNQ----YCGLGHQN-MFGTI 131 (135)
T ss_dssp EEEETTSEEEEEEEBS-S-S-CEEEEE-TTSS-CEEEECBTBCEEEEEECCSCEEEEEECCS----CCSTTSTT-CEEEE
T ss_pred EEEcCCCEEEEEEEeC-C-c-cceEEe-cCCC-ceeEeCCCCcEEEEEEcCCCEEEEEECcc----cCCCCcCC-CEEEE
Confidence 4778899999998754 3 2 587643 2321 10 00 0 0 99999999986 354 45 99888
Q ss_pred Eec
Q 041261 111 LPL 113 (119)
Q Consensus 111 ~p~ 113 (119)
.+.
T Consensus 132 ~V~ 134 (135)
T 2cua_A 132 VVK 134 (135)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 44
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=81.57 E-value=1.5 Score=35.42 Aligned_cols=60 Identities=8% Similarity=-0.012 Sum_probs=41.1
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-------------CCcceEEEccCCCCCCCCCCcceEEEE
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-------------GWQPYYFACDERGGLHWRDGRMKFMVL 111 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-------------~~G~~YFiCg~~~g~HC~~G~mKl~V~ 111 (119)
-+++.||+++|+..... .. .|++..- ....-..|.. ++|.++|.|..+ +|=..| |+-.|.
T Consensus 57 i~v~~Gd~v~~~~~N~~-~~-~h~~~~~-g~~~~~~~~i~pG~~~~~~f~~~~~Gt~~y~~~~~--~h~~~G-m~G~i~ 129 (447)
T 2dv6_A 57 LVVHEGETVQVNLVNGE-GA-QHDVVVD-QYAARSAIVNGKNASSTFSFVASKVGEFNYYCSIA--GHRQAG-MEGNIQ 129 (447)
T ss_dssp EEEETTCEEEEEEECSS-SS-CBCCEET-TTTEECCCBCSTTBEEEEEEECCSCEEEEEECCST--THHHHT-CEEEEE
T ss_pred EEEcCCCEEEEEEEcCC-CC-ceEEEEc-cCCcccceecCCCCeEEEEEEcCCCEEEEEEeCCC--ChhhCC-CEEEEE
Confidence 46788999998886542 22 3877542 4444456754 789999999988 787778 654443
No 45
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=75.34 E-value=6.2 Score=28.92 Aligned_cols=59 Identities=19% Similarity=0.127 Sum_probs=38.2
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-----------CCcceEEEccCCCCCCCCCC--cceEEEEe
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-----------GWQPYYFACDERGGLHWRDG--RMKFMVLP 112 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G--~mKl~V~p 112 (119)
-.+.+|+.+.|.-.+. | + .|+... |+..-=..... +||.||+.|.. .|-.| .|+..|.+
T Consensus 95 l~VP~G~~Vr~~vTS~-D-V-iHsf~I-P~lgik~da~PG~~n~~~~~~~kpG~y~g~Cse----~CG~~Hs~M~g~V~V 166 (168)
T 3s8f_B 95 IEVPQGAEIVFKITSP-D-V-IHGFHV-EGTNINVEVLPGEVSTVRYTFKRPGEYRIICNQ----YCGLGHQNMFGTIVV 166 (168)
T ss_dssp EEEETTSEEEEEEECS-S-S-CEEEEE-TTSSCEEEECTTBCEEEEEECCSCEEEEEECCS----CCSTTGGGCEEEEEE
T ss_pred EEEeCCCeEEEEEecC-C-c-eEEEEE-CCCCeEEEecCCceeEEEEEeCCCEEEEEECCc----CCCCCcCCCEEEEEE
Confidence 5778899999998764 3 2 576543 23211000111 99999999996 36665 59888875
No 46
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=72.78 E-value=1.2 Score=29.54 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=18.3
Q ss_pred CCCeEeCcEEEEEeCCCCCCccccceEEe
Q 041261 45 NAPFYVNDVLVFKYDPPNDTVFPHSEYLL 73 (119)
Q Consensus 45 ~k~F~vGD~LvF~Y~~~~~~~~~h~V~~V 73 (119)
...+++||.|+|.|.... .-.|...
T Consensus 75 ~~~L~~GD~lvF~~~~~~----~f~V~If 99 (104)
T 1yel_A 75 DNNLEDGKYLQFIYDRDR----TFYVIIY 99 (104)
T ss_dssp HHTCCTTCEEEEEECSSS----EEEEEEE
T ss_pred HcCCCCCCEEEEEEcCCC----eEEEEEE
Confidence 468899999999998652 3445554
No 47
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=71.81 E-value=1.7 Score=37.29 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=43.5
Q ss_pred CeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC----------------CCcceEEEccCCCCCCCCCCcceEEE
Q 041261 47 PFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI----------------GWQPYYFACDERGGLHWRDGRMKFMV 110 (119)
Q Consensus 47 ~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~----------------~~G~~YFiCg~~~g~HC~~G~mKl~V 110 (119)
-++-|-.+.|.=-.. ++ ...++.+-+-++.-.|.. .+|.|||..+.. .-|++|+.||.|
T Consensus 414 ~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 488 (491)
T 3l6w_A 414 VVKRGTKIMFMSVDE--AV-TTPMLNLGSYTAMFKCKVPPFSFHAFELGKMYSVESGDYFMTASTT--ELCNDNNLRIHV 488 (491)
T ss_pred EeecCCEEEEEeccc--ch-hhHHHhhhhhhhhhccccCCCccCcccccceEecCCCceEecCChH--HHHhCCceeEEE
Confidence 456688888843322 12 234444446667788987 999999999998 789999669988
Q ss_pred Ee
Q 041261 111 LP 112 (119)
Q Consensus 111 ~p 112 (119)
.+
T Consensus 489 ~~ 490 (491)
T 3l6w_A 489 HV 490 (491)
T ss_pred Ee
Confidence 64
No 48
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=64.00 E-value=10 Score=33.65 Aligned_cols=63 Identities=8% Similarity=-0.068 Sum_probs=37.6
Q ss_pred CCeEeCcEEEEEeCCCCC-CccccceEEecCcccCcccCC-----------CCcceEEEccCCCCCCCCCC--cceEEEE
Q 041261 46 APFYVNDVLVFKYDPPND-TVFPHSEYLLPNLWSYLRCDI-----------GWQPYYFACDERGGLHWRDG--RMKFMVL 111 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~-~~~~h~V~~V~~~~~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G--~mKl~V~ 111 (119)
-++.+||.+.|...+... .-..|+...- +..-=..... +||.|+|.|... |-.+ .|+-.|.
T Consensus 560 I~VP~GdtVrfiLTN~D~veDViHSF~IP-slGIK~DaiPGrtnsvtFtadkPGvY~y~CSE~----CGa~Hs~M~G~Vi 634 (638)
T 3sbq_A 560 FTVKQGDEVTVTITNIDQIEDVSHGFVVV-NHGVSMEISPQQTSSITFVADKPGLHWYYCSWF----CHALHMEMVGRMM 634 (638)
T ss_dssp EEEETTCEEEEEEEECCCSTTCCEEEEET-TTTEEEEECTTCEEEEEEECCSCEEEEEECCSC----CSTTCTTCEEEEE
T ss_pred EEEecCceeEEEEecCCcCCCceeeeEec-CCCceeeeCCCCeEEEEEEcCCCEEEEEECCCc----CCCCcccceEEEE
Confidence 467889999998765210 0025776542 3210000111 999999999975 7665 4777776
Q ss_pred ec
Q 041261 112 PL 113 (119)
Q Consensus 112 p~ 113 (119)
+-
T Consensus 635 VE 636 (638)
T 3sbq_A 635 VE 636 (638)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 49
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=60.42 E-value=3.6 Score=27.34 Aligned_cols=17 Identities=29% Similarity=0.592 Sum_probs=12.7
Q ss_pred CCCeEeCcEEEEE-eCCC
Q 041261 45 NAPFYVNDVLVFK-YDPP 61 (119)
Q Consensus 45 ~k~F~vGD~LvF~-Y~~~ 61 (119)
++.|++||.|+|. |+.+
T Consensus 35 Dr~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 35 DRNFQVGDILILEEYMNG 52 (83)
T ss_dssp CSCCCTTCEEEEEEEETT
T ss_pred ccCCCCCCEEEEEEccCC
Confidence 3569999999994 6533
No 50
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=58.24 E-value=17 Score=31.57 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=36.9
Q ss_pred CCeEeCcEEEEEeCCCCC-CccccceEEecCcccCcccCC-------------CCcceEEEccCCC-CCCCCCCcceEEE
Q 041261 46 APFYVNDVLVFKYDPPND-TVFPHSEYLLPNLWSYLRCDI-------------GWQPYYFACDERG-GLHWRDGRMKFMV 110 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~-~~~~h~V~~V~~~~~Y~~C~~-------------~~G~~YFiCg~~~-g~HC~~G~mKl~V 110 (119)
-++++||.+.|...+... .-..|++..- +.. .+ +.. +||.|+|.|...- ..| .| |+..|
T Consensus 515 I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip-~~g-v~-~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--~g-M~G~I 588 (595)
T 1fwx_A 515 FTVKEGDEVTVIVTNLDEIDDLTHGFTMG-NYG-VA-MEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH--ME-MRGRM 588 (595)
T ss_dssp EEEETTCEEEEEEEECCCSTTCCEEEEET-TTT-EE-EEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--TT-CEEEE
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeEEec-CCC-cc-eeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--cC-CEEEE
Confidence 356779999998765311 1124776542 211 10 111 8999999998420 034 37 88887
Q ss_pred EecC
Q 041261 111 LPLL 114 (119)
Q Consensus 111 ~p~~ 114 (119)
.+.+
T Consensus 589 iV~p 592 (595)
T 1fwx_A 589 LVEP 592 (595)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7654
No 51
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=49.76 E-value=7.3 Score=27.66 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=16.4
Q ss_pred hhhcCCCCeEeCcEEEEEeCCC
Q 041261 40 VWAFQNAPFYVNDVLVFKYDPP 61 (119)
Q Consensus 40 ~WA~~~k~F~vGD~LvF~Y~~~ 61 (119)
.-+. ...+++||+++|.+...
T Consensus 110 ~Fv~-dn~L~~GD~cvFeli~~ 130 (146)
T 4i1k_A 110 EFTL-ENNLGEGDVCVFELLRT 130 (146)
T ss_dssp HHHH-HTTCCTTCEEEEEECSS
T ss_pred HHHH-HcCCCCCCEEEEEEecC
Confidence 3344 46899999999999865
No 52
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=38.35 E-value=11 Score=26.10 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=10.2
Q ss_pred CCeEeCcEEEEE
Q 041261 46 APFYVNDVLVFK 57 (119)
Q Consensus 46 k~F~vGD~LvF~ 57 (119)
+.+++||.|+|+
T Consensus 33 ~~i~vGD~I~f~ 44 (113)
T 1xne_A 33 KDIKRGDKIIFN 44 (113)
T ss_dssp TTCCTTCEEEET
T ss_pred hccCCCCEEEEc
Confidence 478999999993
No 53
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=35.27 E-value=29 Score=26.36 Aligned_cols=59 Identities=29% Similarity=0.330 Sum_probs=37.8
Q ss_pred CeEeCcEEEEEeCCCCCCccccceEEecCcc----------cCcccCC-CCcceEEEccCCCCCCCCCC--cceEEEEec
Q 041261 47 PFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW----------SYLRCDI-GWQPYYFACDERGGLHWRDG--RMKFMVLPL 113 (119)
Q Consensus 47 ~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~----------~Y~~C~~-~~G~~YFiCg~~~g~HC~~G--~mKl~V~p~ 113 (119)
.+.+|+.+.|.-.+. | | .|+-.+ |... ..-.-.. ++|.||..|.. .|-.| .|++.|.+.
T Consensus 44 ~lP~g~~V~~~lTS~-D-V-iHSF~I-P~lgvK~daiPGr~n~l~~~~~~pG~y~g~CsE----~CG~~Hs~M~~~v~vv 115 (205)
T 1cyx_A 44 AFPANTPVYFKVTSN-S-V-MHSFFI-PRLGSQIYAMAGMQTRLHLIANEPGTYDGICAE----ICGPGHSGMKFKAIAT 115 (205)
T ss_dssp EEETTSCEEEEEEES-S-S-CEEEEE-GGGTEEEEECTTCCEEEEECCSSSEEEEEEECS----CCSTTSTTCCEEEEEE
T ss_pred EEeCCCEEEEEEecC-C-c-eeeEEe-cccCcEEEecCCceEEEEEEeCCCeEEEEEccc----ccccchhhceEEEEEE
Confidence 556799999988864 3 2 355333 2211 1000011 99999999996 48777 799988876
No 54
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=33.34 E-value=12 Score=25.72 Aligned_cols=11 Identities=18% Similarity=0.528 Sum_probs=9.8
Q ss_pred CCeEeCcEEEE
Q 041261 46 APFYVNDVLVF 56 (119)
Q Consensus 46 k~F~vGD~LvF 56 (119)
+.+++||.|+|
T Consensus 32 ~~ikvGD~I~f 42 (109)
T 2z0t_A 32 RQIKPGDIIIF 42 (109)
T ss_dssp GGCCTTCEEEE
T ss_pred hcCCCCCEEEE
Confidence 37899999999
No 55
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=30.87 E-value=31 Score=22.89 Aligned_cols=34 Identities=6% Similarity=0.284 Sum_probs=25.5
Q ss_pred CcEEEecCCCCCCCCCCchhhh-cCCCCeEeCcEEEEE
Q 041261 21 PNKIIVGSSDNWHFGFNYSVWA-FQNAPFYVNDVLVFK 57 (119)
Q Consensus 21 a~~~~VGg~~gW~~~~nY~~WA-~~~k~F~vGD~LvF~ 57 (119)
....++||+.| ...++.|. +....|..||++.++
T Consensus 36 ~~~~~l~DeTG---~I~~t~W~~~~~~~~~~G~~V~i~ 70 (109)
T 2kbn_A 36 SQVGLLGDETG---IIKFTIWKNAELPLLEQGESYLLR 70 (109)
T ss_dssp EEEEEEECTTC---CEEEEEEGGGCCCCCCTTCEEEEE
T ss_pred EEEEEEECCCC---eEEEEEECcccccccCCCCEEEEE
Confidence 34578999988 34567786 334689999999997
No 56
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=30.72 E-value=26 Score=27.92 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=38.1
Q ss_pred CeEeCcEEEEEeCCCCCCccccceEEecCcccCcccCC-----------CCcceEEEccCCCCCCCCCC--cceEEEEec
Q 041261 47 PFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCDI-----------GWQPYYFACDERGGLHWRDG--RMKFMVLPL 113 (119)
Q Consensus 47 ~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~~-----------~~G~~YFiCg~~~g~HC~~G--~mKl~V~p~ 113 (119)
.+.+|+.+.|.-.+. | | -|+-.. |+..-=....+ +||.||..|.. .|-.| .|++.|.+.
T Consensus 192 vlP~g~~V~~~ltS~-D-V-iHsf~i-P~lg~k~daiPG~~n~~~~~~~~~G~y~g~CsE----~CG~~Hs~M~~~v~vv 263 (298)
T 3hb3_B 192 VVPVGKKVLVQVTAT-D-V-IHAWTI-PAFAVKQDAVPGRIAQLWFSVDQEGVYFGQCSE----LCGINHAYMPIVVKAV 263 (298)
T ss_dssp EEESSSEEEEEEEES-S-S-CEEEEE-GGGTEEEEECTTCCEEEEEECSSSEEEEECCCS----CCSTTTTSCCEEEEEE
T ss_pred EEEcCCEEEEEEEeC-C-c-cceeeE-cccCceEEecCCceEEEEEEeCCCEEEEEEccc----ccCcCccCCeeEEEEE
Confidence 345788899988864 3 2 465333 22211011111 99999999996 48777 799988876
Q ss_pred C
Q 041261 114 L 114 (119)
Q Consensus 114 ~ 114 (119)
+
T Consensus 264 s 264 (298)
T 3hb3_B 264 S 264 (298)
T ss_dssp C
T ss_pred c
Confidence 5
No 57
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=30.72 E-value=13 Score=26.46 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=27.7
Q ss_pred CCcEEEecCCCCCCCCCCchhhhcCCCCeEeCcEEEEEeCCC
Q 041261 20 GPNKIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPP 61 (119)
Q Consensus 20 ~a~~~~VGg~~gW~~~~nY~~WA~~~k~F~vGD~LvF~Y~~~ 61 (119)
..+.++|=-..||...+.|.. +..++..||+|.|+|..+
T Consensus 77 ~gK~V~~~S~AgY~S~V~y~~---~svtl~rG~t~~F~y~~g 115 (126)
T 4dny_A 77 EGKMVRFVSSAGYSSTVFYGD---RKVTLSVGNTLLFKYVNG 115 (126)
T ss_dssp TTCEEEEEEECSSCEEEEETT---EEEEECTTCEEEEEEETT
T ss_pred CCCEEEEEEecCccEEEEECC---cEEEecCCCEEEEEEcCC
Confidence 456777766777877666653 235778899999999654
No 58
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=29.27 E-value=34 Score=25.95 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=22.1
Q ss_pred CCcceEEEccCCCCCCCCCC--cceEEEEecC
Q 041261 85 GWQPYYFACDERGGLHWRDG--RMKFMVLPLL 114 (119)
Q Consensus 85 ~~G~~YFiCg~~~g~HC~~G--~mKl~V~p~~ 114 (119)
+||.||..|.. -|-.| .|.+.|.+.+
T Consensus 188 ~~G~y~g~Cse----~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 188 RPGLYYGQCSE----ICGSNHSFMPIVLELVP 215 (227)
T ss_dssp SCEEEEECCCS----CCSTTGGGCCEEEEEEC
T ss_pred CcEEEEEEehh----hcccccccCeEEEEEEc
Confidence 99999999996 49888 8998888764
No 59
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=28.51 E-value=35 Score=26.44 Aligned_cols=60 Identities=22% Similarity=0.153 Sum_probs=38.0
Q ss_pred CeEeCcEEEEEeCCCCCCccccceEEecCcc----------cCcccCC-CCcceEEEccCCCCCCCCCC--cceEEEEec
Q 041261 47 PFYVNDVLVFKYDPPNDTVFPHSEYLLPNLW----------SYLRCDI-GWQPYYFACDERGGLHWRDG--RMKFMVLPL 113 (119)
Q Consensus 47 ~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~----------~Y~~C~~-~~G~~YFiCg~~~g~HC~~G--~mKl~V~p~ 113 (119)
.+.+|+.+.|.-.+. | | .|+-.. |+.. ..-.-.. +||.||..|+.- |-.| .|++.|.+.
T Consensus 174 ~lP~g~~v~~~~tS~-D-V-iHsf~i-p~l~~k~da~PG~~n~~~~~~~~~G~y~g~Cse~----CG~~H~~M~~~v~vv 245 (262)
T 2gsm_B 174 VVPVNKTVVVQVTGA-D-V-IHSWTV-PAFGVKQDAVPGRLAQLWFRAEREGIFFGQCSEL----CGISHAYMPITVKVV 245 (262)
T ss_dssp EEETTSEEEEEEEES-S-S-CEEEEE-GGGTEEEEECBTCCEEEEEECCSCEEEEECCCSC----CSTTGGGCCEEEEEE
T ss_pred EEecCCEEEEEEEEC-c-c-cceeee-cccCceEEecCCceeEEEEecCCcEEEEEEChHh----cccCcccCeEEEEEE
Confidence 457799999988864 3 2 355332 2211 1000011 999999999964 9888 899888766
Q ss_pred C
Q 041261 114 L 114 (119)
Q Consensus 114 ~ 114 (119)
+
T Consensus 246 ~ 246 (262)
T 2gsm_B 246 S 246 (262)
T ss_dssp C
T ss_pred c
Confidence 4
No 60
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=26.98 E-value=19 Score=23.85 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=23.8
Q ss_pred EEEecCCCCCCCCCCchhhhcCCCCeEeCcEEEEE
Q 041261 23 KIIVGSSDNWHFGFNYSVWAFQNAPFYVNDVLVFK 57 (119)
Q Consensus 23 ~~~VGg~~gW~~~~nY~~WA~~~k~F~vGD~LvF~ 57 (119)
..+|||+.| ....+.|.. + |.+||++.+.
T Consensus 41 ~~~l~DeTG---~I~~tlW~~--~-l~~Gdvv~i~ 69 (106)
T 2k75_A 41 QGYIEDDTA---RIRISSFGK--Q-LQDSDVVRID 69 (106)
T ss_dssp EEEEECSSC---EEEEEEESS--C-CCTTEEEEEE
T ss_pred EEEEEcCCC---eEEEEEEcC--c-cCCCCEEEEE
Confidence 588999988 356788875 3 9999999998
No 61
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=23.29 E-value=28 Score=22.07 Aligned_cols=16 Identities=19% Similarity=0.023 Sum_probs=13.6
Q ss_pred CCeEeCcEEEEEeCCC
Q 041261 46 APFYVNDVLVFKYDPP 61 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~ 61 (119)
.+|.+||.|+|--+.+
T Consensus 28 N~f~~GD~iEi~~P~g 43 (89)
T 4he6_A 28 NHFRPGDEVEFFGPEI 43 (89)
T ss_dssp SCBCTTCEEEEESTTS
T ss_pred CCcCCCCEEEEEcCCC
Confidence 4999999999987655
No 62
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=21.90 E-value=40 Score=21.45 Aligned_cols=16 Identities=13% Similarity=0.302 Sum_probs=13.9
Q ss_pred CCeEeCcEEEEEeCCC
Q 041261 46 APFYVNDVLVFKYDPP 61 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~ 61 (119)
..|++||.+.|.+...
T Consensus 52 ~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 52 SEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp CCCCTTCEEEEEEEEE
T ss_pred hcCCCCCEEEEEEEEe
Confidence 5899999999999754
No 63
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=20.91 E-value=43 Score=21.74 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=16.4
Q ss_pred hhhhcCCCCeEeCcEEEEEeCCC
Q 041261 39 SVWAFQNAPFYVNDVLVFKYDPP 61 (119)
Q Consensus 39 ~~WA~~~k~F~vGD~LvF~Y~~~ 61 (119)
.+.+. -..|++||.+.|.+...
T Consensus 54 ~~~~~-l~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 54 TPQTK-MSEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp CTTCE-ECCCCTTCEEEEEEEEE
T ss_pred CChhh-hhcCCCCCEEEEEEEEe
Confidence 34443 35899999999999754
No 64
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=20.13 E-value=46 Score=26.59 Aligned_cols=60 Identities=23% Similarity=0.199 Sum_probs=39.3
Q ss_pred CCeEeCcEEEEEeCCCCCCccccceEEecCcccCcccC----------C-CCcceEEEccCCCCCCCCCC--cceEEEEe
Q 041261 46 APFYVNDVLVFKYDPPNDTVFPHSEYLLPNLWSYLRCD----------I-GWQPYYFACDERGGLHWRDG--RMKFMVLP 112 (119)
Q Consensus 46 k~F~vGD~LvF~Y~~~~~~~~~h~V~~V~~~~~Y~~C~----------~-~~G~~YFiCg~~~g~HC~~G--~mKl~V~p 112 (119)
-.+.+|..+.|.-.+. | | -|+-.. |+..-=.... . ++|.||..|.. .|-.| .|++.|.+
T Consensus 153 l~lP~g~~V~~~lTS~-D-V-iHsf~I-P~lg~k~DaiPGr~n~~~~~~~~~G~y~g~CsE----~CG~~Hs~M~~~v~v 224 (315)
T 1fft_B 153 IAFPANTPVYFKVTSN-S-V-MNSFFI-PRLGSQIYAMAGMQTRLHLIANEPGTYDGISAS----YSGPGFSGMKFKAIA 224 (315)
T ss_dssp CCCCSSSEEEEEECBS-S-S-CEEEEE-GGGTEEEEECBTSCEEEEEECCSCBCCEEBCCS----CCSTTTTTCCEECCB
T ss_pred EEEeCCCEEEEEEEeC-C-c-cceeee-cccCcEEeecCCcceeeEEecCCCeEEEEeccc----cchhhHHhccceEEE
Confidence 4678899999999875 3 2 355332 2211100011 1 99999999995 48777 79998887
Q ss_pred c
Q 041261 113 L 113 (119)
Q Consensus 113 ~ 113 (119)
.
T Consensus 225 v 225 (315)
T 1fft_B 225 T 225 (315)
T ss_dssp C
T ss_pred e
Confidence 6
Done!