BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041264
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:asn170asp Mutant
Length = 258
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 34 APHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIANPVSGIINIDYHGP 83
A ++ N N KI+ G +E ++ NPV I +DY+ P
Sbjct: 93 ASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYQIELDYYSP 142
>pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163-178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
pdb|1OME|B Chain B, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163-178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
Length = 258
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 34 APHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIANPVSGIINIDYHGP 83
A ++ N N KI+ G +E ++ NPV I ++Y+ P
Sbjct: 93 ASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSP 142
>pdb|1ALQ|A Chain A, Circularly Permuted Beta-Lactamase From Staphylococcus
Aureus Pc1
Length = 266
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 34 APHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIANPVSGIINIDYHGP 83
A ++ N N KI+ G +E ++ NPV I ++Y+ P
Sbjct: 138 ASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSP 187
>pdb|1PIO|A Chain A, An Engineered Staphylococcus Aureus Pc1 Beta-Lactamase
That Hydrolyses Third Generation Cephalosporins
pdb|1PIO|B Chain B, An Engineered Staphylococcus Aureus Pc1 Beta-Lactamase
That Hydrolyses Third Generation Cephalosporins
Length = 257
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 34 APHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIANPVSGIINIDYHGP 83
A ++ N N KI+ G +E ++ NPV I ++Y+ P
Sbjct: 93 ASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSP 142
>pdb|1DJB|A Chain A, Structure Of Beta-Lactamase Precursor, S70a Mutant, At
298k
pdb|1DJC|A Chain A, Structure Of Beta-Lactamase Precursor, S70a Mutant, At
120k
Length = 257
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 34 APHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIANPVSGIINIDYHGP 83
A ++ N N KI+ G +E ++ NPV I ++Y+ P
Sbjct: 92 ASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSP 141
>pdb|1BLC|A Chain A, Inhibition Of Beta-Lactamase By Clavulanate: Trapped
Intermediates In Cryocrystallographic Studies
pdb|1BLH|A Chain A, Structure Of A Phosphonate-Inhibited Beta-Lactamase. An
Analog Of The Tetrahedral Transition State(Slash)
Intermediate Of Beta-Lactam Hydrolysis
pdb|3BLM|A Chain A, Refined Crystal Structure Of Beta-Lactamase From
Staphylococcus Aureus Pc1 At 2.0
Length = 257
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 34 APHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIANPVSGIINIDYHGP 83
A ++ N N KI+ G +E ++ NPV I ++Y+ P
Sbjct: 92 ASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSP 141
>pdb|1BLP|A Chain A, Structural Basis For The Inactivation Of The P54 Mutant Of
Beta- Lactamase From Staphylococcus Aureus Pc1
Length = 257
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 34 APHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIANPVSGIINIDYHGP 83
A ++ N N KI+ G +E ++ NPV I ++Y+ P
Sbjct: 92 ASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSP 141
>pdb|1DJA|A Chain A, Structure Of Beta-Lactamase Precursor, K73h Mutant, At
298k
Length = 258
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 34 APHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIANPVSGIINIDYHGP 83
A ++ N N KI+ G +E ++ NPV I ++Y+ P
Sbjct: 93 ASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSP 142
>pdb|1KGF|A Chain A, Structure Of Beta-Lactamase Asn 170 Gln Mutant
Length = 258
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 34 APHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIANPVSGIINIDYHGP 83
A ++ N N KI+ G +E ++ NPV I + Y+ P
Sbjct: 93 ASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELQYYSP 142
>pdb|1GHI|A Chain A, Structure Of Beta-Lactamase Glu166asp:asn170gln Mutant
pdb|1GHM|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Cephaloridine
pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Benzylpenicillin
Length = 258
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 34 APHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIANPVSGIINIDYHGP 83
A ++ N N KI+ G +E ++ NPV I + Y+ P
Sbjct: 93 ASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYDIELQYYSP 142
>pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron-
Sulfur Cluster Biosynthesis
Length = 154
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 14 NNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCPST 57
N +V ++ + ++ N A H GN V VK+ C CPS+
Sbjct: 8 NVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSS 51
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|B Chain B, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|C Chain C, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
Length = 358
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 27 CTEARNAAPHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIANPVS 73
C EA N A W K+ CS ST+ S + F +I P S
Sbjct: 308 CAEAINFATPRWIDYG---KMASQCSCGESTVTFSMDPFVRIVQPES 351
>pdb|3HQ9|A Chain A, Ccpa From G. Sulfurreducens, S134p Variant
pdb|3HQ9|B Chain B, Ccpa From G. Sulfurreducens, S134p Variant
Length = 345
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 1 PRCDAEAAGDALWNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCPSTIDL 60
PR +A ++++N W + +A+ P NN ++V + P + L
Sbjct: 99 PR-NAPTVLNSVFNTAQFWDGRAKDLAEQAKGPVQAPVEMNNTPDQVVKTLNSIPDYVAL 157
Query: 61 SREAFTQIANPVS 73
++AF +PV+
Sbjct: 158 FKKAFPGEKDPVT 170
>pdb|3HQ8|A Chain A, Ccpa From G. Sulfurreducens S134pV135K VARIANT
pdb|3HQ8|B Chain B, Ccpa From G. Sulfurreducens S134pV135K VARIANT
Length = 345
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 1 PRCDAEAAGDALWNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCPSTIDL 60
PR +A ++++N W + +A+ P NN ++V + P + L
Sbjct: 99 PR-NAPTVLNSVFNTAQFWDGRAKDLAEQAKGPVQAPKEMNNTPDQVVKTLNSIPDYVAL 157
Query: 61 SREAFTQIANPVS 73
++AF +PV+
Sbjct: 158 FKKAFPGEKDPVT 170
>pdb|2JNV|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like
Protein From Oryza Sativa
Length = 91
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 32 NAAPHPWTGNNVNVKIVDHCSGCPSTI 58
+ A H GN V +K+ C CPS++
Sbjct: 27 DVALHEIAGNVVRLKLQGACGSCPSSL 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,933,347
Number of Sequences: 62578
Number of extensions: 98582
Number of successful extensions: 206
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 191
Number of HSP's gapped (non-prelim): 16
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)