Query 041263
Match_columns 318
No_of_seqs 153 out of 1512
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:23:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 4.4E-65 9.5E-70 450.8 28.2 257 14-291 8-265 (280)
2 KOG1577 Aldo/keto reductase fa 100.0 4.9E-63 1.1E-67 437.8 27.8 278 12-291 6-286 (300)
3 PRK11172 dkgB 2,5-diketo-D-glu 100.0 9.3E-58 2E-62 411.2 28.9 252 18-291 1-253 (267)
4 COG0667 Tas Predicted oxidored 100.0 1.1E-57 2.3E-62 418.2 27.7 261 10-290 1-309 (316)
5 KOG1575 Voltage-gated shaker-l 100.0 5.9E-57 1.3E-61 406.1 26.9 273 7-297 9-332 (336)
6 PRK09912 L-glyceraldehyde 3-ph 100.0 6.1E-56 1.3E-60 413.2 28.9 274 1-291 4-334 (346)
7 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.2E-55 2.6E-60 398.8 28.3 254 14-290 9-262 (275)
8 TIGR01293 Kv_beta voltage-depe 100.0 1E-55 2.2E-60 407.4 26.0 257 14-288 5-316 (317)
9 PRK10625 tas putative aldo-ket 100.0 7.4E-55 1.6E-59 406.3 27.5 276 10-290 1-339 (346)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 2.9E-53 6.2E-58 385.6 28.2 257 14-288 5-285 (285)
11 PLN02587 L-galactose dehydroge 100.0 8.2E-53 1.8E-57 387.7 26.1 262 14-290 5-300 (314)
12 PRK10376 putative oxidoreducta 100.0 7E-52 1.5E-56 377.2 27.4 262 1-290 1-288 (290)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 2.2E-52 4.8E-57 379.4 22.4 250 22-289 1-282 (283)
14 PRK14863 bifunctional regulato 100.0 7.2E-50 1.6E-54 363.7 20.3 250 17-289 2-281 (292)
15 COG4989 Predicted oxidoreducta 100.0 4.6E-49 1E-53 334.9 19.3 263 10-290 1-293 (298)
16 COG1453 Predicted oxidoreducta 100.0 3.3E-48 7.1E-53 346.9 21.2 276 10-307 1-309 (391)
17 KOG1576 Predicted oxidoreducta 100.0 6.1E-45 1.3E-49 311.9 20.0 266 9-290 21-321 (342)
18 KOG3023 Glutamate-cysteine lig 98.4 8E-07 1.7E-11 76.3 7.7 137 76-212 73-228 (285)
19 PF07021 MetW: Methionine bios 89.1 2.6 5.7E-05 35.8 8.1 107 95-217 59-172 (193)
20 TIGR00381 cdhD CO dehydrogenas 85.8 24 0.00051 33.4 13.0 127 94-243 128-270 (389)
21 PRK08392 hypothetical protein; 84.2 26 0.00057 30.2 18.6 184 33-244 14-209 (215)
22 PRK10558 alpha-dehydro-beta-de 84.1 12 0.00026 33.4 10.1 68 146-214 9-79 (256)
23 PRK08609 hypothetical protein; 83.1 54 0.0012 32.9 17.5 184 33-244 349-553 (570)
24 COG1748 LYS9 Saccharopine dehy 82.8 8.6 0.00019 36.5 9.0 81 31-123 77-159 (389)
25 PRK10128 2-keto-3-deoxy-L-rham 82.7 17 0.00036 32.8 10.4 102 146-275 8-114 (267)
26 PRK04452 acetyl-CoA decarbonyl 81.6 15 0.00033 33.9 9.9 116 103-243 84-205 (319)
27 TIGR00190 thiC thiamine biosyn 81.3 51 0.0011 31.4 15.4 153 30-218 74-230 (423)
28 TIGR03239 GarL 2-dehydro-3-deo 79.4 20 0.00044 31.8 9.8 67 147-214 3-72 (249)
29 cd03316 MR_like Mandelate race 79.0 55 0.0012 30.4 14.4 149 31-212 139-299 (357)
30 COG0761 lytB 4-Hydroxy-3-methy 75.5 14 0.00031 33.4 7.5 119 142-270 144-277 (294)
31 TIGR00216 ispH_lytB (E)-4-hydr 72.9 20 0.00044 32.5 8.0 115 145-269 145-272 (280)
32 PRK07535 methyltetrahydrofolat 72.7 45 0.00098 29.8 10.2 100 94-212 25-124 (261)
33 PF03102 NeuB: NeuB family; I 72.6 20 0.00044 31.7 7.8 115 29-172 52-188 (241)
34 PRK13796 GTPase YqeH; Provisio 72.0 53 0.0012 30.9 11.0 121 30-173 54-180 (365)
35 PRK13352 thiamine biosynthesis 71.6 97 0.0021 29.7 15.3 154 30-219 74-234 (431)
36 PRK07945 hypothetical protein; 71.6 87 0.0019 29.1 19.7 24 32-55 110-133 (335)
37 COG2089 SpsE Sialic acid synth 71.4 68 0.0015 29.7 10.9 116 30-174 87-224 (347)
38 PRK06361 hypothetical protein; 70.9 66 0.0014 27.4 15.5 183 33-248 10-200 (212)
39 cd07944 DRE_TIM_HOA_like 4-hyd 70.1 63 0.0014 29.0 10.6 104 95-210 20-128 (266)
40 cd03319 L-Ala-DL-Glu_epimerase 69.8 89 0.0019 28.5 13.8 149 31-213 134-288 (316)
41 PRK10550 tRNA-dihydrouridine s 69.5 93 0.002 28.6 12.7 145 22-186 64-224 (312)
42 PRK00912 ribonuclease P protei 69.4 77 0.0017 27.7 12.1 171 32-245 15-203 (237)
43 PRK12360 4-hydroxy-3-methylbut 69.2 24 0.00051 32.1 7.6 113 147-269 150-273 (281)
44 COG0159 TrpA Tryptophan syntha 67.7 93 0.002 28.0 11.4 139 138-288 76-243 (265)
45 COG1140 NarY Nitrate reductase 67.5 3.4 7.3E-05 38.6 1.8 53 153-206 263-317 (513)
46 TIGR03700 mena_SCO4494 putativ 66.9 75 0.0016 29.7 10.8 136 92-269 80-222 (351)
47 PRK01045 ispH 4-hydroxy-3-meth 66.2 40 0.00087 30.9 8.5 115 145-269 145-274 (298)
48 PRK10415 tRNA-dihydrouridine s 65.8 1.1E+02 0.0024 28.2 12.7 138 27-187 71-225 (321)
49 TIGR02311 HpaI 2,4-dihydroxyhe 64.2 79 0.0017 28.0 9.9 100 147-275 3-108 (249)
50 TIGR00737 nifR3_yhdG putative 64.2 1.2E+02 0.0026 27.9 13.9 143 23-188 65-224 (319)
51 TIGR02026 BchE magnesium-proto 63.4 1E+02 0.0023 30.3 11.5 124 138-271 222-360 (497)
52 PF06506 PrpR_N: Propionate ca 63.4 13 0.00029 30.9 4.6 71 138-211 61-132 (176)
53 TIGR00735 hisF imidazoleglycer 62.9 1.1E+02 0.0024 27.1 11.4 90 100-207 160-253 (254)
54 TIGR01496 DHPS dihydropteroate 62.0 1E+02 0.0023 27.4 10.3 63 143-211 63-125 (257)
55 cd01965 Nitrogenase_MoFe_beta_ 59.8 1.7E+02 0.0036 28.1 14.1 115 55-182 62-187 (428)
56 COG4943 Predicted signal trans 59.3 65 0.0014 31.5 8.7 128 60-211 342-478 (524)
57 cd03174 DRE_TIM_metallolyase D 59.1 63 0.0014 28.4 8.5 100 95-211 19-135 (265)
58 cd02801 DUS_like_FMN Dihydrour 59.0 1.2E+02 0.0025 26.1 10.3 133 30-186 64-213 (231)
59 PRK07094 biotin synthase; Prov 58.1 1.4E+02 0.003 27.3 10.8 120 138-271 70-202 (323)
60 COG3653 N-acyl-D-aspartate/D-g 57.3 1.9E+02 0.0042 28.0 14.3 46 225-271 382-433 (579)
61 PF02401 LYTB: LytB protein; 56.4 18 0.0004 32.7 4.5 115 146-270 145-274 (281)
62 cd00740 MeTr MeTr subgroup of 54.6 1.6E+02 0.0034 26.2 10.1 103 92-213 24-128 (252)
63 PRK14461 ribosomal RNA large s 54.6 1.2E+02 0.0027 28.7 9.7 143 58-215 183-352 (371)
64 COG0159 TrpA Tryptophan syntha 53.7 1.7E+02 0.0037 26.3 11.9 18 254-271 228-245 (265)
65 cd00423 Pterin_binding Pterin 53.2 1.6E+02 0.0036 26.0 12.6 107 92-213 22-129 (258)
66 PF11242 DUF2774: Protein of u 53.0 20 0.00043 24.4 3.0 23 229-251 15-37 (63)
67 PRK00087 4-hydroxy-3-methylbut 52.6 50 0.0011 33.7 7.4 114 146-269 146-270 (647)
68 PRK05692 hydroxymethylglutaryl 52.4 1E+02 0.0022 28.0 8.7 99 95-209 26-138 (287)
69 KOG0369 Pyruvate carboxylase [ 51.8 1E+02 0.0022 31.6 8.9 146 33-217 43-197 (1176)
70 PRK13958 N-(5'-phosphoribosyl) 51.6 72 0.0016 27.4 7.3 78 103-202 16-95 (207)
71 cd01822 Lysophospholipase_L1_l 51.5 1.1E+02 0.0025 24.5 8.4 91 153-243 36-140 (177)
72 cd04740 DHOD_1B_like Dihydroor 51.2 1.9E+02 0.0041 26.1 14.6 143 30-189 99-263 (296)
73 COG0635 HemN Coproporphyrinoge 51.1 77 0.0017 30.5 8.0 70 93-166 203-276 (416)
74 cd01973 Nitrogenase_VFe_beta_l 50.8 2.5E+02 0.0053 27.4 15.1 112 54-181 66-192 (454)
75 PRK10528 multifunctional acyl- 50.4 1.4E+02 0.003 24.9 8.8 93 150-243 40-147 (191)
76 cd07943 DRE_TIM_HOA 4-hydroxy- 49.9 1.4E+02 0.003 26.5 9.2 105 94-210 21-131 (263)
77 COG2200 Rtn c-di-GMP phosphodi 49.8 1.2E+02 0.0027 26.8 8.7 151 36-212 52-214 (256)
78 PRK09613 thiH thiamine biosynt 49.7 52 0.0011 32.2 6.7 106 92-213 116-241 (469)
79 COG2069 CdhD CO dehydrogenase/ 49.2 2.1E+02 0.0046 26.2 11.1 99 103-215 159-262 (403)
80 COG1149 MinD superfamily P-loo 48.3 37 0.0008 30.6 4.9 49 164-214 201-249 (284)
81 cd04734 OYE_like_3_FMN Old yel 48.1 2.3E+02 0.0051 26.3 12.8 98 77-178 206-309 (343)
82 COG2185 Sbm Methylmalonyl-CoA 48.0 99 0.0022 25.0 6.9 72 156-238 17-91 (143)
83 PRK11858 aksA trans-homoaconit 47.7 2.5E+02 0.0054 26.6 13.3 224 17-285 129-367 (378)
84 cd03315 MLE_like Muconate lact 47.3 2E+02 0.0044 25.4 13.4 151 31-214 85-241 (265)
85 PLN02746 hydroxymethylglutaryl 46.7 2.5E+02 0.0054 26.3 10.5 99 94-210 67-181 (347)
86 TIGR00742 yjbN tRNA dihydrouri 46.1 2.4E+02 0.0053 26.0 12.8 149 23-187 57-224 (318)
87 cd00308 enolase_like Enolase-s 45.4 1.4E+02 0.003 25.8 8.3 70 144-215 134-207 (229)
88 COG1099 Predicted metal-depend 45.3 1.9E+02 0.0042 25.4 8.6 91 149-246 58-162 (254)
89 PLN02489 homocysteine S-methyl 45.0 2.6E+02 0.0057 26.0 18.7 169 77-274 130-332 (335)
90 TIGR02932 vnfK_nitrog V-contai 44.9 3.1E+02 0.0066 26.8 14.2 116 54-182 69-197 (457)
91 cd03322 rpsA The starvation se 44.9 64 0.0014 30.2 6.4 69 143-213 202-274 (361)
92 COG4130 Predicted sugar epimer 44.6 1.1E+02 0.0023 26.7 6.9 75 165-239 50-136 (272)
93 COG1751 Uncharacterized conser 44.0 1.8E+02 0.0039 23.9 10.6 104 138-254 10-124 (186)
94 PRK05283 deoxyribose-phosphate 43.3 1E+02 0.0022 27.6 7.0 78 29-113 142-227 (257)
95 PRK00730 rnpA ribonuclease P; 42.6 88 0.0019 25.1 5.9 63 76-153 46-110 (138)
96 PLN02428 lipoic acid synthase 42.3 3E+02 0.0064 25.9 13.1 167 30-214 130-324 (349)
97 TIGR00423 radical SAM domain p 42.2 2.7E+02 0.0058 25.4 10.8 138 91-270 36-180 (309)
98 PF01207 Dus: Dihydrouridine s 42.1 1.2E+02 0.0025 27.9 7.5 135 21-177 54-206 (309)
99 PRK05414 urocanate hydratase; 41.6 88 0.0019 30.8 6.6 128 37-187 116-267 (556)
100 PRK03031 rnpA ribonuclease P; 41.2 1E+02 0.0022 24.0 6.1 65 76-153 47-114 (122)
101 cd01320 ADA Adenosine deaminas 41.1 2.8E+02 0.006 25.2 15.7 125 140-285 172-303 (325)
102 PRK14462 ribosomal RNA large s 41.1 3E+02 0.0065 25.9 10.1 142 58-215 175-338 (356)
103 PF14871 GHL6: Hypothetical gl 41.1 99 0.0022 24.5 6.0 21 194-214 47-67 (132)
104 PRK08195 4-hyroxy-2-oxovalerat 41.0 3E+02 0.0065 25.6 11.7 35 14-53 11-45 (337)
105 TIGR01228 hutU urocanate hydra 41.0 86 0.0019 30.7 6.5 128 37-187 107-258 (545)
106 TIGR00126 deoC deoxyribose-pho 40.9 62 0.0013 28.0 5.2 75 29-111 128-205 (211)
107 PRK08776 cystathionine gamma-s 40.7 3.3E+02 0.0072 25.9 11.1 74 141-215 110-186 (405)
108 TIGR01579 MiaB-like-C MiaB-lik 40.4 1.9E+02 0.0042 27.5 9.1 126 137-272 166-313 (414)
109 cd00405 PRAI Phosphoribosylant 40.2 2.3E+02 0.0049 23.9 10.2 46 102-168 67-112 (203)
110 PRK09454 ugpQ cytoplasmic glyc 40.2 2.6E+02 0.0055 24.5 14.1 22 31-52 20-41 (249)
111 COG2987 HutU Urocanate hydrata 40.2 2.2E+02 0.0048 27.7 8.9 208 59-310 150-377 (561)
112 COG0820 Predicted Fe-S-cluster 39.9 2.3E+02 0.0051 26.5 9.0 97 115-215 216-330 (349)
113 PRK04390 rnpA ribonuclease P; 39.8 1.2E+02 0.0026 23.6 6.2 65 76-153 44-110 (120)
114 COG0042 tRNA-dihydrouridine sy 39.6 3.1E+02 0.0067 25.3 12.1 143 23-186 69-228 (323)
115 PF02679 ComA: (2R)-phospho-3- 39.5 1.9E+02 0.0041 25.7 8.0 79 32-120 83-169 (244)
116 PRK01222 N-(5'-phosphoribosyl) 39.5 1.3E+02 0.0028 25.9 7.0 83 104-208 19-104 (210)
117 PF00220 Hormone_4: Neurohypop 39.2 16 0.00036 15.0 0.6 9 297-305 1-9 (9)
118 TIGR00676 fadh2 5,10-methylene 39.2 2.8E+02 0.0062 24.8 15.2 151 35-207 17-186 (272)
119 TIGR02329 propionate_PrpR prop 38.7 1.7E+02 0.0036 29.2 8.5 71 139-212 82-153 (526)
120 PF00682 HMGL-like: HMGL-like 38.7 2.6E+02 0.0056 24.1 10.2 96 94-208 13-125 (237)
121 PF07725 LRR_3: Leucine Rich R 38.4 15 0.00032 19.1 0.6 14 304-317 6-19 (20)
122 TIGR02534 mucon_cyclo muconate 38.3 1E+02 0.0023 28.8 6.8 65 144-210 227-295 (368)
123 cd03318 MLE Muconate Lactonizi 38.1 70 0.0015 29.9 5.5 15 195-209 281-295 (365)
124 TIGR00048 radical SAM enzyme, 37.7 2.7E+02 0.0058 26.2 9.3 98 115-215 219-333 (355)
125 COG3623 SgaU Putative L-xylulo 37.6 48 0.001 29.2 3.8 73 14-86 64-155 (287)
126 PRK00499 rnpA ribonuclease P; 37.2 1.3E+02 0.0029 23.0 6.1 64 76-153 38-104 (114)
127 PF00809 Pterin_bind: Pterin b 37.1 1.5E+02 0.0032 25.5 7.0 90 105-213 29-125 (210)
128 PF07994 NAD_binding_5: Myo-in 37.1 63 0.0014 29.6 4.8 138 94-254 132-272 (295)
129 cd02930 DCR_FMN 2,4-dienoyl-Co 37.1 3.5E+02 0.0076 25.2 13.5 92 77-178 202-300 (353)
130 cd07948 DRE_TIM_HCS Saccharomy 37.0 3.1E+02 0.0066 24.5 9.9 96 95-211 22-132 (262)
131 COG1751 Uncharacterized conser 37.0 88 0.0019 25.7 5.0 69 34-110 15-85 (186)
132 PRK15072 bifunctional D-altron 36.9 92 0.002 29.7 6.2 68 144-213 246-317 (404)
133 PRK01492 rnpA ribonuclease P; 36.6 1.3E+02 0.0028 23.3 5.9 62 77-151 47-114 (118)
134 TIGR01278 DPOR_BchB light-inde 36.6 3.1E+02 0.0067 27.1 10.0 108 56-180 67-191 (511)
135 PRK14464 ribosomal RNA large s 36.4 2.5E+02 0.0053 26.3 8.7 78 138-215 223-317 (344)
136 cd00885 cinA Competence-damage 36.3 1.6E+02 0.0035 24.4 6.9 65 34-104 19-84 (170)
137 TIGR00289 conserved hypothetic 35.9 2.7E+02 0.0059 24.2 8.4 110 167-290 48-168 (222)
138 COG0626 MetC Cystathionine bet 35.6 2.3E+02 0.005 27.1 8.5 79 141-219 113-194 (396)
139 COG0135 TrpF Phosphoribosylant 35.3 2.9E+02 0.0064 23.8 9.1 81 105-209 19-103 (208)
140 PF03599 CdhD: CO dehydrogenas 35.2 2.8E+02 0.0061 26.4 8.9 83 111-213 69-153 (386)
141 cd03323 D-glucarate_dehydratas 35.1 2E+02 0.0044 27.3 8.2 68 144-213 250-321 (395)
142 PRK13561 putative diguanylate 35.0 2.3E+02 0.005 28.7 9.1 117 80-211 486-611 (651)
143 TIGR01928 menC_lowGC/arch o-su 34.9 96 0.0021 28.6 5.8 71 142-214 210-284 (324)
144 COG2159 Predicted metal-depend 34.8 3.5E+02 0.0076 24.5 11.1 95 104-213 55-166 (293)
145 PRK09856 fructoselysine 3-epim 34.6 3.2E+02 0.0069 24.0 10.2 15 101-115 19-33 (275)
146 COG0621 MiaB 2-methylthioadeni 34.6 2.2E+02 0.0048 27.6 8.3 80 137-216 172-265 (437)
147 PRK04820 rnpA ribonuclease P; 34.5 1.7E+02 0.0037 23.7 6.4 65 76-153 48-114 (145)
148 cd02070 corrinoid_protein_B12- 34.5 2.9E+02 0.0062 23.4 8.3 23 30-52 8-30 (201)
149 TIGR03551 F420_cofH 7,8-dideme 34.3 2.5E+02 0.0055 26.0 8.6 123 138-271 70-215 (343)
150 PF01784 NIF3: NIF3 (NGG1p int 33.9 26 0.00056 30.9 1.8 60 8-68 158-233 (241)
151 COG0773 MurC UDP-N-acetylmuram 33.5 38 0.00083 32.9 3.0 59 194-259 80-141 (459)
152 PRK14466 ribosomal RNA large s 33.3 4.1E+02 0.0089 24.9 9.6 99 114-215 210-325 (345)
153 TIGR03597 GTPase_YqeH ribosome 33.1 3E+02 0.0064 25.8 8.9 120 31-173 49-174 (360)
154 PRK14017 galactonate dehydrata 32.8 1E+02 0.0022 29.1 5.7 68 144-213 217-288 (382)
155 PRK09061 D-glutamate deacylase 32.8 4.7E+02 0.01 25.8 10.6 109 35-162 171-283 (509)
156 TIGR02370 pyl_corrinoid methyl 32.7 2.4E+02 0.0053 23.8 7.6 146 30-205 9-164 (197)
157 PRK12581 oxaloacetate decarbox 32.6 4.9E+02 0.011 25.5 16.7 156 25-205 97-263 (468)
158 PRK14459 ribosomal RNA large s 32.6 4E+02 0.0087 25.3 9.5 100 113-215 240-359 (373)
159 PRK01060 endonuclease IV; Prov 32.5 2.8E+02 0.0061 24.5 8.4 25 96-122 14-38 (281)
160 PLN02775 Probable dihydrodipic 32.3 2.4E+02 0.0053 25.6 7.7 59 99-175 67-125 (286)
161 TIGR01163 rpe ribulose-phospha 32.1 2.9E+02 0.0062 23.1 8.0 62 143-207 44-107 (210)
162 cd00408 DHDPS-like Dihydrodipi 32.0 3.7E+02 0.0079 23.9 12.2 29 29-57 14-42 (281)
163 COG0422 ThiC Thiamine biosynth 31.9 4.6E+02 0.0099 25.0 15.3 143 30-216 75-229 (432)
164 COG1038 PycA Pyruvate carboxyl 31.6 1.7E+02 0.0038 30.7 7.2 46 166-213 69-114 (1149)
165 PRK13803 bifunctional phosphor 31.6 4.2E+02 0.009 27.0 10.1 66 105-187 20-87 (610)
166 PF01175 Urocanase: Urocanase; 31.6 1.6E+02 0.0034 29.1 6.6 128 37-187 106-257 (546)
167 TIGR02026 BchE magnesium-proto 31.6 5.1E+02 0.011 25.4 12.2 68 138-205 320-392 (497)
168 cd07948 DRE_TIM_HCS Saccharomy 31.5 1.2E+02 0.0027 27.0 5.7 42 28-69 136-179 (262)
169 COG2055 Malate/L-lactate dehyd 31.4 2.3E+02 0.0049 26.6 7.5 88 91-210 6-114 (349)
170 PRK11815 tRNA-dihydrouridine s 31.2 4.3E+02 0.0093 24.4 12.5 149 23-187 67-234 (333)
171 PLN02363 phosphoribosylanthran 31.2 2.2E+02 0.0049 25.4 7.3 64 105-186 64-129 (256)
172 cd03325 D-galactonate_dehydrat 31.0 1.9E+02 0.0041 27.0 7.2 66 144-211 216-285 (352)
173 PRK02083 imidazole glycerol ph 30.9 3.7E+02 0.008 23.6 10.8 64 144-207 186-251 (253)
174 COG2805 PilT Tfp pilus assembl 30.8 3.9E+02 0.0085 24.8 8.7 80 196-275 117-222 (353)
175 TIGR01182 eda Entner-Doudoroff 30.7 2.7E+02 0.0059 23.9 7.5 109 143-272 46-168 (204)
176 cd00950 DHDPS Dihydrodipicolin 30.7 3.9E+02 0.0085 23.8 11.6 29 29-57 17-45 (284)
177 PRK00164 moaA molybdenum cofac 30.5 4.2E+02 0.0092 24.2 15.7 160 30-208 49-227 (331)
178 PRK14457 ribosomal RNA large s 30.4 4.6E+02 0.0099 24.5 15.2 150 58-215 163-330 (345)
179 PRK14465 ribosomal RNA large s 30.2 4.6E+02 0.01 24.5 10.5 99 114-215 215-329 (342)
180 CHL00076 chlB photochlorophyll 30.0 5.6E+02 0.012 25.4 13.9 140 56-214 67-248 (513)
181 COG4626 Phage terminase-like p 29.9 1.9E+02 0.0041 28.9 7.0 76 138-213 410-485 (546)
182 PRK05588 histidinol-phosphatas 29.8 3.8E+02 0.0083 23.5 11.8 80 33-121 16-103 (255)
183 COG4077 Uncharacterized protei 29.7 1.4E+02 0.0029 23.8 4.9 86 77-179 33-118 (156)
184 PRK01313 rnpA ribonuclease P; 29.7 2E+02 0.0044 22.7 6.1 63 76-152 47-113 (129)
185 cd00739 DHPS DHPS subgroup of 29.5 4.1E+02 0.0088 23.6 11.3 98 97-212 24-128 (257)
186 PF01904 DUF72: Protein of unk 29.3 2.9E+02 0.0063 24.0 7.6 68 47-122 19-96 (230)
187 PRK14463 ribosomal RNA large s 29.3 3.9E+02 0.0086 25.0 8.9 78 138-215 231-325 (349)
188 PLN02444 HMP-P synthase 29.3 6.1E+02 0.013 25.6 11.5 91 90-217 296-387 (642)
189 cd04731 HisF The cyclase subun 29.2 3.8E+02 0.0083 23.2 11.0 132 18-178 70-217 (243)
190 PF01487 DHquinase_I: Type I 3 29.1 3.7E+02 0.008 23.0 9.5 123 28-173 70-192 (224)
191 PRK10060 RNase II stability mo 29.0 6.3E+02 0.014 25.7 12.3 115 79-211 492-618 (663)
192 PRK14340 (dimethylallyl)adenos 29.0 4.8E+02 0.01 25.3 9.8 66 137-204 177-255 (445)
193 cd03770 SR_TndX_transposase Se 28.9 1.6E+02 0.0035 23.3 5.5 53 97-162 54-106 (140)
194 PF07287 DUF1446: Protein of u 28.9 1.4E+02 0.003 28.2 5.7 88 143-240 11-100 (362)
195 PF01118 Semialdhyde_dh: Semia 28.7 64 0.0014 24.8 3.0 28 30-57 74-101 (121)
196 TIGR03586 PseI pseudaminic aci 28.7 4.8E+02 0.01 24.2 10.7 111 30-169 74-206 (327)
197 TIGR01502 B_methylAsp_ase meth 28.5 5.1E+02 0.011 24.9 9.6 70 142-213 279-357 (408)
198 KOG2367 Alpha-isopropylmalate 28.4 5.8E+02 0.013 25.1 10.4 89 30-123 201-291 (560)
199 PRK15408 autoinducer 2-binding 28.4 4.7E+02 0.01 24.0 11.3 74 76-170 22-95 (336)
200 cd00959 DeoC 2-deoxyribose-5-p 28.2 1.2E+02 0.0025 25.9 4.8 77 25-109 123-202 (203)
201 PRK07003 DNA polymerase III su 28.1 2.4E+02 0.0053 29.6 7.7 90 94-205 102-196 (830)
202 TIGR00433 bioB biotin syntheta 28.1 4.3E+02 0.0094 23.5 10.1 71 138-211 62-140 (296)
203 PF00289 CPSase_L_chain: Carba 28.0 2.1E+02 0.0046 21.8 5.8 45 165-211 62-106 (110)
204 COG4152 ABC-type uncharacteriz 28.0 1.9E+02 0.0041 26.0 6.0 36 138-175 164-199 (300)
205 COG3215 PilZ Tfp pilus assembl 27.8 1.2E+02 0.0026 23.0 4.1 65 35-106 22-106 (117)
206 cd03327 MR_like_2 Mandelate ra 27.5 4.9E+02 0.011 24.0 13.8 148 30-210 119-279 (341)
207 PRK14338 (dimethylallyl)adenos 27.4 5.8E+02 0.013 24.8 10.1 66 138-204 184-262 (459)
208 PRK15424 propionate catabolism 27.2 3.6E+02 0.0078 27.0 8.7 73 138-213 91-164 (538)
209 PRK11194 ribosomal RNA large s 27.1 5.4E+02 0.012 24.3 9.7 142 58-214 172-336 (372)
210 PRK14331 (dimethylallyl)adenos 27.0 4.1E+02 0.0088 25.6 8.9 66 137-204 174-252 (437)
211 KOG1549 Cysteine desulfurase N 26.9 5.9E+02 0.013 24.7 9.8 68 143-210 144-217 (428)
212 TIGR01428 HAD_type_II 2-haloal 26.9 2.4E+02 0.0052 23.3 6.6 36 141-177 95-130 (198)
213 COG0809 QueA S-adenosylmethion 26.7 49 0.0011 30.7 2.3 65 143-213 188-258 (348)
214 PRK06256 biotin synthase; Vali 26.4 5.1E+02 0.011 23.7 9.5 72 138-210 91-168 (336)
215 PF08303 tRNA_lig_kinase: tRNA 26.4 3.6E+02 0.0078 22.5 7.1 10 62-71 15-24 (168)
216 TIGR03569 NeuB_NnaB N-acetylne 26.4 5.3E+02 0.011 24.0 10.9 114 30-169 73-207 (329)
217 KOG4175 Tryptophan synthase al 26.3 3.6E+02 0.0079 23.3 7.2 70 30-108 132-202 (268)
218 cd01821 Rhamnogalacturan_acety 26.3 3.7E+02 0.008 22.1 8.2 87 155-241 36-149 (198)
219 PF04748 Polysacc_deac_2: Dive 26.2 2.8E+02 0.0061 23.9 6.9 105 30-155 71-203 (213)
220 cd00338 Ser_Recombinase Serine 26.2 1.2E+02 0.0027 23.3 4.4 54 95-162 49-102 (137)
221 COG0327 Uncharacterized conser 26.2 1.1E+02 0.0023 27.3 4.3 36 33-69 197-232 (250)
222 cd01974 Nitrogenase_MoFe_beta 26.0 6E+02 0.013 24.4 14.1 115 54-181 65-191 (435)
223 PF10171 DUF2366: Uncharacteri 25.9 1.7E+02 0.0036 24.6 5.1 51 98-165 67-117 (173)
224 PRK14460 ribosomal RNA large s 25.6 5.6E+02 0.012 24.0 9.9 144 58-215 170-332 (354)
225 cd01981 Pchlide_reductase_B Pc 25.6 6E+02 0.013 24.3 13.2 139 57-214 68-247 (430)
226 PF01053 Cys_Met_Meta_PP: Cys/ 25.5 2.6E+02 0.0056 26.6 7.1 76 141-217 105-184 (386)
227 PF01408 GFO_IDH_MocA: Oxidore 25.5 2.9E+02 0.0062 20.6 10.4 86 146-239 15-114 (120)
228 cd01948 EAL EAL domain. This d 25.5 4.1E+02 0.0089 22.3 10.0 117 78-212 82-210 (240)
229 PRK14332 (dimethylallyl)adenos 25.5 6.3E+02 0.014 24.5 10.1 125 137-272 182-326 (449)
230 cd01968 Nitrogenase_NifE_I Nit 25.4 5.9E+02 0.013 24.2 13.8 111 54-180 66-187 (410)
231 PRK03459 rnpA ribonuclease P; 25.1 2.3E+02 0.005 22.1 5.6 64 76-153 48-114 (122)
232 PRK09413 IS2 repressor TnpA; R 25.0 95 0.0021 24.0 3.4 40 30-69 13-53 (121)
233 PRK12323 DNA polymerase III su 25.0 1.9E+02 0.004 29.9 6.1 66 94-175 107-174 (700)
234 PRK13843 conjugal transfer pro 24.8 1.1E+02 0.0024 26.2 3.9 27 138-165 50-76 (207)
235 COG2109 BtuR ATP:corrinoid ade 24.8 1.6E+02 0.0035 25.1 4.8 47 93-148 104-150 (198)
236 PRK00396 rnpA ribonuclease P; 24.8 2.6E+02 0.0056 22.2 5.8 65 76-153 46-112 (130)
237 TIGR01378 thi_PPkinase thiamin 24.7 2.3E+02 0.0049 24.2 6.0 73 176-273 34-110 (203)
238 PF09012 FeoC: FeoC like trans 24.7 1.1E+02 0.0024 21.0 3.3 27 138-164 26-52 (69)
239 cd01971 Nitrogenase_VnfN_like 24.6 6.3E+02 0.014 24.2 10.7 112 55-183 67-192 (427)
240 PRK00770 deoxyhypusine synthas 24.5 6.2E+02 0.013 24.1 10.5 145 33-214 37-198 (384)
241 PF00148 Oxidored_nitro: Nitro 24.4 5.9E+02 0.013 23.8 9.8 140 56-213 56-226 (398)
242 PRK09490 metH B12-dependent me 24.4 1E+03 0.022 26.6 18.1 91 106-213 395-489 (1229)
243 PRK13602 putative ribosomal pr 24.4 1.5E+02 0.0032 21.3 4.1 58 147-211 3-60 (82)
244 PRK01732 rnpA ribonuclease P; 24.3 2.9E+02 0.0062 21.2 5.9 64 76-152 45-110 (114)
245 TIGR02660 nifV_homocitr homoci 24.2 6E+02 0.013 23.8 12.0 92 95-209 23-131 (365)
246 PRK10551 phage resistance prot 24.1 7.1E+02 0.015 24.6 11.1 115 78-211 348-474 (518)
247 PRK11059 regulatory protein Cs 23.8 3.8E+02 0.0082 27.2 8.4 116 79-212 483-611 (640)
248 cd04724 Tryptophan_synthase_al 23.7 4.9E+02 0.011 22.8 8.1 93 139-241 12-132 (242)
249 TIGR03471 HpnJ hopanoid biosyn 23.3 6.9E+02 0.015 24.2 12.3 122 138-273 227-362 (472)
250 cd00248 Mth938-like Mth938-lik 23.2 2.8E+02 0.006 21.1 5.6 51 161-213 36-88 (109)
251 PRK00507 deoxyribose-phosphate 23.0 2.5E+02 0.0055 24.4 6.0 72 30-110 133-208 (221)
252 COG2102 Predicted ATPases of P 22.9 2.5E+02 0.0053 24.6 5.7 94 139-242 74-177 (223)
253 cd01966 Nitrogenase_NifN_1 Nit 22.9 5.7E+02 0.012 24.5 9.0 113 55-180 62-187 (417)
254 PRK06740 histidinol-phosphatas 22.8 6.1E+02 0.013 23.4 13.1 61 98-160 156-220 (331)
255 PRK11359 cyclic-di-GMP phospho 22.8 8.4E+02 0.018 25.0 11.8 113 82-212 632-756 (799)
256 COG1131 CcmA ABC-type multidru 22.7 2.9E+02 0.0063 25.0 6.6 66 95-174 140-205 (293)
257 cd05560 Xcc1710_like Xcc1710_l 22.7 2.8E+02 0.006 21.1 5.5 52 161-213 37-88 (109)
258 PF10668 Phage_terminase: Phag 22.7 82 0.0018 21.4 2.2 17 229-245 24-40 (60)
259 PRK08195 4-hyroxy-2-oxovalerat 22.6 6.3E+02 0.014 23.5 9.7 106 95-211 25-135 (337)
260 TIGR01060 eno phosphopyruvate 22.5 6.9E+02 0.015 24.0 9.5 80 110-209 276-362 (425)
261 cd07945 DRE_TIM_CMS Leptospira 22.4 5.8E+02 0.012 23.0 16.2 37 14-55 5-42 (280)
262 PRK09140 2-dehydro-3-deoxy-6-p 22.4 4.9E+02 0.011 22.2 8.3 44 246-289 97-148 (206)
263 COG4451 RbcS Ribulose bisphosp 22.3 3.6E+02 0.0078 21.1 5.9 72 89-165 17-94 (127)
264 COG0108 RibB 3,4-dihydroxy-2-b 22.2 2.7E+02 0.0058 24.0 5.7 41 170-210 147-191 (203)
265 TIGR01210 conserved hypothetic 22.2 6.1E+02 0.013 23.2 14.3 159 32-219 87-260 (313)
266 cd03317 NAAAR N-acylamino acid 22.2 4.4E+02 0.0096 24.3 8.0 69 143-213 216-288 (354)
267 PF00356 LacI: Bacterial regul 22.1 70 0.0015 20.3 1.7 19 230-248 2-20 (46)
268 cd01976 Nitrogenase_MoFe_alpha 22.0 7E+02 0.015 23.9 16.9 148 55-214 79-253 (421)
269 PRK04165 acetyl-CoA decarbonyl 22.0 7.5E+02 0.016 24.2 12.2 81 111-212 127-209 (450)
270 PF14502 HTH_41: Helix-turn-he 22.0 1.6E+02 0.0035 19.0 3.4 30 228-257 7-38 (48)
271 PF10007 DUF2250: Uncharacteri 21.9 1.7E+02 0.0036 21.8 4.0 52 95-163 7-58 (92)
272 KOG0259 Tyrosine aminotransfer 21.9 7.1E+02 0.015 23.9 12.8 147 26-214 75-242 (447)
273 PRK06015 keto-hydroxyglutarate 21.9 3.4E+02 0.0073 23.3 6.4 60 143-209 42-102 (201)
274 PF00388 PI-PLC-X: Phosphatidy 21.8 62 0.0013 25.9 1.8 17 36-52 29-45 (146)
275 PF03102 NeuB: NeuB family; I 21.6 3.1E+02 0.0068 24.2 6.3 66 194-273 59-135 (241)
276 COG1082 IolE Sugar phosphate i 21.4 5.4E+02 0.012 22.3 8.4 68 145-213 19-106 (274)
277 TIGR01125 MiaB-like tRNA modif 21.3 6.3E+02 0.014 24.2 9.0 66 138-204 164-242 (430)
278 COG2040 MHT1 Homocysteine/sele 21.3 4E+02 0.0086 24.4 6.9 216 32-273 42-296 (300)
279 COG3737 Uncharacterized conser 21.2 1.6E+02 0.0035 23.0 3.8 49 165-213 56-105 (127)
280 PRK14453 chloramphenicol/florf 21.2 6.8E+02 0.015 23.4 8.9 103 110-215 203-330 (347)
281 PF13378 MR_MLE_C: Enolase C-t 21.2 1.4E+02 0.003 22.4 3.6 49 162-212 3-54 (111)
282 smart00857 Resolvase Resolvase 21.0 2.5E+02 0.0054 22.0 5.3 52 97-162 51-102 (148)
283 cd00668 Ile_Leu_Val_MetRS_core 21.0 1.2E+02 0.0026 27.7 3.8 49 93-158 81-131 (312)
284 cd01967 Nitrogenase_MoFe_alpha 20.9 7.1E+02 0.015 23.4 11.8 110 55-180 68-189 (406)
285 cd00952 CHBPH_aldolase Trans-o 20.8 6.5E+02 0.014 22.9 8.8 89 141-235 64-161 (309)
286 PLN03228 methylthioalkylmalate 20.8 7.3E+02 0.016 24.6 9.3 98 95-212 106-230 (503)
287 TIGR00486 YbgI_SA1388 dinuclea 20.5 2.1E+02 0.0045 25.3 5.1 30 39-69 202-231 (249)
288 PF05221 AdoHcyase: S-adenosyl 20.5 3.8E+02 0.0082 24.2 6.6 52 158-211 45-99 (268)
289 PRK08247 cystathionine gamma-s 20.4 4.8E+02 0.011 24.2 7.9 58 156-214 116-176 (366)
290 TIGR01761 thiaz-red thiazoliny 20.4 7.1E+02 0.015 23.2 10.1 84 147-239 18-116 (343)
291 TIGR02082 metH 5-methyltetrahy 20.2 1.2E+03 0.026 25.9 12.6 90 106-212 379-472 (1178)
292 cd00956 Transaldolase_FSA Tran 20.2 5.6E+02 0.012 22.0 9.2 45 244-288 146-195 (211)
293 PTZ00413 lipoate synthase; Pro 20.1 7.7E+02 0.017 23.6 11.3 167 30-214 177-372 (398)
294 COG0820 Predicted Fe-S-cluster 20.1 7.1E+02 0.015 23.4 8.5 101 76-191 99-222 (349)
295 cd00954 NAL N-Acetylneuraminic 20.1 6.4E+02 0.014 22.6 12.3 126 90-235 17-154 (288)
296 PF00072 Response_reg: Respons 20.1 2.1E+02 0.0046 20.6 4.5 58 101-175 33-92 (112)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=4.4e-65 Score=450.83 Aligned_cols=257 Identities=48% Similarity=0.848 Sum_probs=242.9
Q ss_pred ccCCCccCccccccccCCcch-HHHHHHHHHHcCCCEEeCCCCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCC
Q 041263 14 LNTGAKIPSVGLGTWKAPPGE-VGEAVIAAVKAGYRHIDCAHVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLA 92 (318)
Q Consensus 14 ~~tg~~vs~lglG~~~~~~~~-~~~~l~~Al~~Gi~~~DtA~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~ 92 (318)
+++|.+||.||||+|+.+... ..+.+.+|++.|+|+||||..||||+.+|+++++. + ++|+++||+||+|..+.+
T Consensus 8 l~~g~~iP~iGlGt~~~~~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~s---~-v~ReelFittKvw~~~~~ 83 (280)
T COG0656 8 LNNGVEIPAIGLGTWQIGDDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKES---G-VPREELFITTKVWPSDLG 83 (280)
T ss_pred cCCCCcccCcceEeeecCCchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHhc---C-CCHHHeEEEeecCCccCC
Confidence 888999999999999988776 89999999999999999999999999999999983 4 799999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHH
Q 041263 93 PEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDL 172 (318)
Q Consensus 93 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~ 172 (318)
++.+.+++++||+|||+||+|||++|||... .. ..+.++|++|++++++|+||+||||||+.++++++
T Consensus 84 ~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~~-----------~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l 151 (280)
T COG0656 84 YDETLKALEASLKRLGLDYVDLYLIHWPVPN-KY-----------VVIEETWKALEELVDEGLIRAIGVSNFGVEHLEEL 151 (280)
T ss_pred cchHHHHHHHHHHHhCCCceeEEEECCCCCc-cC-----------ccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHH
Confidence 9999999999999999999999999999753 11 23789999999999999999999999999999999
Q ss_pred HHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCCHHHHHHHHHhhc
Q 041263 173 CSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQVALRWGLQS 252 (318)
Q Consensus 173 ~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~ 252 (318)
++.+++.|+++|++||++.++.+++++|+++||.+++||||+.|. .++.++.+.+||++||.|++|++|+|++++
T Consensus 152 ~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~g~-----~l~~~~~l~~Ia~k~g~t~AQv~L~W~i~~ 226 (280)
T COG0656 152 LSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAKGG-----KLLDNPVLAEIAKKYGKTPAQVALRWHIQR 226 (280)
T ss_pred HHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCccccc-----ccccChHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999998763 278889999999999999999999999999
Q ss_pred CCeEecCCCCHHHHHHhhcccCCCCCHHHHHHHHhhhcc
Q 041263 253 GHSILPKSVNESRIKENFNLFDWSIPPKLFSRFSNIHQQ 291 (318)
Q Consensus 253 ~~~vl~g~~~~~~l~enl~~~~~~L~~~~~~~l~~~~~~ 291 (318)
|+++||.+++++|+++|++++++.||++||+.|+++...
T Consensus 227 gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~ 265 (280)
T COG0656 227 GVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRG 265 (280)
T ss_pred CcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999884
No 2
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=4.9e-63 Score=437.76 Aligned_cols=278 Identities=55% Similarity=0.925 Sum_probs=255.0
Q ss_pred ee-ccCCCccCccccccccCCcchHHHHHHHHHHcCCCEEeCCCCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCC
Q 041263 12 FE-LNTGAKIPSVGLGTWKAPPGEVGEAVIAAVKAGYRHIDCAHVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCD 90 (318)
Q Consensus 12 ~~-~~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~ 90 (318)
+. +++|.++|.||||||+.++.+..+.++.|++.|+||||||..||+|..+|++|++.+.++.++|+++||+||+|+.+
T Consensus 6 ~~~Ln~G~~mP~iGlGTw~~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediFiTSKlw~~~ 85 (300)
T KOG1577|consen 6 TVKLNNGFKMPIIGLGTWQSPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIFITSKLWPTD 85 (300)
T ss_pred eEeccCCCccceeeeEecccChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCcchhhheeeeccCccc
Confidence 45 99999999999999999999999999999999999999999999999999999999988889999999999999988
Q ss_pred CCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCC-CCCCCC-CCHHHHHHHHHHHHHcCCeeEEEeeCCChHH
Q 041263 91 LAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFE-PDIMLP-LCLPETWAAMEKLYDSGKARAIGVSNFSTKK 168 (318)
Q Consensus 91 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~-~~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~ 168 (318)
+.++.++.++++||++||+||+|||++|||...++...... .+..+. .+..++|++|+++++.|++|+||||||+..+
T Consensus 86 ~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVSNF~~~~ 165 (300)
T KOG1577|consen 86 HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVSNFNIKQ 165 (300)
T ss_pred cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCceEeeeecCCHHH
Confidence 88999999999999999999999999999988743100000 111111 4678999999999999999999999999999
Q ss_pred HHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCCHHHHHHHH
Q 041263 169 LKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQVALRW 248 (318)
Q Consensus 169 l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~ 248 (318)
+++++..+.++|.++|++++|+.++.+++++|+++||.|.||||||.+.- +. .++.++.+.+||++|+.|++|++|||
T Consensus 166 le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~-~~-~ll~~~~l~~iA~K~~kt~aQIlLrw 243 (300)
T KOG1577|consen 166 LEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR-GS-DLLEDPVLKEIAKKYNKTPAQILLRW 243 (300)
T ss_pred HHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC-cc-ccccCHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988764 22 67889999999999999999999999
Q ss_pred HhhcCCeEecCCCCHHHHHHhhcccCCCCCHHHHHHHHhhhcc
Q 041263 249 GLQSGHSILPKSVNESRIKENFNLFDWSIPPKLFSRFSNIHQQ 291 (318)
Q Consensus 249 ~l~~~~~vl~g~~~~~~l~enl~~~~~~L~~~~~~~l~~~~~~ 291 (318)
++++|++|||.++++++++||++++++.||++|++.|++....
T Consensus 244 ~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~ 286 (300)
T KOG1577|consen 244 ALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSN 286 (300)
T ss_pred HHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999988773
No 3
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=9.3e-58 Score=411.17 Aligned_cols=252 Identities=35% Similarity=0.593 Sum_probs=230.4
Q ss_pred CccCccccccccCCcchHHHHHHHHHHcCCCEEeCCCCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHH
Q 041263 18 AKIPSVGLGTWKAPPGEVGEAVIAAVKAGYRHIDCAHVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVP 97 (318)
Q Consensus 18 ~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~ 97 (318)
++||+||||||+.+.+++.+++++|++.|||+||||+.||+|..+|++|++. + ++|+++||+||++....+++.++
T Consensus 1 ~~vs~lglGt~~~~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~-~~R~~v~i~TK~~~~~~~~~~~~ 76 (267)
T PRK11172 1 MSIPAFGLGTFRLKDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---G-VPRDELFITTKIWIDNLAKDKLI 76 (267)
T ss_pred CCCCCEeeEccccChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---C-CChhHeEEEEEeCCCCCCHHHHH
Confidence 4699999999998888899999999999999999999999999999999863 2 47999999999976667789999
Q ss_pred HHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCC
Q 041263 98 KALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAK 177 (318)
Q Consensus 98 ~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 177 (318)
+++++||+|||+||||+|++|||+.... .+..++|++|++|+++||||+||||||+.++++++++..+
T Consensus 77 ~~~~~SL~rL~~d~iDl~~lH~~~~~~~------------~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~ 144 (267)
T PRK11172 77 PSLKESLQKLRTDYVDLTLIHWPSPNDE------------VSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVG 144 (267)
T ss_pred HHHHHHHHHhCCCceEEEEeCCCCCCCC------------CCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcC
Confidence 9999999999999999999999865311 4568899999999999999999999999999999988765
Q ss_pred C-CCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCCHHHHHHHHHhhcCCeE
Q 041263 178 V-KPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQVALRWGLQSGHSI 256 (318)
Q Consensus 178 ~-~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~~v 256 (318)
. +++++|++||++.++.+++++|+++||+|++|+||++|.+ +..+.+.++|+++|+|++|+||+|++++++++
T Consensus 145 ~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~G~~------~~~~~l~~~a~~~~~s~aqval~w~l~~~~~~ 218 (267)
T PRK11172 145 AENIATNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAYGKV------LKDPVIARIAAKHNATPAQVILAWAMQLGYSV 218 (267)
T ss_pred CCCCeEEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCCCcc------cCCHHHHHHHHHhCCCHHHHHHHHHHhCCCEe
Confidence 4 6899999999999989999999999999999999988743 34577999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhcccCCCCCHHHHHHHHhhhcc
Q 041263 257 LPKSVNESRIKENFNLFDWSIPPKLFSRFSNIHQQ 291 (318)
Q Consensus 257 l~g~~~~~~l~enl~~~~~~L~~~~~~~l~~~~~~ 291 (318)
|+|+++++|+++|+++++++||++++++|+++.+.
T Consensus 219 i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 219 IPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred ecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 99999999999999999999999999999999863
No 4
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.1e-57 Score=418.15 Aligned_cols=261 Identities=32% Similarity=0.455 Sum_probs=232.5
Q ss_pred ccee--ccCCCccCccccccccCCc-------chHHHHHHHHHHcCCCEEeCCCCCC---CHHHHHHHHHhhhhcCCcCC
Q 041263 10 VYFE--LNTGAKIPSVGLGTWKAPP-------GEVGEAVIAAVKAGYRHIDCAHVYD---NEKEVGAALKQFFSTGVVKR 77 (318)
Q Consensus 10 ~~~~--~~tg~~vs~lglG~~~~~~-------~~~~~~l~~Al~~Gi~~~DtA~~Yg---sE~~lG~al~~~~~~~~~~R 77 (318)
|+++ |++|++||+||||||.... +++.++|++|+++||||||||+.|| ||++||++|++. + .|
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~--~R 75 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G--RR 75 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C--CC
Confidence 4554 8999999999999997432 2455699999999999999999999 899999999986 2 28
Q ss_pred CceEEEeccCCC----------CCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 041263 78 DEMFITSKIWCC----------DLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAM 147 (318)
Q Consensus 78 ~~~~i~tK~~~~----------~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L 147 (318)
++++|+||++.. ++++++|+++++.||+||||||||||++|||+.. .+..+++.+|
T Consensus 76 d~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~--------------~p~~e~~~aL 141 (316)
T COG0667 76 DKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPE--------------TPIEETLEAL 141 (316)
T ss_pred CeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCC--------------CCHHHHHHHH
Confidence 999999999542 3478899999999999999999999999999874 7789999999
Q ss_pred HHHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCC--hHHHHHHHhcCcEEEEecCCCCCCCCCcccc-
Q 041263 148 EKLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQ--PALHEYCKSSGVHLTAYSPLGSPGSWVKGEI- 224 (318)
Q Consensus 148 ~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~- 224 (318)
.+|+++||||+||+||++.+++.++.+.+ .+++++|.+||+++++ .+++++|+++||++++|+|+++|.|+++...
T Consensus 142 ~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~ 220 (316)
T COG0667 142 DELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG 220 (316)
T ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHhc-CCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC
Confidence 99999999999999999999999998886 6789999999999976 3589999999999999999999999987322
Q ss_pred -----------cc----------hHHHHHHHHHhCCCHHHHHHHHHhhcC--CeEecCCCCHHHHHHhhcccCCCCCHHH
Q 041263 225 -----------LK----------EAILQEIAGELNKSPAQVALRWGLQSG--HSILPKSVNESRIKENFNLFDWSIPPKL 281 (318)
Q Consensus 225 -----------~~----------~~~l~~la~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~~~~~~L~~~~ 281 (318)
+. ...++++|+++|+|++|+||+|++++| .++|+|+++++|+++|+++++..|++++
T Consensus 221 ~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~ 300 (316)
T COG0667 221 PEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEE 300 (316)
T ss_pred cchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHH
Confidence 10 134899999999999999999999997 6899999999999999999999999999
Q ss_pred HHHHHhhhc
Q 041263 282 FSRFSNIHQ 290 (318)
Q Consensus 282 ~~~l~~~~~ 290 (318)
++.|++...
T Consensus 301 ~~~l~~~~~ 309 (316)
T COG0667 301 LAALDEISA 309 (316)
T ss_pred HHHHHHHhh
Confidence 999998766
No 5
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=5.9e-57 Score=406.13 Aligned_cols=273 Identities=27% Similarity=0.367 Sum_probs=243.7
Q ss_pred CCcccee--ccCCCccCccccccc-------cCCcchHHHHHHHHHHcCCCEEeCCCCCC---CHHHHHHHHHhhhhcCC
Q 041263 7 HGPVYFE--LNTGAKIPSVGLGTW-------KAPPGEVGEAVIAAVKAGYRHIDCAHVYD---NEKEVGAALKQFFSTGV 74 (318)
Q Consensus 7 ~~~~~~~--~~tg~~vs~lglG~~-------~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---sE~~lG~al~~~~~~~~ 74 (318)
...|+++ |++|++||++||||| +.+.+++.+++++|+|+|+||||||++|| ||.++|++|+++ +
T Consensus 9 ~~~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~---~- 84 (336)
T KOG1575|consen 9 ELGMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR---G- 84 (336)
T ss_pred hhcceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc---C-
Confidence 3457776 899999999999993 25788999999999999999999999999 799999999996 2
Q ss_pred cCCCceEEEeccCCC-------CCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 041263 75 VKRDEMFITSKIWCC-------DLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAM 147 (318)
Q Consensus 75 ~~R~~~~i~tK~~~~-------~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L 147 (318)
.+|++++|+||++.. ..+...+...++.|++|||++|||+|++||+|.. .++++++++|
T Consensus 85 ~~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~--------------~piee~m~aL 150 (336)
T KOG1575|consen 85 WRRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPM--------------VPIEETMRAL 150 (336)
T ss_pred CcCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCC--------------CCHHHHHHHH
Confidence 479999999999642 2355779999999999999999999999999876 7789999999
Q ss_pred HHHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCC---hHHHHHHHhcCcEEEEecCCCCCCCCCcccc
Q 041263 148 EKLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQ---PALHEYCKSSGVHLTAYSPLGSPGSWVKGEI 224 (318)
Q Consensus 148 ~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~ 224 (318)
.+|+++||||+||+|+++.+++.++...+.++++++|++||++.++ .++++.|++.||++++||||+.|.|+++...
T Consensus 151 ~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~ 230 (336)
T KOG1575|consen 151 TDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKL 230 (336)
T ss_pred HHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccc
Confidence 9999999999999999999999999999888899999999999987 4699999999999999999999999987211
Q ss_pred -------------------c--------chHHHHHHHHHhCCCHHHHHHHHHhhcC--CeEecCCCCHHHHHHhhcccCC
Q 041263 225 -------------------L--------KEAILQEIAGELNKSPAQVALRWGLQSG--HSILPKSVNESRIKENFNLFDW 275 (318)
Q Consensus 225 -------------------~--------~~~~l~~la~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~~~~~ 275 (318)
. --.++.++|+++|+|++|+||+|+++++ +++|||+++++|++||++++..
T Consensus 231 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~ 310 (336)
T KOG1575|consen 231 GEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSV 310 (336)
T ss_pred ccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhc
Confidence 0 0145899999999999999999999997 7899999999999999999999
Q ss_pred CCCHHHHHHHHhhhcccccccc
Q 041263 276 SIPPKLFSRFSNIHQQRLLRGT 297 (318)
Q Consensus 276 ~L~~~~~~~l~~~~~~~~~~~~ 297 (318)
.|+++++.+|+++.+.....++
T Consensus 311 ~Lt~e~~~~l~~~~~~~~~~~~ 332 (336)
T KOG1575|consen 311 KLTPEEIKELEEIIDKILGFGP 332 (336)
T ss_pred cCCHHHHHHHHHhhccccCcCC
Confidence 9999999999999985544333
No 6
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=6.1e-56 Score=413.20 Aligned_cols=274 Identities=23% Similarity=0.347 Sum_probs=235.9
Q ss_pred CcccccCCcccee--ccCCCccCcccccccc-C----CcchHHHHHHHHHHcCCCEEeCCCCCC-----CHHHHHHHHHh
Q 041263 1 MSEKAQHGPVYFE--LNTGAKIPSVGLGTWK-A----PPGEVGEAVIAAVKAGYRHIDCAHVYD-----NEKEVGAALKQ 68 (318)
Q Consensus 1 ~~~~~~~~~~~~~--~~tg~~vs~lglG~~~-~----~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-----sE~~lG~al~~ 68 (318)
|++.-+.+.|+++ |+||++||+||||||+ . +.+++.++|++|+++|||+||||+.|| ||..||++|++
T Consensus 4 ~~~~~~~~~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~ 83 (346)
T PRK09912 4 LANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLRE 83 (346)
T ss_pred eccCCCCCCcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHh
Confidence 5566677789888 8999999999999996 2 345678999999999999999999998 69999999986
Q ss_pred hhhcCCcCCCceEEEeccCCC--------CCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCH
Q 041263 69 FFSTGVVKRDEMFITSKIWCC--------DLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCL 140 (318)
Q Consensus 69 ~~~~~~~~R~~~~i~tK~~~~--------~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~ 140 (318)
.. ...|++++|+||++.. ..+++.+++++++||+|||+||||+|++|+|+.. .+.
T Consensus 84 ~~---~~~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~--------------~~~ 146 (346)
T PRK09912 84 DF---AAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDEN--------------TPM 146 (346)
T ss_pred cc---cCCCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCC--------------CCH
Confidence 31 1259999999998531 2457789999999999999999999999999753 567
Q ss_pred HHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHH---hCCCCCeeEEeeecCCCCC---hHHHHHHHhcCcEEEEecCCC
Q 041263 141 PETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCS---YAKVKPAVNQVECHPVWQQ---PALHEYCKSSGVHLTAYSPLG 214 (318)
Q Consensus 141 ~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~---~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~ 214 (318)
.++|++|++|+++||||+||||||++++++++.+ ..+++++++|++||++++. .+++++|+++||++++|+||+
T Consensus 147 ~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~ 226 (346)
T PRK09912 147 EETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLA 226 (346)
T ss_pred HHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhc
Confidence 8999999999999999999999999998876654 3456789999999999974 469999999999999999999
Q ss_pred CCCCCCccc----------------------ccc------hHHHHHHHHHhCCCHHHHHHHHHhhcC--CeEecCCCCHH
Q 041263 215 SPGSWVKGE----------------------ILK------EAILQEIAGELNKSPAQVALRWGLQSG--HSILPKSVNES 264 (318)
Q Consensus 215 ~g~l~~~~~----------------------~~~------~~~l~~la~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~ 264 (318)
+|.|+++.. .+. .+.+.++|+++|+|++|+||+|++++| .++|||+++++
T Consensus 227 ~G~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ 306 (346)
T PRK09912 227 QGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAE 306 (346)
T ss_pred CccccCCCCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHH
Confidence 998886420 000 156889999999999999999999998 67899999999
Q ss_pred HHHHhhcccC-CCCCHHHHHHHHhhhcc
Q 041263 265 RIKENFNLFD-WSIPPKLFSRFSNIHQQ 291 (318)
Q Consensus 265 ~l~enl~~~~-~~L~~~~~~~l~~~~~~ 291 (318)
|+++|+++++ ++|+++++++|+++.+.
T Consensus 307 ql~en~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 307 QLEENVQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHhhCc
Confidence 9999999984 79999999999998764
No 7
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.2e-55 Score=398.78 Aligned_cols=254 Identities=39% Similarity=0.734 Sum_probs=233.1
Q ss_pred ccCCCccCccccccccCCcchHHHHHHHHHHcCCCEEeCCCCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCC
Q 041263 14 LNTGAKIPSVGLGTWKAPPGEVGEAVIAAVKAGYRHIDCAHVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAP 93 (318)
Q Consensus 14 ~~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~ 93 (318)
+++|+.||+||||||+.+.+++.++|++|++.|||+||||+.||+|+.+|++|++. + ++|++++|+||++. .++
T Consensus 9 l~~g~~v~~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~-~~R~~~~i~tK~~~--~~~ 82 (275)
T PRK11565 9 LQDGNVMPQLGLGVWQASNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---S-VAREELFITTKLWN--DDH 82 (275)
T ss_pred cCCCCccCCcceECccCCHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---C-CCHHHEEEEEEecC--cch
Confidence 78999999999999998889999999999999999999999999999999999974 2 46999999999974 346
Q ss_pred ChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHH
Q 041263 94 EDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLC 173 (318)
Q Consensus 94 ~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (318)
+.+++++++||+|||+||||+|++|+|+... ....++|++|++|+++|+||+||||||+++++++++
T Consensus 83 ~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~-------------~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~ 149 (275)
T PRK11565 83 KRPREALEESLKKLQLDYVDLYLMHWPVPAI-------------DHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLI 149 (275)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecCCCCCc-------------CcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHH
Confidence 7999999999999999999999999997531 235799999999999999999999999999999998
Q ss_pred HhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCCHHHHHHHHHhhcC
Q 041263 174 SYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQVALRWGLQSG 253 (318)
Q Consensus 174 ~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~ 253 (318)
...++++.++|++++++.++.+++++|+++||++++|+|+++|.. ..+..+.+.++|+++|+|++|+||+|+++++
T Consensus 150 ~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~G~~----~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~ 225 (275)
T PRK11565 150 DETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQGGK----GVFDQKVIRDLADKYGKTPAQIVIRWHLDSG 225 (275)
T ss_pred HhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCCCCc----ccccCHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 877788999999999999888999999999999999999986631 2345688999999999999999999999999
Q ss_pred CeEecCCCCHHHHHHhhcccCCCCCHHHHHHHHhhhc
Q 041263 254 HSILPKSVNESRIKENFNLFDWSIPPKLFSRFSNIHQ 290 (318)
Q Consensus 254 ~~vl~g~~~~~~l~enl~~~~~~L~~~~~~~l~~~~~ 290 (318)
.++|+|+++++|+++|+++++++|+++++++|+++..
T Consensus 226 ~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~ 262 (275)
T PRK11565 226 LVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQ 262 (275)
T ss_pred CEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999976
No 8
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1e-55 Score=407.37 Aligned_cols=257 Identities=27% Similarity=0.391 Sum_probs=225.6
Q ss_pred ccCCCccCcccccccc-----CCcchHHHHHHHHHHcCCCEEeCCCCCC---CHHHHHHHHHhhhhcCCcCCCceEEEec
Q 041263 14 LNTGAKIPSVGLGTWK-----APPGEVGEAVIAAVKAGYRHIDCAHVYD---NEKEVGAALKQFFSTGVVKRDEMFITSK 85 (318)
Q Consensus 14 ~~tg~~vs~lglG~~~-----~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---sE~~lG~al~~~~~~~~~~R~~~~i~tK 85 (318)
|+||++||+||||||+ .+.+++.++|+.|+++|||+||||+.|| ||+.||++|+.. + .+|++++|+||
T Consensus 5 g~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~-~~R~~~~iaTK 80 (317)
T TIGR01293 5 GKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---G-WRRSSYVITTK 80 (317)
T ss_pred CCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---C-CCcccEEEEee
Confidence 8999999999999985 4667899999999999999999999998 899999999863 2 36999999999
Q ss_pred cCCC-------CCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeE
Q 041263 86 IWCC-------DLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARA 158 (318)
Q Consensus 86 ~~~~-------~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~ 158 (318)
++.. +++++.+++++++||+||||||||+|++|||+.. .+..++|++|++|+++||||+
T Consensus 81 ~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~--------------~~~~e~~~aL~~l~~~G~ir~ 146 (317)
T TIGR01293 81 IFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPN--------------TPMEETVRAMTYVINQGMAMY 146 (317)
T ss_pred eccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCC--------------CCHHHHHHHHHHHHHcCCeeE
Confidence 8432 3467899999999999999999999999999753 567899999999999999999
Q ss_pred EEeeCCChHHHHHHHHhCC----CCCeeEEeeecCCCCC---hHHHHHHHhcCcEEEEecCCCCCCCCCcccc-------
Q 041263 159 IGVSNFSTKKLKDLCSYAK----VKPAVNQVECHPVWQQ---PALHEYCKSSGVHLTAYSPLGSPGSWVKGEI------- 224 (318)
Q Consensus 159 iGvs~~~~~~l~~~~~~~~----~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~------- 224 (318)
||+|||+.+++.++...+. ++++++|++||++.++ .+++++|+++||++++|+||++|.|+++..-
T Consensus 147 iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~~~~~~~ 226 (317)
T TIGR01293 147 WGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSGIPPYSR 226 (317)
T ss_pred EEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCccc
Confidence 9999999999887755432 5788999999999886 2689999999999999999999988865210
Q ss_pred -----c-----------------chHHHHHHHHHhCCCHHHHHHHHHhhcC--CeEecCCCCHHHHHHhhcccCC--CCC
Q 041263 225 -----L-----------------KEAILQEIAGELNKSPAQVALRWGLQSG--HSILPKSVNESRIKENFNLFDW--SIP 278 (318)
Q Consensus 225 -----~-----------------~~~~l~~la~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~~~~~--~L~ 278 (318)
+ ..+.+.++|+++|+|++|+||+|++++| .++|+|+++++|+++|+++++. +|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls 306 (317)
T TIGR01293 227 ATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLS 306 (317)
T ss_pred ccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCC
Confidence 0 0146899999999999999999999997 4789999999999999999997 999
Q ss_pred HHHHHHHHhh
Q 041263 279 PKLFSRFSNI 288 (318)
Q Consensus 279 ~~~~~~l~~~ 288 (318)
++++++|+++
T Consensus 307 ~e~~~~l~~~ 316 (317)
T TIGR01293 307 SSIIHEIDSI 316 (317)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 9
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=7.4e-55 Score=406.31 Aligned_cols=276 Identities=26% Similarity=0.334 Sum_probs=229.6
Q ss_pred ccee--ccCCCccCccccccccC----CcchHHHHHHHHHHcCCCEEeCCCCCC----------CHHHHHHHHHhhhhcC
Q 041263 10 VYFE--LNTGAKIPSVGLGTWKA----PPGEVGEAVIAAVKAGYRHIDCAHVYD----------NEKEVGAALKQFFSTG 73 (318)
Q Consensus 10 ~~~~--~~tg~~vs~lglG~~~~----~~~~~~~~l~~Al~~Gi~~~DtA~~Yg----------sE~~lG~al~~~~~~~ 73 (318)
|+|+ |+||++||+||||||+. +.+++.++|+.|++.||||||||+.|| ||..||++|+..
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~---- 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR---- 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc----
Confidence 4555 89999999999999974 457899999999999999999999996 899999999863
Q ss_pred CcCCCceEEEeccCCC------------CCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCC--CCCCCCCC-CCCC
Q 041263 74 VVKRDEMFITSKIWCC------------DLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPE--TRGFEPDI-MLPL 138 (318)
Q Consensus 74 ~~~R~~~~i~tK~~~~------------~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~--~~~~~~~~-~~~~ 138 (318)
..|++++|+||++.. +.+++.+++++++||+|||+||||+|++|||+..... ........ ....
T Consensus 77 -~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~ 155 (346)
T PRK10625 77 -GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAV 155 (346)
T ss_pred -CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCC
Confidence 259999999998531 3567899999999999999999999999999753100 00000000 0014
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhC---C-CCCeeEEeeecCCCCC--hHHHHHHHhcCcEEEEecC
Q 041263 139 CLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYA---K-VKPAVNQVECHPVWQQ--PALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 139 ~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~---~-~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~p 212 (318)
+..++|++|++|+++||||+||+|||+.+++.+++..+ . ..+.++|++||+++++ .+++++|+++||++++|+|
T Consensus 156 ~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~sp 235 (346)
T PRK10625 156 SLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSC 235 (346)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEecc
Confidence 57899999999999999999999999999988776532 2 3578899999999876 5799999999999999999
Q ss_pred CCCCCCCCccc-----------ccc-------------hHHHHHHHHHhCCCHHHHHHHHHhhcC--CeEecCCCCHHHH
Q 041263 213 LGSPGSWVKGE-----------ILK-------------EAILQEIAGELNKSPAQVALRWGLQSG--HSILPKSVNESRI 266 (318)
Q Consensus 213 l~~g~l~~~~~-----------~~~-------------~~~l~~la~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l 266 (318)
|++|.|+++.. .+. .+.+.++|+++|+|++|+||+|++++| .++|+|+++++|+
T Consensus 236 L~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l 315 (346)
T PRK10625 236 LAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQL 315 (346)
T ss_pred ccCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHH
Confidence 99988876410 111 256889999999999999999999998 3689999999999
Q ss_pred HHhhcccCCCCCHHHHHHHHhhhc
Q 041263 267 KENFNLFDWSIPPKLFSRFSNIHQ 290 (318)
Q Consensus 267 ~enl~~~~~~L~~~~~~~l~~~~~ 290 (318)
++|+++++++|++++++.|+++..
T Consensus 316 ~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 316 KTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHhhccCCCCHHHHHHHHHHHh
Confidence 999999999999999999999865
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=2.9e-53 Score=385.64 Aligned_cols=257 Identities=40% Similarity=0.592 Sum_probs=232.2
Q ss_pred ccCCCccCccccccccCC-----cchHHHHHHHHHHcCCCEEeCCCCCC---CHHHHHHHHHhhhhcCCcCCCceEEEec
Q 041263 14 LNTGAKIPSVGLGTWKAP-----PGEVGEAVIAAVKAGYRHIDCAHVYD---NEKEVGAALKQFFSTGVVKRDEMFITSK 85 (318)
Q Consensus 14 ~~tg~~vs~lglG~~~~~-----~~~~~~~l~~Al~~Gi~~~DtA~~Yg---sE~~lG~al~~~~~~~~~~R~~~~i~tK 85 (318)
++||++||+||||+|+.. .+++.+++++|++.|||+||||+.|| ||+.+|++|++. ..|++++|+||
T Consensus 5 g~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~-----~~R~~~~i~tK 79 (285)
T cd06660 5 GKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER-----GPREEVFIATK 79 (285)
T ss_pred CCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc-----CCcCcEEEEee
Confidence 789999999999999753 47899999999999999999999998 899999999985 14999999999
Q ss_pred cCCCC-----CCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 041263 86 IWCCD-----LAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIG 160 (318)
Q Consensus 86 ~~~~~-----~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iG 160 (318)
++... .+++.+++++++||++||++|||+|+||+|+... ....++|++|++++++|+||+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~-------------~~~~~~~~~l~~l~~~G~ir~iG 146 (285)
T cd06660 80 VGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDT-------------PDIEETLRALEELVKEGKIRAIG 146 (285)
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCC-------------CCHHHHHHHHHHHHHcCCccEEE
Confidence 98653 5789999999999999999999999999997642 23689999999999999999999
Q ss_pred eeCCChHHHHHHHHhCCCCCeeEEeeecCCCCChH--HHHHHHhcCcEEEEecCCCCCCCCCccccc-------chHHHH
Q 041263 161 VSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQPA--LHEYCKSSGVHLTAYSPLGSPGSWVKGEIL-------KEAILQ 231 (318)
Q Consensus 161 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~--l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~-------~~~~l~ 231 (318)
||+|+++.+.++++.+..+++++|++||++++..+ ++++|+++||++++|+||++|.++++.... ....+.
T Consensus 147 vS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~~~~~~~~~ 226 (285)
T cd06660 147 VSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGDLLEALK 226 (285)
T ss_pred eeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCChhhHHHHHH
Confidence 99999999999998887899999999999999854 999999999999999999988776553322 136789
Q ss_pred HHHHHhCCCHHHHHHHHHhhcC--CeEecCCCCHHHHHHhhcccCCCCCHHHHHHHHhh
Q 041263 232 EIAGELNKSPAQVALRWGLQSG--HSILPKSVNESRIKENFNLFDWSIPPKLFSRFSNI 288 (318)
Q Consensus 232 ~la~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~~~~~~L~~~~~~~l~~~ 288 (318)
.++++++.|++|+|++|++++| .++++|+++++|+++|+++...+|++++++.|+++
T Consensus 227 ~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 227 EIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred HHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 9999999999999999999996 68999999999999999999999999999999863
No 11
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=8.2e-53 Score=387.68 Aligned_cols=262 Identities=26% Similarity=0.308 Sum_probs=222.8
Q ss_pred ccCCCccCcccccccc-------CCcchHHHHHHHHHHcCCCEEeCCCCCC---CHHHHHHHHHhhhhcCCcCCCceEEE
Q 041263 14 LNTGAKIPSVGLGTWK-------APPGEVGEAVIAAVKAGYRHIDCAHVYD---NEKEVGAALKQFFSTGVVKRDEMFIT 83 (318)
Q Consensus 14 ~~tg~~vs~lglG~~~-------~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---sE~~lG~al~~~~~~~~~~R~~~~i~ 83 (318)
|+||++||.||||||+ .+.+++.++|++|++.|||+||||+.|| ||+.+|++|++. + .+|++++|+
T Consensus 5 g~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~-~~R~~v~I~ 80 (314)
T PLN02587 5 GSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---G-IPREKYVVS 80 (314)
T ss_pred CCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---C-CCcceEEEE
Confidence 8999999999999985 3567789999999999999999999997 699999999974 2 369999999
Q ss_pred eccCC----CCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEE
Q 041263 84 SKIWC----CDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAI 159 (318)
Q Consensus 84 tK~~~----~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~i 159 (318)
||++. .+++++.+++++++||++||+||||+|++|+|+..... ....++|++|++|+++||||+|
T Consensus 81 TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~-----------~~~~~~~~~l~~l~~~Gkir~i 149 (314)
T PLN02587 81 TKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLD-----------QIVNETIPALQKLKESGKVRFI 149 (314)
T ss_pred eccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchh-----------hhHHHHHHHHHHHHHCCCeEEE
Confidence 99974 24678899999999999999999999999999642111 3457899999999999999999
Q ss_pred EeeCCChHHHHHHHHhCC---CCCeeEEeeecCCCCC-hHHHHHHHhcCcEEEEecCCCCCCCCCccc-cc---------
Q 041263 160 GVSNFSTKKLKDLCSYAK---VKPAVNQVECHPVWQQ-PALHEYCKSSGVHLTAYSPLGSPGSWVKGE-IL--------- 225 (318)
Q Consensus 160 Gvs~~~~~~l~~~~~~~~---~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~-~~--------- 225 (318)
|+|||+++++..+.+... +.+.++|+.||+.++. .+++++|+++||++++|+||++|.|+++.. ..
T Consensus 150 GvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~ 229 (314)
T PLN02587 150 GITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAMGLLTENGPPEWHPAPPELKS 229 (314)
T ss_pred EecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhccccCCCCCCCCCCCCHHHHH
Confidence 999999998877765432 3445567888887654 589999999999999999999998886521 00
Q ss_pred chHHHHHHHHHhCCCHHHHHHHHHhhcC--CeEecCCCCHHHHHHhhcccCC----CCCHHHHHHHHhhhc
Q 041263 226 KEAILQEIAGELNKSPAQVALRWGLQSG--HSILPKSVNESRIKENFNLFDW----SIPPKLFSRFSNIHQ 290 (318)
Q Consensus 226 ~~~~l~~la~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~~~~~----~L~~~~~~~l~~~~~ 290 (318)
..+.++++|+++|+|++|+||+|++++| .++|+|+++++|+++|+++++. +|+++++++++++..
T Consensus 230 ~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~ 300 (314)
T PLN02587 230 ACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILA 300 (314)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhc
Confidence 0134778999999999999999999998 4789999999999999999763 799999999998876
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=7e-52 Score=377.24 Aligned_cols=262 Identities=23% Similarity=0.367 Sum_probs=222.9
Q ss_pred CcccccCCccceeccCCCccCccccccccC----------CcchHHHHHHHHHHcCCCEEeCCCCCC---CHHHHHHHHH
Q 041263 1 MSEKAQHGPVYFELNTGAKIPSVGLGTWKA----------PPGEVGEAVIAAVKAGYRHIDCAHVYD---NEKEVGAALK 67 (318)
Q Consensus 1 ~~~~~~~~~~~~~~~tg~~vs~lglG~~~~----------~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---sE~~lG~al~ 67 (318)
|...+..+.+. ++ |++||+||||||+. +.+++.++|+.|++.|||+||||+.|| +|+.+|++++
T Consensus 1 ~~~~~~~~~~~--l~-g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~ 77 (290)
T PRK10376 1 MSTIMSSGTFT--LG-GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALH 77 (290)
T ss_pred CcccccCCcee--cC-CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHh
Confidence 34444444321 44 89999999999974 246689999999999999999999998 5899999997
Q ss_pred hhhhcCCcCCCceEEEeccCC---------CCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCC-CCCCCCCCCCCCC
Q 041263 68 QFFSTGVVKRDEMFITSKIWC---------CDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTK-PETRGFEPDIMLP 137 (318)
Q Consensus 68 ~~~~~~~~~R~~~~i~tK~~~---------~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~-~~~~~~~~~~~~~ 137 (318)
. .|++++|+||++. .+.+++.+++++++||+|||+||||+|++|++.... +. .
T Consensus 78 ~-------~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~----------~ 140 (290)
T PRK10376 78 P-------YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPA----------E 140 (290)
T ss_pred c-------CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCC----------C
Confidence 4 4999999999853 245678899999999999999999999999853211 10 0
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCC-hHHHHHHHhcCcEEEEecCCCCC
Q 041263 138 LCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQ-PALHEYCKSSGVHLTAYSPLGSP 216 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~g 216 (318)
....++|++|++|+++||||+||||||+++++.++.+.+ +++++|++||++.+. .+++++|+++||++++|+||+++
T Consensus 141 ~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g~ 218 (290)
T PRK10376 141 GSIEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIA--EIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGGF 218 (290)
T ss_pred CCHHHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhC--CeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCCC
Confidence 456889999999999999999999999999999988765 568999999999876 67999999999999999999643
Q ss_pred CCCCcccccchHHHHHHHHHhCCCHHHHHHHHHhhcC--CeEecCCCCHHHHHHhhcccCCCCCHHHHHHHHhhhc
Q 041263 217 GSWVKGEILKEAILQEIAGELNKSPAQVALRWGLQSG--HSILPKSVNESRIKENFNLFDWSIPPKLFSRFSNIHQ 290 (318)
Q Consensus 217 ~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~~~~~~L~~~~~~~l~~~~~ 290 (318)
.....+.+.++|+++|+|++|+||+|+++++ +++|+|+++++|+++|+++++++|++++++.|+++.+
T Consensus 219 ------~~~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 219 ------TPLQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred ------ChhhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 2223578999999999999999999999874 6789999999999999999999999999999998865
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=2.2e-52 Score=379.43 Aligned_cols=250 Identities=35% Similarity=0.576 Sum_probs=216.0
Q ss_pred cccccccc-----CCcchHHHHHHHHHHcCCCEEeCCCCCC---CHHHHHHHHHhhhhcCCcCCCceEEEecc-----CC
Q 041263 22 SVGLGTWK-----APPGEVGEAVIAAVKAGYRHIDCAHVYD---NEKEVGAALKQFFSTGVVKRDEMFITSKI-----WC 88 (318)
Q Consensus 22 ~lglG~~~-----~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---sE~~lG~al~~~~~~~~~~R~~~~i~tK~-----~~ 88 (318)
+||||||+ .+.+++.++|+.|++.|||+||||+.|| ||+.+|++|++. ..+|++++|+||+ +.
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~----~~~r~~~~i~tK~~~~~~~~ 76 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKS----RVPRDDIFISTKVYGDGKPE 76 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHT----SSTGGGSEEEEEEESSSSTG
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccc----cccccccccccccccccccc
Confidence 58999984 5778899999999999999999999993 899999999982 2589999999999 44
Q ss_pred CCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHcCCeeEEEeeCCChH
Q 041263 89 CDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLC-LPETWAAMEKLYDSGKARAIGVSNFSTK 167 (318)
Q Consensus 89 ~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~l~~~G~ir~iGvs~~~~~ 167 (318)
.+++++.+++++++||++||+||||+|++|+|+.. .. ..++|++|++|+++|+||+||||||+++
T Consensus 77 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~--------------~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~ 142 (283)
T PF00248_consen 77 PDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPS--------------EDALEEVWEALEELKKEGKIRHIGVSNFSPE 142 (283)
T ss_dssp GGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTT--------------SSHHHHHHHHHHHHHHTTSEEEEEEES--HH
T ss_pred ccccccccccccccccccccccchhcccccccccc--------------ccccchhhhhhhhcccccccccccccccccc
Confidence 56788999999999999999999999999999875 44 7999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCeeEEeeecCCCC--ChHHHHHHHhcCcEEEEecCCCCCCCCCccc--------------ccchHHHH
Q 041263 168 KLKDLCSYAKVKPAVNQVECHPVWQ--QPALHEYCKSSGVHLTAYSPLGSPGSWVKGE--------------ILKEAILQ 231 (318)
Q Consensus 168 ~l~~~~~~~~~~~~~~q~~~~~~~~--~~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~--------------~~~~~~l~ 231 (318)
.++.+.....++++++|++||++.+ ..+++++|+++||++++|+|+++|.++++.. ....+.+.
T Consensus 143 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 222 (283)
T PF00248_consen 143 QLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRDAQELADALR 222 (283)
T ss_dssp HHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSSTHGGGHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccCccccccccCCCcccccccchhhhhhhhhh
Confidence 9999977778899999999999943 3689999999999999999999988775521 14457899
Q ss_pred HHHHHhCCCHHHHHHHHHhhcC--CeEecCCCCHHHHHHhhcccCCCCCHHHHHHHHhhh
Q 041263 232 EIAGELNKSPAQVALRWGLQSG--HSILPKSVNESRIKENFNLFDWSIPPKLFSRFSNIH 289 (318)
Q Consensus 232 ~la~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~~~~~~L~~~~~~~l~~~~ 289 (318)
++++++|.|++|+||+|+++++ .++++|+++++|+++|+++++.+||++++++|+++.
T Consensus 223 ~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 223 ELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 9999999999999999999764 799999999999999999999999999999999875
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=7.2e-50 Score=363.66 Aligned_cols=250 Identities=17% Similarity=0.190 Sum_probs=212.1
Q ss_pred CCccCccccccccC--------------CcchHHHHHHHHHHcCCCEEeCCCCCC-CHHHHHHHHHhhhhcCCcCCCceE
Q 041263 17 GAKIPSVGLGTWKA--------------PPGEVGEAVIAAVKAGYRHIDCAHVYD-NEKEVGAALKQFFSTGVVKRDEMF 81 (318)
Q Consensus 17 g~~vs~lglG~~~~--------------~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-sE~~lG~al~~~~~~~~~~R~~~~ 81 (318)
+++||+||||||+. +.+++.++|+.|++.||||||||+.|| ||..+|++|++. .+++++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~------~~~~~~ 75 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP------VPFRVT 75 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC------CceEee
Confidence 57899999999853 346789999999999999999999999 899999999752 356789
Q ss_pred EEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHcCCeeEEE
Q 041263 82 ITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCL-PETWAAMEKLYDSGKARAIG 160 (318)
Q Consensus 82 i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~l~~~G~ir~iG 160 (318)
|+||.. +.+++.+++++++||+|||+||||+|++|+|+... .+. .++|++|++|+++||||+||
T Consensus 76 i~tk~~--~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~-------------~~~~~~~~~~l~~l~~~Gkir~iG 140 (292)
T PRK14863 76 LSTVRA--DRGPDFVEAEARASLRRMGVERADAILVHSPTELF-------------GPHGAALWERLQALKDQGLFAKIG 140 (292)
T ss_pred cccccc--cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhc-------------CcchHHHHHHHHHHHHcCCcceEe
Confidence 999853 35678999999999999999999999999986421 122 57899999999999999999
Q ss_pred eeCCChHHHHHHHHhCCCCCeeEEeeecCCCCC---hHHHHHHHhcCcEEEEecCCCCCCCCCcccc---------cchH
Q 041263 161 VSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQ---PALHEYCKSSGVHLTAYSPLGSPGSWVKGEI---------LKEA 228 (318)
Q Consensus 161 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~---------~~~~ 228 (318)
||||+++++..+... .+++++|++||+++++ .+++++|+++||++++|+||++|.|++.... ....
T Consensus 141 vSn~~~~~~~~~~~~--~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~ 218 (292)
T PRK14863 141 VSAHASDDPVGVARR--FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDRVPAQLKGASGRLS 218 (292)
T ss_pred eeccCHHHHHHHHhc--CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcccCccchhhhhHHHH
Confidence 999999998877543 5789999999999986 3599999999999999999999988754211 1124
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhhcC--CeEecCCCCHHHHHHhhcccCCCCCHHHHHHHHhhh
Q 041263 229 ILQEIAGELNKSPAQVALRWGLQSG--HSILPKSVNESRIKENFNLFDWSIPPKLFSRFSNIH 289 (318)
Q Consensus 229 ~l~~la~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~~~~~~L~~~~~~~l~~~~ 289 (318)
.+..++.+.++|++|+||+|++++| .++|+|+++++|+++|+++.+.++++..+++|..-.
T Consensus 219 ~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~~ 281 (292)
T PRK14863 219 RVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAIDD 281 (292)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCCh
Confidence 4667888889999999999999997 578999999999999999999999998877765443
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=4.6e-49 Score=334.94 Aligned_cols=263 Identities=27% Similarity=0.370 Sum_probs=236.5
Q ss_pred ccee--ccCCCccCcccccccc-----CCcchHHHHHHHHHHcCCCEEeCCCCCC---CHHHHHHHHHhhhhcCCcCCCc
Q 041263 10 VYFE--LNTGAKIPSVGLGTWK-----APPGEVGEAVIAAVKAGYRHIDCAHVYD---NEKEVGAALKQFFSTGVVKRDE 79 (318)
Q Consensus 10 ~~~~--~~tg~~vs~lglG~~~-----~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---sE~~lG~al~~~~~~~~~~R~~ 79 (318)
|++. ++.|+.+|++.+|+|+ .++++....|+.|++.||++||-|+.|| .|+++|.+|+-. +.-|++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~----p~lRek 76 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA----PGLREK 76 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC----hhhhhh
Confidence 4555 6689999999999997 4557889999999999999999999999 699999999874 346999
Q ss_pred eEEEeccCC------------CCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 041263 80 MFITSKIWC------------CDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAM 147 (318)
Q Consensus 80 ~~i~tK~~~------------~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L 147 (318)
+.|+||++. .+.+.++|.+++|+||++|+|||+|+++||.||.. ++.+++-+|+
T Consensus 77 ieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpL--------------md~eeVAeAf 142 (298)
T COG4989 77 IEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPL--------------MDAEEVAEAF 142 (298)
T ss_pred eEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCccc--------------CCHHHHHHHH
Confidence 999999963 46788999999999999999999999999999986 7789999999
Q ss_pred HHHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCC---hHHHHHHHhcCcEEEEecCCCCCCCCCcccc
Q 041263 148 EKLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQ---PALHEYCKSSGVHLTAYSPLGSPGSWVKGEI 224 (318)
Q Consensus 148 ~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~ 224 (318)
..|.+.||||++|||||+|.+++-+.+....+.+.||+++|+++.. .+.+++|+++.|.+++||||++|++......
T Consensus 143 ~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~~~ 222 (298)
T COG4989 143 THLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGDDK 222 (298)
T ss_pred HHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCCcc
Confidence 9999999999999999999999999888888999999999999986 5799999999999999999998874433222
Q ss_pred c--chHHHHHHHHHhC-CCHHHHHHHHHhhcC--CeEecCCCCHHHHHHhhcccCCCCCHHHHHHHHhhhc
Q 041263 225 L--KEAILQEIAGELN-KSPAQVALRWGLQSG--HSILPKSVNESRIKENFNLFDWSIPPKLFSRFSNIHQ 290 (318)
Q Consensus 225 ~--~~~~l~~la~~~~-~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~~~~~~L~~~~~~~l~~~~~ 290 (318)
+ -...+..+|+++| .|..+++++|++.+| ..+++|+.+++++++.+++++..|+.+++=+|-....
T Consensus 223 ~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~ 293 (298)
T COG4989 223 FQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAI 293 (298)
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhc
Confidence 2 3478999999999 799999999999999 5789999999999999999999999999998887764
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=3.3e-48 Score=346.87 Aligned_cols=276 Identities=22% Similarity=0.303 Sum_probs=235.1
Q ss_pred ccee--ccCCCccCccccccccC--------CcchHHHHHHHHHHcCCCEEeCCCCC--C-CHHHHHHHHHhhhhcCCcC
Q 041263 10 VYFE--LNTGAKIPSVGLGTWKA--------PPGEVGEAVIAAVKAGYRHIDCAHVY--D-NEKEVGAALKQFFSTGVVK 76 (318)
Q Consensus 10 ~~~~--~~tg~~vs~lglG~~~~--------~~~~~~~~l~~Al~~Gi~~~DtA~~Y--g-sE~~lG~al~~~~~~~~~~ 76 (318)
|-|+ ++||.++|.+|||||+. +.+.+.++|++|++.||||||||..| | ||..+|+||++. .
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~------~ 74 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG------Y 74 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc------c
Confidence 4556 89999999999999972 55778999999999999999999999 6 899999999996 7
Q ss_pred CCceEEEeccCCCC-CCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 041263 77 RDEMFITSKIWCCD-LAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGK 155 (318)
Q Consensus 77 R~~~~i~tK~~~~~-~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ 155 (318)
|++|+++||+.... -+.+.+++-++++|++||+||+|+|+||...... . ++ ....++++.+++++++|+
T Consensus 75 Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~-~------~k---~~~~g~~df~~kak~eGk 144 (391)
T COG1453 75 REKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTET-W------EK---IERLGVFDFLEKAKAEGK 144 (391)
T ss_pred cceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHH-H------HH---HHccChHHHHHHHHhcCc
Confidence 99999999997433 3578999999999999999999999999876521 1 11 112347999999999999
Q ss_pred eeEEEeeCCC-hHHHHHHHHhCCCCCeeEEeeecCCCCC----hHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHH
Q 041263 156 ARAIGVSNFS-TKKLKDLCSYAKVKPAVNQVECHPVWQQ----PALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAIL 230 (318)
Q Consensus 156 ir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~----~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l 230 (318)
||++|+|.|+ .+.+.+++.... ++++|+++|++++. .+.+++|.++|++|+.++|+.+|+|... ..+++
T Consensus 145 Ir~~GFSfHgs~e~~~~iv~a~~--~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~----vP~~~ 218 (391)
T COG1453 145 IRNAGFSFHGSTEVFKEIVDAYP--WDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN----VPEKL 218 (391)
T ss_pred EEEeeecCCCCHHHHHHHHhcCC--cceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC----CCHHH
Confidence 9999999999 566788877654 79999999999876 3799999999999999999998865321 24689
Q ss_pred HHHHHHhC--CCHHHHHHHHHhhcC--CeEecCCCCHHHHHHhhcccCC--C-CCHHHHHHHHhhhc------ccccccc
Q 041263 231 QEIAGELN--KSPAQVALRWGLQSG--HSILPKSVNESRIKENFNLFDW--S-IPPKLFSRFSNIHQ------QRLLRGT 297 (318)
Q Consensus 231 ~~la~~~~--~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~~~~~--~-L~~~~~~~l~~~~~------~~~~~~~ 297 (318)
++++++++ .||+.+|+||++++| .++++|+++++|++||++.++. | ||+++++.|+++.+ ...|++|
T Consensus 219 ~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~~~~~~v~Ct~C 298 (391)
T COG1453 219 EELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEIYRESLKVPCTGC 298 (391)
T ss_pred HHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 99999987 689999999999998 6889999999999999998874 4 99999999998877 2348888
Q ss_pred -cccccCCCCC
Q 041263 298 -FAVHETRSPY 307 (318)
Q Consensus 298 -~~~~~~~~~~ 307 (318)
+|-.||++..
T Consensus 299 ~yC~PCP~gIn 309 (391)
T COG1453 299 RYCLPCPSGIN 309 (391)
T ss_pred cccCcCCCCCC
Confidence 7888998754
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=6.1e-45 Score=311.94 Aligned_cols=266 Identities=24% Similarity=0.263 Sum_probs=219.3
Q ss_pred cccee--ccCCCccCcccccccc-------CCcchHHHHHHHHHHcCCCEEeCCCCCC---CHHHHHHHHHhhhhcCCcC
Q 041263 9 PVYFE--LNTGAKIPSVGLGTWK-------APPGEVGEAVIAAVKAGYRHIDCAHVYD---NEKEVGAALKQFFSTGVVK 76 (318)
Q Consensus 9 ~~~~~--~~tg~~vs~lglG~~~-------~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---sE~~lG~al~~~~~~~~~~ 76 (318)
.|.|+ |+||++||+||||+.. .+.++....+..|+..|||+|||++.|| ||..+|.++++ +|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~------vP 94 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKD------VP 94 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhh------CC
Confidence 46677 8999999999999963 3567777777889999999999999999 79999999998 59
Q ss_pred CCceEEEeccCC--------CCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 041263 77 RDEMFITSKIWC--------CDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAME 148 (318)
Q Consensus 77 R~~~~i~tK~~~--------~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 148 (318)
|+.+||+||++. +|++++.+++++++||+||++||+|++++|..+..... ...+.|++.+|+
T Consensus 95 R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~l----------d~vl~Etlp~Le 164 (342)
T KOG1576|consen 95 REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNL----------DIVLNETLPALE 164 (342)
T ss_pred hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccc----------cHHHHHHHHHHH
Confidence 999999999975 56788999999999999999999999999998764211 166899999999
Q ss_pred HHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeEE--eeecCCCCC-hHHHHHHHhcCcEEEEecCCCCCCCCCccccc
Q 041263 149 KLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQ--VECHPVWQQ-PALHEYCKSSGVHLTAYSPLGSPGSWVKGEIL 225 (318)
Q Consensus 149 ~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q--~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~ 225 (318)
+++++||||+||++.++.+.+.++++...-..+++- ++|++.+.. -..+++.+..|++|++-++++.|.|+..++.-
T Consensus 165 ~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~ 244 (342)
T KOG1576|consen 165 ELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSMGLLTNQGPPP 244 (342)
T ss_pred HHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHHHHhhcCCCCC
Confidence 999999999999999999999999877655555555 444444333 35677788999999999999999988653321
Q ss_pred c----------hHHHHHHHHHhCCCHHHHHHHHHhhcC--CeEecCCCCHHHHHHhhcccCCCCCHHHHHHHHhhhc
Q 041263 226 K----------EAILQEIAGELNKSPAQVALRWGLQSG--HSILPKSVNESRIKENFNLFDWSIPPKLFSRFSNIHQ 290 (318)
Q Consensus 226 ~----------~~~l~~la~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~~~~~~L~~~~~~~l~~~~~ 290 (318)
. ..+-.++|++.|+..+.+|+.|.++.+ .++++|+++.++++.|+++-...||..+-++...+.+
T Consensus 245 wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~~~r 321 (342)
T KOG1576|consen 245 WHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLRILR 321 (342)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHHHHH
Confidence 1 245677888899999999999999987 6899999999999999997777888733333333333
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.42 E-value=8e-07 Score=76.33 Aligned_cols=137 Identities=26% Similarity=0.328 Sum_probs=96.4
Q ss_pred CCCceEEEeccCCCCCCCChHHHHHHHHHHHhCC----CccceE------eecCCCCCCCCCC-------CC-CCCCCCC
Q 041263 76 KRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQL----DYIDLY------LIHWPFRTKPETR-------GF-EPDIMLP 137 (318)
Q Consensus 76 ~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~----d~iDl~------~lH~p~~~~~~~~-------~~-~~~~~~~ 137 (318)
.++++-+..|.+..++.-+++++..++-++-+-. ..+|.+ +.|.-+-..+..+ .+ +....--
T Consensus 73 ~~~E~si~vklf~ndh~~e~in~~eeelmkVf~~lh~v~~id~~st~~v~~~~~~~l~v~~lssv~ia~~sied~~n~~~ 152 (285)
T KOG3023|consen 73 KQEEYSIIVKLFFNDHENEDINKREEELMKVFYNLHMVFGIDFVSTLVVSFPHITFLKVSGLSSVNIAYDSIEDIPNQEI 152 (285)
T ss_pred cccccceeeEEeecccchhhhcHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccceeecccCccchhccCChhhhcchhhH
Confidence 4777888888877777777788777776654321 122222 1121100000000 00 0000001
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCC-ChHHHHHHHhcCcEEEEecC
Q 041263 138 LCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQ-QPALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~-~~~l~~~~~~~gi~v~a~~p 212 (318)
..+.+.|+.||+++.+|+|..||+|.|+..++++++..+.+.|.++|+++.-... .+++.++|.+++|.+..++-
T Consensus 153 e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHsD 228 (285)
T KOG3023|consen 153 ESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHSD 228 (285)
T ss_pred HHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecCC
Confidence 4467899999999999999999999999999999999999999999999876654 47999999999999999863
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=89.11 E-value=2.6 Score=35.81 Aligned_cols=107 Identities=10% Similarity=0.153 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHH
Q 041263 95 DVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCS 174 (318)
Q Consensus 95 ~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 174 (318)
-+...+++.|....-+.+|.+.+..-- +......+.|+++.+-|+-.-|++.||.-+....-+-
T Consensus 59 Viq~Dld~gL~~f~d~sFD~VIlsqtL----------------Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~ 122 (193)
T PF07021_consen 59 VIQGDLDEGLADFPDQSFDYVILSQTL----------------QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLL 122 (193)
T ss_pred EEECCHHHhHhhCCCCCccEEehHhHH----------------HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHH
Confidence 344455666777777777777765321 2223445668888888998889999999888766666
Q ss_pred hCCCCCeeEEeeecCCCCC-------hHHHHHHHhcCcEEEEecCCCCCC
Q 041263 175 YAKVKPAVNQVECHPVWQQ-------PALHEYCKSSGVHLTAYSPLGSPG 217 (318)
Q Consensus 175 ~~~~~~~~~q~~~~~~~~~-------~~l~~~~~~~gi~v~a~~pl~~g~ 217 (318)
..+-.|..-.++|.-++.+ .+..++|++.|+.|.-..++..+.
T Consensus 123 ~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 123 LRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred hcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 5566677777777666643 577889999999999999987654
No 20
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=85.82 E-value=24 Score=33.42 Aligned_cols=127 Identities=11% Similarity=0.073 Sum_probs=76.0
Q ss_pred ChHHHHHHHHH-----------HHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeeEEEe
Q 041263 94 EDVPKALSRSL-----------EHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSG-KARAIGV 161 (318)
Q Consensus 94 ~~i~~~ve~SL-----------~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGv 161 (318)
+.+++.++... +.+| .|++.||.-.......+ ....+..+..++..+.= .=--|+=
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d---------~~~~e~a~~vk~V~~av~vPLIL~g 195 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDD---------KSPSEAAKVLEDVLQAVDVPIVIGG 195 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccc---------cCHHHHHHHHHHHHHhCCCCEEEeC
Confidence 45666666654 4444 88999987543211110 44556777777764433 3223332
Q ss_pred e---CCChHHHHHHHHhCCC-CCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHh
Q 041263 162 S---NFSTKKLKDLCSYAKV-KPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGEL 237 (318)
Q Consensus 162 s---~~~~~~l~~~~~~~~~-~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~ 237 (318)
| ..+++.+++.++.++- +|.++-..... .-..+.+.|+++|..+++++|..-+ ....+.....++
T Consensus 196 sg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Din---------~ak~Ln~kL~~~ 264 (389)
T TIGR00381 196 SGNPEKDPLVLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDIN---------MQKTLNRYLLKR 264 (389)
T ss_pred CCCCcCCHHHHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcHH---------HHHHHHHHHHHc
Confidence 3 5678999999998754 56655444321 2257999999999999999988433 123333334456
Q ss_pred CCCHHH
Q 041263 238 NKSPAQ 243 (318)
Q Consensus 238 ~~s~~q 243 (318)
|+.+.+
T Consensus 265 Gv~~eD 270 (389)
T TIGR00381 265 GLMPRD 270 (389)
T ss_pred CCCHHH
Confidence 665444
No 21
>PRK08392 hypothetical protein; Provisional
Probab=84.16 E-value=26 Score=30.15 Aligned_cols=184 Identities=14% Similarity=0.143 Sum_probs=93.7
Q ss_pred chHHHHHHHHHHcCCCEEeCCCCCC--CHHHHHHHHHhhhhcCCcCCCceEE--EeccCCCCCCCChHHHHHHHHHHHhC
Q 041263 33 GEVGEAVIAAVKAGYRHIDCAHVYD--NEKEVGAALKQFFSTGVVKRDEMFI--TSKIWCCDLAPEDVPKALSRSLEHLQ 108 (318)
Q Consensus 33 ~~~~~~l~~Al~~Gi~~~DtA~~Yg--sE~~lG~al~~~~~~~~~~R~~~~i--~tK~~~~~~~~~~i~~~ve~SL~~Lg 108 (318)
....+.++.|.+.|++.+=.+++.- ....+-..++..-... .+.++.| ..-+... +.. ....++.+++
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~--~~~~i~il~GiE~~~~---~~~-~~~~~~~~~~-- 85 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWG--EESEIVVLAGIEANIT---PNG-VDITDDFAKK-- 85 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHh--hccCceEEEeEEeeec---CCc-chhHHHHHhh--
Confidence 4477899999999999886666642 1112222222210001 1223332 2323211 222 2333444443
Q ss_pred CCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCC-------C-hHHHHHHHHhCCCCC
Q 041263 109 LDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNF-------S-TKKLKDLCSYAKVKP 180 (318)
Q Consensus 109 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-------~-~~~l~~~~~~~~~~~ 180 (318)
.||+ +.-+|..... ......++.+.++.+.|.+.-+|=-.. . .+.++++++.+...=
T Consensus 86 ~D~v-I~SvH~~~~~--------------~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g 150 (215)
T PRK08392 86 LDYV-IASVHEWFGR--------------PEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG 150 (215)
T ss_pred CCEE-EEEeecCcCC--------------cHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC
Confidence 4555 6677843211 223567788888889988666653211 1 134444444332111
Q ss_pred eeEEeeecCCCCChHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCCHHHH
Q 041263 181 AVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQV 244 (318)
Q Consensus 181 ~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q~ 244 (318)
..+.++-....+..++++.|++.|+.++.-|-- ... ..+-.-+...+++++.|.++.++
T Consensus 151 ~~lEiNt~~~~p~~~~l~~~~~~G~~~~igSDA-H~~----~~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 151 KAFEISSRYRVPDLEFIRECIKRGIKLTFASDA-HRP----EDVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCCEEEEeCCC-CCh----HHCCcHHHHHHHHHHcCCCHHHe
Confidence 222222222334568999999999886554432 211 01111245677888888877663
No 22
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=84.07 E-value=12 Score=33.40 Aligned_cols=68 Identities=15% Similarity=0.033 Sum_probs=49.2
Q ss_pred HHHHHHHcCCeeEEEe-eCCChHHHHHHHHhCCCCCeeEEeeecCCCCC--hHHHHHHHhcCcEEEEecCCC
Q 041263 146 AMEKLYDSGKARAIGV-SNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQ--PALHEYCKSSGVHLTAYSPLG 214 (318)
Q Consensus 146 ~L~~l~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~pl~ 214 (318)
.|.+-.++|+. -+|+ ....-..+.+++..++.+++++=.+-++++.+ ..++..|+..|+..+++-|-.
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 35555566875 3554 33344456666777888888888888888766 478889999999999998873
No 23
>PRK08609 hypothetical protein; Provisional
Probab=83.11 E-value=54 Score=32.95 Aligned_cols=184 Identities=15% Similarity=0.132 Sum_probs=100.3
Q ss_pred chHHHHHHHHHHcCCCEEeCCCCCC--------CHHHHHHH---HHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHH
Q 041263 33 GEVGEAVIAAVKAGYRHIDCAHVYD--------NEKEVGAA---LKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALS 101 (318)
Q Consensus 33 ~~~~~~l~~Al~~Gi~~~DtA~~Yg--------sE~~lG~a---l~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve 101 (318)
....++++.|.+.|+.+|=.++|+. +...+-.. ++.. .+. ...=+++...-+.. .++....-.+
T Consensus 349 ~sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l-~~~-~~~i~Il~GiEv~i---~~~g~~d~~~ 423 (570)
T PRK08609 349 FSIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKAL-NEK-YPEIDILSGIEMDI---LPDGSLDYDD 423 (570)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHH-HHh-cCCCeEEEEEEEee---cCCcchhhcH
Confidence 4467899999999999987777752 22222222 1221 000 11113333333322 2223233334
Q ss_pred HHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeC------CC--hHHHHHHH
Q 041263 102 RSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSN------FS--TKKLKDLC 173 (318)
Q Consensus 102 ~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~------~~--~~~l~~~~ 173 (318)
..|+. .||+ +.-+|++.. .+..+.++.+.++.+.|.+.-||=-. .. ...+++++
T Consensus 424 ~~L~~--~D~v-I~SvH~~~~---------------~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~ 485 (570)
T PRK08609 424 EVLAE--LDYV-IAAIHSSFS---------------QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLI 485 (570)
T ss_pred HHHHh--hCEE-EEEeecCCC---------------CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHH
Confidence 45554 4665 777897532 34467788999999988877666332 11 23344444
Q ss_pred HhCCCCCeeEEeeecCCC--CChHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCCHHHH
Q 041263 174 SYAKVKPAVNQVECHPVW--QQPALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQV 244 (318)
Q Consensus 174 ~~~~~~~~~~q~~~~~~~--~~~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q~ 244 (318)
+.+...=.++|++-+++. ....++..|.+.|+.+..-|-- +.. ..+-.-+.-..+|++-+.++.++
T Consensus 486 ~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDA-H~~----~~l~~~~~~v~~ar~~~~~~~~v 553 (570)
T PRK08609 486 ELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAINTDA-HHT----EMLDDMKYGVATARKGWIQKDRV 553 (570)
T ss_pred HHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEEECCC-CCh----hhhCcHHHHHHHHHHcCCCHHHc
Confidence 442222256666665543 2367899999999975544432 321 12323345566777777766664
No 24
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.81 E-value=8.6 Score=36.52 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=50.9
Q ss_pred CcchHHHHHHHHHHcCCCEEeCCCCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHh--C
Q 041263 31 PPGEVGEAVIAAVKAGYRHIDCAHVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHL--Q 108 (318)
Q Consensus 31 ~~~~~~~~l~~Al~~Gi~~~DtA~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~L--g 108 (318)
+......++++|++.|++++|||.+.-....+....+ +..+.+..-+| ++|--..--.....+.+ .
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~---------~Agit~v~~~G---~dPGi~nv~a~~a~~~~~~~ 144 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAK---------KAGITAVLGCG---FDPGITNVLAAYAAKELFDE 144 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHH---------HcCeEEEcccC---cCcchHHHHHHHHHHHhhcc
Confidence 3344568899999999999999977655333333322 44555555554 33322222223333333 5
Q ss_pred CCccceEeecCCCCC
Q 041263 109 LDYIDLYLIHWPFRT 123 (318)
Q Consensus 109 ~d~iDl~~lH~p~~~ 123 (318)
+++||+|..+-|+..
T Consensus 145 i~si~iy~g~~g~~~ 159 (389)
T COG1748 145 IESIDIYVGGLGEHG 159 (389)
T ss_pred ccEEEEEEecCCCCC
Confidence 899999999988775
No 25
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=82.65 E-value=17 Score=32.78 Aligned_cols=102 Identities=12% Similarity=0.096 Sum_probs=67.9
Q ss_pred HHHHHHHcCCeeEEEe-eCCChHHHHHHHHhCCCCCeeEEeeecCCCCC--hHHHHHHHhcCcEEEEecCCCCCCCCCcc
Q 041263 146 AMEKLYDSGKARAIGV-SNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQ--PALHEYCKSSGVHLTAYSPLGSPGSWVKG 222 (318)
Q Consensus 146 ~L~~l~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~g~l~~~~ 222 (318)
.|.+..++|+.- +|+ ....-..+.+++..++.++.++=.+-++++.. ..++..++..|+..+++-|-..
T Consensus 8 ~lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~------- 79 (267)
T PRK10128 8 PFKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS------- 79 (267)
T ss_pred HHHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC-------
Confidence 355666668764 443 34444456666677788888888888888766 4688889999999999888632
Q ss_pred cccchHHHHHHHHHhCCCHHHHHHHHHhhcC--CeEecCCCCHHHHHHhhcccCC
Q 041263 223 EILKEAILQEIAGELNKSPAQVALRWGLQSG--HSILPKSVNESRIKENFNLFDW 275 (318)
Q Consensus 223 ~~~~~~~l~~la~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~~~~~ 275 (318)
...++.+|..| ..++|-..|.++.++.+++..+
T Consensus 80 --------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 --------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred --------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 12345556655 3555666666666666666655
No 26
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=81.59 E-value=15 Score=33.91 Aligned_cols=116 Identities=21% Similarity=0.203 Sum_probs=68.3
Q ss_pred HHHHhCCCccceEeecC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeE-EEeeCC---ChHHHHHHHHhCC
Q 041263 103 SLEHLQLDYIDLYLIHW-PFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARA-IGVSNF---STKKLKDLCSYAK 177 (318)
Q Consensus 103 SL~~Lg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~-iGvs~~---~~~~l~~~~~~~~ 177 (318)
.-+.+|.|+||+-+.-. |+..+ ...++..+.++...+.=.+=- |..|.. +++.+++.++.++
T Consensus 84 q~~~~GAd~Idl~~~s~dp~~~d-------------~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~ 150 (319)
T PRK04452 84 CVEEYGADMITLHLISTDPNGKD-------------KSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAE 150 (319)
T ss_pred HHHHhCCCEEEEECCCCCccccc-------------chHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhC
Confidence 34578888888775322 22111 223344444444433322222 555532 6889999999876
Q ss_pred C-CCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCCHHH
Q 041263 178 V-KPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQ 243 (318)
Q Consensus 178 ~-~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q 243 (318)
- ++.++-.... .-+.+.+.|+++|..|++.+|. ++-....+-..+.++|+++.+
T Consensus 151 g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~---------Dln~ak~L~~~l~~~Gi~~ed 205 (319)
T PRK04452 151 GERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPL---------DINLAKQLNILLTELGVPRER 205 (319)
T ss_pred CCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHH---------HHHHHHHHHHHHHHcCCCHHH
Confidence 3 3554444321 1257999999999999999877 333335566666677775544
No 27
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=81.33 E-value=51 Score=31.39 Aligned_cols=153 Identities=19% Similarity=0.176 Sum_probs=88.2
Q ss_pred CCcchHHHHHHHHHHcCCCEE-eCCCCCCCHHHHHHHHHhhh--hcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHH
Q 041263 30 APPGEVGEAVIAAVKAGYRHI-DCAHVYDNEKEVGAALKQFF--STGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEH 106 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~-DtA~~YgsE~~lG~al~~~~--~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~ 106 (318)
.+.+.-.+-++.|++.|-..+ |.+ ..|.-..+-+.+-+.. .-|.+|=-+.++-..-...+++++.+-+.+|+..+
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLS-tGgdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~- 151 (423)
T TIGR00190 74 SDIEEEVEKALIAIKYGADTVMDLS-TGGDLDEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAK- 151 (423)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHH-
Confidence 344555666889999998755 554 3444333333222210 00001100111000001234566777777776655
Q ss_pred hCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeEEee
Q 041263 107 LQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVE 186 (318)
Q Consensus 107 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~ 186 (318)
+-+|.+-+|.- -..+.++.++++|. ..|+-+-...-+...+...+ .
T Consensus 152 ---dGVDfmTiH~G---------------------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~~--------~ 197 (423)
T TIGR00190 152 ---DGVDFMTIHAG---------------------VLLEYVERLKRSGR--ITGIVSRGGAILAAWMLHHH--------K 197 (423)
T ss_pred ---hCCCEEEEccc---------------------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHcC--------C
Confidence 45889999973 24578999999995 56777766666655544432 2
Q ss_pred ecCCCCC-hHHHHHHHhcCcEEEEecCCCCCCC
Q 041263 187 CHPVWQQ-PALHEYCKSSGVHLTAYSPLGSPGS 218 (318)
Q Consensus 187 ~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~g~l 218 (318)
-||+..+ .++++.|+++++.+.---.|.-|.+
T Consensus 198 ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i 230 (423)
T TIGR00190 198 ENPLYKNFDYILEIAKEYDVTLSLGDGLRPGCI 230 (423)
T ss_pred cCchHHHHHHHHHHHHHhCeeeeccCCcCCCcc
Confidence 3666655 5799999999998877666655543
No 28
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=79.42 E-value=20 Score=31.84 Aligned_cols=67 Identities=13% Similarity=-0.010 Sum_probs=47.1
Q ss_pred HHHHHHcCCeeEEEe-eCCChHHHHHHHHhCCCCCeeEEeeecCCCCC--hHHHHHHHhcCcEEEEecCCC
Q 041263 147 MEKLYDSGKARAIGV-SNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQ--PALHEYCKSSGVHLTAYSPLG 214 (318)
Q Consensus 147 L~~l~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~pl~ 214 (318)
|.+..++|+.- +|+ .+..-..+.+++..++.+++++=.+-++++.+ ..++..++..|+..+++-|-.
T Consensus 3 lk~~l~~g~~~-~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 3 FRQDLLARETL-IGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HHHHHHcCCce-EEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 33444557643 553 34444456666677888888888888888766 478888999999999998773
No 29
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=79.01 E-value=55 Score=30.42 Aligned_cols=149 Identities=14% Similarity=0.181 Sum_probs=87.7
Q ss_pred CcchHHHHHHHHHHcCCCEEeC--CCCCC------CHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHH
Q 041263 31 PPGEVGEAVIAAVKAGYRHIDC--AHVYD------NEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSR 102 (318)
Q Consensus 31 ~~~~~~~~l~~Al~~Gi~~~Dt--A~~Yg------sE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~ 102 (318)
+.++..+..+++.+.|++.|.. +..|. -...+=+++++. -.+++.|...... .++. +...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~------~g~~~~l~vDaN~-~~~~----~~a~~ 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA------VGPDVDLMVDANG-RWDL----AEAIR 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh------hCCCCEEEEECCC-CCCH----HHHHH
Confidence 4566777778888999999875 33331 011112344543 2345666665521 2222 22223
Q ss_pred HHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCee-EEEeeCCChHHHHHHHHhCCCCCe
Q 041263 103 SLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKAR-AIGVSNFSTKKLKDLCSYAKVKPA 181 (318)
Q Consensus 103 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~ 181 (318)
-+++|. ..++.++..|... +-++.+.+|++.-.+. ..|=|.++++.+.++++... .+
T Consensus 208 ~~~~l~--~~~i~~iEqP~~~------------------~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~--~d 265 (357)
T cd03316 208 LARALE--EYDLFWFEEPVPP------------------DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGA--VD 265 (357)
T ss_pred HHHHhC--ccCCCeEcCCCCc------------------cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCC--CC
Confidence 334443 2455666666432 1356777888775555 44456678899998887654 37
Q ss_pred eEEeeecCCC---CChHHHHHHHhcCcEEEEecC
Q 041263 182 VNQVECHPVW---QQPALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 182 ~~q~~~~~~~---~~~~l~~~~~~~gi~v~a~~p 212 (318)
++|+.....- +-..+...|+++|+.++.++.
T Consensus 266 ~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 266 IIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred EEecCccccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 7777654432 225789999999999887763
No 30
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=75.47 E-value=14 Score=33.35 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=79.3
Q ss_pred HHHHHHHHHH--HcCCeeEEEeeCCChHHHHHHHHhCCCC------CeeEEeeecCCCCChHHHHHHHhcCcEEEEecCC
Q 041263 142 ETWAAMEKLY--DSGKARAIGVSNFSTKKLKDLCSYAKVK------PAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 142 ~~~~~L~~l~--~~G~ir~iGvs~~~~~~l~~~~~~~~~~------~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 213 (318)
+..+.++.|. .+.++.++-=.+.+.+...++.+....+ +..+-+-|-..+++..+.+.+.+-++-++..++-
T Consensus 144 e~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~n 223 (294)
T COG0761 144 ESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKN 223 (294)
T ss_pred ecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCC
Confidence 4445555553 3335555554555566655555543221 2222222333345577889999999999998888
Q ss_pred CCCCCCCcccccchHHHHHHHHHhCC------CHHHHHHHHHhhcC-CeEecCCCCHHHHHHhh
Q 041263 214 GSPGSWVKGEILKEAILQEIAGELNK------SPAQVALRWGLQSG-HSILPKSVNESRIKENF 270 (318)
Q Consensus 214 ~~g~l~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~-~~vl~g~~~~~~l~enl 270 (318)
.+. ..+|.++|+++|. ++.++-..|..... +.+-.|+|+|+.+-+++
T Consensus 224 SSN----------s~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 224 SSN----------SNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEV 277 (294)
T ss_pred Ccc----------HHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHH
Confidence 654 3689999999986 67888888888765 67889999999887764
No 31
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=72.87 E-value=20 Score=32.46 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=74.7
Q ss_pred HHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCCCC------CeeEEeeecCCCCChHHHHHHHhcCcEEEEecCCCCCCC
Q 041263 145 AAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAKVK------PAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPGS 218 (318)
Q Consensus 145 ~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~------~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~l 218 (318)
+.++.|....++..+-=.+.+.+.+..+.+...-+ +..+.+-+-..+|+..+.+++++-++-++..+.-.+.
T Consensus 145 ~d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsN-- 222 (280)
T TIGR00216 145 EDLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSN-- 222 (280)
T ss_pred HHHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCch--
Confidence 34555544555555555666666666554443211 1111111222234467899999999988887665433
Q ss_pred CCcccccchHHHHHHHHHhCC------CHHHHHHHHHhhcC-CeEecCCCCHHHHHHh
Q 041263 219 WVKGEILKEAILQEIAGELNK------SPAQVALRWGLQSG-HSILPKSVNESRIKEN 269 (318)
Q Consensus 219 ~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~-~~vl~g~~~~~~l~en 269 (318)
...|.++|+++|. ++.++-..|.-... +.+..|+|+|+.+-+.
T Consensus 223 --------T~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~e 272 (280)
T TIGR00216 223 --------TTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEE 272 (280)
T ss_pred --------HHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHH
Confidence 3689999999983 78999999987655 6788999999977554
No 32
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=72.73 E-value=45 Score=29.84 Aligned_cols=100 Identities=12% Similarity=0.027 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHH
Q 041263 94 EDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLC 173 (318)
Q Consensus 94 ~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (318)
+.+.+..++. ..-|.+.||+=.--.+ . ...+.....++.+++.-.+ -|.+-+++++.+++++
T Consensus 25 ~~i~~~A~~~-~~~GAdiIDVg~~~~~--~--------------eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL 86 (261)
T PRK07535 25 AFIQKLALKQ-AEAGADYLDVNAGTAV--E--------------EEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGL 86 (261)
T ss_pred HHHHHHHHHH-HHCCCCEEEECCCCCc--h--------------hHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHH
Confidence 3444444433 3668899998743111 0 2234455666666654333 4889999999999999
Q ss_pred HhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecC
Q 041263 174 SYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 174 ~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~p 212 (318)
+...-.+.+|-+.... .+.+.+++.++++|..+++..-
T Consensus 87 ~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 87 KVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred HhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEec
Confidence 9754334444433211 2246789999999999998653
No 33
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=72.59 E-value=20 Score=31.70 Aligned_cols=115 Identities=10% Similarity=0.070 Sum_probs=60.5
Q ss_pred cCCcchHHHHHHHHHHcCCCEEeCCCCCCC---------------------HHHHHHHHHhhhhcCCcCCCceEEEeccC
Q 041263 29 KAPPGEVGEAVIAAVKAGYRHIDCAHVYDN---------------------EKEVGAALKQFFSTGVVKRDEMFITSKIW 87 (318)
Q Consensus 29 ~~~~~~~~~~l~~Al~~Gi~~~DtA~~Ygs---------------------E~~lG~al~~~~~~~~~~R~~~~i~tK~~ 87 (318)
..+.++..++.+.+-+.||.||=|.-...+ -.+| +.+.+ ....++|+|-..
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL-~~~A~-------tgkPvIlSTG~s 123 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLL-EYIAK-------TGKPVILSTGMS 123 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHH-HHHHT-------T-S-EEEE-TT-
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHH-HHHHH-------hCCcEEEECCCC
Confidence 377888999999999999999976533211 1111 11121 345677777652
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHcCCeeEEEeeCCCh
Q 041263 88 CCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPET-WAAMEKLYDSGKARAIGVSNFST 166 (318)
Q Consensus 88 ~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~l~~~G~ir~iGvs~~~~ 166 (318)
+.+.|.++++.-.++ ..-++.++|+...+- .+++++ +..+..|++.=- --||+|.|+.
T Consensus 124 ----tl~EI~~Av~~~~~~---~~~~l~llHC~s~YP-------------~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~ 182 (241)
T PF03102_consen 124 ----TLEEIERAVEVLREA---GNEDLVLLHCVSSYP-------------TPPEDVNLRVIPTLKERFG-VPVGYSDHTD 182 (241)
T ss_dssp -----HHHHHHHHHHHHHH---CT--EEEEEE-SSSS---------------GGG--TTHHHHHHHHST-SEEEEEE-SS
T ss_pred ----CHHHHHHHHHHHHhc---CCCCEEEEecCCCCC-------------CChHHcChHHHHHHHHhcC-CCEEeCCCCC
Confidence 334555555544233 348999999976542 333332 456666664422 4689999997
Q ss_pred HHHHHH
Q 041263 167 KKLKDL 172 (318)
Q Consensus 167 ~~l~~~ 172 (318)
....-+
T Consensus 183 g~~~~~ 188 (241)
T PF03102_consen 183 GIEAPI 188 (241)
T ss_dssp SSHHHH
T ss_pred CcHHHH
Confidence 554333
No 34
>PRK13796 GTPase YqeH; Provisional
Probab=72.00 E-value=53 Score=30.92 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=74.1
Q ss_pred CCcchHHHHHHHHHHcC---CCEEeCCCCCCC-HHHHHHHHHhhhhcCCcCCCceEEEeccCCC--CCCCChHHHHHHHH
Q 041263 30 APPGEVGEAVIAAVKAG---YRHIDCAHVYDN-EKEVGAALKQFFSTGVVKRDEMFITSKIWCC--DLAPEDVPKALSRS 103 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~G---i~~~DtA~~Ygs-E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~--~~~~~~i~~~ve~S 103 (318)
.+.++..++++..-+.- +-.+|..+.-++ ...+.+... .+.-++|.+|+-.. ....+.+++-++.-
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~--------~kpviLViNK~DLl~~~~~~~~i~~~l~~~ 125 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG--------NNPVLLVGNKADLLPKSVKKNKVKNWLRQE 125 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC--------CCCEEEEEEchhhCCCccCHHHHHHHHHHH
Confidence 34456667777766555 446787665443 222222221 35678899997321 11223455555555
Q ss_pred HHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHH
Q 041263 104 LEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLC 173 (318)
Q Consensus 104 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (318)
.+.+|....|++++-.-.. ....+.++.+.+..+.+.+-.+|.+|.....+...+
T Consensus 126 ~k~~g~~~~~v~~vSAk~g---------------~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 126 AKELGLRPVDVVLISAQKG---------------HGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred HHhcCCCcCcEEEEECCCC---------------CCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 6667765446666543221 456788888888878888999999999987764443
No 35
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=71.64 E-value=97 Score=29.68 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=89.4
Q ss_pred CCcchHHHHHHHHHHcCCCEE-eCCCCCCCHHHHHHHHHhhh--hcCCcCCCceEEEe--cc-CCCCCCCChHHHHHHHH
Q 041263 30 APPGEVGEAVIAAVKAGYRHI-DCAHVYDNEKEVGAALKQFF--STGVVKRDEMFITS--KI-WCCDLAPEDVPKALSRS 103 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~-DtA~~YgsE~~lG~al~~~~--~~~~~~R~~~~i~t--K~-~~~~~~~~~i~~~ve~S 103 (318)
.+.+.-.+-++.|.+.|-..+ |.+ ..|.-..+-+.+-+.. .-|.+|=-+.++-. |- ...+.+++.+-..+|+.
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLS-tggdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ie~q 152 (431)
T PRK13352 74 SDIEEELEKAKVAVKYGADTIMDLS-TGGDLDEIRRAIIEASPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFDVIEKQ 152 (431)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHHcCCCCCcChhHHHHHHHHHhcCCChhhCCHHHHHHHHHHH
Confidence 444555667889999998755 554 3343222322222210 00000100000000 10 12346667777777766
Q ss_pred HHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeE
Q 041263 104 LEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVN 183 (318)
Q Consensus 104 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~ 183 (318)
.+ +-+|.+-+|.-- ..+.++.++++|. -.|+-+-...-+...+...+
T Consensus 153 a~----~GVDfmTiHcGi---------------------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~------ 199 (431)
T PRK13352 153 AK----DGVDFMTIHCGV---------------------TRETLERLKKSGR--IMGIVSRGGSFLAAWMLHNN------ 199 (431)
T ss_pred HH----hCCCEEEEccch---------------------hHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcC------
Confidence 55 458999999731 3478999999885 56777766666655544322
Q ss_pred EeeecCCCCC-hHHHHHHHhcCcEEEEecCCCCCCCC
Q 041263 184 QVECHPVWQQ-PALHEYCKSSGVHLTAYSPLGSPGSW 219 (318)
Q Consensus 184 q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~g~l~ 219 (318)
.-||+..+ .++++.|++++|.+.---.|.-|.+.
T Consensus 200 --~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~ 234 (431)
T PRK13352 200 --KENPLYEHFDYLLEILKEYDVTLSLGDGLRPGCIA 234 (431)
T ss_pred --CcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccc
Confidence 33666666 68999999999998876666555443
No 36
>PRK07945 hypothetical protein; Provisional
Probab=71.56 E-value=87 Score=29.12 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=19.4
Q ss_pred cchHHHHHHHHHHcCCCEEeCCCC
Q 041263 32 PGEVGEAVIAAVKAGYRHIDCAHV 55 (318)
Q Consensus 32 ~~~~~~~l~~Al~~Gi~~~DtA~~ 55 (318)
.....+++.+|.+.|+..+=.++|
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH 133 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDH 133 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCC
Confidence 455789999999999998755555
No 37
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=71.42 E-value=68 Score=29.72 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=69.1
Q ss_pred CCcchHHHHHHHHHHcCCCEEeCCCCCCC---------------------HHHHHHHHHhhhhcCCcCCCceEEEeccCC
Q 041263 30 APPGEVGEAVIAAVKAGYRHIDCAHVYDN---------------------EKEVGAALKQFFSTGVVKRDEMFITSKIWC 88 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Ygs---------------------E~~lG~al~~~~~~~~~~R~~~~i~tK~~~ 88 (318)
.+.+.-.++.+.|-+.|+-+|=|--.+.+ ..+|-...+ .-..+.++|-..
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--------~~kPiIlSTGma- 157 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--------KGKPIILSTGMA- 157 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--------cCCCEEEEcccc-
Confidence 55566778888999999999865433321 222222222 134777777762
Q ss_pred CCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHcCCeeEEEeeCCChH
Q 041263 89 CDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPET-WAAMEKLYDSGKARAIGVSNFSTK 167 (318)
Q Consensus 89 ~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~l~~~G~ir~iGvs~~~~~ 167 (318)
+-+.+.++++... +-|. .|+.+||+...+. .+.+++ +.+|-.|.+.= ---||+|.|+..
T Consensus 158 ---~~~ei~~av~~~r-~~g~--~~i~LLhC~s~YP-------------ap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g 217 (347)
T COG2089 158 ---TIEEIEEAVAILR-ENGN--PDIALLHCTSAYP-------------APFEDVNLKAIPKLAEAF-NAIVGLSDHTLG 217 (347)
T ss_pred ---cHHHHHHHHHHHH-hcCC--CCeEEEEecCCCC-------------CCHHHhhHHHHHHHHHHh-CCccccccCccc
Confidence 3456666665433 3343 4999999876542 444443 45555555443 335999999977
Q ss_pred HHHHHHH
Q 041263 168 KLKDLCS 174 (318)
Q Consensus 168 ~l~~~~~ 174 (318)
.+.-+..
T Consensus 218 ~~a~l~A 224 (347)
T COG2089 218 ILAPLAA 224 (347)
T ss_pred hhHHHHH
Confidence 5544433
No 38
>PRK06361 hypothetical protein; Provisional
Probab=70.93 E-value=66 Score=27.44 Aligned_cols=183 Identities=13% Similarity=0.139 Sum_probs=95.3
Q ss_pred chHHHHHHHHHHcCCCEEeCCCCCC--C-HHH---HHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHH
Q 041263 33 GEVGEAVIAAVKAGYRHIDCAHVYD--N-EKE---VGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEH 106 (318)
Q Consensus 33 ~~~~~~l~~Al~~Gi~~~DtA~~Yg--s-E~~---lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~ 106 (318)
....+++++|.+.|+..|=.+++.. + ... +-+..++. ....+=+++...-+.. ..++. ...+.+.+++
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~---~~~~~i~v~~GiE~~~--~~~~~-~~~~~~~~~~ 83 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEEL---ELYWDIEVIPGVELTH--VPPKL-IPKLAKKARD 83 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHH---hhcCCCEEEEEEEEcc--cCchh-hchHHHHHHH
Confidence 4578999999999999887776653 1 111 11111221 0001122333333321 22223 3334455556
Q ss_pred hCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeEEee
Q 041263 107 LQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVE 186 (318)
Q Consensus 107 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~ 186 (318)
++ +|++.+|......+ .. . ..-.++.+.|.+.-+|=-..-...+.+++...++ .+.++
T Consensus 84 ~~---~~~~svH~~~~~~~------------~~---~-~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~---~lEin 141 (212)
T PRK06361 84 LG---AEIVVVHGETIVEP------------VE---E-GTNLAAIECEDVDILAHPGLITEEEAELAAENGV---FLEIT 141 (212)
T ss_pred CC---CEEEEECCCCcchh------------hh---h-hhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCe---EEEEE
Confidence 65 66668994322110 10 0 1114567788766555322211222233333332 23332
Q ss_pred ecC--CCCChHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCCHHHHHHHH
Q 041263 187 CHP--VWQQPALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQVALRW 248 (318)
Q Consensus 187 ~~~--~~~~~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~ 248 (318)
... ......+++.+++.|+.++..|....- .++...+.+..++++.|.+..++--.+
T Consensus 142 ~~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~~-----~d~~~~~~~~~i~~~~gl~~~~v~~~~ 200 (212)
T PRK06361 142 ARKGHSLTNGHVARIAREAGAPLVINTDTHAP-----SDLITYEFARKVALGAGLTEKELEEAL 200 (212)
T ss_pred CCCCcccchHHHHHHHHHhCCcEEEECCCCCH-----HHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 211 122367999999999999888877422 244445678888888888888765444
No 39
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=70.12 E-value=63 Score=28.95 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCC---hHHHHH
Q 041263 95 DVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFS---TKKLKD 171 (318)
Q Consensus 95 ~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~---~~~l~~ 171 (318)
.-+..+-+.|.++|+++|++-+............. ....+.++.+..+.+ +..+..+++... .+.+..
T Consensus 20 ~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~--------~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~ 90 (266)
T cd07944 20 EFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSA--------FCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEP 90 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEeecCCCCccccCCCcc--------CCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHH
Confidence 55667777899999999999865543211111100 222556666666553 346666666544 344443
Q ss_pred HHHhCCCCCeeEEeee--cCCCCChHHHHHHHhcCcEEEEe
Q 041263 172 LCSYAKVKPAVNQVEC--HPVWQQPALHEYCKSSGVHLTAY 210 (318)
Q Consensus 172 ~~~~~~~~~~~~q~~~--~~~~~~~~l~~~~~~~gi~v~a~ 210 (318)
+.+ .++ +.+.+.+ +-+..-.+.+++++++|+.|...
T Consensus 91 a~~-~gv--~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 91 ASG-SVV--DMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred Hhc-CCc--CEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 322 233 4433332 22222257888899999876644
No 40
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=69.78 E-value=89 Score=28.52 Aligned_cols=149 Identities=17% Similarity=0.151 Sum_probs=88.5
Q ss_pred CcchHHHHHHHHHHcCCCEEeCCCCCCCHH--HHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhC
Q 041263 31 PPGEVGEAVIAAVKAGYRHIDCAHVYDNEK--EVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQ 108 (318)
Q Consensus 31 ~~~~~~~~l~~Al~~Gi~~~DtA~~YgsE~--~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg 108 (318)
++++..+.++.+.+.|++.|+.--.-..+. ..=+++++. .. ++-|.-+... .++.+. ...+-+.|+.+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~-----~g--~~~l~vD~n~-~~~~~~-A~~~~~~l~~~- 203 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA-----AP--DARLRVDANQ-GWTPEE-AVELLRELAEL- 203 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh-----CC--CCeEEEeCCC-CcCHHH-HHHHHHHHHhc-
Confidence 456667778888899999998642111121 122344443 22 5667766632 233322 22333344444
Q ss_pred CCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCee-EEEeeCCChHHHHHHHHhCCCCCeeEEeee
Q 041263 109 LDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKAR-AIGVSNFSTKKLKDLCSYAKVKPAVNQVEC 187 (318)
Q Consensus 109 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~ 187 (318)
++.++-.|-.. .-++.+.+|++...|. ..|=+-++++.+..+++.... +++|...
T Consensus 204 ----~l~~iEeP~~~------------------~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~--d~v~~~~ 259 (316)
T cd03319 204 ----GVELIEQPVPA------------------GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAY--DGINIKL 259 (316)
T ss_pred ----CCCEEECCCCC------------------CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCC--CEEEEec
Confidence 44444444321 1256778888877666 345556778888888876544 7788775
Q ss_pred cCCCC---ChHHHHHHHhcCcEEEEecCC
Q 041263 188 HPVWQ---QPALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 188 ~~~~~---~~~l~~~~~~~gi~v~a~~pl 213 (318)
...-- -..+..+|+++|+.++.++-+
T Consensus 260 ~~~GGi~~~~~~~~~a~~~gi~~~~~~~~ 288 (316)
T cd03319 260 MKTGGLTEALRIADLARAAGLKVMVGCMV 288 (316)
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEECch
Confidence 55422 257889999999999988655
No 41
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=69.54 E-value=93 Score=28.63 Aligned_cols=145 Identities=10% Similarity=0.047 Sum_probs=85.6
Q ss_pred ccccccccCCcchHHHHHHHHHHcCCCEEeCC---C-----CC--C-----CHHHHHHHHHhhhhcCCcCCCceEEEecc
Q 041263 22 SVGLGTWKAPPGEVGEAVIAAVKAGYRHIDCA---H-----VY--D-----NEKEVGAALKQFFSTGVVKRDEMFITSKI 86 (318)
Q Consensus 22 ~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DtA---~-----~Y--g-----sE~~lG~al~~~~~~~~~~R~~~~i~tK~ 86 (318)
++++-.+..++++..+....+.+.|+..||-- + .| | .-+.+.+.++.... . ..+++-|+.|+
T Consensus 64 p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~-~--~~~~~pVsvKi 140 (312)
T PRK10550 64 LVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMRE-A--VPAHLPVTVKV 140 (312)
T ss_pred cEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHH-h--cCCCcceEEEE
Confidence 35555556677777777788889999999831 1 13 3 24455555554310 1 12246788886
Q ss_pred CCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCC-C
Q 041263 87 WCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNF-S 165 (318)
Q Consensus 87 ~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~ 165 (318)
.....+.+. ...+-+.|+..| +|.+-+|.-.... . +..+ .--|+...++++.-.|-=||..+. +
T Consensus 141 R~g~~~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~-~---------y~g~-~~~~~~i~~ik~~~~iPVi~nGdI~t 205 (312)
T PRK10550 141 RLGWDSGER-KFEIADAVQQAG---ATELVVHGRTKED-G---------YRAE-HINWQAIGEIRQRLTIPVIANGEIWD 205 (312)
T ss_pred ECCCCCchH-HHHHHHHHHhcC---CCEEEECCCCCcc-C---------CCCC-cccHHHHHHHHhhcCCcEEEeCCcCC
Confidence 432111222 235555566666 6777888643221 1 0010 013678888888878888888876 5
Q ss_pred hHHHHHHHHhCCCCCeeEEee
Q 041263 166 TKKLKDLCSYAKVKPAVNQVE 186 (318)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~q~~ 186 (318)
+++..++++..+. +.+++-
T Consensus 206 ~~da~~~l~~~g~--DgVmiG 224 (312)
T PRK10550 206 WQSAQQCMAITGC--DAVMIG 224 (312)
T ss_pred HHHHHHHHhccCC--CEEEEc
Confidence 8888888876554 666554
No 42
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=69.41 E-value=77 Score=27.66 Aligned_cols=171 Identities=11% Similarity=0.034 Sum_probs=89.2
Q ss_pred cchHHHHHHHHHHcCCCEEeCCCCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCc
Q 041263 32 PGEVGEAVIAAVKAGYRHIDCAHVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDY 111 (318)
Q Consensus 32 ~~~~~~~l~~Al~~Gi~~~DtA~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~ 111 (318)
.....+++..|.+.|+..|=.+++...........+.. . ++-|-+-+-.....++ .++..+++. .+.
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~------~--~i~Il~GiEi~~~~~~----~~~~~~~~~-~~~ 81 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDL------L--GFEIFRGVEIVASNPS----KLRGLVGKF-RKK 81 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHh------c--CCcEEeeEEEecCCHH----HHHHHHHhc-cCc
Confidence 45678999999999999886666643110000111111 1 2333222211111122 233333342 235
Q ss_pred cceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCC---C---hHHHHHHHHhCCCCCeeEEe
Q 041263 112 IDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNF---S---TKKLKDLCSYAKVKPAVNQV 185 (318)
Q Consensus 112 iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~---~---~~~l~~~~~~~~~~~~~~q~ 185 (318)
+|++.+| |. . + +......+.+.|.-||--.. . ...+.++....+ ..+.+
T Consensus 82 ~d~v~v~-~~-----------------~-~---~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g---v~lEI 136 (237)
T PRK00912 82 VDVLAVH-GG-----------------D-E---KVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN---VAIEF 136 (237)
T ss_pred ccEEEEe-CC-----------------C-H---HHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC---eEEEE
Confidence 7888888 21 1 1 12245778888888876532 1 112222323223 45556
Q ss_pred eecCCCC------------ChHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCCHHHHH
Q 041263 186 ECHPVWQ------------QPALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQVA 245 (318)
Q Consensus 186 ~~~~~~~------------~~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q~a 245 (318)
+++++.. ...++..|++.|+.++.-|--..- ..+-.......++++.|.+..++-
T Consensus 137 n~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~~-----~~l~~~~~~~~l~~~~Gl~~~~~~ 203 (237)
T PRK00912 137 NLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMSC-----YDLRSPREMIALAELFGMEEDEAL 203 (237)
T ss_pred EchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcc-----cccCCHHHHHHHHHHcCCCHHHHH
Confidence 6654321 146889999999888765432111 133344667888888887766643
No 43
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=69.17 E-value=24 Score=32.05 Aligned_cols=113 Identities=15% Similarity=0.087 Sum_probs=72.0
Q ss_pred HHHHHHcCCeeEEEeeCCChHHHHHHHHhCCC---CCe-eEEeeecCCCCChHHHHHHHhcCcEEEEecCCCCCCCCCcc
Q 041263 147 MEKLYDSGKARAIGVSNFSTKKLKDLCSYAKV---KPA-VNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPGSWVKG 222 (318)
Q Consensus 147 L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~---~~~-~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~l~~~~ 222 (318)
++.|.-..++..+-=.+.+.+.+..+.+...- ... .+.+-+-..+++..+.+++++-++-++..+.-.+.
T Consensus 150 ~~~l~~~~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsN------ 223 (281)
T PRK12360 150 VENIPFLDKACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSSN------ 223 (281)
T ss_pred HhhCccccCEEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCcc------
Confidence 34433334444444456666666655554321 111 11111122234467889999999998887766443
Q ss_pred cccchHHHHHHHHHhCC------CHHHHHHHHHhhcC-CeEecCCCCHHHHHHh
Q 041263 223 EILKEAILQEIAGELNK------SPAQVALRWGLQSG-HSILPKSVNESRIKEN 269 (318)
Q Consensus 223 ~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~-~~vl~g~~~~~~l~en 269 (318)
...|.++|++.+. ++.++-..|..... +.+..|+|+|+.+-+.
T Consensus 224 ----T~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~e 273 (281)
T PRK12360 224 ----TQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEE 273 (281)
T ss_pred ----HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHH
Confidence 3679999999874 78899999987665 6788999999977554
No 44
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=67.72 E-value=93 Score=27.95 Aligned_cols=139 Identities=12% Similarity=0.032 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEeeCCC-h------HHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEe
Q 041263 138 LCLPETWAAMEKLYDSGKARAIGVSNFS-T------KKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAY 210 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iGvs~~~-~------~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~ 210 (318)
.+...+++.+++.++++.---|++-.|- + +.+.+.++.+++ +-+-+.=-|.....++.+.|+++||..+-.
T Consensus 76 ~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gv--dGlivpDLP~ee~~~~~~~~~~~gi~~I~l 153 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGV--DGLLVPDLPPEESDELLKAAEKHGIDPIFL 153 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCC--CEEEeCCCChHHHHHHHHHHHHcCCcEEEE
Confidence 5567777888888766543334443322 1 222222333333 444443333444467888899999887765
Q ss_pred cCCCCCCCCCcccccchHHHHHHHHHh----------CCCHHHHH--------HHHHhhc---CCeEecCCCCHHHHHHh
Q 041263 211 SPLGSPGSWVKGEILKEAILQEIAGEL----------NKSPAQVA--------LRWGLQS---GHSILPKSVNESRIKEN 269 (318)
Q Consensus 211 ~pl~~g~l~~~~~~~~~~~l~~la~~~----------~~s~~q~a--------l~~~l~~---~~~vl~g~~~~~~l~en 269 (318)
-+-.. ..+.++.+++.- |+|-++.. ++.+.+. |..+=.|.++++|+++.
T Consensus 154 vaPtt----------~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v 223 (265)
T COG0159 154 VAPTT----------PDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQV 223 (265)
T ss_pred eCCCC----------CHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHH
Confidence 44422 246677777763 44433322 2222222 23444578999999999
Q ss_pred hcccCC-CCCHHHHHHHHhh
Q 041263 270 FNLFDW-SIPPKLFSRFSNI 288 (318)
Q Consensus 270 l~~~~~-~L~~~~~~~l~~~ 288 (318)
.++++. -.-.+.++.|++-
T Consensus 224 ~~~ADGVIVGSAiV~~i~~~ 243 (265)
T COG0159 224 AEAADGVIVGSAIVKIIEEG 243 (265)
T ss_pred HHhCCeEEEcHHHHHHHHhc
Confidence 888664 4445555555543
No 45
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=67.47 E-value=3.4 Score=38.60 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=35.2
Q ss_pred cCCeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCC-CC-ChHHHHHHHhcCcE
Q 041263 153 SGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPV-WQ-QPALHEYCKSSGVH 206 (318)
Q Consensus 153 ~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~-~~-~~~l~~~~~~~gi~ 206 (318)
-|+||++||--++.+.+.++..... .-++.+.+..++ ++ ++.+++.|++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~-e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTEN-EKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCcc-HHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 4999999999999999988866443 223333333332 22 35677777777775
No 46
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=66.93 E-value=75 Score=29.68 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=72.4
Q ss_pred CCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHH
Q 041263 92 APEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKD 171 (318)
Q Consensus 92 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~ 171 (318)
+++.+.+.+++ ....|..++.+..-+.|+ .+.+...+.++.+++..- .+-+..+++.++..
T Consensus 80 ~~eeI~~~a~~-~~~~G~~~v~l~~G~~p~----------------~~~~~~~e~i~~Ik~~~p--~i~i~~~~~~ei~~ 140 (351)
T TIGR03700 80 SLEEIVARVKE-AYAPGATEVHIVGGLHPN----------------LPFEWYLDMIRTLKEAYP--DLHVKAFTAVEIHH 140 (351)
T ss_pred CHHHHHHHHHH-HHHCCCcEEEEecCCCCC----------------CCHHHHHHHHHHHHHHCC--CceEEeCCHHHHHH
Confidence 44555555553 245677777776554442 234556677777776642 34455566666554
Q ss_pred HHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCCHHH--HHHHHH
Q 041263 172 LCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQ--VALRWG 249 (318)
Q Consensus 172 ~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q--~al~~~ 249 (318)
+....+ ...++.+...++.|+..+... |. +.+..+.++.++.. ..+..+ -+++++
T Consensus 141 ~~~~~g-------------~~~~e~l~~LkeAGld~~~~~----g~-----E~~~~~v~~~i~~~-~~~~~~~l~~i~~a 197 (351)
T TIGR03700 141 FSKISG-------------LPTEEVLDELKEAGLDSMPGG----GA-----EIFAEEVRQQICPE-KISAERWLEIHRTA 197 (351)
T ss_pred HHHHcC-------------CCHHHHHHHHHHcCCCcCCCC----cc-----cccCHHHHhhcCCC-CCCHHHHHHHHHHH
Confidence 443322 123577888888887755422 21 33333444455433 234444 266666
Q ss_pred hhcC----CeEecCC-CCHHHHHHh
Q 041263 250 LQSG----HSILPKS-VNESRIKEN 269 (318)
Q Consensus 250 l~~~----~~vl~g~-~~~~~l~en 269 (318)
-..| ...++|. .+.++..+.
T Consensus 198 ~~~Gi~~~sg~i~GlgEt~edrv~~ 222 (351)
T TIGR03700 198 HELGLKTNATMLYGHIETPAHRVDH 222 (351)
T ss_pred HHcCCCcceEEEeeCCCCHHHHHHH
Confidence 6665 3556775 344444433
No 47
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=66.21 E-value=40 Score=30.86 Aligned_cols=115 Identities=15% Similarity=0.123 Sum_probs=72.8
Q ss_pred HHHHHH--HHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeEEe-eecC-----CCCChHHHHHHHhcCcEEEEecCCCCC
Q 041263 145 AAMEKL--YDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQV-ECHP-----VWQQPALHEYCKSSGVHLTAYSPLGSP 216 (318)
Q Consensus 145 ~~L~~l--~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~-~~~~-----~~~~~~l~~~~~~~gi~v~a~~pl~~g 216 (318)
+.++.| ....++..+-=.+.+.+.+.++.+...-++.-..+ .+|- ..|+..+.+++++.+.-++..++-.+.
T Consensus 145 ~e~~~l~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsN 224 (298)
T PRK01045 145 EDVAKLEVKDPDKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSN 224 (298)
T ss_pred HHHhhcccCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCcc
Confidence 344454 22355555555666777666665543211110111 0111 123467889999999998887766443
Q ss_pred CCCCcccccchHHHHHHHHHhCC------CHHHHHHHHHhhcC-CeEecCCCCHHHHHHh
Q 041263 217 GSWVKGEILKEAILQEIAGELNK------SPAQVALRWGLQSG-HSILPKSVNESRIKEN 269 (318)
Q Consensus 217 ~l~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~-~~vl~g~~~~~~l~en 269 (318)
-..|.++|++++. ++.++-..|..... +.+..|+|+|+.+-+.
T Consensus 225 ----------T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~e 274 (298)
T PRK01045 225 ----------SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQE 274 (298)
T ss_pred ----------HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHH
Confidence 2679999999873 78999999996554 6788999999977544
No 48
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=65.83 E-value=1.1e+02 Score=28.18 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=79.8
Q ss_pred cccCCcchHHHHHHHHHHcCCCEEeC----------CCCCCC-----HHHHHHHHHhhhhcCCcCCCceEEEeccCCCCC
Q 041263 27 TWKAPPGEVGEAVIAAVKAGYRHIDC----------AHVYDN-----EKEVGAALKQFFSTGVVKRDEMFITSKIWCCDL 91 (318)
Q Consensus 27 ~~~~~~~~~~~~l~~Al~~Gi~~~Dt----------A~~Ygs-----E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~ 91 (318)
.+..++++..+..+.+.+.|+..||. ...+|+ ...+.+.++... .--++-|+.|+... .
T Consensus 71 l~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~-----~a~d~pv~vKiR~G-~ 144 (321)
T PRK10415 71 IAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVV-----NAVDVPVTLKIRTG-W 144 (321)
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHH-----HhcCCceEEEEEcc-c
Confidence 34456677777777778899999993 223442 445555555431 01134577776321 1
Q ss_pred CCCh-HHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCC-ChHHH
Q 041263 92 APED-VPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNF-STKKL 169 (318)
Q Consensus 92 ~~~~-i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l 169 (318)
+.+. --..+-+-++..| +|.+.+|........ .-..-|+.+.++++.=.|-=||..+. +++++
T Consensus 145 ~~~~~~~~~~a~~le~~G---~d~i~vh~rt~~~~~------------~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da 209 (321)
T PRK10415 145 APEHRNCVEIAQLAEDCG---IQALTIHGRTRACLF------------NGEAEYDSIRAVKQKVSIPVIANGDITDPLKA 209 (321)
T ss_pred cCCcchHHHHHHHHHHhC---CCEEEEecCcccccc------------CCCcChHHHHHHHHhcCCcEEEeCCCCCHHHH
Confidence 1111 1123334466777 566778864322110 00123778888888777888888876 57888
Q ss_pred HHHHHhCCCCCeeEEeee
Q 041263 170 KDLCSYAKVKPAVNQVEC 187 (318)
Q Consensus 170 ~~~~~~~~~~~~~~q~~~ 187 (318)
.++++..+. +.+++-=
T Consensus 210 ~~~l~~~ga--dgVmiGR 225 (321)
T PRK10415 210 RAVLDYTGA--DALMIGR 225 (321)
T ss_pred HHHHhccCC--CEEEECh
Confidence 888876554 6666553
No 49
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=64.20 E-value=79 Score=28.03 Aligned_cols=100 Identities=13% Similarity=0.160 Sum_probs=61.1
Q ss_pred HHHHHHcCCeeEEEe--eCCChHHHHHHHHhCCCCCeeEEeeecCCCCC--hHHHHHHHhcCcEEEEecCCCCCCCCCcc
Q 041263 147 MEKLYDSGKARAIGV--SNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQ--PALHEYCKSSGVHLTAYSPLGSPGSWVKG 222 (318)
Q Consensus 147 L~~l~~~G~ir~iGv--s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~g~l~~~~ 222 (318)
|.+..++|+.- +|+ ...++.. .+.+...+.++.++=++-++++.+ ..++..++..|+.++.+-|-..
T Consensus 3 lk~~l~~g~~~-~g~~~~~~~p~~-~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~------- 73 (249)
T TIGR02311 3 FKQALKEGQPQ-IGLWLGLADPYA-AEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD------- 73 (249)
T ss_pred HHHHHHCCCce-EEEEEeCCCcHH-HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC-------
Confidence 44555668753 443 3333444 444455677778888887776544 3477778788888888866521
Q ss_pred cccchHHHHHHHHHhCCCHHHHHHHHHhhcC--CeEecCCCCHHHHHHhhcccCC
Q 041263 223 EILKEAILQEIAGELNKSPAQVALRWGLQSG--HSILPKSVNESRIKENFNLFDW 275 (318)
Q Consensus 223 ~~~~~~~l~~la~~~~~s~~q~al~~~l~~~--~~vl~g~~~~~~l~enl~~~~~ 275 (318)
+ .-++.+|..| ..++|-..+++++++.+++..+
T Consensus 74 ------------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 ------------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred ------------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 1345556655 3556667777777776666554
No 50
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=64.19 E-value=1.2e+02 Score=27.87 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=82.5
Q ss_pred cccccccCCcchHHHHHHHHHHcCCCEEeCC---------CCC-CC-----HHHHHHHHHhhhhcCCcCCCceEEEeccC
Q 041263 23 VGLGTWKAPPGEVGEAVIAAVKAGYRHIDCA---------HVY-DN-----EKEVGAALKQFFSTGVVKRDEMFITSKIW 87 (318)
Q Consensus 23 lglG~~~~~~~~~~~~l~~Al~~Gi~~~DtA---------~~Y-gs-----E~~lG~al~~~~~~~~~~R~~~~i~tK~~ 87 (318)
++...+..++++..+..+.+.++|+..||.- ..| |+ .+.+.+.++.. ..+-++-|+.|+.
T Consensus 65 ~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~v-----r~~~~~pv~vKir 139 (319)
T TIGR00737 65 ISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAV-----VDAVDIPVTVKIR 139 (319)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHH-----HhhcCCCEEEEEE
Confidence 4444455677888888888889999999852 123 32 35555555553 0112356778863
Q ss_pred CC-CCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCC-
Q 041263 88 CC-DLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFS- 165 (318)
Q Consensus 88 ~~-~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~- 165 (318)
.. +.....+ ..+-+.|+..|+ |.+.+|...... . ..-...|+.+.++++.=.+--||.....
T Consensus 140 ~g~~~~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~-~-----------~~~~~~~~~i~~i~~~~~ipvi~nGgI~~ 203 (319)
T TIGR00737 140 IGWDDAHINA-VEAARIAEDAGA---QAVTLHGRTRAQ-G-----------YSGEANWDIIARVKQAVRIPVIGNGDIFS 203 (319)
T ss_pred cccCCCcchH-HHHHHHHHHhCC---CEEEEEcccccc-c-----------CCCchhHHHHHHHHHcCCCcEEEeCCCCC
Confidence 21 1111112 244455677775 555667532211 0 1112347788888887667778877654
Q ss_pred hHHHHHHHHhCCCCCeeEEeeec
Q 041263 166 TKKLKDLCSYAKVKPAVNQVECH 188 (318)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~q~~~~ 188 (318)
++++.++++.++. +.+++--.
T Consensus 204 ~~da~~~l~~~ga--d~VmigR~ 224 (319)
T TIGR00737 204 PEDAKAMLETTGC--DGVMIGRG 224 (319)
T ss_pred HHHHHHHHHhhCC--CEEEEChh
Confidence 7788888866554 66666533
No 51
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=63.42 E-value=1e+02 Score=30.27 Aligned_cols=124 Identities=10% Similarity=0.111 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEeeCC----ChHHHHHHHHhC---C-CCCe-eEEeeecCCCCChHHHHHHHhcCcEEE
Q 041263 138 LCLPETWAAMEKLYDSGKARAIGVSNF----STKKLKDLCSYA---K-VKPA-VNQVECHPVWQQPALHEYCKSSGVHLT 208 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iGvs~~----~~~~l~~~~~~~---~-~~~~-~~q~~~~~~~~~~~l~~~~~~~gi~v~ 208 (318)
.+.+.+++.++.++++..++.+-+.+- +...+.++++.. + .++. ..+...+.+..+.++++.+++.|+.-+
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v 301 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVHI 301 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcEE
Confidence 668899999999998766888877642 344444443321 1 2221 234444445556789999999998766
Q ss_pred EecCCCCCCCCCcccccchHHHHHHHHHhCCCHHHHHHHHHhhcCC----eEecCC--CCHHHHHHhhc
Q 041263 209 AYSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQVALRWGLQSGH----SILPKS--VNESRIKENFN 271 (318)
Q Consensus 209 a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~----~vl~g~--~~~~~l~enl~ 271 (318)
..+.=. ...+.++.+.+.+......-+++.+.+.|. ..++|. .+.+++++.++
T Consensus 302 ~iGiES----------~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~ 360 (497)
T TIGR02026 302 SLGTEA----------AAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYR 360 (497)
T ss_pred EEcccc----------CCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHH
Confidence 653321 122334444333322223345555555552 345553 55666666554
No 52
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=63.36 E-value=13 Score=30.91 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHcC-CeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEec
Q 041263 138 LCLPETWAAMEKLYDSG-KARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYS 211 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~ 211 (318)
.+..+++++|.++++.| +|..+|..+... .+..+.+..+. .+.++.|+-...-...+..+++.|+.++.-+
T Consensus 61 ~s~~Dil~al~~a~~~~~~Iavv~~~~~~~-~~~~~~~ll~~--~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg 132 (176)
T PF06506_consen 61 ISGFDILRALAKAKKYGPKIAVVGYPNIIP-GLESIEELLGV--DIKIYPYDSEEEIEAAIKQAKAEGVDVIVGG 132 (176)
T ss_dssp --HHHHHHHHHHCCCCTSEEEEEEESS-SC-CHHHHHHHHT---EEEEEEESSHHHHHHHHHHHHHTT--EEEES
T ss_pred CCHhHHHHHHHHHHhcCCcEEEEecccccH-HHHHHHHHhCC--ceEEEEECCHHHHHHHHHHHHHcCCcEEECC
Confidence 55678899999998776 566666666552 23333333333 5555555332212467888999999988864
No 53
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=62.94 E-value=1.1e+02 Score=27.06 Aligned_cols=90 Identities=10% Similarity=0.090 Sum_probs=48.5
Q ss_pred HHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCC-ChHHHHHHHHhCCC
Q 041263 100 LSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNF-STKKLKDLCSYAKV 178 (318)
Q Consensus 100 ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~ 178 (318)
+-+-|+.+| +|.+.+|..+..... ..--++.+.++++.-.+.-|..... +++.+.++++..++
T Consensus 160 ~~~~l~~~G---~~~iivt~i~~~g~~-------------~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~ 223 (254)
T TIGR00735 160 WAKEVEKLG---AGEILLTSMDKDGTK-------------SGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKA 223 (254)
T ss_pred HHHHHHHcC---CCEEEEeCcCcccCC-------------CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCc
Confidence 334445666 667777765442110 0112455666666655666666544 47788888776544
Q ss_pred CCeeEEeeecCCCC---ChHHHHHHHhcCcEE
Q 041263 179 KPAVNQVECHPVWQ---QPALHEYCKSSGVHL 207 (318)
Q Consensus 179 ~~~~~q~~~~~~~~---~~~l~~~~~~~gi~v 207 (318)
+.+.+--.+... -.++.+.|+++|+.+
T Consensus 224 --dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 224 --DAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred --ceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 332222111111 257788888888754
No 54
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=62.03 E-value=1e+02 Score=27.40 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEec
Q 041263 143 TWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYS 211 (318)
Q Consensus 143 ~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~ 211 (318)
+...++.+++.-.+ -+.+-+++++.++++++.+ . ..++-+. ... .+++++.++++|..++.+.
T Consensus 63 l~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~G-~-~iINsis--~~~-~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 63 VVPVIKALRDQPDV-PISVDTYRAEVARAALEAG-A-DIINDVS--GGQ-DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred HHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHcC-C-CEEEECC--CCC-CchhHHHHHHcCCcEEEEe
Confidence 44555666655223 3889999999999999873 2 2333332 222 5679999999999999964
No 55
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=59.78 E-value=1.7e+02 Score=28.13 Aligned_cols=115 Identities=14% Similarity=0.118 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhC-CCccceEeecCCCCCCCCCCCCCCC
Q 041263 55 VYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQ-LDYIDLYLIHWPFRTKPETRGFEPD 133 (318)
Q Consensus 55 ~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~ 133 (318)
.||.+..|-+++++..... +.+-++|.|-.. ...--++++.-+++.-++.. -..+.++.+|.|.......
T Consensus 62 V~Gg~~~L~~~i~~~~~~~--~p~~I~v~~tC~-~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~------ 132 (428)
T cd01965 62 VFGGEDNLIEALKNLLSRY--KPDVIGVLTTCL-TETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHE------ 132 (428)
T ss_pred eECcHHHHHHHHHHHHHhc--CCCEEEEECCcc-hhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHH------
Confidence 4677888888888874332 333456666543 22223444444444333221 0236688888887653110
Q ss_pred CCCCCCHHHHHHHHHHH-------HHcCCeeEEEeeCC---ChHHHHHHHHhCCCCCee
Q 041263 134 IMLPLCLPETWAAMEKL-------YDSGKARAIGVSNF---STKKLKDLCSYAKVKPAV 182 (318)
Q Consensus 134 ~~~~~~~~~~~~~L~~l-------~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~~ 182 (318)
.....++++|-+. ++.++|--||-++. +.+.+.++++..++++..
T Consensus 133 ----~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 133 ----TGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred ----HHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 1123334444332 23466888876654 357788888887764443
No 56
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=59.34 E-value=65 Score=31.49 Aligned_cols=128 Identities=20% Similarity=0.297 Sum_probs=74.1
Q ss_pred HHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCC
Q 041263 60 KEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLC 139 (318)
Q Consensus 60 ~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~ 139 (318)
+-+|.+|+. +.+++|+--+...|+....+..-+.+.+++-++.. --+-|.--++. + .+
T Consensus 342 ~dlG~~L~~--------~~~l~VsINl~a~Dl~s~rli~~~~~~l~~~~v~p-qQI~lElTER~-----------f--~D 399 (524)
T COG4943 342 RDLGDLLRQ--------HRDLHVSINLSASDLASPRLIDRLNRKLAQYQVRP-QQIALELTERT-----------F--AD 399 (524)
T ss_pred HHhHHHHHh--------CcceEEEEeeeehhhcCchHHHHHHHHHHhcCcCh-HHheeehhhhh-----------h--cC
Confidence 446666664 67889988887777767788888888888877642 22222111111 0 44
Q ss_pred HHHHHHHHHHHHHcCCeeEEEeeCCC--hHHHHHHHHh----CCCCCeeEE-eeecCCCCC--hHHHHHHHhcCcEEEEe
Q 041263 140 LPETWAAMEKLYDSGKARAIGVSNFS--TKKLKDLCSY----AKVKPAVNQ-VECHPVWQQ--PALHEYCKSSGVHLTAY 210 (318)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvs~~~--~~~l~~~~~~----~~~~~~~~q-~~~~~~~~~--~~l~~~~~~~gi~v~a~ 210 (318)
.......+.++++.|. .|=+-+|. ...+..+.+. .+++-++++ +..+....- +.+++.|+++|+.+++=
T Consensus 400 ~~~~~~iI~r~ReaG~--~IyIDDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaE 477 (524)
T COG4943 400 PKKMTPIILRLREAGH--EIYIDDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAE 477 (524)
T ss_pred chhhhHHHHHHHhcCC--eEEEccCcCcchhHHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEee
Confidence 5667788999999998 44444444 2233222221 111112222 111111111 57899999999999986
Q ss_pred c
Q 041263 211 S 211 (318)
Q Consensus 211 ~ 211 (318)
+
T Consensus 478 G 478 (524)
T COG4943 478 G 478 (524)
T ss_pred c
Confidence 4
No 57
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=59.11 E-value=63 Score=28.39 Aligned_cols=100 Identities=10% Similarity=0.099 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeeEEEeeCCChHHHHHHH
Q 041263 95 DVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSG-KARAIGVSNFSTKKLKDLC 173 (318)
Q Consensus 95 ~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~ 173 (318)
.-+..+-..|.++|+++|.+-..-.+... + .....++.++.+++.+ .++...++......++.+.
T Consensus 19 e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p-------------~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~ 84 (265)
T cd03174 19 EDKLEIAEALDEAGVDSIEVGSGASPKAV-P-------------QMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERAL 84 (265)
T ss_pred HHHHHHHHHHHHcCCCEEEeccCcCcccc-c-------------cCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHH
Confidence 44455556688999998888765443221 1 1135678888888888 5776677765566666665
Q ss_pred HhCCCCCeeEEeeecCCC--------CC--------hHHHHHHHhcCcEEEEec
Q 041263 174 SYAKVKPAVNQVECHPVW--------QQ--------PALHEYCKSSGVHLTAYS 211 (318)
Q Consensus 174 ~~~~~~~~~~q~~~~~~~--------~~--------~~l~~~~~~~gi~v~a~~ 211 (318)
+. + .+.+++.+...+ +. ...+++++++|+.+...-
T Consensus 85 ~~-g--~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 85 EA-G--VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred hC-C--cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 54 3 355555554431 11 356778999998876654
No 58
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=59.02 E-value=1.2e+02 Score=26.09 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=74.7
Q ss_pred CCcchHHHHHHHHHHcCCCEEeCC----------CCCC-----CHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCC
Q 041263 30 APPGEVGEAVIAAVKAGYRHIDCA----------HVYD-----NEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPE 94 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~DtA----------~~Yg-----sE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~ 94 (318)
.++++..+..+.+.++|+..||.- +.|| ..+.+-+.++.. .+. + .+-|+.|+.... +.+
T Consensus 64 ~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v-~~~-~---~~~v~vk~r~~~-~~~ 137 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAV-REA-V---PIPVTVKIRLGW-DDE 137 (231)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHH-HHh-c---CCCEEEEEeecc-CCc
Confidence 356777888888889999999852 4576 344455555543 101 1 145666653211 122
Q ss_pred -hHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCC-ChHHHHHH
Q 041263 95 -DVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNF-STKKLKDL 172 (318)
Q Consensus 95 -~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~ 172 (318)
... .+-+.|+..| +|.+.+|........ . ....|+.+.++++.-.+--++..+. +++++.++
T Consensus 138 ~~~~-~~~~~l~~~G---vd~i~v~~~~~~~~~-----------~-~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~ 201 (231)
T cd02801 138 EETL-ELAKALEDAG---ASALTVHGRTREQRY-----------S-GPADWDYIAEIKEAVSIPVIANGDIFSLEDALRC 201 (231)
T ss_pred hHHH-HHHHHHHHhC---CCEEEECCCCHHHcC-----------C-CCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHH
Confidence 222 2333455666 456667764321100 0 0123667777888777777777766 57888888
Q ss_pred HHhCCCCCeeEEee
Q 041263 173 CSYAKVKPAVNQVE 186 (318)
Q Consensus 173 ~~~~~~~~~~~q~~ 186 (318)
++..+. +.+++-
T Consensus 202 l~~~ga--d~V~ig 213 (231)
T cd02801 202 LEQTGV--DGVMIG 213 (231)
T ss_pred HHhcCC--CEEEEc
Confidence 776443 555544
No 59
>PRK07094 biotin synthase; Provisional
Probab=58.09 E-value=1.4e+02 Score=27.32 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEeeC-----CChHHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecC
Q 041263 138 LCLPETWAAMEKLYDSGKARAIGVSN-----FSTKKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iGvs~-----~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~p 212 (318)
.+.+++.+.++.+++.| ++.+.++. +..+.+.++++.....+. +.+.+++.....+.++..++.|+..+..+.
T Consensus 70 ls~eei~~~~~~~~~~g-~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~-l~i~~~~g~~~~e~l~~Lk~aG~~~v~~gl 147 (323)
T PRK07094 70 LSPEEILECAKKAYELG-YRTIVLQSGEDPYYTDEKIADIIKEIKKELD-VAITLSLGERSYEEYKAWKEAGADRYLLRH 147 (323)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEecCCCCCCCHHHHHHHHHHHHccCC-ceEEEecCCCCHHHHHHHHHcCCCEEEecc
Confidence 46788888888888876 56666652 234556666554332111 233445555567888999999988766432
Q ss_pred CCCCCCCCcccccchHHHHHHHHHhCCCHHH--HHHHHHhhcC----CeEecCC--CCHHHHHHhhc
Q 041263 213 LGSPGSWVKGEILKEAILQEIAGELNKSPAQ--VALRWGLQSG----HSILPKS--VNESRIKENFN 271 (318)
Q Consensus 213 l~~g~l~~~~~~~~~~~l~~la~~~~~s~~q--~al~~~l~~~----~~vl~g~--~~~~~l~enl~ 271 (318)
= -...+.++.+.. +.+..+ -+++++...| ..+++|. .+.+++.+.+.
T Consensus 148 E----------s~~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 148 E----------TADKELYAKLHP--GMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred c----------cCCHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 2 112233444433 334444 2566666655 3556773 67777776654
No 60
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.25 E-value=1.9e+02 Score=28.04 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=33.6
Q ss_pred cchHHHHHHHHHhCCCHHHHHHHHHhhc-C-----CeEecCCCCHHHHHHhhc
Q 041263 225 LKEAILQEIAGELNKSPAQVALRWGLQS-G-----HSILPKSVNESRIKENFN 271 (318)
Q Consensus 225 ~~~~~l~~la~~~~~s~~q~al~~~l~~-~-----~~vl~g~~~~~~l~enl~ 271 (318)
+..+.+++||.+.|..|.++.+. +|.+ + .+.++---+++++...++
T Consensus 382 ~agKsl~aIAd~~grdp~da~lD-~Lardg~~~~~~~~i~an~s~e~l~rila 433 (579)
T COG3653 382 LAGKSLKAIADERGRDPLDAFLD-VLARDGERAGRWTTIVANMSPEDLNRILA 433 (579)
T ss_pred hhhhhHHHHHHHhCCCHHHHHHH-HHHhcccccceeEEEEecCCcchHHHHhc
Confidence 34578999999999999999888 5554 2 345666666666666554
No 61
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=56.44 E-value=18 Score=32.74 Aligned_cols=115 Identities=21% Similarity=0.187 Sum_probs=68.2
Q ss_pred HHHHHHHc--CCeeEEEeeCCChHHHHHHHHhCCC-CCeeEEeeecCC-----CCChHHHHHHHhcCcEEEEecCCCCCC
Q 041263 146 AMEKLYDS--GKARAIGVSNFSTKKLKDLCSYAKV-KPAVNQVECHPV-----WQQPALHEYCKSSGVHLTAYSPLGSPG 217 (318)
Q Consensus 146 ~L~~l~~~--G~ir~iGvs~~~~~~l~~~~~~~~~-~~~~~q~~~~~~-----~~~~~l~~~~~~~gi~v~a~~pl~~g~ 217 (318)
.++.+... +++-.+.=.+++.+...++.+...- .+......+|-. .|+..+.+++++-++-++.-++-.+
T Consensus 145 ~~~~l~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~Ss-- 222 (281)
T PF02401_consen 145 DVEKLPISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSS-- 222 (281)
T ss_dssp HHHHGGGSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-H--
T ss_pred hhcccCCCCCCeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCc--
Confidence 34444433 4777777778887776666554321 111111112222 2346788889988988887665532
Q ss_pred CCCcccccchHHHHHHHHHhCC------CHHHHHHHHHhhcC-CeEecCCCCHHHHHHhh
Q 041263 218 SWVKGEILKEAILQEIAGELNK------SPAQVALRWGLQSG-HSILPKSVNESRIKENF 270 (318)
Q Consensus 218 l~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~-~~vl~g~~~~~~l~enl 270 (318)
....|.++|++++. ++.++...|.-... +.+..|+|+|+.+-+.+
T Consensus 223 --------NT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 223 --------NTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp --------HHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred --------cHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 23679999999984 78999999988776 78889999999876553
No 62
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=54.64 E-value=1.6e+02 Score=26.25 Aligned_cols=103 Identities=10% Similarity=-0.029 Sum_probs=61.1
Q ss_pred CCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeeEEEeeCCChHHHH
Q 041263 92 APEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDS-GKARAIGVSNFSTKKLK 170 (318)
Q Consensus 92 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvs~~~~~~l~ 170 (318)
+++.+.+..++.++ -|.|+||+=. .|.. .+..+.+..+....++ -.+ -|.+-+++++.++
T Consensus 24 ~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~---------------~~~~ee~~r~v~~i~~~~~~-piSIDT~~~~v~e 84 (252)
T cd00740 24 DYDEALDVARQQVE-GGAQILDLNV--DYGG---------------LDGVSAMKWLLNLLATEPTV-PLMLDSTNWEVIE 84 (252)
T ss_pred CHHHHHHHHHHHHH-CCCCEEEECC--CCCC---------------CCHHHHHHHHHHHHHHhcCC-cEEeeCCcHHHHH
Confidence 45566666666654 5999999864 2221 2223333333222332 122 3888899999999
Q ss_pred HHHHhCCCCCeeEEeeecCCC-CChHHHHHHHhcCcEEEEecCC
Q 041263 171 DLCSYAKVKPAVNQVECHPVW-QQPALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 171 ~~~~~~~~~~~~~q~~~~~~~-~~~~l~~~~~~~gi~v~a~~pl 213 (318)
++++.+.-...++-+.....+ ....+++.++++|..++.+.--
T Consensus 85 ~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 85 AGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred HHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 999874223344443322111 2357889999999998887543
No 63
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=54.60 E-value=1.2e+02 Score=28.65 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=82.3
Q ss_pred CHHHHHHHHHhhhhcC--CcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccc-eEeecCCCCCCCCCCCCCCCC
Q 041263 58 NEKEVGAALKQFFSTG--VVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYID-LYLIHWPFRTKPETRGFEPDI 134 (318)
Q Consensus 58 sE~~lG~al~~~~~~~--~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iD-l~~lH~p~~~~~~~~~~~~~~ 134 (318)
|...+=++++-..... .+....+.|||=.. ...|++-.++. ++ +- -+-||.|+.......-..+..
T Consensus 183 NydnV~~ai~il~d~~g~~is~R~ITVST~Gi-----vp~I~~la~~~---~~---v~LAiSLHA~~~e~R~~lmPin~~ 251 (371)
T PRK14461 183 NYDRWWQAVERLHDPQGFNLGARSMTVSTVGL-----VKGIRRLANER---LP---INLAISLHAPDDALRSELMPVNRR 251 (371)
T ss_pred hHHHHHHHHHHhcCccccCcCCCceEEEeecc-----hhHHHHHHhcc---cC---ceEEEEeCCCCHHHHHHhcCcccC
Confidence 4455666776652110 12344566666531 22333333321 11 22 256899876553322222222
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEe-----e--CCChHHHHHHHHhCC-C------CCeeEEeeecCCCCC-------
Q 041263 135 MLPLCLPETWAAMEKLYDSGKARAIGV-----S--NFSTKKLKDLCSYAK-V------KPAVNQVECHPVWQQ------- 193 (318)
Q Consensus 135 ~~~~~~~~~~~~L~~l~~~G~ir~iGv-----s--~~~~~~l~~~~~~~~-~------~~~~~q~~~~~~~~~------- 193 (318)
.+++++++++.+..+... |.|-+ . |-++++..++.+... . +..++-++||+....
T Consensus 252 ---ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ps~ 327 (371)
T PRK14461 252 ---YPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRSER 327 (371)
T ss_pred ---CCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCCCH
Confidence 578999999999875543 23433 2 556777777766654 3 568899999986431
Q ss_pred ---hHHHHHHHhcCcEEEEecCCCC
Q 041263 194 ---PALHEYCKSSGVHLTAYSPLGS 215 (318)
Q Consensus 194 ---~~l~~~~~~~gi~v~a~~pl~~ 215 (318)
....+.++++||.+......|.
T Consensus 328 ~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 328 ERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred HHHHHHHHHHHHCCceEEEeCCCCc
Confidence 2345568889999999987754
No 64
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=53.72 E-value=1.7e+02 Score=26.34 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=8.4
Q ss_pred CeEecCCCCHHHHHHhhc
Q 041263 254 HSILPKSVNESRIKENFN 271 (318)
Q Consensus 254 ~~vl~g~~~~~~l~enl~ 271 (318)
..|++|+.-++.++++..
T Consensus 228 DGVIVGSAiV~~i~~~~~ 245 (265)
T COG0159 228 DGVIVGSAIVKIIEEGLD 245 (265)
T ss_pred CeEEEcHHHHHHHHhccc
Confidence 344445444444444443
No 65
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=53.16 E-value=1.6e+02 Score=26.04 Aligned_cols=107 Identities=14% Similarity=0.104 Sum_probs=63.6
Q ss_pred CCChHHHHHHHHHHHhCCCccceEee-cCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHH
Q 041263 92 APEDVPKALSRSLEHLQLDYIDLYLI-HWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLK 170 (318)
Q Consensus 92 ~~~~i~~~ve~SL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~ 170 (318)
+.+.+.+..++.+ .-|.|.||+=.- -+|... +- +.+ .........++.+++.-.+ -|.+-+++++.++
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~-~~----~~~----~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~ 90 (258)
T cd00423 22 SLDKALEHARRMV-EEGADIIDIGGESTRPGAE-PV----SVE----EELERVIPVLRALAGEPDV-PISVDTFNAEVAE 90 (258)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCC-cC----CHH----HHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHH
Confidence 3344444444433 568899998632 223211 00 000 1223455666777665343 3899999999999
Q ss_pred HHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCC
Q 041263 171 DLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 171 ~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 213 (318)
++++.+ .+.+|-+ +....+.++++.++++|..++.+..-
T Consensus 91 aaL~~g--~~iINdi--s~~~~~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 91 AALKAG--ADIINDV--SGGRGDPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred HHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECcC
Confidence 999876 2333332 22322368999999999999888543
No 66
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=52.96 E-value=20 Score=24.42 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhh
Q 041263 229 ILQEIAGELNKSPAQVALRWGLQ 251 (318)
Q Consensus 229 ~l~~la~~~~~s~~q~al~~~l~ 251 (318)
.+.+||+++|+++.++|..|+--
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 37899999999999999999753
No 67
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=52.63 E-value=50 Score=33.72 Aligned_cols=114 Identities=15% Similarity=0.077 Sum_probs=72.9
Q ss_pred HHHHHHHcCCeeEEEeeCCChHHHHHHHHhCCC---CCe-eEEeeecCCCCChHHHHHHHhcCcEEEEecCCCCCCCCCc
Q 041263 146 AMEKLYDSGKARAIGVSNFSTKKLKDLCSYAKV---KPA-VNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPGSWVK 221 (318)
Q Consensus 146 ~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~---~~~-~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~l~~~ 221 (318)
.++.+....++..+-=.+.+.+.+..+.+...- ... .+.+-+-..+++..+.++|++.++-++.-++-.+.
T Consensus 146 ~~~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~SsN----- 220 (647)
T PRK00087 146 EAEKLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSSN----- 220 (647)
T ss_pred HHhhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCcc-----
Confidence 344443345555555566666666555544321 111 11222222234567899999999998887766443
Q ss_pred ccccchHHHHHHHHHhCC------CHHHHHHHHHhhcC-CeEecCCCCHHHHHHh
Q 041263 222 GEILKEAILQEIAGELNK------SPAQVALRWGLQSG-HSILPKSVNESRIKEN 269 (318)
Q Consensus 222 ~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~-~~vl~g~~~~~~l~en 269 (318)
...|.++|++.|. ++.++.-.|.-... +.+..|+|+|+.+-+.
T Consensus 221 -----t~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~ 270 (647)
T PRK00087 221 -----TTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEE 270 (647)
T ss_pred -----HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHH
Confidence 3679999999873 78899989987655 6788999999966443
No 68
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=52.39 E-value=1e+02 Score=28.02 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHH
Q 041263 95 DVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCS 174 (318)
Q Consensus 95 ~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 174 (318)
.-+..+-+.|.++|+++|.+-.++.|... +. ..+.++.+..+.+...++...+. .....++.+++
T Consensus 26 e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~-p~-------------~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~ 90 (287)
T PRK05692 26 ADKIALIDRLSAAGLSYIEVASFVSPKWV-PQ-------------MADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALA 90 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCcccc-cc-------------cccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHH
Confidence 45567777899999999998755544321 11 12235556666544445655554 46777777776
Q ss_pred hCCCCCeeEEeeecCC------CCC--------hHHHHHHHhcCcEEEE
Q 041263 175 YAKVKPAVNQVECHPV------WQQ--------PALHEYCKSSGVHLTA 209 (318)
Q Consensus 175 ~~~~~~~~~q~~~~~~------~~~--------~~l~~~~~~~gi~v~a 209 (318)
. +.+..-+-+..|.. ... .+.+++++++|+.+.+
T Consensus 91 ~-g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 91 A-GADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred c-CCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4 33222222223221 111 3578899999998863
No 69
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=51.77 E-value=1e+02 Score=31.58 Aligned_cols=146 Identities=20% Similarity=0.223 Sum_probs=79.8
Q ss_pred chHHHHHHHHHHcCCCEEeCCCCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCcc
Q 041263 33 GEVGEAVIAAVKAGYRHIDCAHVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYI 112 (318)
Q Consensus 33 ~~~~~~l~~Al~~Gi~~~DtA~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~i 112 (318)
+.+.++++.|-|.|++.+- .|. |+--+..=+. +-|+-|+..|..+ |-..--.+.+..+--.-.-+
T Consensus 43 EIaIRvFRa~tEL~~~tvA---iYs-eqD~~sMHRq-------KADEaY~iGk~l~----PV~AYL~ideii~iak~~~v 107 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTVA---IYS-EQDRLSMHRQ-------KADEAYLIGKGLP----PVGAYLAIDEIISIAKKHNV 107 (1176)
T ss_pred cchhHHHHHHhhhcceEEE---EEe-ccchhhhhhh-------ccccceecccCCC----chhhhhhHHHHHHHHHHcCC
Confidence 5578899999999999884 463 2222222222 5788899999743 33333334443333332335
Q ss_pred ceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHH---------HHhCCCCCeeE
Q 041263 113 DLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDL---------CSYAKVKPAVN 183 (318)
Q Consensus 113 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~---------~~~~~~~~~~~ 183 (318)
|.+ | |+.... .|- ..+.+.+++--|++||=| ++.+..+ .-.++++ ++
T Consensus 108 dav--H------PGYGFL----------SEr-sdFA~av~~AGi~fiGPs---peVi~~mGDKv~AR~~Ai~agVp--vV 163 (1176)
T KOG0369|consen 108 DAV--H------PGYGFL----------SER-SDFAQAVQDAGIRFIGPS---PEVIDSMGDKVAARAIAIEAGVP--VV 163 (1176)
T ss_pred Cee--c------CCcccc----------ccc-hHHHHHHHhcCceEeCCC---HHHHHHhhhHHHHHHHHHHcCCC--cc
Confidence 544 3 111100 011 234444555557899965 3333322 1122331 11
Q ss_pred EeeecCCCCChHHHHHHHhcCcEEEEecCCCCCC
Q 041263 184 QVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPG 217 (318)
Q Consensus 184 q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~ 217 (318)
-.--.|...-.+..++|+++|..||--..+|+|+
T Consensus 164 PGTpgPitt~~EA~eF~k~yG~PvI~KAAyGGGG 197 (1176)
T KOG0369|consen 164 PGTPGPITTVEEALEFVKEYGLPVIIKAAYGGGG 197 (1176)
T ss_pred CCCCCCcccHHHHHHHHHhcCCcEEEeecccCCC
Confidence 1112223333689999999999999999998876
No 70
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=51.62 E-value=72 Score=27.44 Aligned_cols=78 Identities=10% Similarity=0.055 Sum_probs=46.9
Q ss_pred HHHHhCCCccceEeecC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEee-CCChHHHHHHHHhCCCCC
Q 041263 103 SLEHLQLDYIDLYLIHW-PFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVS-NFSTKKLKDLCSYAKVKP 180 (318)
Q Consensus 103 SL~~Lg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~ 180 (318)
.+..+|.|++=+++... |.. .+.+.+ ..+.+.. .+.++.+||. |-+++.+.++++.. .+
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~---------------V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~--~~ 76 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRH---------------QTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNT--SI 76 (207)
T ss_pred HHHHcCCCEEEEecCCCCccc---------------CCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhC--CC
Confidence 44579999999974432 211 333333 3333322 3567889996 77788898888764 45
Q ss_pred eeEEeeecCCCCChHHHHHHHh
Q 041263 181 AVNQVECHPVWQQPALHEYCKS 202 (318)
Q Consensus 181 ~~~q~~~~~~~~~~~l~~~~~~ 202 (318)
+++|+.- +...+.++..++
T Consensus 77 d~vQLHG---~e~~~~~~~l~~ 95 (207)
T PRK13958 77 NTIQLHG---TESIDFIQEIKK 95 (207)
T ss_pred CEEEECC---CCCHHHHHHHhh
Confidence 8889873 223444544443
No 71
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=51.53 E-value=1.1e+02 Score=24.51 Aligned_cols=91 Identities=16% Similarity=0.064 Sum_probs=47.7
Q ss_pred cCCeeEEEeeCCChHH----HHHHHHhCCCCCeeEEeeecCCCCC----------hHHHHHHHhcCcEEEEecCCCCCCC
Q 041263 153 SGKARAIGVSNFSTKK----LKDLCSYAKVKPAVNQVECHPVWQQ----------PALHEYCKSSGVHLTAYSPLGSPGS 218 (318)
Q Consensus 153 ~G~ir~iGvs~~~~~~----l~~~~~~~~~~~~~~q~~~~~~~~~----------~~l~~~~~~~gi~v~a~~pl~~g~l 218 (318)
.-.+...|++..+... +...+.....+.+++++--|-..+. ..+++.+++++..++..++......
T Consensus 36 ~~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~~~~~~~ 115 (177)
T cd01822 36 DVTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGMQAPPNY 115 (177)
T ss_pred CeEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcc
Confidence 3457788888777544 3333333334444555554533221 4578888888888877654211111
Q ss_pred CCcccccchHHHHHHHHHhCCCHHH
Q 041263 219 WVKGEILKEAILQEIAGELNKSPAQ 243 (318)
Q Consensus 219 ~~~~~~~~~~~l~~la~~~~~s~~q 243 (318)
.......-++.++++|+++++....
T Consensus 116 ~~~~~~~~~~~~~~~a~~~~~~~~d 140 (177)
T cd01822 116 GPRYTRRFAAIYPELAEEYGVPLVP 140 (177)
T ss_pred chHHHHHHHHHHHHHHHHcCCcEec
Confidence 0000111235677777777654433
No 72
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=51.15 E-value=1.9e+02 Score=26.09 Aligned_cols=143 Identities=18% Similarity=0.190 Sum_probs=80.9
Q ss_pred CCcchHHHHHHHHHHcCCCEEeC----------CCCCC-CHHHHHHHHHhhhhcCCcCCC-ceEEEeccCCCCCCCChHH
Q 041263 30 APPGEVGEAVIAAVKAGYRHIDC----------AHVYD-NEKEVGAALKQFFSTGVVKRD-EMFITSKIWCCDLAPEDVP 97 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~Dt----------A~~Yg-sE~~lG~al~~~~~~~~~~R~-~~~i~tK~~~~~~~~~~i~ 97 (318)
.+.++..+..+.+.+.|+..||. ...|+ +.+.+-+.++.. .+. ++-|..|+... . +.+
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~v------r~~~~~Pv~vKl~~~-~--~~~- 168 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAV------KKATDVPVIVKLTPN-V--TDI- 168 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHH------HhccCCCEEEEeCCC-c--hhH-
Confidence 35577788888888999999986 12344 566666666654 122 67788898532 1 222
Q ss_pred HHHHHHHHHhCCCccceEe------ecCCCCC--CC-CCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCC-ChH
Q 041263 98 KALSRSLEHLQLDYIDLYL------IHWPFRT--KP-ETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNF-STK 167 (318)
Q Consensus 98 ~~ve~SL~~Lg~d~iDl~~------lH~p~~~--~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~ 167 (318)
..+-+.++..|.|.|++.- +|.-... .. .....+.. ....-.++.+.++++.=.+--||+... +++
T Consensus 169 ~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~----~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~ 244 (296)
T cd04740 169 VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGP----AIKPIALRMVYQVYKAVEIPIIGVGGIASGE 244 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCc----ccchHHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 2333457778877766531 1110000 00 00000000 111235677777777667888898886 578
Q ss_pred HHHHHHHhCCCCCeeEEeeecC
Q 041263 168 KLKDLCSYAKVKPAVNQVECHP 189 (318)
Q Consensus 168 ~l~~~~~~~~~~~~~~q~~~~~ 189 (318)
.+.+++.. +. +.+|+--.+
T Consensus 245 da~~~l~~-GA--d~V~igra~ 263 (296)
T cd04740 245 DALEFLMA-GA--SAVQVGTAN 263 (296)
T ss_pred HHHHHHHc-CC--CEEEEchhh
Confidence 88888874 43 666655333
No 73
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=51.08 E-value=77 Score=30.50 Aligned_cols=70 Identities=26% Similarity=0.322 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHHhCCCccceEee-cCCCCCCCCCCCCCCCCCCCCCH--HHHHHHH-HHHHHcCCeeEEEeeCCCh
Q 041263 93 PEDVPKALSRSLEHLQLDYIDLYLI-HWPFRTKPETRGFEPDIMLPLCL--PETWAAM-EKLYDSGKARAIGVSNFST 166 (318)
Q Consensus 93 ~~~i~~~ve~SL~~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~--~~~~~~L-~~l~~~G~ir~iGvs~~~~ 166 (318)
.+.+++.++..+ .|+.|+|.+|.+ |-|.... ........ .+|... .+.++.. +.|.+.|. +.+|+|||..
T Consensus 203 ~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~-~~~~~~~~-~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 203 LESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKF-AQRKIKGK-ALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred HHHHHHHHHHHH-hCCCCEEEEeeeecCCCchh-hhhcccCC-CCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 344444444444 578999999987 4443221 11111111 222221 2344444 44556666 8999999997
No 74
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=50.79 E-value=2.5e+02 Score=27.37 Aligned_cols=112 Identities=16% Similarity=0.118 Sum_probs=61.2
Q ss_pred CCCCCHHHHHHHHHhhhhcCCcCC-CceEEEeccCCCCCCCChHHHHHHHHHHHhCCC----ccceEeecCCCCCCCCCC
Q 041263 54 HVYDNEKEVGAALKQFFSTGVVKR-DEMFITSKIWCCDLAPEDVPKALSRSLEHLQLD----YIDLYLIHWPFRTKPETR 128 (318)
Q Consensus 54 ~~YgsE~~lG~al~~~~~~~~~~R-~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d----~iDl~~lH~p~~~~~~~~ 128 (318)
-.||.|.-|-++|++..... +. +=++|.|-... ..--+++..-+++.-++++-+ .+.++.+|.|.....
T Consensus 66 ~VfGG~~~L~~~I~~~~~~~--~~p~~I~V~tTC~~-eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs--- 139 (454)
T cd01973 66 AVFGGAKRVEEGVLVLARRY--PDLRVIPIITTCST-EIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGS--- 139 (454)
T ss_pred eEECcHHHHHHHHHHHHHhc--CCCCEEEEECCchH-hhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCC---
Confidence 45788888888888763222 22 33667666532 222345555555443333211 478899999877532
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHH--------cCCeeEEEeeC--CChHHHHHHHHhCCCCCe
Q 041263 129 GFEPDIMLPLCLPETWAAMEKLYD--------SGKARAIGVSN--FSTKKLKDLCSYAKVKPA 181 (318)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~L~~l~~--------~G~ir~iGvs~--~~~~~l~~~~~~~~~~~~ 181 (318)
...+...+++.+.+ +++|--||-.+ .+.+.+.++++..++++.
T Consensus 140 ----------~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~ 192 (454)
T cd01973 140 ----------MVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEAN 192 (454)
T ss_pred ----------HHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 12233334433332 46677776332 234667777777765443
No 75
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=50.45 E-value=1.4e+02 Score=24.93 Aligned_cols=93 Identities=9% Similarity=-0.029 Sum_probs=52.1
Q ss_pred HHHcCCeeEEEeeCCChHHH----HHHHHhCCCCCeeEEeeecCCCCC----------hHHHHHHHhcCcEEEEecC-CC
Q 041263 150 LYDSGKARAIGVSNFSTKKL----KDLCSYAKVKPAVNQVECHPVWQQ----------PALHEYCKSSGVHLTAYSP-LG 214 (318)
Q Consensus 150 l~~~G~ir~iGvs~~~~~~l----~~~~~~~~~~~~~~q~~~~~~~~~----------~~l~~~~~~~gi~v~a~~p-l~ 214 (318)
+.....|...|++..+...+ .+.+.....+.+++++--|=..+. ..+++.++++|..++...+ +-
T Consensus 40 l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~P 119 (191)
T PRK10528 40 WQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIRLP 119 (191)
T ss_pred HhhCCCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 34556799999999886543 333322334556666666655432 3578888888877655421 10
Q ss_pred CCCCCCcccccchHHHHHHHHHhCCCHHH
Q 041263 215 SPGSWVKGEILKEAILQEIAGELNKSPAQ 243 (318)
Q Consensus 215 ~g~l~~~~~~~~~~~l~~la~~~~~s~~q 243 (318)
..........-++.++++|+++++....
T Consensus 120 -~~~~~~~~~~~~~~~~~~a~~~~v~~id 147 (191)
T PRK10528 120 -ANYGRRYNEAFSAIYPKLAKEFDIPLLP 147 (191)
T ss_pred -CcccHHHHHHHHHHHHHHHHHhCCCccH
Confidence 0000000111234577888888876554
No 76
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=49.91 E-value=1.4e+02 Score=26.51 Aligned_cols=105 Identities=13% Similarity=0.052 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeeEEEeeC---CChHHH
Q 041263 94 EDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDS-GKARAIGVSN---FSTKKL 169 (318)
Q Consensus 94 ~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvs~---~~~~~l 169 (318)
..-+..+-+.|.++|+++|.+-+......... ... ......++.++.+++. +..+...+.. .....+
T Consensus 21 ~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~-~~~--------~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i 91 (263)
T cd07943 21 LEQVRAIARALDAAGVPLIEVGHGDGLGGSSL-NYG--------FAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDL 91 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEeecCCCCCCccc-ccC--------CCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHH
Confidence 35556677779999999999986532111000 000 0011245566666443 3466665542 234556
Q ss_pred HHHHHhCCCCCeeEEeeecCCC--CChHHHHHHHhcCcEEEEe
Q 041263 170 KDLCSYAKVKPAVNQVECHPVW--QQPALHEYCKSSGVHLTAY 210 (318)
Q Consensus 170 ~~~~~~~~~~~~~~q~~~~~~~--~~~~l~~~~~~~gi~v~a~ 210 (318)
+.+.+. ++ +.+.+....-+ .-.+.+++++++|+.+...
T Consensus 92 ~~a~~~-g~--~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 92 KMAADL-GV--DVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHHHc-CC--CEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 555542 33 44444332222 1256888899999876554
No 77
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=49.85 E-value=1.2e+02 Score=26.81 Aligned_cols=151 Identities=18% Similarity=0.170 Sum_probs=87.1
Q ss_pred HHHHHHHHHcCCCEEeCCCCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceE
Q 041263 36 GEAVIAAVKAGYRHIDCAHVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLY 115 (318)
Q Consensus 36 ~~~l~~Al~~Gi~~~DtA~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~ 115 (318)
.+.+..|-+.|. ++ .. ...++.++++..-... ....+.++..+....+....+...+.+-+++.+++.- -+
T Consensus 52 ~~Fi~~aE~~gl--i~---~l-~~~v~~~a~~~~~~~~--~~~~~~l~iNis~~~l~~~~~~~~l~~~l~~~~~~~~-~l 122 (256)
T COG2200 52 GEFIPLAEETGL--IV---EL-GRWVLEEACRQLRTWP--RAGPLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPH-RL 122 (256)
T ss_pred HHHHHHHHHcCC--HH---HH-HHHHHHHHHHHHHhhh--hcCCceEEEEcCHHHhCCchHHHHHHHHHHHhCCCcc-eE
Confidence 345555555554 00 00 3566777777652111 0014778777765444456777788888999886543 22
Q ss_pred eecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCCh--HHHHHHHHhCCCCCeeEEeeecCCCC-
Q 041263 116 LIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFST--KKLKDLCSYAKVKPAVNQVECHPVWQ- 192 (318)
Q Consensus 116 ~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~~- 192 (318)
.+-- .+...- .....+...+..|++.|- .|.+.+|.. ..+..+.+ .+++.+-+.-+....
T Consensus 123 ~lEi-tE~~~~-----------~~~~~~~~~l~~L~~~G~--~ialDDFGtG~ssl~~L~~---l~~d~iKID~~fi~~i 185 (256)
T COG2200 123 VLEI-TESALI-----------DDLDTALALLRQLRELGV--RIALDDFGTGYSSLSYLKR---LPPDILKIDRSFVRDL 185 (256)
T ss_pred EEEE-eCchhh-----------cCHHHHHHHHHHHHHCCC--eEEEECCCCCHHHHHHHhh---CCCCeEEECHHHHhhc
Confidence 2221 111100 233467789999999993 478888773 33444433 455555544433321
Q ss_pred --C-------hHHHHHHHhcCcEEEEecC
Q 041263 193 --Q-------PALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 193 --~-------~~l~~~~~~~gi~v~a~~p 212 (318)
+ ..++..|++.|+.+++-..
T Consensus 186 ~~~~~~~~iv~~iv~la~~l~~~vvaEGV 214 (256)
T COG2200 186 ETDARDQAIVRAIVALAHKLGLTVVAEGV 214 (256)
T ss_pred ccCcchHHHHHHHHHHHHHCCCEEEEeec
Confidence 1 4688899999999999743
No 78
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=49.73 E-value=52 Score=32.24 Aligned_cols=106 Identities=14% Similarity=0.169 Sum_probs=60.1
Q ss_pred CCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH----cCCeeEEEee--CCC
Q 041263 92 APEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYD----SGKARAIGVS--NFS 165 (318)
Q Consensus 92 ~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~----~G~ir~iGvs--~~~ 165 (318)
+++.|.+.++. +++.|...+-|+.=..|.. .+.+-+.+.++.+++ .|.++.++++ ..+
T Consensus 116 s~EEI~~ea~~-~~~~G~~~i~LvsGe~p~~---------------~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt 179 (469)
T PRK09613 116 TQEEIREEVKA-LEDMGHKRLALVAGEDPPN---------------CDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTT 179 (469)
T ss_pred CHHHHHHHHHH-HHHCCCCEEEEEeCCCCCC---------------CCHHHHHHHHHHHHHhccccCcceeeEEEeecCC
Confidence 45667777764 5678877765542222211 345556666666665 5677766664 455
Q ss_pred hHHHHHHHHhCCCCCeeEEeeecC-----CCC-----C----hHHHHHHHhcCcEEEEecCC
Q 041263 166 TKKLKDLCSYAKVKPAVNQVECHP-----VWQ-----Q----PALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~q~~~~~-----~~~-----~----~~l~~~~~~~gi~v~a~~pl 213 (318)
.+++.++.+.+-....++|--||. +++ . -+.++.+++.|+.-++...+
T Consensus 180 ~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L 241 (469)
T PRK09613 180 VENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVL 241 (469)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEE
Confidence 677777766443333444444331 111 1 35788899999974444333
No 79
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=49.21 E-value=2.1e+02 Score=26.20 Aligned_cols=99 Identities=11% Similarity=0.082 Sum_probs=64.5
Q ss_pred HHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCee-EEEeeCCC---hHHHHHHHHhCC-
Q 041263 103 SLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKAR-AIGVSNFS---TKKLKDLCSYAK- 177 (318)
Q Consensus 103 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~---~~~l~~~~~~~~- 177 (318)
..++.| .|++-+|-....-. ....+..++.+.|+++.|.=++- -||=|... +..++++.+.+.
T Consensus 159 ~Vk~fg---admvTiHlIsTdPk---------i~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEG 226 (403)
T COG2069 159 CVKKFG---ADMVTIHLISTDPK---------IKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEG 226 (403)
T ss_pred HHHHhC---CceEEEEeecCCcc---------ccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcC
Confidence 345677 67888886533211 11167899999999999987765 45666544 677888777664
Q ss_pred CCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCCCC
Q 041263 178 VKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGS 215 (318)
Q Consensus 178 ~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~ 215 (318)
.++... ..|+-..-..+.+.|.++|=.|++|+++.-
T Consensus 227 eRclLa--SanldlDy~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 227 ERCLLA--SANLDLDYERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred ceEEee--ccccccCHHHHHHHHHhcCceEEEeeccCh
Confidence 222222 222222225788999999999999999843
No 80
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=48.30 E-value=37 Score=30.63 Aligned_cols=49 Identities=14% Similarity=0.239 Sum_probs=40.5
Q ss_pred CChHHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCCC
Q 041263 164 FSTKKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLG 214 (318)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~ 214 (318)
|+...+.++.+..+++..++-..+|+.+. ++.++|++.|+.+++.-|+.
T Consensus 201 hD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~~~~e~gi~il~~IPyd 249 (284)
T COG1149 201 HDLKRALELVEHFGIPTGIVINRYNLGDS--EIEEYCEEEGIPILGEIPYD 249 (284)
T ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCch--HHHHHHHHcCCCeeEECCcc
Confidence 44566677777788888888888866665 89999999999999999994
No 81
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=48.09 E-value=2.3e+02 Score=26.32 Aligned_cols=98 Identities=5% Similarity=-0.041 Sum_probs=47.6
Q ss_pred CCceEEEeccCCCCCCCC--hHHH--HHHHHHHHhCCCccceEeecCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHH
Q 041263 77 RDEMFITSKIWCCDLAPE--DVPK--ALSRSLEHLQLDYIDLYLIHWPFRTKPETRGF-EPDIMLPLCLPETWAAMEKLY 151 (318)
Q Consensus 77 R~~~~i~tK~~~~~~~~~--~i~~--~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~l~ 151 (318)
..++.|..|++..+.... .... .+-+.|+..| .+|++-+|............ ..... ....-.|+....++
T Consensus 206 g~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G--~vd~i~vs~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ik 281 (343)
T cd04734 206 GPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEG--LIDYVNVSAGSYYTLLGLAHVVPSMG--MPPGPFLPLAARIK 281 (343)
T ss_pred CCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcC--CCCEEEeCCCCCCcccccccccCCCC--CCcchhHHHHHHHH
Confidence 467889999876543211 1222 3333444555 35666565332211100000 00000 11111245555666
Q ss_pred HcCCeeEEEeeCC-ChHHHHHHHHhCCC
Q 041263 152 DSGKARAIGVSNF-STKKLKDLCSYAKV 178 (318)
Q Consensus 152 ~~G~ir~iGvs~~-~~~~l~~~~~~~~~ 178 (318)
+.=++-=+++.+. +++.++++++....
T Consensus 282 ~~~~ipvi~~G~i~~~~~~~~~l~~~~~ 309 (343)
T cd04734 282 QAVDLPVFHAGRIRDPAEAEQALAAGHA 309 (343)
T ss_pred HHcCCCEEeeCCCCCHHHHHHHHHcCCC
Confidence 5556666777764 68888888876544
No 82
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=48.00 E-value=99 Score=25.01 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=48.8
Q ss_pred eeEEEeeCCC--hHHHHHHHHhCCCCCeeEEeeecCCCCC-hHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHH
Q 041263 156 ARAIGVSNFS--TKKLKDLCSYAKVKPAVNQVECHPVWQQ-PALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQE 232 (318)
Q Consensus 156 ir~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~ 232 (318)
+..+|+..|+ ...+..+++.+++ .+ -+....+. .+.+..|-++++.++..|.+.++ .....+.+.+
T Consensus 17 vak~GlDgHd~gakvia~~l~d~Gf--eV---i~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~------h~~l~~~lve 85 (143)
T COG2185 17 VAKLGLDGHDRGAKVIARALADAGF--EV---INLGLFQTPEEAVRAAVEEDVDVIGVSSLDGG------HLTLVPGLVE 85 (143)
T ss_pred EeccCccccccchHHHHHHHHhCCc--eE---EecCCcCCHHHHHHHHHhcCCCEEEEEeccch------HHHHHHHHHH
Confidence 4467888888 4667888887765 33 23333333 68899999999999999999665 3333455555
Q ss_pred HHHHhC
Q 041263 233 IAGELN 238 (318)
Q Consensus 233 la~~~~ 238 (318)
.+++.|
T Consensus 86 ~lre~G 91 (143)
T COG2185 86 ALREAG 91 (143)
T ss_pred HHHHhC
Confidence 555555
No 83
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=47.70 E-value=2.5e+02 Score=26.55 Aligned_cols=224 Identities=14% Similarity=0.085 Sum_probs=0.0
Q ss_pred CCccCccccccccCCcchHHHHHHHHHHcCCCEEeCCCCCC--CHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCC
Q 041263 17 GAKIPSVGLGTWKAPPGEVGEAVIAAVKAGYRHIDCAHVYD--NEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPE 94 (318)
Q Consensus 17 g~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg--sE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~ 94 (318)
|+.|.--.--..+.+++...++++.+.+.|...|=-++..| ....+.+.++.. ++.+ ...++.|.++.-
T Consensus 129 G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l-------~~~~--~~~l~~H~Hnd~ 199 (378)
T PRK11858 129 GLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKEL-------VEAV--DIPIEVHCHNDF 199 (378)
T ss_pred CCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHH-------HHhc--CCeEEEEecCCc
Q ss_pred hHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeC-CChHHHHHHH
Q 041263 95 DVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSN-FSTKKLKDLC 173 (318)
Q Consensus 95 ~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~ 173 (318)
.+--+---.--+-|.+++|.=+.=-=.+..- .+.+++..+|+.. .|+.. ++.+.+..+.
T Consensus 200 GlA~AN~laAv~aGa~~vd~tv~GlGeraGN------------a~lE~vv~~L~~~--------~g~~~~idl~~l~~~s 259 (378)
T PRK11858 200 GMATANALAGIEAGAKQVHTTVNGLGERAGN------------AALEEVVMALKYL--------YGIDLGIDTERLYELS 259 (378)
T ss_pred CHHHHHHHHHHHcCCCEEEEeeccccccccC------------ccHHHHHHHHHHH--------hCCCCCcCHHHHHHHH
Q ss_pred HhCCCCCeeEEeeecCCCCChHHHHHHHhcCcE-------EEEecCCCCCCCCCcccccch-----HHHHHHHHHhCCCH
Q 041263 174 SYAKVKPAVNQVECHPVWQQPALHEYCKSSGVH-------LTAYSPLGSPGSWVKGEILKE-----AILQEIAGELNKSP 241 (318)
Q Consensus 174 ~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~-------v~a~~pl~~g~l~~~~~~~~~-----~~l~~la~~~~~s~ 241 (318)
+... .....+.....+=-+--.++++.||. -..|.|+.-..+-.+..+.-. ..+....+++|+.+
T Consensus 260 ~~v~---~~~~~~~~~~~pivG~~~F~h~sGiH~~gi~k~~~~Ye~~~P~~vG~~~~~~~g~~SG~~~v~~~l~~~g~~~ 336 (378)
T PRK11858 260 RLVS---KASGIPVPPNKAIVGENAFAHESGIHVDGVLKNPLTYEPFLPEEVGLERRIVLGKHSGRHALKNKLKEYGIEL 336 (378)
T ss_pred HHHH---HHhCcCCCCCCccccchhhhhhccccHHHHhCCcccccccCHHHcCCcccccccccccHHHHHHHHHHcCCCC
Q ss_pred HHHHHHHHhhcCCeEecCCCCHHHHHHhhcccCCCCCHHHHHHH
Q 041263 242 AQVALRWGLQSGHSILPKSVNESRIKENFNLFDWSIPPKLFSRF 285 (318)
Q Consensus 242 ~q~al~~~l~~~~~vl~g~~~~~~l~enl~~~~~~L~~~~~~~l 285 (318)
..-.+.-++. .+++.......+++++|+..|
T Consensus 337 ~~~~~~~~~~-------------~vk~~~~~~~~~~~~~el~~~ 367 (378)
T PRK11858 337 SREELCELLE-------------KVKELSERKKRSLTDEELKEL 367 (378)
T ss_pred CHHHHHHHHH-------------HHHHHHHhcCCCCCHHHHHHH
No 84
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=47.29 E-value=2e+02 Score=25.38 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=84.2
Q ss_pred CcchHHHHHHHHHHcCCCEEeCCCCCCCHHHH--HHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhC
Q 041263 31 PPGEVGEAVIAAVKAGYRHIDCAHVYDNEKEV--GAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQ 108 (318)
Q Consensus 31 ~~~~~~~~l~~Al~~Gi~~~DtA~~YgsE~~l--G~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg 108 (318)
++++..+.++.+.+.|++.|..--.-..+.-+ =+++++. -.+++.|.-... ..++.+...+ +-+.|+.+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~------~g~~~~l~vDan-~~~~~~~a~~-~~~~l~~~- 155 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA------VGDDAELRVDAN-RGWTPKQAIR-ALRALEDL- 155 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh------cCCCCEEEEeCC-CCcCHHHHHH-HHHHHHhc-
Confidence 34556677777889999988753221122222 2344543 233455544432 1222222111 12233333
Q ss_pred CCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCee-EEEeeCCChHHHHHHHHhCCCCCeeEEeee
Q 041263 109 LDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKAR-AIGVSNFSTKKLKDLCSYAKVKPAVNQVEC 187 (318)
Q Consensus 109 ~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~ 187 (318)
++.++..|-.. +-++.+.+|++.-.+. ..|=+-+++..+..+++... ++++|+..
T Consensus 156 ----~i~~iEeP~~~------------------~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~--~d~v~~k~ 211 (265)
T cd03315 156 ----GLDYVEQPLPA------------------DDLEGRAALARATDTPIMADESAFTPHDAFRELALGA--ADAVNIKT 211 (265)
T ss_pred ----CCCEEECCCCc------------------ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCC--CCEEEEec
Confidence 44555665431 1246677777776554 44455667888888777644 47777775
Q ss_pred cCCCC---ChHHHHHHHhcCcEEEEecCCC
Q 041263 188 HPVWQ---QPALHEYCKSSGVHLTAYSPLG 214 (318)
Q Consensus 188 ~~~~~---~~~l~~~~~~~gi~v~a~~pl~ 214 (318)
...-- -..+...|+++|+.++..+.+.
T Consensus 212 ~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~ 241 (265)
T cd03315 212 AKTGGLTKAQRVLAVAEALGLPVMVGSMIE 241 (265)
T ss_pred ccccCHHHHHHHHHHHHHcCCcEEecCccc
Confidence 54432 2578888999999999886653
No 85
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=46.75 E-value=2.5e+02 Score=26.35 Aligned_cols=99 Identities=14% Similarity=0.053 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHH
Q 041263 94 EDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLC 173 (318)
Q Consensus 94 ~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (318)
..-+..+-+.|.++|+++|+.-..-.|.. .|.. .+..++++.+.+ ...++..++. .....++.++
T Consensus 67 ~e~Ki~ia~~L~~~GV~~IEvGs~vspk~-vPqm----------ad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~ 131 (347)
T PLN02746 67 TSVKVELIQRLVSSGLPVVEATSFVSPKW-VPQL----------ADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAI 131 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCccc-cccc----------ccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHH
Confidence 45677888889999999999874444322 1110 223455555543 2334545554 4778888887
Q ss_pred HhCCCCCeeEEeee--cCCC------CC--------hHHHHHHHhcCcEEEEe
Q 041263 174 SYAKVKPAVNQVEC--HPVW------QQ--------PALHEYCKSSGVHLTAY 210 (318)
Q Consensus 174 ~~~~~~~~~~q~~~--~~~~------~~--------~~l~~~~~~~gi~v~a~ 210 (318)
+. +. +.+.+.+ +... .. .+++++++++|+.+.++
T Consensus 132 ~~-g~--~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 132 AA-GA--KEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred Hc-Cc--CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 74 33 3333332 2111 11 35788999999998533
No 86
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=46.15 E-value=2.4e+02 Score=25.98 Aligned_cols=149 Identities=13% Similarity=0.040 Sum_probs=82.8
Q ss_pred cccccccCCcchHHHHHHHHHHcCCCEEe----------CCCCCCC-----HHHHHHHHHhhhhcCCcCCCceEEEeccC
Q 041263 23 VGLGTWKAPPGEVGEAVIAAVKAGYRHID----------CAHVYDN-----EKEVGAALKQFFSTGVVKRDEMFITSKIW 87 (318)
Q Consensus 23 lglG~~~~~~~~~~~~l~~Al~~Gi~~~D----------tA~~Ygs-----E~~lG~al~~~~~~~~~~R~~~~i~tK~~ 87 (318)
+++-.+..++++..+..+.+.+.|+..|| +...||+ -..+.+.++... ..-++-|+.|+-
T Consensus 57 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~-----~~~~~PVsvKiR 131 (318)
T TIGR00742 57 VALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQ-----EAVNIPVTVKHR 131 (318)
T ss_pred EEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHH-----HHhCCCeEEEEe
Confidence 44555556778888888888889999999 5566772 455666666541 112456788873
Q ss_pred CCCCCCChHH--HHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeeEEEeeCC
Q 041263 88 CCDLAPEDVP--KALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSG-KARAIGVSNF 164 (318)
Q Consensus 88 ~~~~~~~~i~--~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~ 164 (318)
...-+.+... ..+-+.++..| +|.+-+|.-.....+.....+.. .. .--|+...+++++- .|--||..+.
T Consensus 132 ~g~~~~~~~~~~~~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~---~~-~~~~~~i~~vk~~~~~ipVi~NGdI 204 (318)
T TIGR00742 132 IGIDPLDSYEFLCDFVEIVSGKG---CQNFIVHARKAWLSGLSPKENRE---IP-PLRYERVYQLKKDFPHLTIEINGGI 204 (318)
T ss_pred cCCCCcchHHHHHHHHHHHHHcC---CCEEEEeCCchhhcCCCcccccc---CC-chhHHHHHHHHHhCCCCcEEEECCc
Confidence 2211112212 22333444555 88889997543111111000000 11 12477777888765 6777887664
Q ss_pred C-hHHHHHHHHhCCCCCeeEEeee
Q 041263 165 S-TKKLKDLCSYAKVKPAVNQVEC 187 (318)
Q Consensus 165 ~-~~~l~~~~~~~~~~~~~~q~~~ 187 (318)
. .+++.+.+. ..+.+++-=
T Consensus 205 ~s~~da~~~l~----g~dgVMigR 224 (318)
T TIGR00742 205 KNSEQIKQHLS----HVDGVMVGR 224 (318)
T ss_pred CCHHHHHHHHh----CCCEEEECH
Confidence 4 666666653 246666553
No 87
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=45.41 E-value=1.4e+02 Score=25.78 Aligned_cols=70 Identities=11% Similarity=0.040 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCee-EEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCC---ChHHHHHHHhcCcEEEEecCCCC
Q 041263 144 WAAMEKLYDSGKAR-AIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQ---QPALHEYCKSSGVHLTAYSPLGS 215 (318)
Q Consensus 144 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~l~~~~~~~gi~v~a~~pl~~ 215 (318)
++.+.+|++...+. ..+=|.++.+.+..+++... .+++|...+..-- -..+...|+++|+.++.++.+..
T Consensus 134 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~--~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s 207 (229)
T cd00308 134 LEGYAALRRRTGIPIAADESVTTVDDALEALELGA--VDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLES 207 (229)
T ss_pred HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCC--CCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 46677788777665 33445566777766665533 4777776554422 25788899999999999877643
No 88
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=45.27 E-value=1.9e+02 Score=25.38 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=55.1
Q ss_pred HHHHcCCeeEEEeeCCC---hHHHHHHHHhCCC---CCee-E--EeeecCCCCC-----hHHHHHHHhcCcEEEEecCCC
Q 041263 149 KLYDSGKARAIGVSNFS---TKKLKDLCSYAKV---KPAV-N--QVECHPVWQQ-----PALHEYCKSSGVHLTAYSPLG 214 (318)
Q Consensus 149 ~l~~~G~ir~iGvs~~~---~~~l~~~~~~~~~---~~~~-~--q~~~~~~~~~-----~~l~~~~~~~gi~v~a~~pl~ 214 (318)
+..+.|.=-++++.-|+ |..++..+..... .-++ . .+.+...... .+-++.|+++++.++.+.|-.
T Consensus 58 Ra~~~Gl~~~vavGvHPr~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~ 137 (254)
T COG1099 58 RAEKAGLKLKVAVGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPRR 137 (254)
T ss_pred hHHhhCceeeEEeccCCCCCCchHHHHHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCC
Confidence 44677888888888887 3345444443221 1112 2 3333333333 245778999999999999985
Q ss_pred CCCCCCcccccchHHHHHHHHHhCCCHHHHHH
Q 041263 215 SPGSWVKGEILKEAILQEIAGELNKSPAQVAL 246 (318)
Q Consensus 215 ~g~l~~~~~~~~~~~l~~la~~~~~s~~q~al 246 (318)
.- ..--+.+-+++.+.|+.+.++.+
T Consensus 138 nK-------~e~t~~ildi~~~~~l~~~lvvI 162 (254)
T COG1099 138 NK-------KEATSKILDILIESGLKPSLVVI 162 (254)
T ss_pred cc-------hhHHHHHHHHHHHcCCChhheeh
Confidence 32 12235677788888887766543
No 89
>PLN02489 homocysteine S-methyltransferase
Probab=44.96 E-value=2.6e+02 Score=25.98 Aligned_cols=169 Identities=15% Similarity=0.115 Sum_probs=93.0
Q ss_pred CCceEEEeccCCCC----------------CCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCH
Q 041263 77 RDEMFITSKIWCCD----------------LAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCL 140 (318)
Q Consensus 77 R~~~~i~tK~~~~~----------------~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~ 140 (318)
+.+++|+.-+++.. .+.+.+++...+.++.|--.-+|++.+-.. ..+
T Consensus 130 ~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~-----------------~~l 192 (335)
T PLN02489 130 YRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETI-----------------PNK 192 (335)
T ss_pred CCCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc-----------------CCh
Confidence 34678888886522 233566777777777764456999998864 334
Q ss_pred HHHHHHHHHHHHcC--CeeEEEeeCCC------hHHHHHHHHhC--CCCCeeEEeeecCCCCChHHHHHHHhc-CcEEEE
Q 041263 141 PETWAAMEKLYDSG--KARAIGVSNFS------TKKLKDLCSYA--KVKPAVNQVECHPVWQQPALHEYCKSS-GVHLTA 209 (318)
Q Consensus 141 ~~~~~~L~~l~~~G--~ir~iGvs~~~------~~~l~~~~~~~--~~~~~~~q~~~~~~~~~~~l~~~~~~~-gi~v~a 209 (318)
.|+..+++-+++.+ +--.+.++..+ ...+.++++.. ...++.+-+++.....-..+++..+.. .+.+++
T Consensus 193 ~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~pl~v 272 (335)
T PLN02489 193 LEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGINCTPPRFIHGLILSIRKVTSKPIVV 272 (335)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHhhcCCcEEE
Confidence 67777777777664 55556665422 12233333222 124566777764211113555555544 677777
Q ss_pred ecCCCCCCCC-Cc-ccccchHHHHHHHHHhCCC---HHHHHHHHHhhcCCeEecCC--CCHHHHHHhhcccC
Q 041263 210 YSPLGSPGSW-VK-GEILKEAILQEIAGELNKS---PAQVALRWGLQSGHSILPKS--VNESRIKENFNLFD 274 (318)
Q Consensus 210 ~~pl~~g~l~-~~-~~~~~~~~l~~la~~~~~s---~~q~al~~~l~~~~~vl~g~--~~~~~l~enl~~~~ 274 (318)
|--- |... .. .... ..++.+ .++.+.+|. ..|+.+|=|. ++|+|+++.-+.++
T Consensus 273 yPNa--G~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~Ga~iIGGCCgt~P~hI~al~~~l~ 332 (335)
T PLN02489 273 YPNS--GETYDGEAKEWV---------ESTGVSDEDFVSYVNKWR-DAGASLIGGCCRTTPNTIRAISKALS 332 (335)
T ss_pred ECCC--CCCCCCccCccc---------CCCCCCHHHHHHHHHHHH-HCCCcEEeeCCCCCHHHHHHHHHHHh
Confidence 6432 2111 00 0000 012233 356677785 4577777665 89999988766554
No 90
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=44.95 E-value=3.1e+02 Score=26.77 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=62.8
Q ss_pred CCCCCHHHHHHHHHhhhhcCCcC-CCceEEEeccCCCCCCCChHHHHHHHHHHHhCCC----ccceEeecCCCCCCCCCC
Q 041263 54 HVYDNEKEVGAALKQFFSTGVVK-RDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLD----YIDLYLIHWPFRTKPETR 128 (318)
Q Consensus 54 ~~YgsE~~lG~al~~~~~~~~~~-R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d----~iDl~~lH~p~~~~~~~~ 128 (318)
-.||.|.-|-++|++..... + .+=++|.|-... ..--+++..-+++.-+++.-+ .+.++.+|.|.......
T Consensus 69 vVfGG~~kL~~aI~~~~~~~--~~p~~I~V~ttC~~-eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs~~- 144 (457)
T TIGR02932 69 AVFGGAKRIEEGVLTLARRY--PNLRVIPIITTCST-ETIGDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGSQV- 144 (457)
T ss_pred eEECcHHHHHHHHHHHHHhC--CCCCEEEEECCchH-HhhcCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCcHH-
Confidence 45788888888888863322 2 233666665532 222345555555543333222 37889999987754211
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH-H-----cCCeeEEEeeCC--ChHHHHHHHHhCCCCCee
Q 041263 129 GFEPDIMLPLCLPETWAAMEKLY-D-----SGKARAIGVSNF--STKKLKDLCSYAKVKPAV 182 (318)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~L~~l~-~-----~G~ir~iGvs~~--~~~~l~~~~~~~~~~~~~ 182 (318)
.-...++++|-+.. + +++|-=||-.+. +.+.+.++++..+.++.+
T Consensus 145 ---------~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn~ 197 (457)
T TIGR02932 145 ---------TGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDANI 197 (457)
T ss_pred ---------HHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 12233444443222 2 366777764332 455777788877664443
No 91
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=44.89 E-value=64 Score=30.24 Aligned_cols=69 Identities=12% Similarity=0.005 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCee-EEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCC---CChHHHHHHHhcCcEEEEecCC
Q 041263 143 TWAAMEKLYDSGKAR-AIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVW---QQPALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 143 ~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~v~a~~pl 213 (318)
-++.+.+|++...+. ..|=|-+++..+..+++... ++++|......- +-.++.+.|+++|+.+..++..
T Consensus 202 d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a--~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 202 NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERL--IDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCC--CCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 367788888887665 66777788888888877643 477777654432 2257888999999999876543
No 92
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=44.58 E-value=1.1e+02 Score=26.75 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=47.6
Q ss_pred ChHHHHHHHHhCCCCCeeE--EeeecCCCCC-----hHHHHHHHhcCcEEEEecCCCCCCCCCc----ccc-cchHHHHH
Q 041263 165 STKKLKDLCSYAKVKPAVN--QVECHPVWQQ-----PALHEYCKSSGVHLTAYSPLGSPGSWVK----GEI-LKEAILQE 232 (318)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~--q~~~~~~~~~-----~~l~~~~~~~gi~v~a~~pl~~g~l~~~----~~~-~~~~~l~~ 232 (318)
++.++..+.+.+++.+..+ -.+||.++.+ .+++++++.-|-.-+.+-|+..|...+. .++ ..-+.++.
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~~vr~~~lv~AlkaLkp 129 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGTAVRREDLVEALKALKP 129 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCcccchHHHHHHHHHhhH
Confidence 4667777777777644433 2344555543 4789999999999999999977542221 111 12256777
Q ss_pred HHHHhCC
Q 041263 233 IAGELNK 239 (318)
Q Consensus 233 la~~~~~ 239 (318)
+-+++|+
T Consensus 130 il~~~gi 136 (272)
T COG4130 130 ILDEYGI 136 (272)
T ss_pred HHHHhCc
Confidence 7777775
No 93
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=43.97 E-value=1.8e+02 Score=23.89 Aligned_cols=104 Identities=14% Similarity=0.014 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCCCC--CeeEEeeecCCCC-----ChHHHHHHHhcCcEEEEe
Q 041263 138 LCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAKVK--PAVNQVECHPVWQ-----QPALHEYCKSSGVHLTAY 210 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~--~~~~q~~~~~~~~-----~~~l~~~~~~~gi~v~a~ 210 (318)
.+-.++++.--+--++.-|++|=|.+-+.....++++...-. .+++-..+..-.. +.++.+..+++|..|..-
T Consensus 10 eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~ 89 (186)
T COG1751 10 ENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQ 89 (186)
T ss_pred cchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeee
Confidence 334667776666667888999999887877766666665433 4444444333222 267899999999999887
Q ss_pred cCCCCCCCCCcccccchHHHHHHHHHhC-CCHHHH---HHHHHhhcCC
Q 041263 211 SPLGSPGSWVKGEILKEAILQEIAGELN-KSPAQV---ALRWGLQSGH 254 (318)
Q Consensus 211 ~pl~~g~l~~~~~~~~~~~l~~la~~~~-~s~~q~---al~~~l~~~~ 254 (318)
|-.-+|. =+.|.+++| .+|.++ .|| .-++|+
T Consensus 90 sHalSg~------------eRsis~kfGG~~p~eiiAetLR-~fg~G~ 124 (186)
T COG1751 90 SHALSGV------------ERSISRKFGGYSPLEIIAETLR-MFGQGV 124 (186)
T ss_pred hhhhhcc------------hhhhhhhcCCcchHHHHHHHHH-HhcCCc
Confidence 7554543 134455553 666554 344 345553
No 94
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=43.27 E-value=1e+02 Score=27.63 Aligned_cols=78 Identities=19% Similarity=0.144 Sum_probs=51.1
Q ss_pred cCCcch-HHHHHHHHHHcCCCEEeCCCCCC----C---HHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHH
Q 041263 29 KAPPGE-VGEAVIAAVKAGYRHIDCAHVYD----N---EKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKAL 100 (318)
Q Consensus 29 ~~~~~~-~~~~l~~Al~~Gi~~~DtA~~Yg----s---E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~v 100 (318)
..++++ ...+.+.|.++|..|+-|+..|+ + -+++-+.+++. + ...+ +.-|....-.+.+....-+
T Consensus 142 ~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~---~--~~~~--vgIKAsGGIrt~~~A~~~i 214 (257)
T PRK05283 142 ELKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM---G--VAKT--VGFKPAGGVRTAEDAAQYL 214 (257)
T ss_pred ccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc---c--cCCC--eeEEccCCCCCHHHHHHHH
Confidence 355564 77888999999999999999996 2 23333333321 0 0122 4445433334567888888
Q ss_pred HHHHHHhCCCccc
Q 041263 101 SRSLEHLQLDYID 113 (318)
Q Consensus 101 e~SL~~Lg~d~iD 113 (318)
+..-+.||.++++
T Consensus 215 ~ag~~~lg~~~~~ 227 (257)
T PRK05283 215 ALADEILGADWAD 227 (257)
T ss_pred HHHHHHhChhhcC
Confidence 8888899988765
No 95
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=42.64 E-value=88 Score=25.14 Aligned_cols=63 Identities=5% Similarity=-0.030 Sum_probs=45.7
Q ss_pred CCCceEEEeccCCCCCCCChHHHHHHHHHHHhC--CCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 041263 76 KRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQ--LDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDS 153 (318)
Q Consensus 76 ~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 153 (318)
+|=.+.|+-|++. -.....+++.+.++++... ....|++++..+... .+..+..+.|..+.++
T Consensus 46 ~RlG~sVSKKvg~-AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~--------------~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK-AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ--------------PDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc-chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC--------------CCHHHHHHHHHHHHHH
Confidence 5778889999864 4457889999999999774 346899999876542 4456666666666554
No 96
>PLN02428 lipoic acid synthase
Probab=42.29 E-value=3e+02 Score=25.88 Aligned_cols=167 Identities=12% Similarity=0.096 Sum_probs=84.3
Q ss_pred CCcchHHHHHHHHHHcCCCEEeCC-------CCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHH
Q 041263 30 APPGEVGEAVIAAVKAGYRHIDCA-------HVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSR 102 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~DtA-------~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~ 102 (318)
.+.++..++.+.+.+.|++++=.. +..|. ..+.+.++..-... ..+.|.. ...++-. . ++
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga-~~~~elir~Ir~~~----P~i~Ie~--L~pdf~~---d---~e 196 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGS-GHFAETVRRLKQLK----PEILVEA--LVPDFRG---D---LG 196 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccH-HHHHHHHHHHHHhC----CCcEEEE--eCccccC---C---HH
Confidence 445666677888888898765221 12232 23444444431001 1233332 2222211 1 34
Q ss_pred HHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc--CCee----EEEeeCCChHHHHHHHHhC
Q 041263 103 SLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDS--GKAR----AIGVSNFSTKKLKDLCSYA 176 (318)
Q Consensus 103 SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--G~ir----~iGvs~~~~~~l~~~~~~~ 176 (318)
.|++|.-.-+|. +-|+++....-....... ....++.++.|+.+++. |..- -+|+ .-+.+++.+.++..
T Consensus 197 lL~~L~eAG~d~-i~hnlETv~rL~~~Ir~~---~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~L 271 (349)
T PLN02428 197 AVETVATSGLDV-FAHNIETVERLQRIVRDP---RAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDL 271 (349)
T ss_pred HHHHHHHcCCCE-EccCccCcHHHHHHhcCC---CCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHH
Confidence 444443333666 347766421100000000 13567888999999988 7653 3566 44566665554442
Q ss_pred -CCCCeeEEe-----------eecCCCCC---hHHHHHHHhcCcEEEEecCCC
Q 041263 177 -KVKPAVNQV-----------ECHPVWQQ---PALHEYCKSSGVHLTAYSPLG 214 (318)
Q Consensus 177 -~~~~~~~q~-----------~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~ 214 (318)
...++++.+ +++.+... ..+-+++.+.|..-++-+||-
T Consensus 272 relgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~v 324 (349)
T PLN02428 272 RAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLV 324 (349)
T ss_pred HHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCcc
Confidence 233333332 22222222 356777889999999999984
No 97
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=42.23 E-value=2.7e+02 Score=25.36 Aligned_cols=138 Identities=13% Similarity=0.129 Sum_probs=69.5
Q ss_pred CCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHH
Q 041263 91 LAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLK 170 (318)
Q Consensus 91 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~ 170 (318)
.+++.|.+.++... ..|..++-++--+.|+ .....+.+.++.+++.+. .+.++.+++..+.
T Consensus 36 ls~eeI~~~~~~~~-~~G~~~i~l~gg~~~~----------------~~~~~~~~i~~~Ik~~~~--~i~~~~~s~~e~~ 96 (309)
T TIGR00423 36 LSLEEILEKVKEAV-AKGATEVCIQGGLNPQ----------------LDIEYYEELFRAIKQEFP--DVHIHAFSPMEVY 96 (309)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEEecCCCCC----------------CCHHHHHHHHHHHHHHCC--CceEEecCHHHHH
Confidence 45567777776544 3577766665322221 233455677777777653 4555666655554
Q ss_pred HHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCCHHH--HHHHH
Q 041263 171 DLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQ--VALRW 248 (318)
Q Consensus 171 ~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q--~al~~ 248 (318)
.+....+. ...+.++..++.|+.-+. +.|. +.+..+..+.++.+ +.+..+ -++++
T Consensus 97 ~~~~~~g~-------------~~~e~l~~LkeAGl~~i~----~~g~-----E~l~~~~~~~i~~~-~~t~~~~l~~i~~ 153 (309)
T TIGR00423 97 FLAKNEGL-------------SIEEVLKRLKKAGLDSMP----GTGA-----EILDDSVRRKICPN-KLSSDEWLEVIKT 153 (309)
T ss_pred HHHHHcCC-------------CHHHHHHHHHHcCCCcCC----CCcc-----hhcCHHHHHhhCCC-CCCHHHHHHHHHH
Confidence 44333221 124778888888876442 1121 22222333333321 223333 24555
Q ss_pred HhhcC----CeEecCC-CCHHHHHHhh
Q 041263 249 GLQSG----HSILPKS-VNESRIKENF 270 (318)
Q Consensus 249 ~l~~~----~~vl~g~-~~~~~l~enl 270 (318)
+-..| ...++|. .+.++..+.+
T Consensus 154 a~~~Gi~~~s~~iiG~~Et~ed~~~~l 180 (309)
T TIGR00423 154 AHRLGIPTTATMMFGHVENPEHRVEHL 180 (309)
T ss_pred HHHcCCCceeeEEecCCCCHHHHHHHH
Confidence 55544 3556663 5555555544
No 98
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=42.12 E-value=1.2e+02 Score=27.91 Aligned_cols=135 Identities=16% Similarity=0.219 Sum_probs=71.8
Q ss_pred CccccccccCCcchHHHHHHHHHHcCCCEEe----------CCCCCC-----CHHHHHHHHHhhhhcCCcCCCceEEEec
Q 041263 21 PSVGLGTWKAPPGEVGEAVIAAVKAGYRHID----------CAHVYD-----NEKEVGAALKQFFSTGVVKRDEMFITSK 85 (318)
Q Consensus 21 s~lglG~~~~~~~~~~~~l~~Al~~Gi~~~D----------tA~~Yg-----sE~~lG~al~~~~~~~~~~R~~~~i~tK 85 (318)
.++++-.+..+++...+....+.+.|+..|| +...|| ....+.+.++.... .-++-|+.|
T Consensus 54 ~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~-----~~~~pvsvK 128 (309)
T PF01207_consen 54 RPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRK-----AVPIPVSVK 128 (309)
T ss_dssp -TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHH-----H-SSEEEEE
T ss_pred cceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhc-----ccccceEEe
Confidence 3455555556777777777777788999999 334566 35566666665421 112455555
Q ss_pred c--CCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeC
Q 041263 86 I--WCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSN 163 (318)
Q Consensus 86 ~--~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (318)
+ +..+ +.+.. ..+-..|+..| +|.+.+|.-..... ..-..-|+.+.++++.=.|--||=.+
T Consensus 129 iR~g~~~-~~~~~-~~~~~~l~~~G---~~~i~vH~Rt~~q~------------~~~~a~w~~i~~i~~~~~ipvi~NGd 191 (309)
T PF01207_consen 129 IRLGWDD-SPEET-IEFARILEDAG---VSAITVHGRTRKQR------------YKGPADWEAIAEIKEALPIPVIANGD 191 (309)
T ss_dssp EESECT---CHHH-HHHHHHHHHTT-----EEEEECS-TTCC------------CTS---HHHHHHCHHC-TSEEEEESS
T ss_pred ccccccc-chhHH-HHHHHHhhhcc---cceEEEecCchhhc------------CCcccchHHHHHHhhcccceeEEcCc
Confidence 5 4321 22223 33445666777 88999997543221 11245688888888887777666554
Q ss_pred C-ChHHHHHHHHhCC
Q 041263 164 F-STKKLKDLCSYAK 177 (318)
Q Consensus 164 ~-~~~~l~~~~~~~~ 177 (318)
. +++.+.++++.++
T Consensus 192 I~s~~d~~~~~~~tg 206 (309)
T PF01207_consen 192 IFSPEDAERMLEQTG 206 (309)
T ss_dssp --SHHHHHHHCCCH-
T ss_pred cCCHHHHHHHHHhcC
Confidence 3 3666666665533
No 99
>PRK05414 urocanate hydratase; Provisional
Probab=41.60 E-value=88 Score=30.81 Aligned_cols=128 Identities=20% Similarity=0.173 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCCEE--eCCCCC---C-------CHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCC-CCCh--------
Q 041263 37 EAVIAAVKAGYRHI--DCAHVY---D-------NEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDL-APED-------- 95 (318)
Q Consensus 37 ~~l~~Al~~Gi~~~--DtA~~Y---g-------sE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~-~~~~-------- 95 (318)
+-+++.-+.|+..+ =||.+| | .-..+..+-++.|. + .-+-++||++-++.... .|..
T Consensus 116 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g-~L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 193 (556)
T PRK05414 116 EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-G-DLAGRLVLTAGLGGMGGAQPLAATMAGAVC 193 (556)
T ss_pred HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-C-CCceeEEEEecCCccccccHHHHHhcCceE
Confidence 45566777888765 366554 2 34556666677764 3 36788999998864211 0000
Q ss_pred --HHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHH
Q 041263 96 --VPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLC 173 (318)
Q Consensus 96 --i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (318)
+.-.-...-+|+.+.|+|.+- .++.++++..++.+++|+..+||+-..-.+.+++++
T Consensus 194 i~vEvd~~ri~kR~~~gyld~~~---------------------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~ 252 (556)
T PRK05414 194 LAVEVDESRIDKRLRTGYLDEKA---------------------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELV 252 (556)
T ss_pred EEEEECHHHHHHHHhCCcceeEc---------------------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHH
Confidence 001123344688899988761 567899999999999999999999998888888888
Q ss_pred HhC-CCCCeeEEeee
Q 041263 174 SYA-KVKPAVNQVEC 187 (318)
Q Consensus 174 ~~~-~~~~~~~q~~~ 187 (318)
+.. .+++...|...
T Consensus 253 ~~~i~pDlvtDQTSa 267 (556)
T PRK05414 253 RRGIRPDLVTDQTSA 267 (556)
T ss_pred HcCCCCCccCcCccc
Confidence 763 23334457665
No 100
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=41.24 E-value=1e+02 Score=23.99 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=47.9
Q ss_pred CCCceEEEeccCCCCCCCChHHHHHHHHHHHhCC---CccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 041263 76 KRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQL---DYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYD 152 (318)
Q Consensus 76 ~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 152 (318)
+|=.+.|+-|++..-.....+++.+.+.++.+.. ...|++++-.+.... .+..+..+.|..|.+
T Consensus 47 ~R~G~~VsKK~~~~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~-------------~~~~~l~~~l~~ll~ 113 (122)
T PRK03031 47 TRFGISISQKVSKKAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAE-------------CNYEQFLQELEQLLI 113 (122)
T ss_pred cEEEEEEecccccchhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCccc-------------CCHHHHHHHHHHHHH
Confidence 5666777778765455678899999999987753 357999998876543 566778888877765
Q ss_pred c
Q 041263 153 S 153 (318)
Q Consensus 153 ~ 153 (318)
.
T Consensus 114 k 114 (122)
T PRK03031 114 Q 114 (122)
T ss_pred H
Confidence 5
No 101
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=41.14 E-value=2.8e+02 Score=25.23 Aligned_cols=125 Identities=13% Similarity=0.092 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHcCCeeEEEeeCC-ChHHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCCCCCCC
Q 041263 140 LPETWAAMEKLYDSGKARAIGVSNF-STKKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPGS 218 (318)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~l 218 (318)
.+.....++..++.|.--.+=++.. .++.+..+++..+.. .+ .....+..+++.++..++.|+.+. ..|...-.+
T Consensus 172 ~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~--~i-~H~~~l~~~~~~~~~l~~~gi~v~-~~P~sn~~l 247 (325)
T cd01320 172 PEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAE--RI-GHGIRAIEDPELVKRLAERNIPLE-VCPTSNVQT 247 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCc--cc-chhhccCccHHHHHHHHHcCCeEE-ECCCccccc
Confidence 3555677777777776443333322 234555555533321 11 011112224578999999998875 444422110
Q ss_pred CCcccccchHHHHHHHHHhCCCHHHHHHHHHhhcCCeEecCCCCH-----HHHHHhhcccC-CCCCHHHHHHH
Q 041263 219 WVKGEILKEAILQEIAGELNKSPAQVALRWGLQSGHSILPKSVNE-----SRIKENFNLFD-WSIPPKLFSRF 285 (318)
Q Consensus 219 ~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~~vl~g~~~~-----~~l~enl~~~~-~~L~~~~~~~l 285 (318)
+. +.....--++..+..|+.+.+|+.++ +-..+...+.. ..|+.+++..+
T Consensus 248 -~~----------------~~~~~~~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~e~~~~~~~~~l~~~el~~~ 303 (325)
T cd01320 248 -GA----------------VKSLAEHPLRELLDAGVKVTINTDDPTVFGTYLTDEYELLAEAFGLTEEELKKL 303 (325)
T ss_pred -cc----------------cCCcccChHHHHHHCCCEEEECCCCCcccCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 00 00011122445566777777777543 22333333332 47888886654
No 102
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.12 E-value=3e+02 Score=25.90 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=77.7
Q ss_pred CHHHHHHHHHhhhhc-CC-cCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccce-E--eecCCCCCCCCCCCCCC
Q 041263 58 NEKEVGAALKQFFST-GV-VKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDL-Y--LIHWPFRTKPETRGFEP 132 (318)
Q Consensus 58 sE~~lG~al~~~~~~-~~-~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl-~--~lH~p~~~~~~~~~~~~ 132 (318)
+-..+-++|+..-.. |. +....+.|+|-... ..+++ |... | +.+ + -||.++..........+
T Consensus 175 N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~---------~~i~~-L~~~--d-l~v~LaiSLha~d~e~r~~l~pv~ 241 (356)
T PRK14462 175 NLDNVSKAIKIFSENDGLAISPRRQTISTSGLA---------SKIKK-LGEM--N-LGVQLAISLHAVDDELRSELMPIN 241 (356)
T ss_pred CHHHHHHHHHHhcCccCCCcCCCceEEECCCCh---------HHHHH-HHhc--C-CCeEEEEECCCCCHHHHHHhCCCC
Confidence 566677888776221 10 11224577774311 23333 2221 2 112 3 38887665422111101
Q ss_pred CCCCCCCHHHHHHHHHHHH-HcCC---eeEEEeeCC--ChHHHHHHHHhCC-CCCeeEEeeecCCCC------Ch----H
Q 041263 133 DIMLPLCLPETWAAMEKLY-DSGK---ARAIGVSNF--STKKLKDLCSYAK-VKPAVNQVECHPVWQ------QP----A 195 (318)
Q Consensus 133 ~~~~~~~~~~~~~~L~~l~-~~G~---ir~iGvs~~--~~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~~----~ 195 (318)
.. .+++++++++.+.. +.|+ |+++=+.++ +.+++.++.+... .+..++-++||++.. .. .
T Consensus 242 ~~---~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~~~~~~ps~e~i~~ 318 (356)
T PRK14462 242 KA---YNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEGSKFERPSLEDMIK 318 (356)
T ss_pred cc---CCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCCCCCCCCCHHHHHH
Confidence 11 45678888888665 4454 566656544 4777776666543 355788888888653 12 2
Q ss_pred HHHHHHhcCcEEEEecCCCC
Q 041263 196 LHEYCKSSGVHLTAYSPLGS 215 (318)
Q Consensus 196 l~~~~~~~gi~v~a~~pl~~ 215 (318)
..+..+++|+.+......|.
T Consensus 319 f~~~l~~~gi~vtvR~~~G~ 338 (356)
T PRK14462 319 FQDYLNSKGLLCTIRESKGL 338 (356)
T ss_pred HHHHHHHCCCcEEEeCCCCC
Confidence 44557788999988877753
No 103
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=41.08 E-value=99 Score=24.53 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=18.9
Q ss_pred hHHHHHHHhcCcEEEEecCCC
Q 041263 194 PALHEYCKSSGVHLTAYSPLG 214 (318)
Q Consensus 194 ~~l~~~~~~~gi~v~a~~pl~ 214 (318)
.++++.|++.||.|++|-.+.
T Consensus 47 ge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeee
Confidence 589999999999999998774
No 104
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=41.04 E-value=3e+02 Score=25.59 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=26.6
Q ss_pred ccCCCccCccccccccCCcchHHHHHHHHHHcCCCEEeCC
Q 041263 14 LNTGAKIPSVGLGTWKAPPGEVGEAVIAAVKAGYRHIDCA 53 (318)
Q Consensus 14 ~~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DtA 53 (318)
++.|...... +.+.++..++++..-++||..|+.+
T Consensus 11 LRDG~q~~~~-----~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 11 LRDGMHAVRH-----QYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CCCcCcCCCC-----ccCHHHHHHHHHHHHHcCCCEEEee
Confidence 5666554433 4556888999999999999999994
No 105
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=41.03 E-value=86 Score=30.72 Aligned_cols=128 Identities=19% Similarity=0.140 Sum_probs=85.4
Q ss_pred HHHHHHHHcCCCEE--eCCCCC---C-------CHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCC-CCCh--------
Q 041263 37 EAVIAAVKAGYRHI--DCAHVY---D-------NEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDL-APED-------- 95 (318)
Q Consensus 37 ~~l~~Al~~Gi~~~--DtA~~Y---g-------sE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~-~~~~-------- 95 (318)
+-+++.-+.|+..+ =||.+| | .-..+..+-++.|.. .-+-.+||++-++.... .|-.
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~--~L~G~~~lTaGLGGMgGAQPlA~~mag~v~ 184 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGG--SLKGKWVLTAGLGGMGGAQPLAVTMNGGVS 184 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCC--CCceeEEEEeCCCccccccHHHHHHcCceE
Confidence 45566778888765 366554 2 355566777777643 25788999998864211 0000
Q ss_pred --HHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHH
Q 041263 96 --VPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLC 173 (318)
Q Consensus 96 --i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (318)
+.-.-...-+|+.+.|+|.+. .++.++++..++.+++|+..+||+-..-.+.+++++
T Consensus 185 i~vEvd~~ri~kR~~~gyld~~~---------------------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~ 243 (545)
T TIGR01228 185 IAVEVDESRIDKRLETKYCDEQT---------------------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELL 243 (545)
T ss_pred EEEEECHHHHHHHHhcCcceeEc---------------------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHH
Confidence 001112334688889988761 567899999999999999999999998888888888
Q ss_pred HhC-CCCCeeEEeee
Q 041263 174 SYA-KVKPAVNQVEC 187 (318)
Q Consensus 174 ~~~-~~~~~~~q~~~ 187 (318)
+.. .+++...|...
T Consensus 244 ~r~i~pDlvtDQTSa 258 (545)
T TIGR01228 244 KRGVVPDVVTDQTSA 258 (545)
T ss_pred HcCCCCCCcCCCCcc
Confidence 753 23334457665
No 106
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=40.86 E-value=62 Score=28.02 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=48.3
Q ss_pred cCCcchHHHHHHHHHHcCCCEEeCCCCCC-CHHHHH--HHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHH
Q 041263 29 KAPPGEVGEAVIAAVKAGYRHIDCAHVYD-NEKEVG--AALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLE 105 (318)
Q Consensus 29 ~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-sE~~lG--~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~ 105 (318)
..+.++.....+.+.+.|..|+-|+..|+ .-..++ +.+++. -+++ +..|....-.+.+...+-++.--.
T Consensus 128 ~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~------v~~~--v~IKaaGGirt~~~a~~~i~aGa~ 199 (211)
T TIGR00126 128 LLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNT------VGDT--IGVKASGGVRTAEDAIAMIEAGAS 199 (211)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHH------hccC--CeEEEeCCCCCHHHHHHHHHHhhH
Confidence 35667778889999999999999998886 111111 233443 1222 334442222356778888888889
Q ss_pred HhCCCc
Q 041263 106 HLQLDY 111 (318)
Q Consensus 106 ~Lg~d~ 111 (318)
|+|++.
T Consensus 200 riGts~ 205 (211)
T TIGR00126 200 RIGASA 205 (211)
T ss_pred HhCcch
Confidence 999874
No 107
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=40.66 E-value=3.3e+02 Score=25.94 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCC---hHHHHHHHhcCcEEEEecCCCC
Q 041263 141 PETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQ---PALHEYCKSSGVHLTAYSPLGS 215 (318)
Q Consensus 141 ~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~ 215 (318)
..++..++.+.+.+.++.+-+...+.+.++++++. +.+..++..+-||.-+- .++.+.|+++|+.++.=..++.
T Consensus 110 ~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 110 GGSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 34555566655555666666665567777766542 33444555455554332 5788999999999887666543
No 108
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=40.45 E-value=1.9e+02 Score=27.50 Aligned_cols=126 Identities=12% Similarity=0.127 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEeeC-----CC-----hHHHHHHHHhCCCCCeeEEeeecCCC---CChHHHHHHHhc
Q 041263 137 PLCLPETWAAMEKLYDSGKARAIGVSN-----FS-----TKKLKDLCSYAKVKPAVNQVECHPVW---QQPALHEYCKSS 203 (318)
Q Consensus 137 ~~~~~~~~~~L~~l~~~G~ir~iGvs~-----~~-----~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~ 203 (318)
..+.+.+.+.++.|++.| ++.|-+.+ |. ...+.++++.....+....+.++... -..++++.+++.
T Consensus 166 ~r~~e~I~~Ei~~l~~~g-~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~ 244 (414)
T TIGR01579 166 SVPMEAILKQVKILVAKG-YKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIASE 244 (414)
T ss_pred cCCHHHHHHHHHHHHHCC-CceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHHhc
Confidence 467899999999999987 55554431 21 12344444432111111123332222 246888888876
Q ss_pred C-cEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCCHHHHHHHHHhh--cC----CeEecCC--CCHHHHHHhhcc
Q 041263 204 G-VHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQVALRWGLQ--SG----HSILPKS--VNESRIKENFNL 272 (318)
Q Consensus 204 g-i~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~--~~----~~vl~g~--~~~~~l~enl~~ 272 (318)
| +-....-++-+| ..+.++.+.+.+......-+++.+.. .+ ..+++|. .+.+.+++.++.
T Consensus 245 ~~~~~~l~lglESg---------s~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~ 313 (414)
T TIGR01579 245 KRLCPHLHLSLQSG---------SDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRM 313 (414)
T ss_pred CccCCCeEECCCcC---------ChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHH
Confidence 4 222223333222 23344444333332223334444444 23 2355663 666666666543
No 109
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=40.22 E-value=2.3e+02 Score=23.93 Aligned_cols=46 Identities=22% Similarity=0.184 Sum_probs=28.3
Q ss_pred HHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHH
Q 041263 102 RSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKK 168 (318)
Q Consensus 102 ~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~ 168 (318)
+....++ +|.++||..+. .+..+.+.+......++.+|++++....
T Consensus 67 ~ia~~~~---~d~Vqlhg~e~------------------~~~~~~l~~~~~~~~i~~i~~~~~~~~~ 112 (203)
T cd00405 67 EIAEELG---LDVVQLHGDES------------------PEYCAQLRARLGLPVIKAIRVKDEEDLE 112 (203)
T ss_pred HHHHhcC---CCEEEECCCCC------------------HHHHHHHHhhcCCcEEEEEecCChhhHH
Confidence 3344454 88999997431 2233444444445689999999876544
No 110
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=40.19 E-value=2.6e+02 Score=24.52 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=18.7
Q ss_pred CcchHHHHHHHHHHcCCCEEeC
Q 041263 31 PPGEVGEAVIAAVKAGYRHIDC 52 (318)
Q Consensus 31 ~~~~~~~~l~~Al~~Gi~~~Dt 52 (318)
-++.....+++|++.|...|++
T Consensus 20 ~pENT~~Af~~A~~~G~d~vE~ 41 (249)
T PRK09454 20 APENTLAAIDVGARYGHRMIEF 41 (249)
T ss_pred CChHHHHHHHHHHHcCCCEEEE
Confidence 4577889999999999998873
No 111
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=40.18 E-value=2.2e+02 Score=27.70 Aligned_cols=208 Identities=16% Similarity=0.158 Sum_probs=108.5
Q ss_pred HHHHHHHHHhhhhcCCcCCCceEEEeccCCCCC-CC--------ChHHHHHH--HHHHHhCCCccceEeecCCCCCCCCC
Q 041263 59 EKEVGAALKQFFSTGVVKRDEMFITSKIWCCDL-AP--------EDVPKALS--RSLEHLQLDYIDLYLIHWPFRTKPET 127 (318)
Q Consensus 59 E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~-~~--------~~i~~~ve--~SL~~Lg~d~iDl~~lH~p~~~~~~~ 127 (318)
-+.+-++-++.|... -+-++++++-++.... .| -.|.-.++ ..=+||.+.|+|.. .
T Consensus 150 yeT~~~~~r~h~~gd--L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~-------a---- 216 (561)
T COG2987 150 YETFAEAGRQHFGGD--LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI-------A---- 216 (561)
T ss_pred HHHHHHHHHHhcCCC--ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh-------c----
Confidence 344444445555333 6778999888864211 00 00111111 22357888888864 0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeE--EeeecCCCCChHHHHHHHhcCc
Q 041263 128 RGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVN--QVECHPVWQQPALHEYCKSSGV 205 (318)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~--q~~~~~~~~~~~l~~~~~~~gi 205 (318)
.+++++++..++-.++|+-.+||+-..-.+.++++++. ++.|+++ |...+-.
T Consensus 217 ----------~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r-~~~pD~vtDQTsaHdp--------------- 270 (561)
T COG2987 217 ----------ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRR-GIRPDLVTDQTSAHDP--------------- 270 (561)
T ss_pred ----------CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHc-CCCCceecccccccCc---------------
Confidence 56799999999999999999999999888888888875 4455544 5552211
Q ss_pred EEEEecCCCCCCCCCcc--cccchHHHHHHHHHhCCCHHHHHHHHHhhcCCeEecCCCCHHHHHHhhcccCC-CCCHHHH
Q 041263 206 HLTAYSPLGSPGSWVKG--EILKEAILQEIAGELNKSPAQVALRWGLQSGHSILPKSVNESRIKENFNLFDW-SIPPKLF 282 (318)
Q Consensus 206 ~v~a~~pl~~g~l~~~~--~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~~vl~g~~~~~~l~enl~~~~~-~L~~~~~ 282 (318)
+-.|-|.+.-. .... .....+.+.+++... +-..--|+.+.-.+|+.+.=--+|..|+.......+. .++--.-
T Consensus 271 -~~GY~P~G~s~-ee~~~lr~~d~~~~~~~a~~s-m~~hv~Aml~~q~~G~~~fDYGNnirq~a~d~G~~~aF~fPgfVp 347 (561)
T COG2987 271 -LNGYLPVGYTV-EEADELREEDPDKYRKLARAS-MARHVEAMLAFQDRGVPTFDYGNNIRQVAKDEGVENAFDFPGFVP 347 (561)
T ss_pred -ccCcCCCcCCH-HHHHHHHhhCHHHHHHHHHHH-HHHHHHHHHHHHHcCCeeeecchHHHHHHHhccccccccCCcchH
Confidence 11233332110 0000 001122333333221 1112234444445566666666777777666554432 4443333
Q ss_pred HHHHhhhcccccccccc----cccCCCCCcch
Q 041263 283 SRFSNIHQQRLLRGTFA----VHETRSPYKSL 310 (318)
Q Consensus 283 ~~l~~~~~~~~~~~~~~----~~~~~~~~~~~ 310 (318)
+.|+-+.-+ -.|+|- ..+|...|+|-
T Consensus 348 ayIrPLFc~--G~GPFRW~aLSgdpeDi~~tD 377 (561)
T COG2987 348 AYIRPLFCE--GIGPFRWVALSGDPEDIYKTD 377 (561)
T ss_pred Hhhhhhhhc--CcCCeeEEEecCCHHHHHHHH
Confidence 444443321 224443 45566666663
No 112
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=39.91 E-value=2.3e+02 Score=26.53 Aligned_cols=97 Identities=20% Similarity=0.158 Sum_probs=64.2
Q ss_pred EeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEee-------CCChHHHHHHHHhCC-CCCeeEEee
Q 041263 115 YLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVS-------NFSTKKLKDLCSYAK-VKPAVNQVE 186 (318)
Q Consensus 115 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-------~~~~~~l~~~~~~~~-~~~~~~q~~ 186 (318)
+.||.|+.....+...-+.+ .++++.+++.+....... +.|-+- |-+.++..++.+... ++..++-++
T Consensus 216 iSLHa~nd~lR~~L~Pink~---~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP 291 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKK---YPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIP 291 (349)
T ss_pred EecCCCCHHHHhhhhccccC---CCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEee
Confidence 56898876543322222222 667888888888876655 555543 555777777777764 566899999
Q ss_pred ecCCCCC-------hH---HHHHHHhcCcEEEEecCCCC
Q 041263 187 CHPVWQQ-------PA---LHEYCKSSGVHLTAYSPLGS 215 (318)
Q Consensus 187 ~~~~~~~-------~~---l~~~~~~~gi~v~a~~pl~~ 215 (318)
||+.... .. -.+...++||.+.....-+.
T Consensus 292 ~Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 292 YNPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred cCCCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 9998642 22 34456678899988887754
No 113
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=39.75 E-value=1.2e+02 Score=23.57 Aligned_cols=65 Identities=9% Similarity=0.004 Sum_probs=45.1
Q ss_pred CCCceEEEeccCCCCCCCChHHHHHHHHHHHhCC--CccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 041263 76 KRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQL--DYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDS 153 (318)
Q Consensus 76 ~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~--d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 153 (318)
+|=.+.|+-|++..-.....+++.+.++++.... .-.|++++..+.... .+..++.+.|..|.+.
T Consensus 44 ~R~G~~VsKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~-------------~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 44 PRLGLVVGKKTAKRAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDR-------------ATAKQAVAELAQLMAK 110 (120)
T ss_pred ceEEEEEecccCcchhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCccc-------------CCHHHHHHHHHHHHHH
Confidence 5667888888654445678899999999986543 347999999876432 4556666666666543
No 114
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=39.60 E-value=3.1e+02 Score=25.34 Aligned_cols=143 Identities=18% Similarity=0.151 Sum_probs=90.3
Q ss_pred cccccccCCcchHHHHHHHHHHcCCCEEeC----------CCCCC-----CHHHHHHHHHhhhhcCCcCCCceEEEeccC
Q 041263 23 VGLGTWKAPPGEVGEAVIAAVKAGYRHIDC----------AHVYD-----NEKEVGAALKQFFSTGVVKRDEMFITSKIW 87 (318)
Q Consensus 23 lglG~~~~~~~~~~~~l~~Al~~Gi~~~Dt----------A~~Yg-----sE~~lG~al~~~~~~~~~~R~~~~i~tK~~ 87 (318)
+++-.+..+++...+.-+.+-+.|+..||- ...+| +...+.+.++...... + ++-|+.|+-
T Consensus 69 ~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av--~--~iPVTVKiR 144 (323)
T COG0042 69 VAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAV--G--DIPVTVKIR 144 (323)
T ss_pred EEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhh--C--CCCeEEEEe
Confidence 445555567777778888888999999993 34455 4677777776652212 2 577888873
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-eeEEEeeC-CC
Q 041263 88 CCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGK-ARAIGVSN-FS 165 (318)
Q Consensus 88 ~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~-~~ 165 (318)
...-+.+.....+.+.++.-| +|.+.+|.-....... . ..-|+.+.++++.=. |--||=.+ ++
T Consensus 145 lG~d~~~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~----------~--~ad~~~I~~vk~~~~~ipvi~NGdI~s 209 (323)
T COG0042 145 LGWDDDDILALEIARILEDAG---ADALTVHGRTRAQGYL----------G--PADWDYIKELKEAVPSIPVIANGDIKS 209 (323)
T ss_pred cccCcccccHHHHHHHHHhcC---CCEEEEecccHHhcCC----------C--ccCHHHHHHHHHhCCCCeEEeCCCcCC
Confidence 221122234445666666666 7889999765543221 1 145788888888766 66666555 57
Q ss_pred hHHHHHHHHhCCCCCeeEEee
Q 041263 166 TKKLKDLCSYAKVKPAVNQVE 186 (318)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~q~~ 186 (318)
++...+.++..+. +-+++-
T Consensus 210 ~~~a~~~l~~tg~--DgVMig 228 (323)
T COG0042 210 LEDAKEMLEYTGA--DGVMIG 228 (323)
T ss_pred HHHHHHHHHhhCC--CEEEEc
Confidence 8888888887654 444443
No 115
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=39.47 E-value=1.9e+02 Score=25.65 Aligned_cols=79 Identities=22% Similarity=0.247 Sum_probs=53.1
Q ss_pred cchHHHHHHHHHHcCCCEEeCCCCCC--CHHHHHHHHHhhhhcCCcCCCceEEEeccCCCC------CCCChHHHHHHHH
Q 041263 32 PGEVGEAVIAAVKAGYRHIDCAHVYD--NEKEVGAALKQFFSTGVVKRDEMFITSKIWCCD------LAPEDVPKALSRS 103 (318)
Q Consensus 32 ~~~~~~~l~~Al~~Gi~~~DtA~~Yg--sE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~------~~~~~i~~~ve~S 103 (318)
+....+.++.+-+.|++.++.++.+- ++...-++++.. ....+.+.+-++..+ .+++.+.+.++.-
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~d 156 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRD 156 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH------HHCCCEEeecccCCCchhcccCCHHHHHHHHHHH
Confidence 45677888899999999999998876 566667788875 566699999998654 3467777777777
Q ss_pred HHHhCCCccceEeecCC
Q 041263 104 LEHLQLDYIDLYLIHWP 120 (318)
Q Consensus 104 L~~Lg~d~iDl~~lH~p 120 (318)
|+. | .|.+++-.-
T Consensus 157 LeA-G---A~~ViiEar 169 (244)
T PF02679_consen 157 LEA-G---ADKVIIEAR 169 (244)
T ss_dssp HHH-T---ECEEEE--T
T ss_pred HHC-C---CCEEEEeee
Confidence 776 5 566777653
No 116
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=39.46 E-value=1.3e+02 Score=25.87 Aligned_cols=83 Identities=16% Similarity=0.183 Sum_probs=47.2
Q ss_pred HHHhCCCccceEeecC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEee-CCChHHHHHHHHhCCCCCe
Q 041263 104 LEHLQLDYIDLYLIHW-PFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVS-NFSTKKLKDLCSYAKVKPA 181 (318)
Q Consensus 104 L~~Lg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~ 181 (318)
+..+|.|++=+++... |.. .+.+.+-+....+ .+.+..+||. +-+++.+.++++..+ ++
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~---------------V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~~~--~d 79 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRY---------------VSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVETVP--LD 79 (210)
T ss_pred HHHcCCCEEEEccCCCCCCc---------------CCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhcC--CC
Confidence 3468999998874332 211 3333333332222 3568889987 556888888887654 48
Q ss_pred eEEeeecCCCCChHHHHHHHh-cCcEEE
Q 041263 182 VNQVECHPVWQQPALHEYCKS-SGVHLT 208 (318)
Q Consensus 182 ~~q~~~~~~~~~~~l~~~~~~-~gi~v~ 208 (318)
++|+.-+ ...+.++..++ .++.++
T Consensus 80 ~vQLHg~---e~~~~~~~l~~~~~~~ii 104 (210)
T PRK01222 80 LLQLHGD---ETPEFCRQLKRRYGLPVI 104 (210)
T ss_pred EEEECCC---CCHHHHHHHHhhcCCcEE
Confidence 8898632 22344444443 344443
No 117
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=39.21 E-value=16 Score=14.98 Aligned_cols=9 Identities=0% Similarity=-0.068 Sum_probs=6.1
Q ss_pred ccccccCCC
Q 041263 297 TFAVHETRS 305 (318)
Q Consensus 297 ~~~~~~~~~ 305 (318)
|+..|||.+
T Consensus 1 C~i~nCP~G 9 (9)
T PF00220_consen 1 CYIRNCPIG 9 (9)
T ss_pred CccccCCCC
Confidence 466788864
No 118
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=39.16 E-value=2.8e+02 Score=24.76 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCCCEEeCCCCCC-C--H--HHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCC
Q 041263 35 VGEAVIAAVKAGYRHIDCAHVYD-N--E--KEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQL 109 (318)
Q Consensus 35 ~~~~l~~Al~~Gi~~~DtA~~Yg-s--E--~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~ 109 (318)
..+.++..-+.|..+|..++.=| + + ..++..|++. -.+-..--+...+.+...+...+.. +..+|
T Consensus 17 l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~--------~g~~~i~Hlt~r~~n~~~l~~~L~~-~~~~G- 86 (272)
T TIGR00676 17 LWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKE--------TGIPTVPHLTCIGATREEIREILRE-YRELG- 86 (272)
T ss_pred HHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHh--------cCCCeeEEeeecCCCHHHHHHHHHH-HHHCC-
Confidence 33445555578899999987765 2 2 2233344421 1111111111123444455555553 36666
Q ss_pred CccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeeEEEeeCCCh---------HHHHHHHHh--CC
Q 041263 110 DYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDS-GKARAIGVSNFST---------KKLKDLCSY--AK 177 (318)
Q Consensus 110 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvs~~~~---------~~l~~~~~~--~~ 177 (318)
|+-+++=.-|....+. .... .....+.+-++-+++. |. -+||++.++- .++..+.+. ++
T Consensus 87 --i~nvL~l~GD~~~~~~--~~~~----~~f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aG 157 (272)
T TIGR00676 87 --IRHILALRGDPPKGEG--TPTP----GGFNYASELVEFIRNEFGD-FDIGVAAYPEKHPEAPNLEEDIENLKRKVDAG 157 (272)
T ss_pred --CCEEEEeCCCCCCCCC--CCCC----CCCCCHHHHHHHHHHhcCC-eeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4433322212211110 0000 1112244444444543 43 4788887542 233434333 34
Q ss_pred CCCeeEEeeecCCCCC--hHHHHHHHhcCcEE
Q 041263 178 VKPAVNQVECHPVWQQ--PALHEYCKSSGVHL 207 (318)
Q Consensus 178 ~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v 207 (318)
..+.+.|.-|+ .+ .++++.|++.|+.+
T Consensus 158 A~f~iTQ~~fd---~~~~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 158 ADYAITQLFFD---NDDYYRFVDRCRAAGIDV 186 (272)
T ss_pred CCeEeeccccC---HHHHHHHHHHHHHcCCCC
Confidence 44555564432 22 46778899987764
No 119
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=38.69 E-value=1.7e+02 Score=29.17 Aligned_cols=71 Identities=6% Similarity=-0.033 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHc-CCeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecC
Q 041263 139 CLPETWAAMEKLYDS-GKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 139 ~~~~~~~~L~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~p 212 (318)
+-.+++.+|...++. ++|.-||+.+.. ..+..+.+..+. .+.++.+.--..-...+..+++.|+.++.-..
T Consensus 82 s~~Dil~al~~a~~~~~~ia~vg~~~~~-~~~~~~~~ll~~--~i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~ 153 (526)
T TIGR02329 82 TGFDVMQALARARRIASSIGVVTHQDTP-PALRRFQAAFNL--DIVQRSYVTEEDARSCVNDLRARGIGAVVGAG 153 (526)
T ss_pred ChhhHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHHhCC--ceEEEEecCHHHHHHHHHHHHHCCCCEEECCh
Confidence 345688888888774 688888887765 344555555444 44444443333235688889999999887544
No 120
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=38.66 E-value=2.6e+02 Score=24.12 Aligned_cols=96 Identities=14% Similarity=0.201 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHH
Q 041263 94 EDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLC 173 (318)
Q Consensus 94 ~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (318)
...+..+-+.|.++|+++|.+- .|... ....+.++.+.+.... .+-.+++......++..+
T Consensus 13 ~~~k~~i~~~L~~~Gv~~iEvg---~~~~~--------------~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~ 73 (237)
T PF00682_consen 13 TEEKLEIAKALDEAGVDYIEVG---FPFAS--------------EDDFEQVRRLREALPN--ARLQALCRANEEDIERAV 73 (237)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEE---HCTSS--------------HHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEc---ccccC--------------HHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHH
Confidence 3556677778999999999988 22211 2234455566666666 445566666666666644
Q ss_pred H---hCCCCCeeEEeeecCCC--------------CChHHHHHHHhcCcEEE
Q 041263 174 S---YAKVKPAVNQVECHPVW--------------QQPALHEYCKSSGVHLT 208 (318)
Q Consensus 174 ~---~~~~~~~~~q~~~~~~~--------------~~~~l~~~~~~~gi~v~ 208 (318)
+ ..+.+..-+-...|... .-.+.+.+++++|..+.
T Consensus 74 ~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~ 125 (237)
T PF00682_consen 74 EAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA 125 (237)
T ss_dssp HHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred HhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 4 34443333333333311 11467889999999983
No 121
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=38.43 E-value=15 Score=19.12 Aligned_cols=14 Identities=50% Similarity=1.163 Sum_probs=11.2
Q ss_pred CCCCcchhhcccCC
Q 041263 304 RSPYKSLEELWDGE 317 (318)
Q Consensus 304 ~~~~~~~~~~~~~~ 317 (318)
+-||+.++.+|.|.
T Consensus 6 ~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 6 NMPYSKLEKLWEGV 19 (20)
T ss_pred ECCCCChHHhcCcc
Confidence 35788999999874
No 122
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=38.27 E-value=1e+02 Score=28.84 Aligned_cols=65 Identities=9% Similarity=0.021 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCee-EEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCC---ChHHHHHHHhcCcEEEEe
Q 041263 144 WAAMEKLYDSGKAR-AIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQ---QPALHEYCKSSGVHLTAY 210 (318)
Q Consensus 144 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~---~~~l~~~~~~~gi~v~a~ 210 (318)
++.+.+|++...+. ..|=|-++..++..+++... .+++|......-- -..+...|+.+|+.+...
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~--~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~ 295 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASA--ADVFALKTTKSGGLLESKKIAAIAEAAGIALYGG 295 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCC--CCEEEEcccccCCHHHHHHHHHHHHHcCCceeee
Confidence 34445555544333 44444555555555544432 2444444333211 134555566666665444
No 123
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=38.08 E-value=70 Score=29.94 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=7.2
Q ss_pred HHHHHHHhcCcEEEE
Q 041263 195 ALHEYCKSSGVHLTA 209 (318)
Q Consensus 195 ~l~~~~~~~gi~v~a 209 (318)
.+..+|+++|+.++.
T Consensus 281 ~~~~~a~~~gi~~~~ 295 (365)
T cd03318 281 KVAAIAEAAGIALYG 295 (365)
T ss_pred HHHHHHHHcCCceee
Confidence 344445555555443
No 124
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=37.73 E-value=2.7e+02 Score=26.16 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=56.8
Q ss_pred EeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-cCC---eeEEEeeC--CChHHHHHHHHhCC-CCCeeEEeee
Q 041263 115 YLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYD-SGK---ARAIGVSN--FSTKKLKDLCSYAK-VKPAVNQVEC 187 (318)
Q Consensus 115 ~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-~G~---ir~iGvs~--~~~~~l~~~~~~~~-~~~~~~q~~~ 187 (318)
+-||.++..........+.. .++.++++++.+..+ .|. |+++=+.+ .+.+++.++.+... .++.++-++|
T Consensus 219 iSL~a~~~e~r~~l~p~~~~---~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPy 295 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKK---YNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPW 295 (355)
T ss_pred EEeCCCCHHHHHHhcCcccC---CCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEec
Confidence 66898764432110000000 347888888887654 342 34443433 34567666655542 4557777888
Q ss_pred cCCCCC----------hHHHHHHHhcCcEEEEecCCCC
Q 041263 188 HPVWQQ----------PALHEYCKSSGVHLTAYSPLGS 215 (318)
Q Consensus 188 ~~~~~~----------~~l~~~~~~~gi~v~a~~pl~~ 215 (318)
|++... ....++.+++|+.+......|.
T Consensus 296 np~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 296 NPFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 886531 1345567788999999887754
No 125
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=37.57 E-value=48 Score=29.24 Aligned_cols=73 Identities=22% Similarity=0.333 Sum_probs=44.4
Q ss_pred ccCCCccCcccccccc----CC-----cchHHHH----HHHHHHcCCCEEeCCCC---CC--CHHHHHHHHHhhhhc-CC
Q 041263 14 LNTGAKIPSVGLGTWK----AP-----PGEVGEA----VIAAVKAGYRHIDCAHV---YD--NEKEVGAALKQFFST-GV 74 (318)
Q Consensus 14 ~~tg~~vs~lglG~~~----~~-----~~~~~~~----l~~Al~~Gi~~~DtA~~---Yg--sE~~lG~al~~~~~~-~~ 74 (318)
-.+|+.+|.++|.+.+ .+ ++++.++ +..|.+.||+.|-.|.. |- ++....+++.++-.. ..
T Consensus 64 ~etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 64 QETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HHhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999976 11 2344444 45566789999988852 32 555555555443100 00
Q ss_pred cCCCceEEEecc
Q 041263 75 VKRDEMFITSKI 86 (318)
Q Consensus 75 ~~R~~~~i~tK~ 86 (318)
-.+.+|.++.-+
T Consensus 144 A~~aqV~lAvEi 155 (287)
T COG3623 144 AARAQVMLAVEI 155 (287)
T ss_pred HHhhccEEEeee
Confidence 146667776665
No 126
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=37.18 E-value=1.3e+02 Score=22.99 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=46.8
Q ss_pred CCCceEEEeccCCCCCCCChHHHHHHHHHHHhCC---CccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 041263 76 KRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQL---DYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYD 152 (318)
Q Consensus 76 ~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~---d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 152 (318)
+|=.+.|+-|++. -.....+++.+.+.++.... ...|++++-.+.... .+..+.-+.|..|.+
T Consensus 38 ~R~GisVsKKvgk-AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~-------------~~~~~l~~~l~~ll~ 103 (114)
T PRK00499 38 FRVGISVSKKVGN-AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAE-------------LDYKEIKKSLIHVLK 103 (114)
T ss_pred cEEEEEEecccCc-hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCccc-------------CCHHHHHHHHHHHHH
Confidence 5777888888865 55678899999999987643 357999998876542 556677777777665
Q ss_pred c
Q 041263 153 S 153 (318)
Q Consensus 153 ~ 153 (318)
.
T Consensus 104 k 104 (114)
T PRK00499 104 L 104 (114)
T ss_pred H
Confidence 4
No 127
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=37.11 E-value=1.5e+02 Score=25.48 Aligned_cols=90 Identities=9% Similarity=0.056 Sum_probs=56.0
Q ss_pred HHhCCCccceEeec-CCCCCCCCCCCCCCCCCCCCCHH----HHHHHHHHHHH--cCCeeEEEeeCCChHHHHHHHHhCC
Q 041263 105 EHLQLDYIDLYLIH-WPFRTKPETRGFEPDIMLPLCLP----ETWAAMEKLYD--SGKARAIGVSNFSTKKLKDLCSYAK 177 (318)
Q Consensus 105 ~~Lg~d~iDl~~lH-~p~~~~~~~~~~~~~~~~~~~~~----~~~~~L~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~ 177 (318)
..-|.++||+=.-- +|.... .+.+ .+...++.+++ .+. -|.+-++.++.++++++. +
T Consensus 29 ~~~GAdiIDIg~~st~p~~~~-------------v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g 92 (210)
T PF00809_consen 29 VEAGADIIDIGAESTRPGATP-------------VSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-G 92 (210)
T ss_dssp HHTT-SEEEEESSTSSTTSSS-------------SHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-T
T ss_pred HHhcCCEEEecccccCCCCCc-------------CCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-C
Confidence 35688999986322 222110 2223 34455555554 233 588899999999999998 5
Q ss_pred CCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCC
Q 041263 178 VKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 178 ~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 213 (318)
.++..+.. -+...+++++.++++|..++++---
T Consensus 93 ~~~ind~~---~~~~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 93 ADIINDIS---GFEDDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp SSEEEETT---TTSSSTTHHHHHHHHTSEEEEESES
T ss_pred cceEEecc---cccccchhhhhhhcCCCEEEEEecc
Confidence 54322222 2222678999999999999998544
No 128
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=37.11 E-value=63 Score=29.55 Aligned_cols=138 Identities=20% Similarity=0.184 Sum_probs=79.4
Q ss_pred ChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHH
Q 041263 94 EDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLC 173 (318)
Q Consensus 94 ~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (318)
+.+++.+.+-+++.|+|++=++.+-.-....+.. .....++++|++..+++.- ..++..+....
T Consensus 132 e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~----------~~~~~t~~~l~~al~~~~~------~~~aS~~YA~A 195 (295)
T PF07994_consen 132 EQIREDIRDFKKENGLDRVVVVNVASTERYIPVI----------PGVHDTLEALEKALDENDP------EISASMLYAYA 195 (295)
T ss_dssp HHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---C----------CCCCSSHHHHHHHHHTT-T------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCC----------ccccCCHHHHHHHhhcCCC------cCChHHHHHHH
Confidence 5688899999999998876666555433321110 1122467888888877652 22344443332
Q ss_pred HhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEec---CCCCCCCCCcccccchHHHHHHHHHhCCCHHHHHHHHHh
Q 041263 174 SYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYS---PLGSPGSWVKGEILKEAILQEIAGELNKSPAQVALRWGL 250 (318)
Q Consensus 174 ~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~---pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l 250 (318)
.. ...+.++-+.-++....+.+.+.++++|+.+..-- |++.+ -++.--.+.++|.+.|+...+-.++|-.
T Consensus 196 Al-~~g~~fvN~tP~~~a~~P~l~ela~~~gvpi~GdD~KT~lAAp------lvlDLirl~~la~r~g~~Gv~~~ls~ff 268 (295)
T PF07994_consen 196 AL-EAGVPFVNGTPSNIADDPALVELAEEKGVPIAGDDGKTPLAAP------LVLDLIRLAKLALRRGMGGVQEWLSFFF 268 (295)
T ss_dssp HH-HTTEEEEE-SSSTTTTSHHHHHHHHHHTEEEEESSBS-HHHHH------HHHHHHHHHHHHHHTTS-EEHHHHHHHB
T ss_pred HH-HCCCCeEeccCccccCCHHHHHHHHHcCCCeecchHhhhhhhH------HHHHHHHHHHHHHHcCCCChhHHHHHHh
Confidence 22 12224444333444445789999999999987641 22111 2334456888999999888888888887
Q ss_pred hcCC
Q 041263 251 QSGH 254 (318)
Q Consensus 251 ~~~~ 254 (318)
..|.
T Consensus 269 K~P~ 272 (295)
T PF07994_consen 269 KSPM 272 (295)
T ss_dssp SS-T
T ss_pred cCCC
Confidence 7774
No 129
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=37.06 E-value=3.5e+02 Score=25.19 Aligned_cols=92 Identities=16% Similarity=0.087 Sum_probs=46.9
Q ss_pred CCceEEEeccCCCCCCC--ChHH--HHHHHHHHHhCCCccceE-eecC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 041263 77 RDEMFITSKIWCCDLAP--EDVP--KALSRSLEHLQLDYIDLY-LIHW-PFRTKPETRGFEPDIMLPLCLPETWAAMEKL 150 (318)
Q Consensus 77 R~~~~i~tK~~~~~~~~--~~i~--~~ve~SL~~Lg~d~iDl~-~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 150 (318)
..++.|..|+...+... .... ..+-+-|+..|+|++++- ..|. +....... .....-.....++
T Consensus 202 G~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~----------~~~~~~~~~~~~i 271 (353)
T cd02930 202 GEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATS----------VPRGAFAWATAKL 271 (353)
T ss_pred CCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccc----------CCchhhHHHHHHH
Confidence 45778888886544221 1222 234455777888877762 2232 11110000 1111122345566
Q ss_pred HHcCCeeEEEeeCC-ChHHHHHHHHhCCC
Q 041263 151 YDSGKARAIGVSNF-STKKLKDLCSYAKV 178 (318)
Q Consensus 151 ~~~G~ir~iGvs~~-~~~~l~~~~~~~~~ 178 (318)
++.=.+-=++.... +++.++++++....
T Consensus 272 k~~v~iPVi~~G~i~~~~~a~~~i~~g~~ 300 (353)
T cd02930 272 KRAVDIPVIASNRINTPEVAERLLADGDA 300 (353)
T ss_pred HHhCCCCEEEcCCCCCHHHHHHHHHCCCC
Confidence 66656666666554 57778888776543
No 130
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=37.04 E-value=3.1e+02 Score=24.50 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-eeEEEeeCCChHHHHHHH
Q 041263 95 DVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGK-ARAIGVSNFSTKKLKDLC 173 (318)
Q Consensus 95 ~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~ 173 (318)
.-+..+-+.|.++|++.|.+-. |... .+.+++.+.+.+.++ .+-.++.....+.++.+.
T Consensus 22 ~~k~~i~~~L~~~Gv~~IEvG~---P~~~-----------------~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~ 81 (262)
T cd07948 22 EDKIEIAKALDAFGVDYIELTS---PAAS-----------------PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAV 81 (262)
T ss_pred HHHHHHHHHHHHcCCCEEEEEC---CCCC-----------------HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHH
Confidence 4555667779999998888873 4321 233455555554443 333555666777888887
Q ss_pred HhCCCCCeeEEeeecC------CCCC--------hHHHHHHHhcCcEEEEec
Q 041263 174 SYAKVKPAVNQVECHP------VWQQ--------PALHEYCKSSGVHLTAYS 211 (318)
Q Consensus 174 ~~~~~~~~~~q~~~~~------~~~~--------~~l~~~~~~~gi~v~a~~ 211 (318)
+. +++..-+-+..|. +... .+++++++++|+.|....
T Consensus 82 ~~-g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 82 ET-GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred Hc-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 64 4432222222222 1111 346788999998866654
No 131
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=37.02 E-value=88 Score=25.66 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHcCCCEEeCCCCCC-CHHHHHHHHHhhhhcCCcCCCceEEEecc-CCCCCCCChHHHHHHHHHHHhCCC
Q 041263 34 EVGEAVIAAVKAGYRHIDCAHVYD-NEKEVGAALKQFFSTGVVKRDEMFITSKI-WCCDLAPEDVPKALSRSLEHLQLD 110 (318)
Q Consensus 34 ~~~~~l~~Al~~Gi~~~DtA~~Yg-sE~~lG~al~~~~~~~~~~R~~~~i~tK~-~~~~~~~~~i~~~ve~SL~~Lg~d 110 (318)
...-.+++|-+.||.+|=.|+.|| +-.-+-+.+.. -=+++++|-- +...-+...+...+++-|+..|.+
T Consensus 15 tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg--------~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~ 85 (186)
T COG1751 15 TLEIAVERAKELGIKHIVVASSTGYTALKALEMVEG--------DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAK 85 (186)
T ss_pred HHHHHHHHHHhcCcceEEEEecccHHHHHHHHhccc--------CceEEEEEeecccccCCceecCHHHHHHHHHcCce
Confidence 345567888899999999999998 33333233221 1235555543 333334556888899999999964
No 132
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=36.94 E-value=92 Score=29.73 Aligned_cols=68 Identities=12% Similarity=0.011 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCee-EEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCC---CChHHHHHHHhcCcEEEEecCC
Q 041263 144 WAAMEKLYDSGKAR-AIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVW---QQPALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 144 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~v~a~~pl 213 (318)
++.+.+|++.-.+. ..|=|.++...+..+++... ++++|....-.- +-..+.+.|+.+|+.+..++..
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a--~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQL--IDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCC--CCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 57788888876665 66677788889988887644 377776654432 2257888999999999887554
No 133
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=36.64 E-value=1.3e+02 Score=23.35 Aligned_cols=62 Identities=6% Similarity=0.040 Sum_probs=45.1
Q ss_pred CCceEEEeccCCCCCCCChHHHHHHHHHHHhCCC------ccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 041263 77 RDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLD------YIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKL 150 (318)
Q Consensus 77 R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d------~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 150 (318)
|=.+.|+-|++........+++.+.++++....+ -.|++++-.+...+ .+..+..+.|+.|
T Consensus 47 RlG~sVSKKv~~kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~-------------~~~~~l~~~l~~l 113 (118)
T PRK01492 47 FLGIKVSRKLNKKAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEE-------------INFSHLNYELSKI 113 (118)
T ss_pred eEEEEEecccCCchhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCccc-------------CCHHHHHHHHHHH
Confidence 6788999997654556789999999999987642 47899998876432 4455666666655
Q ss_pred H
Q 041263 151 Y 151 (318)
Q Consensus 151 ~ 151 (318)
.
T Consensus 114 ~ 114 (118)
T PRK01492 114 I 114 (118)
T ss_pred H
Confidence 3
No 134
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=36.59 E-value=3.1e+02 Score=27.13 Aligned_cols=108 Identities=10% Similarity=0.095 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCC
Q 041263 56 YDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIM 135 (318)
Q Consensus 56 YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 135 (318)
+|++..|-++|++..... +.+-++|.|-+- ++-|-..++...++++.+.++++.++.|.......
T Consensus 67 ~G~~~~L~~aI~~~~~~~--~P~~I~V~sTC~-----selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~-------- 131 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDDRF--KPDLIVVTPSCT-----SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKEN-------- 131 (511)
T ss_pred cchHHHHHHHHHHHHHhc--CCCEEEEeCCCh-----HHHhccCHHHHHHHhccCCCcEEEecCCCcccchh--------
Confidence 677888888888763322 333455555441 23333344444555555468899999887543211
Q ss_pred CCCCHHHHHHHHHH-H----------HHcCCeeEEEeeCC------ChHHHHHHHHhCCCCC
Q 041263 136 LPLCLPETWAAMEK-L----------YDSGKARAIGVSNF------STKKLKDLCSYAKVKP 180 (318)
Q Consensus 136 ~~~~~~~~~~~L~~-l----------~~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~ 180 (318)
.-...+++++-+ + .+.++|--||.++. +...+..+++..++.+
T Consensus 132 --~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~v 191 (511)
T TIGR01278 132 --QAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEV 191 (511)
T ss_pred --HHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 111223322221 1 13456888898763 3566777787776533
No 135
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.38 E-value=2.5e+02 Score=26.35 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHc-CC---eeEEEee--CCChHHHHHHHHhC-CCCCeeEEeeecCCCCC----------hHHHHHH
Q 041263 138 LCLPETWAAMEKLYDS-GK---ARAIGVS--NFSTKKLKDLCSYA-KVKPAVNQVECHPVWQQ----------PALHEYC 200 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~-G~---ir~iGvs--~~~~~~l~~~~~~~-~~~~~~~q~~~~~~~~~----------~~l~~~~ 200 (318)
.++.+..+++.++.+. |+ +-++=+. |.+++++.++.+.. +.+..++-++||+.... ....+..
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L 302 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYL 302 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHH
Confidence 5678888888887654 32 1222222 55678877777655 35667888888885431 2456668
Q ss_pred HhcCcEEEEecCCCC
Q 041263 201 KSSGVHLTAYSPLGS 215 (318)
Q Consensus 201 ~~~gi~v~a~~pl~~ 215 (318)
+++|+.+......|.
T Consensus 303 ~~~gi~~tiR~~~G~ 317 (344)
T PRK14464 303 HRRGVLTKVRNSAGQ 317 (344)
T ss_pred HHCCceEEEECCCCC
Confidence 889999999988754
No 136
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=36.34 E-value=1.6e+02 Score=24.36 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=40.4
Q ss_pred hHHHHHHHH-HHcCCCEEeCCCCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHH
Q 041263 34 EVGEAVIAA-VKAGYRHIDCAHVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSL 104 (318)
Q Consensus 34 ~~~~~l~~A-l~~Gi~~~DtA~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL 104 (318)
.....|... .+.|++.....-.-.++..|-++|+.. ..+.+++|+|- +......+.+.+++.+.+
T Consensus 19 ~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~-----~~~~dlVIttG-G~G~t~~D~t~ea~~~~~ 84 (170)
T cd00885 19 TNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRA-----SERADLVITTG-GLGPTHDDLTREAVAKAF 84 (170)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH-----HhCCCEEEECC-CCCCCCCChHHHHHHHHh
Confidence 334455544 478998766443334677788888876 35789999993 333333456666666554
No 137
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=35.91 E-value=2.7e+02 Score=24.24 Aligned_cols=110 Identities=8% Similarity=0.070 Sum_probs=63.1
Q ss_pred HHHHHHHHhCCCCCeeEEeeecCCCCC-hHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCC------
Q 041263 167 KKLKDLCSYAKVKPAVNQVECHPVWQQ-PALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNK------ 239 (318)
Q Consensus 167 ~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~------ 239 (318)
..+....+..+++....+..-. .... .++...+++.|+..++++.+.. -.....+..+|++.|+
T Consensus 48 ~~~~~qA~algiPl~~~~~~~~-~e~~~~~l~~~l~~~gv~~vv~GdI~s--------~~qr~~~e~vc~~~gl~~~~PL 118 (222)
T TIGR00289 48 HLTDLVAEAVGIPLIKLYTSGE-EEKEVEDLAGQLGELDVEALCIGAIES--------NYQKSRIDKVCRELGLKSIAPL 118 (222)
T ss_pred HHHHHHHHHcCCCeEEEEcCCc-hhHHHHHHHHHHHHcCCCEEEECcccc--------HHHHHHHHHHHHHcCCEEeccc
Confidence 3444444555665544443211 0111 4566777777888777765532 1234567888888764
Q ss_pred ---CHHHHHHHHHhhcCC-eEecCCCCHHHHHHhhcccCCCCCHHHHHHHHhhhc
Q 041263 240 ---SPAQVALRWGLQSGH-SILPKSVNESRIKENFNLFDWSIPPKLFSRFSNIHQ 290 (318)
Q Consensus 240 ---s~~q~al~~~l~~~~-~vl~g~~~~~~l~enl~~~~~~L~~~~~~~l~~~~~ 290 (318)
++.++ +.+ +..|+ ++|+.++. ..+.+. -++..|+.+.+++|.++.+
T Consensus 119 W~~d~~~l-~e~-i~~Gf~aiIv~v~~-~gL~~~--~LGr~id~~~~~~L~~l~~ 168 (222)
T TIGR00289 119 WHADPEKL-MYE-VAEKFEVIIVSVSA-MGLDES--WLGRRIDKECIDDLKRLNE 168 (222)
T ss_pred cCCCHHHH-HHH-HHcCCeEEEEEEcc-CCCChH--HcCCccCHHHHHHHHHHHh
Confidence 56665 465 47774 55554443 234322 3556899999999888766
No 138
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=35.55 E-value=2.3e+02 Score=27.12 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCC---hHHHHHHHhcCcEEEEecCCCCCC
Q 041263 141 PETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQ---PALHEYCKSSGVHLTAYSPLGSPG 217 (318)
Q Consensus 141 ~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~~g~ 217 (318)
..+..-++.+.++.-|....+..-+...+.+.+...+.+..++..+-||...- ..+.+.|+++|+-++.=++|+.+.
T Consensus 113 G~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~ 192 (396)
T COG0626 113 GGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPV 192 (396)
T ss_pred chHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccccc
Confidence 56788889988888877777776666555555443345667888888887764 568889999998899888887654
Q ss_pred CC
Q 041263 218 SW 219 (318)
Q Consensus 218 l~ 219 (318)
+.
T Consensus 193 ~q 194 (396)
T COG0626 193 LQ 194 (396)
T ss_pred cc
Confidence 43
No 139
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=35.30 E-value=2.9e+02 Score=23.81 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=50.4
Q ss_pred HHhCCCccceEeec-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-eeEEEee-CCChHHHHHHHHhCCCCCe
Q 041263 105 EHLQLDYIDLYLIH-WPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGK-ARAIGVS-NFSTKKLKDLCSYAKVKPA 181 (318)
Q Consensus 105 ~~Lg~d~iDl~~lH-~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs-~~~~~~l~~~~~~~~~~~~ 181 (318)
..+|.||+=+++.- .|.. .+. +...++.+.-. +..+||. |.+.+.+.++++.. .++
T Consensus 19 ~~~gad~iG~If~~~SpR~---------------Vs~----~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~--~ld 77 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRY---------------VSP----EQAREIASAVPKVKVVGVFVNESIEEILEIAEEL--GLD 77 (208)
T ss_pred HHcCCCEEEEEEcCCCCCc---------------CCH----HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhc--CCC
Confidence 46889998887654 3332 333 34444444444 7899987 45577788887764 558
Q ss_pred eEEeeecCCCCChHHHHHHHhcC-cEEEE
Q 041263 182 VNQVECHPVWQQPALHEYCKSSG-VHLTA 209 (318)
Q Consensus 182 ~~q~~~~~~~~~~~l~~~~~~~g-i~v~a 209 (318)
.+|+.-. ...+.++..++.. +.|+-
T Consensus 78 ~VQlHG~---e~~~~~~~l~~~~~~~v~k 103 (208)
T COG0135 78 AVQLHGD---EDPEYIDQLKEELGVPVIK 103 (208)
T ss_pred EEEECCC---CCHHHHHHHHhhcCCceEE
Confidence 9997732 3356666666553 55443
No 140
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=35.17 E-value=2.8e+02 Score=26.42 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=52.9
Q ss_pred ccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCC-CCCeeEEeeecC
Q 041263 111 YIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAK-VKPAVNQVECHP 189 (318)
Q Consensus 111 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~~~q~~~~~ 189 (318)
.+|++.||.-.. .+.++..++.++..+.-.+ -+=+.+.+++.+.++++.+. .+|.+.-..
T Consensus 69 ~~D~Ialr~~S~---------------DPae~fa~~vk~V~~a~~~-PLIL~~~D~evl~aale~~~~~kpLL~aAt--- 129 (386)
T PF03599_consen 69 GADMIALRLESG---------------DPAEEFAKAVKKVAEAVDV-PLILCGCDPEVLKAALEACAGKKPLLYAAT--- 129 (386)
T ss_dssp E-SEEEEE-GGG---------------STHHHHHHHHHHHHHC-SS-EEEEESSHHHHHHHHHHHTTTS--EEEEEB---
T ss_pred cccEEEEEecCC---------------ChHHHHHHHHHHHHHhcCC-CEEEEeCCHHHHHHHHHHhCcCCcEEeEcC---
Confidence 688899987432 1136666777777665443 44555559999999999875 444443322
Q ss_pred CCCC-hHHHHHHHhcCcEEEEecCC
Q 041263 190 VWQQ-PALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 190 ~~~~-~~l~~~~~~~gi~v~a~~pl 213 (318)
..+ +++.+.|+++|..+++.+|.
T Consensus 130 -~eNyk~m~~lA~~y~~pl~v~sp~ 153 (386)
T PF03599_consen 130 -EENYKAMAALAKEYGHPLIVSSPI 153 (386)
T ss_dssp -TTTHHHHHHHHHHCT-EEEEE-SS
T ss_pred -HHHHHHHHHHHHHcCCeEEEEecc
Confidence 223 68999999999999999988
No 141
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=35.09 E-value=2e+02 Score=27.33 Aligned_cols=68 Identities=10% Similarity=0.038 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCee-EEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCC---CChHHHHHHHhcCcEEEEecCC
Q 041263 144 WAAMEKLYDSGKAR-AIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVW---QQPALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 144 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~v~a~~pl 213 (318)
++.|.+|++...+- ..|-|.++..++..+++... .+++|......- .-.++...|+++|+.+..++..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~a--vdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNA--VDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCC--CcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 57778888776655 55666677778888777644 467776654332 2257888899999999887754
No 142
>PRK13561 putative diguanylate cyclase; Provisional
Probab=34.99 E-value=2.3e+02 Score=28.67 Aligned_cols=117 Identities=11% Similarity=0.116 Sum_probs=74.9
Q ss_pred eEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEE
Q 041263 80 MFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAI 159 (318)
Q Consensus 80 ~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~i 159 (318)
+.|+--+.........+...+.+.|++.+.+ ...+.+--++... ..+...+.+.+.+|++.|- .|
T Consensus 486 ~~~~iNlS~~~l~~~~f~~~l~~~l~~~~~~-~~~l~lEi~E~~~------------~~~~~~~~~~~~~l~~~G~--~i 550 (651)
T PRK13561 486 LPLSVNLSALQLMHPNMVADMLELLTRYRIQ-PGTLILEVTESRR------------IDDPHAAVAILRPLRNAGV--RV 550 (651)
T ss_pred ceEEEECCHHHHCCchHHHHHHHHHHHcCCC-hHHEEEEEchhhh------------hcCHHHHHHHHHHHHHCCC--EE
Confidence 4455555444455567888999999998865 3444444333221 0445778899999999998 78
Q ss_pred EeeCCCh--HHHHHHHHhCCCCCeeEEeeecCCC---CC----hHHHHHHHhcCcEEEEec
Q 041263 160 GVSNFST--KKLKDLCSYAKVKPAVNQVECHPVW---QQ----PALHEYCKSSGVHLTAYS 211 (318)
Q Consensus 160 Gvs~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~---~~----~~l~~~~~~~gi~v~a~~ 211 (318)
++.+|.. ..+..+......+++.+-+.-++.. .+ ..++..|+..|+.++|-.
T Consensus 551 ~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAeg 611 (651)
T PRK13561 551 ALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAEG 611 (651)
T ss_pred EEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEec
Confidence 8888763 3444444333345566555433322 12 457889999999999874
No 143
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=34.93 E-value=96 Score=28.56 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCee-EEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCC---CChHHHHHHHhcCcEEEEecCCC
Q 041263 142 ETWAAMEKLYDSGKAR-AIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVW---QQPALHEYCKSSGVHLTAYSPLG 214 (318)
Q Consensus 142 ~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~v~a~~pl~ 214 (318)
+-++.+.+|++...+. ..|=|.++...+..+++...+ +++|......- .-..+...|+++|+.++..+.+.
T Consensus 210 ~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~--dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~e 284 (324)
T TIGR01928 210 DDLSMLDELAKGTITPICLDESITSLDDARNLIELGNV--KVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLE 284 (324)
T ss_pred hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCC--CEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEc
Confidence 3457788888776554 567778888888888776443 77777654432 22578899999999999876553
No 144
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=34.76 E-value=3.5e+02 Score=24.54 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=60.0
Q ss_pred HHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHH-----HHHHHHHHHcCCeeEEEeeCCChHH----HHHHHH
Q 041263 104 LEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPET-----WAAMEKLYDSGKARAIGVSNFSTKK----LKDLCS 174 (318)
Q Consensus 104 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~-----~~~L~~l~~~G~ir~iGvs~~~~~~----l~~~~~ 174 (318)
++-++-.++|+..+..+... ....+. -+.+.++.++--=|++|+.+.++.. .+++.+
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~--------------~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er 120 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEV--------------AIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELER 120 (293)
T ss_pred HhhhcccccceEEeeccccc--------------cchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHH
Confidence 77788888999888841110 111112 3578888888888999999988652 122222
Q ss_pred hCCCCCeeEEeeecCCCCC--------hHHHHHHHhcCcEEEEecCC
Q 041263 175 YAKVKPAVNQVECHPVWQQ--------PALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 175 ~~~~~~~~~q~~~~~~~~~--------~~l~~~~~~~gi~v~a~~pl 213 (318)
... ..-+.++.+++..+. ..+.+.|+++|+.|+.+...
T Consensus 121 ~v~-~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 121 RVR-ELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred HHH-hcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCC
Confidence 211 133455555454432 45899999999999997655
No 145
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=34.59 E-value=3.2e+02 Score=24.00 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=11.6
Q ss_pred HHHHHHhCCCccceE
Q 041263 101 SRSLEHLQLDYIDLY 115 (318)
Q Consensus 101 e~SL~~Lg~d~iDl~ 115 (318)
-..++++|.++|++.
T Consensus 19 l~~~~~~G~~~vEl~ 33 (275)
T PRK09856 19 FRDASELGYDGIEIW 33 (275)
T ss_pred HHHHHHcCCCEEEEc
Confidence 345678999999985
No 146
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.58 E-value=2.2e+02 Score=27.63 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHcCC---------eeEEEeeCCC-hHHHHHHHHhCCCCCeeEEeeecCCCCC---hHHHHHHHhc
Q 041263 137 PLCLPETWAAMEKLYDSGK---------ARAIGVSNFS-TKKLKDLCSYAKVKPAVNQVECHPVWQQ---PALHEYCKSS 203 (318)
Q Consensus 137 ~~~~~~~~~~L~~l~~~G~---------ir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~ 203 (318)
..+++++++..++|+++|. +.++|..... ...+.++++...--+....++++..++. +++++..++.
T Consensus 172 Sr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~ 251 (437)
T COG0621 172 SRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAET 251 (437)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcC
Confidence 3778999999999999997 3345554321 1223333333221122455666555554 7899998885
Q ss_pred -CcEEEEecCCCCC
Q 041263 204 -GVHLTAYSPLGSP 216 (318)
Q Consensus 204 -gi~v~a~~pl~~g 216 (318)
.+--.-+-|+-+|
T Consensus 252 ~kv~~~lHlPvQsG 265 (437)
T COG0621 252 PKVCPHLHLPVQSG 265 (437)
T ss_pred CcccccccCccccC
Confidence 6666667777666
No 147
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=34.48 E-value=1.7e+02 Score=23.70 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=46.4
Q ss_pred CCCceEEEeccCCCCCCCChHHHHHHHHHHHhC--CCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 041263 76 KRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQ--LDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDS 153 (318)
Q Consensus 76 ~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 153 (318)
+|=.|.|+-|++..-.....+++.+.++++.+. +...|++++-.+.... .+..++.+.|..|.+.
T Consensus 48 ~RlG~sVSKKvg~~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~-------------~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 48 PRLGLAVSRKVDTRAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAK-------------ASNPQLRDAFLRLLRR 114 (145)
T ss_pred cEEEEEEeccccCcchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCccc-------------CCHHHHHHHHHHHHHH
Confidence 577788888886545567889999999998653 2344888887765432 5667777888887765
No 148
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=34.46 E-value=2.9e+02 Score=23.40 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=17.8
Q ss_pred CCcchHHHHHHHHHHcCCCEEeC
Q 041263 30 APPGEVGEAVIAAVKAGYRHIDC 52 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~Dt 52 (318)
.+.+++.++++.+++.|+...|.
T Consensus 8 ~D~~~~~~~v~~~l~~g~~~~~i 30 (201)
T cd02070 8 GDEEETVELVKKALEAGIDPQDI 30 (201)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 46677889999999999765543
No 149
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=34.31 E-value=2.5e+02 Score=26.01 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEeeC-----CChHHHHHHHHhCCC-CCeeEEeee----------cCCCCChHHHHHHH
Q 041263 138 LCLPETWAAMEKLYDSGKARAIGVSN-----FSTKKLKDLCSYAKV-KPAVNQVEC----------HPVWQQPALHEYCK 201 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iGvs~-----~~~~~l~~~~~~~~~-~~~~~q~~~----------~~~~~~~~l~~~~~ 201 (318)
.+.+++.+.++.+++.| ++.|.+.+ ...+.+.++++.... .+.+.-.-+ +.-....+.++..+
T Consensus 70 ls~eeI~e~~~~~~~~G-~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAG-ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 67789999999999987 66677652 234444444333221 111110001 11222367888899
Q ss_pred hcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCCHH--HHHHHHHhhcC----CeEecC-CCCHHHHHHhhc
Q 041263 202 SSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSPA--QVALRWGLQSG----HSILPK-SVNESRIKENFN 271 (318)
Q Consensus 202 ~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~--q~al~~~l~~~----~~vl~g-~~~~~~l~enl~ 271 (318)
+.|+.-+. +.+ .+.+..+..+.++.. +.+.. --+++++...| ...++| ..+.++..+.+.
T Consensus 149 eAGl~~i~----~~~-----~E~~~~~v~~~i~~~-~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~ 215 (343)
T TIGR03551 149 EAGLDSMP----GTA-----AEILDDEVRKVICPD-KLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLL 215 (343)
T ss_pred HhCccccc----Ccc-----hhhcCHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHH
Confidence 98887553 122 133333444444321 12332 23555555555 355667 366666666554
No 150
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=33.93 E-value=26 Score=30.90 Aligned_cols=60 Identities=18% Similarity=0.072 Sum_probs=33.4
Q ss_pred CccceeccCCCccCcccccccc----------------CCcchHHHHHHHHHHcCCCEEeCCCCCCCHHHHHHHHHh
Q 041263 8 GPVYFELNTGAKIPSVGLGTWK----------------APPGEVGEAVIAAVKAGYRHIDCAHVYDNEKEVGAALKQ 68 (318)
Q Consensus 8 ~~~~~~~~tg~~vs~lglG~~~----------------~~~~~~~~~l~~Al~~Gi~~~DtA~~YgsE~~lG~al~~ 68 (318)
..+++.|...-+|.++++.+.. .+-+-.......|.+.|++.||. .||.+|+..=+.|.+
T Consensus 158 ~~vr~~g~~~~~v~rVav~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~lI~~-gH~~sE~~~~~~l~~ 233 (241)
T PF01784_consen 158 PGVRVVGDPDKKVKRVAVCGGSGGSFIEEAAEAGADVYITGDIKYHDAQDAKENGINLIDA-GHYASERPGMEALAE 233 (241)
T ss_dssp S-EEEESCTTSEEEEEEEECSSSGGGHHHHHHTTSSEEEESS--HHHHHHHHHCTSEEEE---HHHHGGHHHHHHHH
T ss_pred CcEEecCCCCCcccEEEEEcccCccHHHHHHhCCCeEEEEccCcHHHHHHHHHCCCEEEEc-CCHHHHHHHHHHHHH
Confidence 3455556666778877665532 11223344556678889999986 467666554444443
No 151
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=33.52 E-value=38 Score=32.86 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=36.1
Q ss_pred hHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCCHHHHHHHHHhhcC---CeEecC
Q 041263 194 PALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQVALRWGLQSG---HSILPK 259 (318)
Q Consensus 194 ~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~---~~vl~g 259 (318)
..-+.+++++||+++.+.-+-+ ++.....--.+|..||.|..--.|+|++... .++++|
T Consensus 80 NpEi~~A~e~~ipi~~r~e~La-------elm~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 80 NPEIVAALERGIPVISRAEMLA-------ELMRFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred CHHHHHHHHcCCCeEcHHHHHH-------HHHhCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 4556667777777766643311 1111122233445588999999999999873 567766
No 152
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.25 E-value=4.1e+02 Score=24.90 Aligned_cols=99 Identities=21% Similarity=0.214 Sum_probs=60.9
Q ss_pred eEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC----eeEEEee--CCChHHHHHHHHhCC-CCCeeEEee
Q 041263 114 LYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGK----ARAIGVS--NFSTKKLKDLCSYAK-VKPAVNQVE 186 (318)
Q Consensus 114 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~----ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~ 186 (318)
.+-||.|+..........+.. .++.++++++.+..+... +-++=+. |.+.+++.++.+... .+..++-++
T Consensus 210 avSLha~~~e~R~~i~P~~~~---~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp 286 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKA---FSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIR 286 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccC---CCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEe
Confidence 477898765432211111111 467899999998765432 2233333 556777777766653 556788888
Q ss_pred ecCCCC-----C-----hHHHHHHHhcCcEEEEecCCCC
Q 041263 187 CHPVWQ-----Q-----PALHEYCKSSGVHLTAYSPLGS 215 (318)
Q Consensus 187 ~~~~~~-----~-----~~l~~~~~~~gi~v~a~~pl~~ 215 (318)
||+... . ....+..+++|+.+......|.
T Consensus 287 ~Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 287 FHAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 887432 1 2345568889999999877754
No 153
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=33.09 E-value=3e+02 Score=25.82 Aligned_cols=120 Identities=12% Similarity=0.097 Sum_probs=68.1
Q ss_pred CcchHHHHHHHHHHcC---CCEEeCCCCCCC-HHHHHHHHHhhhhcCCcCCCceEEEeccCC--CCCCCChHHHHHHHHH
Q 041263 31 PPGEVGEAVIAAVKAG---YRHIDCAHVYDN-EKEVGAALKQFFSTGVVKRDEMFITSKIWC--CDLAPEDVPKALSRSL 104 (318)
Q Consensus 31 ~~~~~~~~l~~Al~~G---i~~~DtA~~Ygs-E~~lG~al~~~~~~~~~~R~~~~i~tK~~~--~~~~~~~i~~~ve~SL 104 (318)
+.++..+++....+.- +-.+|..+..++ ...+-+.+. .+.-++|.+|+-. .....+.+.+-+.+-+
T Consensus 49 ~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~--------~~piilV~NK~DLl~k~~~~~~~~~~l~~~~ 120 (360)
T TIGR03597 49 NDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG--------GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA 120 (360)
T ss_pred CHHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC--------CCCEEEEEEchhhCCCCCCHHHHHHHHHHHH
Confidence 4455666555544321 235676555443 111112211 3566889999832 1122334555555566
Q ss_pred HHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHH
Q 041263 105 EHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLC 173 (318)
Q Consensus 105 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (318)
+..|....+++.+-.-. + ....+.++.|.++.+.+.+-.+|.+|.....+...+
T Consensus 121 k~~g~~~~~i~~vSAk~----g-----------~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l 174 (360)
T TIGR03597 121 KELGLKPVDIILVSAKK----G-----------NGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKL 174 (360)
T ss_pred HHcCCCcCcEEEecCCC----C-----------CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHH
Confidence 77775434555443221 1 557888888888877778999999999976654433
No 154
>PRK14017 galactonate dehydratase; Provisional
Probab=32.82 E-value=1e+02 Score=29.13 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCee-EEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCC---CChHHHHHHHhcCcEEEEecCC
Q 041263 144 WAAMEKLYDSGKAR-AIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVW---QQPALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 144 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~v~a~~pl 213 (318)
++.+.+|++...+. ..|=|.++...+..+++...+ +++|...+..- +-..+.+.|+++|+.++.++.+
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~--d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGV--DIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCC--CeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 47788888877665 566677888888888886543 77777654432 2257899999999999887654
No 155
>PRK09061 D-glutamate deacylase; Validated
Probab=32.75 E-value=4.7e+02 Score=25.79 Aligned_cols=109 Identities=13% Similarity=0.035 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCCEEeCCCCC--C-CHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCC-CCChHHHHHHHHHHHhCCC
Q 041263 35 VGEAVIAAVKAGYRHIDCAHVY--D-NEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDL-APEDVPKALSRSLEHLQLD 110 (318)
Q Consensus 35 ~~~~l~~Al~~Gi~~~DtA~~Y--g-sE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~-~~~~i~~~ve~SL~~Lg~d 110 (318)
..++++.|++.|+..|=+...| + +...+-+.++.. .+-+..|......... ++.....++++.++.....
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A------~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~~ 244 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLA------ARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAET 244 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHH------HHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHHh
Confidence 5677888999999999876556 2 455555665554 3556666666543221 2222334455554433222
Q ss_pred ccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEee
Q 041263 111 YIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVS 162 (318)
Q Consensus 111 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs 162 (318)
-.-+...|--.... ....+.++.+++.+++|.--..-++
T Consensus 245 G~rv~IsHlss~g~-------------~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 245 GAHMHICHVNSTSL-------------RDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred CCCEEEEeeccCCc-------------ccHHHHHHHHHHHHHcCCcEEEEec
Confidence 23366667532211 3357788999999999853333343
No 156
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=32.71 E-value=2.4e+02 Score=23.82 Aligned_cols=146 Identities=12% Similarity=0.081 Sum_probs=72.7
Q ss_pred CCcchHHHHHHHHHHcCCCEEeCCCCCC--CHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHh
Q 041263 30 APPGEVGEAVIAAVKAGYRHIDCAHVYD--NEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHL 107 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg--sE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~L 107 (318)
.+.+++.++++.+++.|++..|.-...- .-..+|+.. .++++++.-=. +..+.+++.+......+
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i~~~~l~p~m~~iG~~w---------~~gei~va~~~----~a~~~~~~~l~~l~~~~ 75 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIELIEKGLMAGMGVVGKLF---------EDGELFLPHVM----MSADAMLAGIKVLTPEM 75 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH---------cCCCccHHHHH----HHHHHHHHHHHHHHHHh
Confidence 4677889999999999987776532110 122233322 23344432111 11233444444444444
Q ss_pred CCC----ccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC-eeEEEeeCCChHHHHHHHHhCCCCCee
Q 041263 108 QLD----YIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGK-ARAIGVSNFSTKKLKDLCSYAKVKPAV 182 (318)
Q Consensus 108 g~d----~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~~ 182 (318)
... .---+++-.+... .+..+..-.-.-|+..|. +.++|... +++.+.+.+.. .+|++
T Consensus 76 ~~~~~~~~~~~vv~~t~~gd--------------~H~lG~~~v~~~l~~~G~~vi~LG~~v-p~e~~v~~~~~--~~pd~ 138 (197)
T TIGR02370 76 EKAVETEVLGKVVCGVAEGD--------------VHDIGKNIVVTMLRANGFDVIDLGRDV-PIDTVVEKVKK--EKPLM 138 (197)
T ss_pred hccccCCCCCeEEEEeCCCc--------------hhHHHHHHHHHHHHhCCcEEEECCCCC-CHHHHHHHHHH--cCCCE
Confidence 311 1112222222211 222333333444555665 66777554 66666666555 45577
Q ss_pred EEeeecCCCCC---hHHHHHHHhcCc
Q 041263 183 NQVECHPVWQQ---PALHEYCKSSGV 205 (318)
Q Consensus 183 ~q~~~~~~~~~---~~l~~~~~~~gi 205 (318)
+.+.+.....- .++++.+++.|.
T Consensus 139 v~lS~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 139 LTGSALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred EEEccccccCHHHHHHHHHHHHHcCC
Confidence 76666544433 467888888743
No 157
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=32.58 E-value=4.9e+02 Score=25.55 Aligned_cols=156 Identities=12% Similarity=0.042 Sum_probs=83.0
Q ss_pred cccccCCcchHHHHHHHHHHcCCCEEeCCCCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHH
Q 041263 25 LGTWKAPPGEVGEAVIAAVKAGYRHIDCAHVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSL 104 (318)
Q Consensus 25 lG~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL 104 (318)
+|.-..+++-....++.|.++||..|=..+.-...+.+-.+++..-..| ..-.+.|+-... +.++.+++.+.+++ +
T Consensus 97 vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G--~~~~~~i~yt~s-p~~t~~y~~~~a~~-l 172 (468)
T PRK12581 97 LGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTG--KEAQLCIAYTTS-PVHTLNYYLSLVKE-L 172 (468)
T ss_pred cCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcC--CEEEEEEEEEeC-CcCcHHHHHHHHHH-H
Confidence 4444455566777899999999998877766543333444443321113 111133333321 22334445555554 4
Q ss_pred HHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCCh-----HHHHHHHHhCCCC
Q 041263 105 EHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFST-----KKLKDLCSYAKVK 179 (318)
Q Consensus 105 ~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~-----~~l~~~~~~~~~~ 179 (318)
..+|.+ .+.|-..... ..+.++.+.+..+++...+ -||+=.|+- .....+++. +
T Consensus 173 ~~~Gad---~I~IkDtaG~--------------l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt~GlA~An~laAieA-G-- 231 (468)
T PRK12581 173 VEMGAD---SICIKDMAGI--------------LTPKAAKELVSGIKAMTNL-PLIVHTHATSGISQMTYLAAVEA-G-- 231 (468)
T ss_pred HHcCCC---EEEECCCCCC--------------cCHHHHHHHHHHHHhccCC-eEEEEeCCCCccHHHHHHHHHHc-C--
Confidence 567854 4444432221 5567777777777776554 488877763 233333332 2
Q ss_pred CeeEEeeecCCCCC------hHHHHHHHhcCc
Q 041263 180 PAVNQVECHPVWQQ------PALHEYCKSSGV 205 (318)
Q Consensus 180 ~~~~q~~~~~~~~~------~~l~~~~~~~gi 205 (318)
.+.+..-++++-.. +.++..++..|+
T Consensus 232 ad~vD~ai~g~g~gagN~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 232 ADRIDTALSPFSEGTSQPATESMYLALKEAGY 263 (468)
T ss_pred CCEEEeeccccCCCcCChhHHHHHHHHHhcCC
Confidence 35566666665443 345555555443
No 158
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.57 E-value=4e+02 Score=25.26 Aligned_cols=100 Identities=14% Similarity=0.005 Sum_probs=61.5
Q ss_pred ceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CC---eeEEEeeC--CChHHHHHHHHhCC-C---CCee
Q 041263 113 DLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDS-GK---ARAIGVSN--FSTKKLKDLCSYAK-V---KPAV 182 (318)
Q Consensus 113 Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~---ir~iGvs~--~~~~~l~~~~~~~~-~---~~~~ 182 (318)
=.+-||.++..........+.. .++.++++++.+..++ |+ |+++=+.+ .+.+++.++.+... . ...+
T Consensus 240 LavSLha~d~e~R~~l~p~n~~---~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~V 316 (373)
T PRK14459 240 LAVSLHAPDDELRDELVPVNTR---WKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHV 316 (373)
T ss_pred EEEEeCCCCHHHHHHhcCcccC---CCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEE
Confidence 3467898876542211111111 5678999998888744 54 55555553 34555555555433 2 4578
Q ss_pred EEeeecCCCCC----------hHHHHHHHhcCcEEEEecCCCC
Q 041263 183 NQVECHPVWQQ----------PALHEYCKSSGVHLTAYSPLGS 215 (318)
Q Consensus 183 ~q~~~~~~~~~----------~~l~~~~~~~gi~v~a~~pl~~ 215 (318)
+-++||++... ....+..+++|+.+......|.
T Consensus 317 NLIpyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 317 NLIPLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred EEEccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 88889986431 2356668899999999887754
No 159
>PRK01060 endonuclease IV; Provisional
Probab=32.53 E-value=2.8e+02 Score=24.47 Aligned_cols=25 Identities=8% Similarity=0.143 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhCCCccceEeecCCCC
Q 041263 96 VPKALSRSLEHLQLDYIDLYLIHWPFR 122 (318)
Q Consensus 96 i~~~ve~SL~~Lg~d~iDl~~lH~p~~ 122 (318)
+.+.+ +.++++|.|.++|+ ++.|..
T Consensus 14 ~~~~l-~~~~~~G~d~vEl~-~~~p~~ 38 (281)
T PRK01060 14 LEGAV-AEAAEIGANAFMIF-TGNPQQ 38 (281)
T ss_pred HHHHH-HHHHHcCCCEEEEE-CCCCCC
Confidence 44433 56778899999975 445543
No 160
>PLN02775 Probable dihydrodipicolinate reductase
Probab=32.30 E-value=2.4e+02 Score=25.65 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHh
Q 041263 99 ALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSY 175 (318)
Q Consensus 99 ~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 175 (318)
.+++.|..+.-+|.|++++.. ..+..+.+.++.+.+.|+--=+|.+.|+.+++.++.+.
T Consensus 67 dl~~~l~~~~~~~~~~VvIDF------------------T~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~ 125 (286)
T PLN02775 67 EREAVLSSVKAEYPNLIVVDY------------------TLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEE 125 (286)
T ss_pred cHHHHHHHhhccCCCEEEEEC------------------CChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhc
Confidence 345555555556789777764 45578899999999999999999999999998877664
No 161
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=32.08 E-value=2.9e+02 Score=23.15 Aligned_cols=62 Identities=11% Similarity=-0.006 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcC--CeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEE
Q 041263 143 TWAAMEKLYDSG--KARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHL 207 (318)
Q Consensus 143 ~~~~L~~l~~~G--~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v 207 (318)
.++.++++++.. .+. +.+-..+.....+.+...+ .+.+|+...........++.++++|+.+
T Consensus 44 ~~~~v~~i~~~~~~~v~-v~lm~~~~~~~~~~~~~~g--adgv~vh~~~~~~~~~~~~~~~~~g~~~ 107 (210)
T TIGR01163 44 GPPVLEALRKYTDLPID-VHLMVENPDRYIEDFAEAG--ADIITVHPEASEHIHRLLQLIKDLGAKA 107 (210)
T ss_pred CHHHHHHHHhcCCCcEE-EEeeeCCHHHHHHHHHHcC--CCEEEEccCCchhHHHHHHHHHHcCCcE
Confidence 445666666543 333 6677666655544444443 3666665433222245667777777664
No 162
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=31.97 E-value=3.7e+02 Score=23.89 Aligned_cols=29 Identities=10% Similarity=0.021 Sum_probs=22.9
Q ss_pred cCCcchHHHHHHHHHHcCCCEEeCCCCCC
Q 041263 29 KAPPGEVGEAVIAAVKAGYRHIDCAHVYD 57 (318)
Q Consensus 29 ~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg 57 (318)
..|.+...+.++..++.|++-+-.....|
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstG 42 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTG 42 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 45667788999999999999887666555
No 163
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=31.90 E-value=4.6e+02 Score=25.00 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=77.4
Q ss_pred CCcchHHHHHHHHHHcCCCE-EeCCCCCCCHHHHHHHHHhhhhcCCcCCCceEEEe--------ccC--CCCCCCChHHH
Q 041263 30 APPGEVGEAVIAAVKAGYRH-IDCAHVYDNEKEVGAALKQFFSTGVVKRDEMFITS--------KIW--CCDLAPEDVPK 98 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~-~DtA~~YgsE~~lG~al~~~~~~~~~~R~~~~i~t--------K~~--~~~~~~~~i~~ 98 (318)
.+-++-.+-+..|.+.|... .|.+. .|.-..+-+++-+. .++-|.| |+. ..+++.+.+..
T Consensus 75 ~~i~~EveK~~~A~~~GADtvMDLSt-Ggdl~eiR~~ii~~--------s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~~ 145 (432)
T COG0422 75 SDIDEEVEKAVWAIKWGADTVMDLST-GGDLHEIREWIIRN--------SPVPVGTVPIYQALEEVNGKVEDLTEDDFFD 145 (432)
T ss_pred CCHHHHHHHHHHHHHhCcceeEeccc-CCCHHHHHHHHHhc--------CCCCcCCchHHHHHHHHhcchhhCCHHHHHH
Confidence 34455556677889999764 46543 35443343433321 1111111 001 13455666666
Q ss_pred HHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCCC
Q 041263 99 ALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAKV 178 (318)
Q Consensus 99 ~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 178 (318)
.+++..+ +-+|.+-+|. .-.++.++.+++.|++ .|+-+=...-+...+-...
T Consensus 146 ~v~~qa~----~GVdfmTIHa---------------------GV~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~~~- 197 (432)
T COG0422 146 TVEKQAE----QGVDFMTIHA---------------------GVLLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLHNH- 197 (432)
T ss_pred HHHHHHH----hCCcEEEeeh---------------------hhhHHHHHHHHhcCce--eeeeccchHHHHHHHHHcC-
Confidence 6666654 3478888895 2245789999999885 5665544444433332211
Q ss_pred CCeeEEeeecCCCCC-hHHHHHHHhcCcEEEEecCCCCC
Q 041263 179 KPAVNQVECHPVWQQ-PALHEYCKSSGVHLTAYSPLGSP 216 (318)
Q Consensus 179 ~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~g 216 (318)
.-||+..+ .++++.|+++++.+.--..+.-|
T Consensus 198 -------~ENply~~fd~lleI~k~yDvtlSLGDglRPG 229 (432)
T COG0422 198 -------KENPLYEHFDELLEIFKEYDVTLSLGDGLRPG 229 (432)
T ss_pred -------CcCchhhhHHHHHHHHHHhCeeeeccCCCCCC
Confidence 12444444 46677777777766555444433
No 164
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=31.60 E-value=1.7e+02 Score=30.71 Aligned_cols=46 Identities=9% Similarity=0.195 Sum_probs=34.9
Q ss_pred hHHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCC
Q 041263 166 TKKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 213 (318)
.+.+..+.+..+ .+.+.--|.++..+.+..+.|.+.||.+|.-+|=
T Consensus 69 IdeII~iAk~~g--aDaIhPGYGfLSEn~efA~~c~eaGI~FIGP~~e 114 (1149)
T COG1038 69 IDEIIRIAKRSG--ADAIHPGYGFLSENPEFARACAEAGITFIGPKPE 114 (1149)
T ss_pred HHHHHHHHHHcC--CCeecCCcccccCCHHHHHHHHHcCCEEeCCCHH
Confidence 344444444444 3778888899999999999999999999987663
No 165
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=31.58 E-value=4.2e+02 Score=26.96 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=40.9
Q ss_pred HHhCCCccceEeecC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEee-CCChHHHHHHHHhCCCCCee
Q 041263 105 EHLQLDYIDLYLIHW-PFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVS-NFSTKKLKDLCSYAKVKPAV 182 (318)
Q Consensus 105 ~~Lg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~ 182 (318)
..+|.|++=+++... |.. .+.+.....+.+......+..+||- |-+++.+.++.+.. .+++
T Consensus 20 ~~~gaD~iGfIf~~~SpR~---------------V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~--~ld~ 82 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRF---------------VGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKN--GIDF 82 (610)
T ss_pred HHcCCCEEEEEecCCCCCC---------------CCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhc--CCCE
Confidence 468999999885443 221 3334412233333333357789985 77788888887764 4588
Q ss_pred EEeee
Q 041263 183 NQVEC 187 (318)
Q Consensus 183 ~q~~~ 187 (318)
+|+.-
T Consensus 83 vQLHG 87 (610)
T PRK13803 83 VQLHG 87 (610)
T ss_pred EEECC
Confidence 88874
No 166
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=31.58 E-value=1.6e+02 Score=29.13 Aligned_cols=128 Identities=17% Similarity=0.115 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCCEE--eCCCCC---CC-------HHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCC-CC---------
Q 041263 37 EAVIAAVKAGYRHI--DCAHVY---DN-------EKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLA-PE--------- 94 (318)
Q Consensus 37 ~~l~~Al~~Gi~~~--DtA~~Y---gs-------E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~-~~--------- 94 (318)
+-+++..+.|+..+ =||.+| |+ -..+..+-++.|... .+-++||++-++..... |.
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~--L~Gk~~lTaGLGGMgGAQplA~~m~g~v~ 183 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGD--LAGKLFLTAGLGGMGGAQPLAATMAGGVG 183 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS---TT-EEEEE--STTCCHHHHHHHHTT-EE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCC--CcceEEEEecccccccchHHHHHhcCceE
Confidence 55677778898876 366665 32 445566667776633 68899999998652210 00
Q ss_pred -hHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHH
Q 041263 95 -DVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLC 173 (318)
Q Consensus 95 -~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (318)
-+.-.-...-+|+.+.|+|.+. .++.++++..++.+++|+..+||+-..-.+.+++++
T Consensus 184 l~vEvd~~ri~kR~~~g~ld~~~---------------------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~ 242 (546)
T PF01175_consen 184 LIVEVDPSRIEKRLEQGYLDEVT---------------------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELV 242 (546)
T ss_dssp EEEES-HHHHHHHHHTTSSSEEE---------------------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHH
T ss_pred EEEEECHHHHHHHHhCCCeeEEc---------------------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHH
Confidence 0001123344678888998871 567999999999999999999999997888888887
Q ss_pred HhCC-CCCeeEEeee
Q 041263 174 SYAK-VKPAVNQVEC 187 (318)
Q Consensus 174 ~~~~-~~~~~~q~~~ 187 (318)
+..- +++...|...
T Consensus 243 ~~~i~pDl~tDQTS~ 257 (546)
T PF01175_consen 243 ERGIIPDLVTDQTSA 257 (546)
T ss_dssp HTT---SEE---SST
T ss_pred HcCCCCCcccCCCcc
Confidence 7632 3334457765
No 167
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=31.55 E-value=5.1e+02 Score=25.43 Aligned_cols=68 Identities=10% Similarity=0.043 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHcCCeeE----EEeeCCChHHHHHHHHhC-CCCCeeEEeeecCCCCChHHHHHHHhcCc
Q 041263 138 LCLPETWAAMEKLYDSGKARA----IGVSNFSTKKLKDLCSYA-KVKPAVNQVECHPVWQQPALHEYCKSSGV 205 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~~~~~~-~~~~~~~q~~~~~~~~~~~l~~~~~~~gi 205 (318)
.+.++..++++.+++.|..-. +|+-+-+.+.+.+.++.+ ..+++..++..-...+..++.+.+++.+.
T Consensus 320 ~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 320 TTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEEecCCCCcHHHHHHHhhcc
Confidence 456778899999999986333 455566666666555543 23445444432222344677777777653
No 168
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=31.50 E-value=1.2e+02 Score=27.05 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=26.4
Q ss_pred ccCCcchHHHHHHHHHHcCCCEEeCCCCCC--CHHHHHHHHHhh
Q 041263 28 WKAPPGEVGEAVIAAVKAGYRHIDCAHVYD--NEKEVGAALKQF 69 (318)
Q Consensus 28 ~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg--sE~~lG~al~~~ 69 (318)
++.+.+...++++.+.+.|...|=-++..| ....+.+.++..
T Consensus 136 ~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 136 FRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTL 179 (262)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHH
Confidence 345666677777777777777775556666 444555555543
No 169
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=31.43 E-value=2.3e+02 Score=26.61 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=50.8
Q ss_pred CCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHH
Q 041263 91 LAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLK 170 (318)
Q Consensus 91 ~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~ 170 (318)
.+.+.++.-+++.|++.|+.. +.-++..+..-.+- ..|+.+|....+.
T Consensus 6 ~~~e~L~~~~~~vl~~~G~~e------------------------------e~A~~vA~~lv~ad--~~G~~SHGv~r~p 53 (349)
T COG2055 6 VSAEELKALIEEVLRKAGVPE------------------------------EDARAVADVLVAAD--LRGVDSHGVGRLP 53 (349)
T ss_pred ecHHHHHHHHHHHHHHcCCCH------------------------------HHHHHHHHHHHHHH--hcCCcccchHHHH
Confidence 356788899999999998742 12222222222222 3678888877776
Q ss_pred HHHHhC---CC----C-------CeeEEeeecCCCCC-------hHHHHHHHhcCcEEEEe
Q 041263 171 DLCSYA---KV----K-------PAVNQVECHPVWQQ-------PALHEYCKSSGVHLTAY 210 (318)
Q Consensus 171 ~~~~~~---~~----~-------~~~~q~~~~~~~~~-------~~l~~~~~~~gi~v~a~ 210 (318)
.+++.. ++ . +.+.++.-+--.-+ +..++.|+++||++++-
T Consensus 54 ~yi~~l~~G~i~~~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~vav 114 (349)
T COG2055 54 GYVRRLKAGKINPDAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVAV 114 (349)
T ss_pred HHHHHHHcCCcCCCCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEEE
Confidence 665542 22 2 22222222111111 45799999999998886
No 170
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=31.16 E-value=4.3e+02 Score=24.45 Aligned_cols=149 Identities=13% Similarity=0.059 Sum_probs=81.0
Q ss_pred cccccccCCcchHHHHHHHHHHcCCCEEe----------CCCCCC-----CHHHHHHHHHhhhhcCCcCCCceEEEecc-
Q 041263 23 VGLGTWKAPPGEVGEAVIAAVKAGYRHID----------CAHVYD-----NEKEVGAALKQFFSTGVVKRDEMFITSKI- 86 (318)
Q Consensus 23 lglG~~~~~~~~~~~~l~~Al~~Gi~~~D----------tA~~Yg-----sE~~lG~al~~~~~~~~~~R~~~~i~tK~- 86 (318)
+++-.+..++++..+..+.+.+.|+..|| +.+.|| ..+.+.+.++.. . ..-.+-|+.|+
T Consensus 67 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~av-r----~~v~~pVsvKiR 141 (333)
T PRK11815 67 VALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAM-K----DAVSIPVTVKHR 141 (333)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHH-H----HHcCCceEEEEE
Confidence 44444556777777888888889999998 556787 245555666554 1 11135677775
Q ss_pred -CCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeeEEEeeCC
Q 041263 87 -WCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSG-KARAIGVSNF 164 (318)
Q Consensus 87 -~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~ 164 (318)
+..+.....-...+-+.|+..| +|.+.+|.......+.....+.. . ...-|+.+.++++.- .|--||....
T Consensus 142 ~g~~~~~t~~~~~~~~~~l~~aG---~d~i~vh~Rt~~~~g~~~~~~~~---~-~~~~~~~i~~v~~~~~~iPVI~nGgI 214 (333)
T PRK11815 142 IGIDDQDSYEFLCDFVDTVAEAG---CDTFIVHARKAWLKGLSPKENRE---I-PPLDYDRVYRLKRDFPHLTIEINGGI 214 (333)
T ss_pred eeeCCCcCHHHHHHHHHHHHHhC---CCEEEEcCCchhhcCCCcccccc---C-CCcCHHHHHHHHHhCCCCeEEEECCc
Confidence 3222110011123334455566 67778995432111111000000 0 012367777787763 6777777765
Q ss_pred -ChHHHHHHHHhCCCCCeeEEeee
Q 041263 165 -STKKLKDLCSYAKVKPAVNQVEC 187 (318)
Q Consensus 165 -~~~~l~~~~~~~~~~~~~~q~~~ 187 (318)
+++++.++++. .+.+++-=
T Consensus 215 ~s~eda~~~l~~----aDgVmIGR 234 (333)
T PRK11815 215 KTLEEAKEHLQH----VDGVMIGR 234 (333)
T ss_pred CCHHHHHHHHhc----CCEEEEcH
Confidence 47777777752 45565553
No 171
>PLN02363 phosphoribosylanthranilate isomerase
Probab=31.15 E-value=2.2e+02 Score=25.36 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=39.5
Q ss_pred HHhCCCccceEeecC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEee-CCChHHHHHHHHhCCCCCee
Q 041263 105 EHLQLDYIDLYLIHW-PFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVS-NFSTKKLKDLCSYAKVKPAV 182 (318)
Q Consensus 105 ~~Lg~d~iDl~~lH~-p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~~ 182 (318)
.++|.|++=+++... |.. .+.+.+ +.+.+......++.+||- +-+++.+.++++.. .+++
T Consensus 64 ~~~GaD~iGfIf~~~SpR~---------------Vs~e~a-~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~--~ld~ 125 (256)
T PLN02363 64 VEAGADFIGMILWPKSKRS---------------ISLSVA-KEISQVAREGGAKPVGVFVDDDANTILRAADSS--DLEL 125 (256)
T ss_pred HHcCCCEEEEecCCCCCCc---------------CCHHHH-HHHHHhccccCccEEEEEeCCCHHHHHHHHHhc--CCCE
Confidence 368999999874332 211 333333 333333333246679985 77788888887764 4588
Q ss_pred EEee
Q 041263 183 NQVE 186 (318)
Q Consensus 183 ~q~~ 186 (318)
+|+.
T Consensus 126 VQLH 129 (256)
T PLN02363 126 VQLH 129 (256)
T ss_pred EEEC
Confidence 8986
No 172
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=31.04 E-value=1.9e+02 Score=26.97 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCee-EEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCC---CChHHHHHHHhcCcEEEEec
Q 041263 144 WAAMEKLYDSGKAR-AIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVW---QQPALHEYCKSSGVHLTAYS 211 (318)
Q Consensus 144 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~v~a~~ 211 (318)
++.+.+|+++.-+. +.|=|.+++..+..+++... .+++|......- .-..+.+.|+++|+.++.++
T Consensus 216 ~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~--~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 216 VEALAEIAARTTIPIATGERLFSRWDFKELLEDGA--VDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCC--CCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 56777777765554 45556677778777766543 366666643332 12467888888888887654
No 173
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=30.88 E-value=3.7e+02 Score=23.58 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCeeEEEeeCC-ChHHHHHHHHhCCCCCeeEEeeecCC-CCChHHHHHHHhcCcEE
Q 041263 144 WAAMEKLYDSGKARAIGVSNF-STKKLKDLCSYAKVKPAVNQVECHPV-WQQPALHEYCKSSGVHL 207 (318)
Q Consensus 144 ~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~-~~~~~l~~~~~~~gi~v 207 (318)
|+.+.++.+.-.+.-|.-... +.+.+.++++..++.-+++---++-. ..-.++.+.|++.|+.+
T Consensus 186 ~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 186 LELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 455555555544555554433 35666666654343222221111111 11146667777666643
No 174
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.84 E-value=3.9e+02 Score=24.81 Aligned_cols=80 Identities=18% Similarity=0.092 Sum_probs=48.8
Q ss_pred HHHHHHhcCcEEEEecCCCCCCCCCcccc----------------------cchHHHHHHHHHhCCCH--HHHHHHHHhh
Q 041263 196 LHEYCKSSGVHLTAYSPLGSPGSWVKGEI----------------------LKEAILQEIAGELNKSP--AQVALRWGLQ 251 (318)
Q Consensus 196 l~~~~~~~gi~v~a~~pl~~g~l~~~~~~----------------------~~~~~l~~la~~~~~s~--~q~al~~~l~ 251 (318)
+.+.|....=-|+.-+|.|+|..|.-..+ +.+.+-----++.|... -.-||+.+|.
T Consensus 117 ~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALR 196 (353)
T COG2805 117 VRELAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALR 196 (353)
T ss_pred HHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhh
Confidence 45566655555778889988864422111 11111111112234333 3458888887
Q ss_pred c-CCeEecC-CCCHHHHHHhhcccCC
Q 041263 252 S-GHSILPK-SVNESRIKENFNLFDW 275 (318)
Q Consensus 252 ~-~~~vl~g-~~~~~~l~enl~~~~~ 275 (318)
. |.++++| +++.|-+.-.+.+++.
T Consensus 197 eDPDVIlvGEmRD~ETi~~ALtAAET 222 (353)
T COG2805 197 EDPDVILVGEMRDLETIRLALTAAET 222 (353)
T ss_pred cCCCEEEEeccccHHHHHHHHHHHhc
Confidence 7 6899999 8999999998887764
No 175
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=30.69 E-value=2.7e+02 Score=23.90 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCeeEEEeeCCC-hHHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCCCCCCCCCc
Q 041263 143 TWAAMEKLYDSGKARAIGVSNFS-TKKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPGSWVK 221 (318)
Q Consensus 143 ~~~~L~~l~~~G~ir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~l~~~ 221 (318)
.++.+++++++..=-.||..+.. +++++.+++..- ++-.+|.. +.+++++|+++|+.++. |.+|
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA------~FivsP~~-~~~v~~~~~~~~i~~iP------G~~T-- 110 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA------QFIVSPGL-TPELAKHAQDHGIPIIP------GVAT-- 110 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC------CEEECCCC-CHHHHHHHHHcCCcEEC------CCCC--
Confidence 45666666665432468887754 778888877543 22244432 57999999999998776 2221
Q ss_pred ccccchHHHHHHHHHhCC-----CHHHHH--HHHHhh--cC----CeEecCCCCHHHHHHhhcc
Q 041263 222 GEILKEAILQEIAGELNK-----SPAQVA--LRWGLQ--SG----HSILPKSVNESRIKENFNL 272 (318)
Q Consensus 222 ~~~~~~~~l~~la~~~~~-----s~~q~a--l~~~l~--~~----~~vl~g~~~~~~l~enl~~ 272 (318)
..+.+..+ ++|. =|+... ..|+-+ -| ..+-+|--+.+.+.+.+++
T Consensus 111 ----ptEi~~A~--~~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~ptGGV~~~N~~~~l~a 168 (204)
T TIGR01182 111 ----PSEIMLAL--ELGITALKLFPAEVSGGVKMLKALAGPFPQVRFCPTGGINLANVRDYLAA 168 (204)
T ss_pred ----HHHHHHHH--HCCCCEEEECCchhcCCHHHHHHHhccCCCCcEEecCCCCHHHHHHHHhC
Confidence 11222222 3342 344433 466533 22 1334566777888888763
No 176
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=30.67 E-value=3.9e+02 Score=23.81 Aligned_cols=29 Identities=3% Similarity=-0.019 Sum_probs=22.3
Q ss_pred cCCcchHHHHHHHHHHcCCCEEeCCCCCC
Q 041263 29 KAPPGEVGEAVIAAVKAGYRHIDCAHVYD 57 (318)
Q Consensus 29 ~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg 57 (318)
+.+.+...+.++..++.|++-+-.....|
T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gl~v~GstG 45 (284)
T cd00950 17 SVDFDALERLIEFQIENGTDGLVVCGTTG 45 (284)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 35677788999999999999877555554
No 177
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=30.55 E-value=4.2e+02 Score=24.18 Aligned_cols=160 Identities=14% Similarity=0.152 Sum_probs=79.5
Q ss_pred CCcchHHHHHHHHHHcCCCEEeCCCCCC---CHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHH
Q 041263 30 APPGEVGEAVIAAVKAGYRHIDCAHVYD---NEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEH 106 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---sE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~ 106 (318)
.+.++..++++.+.+.|++.|.-.. | -..-+-+.++..- +. ..-.++.|+|-.. .+.+. -+.|..
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~i~-~~-~~~~~i~itTNG~-------ll~~~-~~~L~~ 116 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAALA-AL-PGIRDLALTTNGY-------LLARR-AAALKD 116 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHHHH-hc-CCCceEEEEcCch-------hHHHH-HHHHHH
Confidence 3456788888888899998876532 3 1112334444320 00 0123567776631 12222 234555
Q ss_pred hCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC----eeEEEeeCCChHHHHHHHHhCC-CCCe
Q 041263 107 LQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGK----ARAIGVSNFSTKKLKDLCSYAK-VKPA 181 (318)
Q Consensus 107 Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~----ir~iGvs~~~~~~l~~~~~~~~-~~~~ 181 (318)
.|++.+- +-+|..+...... ... ......++++++.+++.|. |..+.+...+.+++.++++.+. ....
T Consensus 117 agl~~i~-ISlds~~~e~~~~--i~~----~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~ 189 (331)
T PRK00164 117 AGLDRVN-VSLDSLDPERFKA--ITG----RDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQ 189 (331)
T ss_pred cCCCEEE-EEeccCCHHHhcc--CCC----CCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCe
Confidence 5655442 3344433211000 000 1457889999999999885 3344444445556655555442 2223
Q ss_pred eEEeeecCCCCC-----------hHHHHHHHhcCcEEE
Q 041263 182 VNQVECHPVWQQ-----------PALHEYCKSSGVHLT 208 (318)
Q Consensus 182 ~~q~~~~~~~~~-----------~~l~~~~~~~gi~v~ 208 (318)
+.-+++.++... .++++..+++|+.+.
T Consensus 190 v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (331)
T PRK00164 190 LRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQ 227 (331)
T ss_pred EEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccc
Confidence 333333332210 356666776655443
No 178
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.41 E-value=4.6e+02 Score=24.53 Aligned_cols=150 Identities=16% Similarity=0.188 Sum_probs=83.0
Q ss_pred CHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhC-CCccceEeecCCCCCCCCCCCCCCCCCC
Q 041263 58 NEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQ-LDYIDLYLIHWPFRTKPETRGFEPDIML 136 (318)
Q Consensus 58 sE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~~~~ 136 (318)
+-..+-++++.....-.+....+.|+| .| .+..+++-.+.-+++|| .+....+-||.++.......... ...
T Consensus 163 n~~~v~~~i~~l~~~~~i~~r~itvST-~G----~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~-~~~- 235 (345)
T PRK14457 163 NIDEVLAAIRCLNQDLGIGQRRITVST-VG----VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPS-AKN- 235 (345)
T ss_pred CHHHHHHHHHHHhcccCCccCceEEEC-CC----chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCC-ccC-
Confidence 445566777765221113344667777 22 12344444444444443 23457788998876542211000 011
Q ss_pred CCCHHHHHHHHHH-HHHcCC---eeEEEee--CCChHHHHHHHHhCC-CCCeeEEeeecCCCCC----------hHHHHH
Q 041263 137 PLCLPETWAAMEK-LYDSGK---ARAIGVS--NFSTKKLKDLCSYAK-VKPAVNQVECHPVWQQ----------PALHEY 199 (318)
Q Consensus 137 ~~~~~~~~~~L~~-l~~~G~---ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~l~~~ 199 (318)
.++.++++++.+ +.+.|+ ++++=+. |.+.++++++.+... .+..++-++||++... ....+.
T Consensus 236 -~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~ 314 (345)
T PRK14457 236 -YPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRV 314 (345)
T ss_pred -CCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHH
Confidence 457788877766 445554 5555554 445677766666543 3456777888876431 234556
Q ss_pred HHhcCcEEEEecCCCC
Q 041263 200 CKSSGVHLTAYSPLGS 215 (318)
Q Consensus 200 ~~~~gi~v~a~~pl~~ 215 (318)
++++|+.+......|.
T Consensus 315 L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 315 LEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHCCCeEEEeCCCCC
Confidence 7788999888776643
No 179
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.20 E-value=4.6e+02 Score=24.51 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=59.1
Q ss_pred eEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CC---eeEEEee--CCChHHHHHHHHhCC-CCCeeEEee
Q 041263 114 LYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDS-GK---ARAIGVS--NFSTKKLKDLCSYAK-VKPAVNQVE 186 (318)
Q Consensus 114 l~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~---ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~ 186 (318)
.+-||.|+..........+.. .+++++++++.++.++ |+ ++++=+. |.+.++++++.+... .+..++-++
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~---~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIP 291 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEK---FPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIP 291 (342)
T ss_pred EEEecCCChhhcceEeecccc---CCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEc
Confidence 356888876543322111111 4578999999988755 33 3344444 344666666655542 345677788
Q ss_pred ecCCCCC---------hHHHHHHHhcCcEEEEecCCCC
Q 041263 187 CHPVWQQ---------PALHEYCKSSGVHLTAYSPLGS 215 (318)
Q Consensus 187 ~~~~~~~---------~~l~~~~~~~gi~v~a~~pl~~ 215 (318)
||+...+ ....+..+++|+.+......|.
T Consensus 292 yN~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 292 LNTEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 8874321 2345567888999999887754
No 180
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=30.00 E-value=5.6e+02 Score=25.39 Aligned_cols=140 Identities=15% Similarity=0.149 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCC
Q 041263 56 YDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIM 135 (318)
Q Consensus 56 YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 135 (318)
+|.+..+-++|++....- +.+=++|.|-+ ....--+++..-+++.-+++ -++++.+|.|.....
T Consensus 67 ~Gg~~kL~~~I~~~~~~~--~P~~I~V~tTC-~~eiIGDDi~~v~~~~~~~~---~~pVi~v~t~~f~g~---------- 130 (513)
T CHL00076 67 RGSQEKVVDNITRKDKEE--RPDLIVLTPTC-TSSILQEDLQNFVDRASIES---DSDVILADVNHYRVN---------- 130 (513)
T ss_pred cchHHHHHHHHHHHHHhc--CCCEEEECCCC-chhhhhcCHHHHHHHhhccc---CCCEEEeCCCCCccc----------
Confidence 366555666666542211 33334444443 22222244444444432233 378999999865421
Q ss_pred CCCCHHHHHHHHHHHH------------------HcCCeeEEEeeC------CChHHHHHHHHhCCCCCeeEE-------
Q 041263 136 LPLCLPETWAAMEKLY------------------DSGKARAIGVSN------FSTKKLKDLCSYAKVKPAVNQ------- 184 (318)
Q Consensus 136 ~~~~~~~~~~~L~~l~------------------~~G~ir~iGvs~------~~~~~l~~~~~~~~~~~~~~q------- 184 (318)
.....-.+++.++ ..++|--||.++ .+...+..+++..++.+..+-
T Consensus 131 ---~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~ 207 (513)
T CHL00076 131 ---ELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVE 207 (513)
T ss_pred ---HHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHH
Confidence 1112222333332 236688888764 345677888887665332111
Q ss_pred -------eeecCCC-CC--hHHHHHHH-hcCcEEEEecCCC
Q 041263 185 -------VECHPVW-QQ--PALHEYCK-SSGVHLTAYSPLG 214 (318)
Q Consensus 185 -------~~~~~~~-~~--~~l~~~~~-~~gi~v~a~~pl~ 214 (318)
-.+|+.. +. ..+.++.+ +.|+..+...|+|
T Consensus 208 di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 208 DLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred HHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 0112211 11 23444444 5699988878885
No 181
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=29.86 E-value=1.9e+02 Score=28.86 Aligned_cols=76 Identities=13% Similarity=0.058 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCC
Q 041263 138 LCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 213 (318)
.+..++.+.+.+.++..+|+.||+-.+...++...++..+++++.+--.+.-+...-.-++..-..|+-+-.-.|+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGAIKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCchhHHHHHHHhcCcEEECCCcH
Confidence 5577889999999999999999999999999888888888875544323322222223344444445555544444
No 182
>PRK05588 histidinol-phosphatase; Provisional
Probab=29.81 E-value=3.8e+02 Score=23.46 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=46.1
Q ss_pred chHHHHHHHHHHcCCCEEeCCCCCC-----C---HHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHH
Q 041263 33 GEVGEAVIAAVKAGYRHIDCAHVYD-----N---EKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSL 104 (318)
Q Consensus 33 ~~~~~~l~~Al~~Gi~~~DtA~~Yg-----s---E~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL 104 (318)
....+.+++|.+.|+..+ .+++.. . ..-+-..++.. .. ....+|++.--++ +.++ ....+++.|
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i-~~--~~~~~I~~GiE~~---~~~~-~~~~~~~~l 87 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKY-SK--YRNNKLLLGIELG---MEKD-LIEENKELI 87 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHH-HH--HhcCCcceEEEec---ccCC-CHHHHHHHH
Confidence 457899999999999998 666631 0 00111222211 00 1123444444442 3333 456677788
Q ss_pred HHhCCCccceEeecCCC
Q 041263 105 EHLQLDYIDLYLIHWPF 121 (318)
Q Consensus 105 ~~Lg~d~iDl~~lH~p~ 121 (318)
++...|++ +.-+|+..
T Consensus 88 ~~~~~D~v-igSvH~~~ 103 (255)
T PRK05588 88 NKYEFDYV-IGSIHLVD 103 (255)
T ss_pred hhCCCCeE-EEeEEeeC
Confidence 88887776 78889864
No 183
>COG4077 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.73 E-value=1.4e+02 Score=23.82 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=60.0
Q ss_pred CCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCe
Q 041263 77 RDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKA 156 (318)
Q Consensus 77 R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~i 156 (318)
-+++.|+--....+.+.+.....++.|++++++..+|..-.... ..+.+.=+...+.++.++=
T Consensus 33 ~~e~LiVrGmsRed~d~Dd~~~el~s~ie~~~v~~ld~es~Eg~-----------------elI~e~De~vr~~vei~te 95 (156)
T COG4077 33 TDEMLIVRGMSREDMDADDEEVELYSSIEDYLVKKLDKESFEGV-----------------ELIKEIDEFVRRIVEILTE 95 (156)
T ss_pred ccceEEEecccccccCcchHHHHHHHHHHHhhHHHhCccCHHHH-----------------HHHHHHHHHHHHHHHhhhc
Confidence 45666666666677888899999999999999988886522211 2233333445566666777
Q ss_pred eEEEeeCCChHHHHHHHHhCCCC
Q 041263 157 RAIGVSNFSTKKLKDLCSYAKVK 179 (318)
Q Consensus 157 r~iGvs~~~~~~l~~~~~~~~~~ 179 (318)
.-|+...+..+.+.+-++..++.
T Consensus 96 ~~i~~d~~GfeRlKeslE~~gc~ 118 (156)
T COG4077 96 NPIYPDTFGFERLKESLEMIGCE 118 (156)
T ss_pred CCCccCcchHHHHHHHHHHcCce
Confidence 77888888888888877776643
No 184
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=29.67 E-value=2e+02 Score=22.72 Aligned_cols=63 Identities=8% Similarity=0.007 Sum_probs=46.3
Q ss_pred CCCceEEEeccCCCCCCCChHHHHHHHHHHHhCC----CccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 041263 76 KRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQL----DYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLY 151 (318)
Q Consensus 76 ~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~----d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 151 (318)
+|=.+.|+-|++. ......+++.+.++++.+.. ...|++++-.+...+ .+..++-+.|..+.
T Consensus 47 ~RvG~~VSKKvG~-AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~-------------~~~~~l~~~L~~~l 112 (129)
T PRK01313 47 PRVGFTVTKKNGN-AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALN-------------APFSQLTEELSRRI 112 (129)
T ss_pred cEEEEEEecccCc-chHHHHHHHHHHHHHHHhchhccCCCceEEEEECccccc-------------CCHHHHHHHHHHHH
Confidence 5777888888863 34567899999999997754 458999999886543 55667777777665
Q ss_pred H
Q 041263 152 D 152 (318)
Q Consensus 152 ~ 152 (318)
+
T Consensus 113 ~ 113 (129)
T PRK01313 113 E 113 (129)
T ss_pred H
Confidence 5
No 185
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=29.47 E-value=4.1e+02 Score=23.64 Aligned_cols=98 Identities=19% Similarity=0.160 Sum_probs=59.5
Q ss_pred HHHHHHHHH--HhCCCccceEee-cCCCCCCCCCCCCCCCCCCCCCHHH----HHHHHHHHHHcCCeeEEEeeCCChHHH
Q 041263 97 PKALSRSLE--HLQLDYIDLYLI-HWPFRTKPETRGFEPDIMLPLCLPE----TWAAMEKLYDSGKARAIGVSNFSTKKL 169 (318)
Q Consensus 97 ~~~ve~SL~--~Lg~d~iDl~~l-H~p~~~~~~~~~~~~~~~~~~~~~~----~~~~L~~l~~~G~ir~iGvs~~~~~~l 169 (318)
.+.+++..+ +-|.+.||+=.- -+|.... .+.++ +...++.+++.-.+- |.+-++.++.+
T Consensus 24 ~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~-------------i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~ 89 (257)
T cd00739 24 DKAVAHAEKMIAEGADIIDIGGESTRPGADP-------------VSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVA 89 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCC-------------CCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHH
Confidence 344444333 458899998632 2333211 22233 334456666653444 88999999999
Q ss_pred HHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecC
Q 041263 170 KDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 170 ~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~p 212 (318)
+++++.+ ...+|-+ +....+.++++.++++|..++.+..
T Consensus 90 e~al~~G--~~iINdi--sg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 90 RAALEAG--ADIINDV--SGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHhC--CCEEEeC--CCCCCChHHHHHHHHcCCCEEEECC
Confidence 9999874 2233332 3332236899999999999999643
No 186
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=29.31 E-value=2.9e+02 Score=24.01 Aligned_cols=68 Identities=16% Similarity=0.267 Sum_probs=41.0
Q ss_pred CCEEeC-CCCCC--CHHHHHHHHHhhhhcCCcCCCceEEEeccCCC---C--C--CCChHHHHHHHHHHHhCCCccceEe
Q 041263 47 YRHIDC-AHVYD--NEKEVGAALKQFFSTGVVKRDEMFITSKIWCC---D--L--APEDVPKALSRSLEHLQLDYIDLYL 116 (318)
Q Consensus 47 i~~~Dt-A~~Yg--sE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~---~--~--~~~~i~~~ve~SL~~Lg~d~iDl~~ 116 (318)
.+.++. +..|+ +...+.++.++ ..+++..+.|++.. . + ..+.+.+.+-+.++-|| +.+..++
T Consensus 19 F~~VEvn~TFY~~P~~~t~~~W~~~-------~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~iL 90 (230)
T PF01904_consen 19 FNTVEVNSTFYRIPSPETVARWREQ-------TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPIL 90 (230)
T ss_dssp -SEEEE-HHCCSSS-HHHHHHHHCT-------S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEEE
T ss_pred CCeEEECcccCCCCCHHHHHHHHhh-------CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEEE
Confidence 566655 45677 78888888766 36899999999642 1 1 12344366666888998 8899999
Q ss_pred ecCCCC
Q 041263 117 IHWPFR 122 (318)
Q Consensus 117 lH~p~~ 122 (318)
+.-|-.
T Consensus 91 ~Q~Pps 96 (230)
T PF01904_consen 91 FQFPPS 96 (230)
T ss_dssp EE--TT
T ss_pred EEcCCC
Confidence 998754
No 187
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.26 E-value=3.9e+02 Score=24.98 Aligned_cols=78 Identities=23% Similarity=0.197 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHcC--C--eeEEEee--CCChHHHHHHHHhCC-CCCeeEEeeecCCCC------C----hHHHHHH
Q 041263 138 LCLPETWAAMEKLYDSG--K--ARAIGVS--NFSTKKLKDLCSYAK-VKPAVNQVECHPVWQ------Q----PALHEYC 200 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G--~--ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~----~~l~~~~ 200 (318)
.+++++++++.+....+ + ++++=+. |.+.+++.++.+... .+..++-++||++.. . .......
T Consensus 231 ~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L 310 (349)
T PRK14463 231 YPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYL 310 (349)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHH
Confidence 45678888888777654 2 3445454 444677777766553 345677788888642 1 2345567
Q ss_pred HhcCcEEEEecCCCC
Q 041263 201 KSSGVHLTAYSPLGS 215 (318)
Q Consensus 201 ~~~gi~v~a~~pl~~ 215 (318)
+++|+.+......|.
T Consensus 311 ~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 311 LDKHVTVITRSSRGS 325 (349)
T ss_pred HHCCceEEEeCCCCc
Confidence 888999999887754
No 188
>PLN02444 HMP-P synthase
Probab=29.25 E-value=6.1e+02 Score=25.58 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=54.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHH
Q 041263 90 DLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKL 169 (318)
Q Consensus 90 ~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l 169 (318)
+++.+.+...+++..+ +-+|.+-+|.- -..+.++.++ + |-.|+-+-...-+
T Consensus 296 ~lt~d~~~d~ieeQae----qGVDfmTIH~G---------------------v~~~~v~~~~--~--R~tgIVSRGGSi~ 346 (642)
T PLN02444 296 NLTWEVFRETLIEQAE----QGVDYFTIHAG---------------------VLLRYIPLTA--K--RMTGIVSRGGSIH 346 (642)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEChh---------------------hHHHHHHHHh--C--cccCceeCCcHHH
Confidence 4556666666666554 34777888862 1234444444 3 6667766565555
Q ss_pred HHHHHhCCCCCeeEEeeecCCCCC-hHHHHHHHhcCcEEEEecCCCCCC
Q 041263 170 KDLCSYAKVKPAVNQVECHPVWQQ-PALHEYCKSSGVHLTAYSPLGSPG 217 (318)
Q Consensus 170 ~~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl~~g~ 217 (318)
...+.... .-|++..+ .++++.|++++|.+.----|.-|.
T Consensus 347 a~Wml~~~--------kENPlYe~FD~ileI~k~YDVtlSLGDGLRPG~ 387 (642)
T PLN02444 347 AKWCLAYH--------KENFAYEHWDDILDICNQYDIALSIGDGLRPGS 387 (642)
T ss_pred HHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeeeccCCcCCCc
Confidence 54443322 23555555 679999999999887665554444
No 189
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=29.19 E-value=3.8e+02 Score=23.22 Aligned_cols=132 Identities=11% Similarity=0.018 Sum_probs=64.2
Q ss_pred CccCccccccccCCcchHHHHHHHHHHcCCCEEeCCCCCC-CHHHHHHHHHhhhhcCCcCCCc--------------eEE
Q 041263 18 AKIPSVGLGTWKAPPGEVGEAVIAAVKAGYRHIDCAHVYD-NEKEVGAALKQFFSTGVVKRDE--------------MFI 82 (318)
Q Consensus 18 ~~vs~lglG~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-sE~~lG~al~~~~~~~~~~R~~--------------~~i 82 (318)
..+|-++-|..+ +.++ +..+++.|+..+..+...- +-..+.+..+.+ ..+. ..|
T Consensus 70 ~~~pv~~~GGI~-s~~d----~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~------~~~~i~~~ld~k~~~~~~~~v 138 (243)
T cd04731 70 VFIPLTVGGGIR-SLED----ARRLLRAGADKVSINSAAVENPELIREIAKRF------GSQCVVVSIDAKRRGDGGYEV 138 (243)
T ss_pred CCCCEEEeCCCC-CHHH----HHHHHHcCCceEEECchhhhChHHHHHHHHHc------CCCCEEEEEEeeecCCCceEE
Confidence 345555444433 2233 3444567888887765543 445555555543 2222 334
Q ss_pred EeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEee
Q 041263 83 TSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVS 162 (318)
Q Consensus 83 ~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs 162 (318)
.++.|.... ..... .+-+.++.+| +|.+.+|..+...... .. -|+.+.++++.-.+.-|...
T Consensus 139 ~~~~~~~~~-~~~~~-~~~~~l~~~G---~d~i~v~~i~~~g~~~----------g~---~~~~i~~i~~~~~~pvia~G 200 (243)
T cd04731 139 YTHGGRKPT-GLDAV-EWAKEVEELG---AGEILLTSMDRDGTKK----------GY---DLELIRAVSSAVNIPVIASG 200 (243)
T ss_pred EEcCCceec-CCCHH-HHHHHHHHCC---CCEEEEeccCCCCCCC----------CC---CHHHHHHHHhhCCCCEEEeC
Confidence 444443322 12221 2223445556 5667777654321110 11 24555666555455555555
Q ss_pred CC-ChHHHHHHHHhCCC
Q 041263 163 NF-STKKLKDLCSYAKV 178 (318)
Q Consensus 163 ~~-~~~~l~~~~~~~~~ 178 (318)
.. +++.+.++++..+.
T Consensus 201 Gi~~~~di~~~l~~~g~ 217 (243)
T cd04731 201 GAGKPEHFVEAFEEGGA 217 (243)
T ss_pred CCCCHHHHHHHHHhCCC
Confidence 44 46677776665433
No 190
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=29.10 E-value=3.7e+02 Score=23.03 Aligned_cols=123 Identities=11% Similarity=0.070 Sum_probs=63.5
Q ss_pred ccCCcchHHHHHHHHHHcCCCEEeCCCCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHh
Q 041263 28 WKAPPGEVGEAVIAAVKAGYRHIDCAHVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHL 107 (318)
Q Consensus 28 ~~~~~~~~~~~l~~Al~~Gi~~~DtA~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~L 107 (318)
++.++++-.+++..+++.|+.++|.--....+. +....... ..+.++.++.--+....+.+.+.+.+++ .+.+
T Consensus 70 ~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~-~~~~~~~~-----~~~~~iI~S~H~f~~tp~~~~l~~~~~~-~~~~ 142 (224)
T PF01487_consen 70 FQGSEEEYLELLERAIRLGPDYIDIELDLFPDD-LKSRLAAR-----KGGTKIILSYHDFEKTPSWEELIELLEE-MQEL 142 (224)
T ss_dssp BSS-HHHHHHHHHHHHHHTSSEEEEEGGCCHHH-HHHHHHHH-----HTTSEEEEEEEESS---THHHHHHHHHH-HHHT
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEEcccchhH-HHHHHHHh-----hCCCeEEEEeccCCCCCCHHHHHHHHHH-HHhc
Confidence 445667778999999999999999754432222 22222211 1456666666532221222234444443 3367
Q ss_pred CCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHH
Q 041263 108 QLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLC 173 (318)
Q Consensus 108 g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (318)
|.|.+=+.....-. .+....++.+.++++.-...-|+++.-....+..++
T Consensus 143 gadivKia~~~~~~----------------~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~ 192 (224)
T PF01487_consen 143 GADIVKIAVMANSP----------------EDVLRLLRFTKEFREEPDIPVIAISMGELGRISRIL 192 (224)
T ss_dssp T-SEEEEEEE-SSH----------------HHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHHC
T ss_pred CCCeEEEEeccCCH----------------HHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHHH
Confidence 76655554433210 233455666666665545556666655554554443
No 191
>PRK10060 RNase II stability modulator; Provisional
Probab=29.05 E-value=6.3e+02 Score=25.74 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=75.5
Q ss_pred ceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeE
Q 041263 79 EMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARA 158 (318)
Q Consensus 79 ~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~ 158 (318)
.+.|+--+....+....+...+.+.|++.++. ...+.+--.+... -.+...+.+.+..|++.|- .
T Consensus 492 ~~~i~vNls~~~l~~~~~~~~l~~~l~~~~~~-~~~l~lEitE~~~------------~~~~~~~~~~l~~L~~~G~--~ 556 (663)
T PRK10060 492 NLRVAVNVSARQLADQTIFTALKQALQELNFE-YCPIDVELTESCL------------IENEELALSVIQQFSQLGA--Q 556 (663)
T ss_pred CeEEEEEcCHHHhCCCcHHHHHHHHHHHHCcC-cceEEEEECCchh------------hcCHHHHHHHHHHHHHCCC--E
Confidence 45566666655565678888999999998875 3444443322211 0445678899999999998 7
Q ss_pred EEeeCCC--hHHHHHHHHhCCCCCeeEEeeecCCCC---C-------hHHHHHHHhcCcEEEEec
Q 041263 159 IGVSNFS--TKKLKDLCSYAKVKPAVNQVECHPVWQ---Q-------PALHEYCKSSGVHLTAYS 211 (318)
Q Consensus 159 iGvs~~~--~~~l~~~~~~~~~~~~~~q~~~~~~~~---~-------~~l~~~~~~~gi~v~a~~ 211 (318)
|++.+|. ...+..+.. .+++.+-+.-++... + ..++..|+..|+.++|-.
T Consensus 557 ialDdfGtg~ssl~~L~~---l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeG 618 (663)
T PRK10060 557 VHLDDFGTGYSSLSQLAR---FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEG 618 (663)
T ss_pred EEEECCCCchhhHHHHHh---CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEec
Confidence 8888877 344444433 355666555433321 1 467899999999999874
No 192
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.00 E-value=4.8e+02 Score=25.26 Aligned_cols=66 Identities=11% Similarity=0.159 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEeeC-----C----ChHHHHHHHHhC-CCCCeeEEeeecCCCC---ChHHHHHHHhc
Q 041263 137 PLCLPETWAAMEKLYDSGKARAIGVSN-----F----STKKLKDLCSYA-KVKPAVNQVECHPVWQ---QPALHEYCKSS 203 (318)
Q Consensus 137 ~~~~~~~~~~L~~l~~~G~ir~iGvs~-----~----~~~~l~~~~~~~-~~~~~~~q~~~~~~~~---~~~l~~~~~~~ 203 (318)
..+.+.+++.++.|++.| ++.|-+.+ | ....+.++++.. .... ...+.+....+ ..++++..++.
T Consensus 177 sr~~e~Vv~Ei~~l~~~G-~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~~-~~rir~~~~~p~~l~~ell~~~~~~ 254 (445)
T PRK14340 177 SHPFASVLDEVRALAEAG-YREITLLGQNVNSYSDPEAGADFAGLLDAVSRAAP-EMRIRFTTSHPKDISESLVRTIAAR 254 (445)
T ss_pred CCCHHHHHHHHHHHHHCC-CeEEEEeecccchhhccCCCchHHHHHHHHhhcCC-CcEEEEccCChhhcCHHHHHHHHhC
Confidence 367899999999999987 45554421 1 011233444332 1111 12344433333 36888888775
Q ss_pred C
Q 041263 204 G 204 (318)
Q Consensus 204 g 204 (318)
+
T Consensus 255 ~ 255 (445)
T PRK14340 255 P 255 (445)
T ss_pred C
Confidence 3
No 193
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=28.90 E-value=1.6e+02 Score=23.29 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEee
Q 041263 97 PKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVS 162 (318)
Q Consensus 97 ~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs 162 (318)
+..+++.|+.+....+|.++++..++.. .+..+....++.|.+...|+-+-+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~-------------R~~~d~~~~~~~l~~~~gv~l~~~~ 106 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLG-------------RNYLKVGLYMEILFPKKGVRFIAIN 106 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhc-------------cCHHHHHHHHHHHHhhcCcEEEEec
Confidence 5577777777777789999999888764 5567777888888877344545443
No 194
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=28.87 E-value=1.4e+02 Score=28.24 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCC--hHHHHHHHhcCcEEEEecCCCCCCCCC
Q 041263 143 TWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQ--PALHEYCKSSGVHLTAYSPLGSPGSWV 220 (318)
Q Consensus 143 ~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~pl~~g~l~~ 220 (318)
-..++.+|.+.|.+.+|-.-...--.+..+...-...+. --|.....+ ..+++.|+++||.|+.-+ |++.+
T Consensus 11 ~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~Na----Gg~np 83 (362)
T PF07287_consen 11 RPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITNA----GGLNP 83 (362)
T ss_pred cHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEeC----CCCCH
Confidence 356788888999999886544332122211111111111 011111111 468999999999998874 33222
Q ss_pred cccccchHHHHHHHHHhCCC
Q 041263 221 KGEILKEAILQEIAGELNKS 240 (318)
Q Consensus 221 ~~~~~~~~~l~~la~~~~~s 240 (318)
. -..+.+++++++.|.+
T Consensus 84 ~---~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 84 A---GCADIVREIARELGLS 100 (362)
T ss_pred H---HHHHHHHHHHHhcCCC
Confidence 1 1346788888887765
No 195
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=28.66 E-value=64 Score=24.83 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.4
Q ss_pred CCcchHHHHHHHHHHcCCCEEeCCCCCC
Q 041263 30 APPGEVGEAVIAAVKAGYRHIDCAHVYD 57 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg 57 (318)
.+.+.+.+....+++.|++.||.+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 5667788899999999999999999984
No 196
>TIGR03586 PseI pseudaminic acid synthase.
Probab=28.66 E-value=4.8e+02 Score=24.22 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=61.8
Q ss_pred CCcchHHHHHHHHHHcCCCEEeCCCCCCC---------------------HHHHHHHHHhhhhcCCcCCCceEEEeccCC
Q 041263 30 APPGEVGEAVIAAVKAGYRHIDCAHVYDN---------------------EKEVGAALKQFFSTGVVKRDEMFITSKIWC 88 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Ygs---------------------E~~lG~al~~~~~~~~~~R~~~~i~tK~~~ 88 (318)
.+.++..++.+.+-+.|+.++=|.-.-.+ -.+| +.+.+ ....++++|-.
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL-~~va~-------~gkPvilstG~-- 143 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLI-RYVAK-------TGKPIIMSTGI-- 143 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHH-HHHHh-------cCCcEEEECCC--
Confidence 45566667888888999998865422111 1211 11121 24456666655
Q ss_pred CCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHcCCeeEEEeeCCChH
Q 041263 89 CDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPE-TWAAMEKLYDSGKARAIGVSNFSTK 167 (318)
Q Consensus 89 ~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~l~~~G~ir~iGvs~~~~~ 167 (318)
.+.+.+..+++-.. +-| .-++.++|+...+. .+... -+.++..|++.-. .-||+|+|+..
T Consensus 144 --~t~~Ei~~Av~~i~-~~g--~~~i~LlhC~s~YP-------------~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G 204 (327)
T TIGR03586 144 --ATLEEIQEAVEACR-EAG--CKDLVLLKCTSSYP-------------APLEDANLRTIPDLAERFN-VPVGLSDHTLG 204 (327)
T ss_pred --CCHHHHHHHHHHHH-HCC--CCcEEEEecCCCCC-------------CCcccCCHHHHHHHHHHhC-CCEEeeCCCCc
Confidence 24566777766554 223 24799999865431 11111 1345555554433 36999999966
Q ss_pred HH
Q 041263 168 KL 169 (318)
Q Consensus 168 ~l 169 (318)
..
T Consensus 205 ~~ 206 (327)
T TIGR03586 205 IL 206 (327)
T ss_pred hH
Confidence 43
No 197
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=28.46 E-value=5.1e+02 Score=24.88 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHc------CCeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCC---CChHHHHHHHhcCcEEEEecC
Q 041263 142 ETWAAMEKLYDS------GKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVW---QQPALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 142 ~~~~~L~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~v~a~~p 212 (318)
+-++.|.+|++. ..=-..+=|.++++.+..+++.... +++|+..+-.- ...++..+|+.+||.+...+.
T Consensus 279 ~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~--d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~ 356 (408)
T TIGR01502 279 AQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAG--HMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGT 356 (408)
T ss_pred hhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCC--CEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCC
Confidence 346677777765 3333455667778888888776443 77777755432 225788899999999998766
Q ss_pred C
Q 041263 213 L 213 (318)
Q Consensus 213 l 213 (318)
.
T Consensus 357 ~ 357 (408)
T TIGR01502 357 C 357 (408)
T ss_pred C
Confidence 5
No 198
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=28.45 E-value=5.8e+02 Score=25.13 Aligned_cols=89 Identities=15% Similarity=0.089 Sum_probs=62.1
Q ss_pred CCcchHHHHHHHHHHcCCCEEeCCCCCC--CHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHh
Q 041263 30 APPGEVGEAVIAAVKAGYRHIDCAHVYD--NEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHL 107 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg--sE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~L 107 (318)
.+.+.+.+++.+...+|.+.|--++-=| +....|+.++.. ..+...|+++.|++.+.. ...+.-+--.+=-.-
T Consensus 201 se~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~-~tn~~~~e~v~Is~HcHN----D~G~a~Ant~~g~~A 275 (560)
T KOG2367|consen 201 SELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYL-KTNTPGREKVCISTHCHN----DLGCATANTELGLLA 275 (560)
T ss_pred CcHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHH-HccCCCceeEEEEEeecC----CccHHHHHHHHHhhc
Confidence 4567788999999999999998777777 577778777654 455556999999998742 122322323333344
Q ss_pred CCCccceEeecCCCCC
Q 041263 108 QLDYIDLYLIHWPFRT 123 (318)
Q Consensus 108 g~d~iDl~~lH~p~~~ 123 (318)
|-++||.-++-.-++.
T Consensus 276 GA~~VE~~i~GiGERt 291 (560)
T KOG2367|consen 276 GARQVEVTINGIGERT 291 (560)
T ss_pred CcceEEEEeecccccc
Confidence 7789999888765554
No 199
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=28.44 E-value=4.7e+02 Score=24.05 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=49.2
Q ss_pred CCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 041263 76 KRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGK 155 (318)
Q Consensus 76 ~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ 155 (318)
.++.+.++.|.....+ -..+.+.+++..+++| +++.+ ..|.. .+.....+.++.+.++|
T Consensus 22 ~~~~i~~v~k~~~~pf-~~~~~~Gi~~aa~~~G---~~v~~-~~~~~---------------~d~~~q~~~i~~li~~~- 80 (336)
T PRK15408 22 AAERIAFIPKLVGVGF-FTSGGNGAKEAGKELG---VDVTY-DGPTE---------------PSVSGQVQLINNFVNQG- 80 (336)
T ss_pred CCcEEEEEECCCCCHH-HHHHHHHHHHHHHHhC---CEEEE-ECCCC---------------CCHHHHHHHHHHHHHcC-
Confidence 4678888998754333 3478889999999998 44443 23322 22345568888888876
Q ss_pred eeEEEeeCCChHHHH
Q 041263 156 ARAIGVSNFSTKKLK 170 (318)
Q Consensus 156 ir~iGvs~~~~~~l~ 170 (318)
+..|-++..++..+.
T Consensus 81 vdgIiv~~~d~~al~ 95 (336)
T PRK15408 81 YNAIIVSAVSPDGLC 95 (336)
T ss_pred CCEEEEecCCHHHHH
Confidence 778888876655333
No 200
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=28.24 E-value=1.2e+02 Score=25.90 Aligned_cols=77 Identities=17% Similarity=0.088 Sum_probs=44.0
Q ss_pred cccccCCcchHHHHHHHHHHcCCCEEeCCCCCC-CHHHHH--HHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHH
Q 041263 25 LGTWKAPPGEVGEAVIAAVKAGYRHIDCAHVYD-NEKEVG--AALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALS 101 (318)
Q Consensus 25 lG~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-sE~~lG--~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve 101 (318)
+.+...++++.....+.|.++|..|+-|+..|. .-..++ +.+++.+ +.+ +-.|+...-.+.+...+-++
T Consensus 123 ~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~------~~~--v~ik~aGGikt~~~~l~~~~ 194 (203)
T cd00959 123 LETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAV------GGR--VGVKAAGGIRTLEDALAMIE 194 (203)
T ss_pred EecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh------CCC--ceEEEeCCCCCHHHHHHHHH
Confidence 333334567788889999999999999998885 111122 3344431 121 23333211124555666666
Q ss_pred HHHHHhCC
Q 041263 102 RSLEHLQL 109 (318)
Q Consensus 102 ~SL~~Lg~ 109 (318)
....|+|+
T Consensus 195 ~g~~riG~ 202 (203)
T cd00959 195 AGATRIGT 202 (203)
T ss_pred hChhhccC
Confidence 65666665
No 201
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=28.11 E-value=2.4e+02 Score=29.62 Aligned_cols=90 Identities=13% Similarity=0.075 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc--CCeeEEEeeCCChHHHHH
Q 041263 94 EDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDS--GKARAIGVSNFSTKKLKD 171 (318)
Q Consensus 94 ~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--G~ir~iGvs~~~~~~l~~ 171 (318)
+.+++-++...........-+|+|+..+.. + .+.+++|.+..++ ..+++|-+++.....+..
T Consensus 102 DdIReLIe~a~~~P~~gr~KVIIIDEah~L---------------T-~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 102 DEMAALLERAVYAPVDARFKVYMIDEVHML---------------T-NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165 (830)
T ss_pred HHHHHHHHHHHhccccCCceEEEEeChhhC---------------C-HHHHHHHHHHHHhcCCCeEEEEEECChhhccch
Confidence 345555544332222234567888766532 2 4567888777777 589999999975444444
Q ss_pred HHHhCCCCCeeEEeeecCCCCC---hHHHHHHHhcCc
Q 041263 172 LCSYAKVKPAVNQVECHPVWQQ---PALHEYCKSSGV 205 (318)
Q Consensus 172 ~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi 205 (318)
++. .+.++.|..+... .-+...|++.||
T Consensus 166 IrS------RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI 196 (830)
T PRK07003 166 VLS------RCLQFNLKQMPAGHIVSHLERILGEERI 196 (830)
T ss_pred hhh------heEEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 443 3456666666544 123444555544
No 202
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=28.08 E-value=4.3e+02 Score=23.53 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHcCCee-EEEeeCCC--hH----HHHHHHHhCC-CCCeeEEeeecCCCCChHHHHHHHhcCcEEEE
Q 041263 138 LCLPETWAAMEKLYDSGKAR-AIGVSNFS--TK----KLKDLCSYAK-VKPAVNQVECHPVWQQPALHEYCKSSGVHLTA 209 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir-~iGvs~~~--~~----~l~~~~~~~~-~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a 209 (318)
.+.+++++.++++++.|.-+ ++..+.+. .. .+.++.+... ... .+..+......+.++..++.|+..+.
T Consensus 62 ~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i---~~~~~~g~~~~e~l~~Lk~aG~~~v~ 138 (296)
T TIGR00433 62 KKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGL---KTCATLGLLDPEQAKRLKDAGLDYYN 138 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCC---eEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 45678888998888888533 23333332 22 2333333221 111 22234333457889999999988777
Q ss_pred ec
Q 041263 210 YS 211 (318)
Q Consensus 210 ~~ 211 (318)
.+
T Consensus 139 i~ 140 (296)
T TIGR00433 139 HN 140 (296)
T ss_pred Ec
Confidence 65
No 203
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=27.97 E-value=2.1e+02 Score=21.81 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=24.7
Q ss_pred ChHHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEec
Q 041263 165 STKKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYS 211 (318)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~ 211 (318)
+.+.+.++.+..+ ++.+.--|..+..+.++.+.|.++|+.++.-+
T Consensus 62 ~~e~I~~ia~~~g--~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 62 NIEAIIDIARKEG--ADAIHPGYGFLSENAEFAEACEDAGIIFIGPS 106 (110)
T ss_dssp SHHHHHHHHHHTT--ESEEESTSSTTTTHHHHHHHHHHTT-EESSS-
T ss_pred cHHHHhhHhhhhc--CcccccccchhHHHHHHHHHHHHCCCEEECcC
Confidence 3555555555443 34455555555555667777777777666543
No 204
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=27.96 E-value=1.9e+02 Score=26.04 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHh
Q 041263 138 LCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSY 175 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 175 (318)
.+.+-.-++..+++++|. .|=+|+|..++++++++.
T Consensus 164 VN~elLk~~I~~lk~~Ga--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 164 VNVELLKDAIFELKEEGA--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred hhHHHHHHHHHHHHhcCC--EEEEecchHHHHHHHhhh
Confidence 444555688899999999 889999999999999885
No 205
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.82 E-value=1.2e+02 Score=23.05 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCCCEEeCCCCCC--CHHHHHHHHHhhhhcCCcCCCceEEEecc-CCC----------------CC-CCC
Q 041263 35 VGEAVIAAVKAGYRHIDCAHVYD--NEKEVGAALKQFFSTGVVKRDEMFITSKI-WCC----------------DL-APE 94 (318)
Q Consensus 35 ~~~~l~~Al~~Gi~~~DtA~~Yg--sE~~lG~al~~~~~~~~~~R~~~~i~tK~-~~~----------------~~-~~~ 94 (318)
..+..--.+++|--|+-|-..|- .|..+---|-+ ..++++|.+|+ |.. +. .-.
T Consensus 22 LYsaYMpfl~nGglFVpTnk~y~iG~evfl~l~lld-------~pekl~vagkVaWitP~gt~sr~~GiGv~f~d~e~g~ 94 (117)
T COG3215 22 LYSAYMPFLENGGLFVPTNKVYSIGEEVFLLLELLD-------FPEKLPVAGKVAWITPVGTQSRPAGIGVQFTDGENGL 94 (117)
T ss_pred HHHHHhHHHhcCcEEcccCCccccchhhhhhhhhcC-------chhhccccceEEEEccCCCCCCCCceeeeccCCCchh
Confidence 44555566899999999999995 66666444443 35689999998 211 11 123
Q ss_pred hHHHHHHHHHHH
Q 041263 95 DVPKALSRSLEH 106 (318)
Q Consensus 95 ~i~~~ve~SL~~ 106 (318)
.++.++|.-|..
T Consensus 95 ~vr~~IE~~Lg~ 106 (117)
T COG3215 95 KVRNQIETLLGG 106 (117)
T ss_pred hHHHHHHHHHHh
Confidence 688889888763
No 206
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=27.51 E-value=4.9e+02 Score=23.99 Aligned_cols=148 Identities=14% Similarity=0.154 Sum_probs=82.5
Q ss_pred CCcchHHHHHHHHHHcCCCEEeCCCCCC---C----HHHH--HHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHH
Q 041263 30 APPGEVGEAVIAAVKAGYRHIDCAHVYD---N----EKEV--GAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKAL 100 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg---s----E~~l--G~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~v 100 (318)
.+.++..+.++.+++.|++.|-.--..+ . ++-+ =+++++.+ .+++-|..=.. ..++++. .
T Consensus 119 ~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~------g~~~~l~vDan-~~~~~~~----A 187 (341)
T cd03327 119 TDLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAV------GYDVDLMLDCY-MSWNLNY----A 187 (341)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHh------CCCCcEEEECC-CCCCHHH----H
Confidence 3556666777788899999886532111 0 1111 13444431 22333332221 1222222 2
Q ss_pred HHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCee-EEEeeCCChHHHHHHHHhCCCC
Q 041263 101 SRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKAR-AIGVSNFSTKKLKDLCSYAKVK 179 (318)
Q Consensus 101 e~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~ 179 (318)
.+-+++|. .+++.++-.|-.. +-++.+.+|++...+. +.|=+.++...+..+++...
T Consensus 188 ~~~~~~l~--~~~~~~iEeP~~~------------------~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a-- 245 (341)
T cd03327 188 IKMARALE--KYELRWIEEPLIP------------------DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRA-- 245 (341)
T ss_pred HHHHHHhh--hcCCccccCCCCc------------------cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCC--
Confidence 22333442 3456666655432 2356788888877666 56667778888888887643
Q ss_pred CeeEEeeecCCC---CChHHHHHHHhcCcEEEEe
Q 041263 180 PAVNQVECHPVW---QQPALHEYCKSSGVHLTAY 210 (318)
Q Consensus 180 ~~~~q~~~~~~~---~~~~l~~~~~~~gi~v~a~ 210 (318)
.+++|......- .-..+...|+.+|+.+..+
T Consensus 246 ~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h 279 (341)
T cd03327 246 VDILQPDVNWVGGITELKKIAALAEAYGVPVVPH 279 (341)
T ss_pred CCEEecCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 477776654432 2257888899999987754
No 207
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.41 E-value=5.8e+02 Score=24.79 Aligned_cols=66 Identities=20% Similarity=0.332 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEeeC-----C-----ChHHHHHHHHhCCCCCeeEEee---ecCCCCChHHHHHHHhcC
Q 041263 138 LCLPETWAAMEKLYDSGKARAIGVSN-----F-----STKKLKDLCSYAKVKPAVNQVE---CHPVWQQPALHEYCKSSG 204 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iGvs~-----~-----~~~~l~~~~~~~~~~~~~~q~~---~~~~~~~~~l~~~~~~~g 204 (318)
.+.+++.+.++.+.+.| ++.|-+.. | ....+.++++.....+....+. .++..-..++++..++.+
T Consensus 184 r~~e~Il~ei~~l~~~G-~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~ 262 (459)
T PRK14338 184 RPLAEIVEEVRRIAARG-AKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARLP 262 (459)
T ss_pred CCHHHHHHHHHHHHHCC-CeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHhccc
Confidence 67899999999999998 45554432 1 1223555544432111111122 233333468888887754
No 208
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=27.22 E-value=3.6e+02 Score=26.96 Aligned_cols=73 Identities=8% Similarity=-0.030 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHc-CCeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCC
Q 041263 138 LCLPETWAAMEKLYDS-GKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 213 (318)
.+-.+++++|...++- ++|.-||+.+.. ..+..+.+..+. .+.|+.|.--..-...+..+++.|+.++.-..+
T Consensus 91 ~s~~Dil~al~~a~~~~~~iavv~~~~~~-~~~~~~~~~l~~--~i~~~~~~~~~e~~~~v~~lk~~G~~~vvG~~~ 164 (538)
T PRK15424 91 PSGFDVMQALARARKLTSSIGVVTYQETI-PALVAFQKTFNL--RIEQRSYVTEEDARGQINELKANGIEAVVGAGL 164 (538)
T ss_pred CCHhHHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHHhCC--ceEEEEecCHHHHHHHHHHHHHCCCCEEEcCch
Confidence 3345688888888764 678888887755 344555555444 455555433333357889999999998886543
No 209
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.13 E-value=5.4e+02 Score=24.34 Aligned_cols=142 Identities=13% Similarity=0.133 Sum_probs=73.9
Q ss_pred CHHHHHHHHHhhhhc-C-CcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceE-eecCCCCCCCCCCCCCCCC
Q 041263 58 NEKEVGAALKQFFST-G-VVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLY-LIHWPFRTKPETRGFEPDI 134 (318)
Q Consensus 58 sE~~lG~al~~~~~~-~-~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~-~lH~p~~~~~~~~~~~~~~ 134 (318)
+-..+-++++..... | .+....+.|+|-.. .. .+++.++. ++ +-|. .||.++..........+..
T Consensus 172 N~d~v~~al~~l~~~~g~~i~~r~itVsTsG~-----~~----~i~~l~~~--~d-~~LaiSLha~d~e~R~~lmPin~~ 239 (372)
T PRK11194 172 NLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGV-----VP----ALDKLGDM--ID-VALAISLHAPNDELRDEIVPINKK 239 (372)
T ss_pred CHHHHHHHHHHHhhhhccCcCCCeEEEECCCC-----ch----HHHHHHhc--cC-eEEEeeccCCCHHHHHHhcCCccc
Confidence 455555666654211 1 02233677777541 11 23333322 12 3344 3898765442211100000
Q ss_pred CCCCCHHHHHHHHHHHHHcC-------CeeEEEeeC--CChHHHHHHHHhCC-CCCeeEEeeecCCCC------C----h
Q 041263 135 MLPLCLPETWAAMEKLYDSG-------KARAIGVSN--FSTKKLKDLCSYAK-VKPAVNQVECHPVWQ------Q----P 194 (318)
Q Consensus 135 ~~~~~~~~~~~~L~~l~~~G-------~ir~iGvs~--~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~------~----~ 194 (318)
.++.+.++++.+...+- .||++=+.. .+.++++++.+... .+..++-++||++.. . .
T Consensus 240 ---~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLIPYN~~~~~~~~~ps~e~v~ 316 (372)
T PRK11194 240 ---YNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRID 316 (372)
T ss_pred ---ccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEecCCCCCCCCCCCCCHHHHH
Confidence 34567777766665433 255555554 44777777766543 345778888887642 1 2
Q ss_pred HHHHHHHhcCcEEEEecCCC
Q 041263 195 ALHEYCKSSGVHLTAYSPLG 214 (318)
Q Consensus 195 ~l~~~~~~~gi~v~a~~pl~ 214 (318)
...+..+++|+.+......|
T Consensus 317 ~f~~~L~~~Gi~vtiR~~~G 336 (372)
T PRK11194 317 RFSKVLMEYGFTVIVRKTRG 336 (372)
T ss_pred HHHHHHHHCCCeEEEecCCC
Confidence 34556778899988876554
No 210
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.95 E-value=4.1e+02 Score=25.59 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEeeC--C---Ch----HHHHHHHHhC-CCCCeeEEeee---cCCCCChHHHHHHHhc
Q 041263 137 PLCLPETWAAMEKLYDSGKARAIGVSN--F---ST----KKLKDLCSYA-KVKPAVNQVEC---HPVWQQPALHEYCKSS 203 (318)
Q Consensus 137 ~~~~~~~~~~L~~l~~~G~ir~iGvs~--~---~~----~~l~~~~~~~-~~~~~~~q~~~---~~~~~~~~l~~~~~~~ 203 (318)
..+++.+++.++.+++.| ++.|-+.. + .. ..+.++++.. ..+ ....+.+ ++..-..++++..++.
T Consensus 174 sr~~e~V~~Ei~~l~~~g-~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~-g~~~i~~~~~~p~~l~~ell~~~~~~ 251 (437)
T PRK14331 174 SRRLGSILDEVQWLVDDG-VKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEID-GVERIRFTTGHPRDLDEDIIKAMADI 251 (437)
T ss_pred cCCHHHHHHHHHHHHHCC-CeEEEEeeeccccccCCCCCCCHHHHHHHHhcCC-CccEEEEeccCcccCCHHHHHHHHcC
Confidence 367899999999999987 56666642 1 10 1233443331 111 1112333 2333347888888876
Q ss_pred C
Q 041263 204 G 204 (318)
Q Consensus 204 g 204 (318)
+
T Consensus 252 ~ 252 (437)
T PRK14331 252 P 252 (437)
T ss_pred C
Confidence 4
No 211
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=26.92 E-value=5.9e+02 Score=24.66 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCC-eeEEEeeCCChHHHHHHHHhCCCCCeeE-----EeeecCCCCChHHHHHHHhcCcEEEEe
Q 041263 143 TWAAMEKLYDSGK-ARAIGVSNFSTKKLKDLCSYAKVKPAVN-----QVECHPVWQQPALHEYCKSSGVHLTAY 210 (318)
Q Consensus 143 ~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~~~-----q~~~~~~~~~~~l~~~~~~~gi~v~a~ 210 (318)
+....+.|+++|. ++++.|.+-....++++.+....+...+ ......+.+-+++...|++.||.+.+=
T Consensus 144 v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~D 217 (428)
T KOG1549|consen 144 VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVD 217 (428)
T ss_pred hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEee
Confidence 3455566666663 5566666444444444444433222221 111112222256667777777655544
No 212
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=26.87 E-value=2.4e+02 Score=23.31 Aligned_cols=36 Identities=33% Similarity=0.299 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCC
Q 041263 141 PETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAK 177 (318)
Q Consensus 141 ~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 177 (318)
.++.+.|+.|++.|. +-.-+||.+...+...++..+
T Consensus 95 ~~~~~~L~~L~~~g~-~~~i~Sn~~~~~~~~~l~~~g 130 (198)
T TIGR01428 95 PDVPAGLRALKERGY-RLAILSNGSPAMLKSLVKHAG 130 (198)
T ss_pred CCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHCC
Confidence 467788999998884 445577777777777766554
No 213
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=26.74 E-value=49 Score=30.68 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCC-----eeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCC-hHHHHHHHhcCcEEEEecCC
Q 041263 143 TWAAMEKLYDSGK-----ARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQ-PALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 143 ~~~~L~~l~~~G~-----ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl 213 (318)
+++.|++|+++|. .-|+|.++|.+-..+.+.+.. ......+ +.++ -+.+..++++|-.|+|-++.
T Consensus 188 t~~LL~kLk~kGv~~afvTLHVGaGTF~pV~~~~i~eH~-MH~E~~~-----v~~eta~~i~~~k~~GgRIiaVGTT 258 (348)
T COG0809 188 TEELLEKLKAKGVEIAFVTLHVGAGTFRPVKVENIEEHK-MHSEYYE-----VPQETADAINAAKARGGRIIAVGTT 258 (348)
T ss_pred CHHHHHHHHHCCceEEEEEEEecccccccceeccccccc-cchhhee-----cCHHHHHHHHHHHHcCCeEEEEcch
Confidence 6789999999986 458999999987776553321 1111111 1122 47899999999999998765
No 214
>PRK06256 biotin synthase; Validated
Probab=26.40 E-value=5.1e+02 Score=23.74 Aligned_cols=72 Identities=14% Similarity=0.031 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEE-eeCCCh-----HHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEe
Q 041263 138 LCLPETWAAMEKLYDSGKARAIG-VSNFST-----KKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAY 210 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iG-vs~~~~-----~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~ 210 (318)
.+.+++.+..+++++.|..+.+= .+.+.+ +.+.++++.....+. +.+..+...-..+.++..++.|+..+..
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~-i~~~~~~g~l~~e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETD-LEICACLGLLTEEQAERLKEAGVDRYNH 168 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCC-CcEEecCCcCCHHHHHHHHHhCCCEEec
Confidence 57789999999999998654321 223322 234444443221121 1222333335578889999999876655
No 215
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=26.38 E-value=3.6e+02 Score=22.48 Aligned_cols=10 Identities=40% Similarity=0.644 Sum_probs=4.5
Q ss_pred HHHHHHhhhh
Q 041263 62 VGAALKQFFS 71 (318)
Q Consensus 62 lG~al~~~~~ 71 (318)
++.+|..+|.
T Consensus 15 va~aL~~LFg 24 (168)
T PF08303_consen 15 VALALSNLFG 24 (168)
T ss_pred HHHHHHHHcC
Confidence 4444444443
No 216
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=26.37 E-value=5.3e+02 Score=23.96 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=64.6
Q ss_pred CCcchHHHHHHHHHHcCCCEEeCCCC---------CC------------CHHHHHHHHHhhhhcCCcCCCceEEEeccCC
Q 041263 30 APPGEVGEAVIAAVKAGYRHIDCAHV---------YD------------NEKEVGAALKQFFSTGVVKRDEMFITSKIWC 88 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~DtA~~---------Yg------------sE~~lG~al~~~~~~~~~~R~~~~i~tK~~~ 88 (318)
.+.++...+.+.+-+.|+.+|=|.-. || +-.+| +.+.+ ....++|+|-..
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL-~~~A~-------~gkPvilStGma- 143 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLL-KKIAR-------FGKPVILSTGMA- 143 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHH-HHHHh-------cCCcEEEECCCC-
Confidence 66677888888999999998865422 11 12222 12222 245577777652
Q ss_pred CCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHH
Q 041263 89 CDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKK 168 (318)
Q Consensus 89 ~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~ 168 (318)
+.+.+..+++...+ -|.+.-++.++|+...+... ++ ... +.++..|++.=. .-||+|+|+...
T Consensus 144 ---tl~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP~~-----~~----~~n---L~~I~~Lk~~f~-~pVG~SdHt~G~ 206 (329)
T TIGR03569 144 ---TLEEIEAAVGVLRD-AGTPDSNITLLHCTTEYPAP-----FE----DVN---LNAMDTLKEAFD-LPVGYSDHTLGI 206 (329)
T ss_pred ---CHHHHHHHHHHHHH-cCCCcCcEEEEEECCCCCCC-----cc----cCC---HHHHHHHHHHhC-CCEEECCCCccH
Confidence 45677777776643 34321259999986542210 00 112 344444444322 469999999664
Q ss_pred H
Q 041263 169 L 169 (318)
Q Consensus 169 l 169 (318)
.
T Consensus 207 ~ 207 (329)
T TIGR03569 207 E 207 (329)
T ss_pred H
Confidence 3
No 217
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=26.28 E-value=3.6e+02 Score=23.31 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=45.5
Q ss_pred CCcchHHHHHHHHHHcCCCEEe-CCCCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhC
Q 041263 30 APPGEVGEAVIAAVKAGYRHID-CAHVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQ 108 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~D-tA~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg 108 (318)
.+++++..+=+.|-++|+.++- +|+.--.|++ ++|... ...=+|+.+.++.... .+.+...+.+.|.|.+
T Consensus 132 lPpEEa~~~Rne~~k~gislvpLvaPsTtdeRm--ell~~~------adsFiYvVSrmG~TG~-~~svn~~l~~L~qrvr 202 (268)
T KOG4175|consen 132 LPPEEAETLRNEARKHGISLVPLVAPSTTDERM--ELLVEA------ADSFIYVVSRMGVTGT-RESVNEKLQSLLQRVR 202 (268)
T ss_pred CChHHHHHHHHHHHhcCceEEEeeCCCChHHHH--HHHHHh------hcceEEEEEecccccc-HHHHHHHHHHHHHHHH
Confidence 4667777777788888888774 4444334544 344442 3445788888876543 4567777887777765
No 218
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=26.27 E-value=3.7e+02 Score=22.14 Aligned_cols=87 Identities=10% Similarity=-0.031 Sum_probs=51.9
Q ss_pred CeeEEEeeCCChHHH------HHHHHhC-CCCCeeEEeeecCCCC-------C--------hHHHHHHHhcCcEEEEecC
Q 041263 155 KARAIGVSNFSTKKL------KDLCSYA-KVKPAVNQVECHPVWQ-------Q--------PALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 155 ~ir~iGvs~~~~~~l------~~~~~~~-~~~~~~~q~~~~~~~~-------~--------~~l~~~~~~~gi~v~a~~p 212 (318)
.|.+.|++..+...+ ..++... ..+.+++++-.|=... . ..+++.++++|..++..+|
T Consensus 36 ~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp 115 (198)
T cd01821 36 TVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTP 115 (198)
T ss_pred EEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 677889988876543 2344332 2344555665554332 1 3578889999999988887
Q ss_pred CCCCCCCCcc-----cccchHHHHHHHHHhCCCH
Q 041263 213 LGSPGSWVKG-----EILKEAILQEIAGELNKSP 241 (318)
Q Consensus 213 l~~g~l~~~~-----~~~~~~~l~~la~~~~~s~ 241 (318)
.......... ...-++.++++|+++|+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 116 VTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred ccccccCCCCcccccchhHHHHHHHHHHHhCCCE
Confidence 6422111110 1112467899999999764
No 219
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=26.19 E-value=2.8e+02 Score=23.91 Aligned_cols=105 Identities=13% Similarity=0.080 Sum_probs=57.8
Q ss_pred CCcchHHHHHHHHHHc-----CCCEEeCCCCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCC----------------
Q 041263 30 APPGEVGEAVIAAVKA-----GYRHIDCAHVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWC---------------- 88 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~-----Gi~~~DtA~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~---------------- 88 (318)
.++++....+..|++. |+|--=-+..-.++..+...++.+ ..|.-+||=++...
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l-----~~~gl~FvDS~T~~~s~a~~~A~~~gvp~~ 145 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVL-----KERGLFFVDSRTTPRSVAPQVAKELGVPAA 145 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHH-----HHTT-EEEE-S--TT-SHHHHHHHCT--EE
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHH-----HHcCCEEEeCCCCcccHHHHHHHHcCCCEE
Confidence 4566777778888765 333222121222567777666665 24555666333311
Q ss_pred -------CCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 041263 89 -------CDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGK 155 (318)
Q Consensus 89 -------~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ 155 (318)
...+.+.|++++++..+.-+..-.-+..-|--. .++...-+++.++.++|.
T Consensus 146 ~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh~~p----------------~Tl~~L~~~~~~l~~~gi 203 (213)
T PF04748_consen 146 RRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGHPRP----------------ETLEALEEWLPELEAQGI 203 (213)
T ss_dssp E-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE-SC----------------CHHHHHHHHHHHHHHCTE
T ss_pred eeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEcCCH----------------HHHHHHHHHHhHHhhCCE
Confidence 224567799999988887776666666667421 344555566666666663
No 220
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=26.16 E-value=1.2e+02 Score=23.34 Aligned_cols=54 Identities=22% Similarity=0.196 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEee
Q 041263 95 DVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVS 162 (318)
Q Consensus 95 ~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs 162 (318)
.-+..+++.|+.+....+|.+++..+++.. ....+....++.|...| |+-+-++
T Consensus 49 ~~R~~~~~ll~~~~~~~~d~ivv~~~~Rl~-------------R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 49 VDRPGLQRLLADVKAGKIDVVLVEKLDRLS-------------RNLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEEecchhh-------------CCHHHHHHHHHHHHHCC-CEEEEec
Confidence 346677888888877789999999998864 45567788888887765 4555544
No 221
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=26.16 E-value=1.1e+02 Score=27.27 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHcCCCEEeCCCCCCCHHHHHHHHHhh
Q 041263 33 GEVGEAVIAAVKAGYRHIDCAHVYDNEKEVGAALKQF 69 (318)
Q Consensus 33 ~~~~~~l~~Al~~Gi~~~DtA~~YgsE~~lG~al~~~ 69 (318)
+-.+.....|.+.|+++||. .||.+|+..=+++.+.
T Consensus 197 d~~~~~~~~a~e~gi~~i~~-gH~~tE~~g~~~l~~~ 232 (250)
T COG0327 197 DLSHHTAHDARELGLSVIDA-GHYATERPGLKALAEL 232 (250)
T ss_pred CCcHHHHHHHHHCCCeEEec-CchHHHHHHHHHHHHH
Confidence 44567778899999999994 5666666554455444
No 222
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.02 E-value=6e+02 Score=24.43 Aligned_cols=115 Identities=12% Similarity=0.153 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCC-ccceEeecCCCCCCCCCCCCCC
Q 041263 54 HVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLD-YIDLYLIHWPFRTKPETRGFEP 132 (318)
Q Consensus 54 ~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d-~iDl~~lH~p~~~~~~~~~~~~ 132 (318)
-.||.+.-|-++|++..... +.+=++|.|-.. ...--+++..-+++.-++.... .+.++.++.|.......
T Consensus 65 ~V~Gg~~~L~~ai~~~~~~~--~p~~I~v~ttC~-~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~~----- 136 (435)
T cd01974 65 AVFGGQNNLIDGLKNAYAVY--KPDMIAVSTTCM-AEVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSHI----- 136 (435)
T ss_pred eEECcHHHHHHHHHHHHHhc--CCCEEEEeCCch-HhhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCHH-----
Confidence 45788888888888764332 334456666542 2222344555554433333111 47899999886643211
Q ss_pred CCCCCCCHHHHHHHHHH-HHH-------cCCeeEEE-eeC-CC-hHHHHHHHHhCCCCCe
Q 041263 133 DIMLPLCLPETWAAMEK-LYD-------SGKARAIG-VSN-FS-TKKLKDLCSYAKVKPA 181 (318)
Q Consensus 133 ~~~~~~~~~~~~~~L~~-l~~-------~G~ir~iG-vs~-~~-~~~l~~~~~~~~~~~~ 181 (318)
.-...++++|-+ +.. .++|-=|| ..+ .+ .+++.++++..++++.
T Consensus 137 -----~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 137 -----TGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred -----HHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 112333344432 222 23455555 222 22 5678888888776553
No 223
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=25.87 E-value=1.7e+02 Score=24.55 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCC
Q 041263 98 KALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFS 165 (318)
Q Consensus 98 ~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 165 (318)
.+++++|..-. -+|++++...+. ..-.+-++.|..+..+|++|++-+.-++
T Consensus 67 ~~f~~~L~e~s---n~l~lv~~~~rN--------------p~S~~hvq~l~~l~nqg~Lr~~nLG~~S 117 (173)
T PF10171_consen 67 QSFEDALLEAS---NDLLLVSPAIRN--------------PTSDKHVQRLMRLRNQGRLRYLNLGLFS 117 (173)
T ss_pred HHHHHHHHHHh---CceeccChhhcC--------------chHHHHHHHHHHHhcCCceEEeeeeeEE
Confidence 35555555543 567777644332 2235678999999999999988776555
No 224
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.63 E-value=5.6e+02 Score=24.00 Aligned_cols=144 Identities=18% Similarity=0.160 Sum_probs=75.9
Q ss_pred CHHHHHHHHHhhhhc-CC-cCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCC
Q 041263 58 NEKEVGAALKQFFST-GV-VKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIM 135 (318)
Q Consensus 58 sE~~lG~al~~~~~~-~~-~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 135 (318)
+-..+-++++..... |. +....+.|+|-.. ...++ -|...+...+++ -||.++.............
T Consensus 170 n~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~---------~~~i~-~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~- 237 (354)
T PRK14460 170 NLDEVMRSLRTLNNEKGLNFSPRRITVSTCGI---------EKGLR-ELGESGLAFLAV-SLHAPNQELRERIMPKAAR- 237 (354)
T ss_pred CHHHHHHHHHHHhhhhccCCCCCeEEEECCCC---------hHHHH-HHHhCCCcEEEE-eCCCCCHHHHHHhcCcccc-
Confidence 445566777764111 10 1123577777431 12233 455555444443 5777665432111000001
Q ss_pred CCCCHHHHHHHHHHHHHcC-C---eeEEEee--CCChHHHHHHHHhCC-CCCeeEEeeecCCCCC----------hHHHH
Q 041263 136 LPLCLPETWAAMEKLYDSG-K---ARAIGVS--NFSTKKLKDLCSYAK-VKPAVNQVECHPVWQQ----------PALHE 198 (318)
Q Consensus 136 ~~~~~~~~~~~L~~l~~~G-~---ir~iGvs--~~~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~----------~~l~~ 198 (318)
.+++++++++.+..... + |+++=+. |.+.+++.++.+... .+..++-++||+.... ....+
T Consensus 238 --~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~ 315 (354)
T PRK14460 238 --WPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTKCKLNLIVYNPAEGLPYSAPTEERILAFEK 315 (354)
T ss_pred --CCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCHHHHHHHHH
Confidence 46788888888765432 2 3333333 445666766666543 3456778888875321 23455
Q ss_pred HHHhcCcEEEEecCCCC
Q 041263 199 YCKSSGVHLTAYSPLGS 215 (318)
Q Consensus 199 ~~~~~gi~v~a~~pl~~ 215 (318)
..+++|+.+......|.
T Consensus 316 ~l~~~Gi~vtir~~~G~ 332 (354)
T PRK14460 316 YLWSKGITAIIRKSKGQ 332 (354)
T ss_pred HHHHCCCeEEEeCCCCC
Confidence 67788999988877653
No 225
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=25.60 E-value=6e+02 Score=24.30 Aligned_cols=139 Identities=16% Similarity=0.132 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCC
Q 041263 57 DNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIML 136 (318)
Q Consensus 57 gsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~ 136 (318)
|++.-+-++|.+..... +.+-++|.|-.. ...--+++..-+++.-++++ +.++.+|.|......
T Consensus 68 G~~~kL~~~I~~~~~~~--~p~~I~v~~tC~-~~iIGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~---------- 131 (430)
T cd01981 68 GSQEKVVENITRKDKEE--KPDLIVLTPTCT-SSILQEDLQNFVRAAGLSSK---SPVLPLDVNHYRVNE---------- 131 (430)
T ss_pred CcHHHHHHHHHHHHHhc--CCCEEEEeCCcc-HHHHhhCHHHHHHHhhhccC---CCeEEecCCCccchH----------
Confidence 44445555665542222 333455555542 22222444444444333433 678999988764321
Q ss_pred CCCHHHHHHHHHHHH-----------------HcCCeeEEEeeCC------ChHHHHHHHHhCCCCCeeEEe--------
Q 041263 137 PLCLPETWAAMEKLY-----------------DSGKARAIGVSNF------STKKLKDLCSYAKVKPAVNQV-------- 185 (318)
Q Consensus 137 ~~~~~~~~~~L~~l~-----------------~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~~~q~-------- 185 (318)
..+.-.+|+.+. .+.+|--||.++. +.+.+..+++..++.+..+-.
T Consensus 132 ---~~g~~~al~~l~~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i 208 (430)
T cd01981 132 ---LQAADETFEQLVRFYAEKARPQGTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDDL 208 (430)
T ss_pred ---HHHHHHHHHHHHHHHhccccccccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHHH
Confidence 112222332222 2356888887753 345677777877654433211
Q ss_pred ------eecCCCCC---hHHHHHH-HhcCcEEEEecCCC
Q 041263 186 ------ECHPVWQQ---PALHEYC-KSSGVHLTAYSPLG 214 (318)
Q Consensus 186 ------~~~~~~~~---~~l~~~~-~~~gi~v~a~~pl~ 214 (318)
.+|+.... ..+.++. ++.|+..+...|+|
T Consensus 209 ~~~~~A~lniv~~~~~~~~~a~~L~~~~GiP~~~~~p~G 247 (430)
T cd01981 209 NELPKAWFNIVPYREYGLSAALYLEEEFGMPSVKITPIG 247 (430)
T ss_pred HhhhhCeEEEEecHHHHHHHHHHHHHHhCCCeEeccCCC
Confidence 11222111 1233333 45699988877774
No 226
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=25.54 E-value=2.6e+02 Score=26.61 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCC---hHHHHHHHhcC-cEEEEecCCCCC
Q 041263 141 PETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQ---PALHEYCKSSG-VHLTAYSPLGSP 216 (318)
Q Consensus 141 ~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~g-i~v~a~~pl~~g 216 (318)
.++.+.++++....-|...=+...+.+.++++++. ..+..++..+-||..+- ..+.+.|+++| +.++.=+.++.+
T Consensus 105 ~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 105 GGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp HHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred CcchhhhhhhhcccCcEEEEeCchhHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 67888888766555555333334457778777765 45667777777887654 56888999999 999999888765
Q ss_pred C
Q 041263 217 G 217 (318)
Q Consensus 217 ~ 217 (318)
.
T Consensus 184 ~ 184 (386)
T PF01053_consen 184 Y 184 (386)
T ss_dssp T
T ss_pred e
Confidence 4
No 227
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=25.48 E-value=2.9e+02 Score=20.56 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=57.0
Q ss_pred HHHHHHHc-CCeeEEEeeCCChHHHHHHHHhCCC-------------CCeeEEeeecCCCCChHHHHHHHhcCcEEEEec
Q 041263 146 AMEKLYDS-GKARAIGVSNFSTKKLKDLCSYAKV-------------KPAVNQVECHPVWQQPALHEYCKSSGVHLTAYS 211 (318)
Q Consensus 146 ~L~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~~-------------~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~ 211 (318)
.+..+.+. ..+.-+|+++-+++..+.+.+..++ +++++-+- ++.....+++..|-++|+.|+.=.
T Consensus 15 ~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~-tp~~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 15 HLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIA-TPPSSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp HHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEE-SSGGGHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEe-cCCcchHHHHHHHHHcCCEEEEEc
Confidence 35556666 6778889999888777766554432 22222222 111223578889999999999999
Q ss_pred CCCCCCCCCcccccchHHHHHHHHHhCC
Q 041263 212 PLGSPGSWVKGEILKEAILQEIAGELNK 239 (318)
Q Consensus 212 pl~~g~l~~~~~~~~~~~l~~la~~~~~ 239 (318)
|++. ++.....+.+++++.|.
T Consensus 94 P~~~-------~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 94 PLAL-------TLEEAEELVEAAKEKGV 114 (120)
T ss_dssp SSSS-------SHHHHHHHHHHHHHHTS
T ss_pred CCcC-------CHHHHHHHHHHHHHhCC
Confidence 9964 34555778888888764
No 228
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=25.47 E-value=4.1e+02 Score=22.35 Aligned_cols=117 Identities=19% Similarity=0.141 Sum_probs=72.2
Q ss_pred CceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCee
Q 041263 78 DEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKAR 157 (318)
Q Consensus 78 ~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir 157 (318)
....++-.+.......+.....+...+++.+...-.+++-- +..... .......+.+..|++.|-
T Consensus 82 ~~~~l~ini~~~~l~~~~~~~~~~~~l~~~~~~~~~l~iei-~e~~~~------------~~~~~~~~~~~~l~~~G~-- 146 (240)
T cd01948 82 PDLRLSVNLSARQLRDPDFLDRLLELLAETGLPPRRLVLEI-TESALI------------DDLEEALATLRRLRALGV-- 146 (240)
T ss_pred CCeEEEEECCHHHhCCcHHHHHHHHHHHHcCCCHHHEEEEE-ecchhh------------CCHHHHHHHHHHHHHCCC--
Confidence 44556666544444456777888899999887642333222 211110 334557899999999998
Q ss_pred EEEeeCCChH--HHHHHHHhCCCCCeeEEeeecCCCC-----C-----hHHHHHHHhcCcEEEEecC
Q 041263 158 AIGVSNFSTK--KLKDLCSYAKVKPAVNQVECHPVWQ-----Q-----PALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 158 ~iGvs~~~~~--~l~~~~~~~~~~~~~~q~~~~~~~~-----~-----~~l~~~~~~~gi~v~a~~p 212 (318)
.+++.++... .++.+.. .+|+++-+..+.+.. . ..++..|+..|+.+++-..
T Consensus 147 ~l~ld~~g~~~~~~~~l~~---~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 210 (240)
T cd01948 147 RIALDDFGTGYSSLSYLKR---LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGV 210 (240)
T ss_pred eEEEeCCCCcHhhHHHHHh---CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEec
Confidence 6888877633 3333332 345666555444322 1 4578889999999998754
No 229
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.46 E-value=6.3e+02 Score=24.50 Aligned_cols=125 Identities=10% Similarity=0.093 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHHcCCeeEEEeeC-----CC--hHHHHHHHHhC-CCCCeeEEeeecCC---CCChHHHHHHHhcCc
Q 041263 137 PLCLPETWAAMEKLYDSGKARAIGVSN-----FS--TKKLKDLCSYA-KVKPAVNQVECHPV---WQQPALHEYCKSSGV 205 (318)
Q Consensus 137 ~~~~~~~~~~L~~l~~~G~ir~iGvs~-----~~--~~~l~~~~~~~-~~~~~~~q~~~~~~---~~~~~l~~~~~~~gi 205 (318)
..+++.+.+.++.|+++| ++.|-+.. +. ...+.++++.. ... ....+.+... .-..++++..++.|.
T Consensus 182 sr~~e~Iv~Ei~~l~~~G-~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~-~~~~ir~~~~~p~~~~~ell~~m~~~~~ 259 (449)
T PRK14332 182 SRDPKSIVREIQDLQEKG-IRQVTLLGQNVNSYKEQSTDFAGLIQMLLDET-TIERIRFTSPHPKDFPDHLLSLMAKNPR 259 (449)
T ss_pred cCCHHHHHHHHHHHHHCC-CeEEEEecccCCcccCCcccHHHHHHHHhcCC-CcceEEEECCCcccCCHHHHHHHHhCCC
Confidence 367899999999999987 67776542 21 11244443321 111 1222333333 334689999888763
Q ss_pred E-EEEecCCCCCCCCCcccccchHHHHHHHHHhCCCHHHHHHHHHhhc-C-----CeEecCC--CCHHHHHHhhcc
Q 041263 206 H-LTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQVALRWGLQS-G-----HSILPKS--VNESRIKENFNL 272 (318)
Q Consensus 206 ~-v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~-~-----~~vl~g~--~~~~~l~enl~~ 272 (318)
. -..+-|+-+| +++.|+.+.+.+...-..-+++++... | ..+|+|. .+.+++++.++.
T Consensus 260 ~~~~l~lgvQSg---------sd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~tl~~ 326 (449)
T PRK14332 260 FCPNIHLPLQAG---------NTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDTLAV 326 (449)
T ss_pred ccceEEECCCcC---------CHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHHHHH
Confidence 2 2334444343 234455554433322233445555443 2 2467774 677777666643
No 230
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=25.39 E-value=5.9e+02 Score=24.17 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=63.4
Q ss_pred CCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCC
Q 041263 54 HVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPD 133 (318)
Q Consensus 54 ~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~ 133 (318)
-.||.+..|-+++++..... +.+=++|.|-.. ...--+++..-+++.-++.+ +.++.+|.|.......
T Consensus 66 ~VfGg~~~L~~~i~~~~~~~--~P~~i~v~~tC~-~~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~------ 133 (410)
T cd01968 66 VIFGGEKKLYKAILEIIERY--HPKAVFVYSTCV-VALIGDDIDAVCKTASEKFG---IPVIPVHSPGFVGNKN------ 133 (410)
T ss_pred eeeccHHHHHHHHHHHHHhC--CCCEEEEECCCc-hhhhccCHHHHHHHHHHhhC---CCEEEEECCCcccChh------
Confidence 45788888888888874432 344466666553 22223455555555444543 6788999887543211
Q ss_pred CCCCCCHHHHHHHHHHHH---------HcCCeeEEEeeCCC--hHHHHHHHHhCCCCC
Q 041263 134 IMLPLCLPETWAAMEKLY---------DSGKARAIGVSNFS--TKKLKDLCSYAKVKP 180 (318)
Q Consensus 134 ~~~~~~~~~~~~~L~~l~---------~~G~ir~iGvs~~~--~~~l~~~~~~~~~~~ 180 (318)
.-...++++|-+.. +++.|--||-.++. .+.+.++++..++++
T Consensus 134 ----~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v 187 (410)
T cd01968 134 ----LGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVAGELWGVKPLLEKLGIRV 187 (410)
T ss_pred ----HHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCcccHHHHHHHHHHcCCeE
Confidence 22233444444333 14678778844333 457888888877643
No 231
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=25.07 E-value=2.3e+02 Score=22.11 Aligned_cols=64 Identities=8% Similarity=-0.004 Sum_probs=45.9
Q ss_pred CCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCC---ccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 041263 76 KRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLD---YIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYD 152 (318)
Q Consensus 76 ~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d---~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 152 (318)
+|=.+.|+-|++. -.-...+++.+.++.+.+..+ -.|++++-.+.... .+..+..+.|+.+.+
T Consensus 48 ~R~G~~VsKKvG~-AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~-------------~~~~~l~~~l~~ll~ 113 (122)
T PRK03459 48 PRFGLVVSKAVGN-AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAAT-------------ASSAELERDVRAGLG 113 (122)
T ss_pred CEEEEEEeeeccc-hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECccccc-------------CCHHHHHHHHHHHHH
Confidence 6778899999874 334678999999999887753 36999988765432 455667777766655
Q ss_pred c
Q 041263 153 S 153 (318)
Q Consensus 153 ~ 153 (318)
.
T Consensus 114 k 114 (122)
T PRK03459 114 K 114 (122)
T ss_pred H
Confidence 4
No 232
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=25.02 E-value=95 Score=24.02 Aligned_cols=40 Identities=15% Similarity=-0.005 Sum_probs=35.2
Q ss_pred CCcchHHHHHHHHHHcCCCEEeCCCCCC-CHHHHHHHHHhh
Q 041263 30 APPGEVGEAVIAAVKAGYRHIDCAHVYD-NEKEVGAALKQF 69 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-sE~~lG~al~~~ 69 (318)
.+.+.-..++...++.|.+.-+.|..|| +...|..|.+.+
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y 53 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQY 53 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4556667888889999999999999999 999999999986
No 233
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.99 E-value=1.9e+02 Score=29.86 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc--CCeeEEEeeCCChHHHHH
Q 041263 94 EDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDS--GKARAIGVSNFSTKKLKD 171 (318)
Q Consensus 94 ~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--G~ir~iGvs~~~~~~l~~ 171 (318)
+.+++-++.....-.....-+|+|+..+.. ....+++|.+..++ +.+.+|.+++.....+..
T Consensus 107 DdIReLie~~~~~P~~gr~KViIIDEah~L----------------s~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 107 DEMAQLLDKAVYAPTAGRFKVYMIDEVHML----------------TNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred HHHHHHHHHHHhchhcCCceEEEEEChHhc----------------CHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 445555554433323345668888876542 24677888888877 899999999976555555
Q ss_pred HHHh
Q 041263 172 LCSY 175 (318)
Q Consensus 172 ~~~~ 175 (318)
++..
T Consensus 171 IrSR 174 (700)
T PRK12323 171 VLSR 174 (700)
T ss_pred HHHH
Confidence 5554
No 234
>PRK13843 conjugal transfer protein TraH; Provisional
Probab=24.85 E-value=1.1e+02 Score=26.25 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEeeCCC
Q 041263 138 LCLPETWAAMEKLYDSGKARAIGVSNFS 165 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 165 (318)
.+.++++...+++..+|.+| +|+.+|+
T Consensus 50 ~s~~EA~~~vr~l~~~g~v~-VGl~Qf~ 76 (207)
T PRK13843 50 KTPDEAMALIRQYVGQAVVR-VGLTQYP 76 (207)
T ss_pred CCHHHHHHHHHHHHhcCcee-eeeEEec
Confidence 56789999999999999555 9999876
No 235
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=24.79 E-value=1.6e+02 Score=25.13 Aligned_cols=47 Identities=17% Similarity=0.002 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 041263 93 PEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAME 148 (318)
Q Consensus 93 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 148 (318)
.+..++..+.+.+.|.-+..|++.|.......... ..+.+++.+.|.
T Consensus 104 ~~aa~~~w~~a~~~l~~~~ydlviLDEl~~al~~g---------~l~~eeV~~~l~ 150 (198)
T COG2109 104 IAAAKAGWEHAKEALADGKYDLVILDELNYALRYG---------LLPLEEVVALLK 150 (198)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHcC---------CCCHHHHHHHHh
Confidence 35788999999999999999999998654322111 155566666655
No 236
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=24.75 E-value=2.6e+02 Score=22.15 Aligned_cols=65 Identities=18% Similarity=0.139 Sum_probs=42.8
Q ss_pred CCCceEEEeccCCCCCCCChHHHHHHHHHHHhC--CCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 041263 76 KRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQ--LDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDS 153 (318)
Q Consensus 76 ~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 153 (318)
+|=.+.|+-|....-.....+++.+.++.+... ..-.|++++-.+.... .+..+..+.|..|.+.
T Consensus 46 ~RiG~~VsKK~~g~AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~-------------~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 46 PRLGLVIGKKSVKLAVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGE-------------LENPELHQQFGKLWKR 112 (130)
T ss_pred ccEEEEEecccCccHhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCccc-------------CCHHHHHHHHHHHHHH
Confidence 466677777743334456789999999988654 2458999998876432 4455666666666443
No 237
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=24.73 E-value=2.3e+02 Score=24.18 Aligned_cols=73 Identities=16% Similarity=0.336 Sum_probs=50.1
Q ss_pred CCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCCHHHHHHHHHhhcC--
Q 041263 176 AKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQVALRWGLQSG-- 253 (318)
Q Consensus 176 ~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~-- 253 (318)
.++.|+++-.-+--. ..+..++.+++++.++.+.|- ..-|=.++|++|++.++
T Consensus 34 ~gi~Pd~iiGDfDSi--~~~~~~~~~~~~~~~~~~~~e-----------------------KD~TD~e~Al~~~~~~~~~ 88 (203)
T TIGR01378 34 LGLTPDLIVGDFDSI--DEEELDFYKKAGVKIIVFPPE-----------------------KDTTDLELALKYALERGAD 88 (203)
T ss_pred CCCCCCEEEeCcccC--CHHHHHHHHHcCCceEEcCCC-----------------------CCCCHHHHHHHHHHHCCCC
Confidence 455666555443222 246777888888888877655 23466789999999886
Q ss_pred CeEecCC--CCHHHHHHhhccc
Q 041263 254 HSILPKS--VNESRIKENFNLF 273 (318)
Q Consensus 254 ~~vl~g~--~~~~~l~enl~~~ 273 (318)
..++.|+ ...||.-.|+..+
T Consensus 89 ~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 89 EITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 3566664 6788998888765
No 238
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=24.69 E-value=1.1e+02 Score=20.97 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEeeCC
Q 041263 138 LCLPETWAAMEKLYDSGKARAIGVSNF 164 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iGvs~~ 164 (318)
.+...+-..|+.|++.|+|+.+...+.
T Consensus 26 ~s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 26 ISPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp --HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred cCHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 455677789999999999999988765
No 239
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=24.57 E-value=6.3e+02 Score=24.20 Aligned_cols=112 Identities=12% Similarity=0.052 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCC
Q 041263 55 VYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDI 134 (318)
Q Consensus 55 ~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~ 134 (318)
.||.+.-|-++|++..... +.+-++|.|-.. ...--+++..-+++. ++++ ++++.+|.|.......
T Consensus 67 V~Gg~~kL~~~I~~~~~~~--~p~~I~V~ttC~-~~~IGdDi~~v~~~~-~~~~---~~vi~v~t~gf~g~~~------- 132 (427)
T cd01971 67 VFGGEDRLRELIKSTLSII--DADLFVVLTGCI-AEIIGDDVGAVVSEF-QEGG---APIVYLETGGFKGNNY------- 132 (427)
T ss_pred EeCCHHHHHHHHHHHHHhC--CCCEEEEEcCCc-HHHhhcCHHHHHHHh-hhcC---CCEEEEECCCcCcccc-------
Confidence 4787777888887763322 344566666542 222234555555554 4444 7899999987654221
Q ss_pred CCCCCHHHHHHHHHH-HH------HcCCeeEEEeeC-------CChHHHHHHHHhCCCCCeeE
Q 041263 135 MLPLCLPETWAAMEK-LY------DSGKARAIGVSN-------FSTKKLKDLCSYAKVKPAVN 183 (318)
Q Consensus 135 ~~~~~~~~~~~~L~~-l~------~~G~ir~iGvs~-------~~~~~l~~~~~~~~~~~~~~ 183 (318)
.-...++++|-+ +. +.+.|--||..+ .+.+.+.++++..++++..+
T Consensus 133 ---~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 133 ---AGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred ---cHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 222334444433 22 235588888642 23577888888877655433
No 240
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=24.51 E-value=6.2e+02 Score=24.13 Aligned_cols=145 Identities=18% Similarity=0.112 Sum_probs=72.1
Q ss_pred chHHHHHH-HHHHcCCCEEeCCCCCC---CHHHHH-HHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHH-------
Q 041263 33 GEVGEAVI-AAVKAGYRHIDCAHVYD---NEKEVG-AALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKAL------- 100 (318)
Q Consensus 33 ~~~~~~l~-~Al~~Gi~~~DtA~~Yg---sE~~lG-~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~v------- 100 (318)
.++.+++. .+++.+.+.|=| |+ .-.-++ ..|+.++..+ -=+++|+|-.+. .+++.+++
T Consensus 37 ~~A~~il~~~m~~~~~tvfLt---ltgamisaGLr~~ii~~LIr~g---~VD~IVTTGAnl----~hD~~~alg~~~y~G 106 (384)
T PRK00770 37 REACQLLAQRMIDDGVTVGLT---LSGAMTPAGFGVSALAPLIEAG---FIDWIISTGANL----YHDLHYALGLPLFAG 106 (384)
T ss_pred HHHHHHHHHHHHhcCCcEEEE---eccchhhhhcChHHHHHHHHcC---CccEEEcCCccH----HHHHHHHhCCCcccC
Confidence 56778888 888888876643 33 355677 6778774333 234566665421 11222222
Q ss_pred -----HHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHh
Q 041263 101 -----SRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSY 175 (318)
Q Consensus 101 -----e~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 175 (318)
+.-|+..|+++|==+++-+ ....++-+.|.++.++..- + ..+++.++...+-.
T Consensus 107 ~~~~dd~~Lr~~GinRI~dv~ip~------------------e~~~~~e~~l~~il~~~~~---~-~~~s~~E~i~~LGk 164 (384)
T PRK00770 107 HPFVDDVKLREEGIIRIYDIIFDY------------------DVLLETDAFIREILKAEPF---Q-KRMGTAEFHYLLGK 164 (384)
T ss_pred CCCCCHHHHHHcCCCcccccCcCh------------------HHHHHHHHHHHHHHHhccc---c-CCccHHHHHHHHHH
Confidence 3334444444432222211 1122222333434333221 1 22555554333321
Q ss_pred CCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCCC
Q 041263 176 AKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLG 214 (318)
Q Consensus 176 ~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~ 214 (318)
.+...+.+.-..+..++.+|.++||+|++-++..
T Consensus 165 -----~i~~~~~~~~~~e~SiL~~Ayk~~IPVf~Pa~~D 198 (384)
T PRK00770 165 -----YVREVEKQLGVPHKSLLATAYEYGVPIYTSSPGD 198 (384)
T ss_pred -----HhhhhcccCCCCcccHHHHHHHcCCCEECCCchH
Confidence 1111111222345789999999999999987653
No 241
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=24.45 E-value=5.9e+02 Score=23.85 Aligned_cols=140 Identities=17% Similarity=0.190 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCC
Q 041263 56 YDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIM 135 (318)
Q Consensus 56 YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~ 135 (318)
||.|.-+-+++++..... .++-++|.|-... ..--+++..-+++.-++.+. .++.+|.+.......
T Consensus 56 ~G~~~kL~~~i~~~~~~~--~P~~i~v~~sC~~-~iIGdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~~~-------- 121 (398)
T PF00148_consen 56 FGGEEKLREAIKEIAEKY--KPKAIFVVTSCVP-EIIGDDIEAVARELQEEYGI---PVIPVHTPGFSGSYS-------- 121 (398)
T ss_dssp HTSHHHHHHHHHHHHHHH--STSEEEEEE-HHH-HHTTTTHHHHHHHHHHHHSS---EEEEEE--TTSSSHH--------
T ss_pred hcchhhHHHHHHHHHhcC--CCcEEEEECCCCH-HHhCCCHHHHHHHhhcccCC---cEEEEECCCccCCcc--------
Confidence 567766777776654332 3466777776521 12234566566665566664 888889876522110
Q ss_pred CCCCHHHHHHHHHHHH-H------cCCeeEEEeeCCC---hHHHHHHHHhCCCCCeeEEee----------------ecC
Q 041263 136 LPLCLPETWAAMEKLY-D------SGKARAIGVSNFS---TKKLKDLCSYAKVKPAVNQVE----------------CHP 189 (318)
Q Consensus 136 ~~~~~~~~~~~L~~l~-~------~G~ir~iGvs~~~---~~~l~~~~~~~~~~~~~~q~~----------------~~~ 189 (318)
.....++.+|-+.. + .+.|--||.++.. ..++.++++..+. .++.+. +|+
T Consensus 122 --~G~~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi--~v~~~~~~~~t~~e~~~~~~A~lni 197 (398)
T PF00148_consen 122 --QGYDAALRALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGI--EVNAVFPGGTTLEEIRKAPEAALNI 197 (398)
T ss_dssp --HHHHHHHHHHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTE--EEEEEEETTBCHHHHHHGGGSSEEE
T ss_pred --chHHHHHHHHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCC--ceEEEeCCCCCHHHHHhCCcCcEEE
Confidence 23455565555444 2 2678788998766 4456677776664 222222 233
Q ss_pred CCCCh---HHHHHHHh-cCcEEEE-ecCC
Q 041263 190 VWQQP---ALHEYCKS-SGVHLTA-YSPL 213 (318)
Q Consensus 190 ~~~~~---~l~~~~~~-~gi~v~a-~~pl 213 (318)
..... ...++.++ .|+..+. -.|+
T Consensus 198 v~~~~~~~~~a~~L~e~~giP~~~~~~p~ 226 (398)
T PF00148_consen 198 VLCPEGGPYAAEWLEERFGIPYLYFPSPY 226 (398)
T ss_dssp ESSCCHHHHHHHHHHHHHT-EEEEEC-SB
T ss_pred EeccchhhHHHHHHHHHhCCCeeeccccc
Confidence 32222 25566555 5999888 5565
No 242
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=24.42 E-value=1e+03 Score=26.61 Aligned_cols=91 Identities=11% Similarity=-0.030 Sum_probs=59.0
Q ss_pred HhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-Ce--eEEEeeCCChHHHHHHHHhCCCCCee
Q 041263 106 HLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSG-KA--RAIGVSNFSTKKLKDLCSYAKVKPAV 182 (318)
Q Consensus 106 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~i--r~iGvs~~~~~~l~~~~~~~~~~~~~ 182 (318)
+-|.+.||+= ++... .+..+.+..+..+.+.- .+ --|-+-+..++.++..++...-++.+
T Consensus 395 e~GA~iIDVn----~g~~~-------------id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~G~~II 457 (1229)
T PRK09490 395 ENGAQIIDIN----MDEGM-------------LDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKGIV 457 (1229)
T ss_pred HCCCCEEEEC----CCCCC-------------CCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcCCCCEE
Confidence 5578899994 32211 34455565555555431 11 23778888899999999986656666
Q ss_pred EEeeecCCCCC-hHHHHHHHhcCcEEEEecCC
Q 041263 183 NQVECHPVWQQ-PALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 183 ~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~pl 213 (318)
|-+..--.... .++++.++++|..++++.--
T Consensus 458 NSIs~~~~~~~~~~~~~l~~kyga~vV~m~~d 489 (1229)
T PRK09490 458 NSISLKEGEEKFIEHARLVRRYGAAVVVMAFD 489 (1229)
T ss_pred EeCCCCCCCccHHHHHHHHHHhCCCEEEEecC
Confidence 66554322222 46899999999999998643
No 243
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.41 E-value=1.5e+02 Score=21.33 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=32.5
Q ss_pred HHHHHHcCCeeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEec
Q 041263 147 MEKLYDSGKARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYS 211 (318)
Q Consensus 147 L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~ 211 (318)
+++|++.|++. +| ..+..+.++....+.+++--..+. .-...+..+|++++|+++-+.
T Consensus 3 ~~~~~ragkl~-~G-----~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV-IG-----TKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE-Ec-----HHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 55666777644 22 345555555555444444333222 112467788898888887764
No 244
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=24.34 E-value=2.9e+02 Score=21.23 Aligned_cols=64 Identities=17% Similarity=0.093 Sum_probs=43.0
Q ss_pred CCCceEEEeccCCCCCCCChHHHHHHHHHHHhCC--CccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 041263 76 KRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQL--DYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYD 152 (318)
Q Consensus 76 ~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~--d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 152 (318)
+|=.+.|+-|....-.....+++.+.++.+.+.. ...|++++-.+...+ .+..++.+.|..|.+
T Consensus 45 ~R~G~~VsKK~~g~AV~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~-------------~~~~~l~~~l~~ll~ 110 (114)
T PRK01732 45 PRLGLTVAKKNVKRAHERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVAD-------------LDNRELFELLEKLWR 110 (114)
T ss_pred cEEEEEEEcccCcchhHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCccc-------------CCHHHHHHHHHHHHH
Confidence 5666777777433344567888888888886542 357999987765432 556777777777654
No 245
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=24.17 E-value=6e+02 Score=23.81 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeeEEEeeCCChHHHHHHH
Q 041263 95 DVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSG-KARAIGVSNFSTKKLKDLC 173 (318)
Q Consensus 95 ~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~ 173 (318)
.-+..+-+.|.++|+++|.+- +|... ..-++.++.+.+.+ ..+..+++....+.++.+.
T Consensus 23 ~~k~~ia~~L~~~Gv~~IEvG---~p~~~-----------------~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~ 82 (365)
T TIGR02660 23 AEKLAIARALDEAGVDELEVG---IPAMG-----------------EEERAVIRAIVALGLPARLMAWCRARDADIEAAA 82 (365)
T ss_pred HHHHHHHHHHHHcCCCEEEEe---CCCCC-----------------HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHH
Confidence 455667777999999998885 34221 23366677776664 3666777767777787776
Q ss_pred HhCCCCCeeEEeeecCCC--------C--C------hHHHHHHHhcCcEEEE
Q 041263 174 SYAKVKPAVNQVECHPVW--------Q--Q------PALHEYCKSSGVHLTA 209 (318)
Q Consensus 174 ~~~~~~~~~~q~~~~~~~--------~--~------~~l~~~~~~~gi~v~a 209 (318)
+. +. +.+.+....-+ . + .+.+++++++|..+..
T Consensus 83 ~~-g~--~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~ 131 (365)
T TIGR02660 83 RC-GV--DAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSV 131 (365)
T ss_pred cC-Cc--CEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 53 33 33333332211 1 1 2578889999987553
No 246
>PRK10551 phage resistance protein; Provisional
Probab=24.11 E-value=7.1e+02 Score=24.63 Aligned_cols=115 Identities=16% Similarity=0.096 Sum_probs=71.0
Q ss_pred CceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCee
Q 041263 78 DEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKAR 157 (318)
Q Consensus 78 ~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir 157 (318)
.++.|+-.+.........+...+.+.++.++....-+. +.-.+... .......+.++.|++.|-
T Consensus 348 ~~~~lsINis~~~l~~~~f~~~l~~~l~~~~~~~~~Lv-lEItE~~~-------------~~~~~~~~~l~~Lr~~G~-- 411 (518)
T PRK10551 348 VGAKLGINISPAHLHSDSFKADVQRLLASLPADHFQIV-LEITERDM-------------VQEEEATKLFAWLHSQGI-- 411 (518)
T ss_pred CCcEEEEEeCHHHHCCchHHHHHHHHHHhCCCCcceEE-EEEechHh-------------cCCHHHHHHHHHHHHCCC--
Confidence 35666667765555567788889999999887643332 22222111 122446688999999998
Q ss_pred EEEeeCCCh--HHHHHHHHhCCCCCeeEEeeecCCC---CC-------hHHHHHHHhcCcEEEEec
Q 041263 158 AIGVSNFST--KKLKDLCSYAKVKPAVNQVECHPVW---QQ-------PALHEYCKSSGVHLTAYS 211 (318)
Q Consensus 158 ~iGvs~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~---~~-------~~l~~~~~~~gi~v~a~~ 211 (318)
.|.+.+|.. ..+..+.. .+++.+-+.-+... .+ ..++..|++.|+.+++-+
T Consensus 412 ~ialDDFGtg~ssl~~L~~---l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEG 474 (518)
T PRK10551 412 EIAIDDFGTGHSALIYLER---FTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEG 474 (518)
T ss_pred EEEEECCCCCchhHHHHHh---CCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 777777763 23333322 34455544433222 11 358889999999999874
No 247
>PRK11059 regulatory protein CsrD; Provisional
Probab=23.85 E-value=3.8e+02 Score=27.15 Aligned_cols=116 Identities=9% Similarity=0.043 Sum_probs=70.8
Q ss_pred ceEEEeccCCCCCCCChHHHHHHHHHHHh-CCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCee
Q 041263 79 EMFITSKIWCCDLAPEDVPKALSRSLEHL-QLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKAR 157 (318)
Q Consensus 79 ~~~i~tK~~~~~~~~~~i~~~ve~SL~~L-g~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir 157 (318)
+..++-.+.........+...+...|... +.. .+-+.+--++...- .+...+...+..|++.|-
T Consensus 483 ~~~l~inls~~~l~~~~f~~~l~~~l~~~~~~~-~~~l~~Ei~E~~~~------------~~~~~~~~~l~~L~~~G~-- 547 (640)
T PRK11059 483 EENLSINLSVDSLLSRAFQRWLRDTLLQCPRSQ-RKRLIFELAEADVC------------QHISRLRPVLRMLRGLGC-- 547 (640)
T ss_pred CCeEEEEcCHHHhCChhHHHHHHHHHHhcCCCC-cceEEEEEechhhh------------cCHHHHHHHHHHHHHCCC--
Confidence 34455555444444456777788888777 543 45555554433210 445778899999999998
Q ss_pred EEEeeCCCh--HHHHHHHHhCCCCCeeEEeeecCCC---CC-------hHHHHHHHhcCcEEEEecC
Q 041263 158 AIGVSNFST--KKLKDLCSYAKVKPAVNQVECHPVW---QQ-------PALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 158 ~iGvs~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~---~~-------~~l~~~~~~~gi~v~a~~p 212 (318)
.+++.+|.. ..+..+.. .+++.+-+.-++.. .+ ..++..|+..|+.|+|-+.
T Consensus 548 ~iaiddfG~g~~s~~~L~~---l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viAegV 611 (640)
T PRK11059 548 RLAVDQAGLTVVSTSYIKE---LNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFATGV 611 (640)
T ss_pred EEEEECCCCCcccHHHHHh---CCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEEEEe
Confidence 677777763 23333322 34566655443321 11 4689999999999999743
No 248
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=23.74 E-value=4.9e+02 Score=22.76 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcC-CeeEEE------eeC-------------------CChHHHHHHHHhCCCCCeeEEeeecCCCC
Q 041263 139 CLPETWAAMEKLYDSG-KARAIG------VSN-------------------FSTKKLKDLCSYAKVKPAVNQVECHPVWQ 192 (318)
Q Consensus 139 ~~~~~~~~L~~l~~~G-~ir~iG------vs~-------------------~~~~~l~~~~~~~~~~~~~~q~~~~~~~~ 192 (318)
+.+...+.++.|.+.| .+-++| +.+ ...+.+.++.+....+ ...+..+|++.+
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~p-v~lm~y~n~~~~ 90 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIP-IVLMGYYNPILQ 90 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCC-EEEEEecCHHHH
Q ss_pred C--hHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCCH
Q 041263 193 Q--PALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKSP 241 (318)
Q Consensus 193 ~--~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~ 241 (318)
. +..++.|++.|+.-+..--+ .......+.+.++++|+.+
T Consensus 91 ~G~~~fi~~~~~aG~~giiipDl---------~~ee~~~~~~~~~~~g~~~ 132 (242)
T cd04724 91 YGLERFLRDAKEAGVDGLIIPDL---------PPEEAEEFREAAKEYGLDL 132 (242)
T ss_pred hCHHHHHHHHHHCCCcEEEECCC---------CHHHHHHHHHHHHHcCCcE
No 249
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=23.28 E-value=6.9e+02 Score=24.21 Aligned_cols=122 Identities=11% Similarity=0.070 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHHcC-CeeEEEeeC--CC--hHHHHHHHHhC---CCCCeeEEeeecCCCCChHHHHHHHhcCcEEEE
Q 041263 138 LCLPETWAAMEKLYDSG-KARAIGVSN--FS--TKKLKDLCSYA---KVKPAVNQVECHPVWQQPALHEYCKSSGVHLTA 209 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G-~ir~iGvs~--~~--~~~l~~~~~~~---~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a 209 (318)
.+.+.+++.++.+++.. .++.+-+.. |. ...+.++++.. ++.+. .+... +-..++++..++.|+..+.
T Consensus 227 rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~-~~~~~---~~~~e~l~~l~~aG~~~v~ 302 (472)
T TIGR03471 227 RSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWS-CNARA---NVDYETLKVMKENGLRLLL 302 (472)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEE-EEecC---CCCHHHHHHHHHcCCCEEE
Confidence 57889999999999874 566666543 32 34444443332 22111 12221 2357899999999987666
Q ss_pred ecCCCCCCCCCcccccchHHHHHHHHHhCCCHHHHHHHHHhhcC----CeEecCC--CCHHHHHHhhccc
Q 041263 210 YSPLGSPGSWVKGEILKEAILQEIAGELNKSPAQVALRWGLQSG----HSILPKS--VNESRIKENFNLF 273 (318)
Q Consensus 210 ~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~----~~vl~g~--~~~~~l~enl~~~ 273 (318)
.+.=. ...+.++.+.+.+......-+++++...| ...++|. .+.+.+.+.++.+
T Consensus 303 iGiES----------~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~ 362 (472)
T TIGR03471 303 VGYES----------GDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFA 362 (472)
T ss_pred EcCCC----------CCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 54331 22344555533332223334666666666 2456774 7888888877643
No 250
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=23.23 E-value=2.8e+02 Score=21.06 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=31.7
Q ss_pred eeCCChHHHHHHHHhCCCCCeeEEeee--cCCCCChHHHHHHHhcCcEEEEecCC
Q 041263 161 VSNFSTKKLKDLCSYAKVKPAVNQVEC--HPVWQQPALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 161 vs~~~~~~l~~~~~~~~~~~~~~q~~~--~~~~~~~~l~~~~~~~gi~v~a~~pl 213 (318)
.+..+++++..++... +|+++-+-- +.....+++.++++++||++..+..-
T Consensus 36 ~~~l~~~~l~~~~~~~--~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 36 LSDLDPEALLPLLAED--RPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred cccCCHHHHHHHHhhC--CCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 4456677777766643 244433322 22233478889999999999988643
No 251
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=23.00 E-value=2.5e+02 Score=24.38 Aligned_cols=72 Identities=17% Similarity=0.129 Sum_probs=44.0
Q ss_pred CCcchHHHHHHHHHHcCCCEEeCCCCCC----CHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHH
Q 041263 30 APPGEVGEAVIAAVKAGYRHIDCAHVYD----NEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLE 105 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg----sE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~ 105 (318)
.+.++..++.+.+.++|..|+-|+..|+ +.+.+-...+.. + .+-.+..+--+ .+.+...+-++.--.
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~---~--~~~~IKasGGI----rt~~~a~~~i~aGA~ 203 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV---G--PRVGVKASGGI----RTLEDALAMIEAGAT 203 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh---C--CCceEEeeCCc----CCHHHHHHHHHcCcc
Confidence 5667888999999999999999999984 344443333321 1 12222222222 344566666666666
Q ss_pred HhCCC
Q 041263 106 HLQLD 110 (318)
Q Consensus 106 ~Lg~d 110 (318)
|+||+
T Consensus 204 riGtS 208 (221)
T PRK00507 204 RLGTS 208 (221)
T ss_pred eEccC
Confidence 66664
No 252
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=22.90 E-value=2.5e+02 Score=24.57 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEe----eCCChHHHHHHHHhCCCCCeeEEeeecCCCCC--hHHHHHHHhcCcEEEEecC
Q 041263 139 CLPETWAAMEKLYDSGKARAIGV----SNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQ--PALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 139 ~~~~~~~~L~~l~~~G~ir~iGv----s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~p 212 (318)
..++..++|+.|+ +..|.. |.+....++.+++..+. ..+.|+++. .+++...-+.|..++.-+.
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl------~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGL------KVYAPLWGRDPEELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCC------EEeecccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 4566667777776 555554 44556677777777665 345677654 4677777777777666555
Q ss_pred CCCCCC---CCcc-cccchHHHHHHHHHhCCCHH
Q 041263 213 LGSPGS---WVKG-EILKEAILQEIAGELNKSPA 242 (318)
Q Consensus 213 l~~g~l---~~~~-~~~~~~~l~~la~~~~~s~~ 242 (318)
-+.|.. .|+. +....+.++.++++||+.|+
T Consensus 144 sa~gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 144 SAEGLDESWLGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred eccCCChHHhCCccCHHHHHHHHHHHHhcCCCcc
Confidence 544431 1111 11223678888888888764
No 253
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=22.90 E-value=5.7e+02 Score=24.50 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhC-CCccceEeecCCCCCCCCCCCCCCC
Q 041263 55 VYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQ-LDYIDLYLIHWPFRTKPETRGFEPD 133 (318)
Q Consensus 55 ~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg-~d~iDl~~lH~p~~~~~~~~~~~~~ 133 (318)
.||.+..+-+++++..... +.+=++|.|-.... .--+++..-+++.-++.. ...+.++.+|.|+......
T Consensus 62 VfGg~~~L~~~i~~~~~~~--~p~~I~V~ttc~~e-iIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~------ 132 (417)
T cd01966 62 ILGGGENLEEALDTLAERA--KPKVIGLLSTGLTE-TRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLE------ 132 (417)
T ss_pred EECCHHHHHHHHHHHHHhc--CCCEEEEECCCccc-ccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHH------
Confidence 4787777888887763222 34446666665321 222445555544333321 0137788999987653211
Q ss_pred CCCCCCHHHHHHHHHH-H--------HHcCCeeEEEeeCCC---hHHHHHHHHhCCCCC
Q 041263 134 IMLPLCLPETWAAMEK-L--------YDSGKARAIGVSNFS---TKKLKDLCSYAKVKP 180 (318)
Q Consensus 134 ~~~~~~~~~~~~~L~~-l--------~~~G~ir~iGvs~~~---~~~l~~~~~~~~~~~ 180 (318)
.-...++++|.+ + ++.++|-=||-++.+ .+++.++++..++++
T Consensus 133 ----~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v 187 (417)
T cd01966 133 ----DGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEP 187 (417)
T ss_pred ----HHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 112333333322 2 234568888755443 456666777666544
No 254
>PRK06740 histidinol-phosphatase; Validated
Probab=22.79 E-value=6.1e+02 Score=23.44 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHcCCeeEEE
Q 041263 98 KALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLC----LPETWAAMEKLYDSGKARAIG 160 (318)
Q Consensus 98 ~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~l~~~G~ir~iG 160 (318)
..+++.|+....||+ +.-+|..+...-.... ......... ...-++.+.++.+.|.+..||
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~-~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIg 220 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPD-TKEYFEEHDLYALYDTFFKTVECAIRSELFDIIA 220 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCcc-HHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEee
Confidence 456667777777777 7788976432100000 000000001 233557888888999877776
No 255
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=22.78 E-value=8.4e+02 Score=25.04 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=70.1
Q ss_pred EEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEe
Q 041263 82 ITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGV 161 (318)
Q Consensus 82 i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGv 161 (318)
|+--+....+....+...+.+.|+..+... .-+.+--.+... ........+.+..|++.|- .|++
T Consensus 632 ~~inls~~~l~~~~~~~~l~~~l~~~~~~~-~~l~~ei~e~~~------------~~~~~~~~~~l~~l~~~G~--~i~l 696 (799)
T PRK11359 632 LSVNLSALHFRSNQLPNQVSDAMQAWGIDG-HQLTVEITESMM------------MEHDTEIFKRIQILRDMGV--GLSV 696 (799)
T ss_pred EEEECCHHHhCCchHHHHHHHHHHHhCcCh-HhEEEEEcCchh------------hcCHHHHHHHHHHHHHCCC--EEEE
Confidence 333333334445567888888888887642 333333222110 0345678899999999998 8888
Q ss_pred eCCCh--HHHHHHHHhCCCCCeeEEeeecCCCC---C-------hHHHHHHHhcCcEEEEecC
Q 041263 162 SNFST--KKLKDLCSYAKVKPAVNQVECHPVWQ---Q-------PALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 162 s~~~~--~~l~~~~~~~~~~~~~~q~~~~~~~~---~-------~~l~~~~~~~gi~v~a~~p 212 (318)
.+|.. ..+..+.. .+++++-+.-++... + ..++..|++.|+.+++-..
T Consensus 697 d~fg~~~~~~~~l~~---l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~via~gV 756 (799)
T PRK11359 697 DDFGTGFSGLSRLVS---LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGV 756 (799)
T ss_pred ECCCCchhhHHHHhh---CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEEEEcC
Confidence 88773 33444333 456666666544321 1 4678899999999999743
No 256
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=22.70 E-value=2.9e+02 Score=25.01 Aligned_cols=66 Identities=21% Similarity=0.311 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHH
Q 041263 95 DVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCS 174 (318)
Q Consensus 95 ~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 174 (318)
..++.+.=.+.-++ ..++++|..|..--+. ....++++.|.++.++|. +.|=+|+|..+.++.+++
T Consensus 140 G~kqrl~ia~aL~~--~P~lliLDEPt~GLDp-----------~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 140 GMKQRLSIALALLH--DPELLILDEPTSGLDP-----------ESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHHHHHHHHHHhc--CCCEEEECCCCcCCCH-----------HHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 56666666665554 3689999888654221 446789999999999996 578899999999888744
No 257
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=22.69 E-value=2.8e+02 Score=21.09 Aligned_cols=52 Identities=10% Similarity=0.135 Sum_probs=30.7
Q ss_pred eeCCChHHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCC
Q 041263 161 VSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 161 vs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 213 (318)
.+..+.+.+..++... ..+.++=.--+.....+++.+.++++||++..+..-
T Consensus 37 ~~~l~~e~l~~l~~~~-peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 37 FEDLTAAHFEALLALQ-PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred cccCCHHHHHHHHhcC-CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 3445566776666542 222222222233334578889999999999998643
No 258
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=22.66 E-value=82 Score=21.41 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=15.1
Q ss_pred HHHHHHHHhCCCHHHHH
Q 041263 229 ILQEIAGELNKSPAQVA 245 (318)
Q Consensus 229 ~l~~la~~~~~s~~q~a 245 (318)
.+.+||+++|+|..++.
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 58999999999998865
No 259
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=22.57 E-value=6.3e+02 Score=23.47 Aligned_cols=106 Identities=13% Similarity=0.027 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCC---ChHHHHH
Q 041263 95 DVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNF---STKKLKD 171 (318)
Q Consensus 95 ~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~---~~~~l~~ 171 (318)
.-+..+-+.|.+.|+++|.+-+.-........ . .... .+..+.++.+.+.+ ...+...+... +.+.++.
T Consensus 25 ~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~-~--g~~~---~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl~~ 96 (337)
T PRK08195 25 EQVRAIARALDAAGVPVIEVTHGDGLGGSSFN-Y--GFGA---HTDEEYIEAAAEVV--KQAKIAALLLPGIGTVDDLKM 96 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEeecCCCCCCcccc-C--CCCC---CCHHHHHHHHHHhC--CCCEEEEEeccCcccHHHHHH
Confidence 45556667799999999988642211100000 0 0000 23334444443332 33444443322 4556665
Q ss_pred HHHhCCCCCeeEEeeecCCCCC--hHHHHHHHhcCcEEEEec
Q 041263 172 LCSYAKVKPAVNQVECHPVWQQ--PALHEYCKSSGVHLTAYS 211 (318)
Q Consensus 172 ~~~~~~~~~~~~q~~~~~~~~~--~~l~~~~~~~gi~v~a~~ 211 (318)
+.+. ++ +.+.+..+.-..+ .+.+++++++|..+...-
T Consensus 97 a~~~-gv--d~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l 135 (337)
T PRK08195 97 AYDA-GV--RVVRVATHCTEADVSEQHIGLARELGMDTVGFL 135 (337)
T ss_pred HHHc-CC--CEEEEEEecchHHHHHHHHHHHHHCCCeEEEEE
Confidence 5543 33 4444433222222 467888999998877653
No 260
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=22.48 E-value=6.9e+02 Score=24.03 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=49.7
Q ss_pred CccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC--CeeEEEeeC-C-ChHHHHHHHHhCCCCCeeEEe
Q 041263 110 DYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSG--KARAIGVSN-F-STKKLKDLCSYAKVKPAVNQV 185 (318)
Q Consensus 110 d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvs~-~-~~~~l~~~~~~~~~~~~~~q~ 185 (318)
+..+++++-.|-.. +-|+.+.+|.+.- .+.-.|=-+ . ++..+..+++... .+++|+
T Consensus 276 e~~~i~~iEdPl~~------------------~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a--~d~v~i 335 (425)
T TIGR01060 276 EKYPIVSIEDGLSE------------------EDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGV--ANSILI 335 (425)
T ss_pred hcCCcEEEEcCCCc------------------ccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCC--CCEEEe
Confidence 34567788777542 2356666676654 554333222 2 4888888877644 366776
Q ss_pred eecCCC---CChHHHHHHHhcCcEEEE
Q 041263 186 ECHPVW---QQPALHEYCKSSGVHLTA 209 (318)
Q Consensus 186 ~~~~~~---~~~~l~~~~~~~gi~v~a 209 (318)
..+-.- +-.++...|+++|+.++.
T Consensus 336 k~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 336 KPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred cccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 654432 225788899999998554
No 261
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=22.43 E-value=5.8e+02 Score=22.98 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=26.0
Q ss_pred ccCCCccCccccccccCCcchHHHHHHHHHHc-CCCEEeCCCC
Q 041263 14 LNTGAKIPSVGLGTWKAPPGEVGEAVIAAVKA-GYRHIDCAHV 55 (318)
Q Consensus 14 ~~tg~~vs~lglG~~~~~~~~~~~~l~~Al~~-Gi~~~DtA~~ 55 (318)
+|.|.+.+.+.|. .++-.++++..++. |++.|+....
T Consensus 5 lRDG~Q~~~~~~s-----~e~K~~i~~~L~~~~Gv~~IEvg~~ 42 (280)
T cd07945 5 LRDGEQTSGVSFS-----PSEKLNIAKILLQELKVDRIEVASA 42 (280)
T ss_pred CCCcCcCCCCccC-----HHHHHHHHHHHHHHhCCCEEEecCC
Confidence 5667666665553 37777888876555 9999998754
No 262
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=22.41 E-value=4.9e+02 Score=22.21 Aligned_cols=44 Identities=9% Similarity=0.206 Sum_probs=26.2
Q ss_pred HHHHhhcCCeEecCCCCHHHHHHhhcc----cC----CCCCHHHHHHHHhhh
Q 041263 246 LRWGLQSGHSILPKSVNESRIKENFNL----FD----WSIPPKLFSRFSNIH 289 (318)
Q Consensus 246 l~~~l~~~~~vl~g~~~~~~l~enl~~----~~----~~L~~~~~~~l~~~~ 289 (318)
+++....+..+++|+.+++++.+..+. .. ..+..+.++.+....
T Consensus 97 ~~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~ 148 (206)
T PRK09140 97 IRRAVALGMVVMPGVATPTEAFAALRAGAQALKLFPASQLGPAGIKALRAVL 148 (206)
T ss_pred HHHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhhc
Confidence 344445567778888888887666421 11 145566666666554
No 263
>COG4451 RbcS Ribulose bisphosphate carboxylase small subunit [Energy production and conversion]
Probab=22.32 E-value=3.6e+02 Score=21.11 Aligned_cols=72 Identities=15% Similarity=0.064 Sum_probs=42.7
Q ss_pred CCCCCChHHHHHHHHHH---HhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC---CeeEEEee
Q 041263 89 CDLAPEDVPKALSRSLE---HLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSG---KARAIGVS 162 (318)
Q Consensus 89 ~~~~~~~i~~~ve~SL~---~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G---~ir~iGvs 162 (318)
++++...+.++|+-.|. ..|++|.|-=-...-. +... ...-+-.....+++.+|++++.+- .||-||+-
T Consensus 17 p~Ltd~qi~~QVrylL~QGykigvE~~d~rrprtgs-Wt~w----g~p~f~~~~~~evlaele~Cr~dhp~eYIRliGfD 91 (127)
T COG4451 17 PPLTDEQIAEQVRYLLSQGYKIGVEYVDDRRPRTGS-WTMW----GTPMFGAKTAGEVLAELEACRADHPGEYIRLIGFD 91 (127)
T ss_pred CcCcHHHHHHHHHHHHhCCcccceeecccCCcccce-eeec----CCccccccchHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 45566788899988887 5788887743221100 0000 000000034588999999999874 58888876
Q ss_pred CCC
Q 041263 163 NFS 165 (318)
Q Consensus 163 ~~~ 165 (318)
+-.
T Consensus 92 p~g 94 (127)
T COG4451 92 PKG 94 (127)
T ss_pred CCC
Confidence 644
No 264
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=22.21 E-value=2.7e+02 Score=23.96 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=24.0
Q ss_pred HHHHHhCCCCCeeEEeeecCCC----CChHHHHHHHhcCcEEEEe
Q 041263 170 KDLCSYAKVKPAVNQVECHPVW----QQPALHEYCKSSGVHLTAY 210 (318)
Q Consensus 170 ~~~~~~~~~~~~~~q~~~~~~~----~~~~l~~~~~~~gi~v~a~ 210 (318)
..+.+.++.+|..+-+++---+ +.+++.++|++||+.++..
T Consensus 147 VdLarlAGl~Pa~VicEi~~~dG~mar~~~~~~fa~~h~l~~iti 191 (203)
T COG0108 147 VDLARLAGLKPAGVICEIMNDDGTMARLPELEEFAKEHGLPVITI 191 (203)
T ss_pred HHHHHHcCCCCcEEEEEEeCCCccccChHHHHHHHHHcCCcEEEH
Confidence 4455566667766666642211 2256777777777776654
No 265
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=22.19 E-value=6.1e+02 Score=23.19 Aligned_cols=159 Identities=11% Similarity=0.163 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHHcC-CC--EEeCCCCCCCHHHHHHHHHhhhhcCCcCCCceEEEeccC---------CCCCCCChHHHH
Q 041263 32 PGEVGEAVIAAVKAG-YR--HIDCAHVYDNEKEVGAALKQFFSTGVVKRDEMFITSKIW---------CCDLAPEDVPKA 99 (318)
Q Consensus 32 ~~~~~~~l~~Al~~G-i~--~~DtA~~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~---------~~~~~~~~i~~~ 99 (318)
++...++++...+.+ +. .+.|-+.+-.+..|.. +++. | -+-.+.|..-.+ ...++.+.+.++
T Consensus 87 ~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~-l~~a---G--~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~a 160 (313)
T TIGR01210 87 KETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEE-LRKI---G--VNVEVAVGLETANDRIREKSINKGSTFEDFIRA 160 (313)
T ss_pred HHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHH-HHHc---C--CCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHH
Confidence 344556666665655 32 3444444445555544 4443 2 111233322211 123455667777
Q ss_pred HHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCChH---HHHHHHHhC
Q 041263 100 LSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFSTK---KLKDLCSYA 176 (318)
Q Consensus 100 ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~---~l~~~~~~~ 176 (318)
++. +++.|.. +-.+++-.+....+. ...++..+.++.+.+-+ .++.+....+. .+.++.+..
T Consensus 161 i~~-~~~~Gi~-v~~~~i~G~P~~se~-----------ea~ed~~~ti~~~~~l~--~~vs~~~l~v~~gT~l~~~~~~G 225 (313)
T TIGR01210 161 AEL-ARKYGAG-VKAYLLFKPPFLSEK-----------EAIADMISSIRKCIPVT--DTVSINPTNVQKGTLVEFLWNRG 225 (313)
T ss_pred HHH-HHHcCCc-EEEEEEecCCCCChh-----------hhHHHHHHHHHHHHhcC--CcEEEECCEEeCCCHHHHHHHcC
Confidence 764 5566876 665655553221111 23455556666666655 67777665532 455555543
Q ss_pred CCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCCCCCCCC
Q 041263 177 KVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPLGSPGSW 219 (318)
Q Consensus 177 ~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl~~g~l~ 219 (318)
..++- .++...+++..+++.+..|+. -|.|.|.-.
T Consensus 226 ~~~pp-------~lws~~e~l~e~~~~~~~~~~-d~~g~~~~r 260 (313)
T TIGR01210 226 LYRPP-------WLWSVAEVLKEAKKIGAEVLS-DPVGAGSDR 260 (313)
T ss_pred CCCCC-------CHHHHHHHHHHHHhhCCeEEe-cCCCCCCcC
Confidence 32110 011124677777777765554 677666433
No 266
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.16 E-value=4.4e+02 Score=24.34 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCe-eEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCC---CChHHHHHHHhcCcEEEEecCC
Q 041263 143 TWAAMEKLYDSGKA-RAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVW---QQPALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 143 ~~~~L~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~v~a~~pl 213 (318)
-++.+.+|++.-.+ -+.|=|-++...+..+++...+ +++|+.....- .-..+...|+.+|+.++..+.+
T Consensus 216 d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~--d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~ 288 (354)
T cd03317 216 DLIDHAELQKLLKTPICLDESIQSAEDARKAIELGAC--KIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGML 288 (354)
T ss_pred HHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCC--CEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcc
Confidence 35667777665432 2566677888888888776443 67777654432 2256788899999998765444
No 267
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=22.07 E-value=70 Score=20.31 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.1
Q ss_pred HHHHHHHhCCCHHHHHHHH
Q 041263 230 LQEIAGELNKSPAQVALRW 248 (318)
Q Consensus 230 l~~la~~~~~s~~q~al~~ 248 (318)
+++||+..|+|++-+.-.+
T Consensus 2 i~dIA~~agvS~~TVSr~l 20 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSRVL 20 (46)
T ss_dssp HHHHHHHHTSSHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 6889999999998765444
No 268
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.05 E-value=7e+02 Score=23.86 Aligned_cols=148 Identities=11% Similarity=0.082 Sum_probs=77.5
Q ss_pred CCCCHHHHHHHHHhhhhcCCcCC-CceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCC-CCCCCCC
Q 041263 55 VYDNEKEVGAALKQFFSTGVVKR-DEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKP-ETRGFEP 132 (318)
Q Consensus 55 ~YgsE~~lG~al~~~~~~~~~~R-~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~-~~~~~~~ 132 (318)
.||.+.-|-+++++..... ++ +-++|.|-... ..--+++..-+++.-++++ ++++.+|.|..... ...+
T Consensus 79 VfGg~~kL~~~I~~~~~~~--~p~~~I~V~tTC~~-~iIGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~s~~~G--- 149 (421)
T cd01976 79 VFGGDKKLAKAIDEAYELF--PLNKGISVQSECPV-GLIGDDIEAVARKASKELG---IPVVPVRCEGFRGVSQSLG--- 149 (421)
T ss_pred ecCCHHHHHHHHHHHHHhC--CCccEEEEECCChH-HHhccCHHHHHHHHHHhhC---CCEEEEeCCCccCCcccHH---
Confidence 4788888888888874433 33 45777766532 2223455555655555554 67889998876421 1000
Q ss_pred CCCCCCCHHHHHHHHHHHH-----HcCCeeEEEeeCCC--hHHHHHHHHhCCCCCeeEEee--------------ecCCC
Q 041263 133 DIMLPLCLPETWAAMEKLY-----DSGKARAIGVSNFS--TKKLKDLCSYAKVKPAVNQVE--------------CHPVW 191 (318)
Q Consensus 133 ~~~~~~~~~~~~~~L~~l~-----~~G~ir~iGvs~~~--~~~l~~~~~~~~~~~~~~q~~--------------~~~~~ 191 (318)
+......+++.|.... +.++|--||-.++. .+.+..+++..++++...-.. +|+..
T Consensus 150 ---~~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv~ 226 (421)
T cd01976 150 ---HHIANDAIRDHILGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIH 226 (421)
T ss_pred ---HHHHHHHHHHHHhccCCccCCCCCeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEE
Confidence 0000112222222211 13568888855443 466888888877644321111 11111
Q ss_pred CCh---HHHHHHH-hcCcEEEEecCCC
Q 041263 192 QQP---ALHEYCK-SSGVHLTAYSPLG 214 (318)
Q Consensus 192 ~~~---~l~~~~~-~~gi~v~a~~pl~ 214 (318)
... .+.++.+ +.|+..+...|+|
T Consensus 227 ~~~~~~~~a~~Le~~fGiP~~~~~p~G 253 (421)
T cd01976 227 CYRSMNYIARMMEEKYGIPWMEYNFFG 253 (421)
T ss_pred CcHHHHHHHHHHHHHhCCcEEecccCC
Confidence 111 2344444 5799998887763
No 269
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=22.05 E-value=7.5e+02 Score=24.16 Aligned_cols=81 Identities=14% Similarity=0.073 Sum_probs=54.7
Q ss_pred ccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCeeEEEeeCCChHHHHHHHHhCC-CCCeeEEeeec
Q 041263 111 YIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDS-GKARAIGVSNFSTKKLKDLCSYAK-VKPAVNQVECH 188 (318)
Q Consensus 111 ~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~-~~~~~~q~~~~ 188 (318)
..|++-|+.... ......+.++.+++. +. -+.+.+++++.+++.++.+. ..+.++-...
T Consensus 127 ~AD~IaL~~~s~----------------dp~~v~~~Vk~V~~~~dv--PLSIDT~dpevleaAleagad~~plI~Sat~- 187 (450)
T PRK04165 127 KLDMVALRNASG----------------DPEKFAKAVKKVAETTDL--PLILCSEDPAVLKAALEVVADRKPLLYAATK- 187 (450)
T ss_pred cCCEEEEeCCCC----------------CHHHHHHHHHHHHHhcCC--CEEEeCCCHHHHHHHHHhcCCCCceEEecCc-
Confidence 478888887543 234456666666663 44 47888999999999998863 4444443321
Q ss_pred CCCCChHHHHHHHhcCcEEEEecC
Q 041263 189 PVWQQPALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 189 ~~~~~~~l~~~~~~~gi~v~a~~p 212 (318)
+.-+++.+.|+++|..++...+
T Consensus 188 --dN~~~m~~la~~yg~pvVv~~~ 209 (450)
T PRK04165 188 --ENYEEMAELAKEYNCPLVVKAP 209 (450)
T ss_pred --chHHHHHHHHHHcCCcEEEEch
Confidence 1115788899999999988664
No 270
>PF14502 HTH_41: Helix-turn-helix domain
Probab=22.00 E-value=1.6e+02 Score=19.02 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCCH--HHHHHHHHhhcCCeEe
Q 041263 228 AILQEIAGELNKSP--AQVALRWGLQSGHSIL 257 (318)
Q Consensus 228 ~~l~~la~~~~~s~--~q~al~~~l~~~~~vl 257 (318)
+.+.++++++++|. .|-||+++-..+.+.+
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~L 38 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAIKL 38 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcEEe
Confidence 56889999999875 8899999988775444
No 271
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=21.94 E-value=1.7e+02 Score=21.77 Aligned_cols=52 Identities=19% Similarity=0.187 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeC
Q 041263 95 DVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSN 163 (318)
Q Consensus 95 ~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (318)
.....|-.=|.+.|.||.=.+.-..- .+++++.+.+++|.+.|.|..+.=+.
T Consensus 7 ~l~~~IL~hl~~~~~Dy~k~ia~~l~-----------------~~~~~v~~~l~~Le~~GLler~~g~~ 58 (92)
T PF10007_consen 7 PLDLKILQHLKKAGPDYAKSIARRLK-----------------IPLEEVREALEKLEEMGLLERVEGKT 58 (92)
T ss_pred hhHHHHHHHHHHHCCCcHHHHHHHHC-----------------CCHHHHHHHHHHHHHCCCeEEecCcc
Confidence 44556666777888888766655431 77899999999999999999888553
No 272
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=21.93 E-value=7.1e+02 Score=23.88 Aligned_cols=147 Identities=19% Similarity=0.231 Sum_probs=76.2
Q ss_pred ccccCCcchHHHHHHHHHHcCCCEEeCCCCCC-------CHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHH
Q 041263 26 GTWKAPPGEVGEAVIAAVKAGYRHIDCAHVYD-------NEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPK 98 (318)
Q Consensus 26 G~~~~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg-------sE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~ 98 (318)
|+.+.+ .++.+.+..|++.| ....|+ +-+.+.+.+-+. -.+++..+++|+++-. .+
T Consensus 75 ~~~~ts-~~a~~Av~~al~Sg-----k~N~Yaps~G~~~AR~AVAeYl~~~-l~~kl~a~DV~ltsGC----------~q 137 (447)
T KOG0259|consen 75 PCFRTS-QEAEQAVVDALRSG-----KGNGYAPSVGILPARRAVAEYLNRD-LPNKLTADDVVLTSGC----------SQ 137 (447)
T ss_pred ccccCC-HHHHHHHHHHHhcC-----CCCCcCCccccHHHHHHHHHHhhcC-CCCccCcCceEEeccc----------hH
Confidence 344444 55667777788777 234565 244455553322 1244678899998765 23
Q ss_pred HHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEee---CCC--hHHHHHHH
Q 041263 99 ALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVS---NFS--TKKLKDLC 173 (318)
Q Consensus 99 ~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs---~~~--~~~l~~~~ 173 (318)
++|-.+..|.-..-.++ |-.|.. +...+......| .||++-+= +|. .+.++.+.
T Consensus 138 AIe~~i~~LA~p~aNIL-lPrPGf----------------p~Y~~~a~~~~l----EVR~ydlLPe~~weIDL~~veal~ 196 (447)
T KOG0259|consen 138 AIELAISSLANPGANIL-LPRPGF----------------PLYDTRAIYSGL----EVRYYDLLPEKDWEIDLDGVEALA 196 (447)
T ss_pred HHHHHHHHhcCCCCcee-cCCCCC----------------chHHHhhhhcCc----eeEeecccCcccceechHHHHHhh
Confidence 45555555543333333 333332 222233322222 45655552 121 33445554
Q ss_pred HhCCCCCeeEEeeecCCCCC---------hHHHHHHHhcCcEEEEecCCC
Q 041263 174 SYAKVKPAVNQVECHPVWQQ---------PALHEYCKSSGVHLTAYSPLG 214 (318)
Q Consensus 174 ~~~~~~~~~~q~~~~~~~~~---------~~l~~~~~~~gi~v~a~~pl~ 214 (318)
+.- .+..+-.||-++- +++++.|+++|+-||+-..++
T Consensus 197 DEN----T~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~ 242 (447)
T KOG0259|consen 197 DEN----TVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYG 242 (447)
T ss_pred ccC----eeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcc
Confidence 432 2333344454442 578899999999999865543
No 273
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.89 E-value=3.4e+02 Score=23.29 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCeeEEEeeCC-ChHHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEE
Q 041263 143 TWAAMEKLYDSGKARAIGVSNF-STKKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTA 209 (318)
Q Consensus 143 ~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a 209 (318)
..+.+++++++..=-.||..+. ++++++++++... |+-.+|. -+.+++++|+++|+.++.
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA------~FivSP~-~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS------RFIVSPG-TTQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC------CEEECCC-CCHHHHHHHHHcCCCEeC
Confidence 4566666665533245888764 4778888877543 2333442 357999999999998875
No 274
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=21.79 E-value=62 Score=25.85 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=12.4
Q ss_pred HHHHHHHHHcCCCEEeC
Q 041263 36 GEAVIAAVKAGYRHIDC 52 (318)
Q Consensus 36 ~~~l~~Al~~Gi~~~Dt 52 (318)
...+..+|+.|||+||-
T Consensus 29 ~~~i~~QL~~GiR~lDl 45 (146)
T PF00388_consen 29 SWSIREQLESGIRYLDL 45 (146)
T ss_dssp SHHHHHHHHTT--EEEE
T ss_pred hHhHHHHHhccCceEEE
Confidence 35788999999999984
No 275
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=21.56 E-value=3.1e+02 Score=24.21 Aligned_cols=66 Identities=20% Similarity=0.330 Sum_probs=35.9
Q ss_pred hHHHHHHHhcCcEEEEecCCCCCCCCCcccccchHHHHHHHHHhCCC---------HHHHHHHHHhhcC--CeEecCCCC
Q 041263 194 PALHEYCKSSGVHLTAYSPLGSPGSWVKGEILKEAILQEIAGELNKS---------PAQVALRWGLQSG--HSILPKSVN 262 (318)
Q Consensus 194 ~~l~~~~~~~gi~v~a~~pl~~g~l~~~~~~~~~~~l~~la~~~~~s---------~~q~al~~~l~~~--~~vl~g~~~ 262 (318)
.++.++|+++||.+++- ||. .+.+..+ +++++. ..---|+.+.+.+ ..+-.|+++
T Consensus 59 ~~L~~~~~~~gi~f~st-pfd------------~~s~d~l-~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~st 124 (241)
T PF03102_consen 59 KELFEYCKELGIDFFST-PFD------------EESVDFL-EELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMST 124 (241)
T ss_dssp HHHHHHHHHTT-EEEEE-E-S------------HHHHHHH-HHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--
T ss_pred HHHHHHHHHcCCEEEEC-CCC------------HHHHHHH-HHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCC
Confidence 47889999999988763 441 2223333 334321 1122455555554 555679999
Q ss_pred HHHHHHhhccc
Q 041263 263 ESRIKENFNLF 273 (318)
Q Consensus 263 ~~~l~enl~~~ 273 (318)
.+++++.++.+
T Consensus 125 l~EI~~Av~~~ 135 (241)
T PF03102_consen 125 LEEIERAVEVL 135 (241)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988776
No 276
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=21.43 E-value=5.4e+02 Score=22.30 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=42.8
Q ss_pred HHHHHHHHcCCeeEEEeeC---CC-----hHHHHHHHHhCCCCCeeEEeeec-CCCCCh-----------HHHHHHHhcC
Q 041263 145 AAMEKLYDSGKARAIGVSN---FS-----TKKLKDLCSYAKVKPAVNQVECH-PVWQQP-----------ALHEYCKSSG 204 (318)
Q Consensus 145 ~~L~~l~~~G~ir~iGvs~---~~-----~~~l~~~~~~~~~~~~~~q~~~~-~~~~~~-----------~l~~~~~~~g 204 (318)
+.|+...+.| ...+.+.. +. +..+.++++..+..+...+...+ +..... ..++.|++.|
T Consensus 19 ~~l~~~~~~G-~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg 97 (274)
T COG1082 19 EILRKAAELG-FDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELG 97 (274)
T ss_pred HHHHHHHHhC-CCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcC
Confidence 4566666777 66677763 22 35667777777776666555555 344332 2788899999
Q ss_pred cEEEEecCC
Q 041263 205 VHLTAYSPL 213 (318)
Q Consensus 205 i~v~a~~pl 213 (318)
+.++...+-
T Consensus 98 ~~~vv~~~g 106 (274)
T COG1082 98 AKVVVVHPG 106 (274)
T ss_pred CCeEEeecc
Confidence 886665443
No 277
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=21.33 E-value=6.3e+02 Score=24.16 Aligned_cols=66 Identities=18% Similarity=0.078 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEee-----CC-----ChHHHHHHHHhCC-CC-CeeEE-eeecCCCCChHHHHHHHhcC
Q 041263 138 LCLPETWAAMEKLYDSGKARAIGVS-----NF-----STKKLKDLCSYAK-VK-PAVNQ-VECHPVWQQPALHEYCKSSG 204 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~G~ir~iGvs-----~~-----~~~~l~~~~~~~~-~~-~~~~q-~~~~~~~~~~~l~~~~~~~g 204 (318)
.+++.+++.++.+++.|. +.|-+. ++ +...+.++++... .+ ..... ...++..-..++++.+++.|
T Consensus 164 r~~e~Vv~Ei~~l~~~g~-k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~ 242 (430)
T TIGR01125 164 RPIEEILKEAERLVDQGV-KEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIYWIRMHYLYPDELTDDVIDLMAEGP 242 (430)
T ss_pred cCHHHHHHHHHHHHHCCC-cEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHhhCC
Confidence 668999999999999873 444432 22 1234444444321 11 11111 11223334578999988875
No 278
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=21.26 E-value=4e+02 Score=24.35 Aligned_cols=216 Identities=17% Similarity=0.090 Sum_probs=109.4
Q ss_pred cchHHHHHHHHHHcCCCEEeCCCCCC-----CHHHHHHHHHhhhhcC---------CcCCCceEEEeccCCC--------
Q 041263 32 PGEVGEAVIAAVKAGYRHIDCAHVYD-----NEKEVGAALKQFFSTG---------VVKRDEMFITSKIWCC-------- 89 (318)
Q Consensus 32 ~~~~~~~l~~Al~~Gi~~~DtA~~Yg-----sE~~lG~al~~~~~~~---------~~~R~~~~i~tK~~~~-------- 89 (318)
++..+++-...+++|-+.++|+..-. +|+.-.+-++.+.... -+-.+...|..-+++.
T Consensus 42 peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~Ey 121 (300)
T COG2040 42 PEIVRNVHADFLRAGADIITTATYQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALADEY 121 (300)
T ss_pred HHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcChhh
Confidence 45566666777899999999875322 2321111222211000 0123333355555441
Q ss_pred --C--CCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEeeCCC
Q 041263 90 --D--LAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVSNFS 165 (318)
Q Consensus 90 --~--~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 165 (318)
+ .+.+.+.+-...-++.|.-.-+|++.+-..... ...+.+.++++++ +|=-+|+++-.+
T Consensus 122 ~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i--------------~Ea~Aiv~l~~~~---s~p~wISfT~~d 184 (300)
T COG2040 122 RGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNI--------------TEAEAIVQLVQEF---SKPAWISFTLND 184 (300)
T ss_pred cCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCCh--------------HHHHHHHHHHHHh---CCceEEEEEeCC
Confidence 1 233434444555566666666999988764332 2234445555555 888889998763
Q ss_pred h------HHHHHHHHhCCC--CCeeEEeeecCCCCChHHHHHH--HhcCcEEEEecCCCCCC-CCCcccccchHHHHHHH
Q 041263 166 T------KKLKDLCSYAKV--KPAVNQVECHPVWQQPALHEYC--KSSGVHLTAYSPLGSPG-SWVKGEILKEAILQEIA 234 (318)
Q Consensus 166 ~------~~l~~~~~~~~~--~~~~~q~~~~~~~~~~~l~~~~--~~~gi~v~a~~pl~~g~-l~~~~~~~~~~~l~~la 234 (318)
- ..+.++.....- .+...-+++..+++-..+++.. ...|+++++|-- +|. ..........+. .
T Consensus 185 ~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~~~~a~i~~l~~~~~~~piivYPN--SGe~~d~~~k~w~~p~--~-- 258 (300)
T COG2040 185 DTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPN--SGEQYDPAGKTWHGPA--L-- 258 (300)
T ss_pred CCccCCCccHHHHHHHHhcCcchhheeeccCChhhhHHHHHHHHhcCCCCceEEcCC--cccccCcCCCcCCCCC--C--
Confidence 1 233444443321 3344555554454446777777 445888999854 332 111111110000 0
Q ss_pred HHhCCCHHHHHHHHHhhcCCeEecCC--CCHHHHHHhhccc
Q 041263 235 GELNKSPAQVALRWGLQSGHSILPKS--VNESRIKENFNLF 273 (318)
Q Consensus 235 ~~~~~s~~q~al~~~l~~~~~vl~g~--~~~~~l~enl~~~ 273 (318)
.--+-.+++..|+-. |..++-|. +++.|+.+..+++
T Consensus 259 --~~~~~~~~a~~w~~~-GA~iiGGCCrt~p~~I~ei~~~~ 296 (300)
T COG2040 259 --SADSYSTLAKSWVEA-GARIIGGCCRTGPAHIAEIAKAL 296 (300)
T ss_pred --chhHHHHHHHHHHhc-ccceeeeccCCChHHHHHHHHHH
Confidence 000123456666543 45555554 6777777765544
No 279
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=21.21 E-value=1.6e+02 Score=22.99 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=30.7
Q ss_pred ChHHHHHHHHhCC-CCCeeEEeeecCCCCChHHHHHHHhcCcEEEEecCC
Q 041263 165 STKKLKDLCSYAK-VKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYSPL 213 (318)
Q Consensus 165 ~~~~l~~~~~~~~-~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~pl 213 (318)
++++++.+++.+. +.+.++-.-...-.....+.+.|+..||++-.|+.=
T Consensus 56 t~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst~ 105 (127)
T COG3737 56 TPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMSTG 105 (127)
T ss_pred CHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccch
Confidence 3566666666654 222333333333344578999999999999888754
No 280
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=21.16 E-value=6.8e+02 Score=23.38 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=56.6
Q ss_pred CccceEe-ecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-cCC---eeEEEee--CCChHHHHHHHHhCCC----
Q 041263 110 DYIDLYL-IHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYD-SGK---ARAIGVS--NFSTKKLKDLCSYAKV---- 178 (318)
Q Consensus 110 d~iDl~~-lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-~G~---ir~iGvs--~~~~~~l~~~~~~~~~---- 178 (318)
.++||.+ ||.++............. ..+.++++++.+..+ .|. |+++=+. |.+.+++.++.+....
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~---~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~ 279 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKR---FPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSW 279 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCcccc---ccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhcccc
Confidence 3577754 777654332111100001 456777777666665 343 3444443 4456677776665542
Q ss_pred --CCeeEEeeecCCCCC------------hHHHHHHHhcCcEEEEecCCCC
Q 041263 179 --KPAVNQVECHPVWQQ------------PALHEYCKSSGVHLTAYSPLGS 215 (318)
Q Consensus 179 --~~~~~q~~~~~~~~~------------~~l~~~~~~~gi~v~a~~pl~~ 215 (318)
...++-++||++... ....+..+++|+.+......|.
T Consensus 280 ~~~~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 330 (347)
T PRK14453 280 EHLYHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGS 330 (347)
T ss_pred CCcceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 345777777775321 2345567788888888776643
No 281
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=21.15 E-value=1.4e+02 Score=22.36 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=33.3
Q ss_pred eCCChHHHHHHHHhCCCCCeeEEeeecCCC---CChHHHHHHHhcCcEEEEecC
Q 041263 162 SNFSTKKLKDLCSYAKVKPAVNQVECHPVW---QQPALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 162 s~~~~~~l~~~~~~~~~~~~~~q~~~~~~~---~~~~l~~~~~~~gi~v~a~~p 212 (318)
+.++...+.++++...+ +++|......- +-..+.++|+++|+.+..++.
T Consensus 3 ~~~~~~~~~~li~~~a~--d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAV--DIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTTSC--SEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcCCC--CEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 34667777777775443 67776643332 225688999999999999986
No 282
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=21.02 E-value=2.5e+02 Score=21.95 Aligned_cols=52 Identities=27% Similarity=0.288 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeEEEee
Q 041263 97 PKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARAIGVS 162 (318)
Q Consensus 97 ~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs 162 (318)
+..+.+.|+.+....+|.+++...++.. ....+....++.|.+.| |+-+-++
T Consensus 51 Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~-------------R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (148)
T smart00857 51 RPGLQRLLADLRAGDIDVLVVYKLDRLG-------------RSLRDLLALLELLEKKG-VRLVSVT 102 (148)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhh-------------CcHHHHHHHHHHHHHCC-CEEEECc
Confidence 4577777777776778999999887764 45567788888888877 5555443
No 283
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=20.98 E-value=1.2e+02 Score=27.66 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHHHhCCCcc--ceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCeeE
Q 041263 93 PEDVPKALSRSLEHLQLDYI--DLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSGKARA 158 (318)
Q Consensus 93 ~~~i~~~ve~SL~~Lg~d~i--Dl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G~ir~ 158 (318)
.+...+.+.+.+++||+..- ..+.=+.| .....+++.+.+|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~-----------------~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP-----------------EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH-----------------HHHHHHHHHHHHHHHCCCEEe
Confidence 35778889999999998532 22222222 335788999999999999764
No 284
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=20.91 E-value=7.1e+02 Score=23.44 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHHHHHhCCCccceEeecCCCCCC-CCCCCCCCC
Q 041263 55 VYDNEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTK-PETRGFEPD 133 (318)
Q Consensus 55 ~YgsE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~-~~~~~~~~~ 133 (318)
.||.+..|-+++++..... +.+=++|.|-.. ...--+++..-+++.-++.+ +.++.+|.|.... ...
T Consensus 68 V~Gg~~~L~~~i~~~~~~~--~P~~i~v~~tC~-~~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~------ 135 (406)
T cd01967 68 VFGGEKKLKKAIKEAYERF--PPKAIFVYSTCP-TGLIGDDIEAVAKEASKELG---IPVIPVNCEGFRGVSQS------ 135 (406)
T ss_pred eeCcHHHHHHHHHHHHHhC--CCCEEEEECCCc-hhhhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCccc------
Confidence 4677888888888764322 233355655542 23333555555555444544 7899999886543 110
Q ss_pred CCCCCCHHHHHHHHHHHH---------HcCCeeEEEeeCCC--hHHHHHHHHhCCCCC
Q 041263 134 IMLPLCLPETWAAMEKLY---------DSGKARAIGVSNFS--TKKLKDLCSYAKVKP 180 (318)
Q Consensus 134 ~~~~~~~~~~~~~L~~l~---------~~G~ir~iGvs~~~--~~~l~~~~~~~~~~~ 180 (318)
.-...++++|-+.. +.+.|--||..++. .+++..+++..++++
T Consensus 136 ----~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~ 189 (406)
T cd01967 136 ----LGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRV 189 (406)
T ss_pred ----HHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEE
Confidence 22344555555443 23568888876653 467788888776533
No 285
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.81 E-value=6.5e+02 Score=22.94 Aligned_cols=89 Identities=9% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCeeEEEeeCCChHHHHHHHHhC---CCCCeeEEeeecCCCCChHHHHH----HHhc-CcEEEEe-c
Q 041263 141 PETWAAMEKLYDSGKARAIGVSNFSTKKLKDLCSYA---KVKPAVNQVECHPVWQQPALHEY----CKSS-GVHLTAY-S 211 (318)
Q Consensus 141 ~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~---~~~~~~~q~~~~~~~~~~~l~~~----~~~~-gi~v~a~-~ 211 (318)
.+++++..+..+...--.+|++..+..+..++.+.+ +.+-.++..++.....+++++++ |... +++|+.| .
T Consensus 64 ~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~ 143 (309)
T cd00952 64 QAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYAN 143 (309)
T ss_pred HHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcC
Q ss_pred CCCCCCCCCcccccchHHHHHHHH
Q 041263 212 PLGSPGSWVKGEILKEAILQEIAG 235 (318)
Q Consensus 212 pl~~g~l~~~~~~~~~~~l~~la~ 235 (318)
|-..| ..+..+.+.++++
T Consensus 144 P~~tg------~~l~~~~l~~L~~ 161 (309)
T cd00952 144 PEAFK------FDFPRAAWAELAQ 161 (309)
T ss_pred chhcC------CCCCHHHHHHHhc
No 286
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=20.77 E-value=7.3e+02 Score=24.62 Aligned_cols=98 Identities=14% Similarity=0.220 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC----------CeeEEEeeCC
Q 041263 95 DVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSG----------KARAIGVSNF 164 (318)
Q Consensus 95 ~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G----------~ir~iGvs~~ 164 (318)
.-+..+-+.|.++|+++|.+-+ |... .+-+++++.+.+.+ ..+-.+++..
T Consensus 106 eeKi~Ia~~L~~~GVd~IEvG~---Pa~s-----------------~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~ 165 (503)
T PLN03228 106 PQKLEIARQLAKLRVDIMEVGF---PGSS-----------------EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARC 165 (503)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC---CCCC-----------------HHHHHHHHHHHHhcccccccccccceEEeeeccc
Confidence 4567778889999999888854 4322 22234444444332 1334466666
Q ss_pred ChHHHHHHHHhC---CCCCeeEEeeecCCC------CC--------hHHHHHHHhcCcEEEEecC
Q 041263 165 STKKLKDLCSYA---KVKPAVNQVECHPVW------QQ--------PALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 165 ~~~~l~~~~~~~---~~~~~~~q~~~~~~~------~~--------~~l~~~~~~~gi~v~a~~p 212 (318)
....++.+++.. +.+-..+-+..+... .. .+.+++++++|...+.+++
T Consensus 166 ~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 166 KKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred CHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 666777776642 111111121222111 11 3578889999986556555
No 287
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=20.53 E-value=2.1e+02 Score=25.27 Aligned_cols=30 Identities=23% Similarity=0.140 Sum_probs=18.3
Q ss_pred HHHHHHcCCCEEeCCCCCCCHHHHHHHHHhh
Q 041263 39 VIAAVKAGYRHIDCAHVYDNEKEVGAALKQF 69 (318)
Q Consensus 39 l~~Al~~Gi~~~DtA~~YgsE~~lG~al~~~ 69 (318)
...|.+.|++.||. .||.+|+..=+.|.++
T Consensus 202 ~~~A~~~gi~li~~-gH~~sE~~~~~~la~~ 231 (249)
T TIGR00486 202 AHLARELGLNVIDA-GHYATERGGLRKLMED 231 (249)
T ss_pred HHHHHHCCCEEEEc-CcHHHHHHHHHHHHHH
Confidence 44567788888885 4565665544444444
No 288
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=20.48 E-value=3.8e+02 Score=24.16 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=35.7
Q ss_pred EEEeeCCCh---HHHHHHHHhCCCCCeeEEeeecCCCCChHHHHHHHhcCcEEEEec
Q 041263 158 AIGVSNFST---KKLKDLCSYAKVKPAVNQVECHPVWQQPALHEYCKSSGVHLTAYS 211 (318)
Q Consensus 158 ~iGvs~~~~---~~l~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~gi~v~a~~ 211 (318)
.|+.|-|-. ..+.+.+..++- .+.-+..||+..+.++..+..+.||.|.||.
T Consensus 45 rIa~cLHle~kTA~L~~tL~a~GA--eV~~~~sNplSTQDdvaAAL~~~Gi~V~A~~ 99 (268)
T PF05221_consen 45 RIAGCLHLEAKTAVLAETLKALGA--EVRWTGSNPLSTQDDVAAALAEEGIPVFAWK 99 (268)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTE--EEEEEESSTTT--HHHHHHHHHTTEEEEE-T
T ss_pred EEEEEEechHHHHHHHHHHHHcCC--eEEEecCCCcccchHHHHHhccCCceEEEeC
Confidence 588888852 344555555553 5666788999999999999999999999985
No 289
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=20.42 E-value=4.8e+02 Score=24.24 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=37.5
Q ss_pred eeEEEeeCCChHHHHHHHHhCCCCCeeEEeeecCCCCC---hHHHHHHHhcCcEEEEecCCC
Q 041263 156 ARAIGVSNFSTKKLKDLCSYAKVKPAVNQVECHPVWQQ---PALHEYCKSSGVHLTAYSPLG 214 (318)
Q Consensus 156 ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~---~~l~~~~~~~gi~v~a~~pl~ 214 (318)
++..-+...+++.+++++.. +.+..++..+.||.... .++.+.|+++|+.++.=..++
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred ceEEEECCCCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 44444555567777766543 34445555566775433 568889999999988876663
No 290
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=20.42 E-value=7.1e+02 Score=23.25 Aligned_cols=84 Identities=15% Similarity=0.119 Sum_probs=52.4
Q ss_pred HHHHHHcC-CeeEEEeeCCChHHHHHHHHhCC-------------CCCeeEEeeec-CCCCChHHHHHHHhcCcEEEEec
Q 041263 147 MEKLYDSG-KARAIGVSNFSTKKLKDLCSYAK-------------VKPAVNQVECH-PVWQQPALHEYCKSSGVHLTAYS 211 (318)
Q Consensus 147 L~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~-------------~~~~~~q~~~~-~~~~~~~l~~~~~~~gi~v~a~~ 211 (318)
+..+.+.. .++-+|+++-+.+..+++.+..+ ++.+++-+.-. +-....++...|-++|+.|++=.
T Consensus 18 ~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EK 97 (343)
T TIGR01761 18 LAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEH 97 (343)
T ss_pred HHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcC
Confidence 33444444 57778888888777666655433 23333333211 11223678888889999999999
Q ss_pred CCCCCCCCCcccccchHHHHHHHHHhCC
Q 041263 212 PLGSPGSWVKGEILKEAILQEIAGELNK 239 (318)
Q Consensus 212 pl~~g~l~~~~~~~~~~~l~~la~~~~~ 239 (318)
|++ ....+++.++|++.|+
T Consensus 98 Pla---------~~Ea~el~~~A~~~g~ 116 (343)
T TIGR01761 98 PLH---------PRDIQDLLRLAERQGR 116 (343)
T ss_pred CCC---------HHHHHHHHHHHHHcCC
Confidence 994 2344667788887764
No 291
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=20.25 E-value=1.2e+03 Score=25.92 Aligned_cols=90 Identities=11% Similarity=-0.043 Sum_probs=59.0
Q ss_pred HhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc-CCe--eEEEeeCCChHHHHHHHHhCCCCCee
Q 041263 106 HLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDS-GKA--RAIGVSNFSTKKLKDLCSYAKVKPAV 182 (318)
Q Consensus 106 ~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-G~i--r~iGvs~~~~~~l~~~~~~~~~~~~~ 182 (318)
.-|.+.||+=.=. + . .+..+.++.+..+.+. -.+ --|-+-++.++.++..++...-++.+
T Consensus 379 e~GA~iIDVn~~~-~-----~-----------vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~II 441 (1178)
T TIGR02082 379 ENGAQILDINVDY-G-----M-----------LDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIV 441 (1178)
T ss_pred HCCCCEEEECCCC-C-----C-----------CCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEE
Confidence 5688899987421 0 0 3445556555555543 212 23778888999999999986555666
Q ss_pred EEeeecCCCCC-hHHHHHHHhcCcEEEEecC
Q 041263 183 NQVECHPVWQQ-PALHEYCKSSGVHLTAYSP 212 (318)
Q Consensus 183 ~q~~~~~~~~~-~~l~~~~~~~gi~v~a~~p 212 (318)
|-+..--.... .++++.++++|..++++.-
T Consensus 442 NsIs~~~g~~~~~~~~~l~~~yga~vV~m~~ 472 (1178)
T TIGR02082 442 NSISLKDGEERFIETAKLIKEYGAAVVVMAF 472 (1178)
T ss_pred EeCCCCCCCccHHHHHHHHHHhCCCEEEEec
Confidence 66554222222 4799999999999999863
No 292
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=20.16 E-value=5.6e+02 Score=21.97 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=30.6
Q ss_pred HHHHHHhhcCC---eEecCCCCHHHHHHhhc--ccCCCCCHHHHHHHHhh
Q 041263 244 VALRWGLQSGH---SILPKSVNESRIKENFN--LFDWSIPPKLFSRFSNI 288 (318)
Q Consensus 244 ~al~~~l~~~~---~vl~g~~~~~~l~enl~--~~~~~L~~~~~~~l~~~ 288 (318)
-..++.-.++. ...+|.+++.|+.+.+. +--..++++.++++...
T Consensus 146 ~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~~ 195 (211)
T cd00956 146 EIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPPDVLEQLLKH 195 (211)
T ss_pred HHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCHHHHHHHhcC
Confidence 34444445553 47789999999998643 33348999888887553
No 293
>PTZ00413 lipoate synthase; Provisional
Probab=20.12 E-value=7.7e+02 Score=23.59 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=84.9
Q ss_pred CCcchHHHHHHHHHHcCCCEEeCCCCCC------CHHHHHHHHHhhhhcCCcCCCceEEEeccCCCCCCCChHHHHHHHH
Q 041263 30 APPGEVGEAVIAAVKAGYRHIDCAHVYD------NEKEVGAALKQFFSTGVVKRDEMFITSKIWCCDLAPEDVPKALSRS 103 (318)
Q Consensus 30 ~~~~~~~~~l~~Al~~Gi~~~DtA~~Yg------sE~~lG~al~~~~~~~~~~R~~~~i~tK~~~~~~~~~~i~~~ve~S 103 (318)
.++++..+.=+++.+.|++|+=.+..-+ --..+.++++.. . ....++.|..=++....+. ++
T Consensus 177 lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~I---r-~~~p~~~IevligDf~g~~--------e~ 244 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELI---K-ESNPELLLEALVGDFHGDL--------KS 244 (398)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHH---H-ccCCCCeEEEcCCccccCH--------HH
Confidence 4667777777777889998763333221 123345555553 0 0113455555553221122 34
Q ss_pred HHHhCCCccceEeecCCCCCCCCCCCCCCCCCC-C-CCHHHHHHHHHHHHHc--CCee-----EEEeeCCChHHHHHHHH
Q 041263 104 LEHLQLDYIDLYLIHWPFRTKPETRGFEPDIML-P-LCLPETWAAMEKLYDS--GKAR-----AIGVSNFSTKKLKDLCS 174 (318)
Q Consensus 104 L~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~-~-~~~~~~~~~L~~l~~~--G~ir-----~iGvs~~~~~~l~~~~~ 174 (318)
|++|.---+|.| -||.+....... .+. + -...+.|+.|+..++. |.|. -+|+.--..+.++.+.+
T Consensus 245 l~~L~eAG~dvy-nHNLETv~rLyp-----~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~d 318 (398)
T PTZ00413 245 VEKLANSPLSVY-AHNIECVERITP-----YVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRD 318 (398)
T ss_pred HHHHHhcCCCEE-ecccccCHhHHH-----HHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHHH
Confidence 444433345544 455443221100 111 0 3568889999988874 3332 35655533344443433
Q ss_pred hCCCCCeeEEe-ee-cCCCC----------C--hHHHHHHHhcCcEEEEecCCC
Q 041263 175 YAKVKPAVNQV-EC-HPVWQ----------Q--PALHEYCKSSGVHLTAYSPLG 214 (318)
Q Consensus 175 ~~~~~~~~~q~-~~-~~~~~----------~--~~l~~~~~~~gi~v~a~~pl~ 214 (318)
.....++++.+ +| .|-.. + ..+-+.+.+.|...++-+||-
T Consensus 319 LrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlV 372 (398)
T PTZ00413 319 LRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLV 372 (398)
T ss_pred HHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCcc
Confidence 33444455544 22 11111 1 346667888999999999984
No 294
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=20.10 E-value=7.1e+02 Score=23.39 Aligned_cols=101 Identities=19% Similarity=0.212 Sum_probs=62.2
Q ss_pred CCCceEEEeccCC---------------CCCCCChHHHHHHHHHHHhCCC---ccceEeecCCCCCCCCCCCCCCCCCCC
Q 041263 76 KRDEMFITSKIWC---------------CDLAPEDVPKALSRSLEHLQLD---YIDLYLIHWPFRTKPETRGFEPDIMLP 137 (318)
Q Consensus 76 ~R~~~~i~tK~~~---------------~~~~~~~i~~~ve~SL~~Lg~d---~iDl~~lH~p~~~~~~~~~~~~~~~~~ 137 (318)
.|.-+.|+|-+|. .+.+...|..|+....++++.. .+.=+.+-.-.++.
T Consensus 99 ~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl------------- 165 (349)
T COG0820 99 DRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPL------------- 165 (349)
T ss_pred CCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchh-------------
Confidence 4666888888864 2456788999999999999864 34433333322211
Q ss_pred CCHHHHHHHHHHHHHc-CC---eeEEEeeCCC-hHHHHHHHHhCCCCCeeEEeeecCCC
Q 041263 138 LCLPETWAAMEKLYDS-GK---ARAIGVSNFS-TKKLKDLCSYAKVKPAVNQVECHPVW 191 (318)
Q Consensus 138 ~~~~~~~~~L~~l~~~-G~---ir~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~~~~~ 191 (318)
.....+..+++-+.+. |. .|+|-+|+-. ...+.++.+. ..-+..++.++..+
T Consensus 166 ~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~--~~~v~LAiSLHa~n 222 (349)
T COG0820 166 LNLDNVVKALEIINDDEGLGLSKRRITVSTSGIVPRIRKLADE--QLGVALAISLHAPN 222 (349)
T ss_pred hhHHHHHHHHHhhcCcccccccceEEEEecCCCchhHHHHHhh--cCCeEEEEecCCCC
Confidence 4456788888888744 22 2778888877 5566666542 11234455554443
No 295
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=20.09 E-value=6.4e+02 Score=22.59 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--cCCeeEE-EeeCCCh
Q 041263 90 DLAPEDVPKALSRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYD--SGKARAI-GVSNFST 166 (318)
Q Consensus 90 ~~~~~~i~~~ve~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~--~G~ir~i-Gvs~~~~ 166 (318)
..+.+.+++.++..++.+| +|-+++-.-...... .+.+|-.+.++..++ .|++.=| |++..+.
T Consensus 17 ~iD~~~~~~~i~~l~~~~G---v~gi~~~GstGE~~~-----------Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~ 82 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQG---VDGLYVNGSTGEGFL-----------LSVEERKQIAEIVAEAAKGKVTLIAHVGSLNL 82 (288)
T ss_pred CCCHHHHHHHHHHHHhcCC---CCEEEECcCCcCccc-----------CCHHHHHHHHHHHHHHhCCCCeEEeccCCCCH
Q ss_pred HHHHHHHHhC---CCCCeeEEeeecCCCCChHHHHH----HHhc-CcEEEEe-cCCCCCCCCCcccccchHHHHHHHH
Q 041263 167 KKLKDLCSYA---KVKPAVNQVECHPVWQQPALHEY----CKSS-GVHLTAY-SPLGSPGSWVKGEILKEAILQEIAG 235 (318)
Q Consensus 167 ~~l~~~~~~~---~~~~~~~q~~~~~~~~~~~l~~~----~~~~-gi~v~a~-~pl~~g~l~~~~~~~~~~~l~~la~ 235 (318)
.+..++.+.+ +.+-.++..++..-..+++++++ |+.. +++|+.| .|...| ..+..+.+.++++
T Consensus 83 ~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg------~~l~~~~~~~L~~ 154 (288)
T cd00954 83 KESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTG------VNLTLEQFLELFE 154 (288)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccC------CCCCHHHHHHHhc
No 296
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.08 E-value=2.1e+02 Score=20.60 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=35.4
Q ss_pred HHHHHHhCCCccceEeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CeeEEEeeCCC-hHHHHHHHHh
Q 041263 101 SRSLEHLQLDYIDLYLIHWPFRTKPETRGFEPDIMLPLCLPETWAAMEKLYDSG-KARAIGVSNFS-TKKLKDLCSY 175 (318)
Q Consensus 101 e~SL~~Lg~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~-~~~l~~~~~~ 175 (318)
++.++.++...+|++++-..... ....+.++.+++.+ .++-|-+++.. .....++++.
T Consensus 33 ~~~~~~~~~~~~d~iiid~~~~~-----------------~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~ 92 (112)
T PF00072_consen 33 EEALELLKKHPPDLIIIDLELPD-----------------GDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRA 92 (112)
T ss_dssp HHHHHHHHHSTESEEEEESSSSS-----------------SBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHT
T ss_pred HHHHHHhcccCceEEEEEeeecc-----------------ccccccccccccccccccEEEecCCCCHHHHHHHHHC
Confidence 34444455555999998753221 23445666666665 78888888665 4556666544
Done!