Query 041264
Match_columns 91
No_of_seqs 137 out of 1049
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:24:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03024 Putative EG45-like do 100.0 1.5E-28 3.2E-33 163.3 9.7 81 2-82 44-125 (125)
2 smart00837 DPBB_1 Rare lipopro 99.9 2.8E-25 6E-30 139.5 7.0 72 5-80 1-87 (87)
3 PF03330 DPBB_1: Rare lipoprot 99.9 8.6E-25 1.9E-29 133.7 7.2 75 5-80 1-78 (78)
4 PLN00050 expansin A; Provision 99.9 2.5E-24 5.3E-29 156.6 8.4 81 2-86 57-151 (247)
5 PLN00193 expansin-A; Provision 99.9 5.2E-24 1.1E-28 155.5 8.6 83 2-86 62-159 (256)
6 PLN03023 Expansin-like B1; Pro 99.9 1.6E-23 3.5E-28 152.3 8.4 79 2-86 57-142 (247)
7 COG4305 Endoglucanase C-termin 99.4 2.8E-13 6.1E-18 95.0 6.8 77 1-88 53-135 (232)
8 PF00967 Barwin: Barwin family 99.4 1.1E-12 2.4E-17 85.8 4.7 59 16-85 57-119 (119)
9 PF07249 Cerato-platanin: Cera 99.0 5E-09 1.1E-13 69.2 8.5 66 4-84 44-113 (119)
10 COG0797 RlpA Lipoproteins [Cel 98.7 5.5E-08 1.2E-12 70.5 7.8 58 18-84 118-176 (233)
11 TIGR00413 rlpA rare lipoprotei 98.7 1.5E-07 3.3E-12 67.3 8.9 58 18-84 34-92 (208)
12 PRK10672 rare lipoprotein A; P 98.4 2E-06 4.4E-11 65.8 8.1 57 18-83 114-171 (361)
13 PF02015 Glyco_hydro_45: Glyco 96.3 0.0057 1.2E-07 43.8 4.0 40 17-62 82-122 (201)
14 PRK08061 rpsN 30S ribosomal pr 66.4 4.6 9.9E-05 23.7 1.6 37 44-80 17-61 (61)
15 TIGR02645 ARCH_P_rylase putati 54.5 59 0.0013 26.4 6.5 53 16-79 26-79 (493)
16 COG5216 Uncharacterized conser 53.8 6.9 0.00015 23.1 0.9 28 16-55 24-51 (67)
17 PF07610 DUF1573: Protein of u 50.1 29 0.00063 18.4 3.0 34 44-80 11-45 (45)
18 COG0199 RpsN Ribosomal protein 48.7 10 0.00022 22.3 1.0 39 42-80 15-61 (61)
19 KOG2923 Uncharacterized conser 43.8 19 0.00042 21.4 1.7 38 18-67 26-65 (67)
20 PF03152 UFD1: Ubiquitin fusio 42.5 1.2E+02 0.0025 21.2 5.9 52 22-84 48-100 (176)
21 TIGR03170 flgA_cterm flagella 37.0 63 0.0014 20.3 3.5 25 17-50 93-117 (122)
22 TIGR03327 AMP_phos AMP phospho 36.1 1.7E+02 0.0036 23.9 6.4 51 17-79 28-80 (500)
23 PRK06911 rpsN 30S ribosomal pr 34.9 26 0.00056 22.3 1.4 40 41-80 53-100 (100)
24 PF13453 zf-TFIIB: Transcripti 32.2 28 0.00061 18.1 1.1 22 45-68 16-38 (41)
25 PRK12618 flgA flagellar basal 31.8 83 0.0018 21.0 3.6 24 18-50 110-133 (141)
26 PF08772 NOB1_Zn_bind: Nin one 31.4 30 0.00066 20.9 1.2 12 17-28 10-21 (73)
27 PRK04350 thymidine phosphoryla 31.1 2.3E+02 0.005 23.1 6.5 51 18-79 22-74 (490)
28 PF13719 zinc_ribbon_5: zinc-r 30.9 44 0.00095 17.1 1.7 15 50-64 4-18 (37)
29 CHL00074 rps14 ribosomal prote 29.8 19 0.00042 22.9 0.2 40 41-80 53-100 (100)
30 cd04751 Commd3 COMM_Domain con 27.9 49 0.0011 20.5 1.8 26 64-90 17-42 (95)
31 PRK08881 rpsN 30S ribosomal pr 26.8 27 0.00058 22.2 0.5 40 41-80 54-101 (101)
32 PF05180 zf-DNL: DNL zinc fing 26.6 35 0.00076 20.2 0.9 12 47-58 28-40 (66)
33 PRK10301 hypothetical protein; 25.9 70 0.0015 20.8 2.3 15 70-84 95-109 (124)
34 PF13144 SAF_2: SAF-like 24.9 1.3E+02 0.0028 20.5 3.7 25 17-50 167-191 (196)
35 PRK06005 flgA flagellar basal 24.7 1.3E+02 0.0028 20.5 3.6 25 18-51 129-153 (160)
36 PF13462 Thioredoxin_4: Thiore 24.6 27 0.00058 22.4 0.2 43 39-84 11-55 (162)
37 PRK06804 flgA flagellar basal 24.2 1.2E+02 0.0026 22.4 3.6 24 18-50 231-254 (261)
38 PF11023 DUF2614: Protein of u 23.0 40 0.00086 22.2 0.7 39 16-62 61-99 (114)
39 PRK11657 dsbG disulfide isomer 23.0 1.5E+02 0.0033 21.3 3.9 39 39-84 116-156 (251)
40 PF00253 Ribosomal_S14: Riboso 22.9 65 0.0014 18.0 1.6 33 44-76 12-52 (55)
41 PF15514 ThaI: Restriction end 21.6 1.3E+02 0.0028 21.1 3.1 28 56-83 158-186 (202)
42 PRK07018 flgA flagellar basal 21.5 1.5E+02 0.0032 21.2 3.5 25 17-50 204-228 (235)
43 PHA02945 interferon resistance 21.4 1.1E+02 0.0024 19.2 2.5 21 39-61 59-80 (88)
44 PF04234 CopC: CopC domain; I 21.2 98 0.0021 18.9 2.2 14 71-84 69-82 (97)
45 PF11631 DUF3255: Protein of u 21.2 17 0.00036 23.7 -1.3 34 56-89 54-87 (123)
46 PF13670 PepSY_2: Peptidase pr 21.0 1.7E+02 0.0038 17.1 3.3 21 20-48 53-73 (83)
47 PF12419 DUF3670: SNF2 Helicas 20.7 97 0.0021 20.4 2.3 28 56-83 80-109 (141)
48 PHA03370 virion protein US2; P 20.4 1.3E+02 0.0028 22.5 3.0 28 43-70 7-35 (269)
49 COG0013 AlaS Alanyl-tRNA synth 20.2 76 0.0016 27.7 2.0 27 3-29 149-178 (879)
50 PF08115 Toxin_28: SFI toxin f 20.1 63 0.0014 16.7 1.0 14 14-27 14-27 (35)
No 1
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.96 E-value=1.5e-28 Score=163.33 Aligned_cols=81 Identities=67% Similarity=1.078 Sum_probs=73.6
Q ss_pred CCcEEEeCccccCCCCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCC-CCCCceecCHHHHHHhcCCCCcEEEEEE
Q 041264 2 RCDAEAAGDALWNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCS-GCPSTIDLSREAFTQIANPVSGIINIDY 80 (91)
Q Consensus 2 ~~~~aA~s~~~~~~g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp-~C~~~lDLS~~AF~~la~~~~G~v~v~w 80 (91)
++++||+++.+|++|+.||+||||+|.+.+...+..|++++|+|+|+|+|| +|++|||||++||++||+.+.|+|+|+|
T Consensus 44 g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA~~~aG~v~V~y 123 (125)
T PLN03024 44 GVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQIANPVAGIINIDY 123 (125)
T ss_pred CCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEcCCCCCCCCceEcCHHHHHHhcCccCCEEEEEE
Confidence 478999999999999999999999997644334568999999999999999 6999999999999999999999999999
Q ss_pred Ee
Q 041264 81 HG 82 (91)
Q Consensus 81 ~~ 82 (91)
.+
T Consensus 124 ~~ 125 (125)
T PLN03024 124 IP 125 (125)
T ss_pred eC
Confidence 74
No 2
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.92 E-value=2.8e-25 Score=139.53 Aligned_cols=72 Identities=35% Similarity=0.664 Sum_probs=64.3
Q ss_pred EEEeCccccCCCCccCceEEEEEccCCCCCCCCCC-CCeEEEEEeecCCC-----------C--C-CceecCHHHHHHhc
Q 041264 5 AEAAGDALWNNGAVWGKMLRHKCTEARNAAPHPWT-GNNVNVKIVDHCSG-----------C--P-STIDLSREAFTQIA 69 (91)
Q Consensus 5 ~aA~s~~~~~~g~~CG~c~~V~~~~~~~~~p~~c~-g~sv~v~V~D~Cp~-----------C--~-~~lDLS~~AF~~la 69 (91)
+||+|+.+|++|+.||+||||+|.+. |..|. +++|+|+|+|+||. | + .|||||++||.+||
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~----~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA 76 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDS----PKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIA 76 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCC----CCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHh
Confidence 48999999999999999999999642 55676 46999999999996 5 3 89999999999999
Q ss_pred CCCCcEEEEEE
Q 041264 70 NPVSGIINIDY 80 (91)
Q Consensus 70 ~~~~G~v~v~w 80 (91)
....|+|+|+|
T Consensus 77 ~~~~Gvi~v~y 87 (87)
T smart00837 77 QYKAGIVPVKY 87 (87)
T ss_pred hhcCCEEeeEC
Confidence 99999999987
No 3
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.91 E-value=8.6e-25 Score=133.69 Aligned_cols=75 Identities=32% Similarity=0.682 Sum_probs=61.6
Q ss_pred EEEeCccccCCCCccCceEEEEEccCCCCCCCCCCC--CeEEEEEeecCCCCC-CceecCHHHHHHhcCCCCcEEEEEE
Q 041264 5 AEAAGDALWNNGAVWGKMLRHKCTEARNAAPHPWTG--NNVNVKIVDHCSGCP-STIDLSREAFTQIANPVSGIINIDY 80 (91)
Q Consensus 5 ~aA~s~~~~~~g~~CG~c~~V~~~~~~~~~p~~c~g--~sv~v~V~D~Cp~C~-~~lDLS~~AF~~la~~~~G~v~v~w 80 (91)
+||++..+|++|..||+||++++.......+. |.. ++|+|+|+|+||+|+ ++||||+.||++|+.++.|+++|+|
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~-~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~~~~G~i~V~w 78 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGT-CKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALADPDAGVIPVEW 78 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT---BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBSTTCSSEEEEE
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccce-EEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCCCCceEEEEEC
Confidence 58999999999999999999999543322222 665 999999999999999 9999999999999999999999999
No 4
>PLN00050 expansin A; Provisional
Probab=99.91 E-value=2.5e-24 Score=156.60 Aligned_cols=81 Identities=25% Similarity=0.417 Sum_probs=73.4
Q ss_pred CCcEEEeCccccCCCCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCC-----------CC---CceecCHHHHHH
Q 041264 2 RCDAEAAGDALWNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSG-----------CP---STIDLSREAFTQ 67 (91)
Q Consensus 2 ~~~~aA~s~~~~~~g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~-----------C~---~~lDLS~~AF~~ 67 (91)
+.++||+|+.+|++|..||+||||+|.+. +..|.+++|+|+|+|+||. |. .|||||+.||.+
T Consensus 57 g~~~AAls~~lf~~G~~CGaCyeV~C~~~----~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~ 132 (247)
T PLN00050 57 GTNTAALSTALFNNGLSCGACFEIKCVND----NIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQK 132 (247)
T ss_pred CceeeeccHhHccCCccccceEEEEcCCC----CcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHH
Confidence 46899999999999999999999999652 3468878999999999996 74 899999999999
Q ss_pred hcCCCCcEEEEEEEeeccC
Q 041264 68 IANPVSGIINIDYHGPIDY 86 (91)
Q Consensus 68 la~~~~G~v~v~w~~v~~~ 86 (91)
||....|+|+|+|+||++.
T Consensus 133 iA~~~aGii~V~yRRVpC~ 151 (247)
T PLN00050 133 IAQYKAGIVPVQYRRVACR 151 (247)
T ss_pred HhhhcCCeeeeEEEEecCc
Confidence 9999999999999999954
No 5
>PLN00193 expansin-A; Provisional
Probab=99.90 E-value=5.2e-24 Score=155.55 Aligned_cols=83 Identities=23% Similarity=0.386 Sum_probs=72.9
Q ss_pred CCcEEEeCccccCCCCccCceEEEEEccCCCCCCCCCC-CCeEEEEEeecCCC-----------CC---CceecCHHHHH
Q 041264 2 RCDAEAAGDALWNNGAVWGKMLRHKCTEARNAAPHPWT-GNNVNVKIVDHCSG-----------CP---STIDLSREAFT 66 (91)
Q Consensus 2 ~~~~aA~s~~~~~~g~~CG~c~~V~~~~~~~~~p~~c~-g~sv~v~V~D~Cp~-----------C~---~~lDLS~~AF~ 66 (91)
+.++||+|+.+|++|..||+||||+|... ..+..|. |++|+|+|||+||. |+ .|||||+.||.
T Consensus 62 g~~~AAls~~lf~~G~~CGaCyev~C~~~--~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~ 139 (256)
T PLN00193 62 GTRTAALSTALFNDGASCGQCYRIMCDYQ--ADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWE 139 (256)
T ss_pred CceeeecCHhHccCCccccCeEEEECCCC--CCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHH
Confidence 46899999999999999999999999431 1255784 67999999999996 85 79999999999
Q ss_pred HhcCCCCcEEEEEEEeeccC
Q 041264 67 QIANPVSGIINIDYHGPIDY 86 (91)
Q Consensus 67 ~la~~~~G~v~v~w~~v~~~ 86 (91)
+||....|+|+|+|+||++.
T Consensus 140 ~iA~~~~Giv~V~yrRVpC~ 159 (256)
T PLN00193 140 KIGIYRGGIVPVLFQRVPCK 159 (256)
T ss_pred HHhhhcCCeEeEEEEEeccc
Confidence 99999999999999999854
No 6
>PLN03023 Expansin-like B1; Provisional
Probab=99.90 E-value=1.6e-23 Score=152.27 Aligned_cols=79 Identities=22% Similarity=0.385 Sum_probs=71.4
Q ss_pred CCcEEEeCccccCCCCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCCCceecCHHHHHHhcC-------CCCc
Q 041264 2 RCDAEAAGDALWNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIAN-------PVSG 74 (91)
Q Consensus 2 ~~~~aA~s~~~~~~g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~~~lDLS~~AF~~la~-------~~~G 74 (91)
+.++||++ .+|++|..||+||||+|.+ +..|.+++|+|+|||.|+++..|||||.+||.+||. ...|
T Consensus 57 g~~~aa~s-~Lf~~G~~CGaCy~irC~~-----~~~C~~~~v~V~iTd~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aG 130 (247)
T PLN03023 57 GGNVAGVS-RLYRNGTGCGACYQVRCKA-----PNLCSDDGVNVVVTDYGEGDKTDFILSPRAYARLARPNMAAELFAYG 130 (247)
T ss_pred cceeeeeh-hhhcCCchhcccEEeecCC-----CCccCCCCeEEEEEeCCCCCCCccccCHHHHHHHhCccccchhccCc
Confidence 46789998 9999999999999999975 678998899999999999766999999999999997 3679
Q ss_pred EEEEEEEeeccC
Q 041264 75 IINIDYHGPIDY 86 (91)
Q Consensus 75 ~v~v~w~~v~~~ 86 (91)
+|+|+|+||++.
T Consensus 131 iv~v~YrRVpC~ 142 (247)
T PLN03023 131 VVDVEYRRIPCR 142 (247)
T ss_pred EEEeEEEEEecc
Confidence 999999999843
No 7
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2.8e-13 Score=94.96 Aligned_cols=77 Identities=29% Similarity=0.351 Sum_probs=66.9
Q ss_pred CCCc-EEEeCccccCCC----CccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCC-CceecCHHHHHHhcCCCCc
Q 041264 1 PRCD-AEAAGDALWNNG----AVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCP-STIDLSREAFTQIANPVSG 74 (91)
Q Consensus 1 ~~~~-~aA~s~~~~~~g----~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~-~~lDLS~~AF~~la~~~~G 74 (91)
|+++ |.|||..+-|-| +.-|+.+||.. | .| ..+|.|+|+-|+-. +.||||+.||.+|+++.+|
T Consensus 53 ~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG-------P---KG-~TTVYVTDlYPegasGaLDLSpNAFakIGnm~qG 121 (232)
T COG4305 53 PSDMEITALNPAQLNLGGIPAAMAGAYLRVQG-------P---KG-KTTVYVTDLYPEGASGALDLSPNAFAKIGNMKQG 121 (232)
T ss_pred CCcceeeecCHHHcccCCchhhhccceEEEEC-------C---CC-ceEEEEecccccccccccccChHHHhhhcchhcC
Confidence 4444 889998888754 57899999998 4 45 45999999999888 9999999999999999999
Q ss_pred EEEEEEEeeccCCC
Q 041264 75 IINIDYHGPIDYLS 88 (91)
Q Consensus 75 ~v~v~w~~v~~~~~ 88 (91)
+|+|+|+.|+.|++
T Consensus 122 rIpvqWrvv~aPvt 135 (232)
T COG4305 122 RIPVQWRVVKAPVT 135 (232)
T ss_pred ccceeEEEeccccc
Confidence 99999999998875
No 8
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.35 E-value=1.1e-12 Score=85.78 Aligned_cols=59 Identities=37% Similarity=0.500 Sum_probs=43.6
Q ss_pred CCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCCCceecCHHHHHHhcC----CCCcEEEEEEEeecc
Q 041264 16 GAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIAN----PVSGIINIDYHGPID 85 (91)
Q Consensus 16 g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~~~lDLS~~AF~~la~----~~~G~v~v~w~~v~~ 85 (91)
-..||+|++||++. +|++++|+|||+|+. ++|||.+.+|.+|.. ...|.+.|.|+.|.+
T Consensus 57 q~~CGkClrVTNt~---------tga~~~~RIVDqCsn--GGLDld~~vF~~iDtdG~G~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 57 QDSCGKCLRVTNTA---------TGAQVTVRIVDQCSN--GGLDLDPTVFNQIDTDGQGYAQGHLIVDYEFVDC 119 (119)
T ss_dssp GGGTT-EEEEE-TT---------T--EEEEEEEEE-SS--SSEES-SSSHHHH-SSSHHHHHTEEEEEEEEE--
T ss_pred cccccceEEEEecC---------CCcEEEEEEEEcCCC--CCcccChhHHhhhccCCcccccceEEEEEEEEcC
Confidence 35799999999976 799999999999762 699999999999963 257999999998863
No 9
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.98 E-value=5e-09 Score=69.24 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=48.8
Q ss_pred cEEEeC-ccccCCCCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCCCceecCHHHHHHhcC---CCCcEEEEE
Q 041264 4 DAEAAG-DALWNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIAN---PVSGIINID 79 (91)
Q Consensus 4 ~~aA~s-~~~~~~g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~~~lDLS~~AF~~la~---~~~G~v~v~ 79 (91)
+|.+.. -.-|| .+.||.|+++++ +|++|.+..+|.-. ..|+|+.+||+.|.+ .+.|+|+++
T Consensus 44 ~IGg~~~V~gWn-S~~CGtC~~lty-----------~g~si~vlaID~a~---~gfnis~~A~n~LT~g~a~~lG~V~a~ 108 (119)
T PF07249_consen 44 YIGGAPAVAGWN-SPNCGTCWKLTY-----------NGRSIYVLAIDHAG---GGFNISLDAMNDLTNGQAVELGRVDAT 108 (119)
T ss_dssp SEEEETT--STT--TTTT-EEEEEE-----------TTEEEEEEEEEE-S---SSEEE-HHHHHHHHTS-CCCC-EEE-E
T ss_pred eeccccccccCC-CCCCCCeEEEEE-----------CCeEEEEEEEecCC---CcccchHHHHHHhcCCcccceeEEEEE
Confidence 454544 34575 588999999999 79999999999843 789999999999985 478999999
Q ss_pred EEeec
Q 041264 80 YHGPI 84 (91)
Q Consensus 80 w~~v~ 84 (91)
|++|.
T Consensus 109 ~~qV~ 113 (119)
T PF07249_consen 109 YTQVD 113 (119)
T ss_dssp EEEE-
T ss_pred EEEcC
Confidence 99995
No 10
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=98.74 E-value=5.5e-08 Score=70.50 Aligned_cols=58 Identities=22% Similarity=0.206 Sum_probs=52.3
Q ss_pred ccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCC-CceecCHHHHHHhcCCCCcEEEEEEEeec
Q 041264 18 VWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCP-STIDLSREAFTQIANPVSGIINIDYHGPI 84 (91)
Q Consensus 18 ~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~-~~lDLS~~AF~~la~~~~G~v~v~w~~v~ 84 (91)
.-|..++||+.+ ||++|+|+|.|++|-=. +.||||.+|+++|+....|+.+|..+.+.
T Consensus 118 P~~t~v~VtNl~---------NgrsvvVRINDRGPf~~gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~ 176 (233)
T COG0797 118 PLPTYVRVTNLD---------NGRSVVVRINDRGPFVSGRIIDLSKAAADKLGMIRSGVAKVRIEVLG 176 (233)
T ss_pred CCCCEEEEEEcc---------CCcEEEEEEeCCCCCCCCcEeEcCHHHHHHhCCccCceEEEEEEEec
Confidence 378999999987 89999999999999555 99999999999999999999888888775
No 11
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=98.70 E-value=1.5e-07 Score=67.27 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=53.4
Q ss_pred ccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCC-CceecCHHHHHHhcCCCCcEEEEEEEeec
Q 041264 18 VWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCP-STIDLSREAFTQIANPVSGIINIDYHGPI 84 (91)
Q Consensus 18 ~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~-~~lDLS~~AF~~la~~~~G~v~v~w~~v~ 84 (91)
..|..++|++.. +|++|+|+|.|++|-=+ +.||||++|+++|+....|..+|+.+.+.
T Consensus 34 PlgT~V~VtNl~---------ngrsviVrVnDRGPf~~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~ 92 (208)
T TIGR00413 34 PFNTYVKVTNLH---------NNRSVIVRINDRGPFSDDRIIDLSHAAAREIGLISRGVGQVRIEVLH 92 (208)
T ss_pred CCCCEEEEEECC---------CCCEEEEEEeCCCCCCCCCEEECCHHHHHHcCCCcCceEEEEEEEEe
Confidence 589999999976 89999999999999766 99999999999999999999999988774
No 12
>PRK10672 rare lipoprotein A; Provisional
Probab=98.38 E-value=2e-06 Score=65.84 Aligned_cols=57 Identities=25% Similarity=0.212 Sum_probs=51.4
Q ss_pred ccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCC-CceecCHHHHHHhcCCCCcEEEEEEEee
Q 041264 18 VWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCP-STIDLSREAFTQIANPVSGIINIDYHGP 83 (91)
Q Consensus 18 ~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~-~~lDLS~~AF~~la~~~~G~v~v~w~~v 83 (91)
..|..++|++.. ||++|+|+|.|++|-=+ +.||||++|+++|.....++|+|+.-.|
T Consensus 114 Plps~vrVtNl~---------ngrsvvVrVnDRGP~~~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v 171 (361)
T PRK10672 114 PIPSYVRVTNLA---------NGRMIVVRINDRGPYGPGRVIDLSRAAADRLNTSNNTKVRIDPIIV 171 (361)
T ss_pred CCCCEEEEEECC---------CCcEEEEEEeCCCCCCCCCeeEcCHHHHHHhCCCCCceEEEEEEee
Confidence 489999999987 89999999999999666 9999999999999987788888887766
No 13
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=96.34 E-value=0.0057 Score=43.76 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=28.8
Q ss_pred CccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCC-CceecCH
Q 041264 17 AVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCP-STIDLSR 62 (91)
Q Consensus 17 ~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~-~~lDLS~ 62 (91)
..|++||+++-++. .-.||..+|++++.-..=. +||||--
T Consensus 82 ~~Cc~Cy~LtFt~g------~l~GKkmiVQ~tNtG~dlg~n~FDl~i 122 (201)
T PF02015_consen 82 SWCCACYELTFTSG------PLKGKKMIVQVTNTGGDLGSNQFDLAI 122 (201)
T ss_dssp HHTT-EEEEEE-SS------TTTT-EEEEEEEEE-TTTTTTEEEEE-
T ss_pred CcccceEEEEEcCC------CcCCCEeEEEecccCCCCCCCeEEEEe
Confidence 67999999999753 2269999999999987656 8999863
No 14
>PRK08061 rpsN 30S ribosomal protein S14; Reviewed
Probab=66.41 E-value=4.6 Score=23.70 Aligned_cols=37 Identities=22% Similarity=0.556 Sum_probs=29.5
Q ss_pred EEEEeecCCCCC------CceecCHHHHHHhcC--CCCcEEEEEE
Q 041264 44 NVKIVDHCSGCP------STIDLSREAFTQIAN--PVSGIINIDY 80 (91)
Q Consensus 44 ~v~V~D~Cp~C~------~~lDLS~~AF~~la~--~~~G~v~v~w 80 (91)
.+++.++|.-|+ ..|.||.-.|.++|. .-+|+.+-+|
T Consensus 17 ~~r~~nRC~~tGR~rgvir~fgl~R~~FRe~A~~G~ipGv~KasW 61 (61)
T PRK08061 17 KVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61 (61)
T ss_pred CcccceeeecCCCCcceeccCCccHHHHHHHHHcCcCCCeeeccC
Confidence 467888998765 678899999999984 4588877766
No 15
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=54.52 E-value=59 Score=26.41 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=37.8
Q ss_pred CCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCC-CCceecCHHHHHHhcCCCCcEEEEE
Q 041264 16 GAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGC-PSTIDLSREAFTQIANPVSGIINID 79 (91)
Q Consensus 16 g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C-~~~lDLS~~AF~~la~~~~G~v~v~ 79 (91)
|-.=+..++|+. +++++++.|++.-.== ++.+-||..||++|.-...-.|.|.
T Consensus 26 g~~~~~rv~v~~-----------~~~~~~a~~~~~~~~~~~~~~gl~~~~~~~l~~~~g~~v~v~ 79 (493)
T TIGR02645 26 GFTPQDRVEVRI-----------GGKSLIAILVGSDTLVEMGEIGLSVSAVETFMAREGDIVTVT 79 (493)
T ss_pred CCCcCCeEEEEe-----------CCEEEEEEEecccccccCCeeeccHHHHHHcCCCCCCEEEEe
Confidence 445578899998 7889999888632112 3899999999999974444445554
No 16
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=53.78 E-value=6.9 Score=23.09 Aligned_cols=28 Identities=21% Similarity=0.545 Sum_probs=19.3
Q ss_pred CCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCC
Q 041264 16 GAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCP 55 (91)
Q Consensus 16 g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~ 55 (91)
--.||..++|.-.+-+ +| .++-+||+|.
T Consensus 24 PCPCGDRFeIsLeDl~-------~G-----E~VArCPSCS 51 (67)
T COG5216 24 PCPCGDRFEISLEDLR-------NG-----EVVARCPSCS 51 (67)
T ss_pred cCCCCCEeEEEHHHhh-------CC-----ceEEEcCCce
Confidence 3469999999875532 34 3455799987
No 17
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=50.15 E-value=29 Score=18.43 Aligned_cols=34 Identities=32% Similarity=0.506 Sum_probs=23.0
Q ss_pred EEEEeecCCCCC-CceecCHHHHHHhcCCCCcEEEEEE
Q 041264 44 NVKIVDHCSGCP-STIDLSREAFTQIANPVSGIINIDY 80 (91)
Q Consensus 44 ~v~V~D~Cp~C~-~~lDLS~~AF~~la~~~~G~v~v~w 80 (91)
.+.|.+.=.+|+ -..++++. .|+.-+.|.|.|+|
T Consensus 11 ~L~I~~v~tsCgCt~~~~~~~---~i~PGes~~i~v~y 45 (45)
T PF07610_consen 11 PLVITDVQTSCGCTTAEYSKK---PIAPGESGKIKVTY 45 (45)
T ss_pred cEEEEEeeEccCCEEeeCCcc---eECCCCEEEEEEEC
Confidence 455566656777 66677763 37777778888876
No 18
>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=48.73 E-value=10 Score=22.27 Aligned_cols=39 Identities=18% Similarity=0.449 Sum_probs=30.5
Q ss_pred eEEEEEeecCCCCC------CceecCHHHHHHhcCC--CCcEEEEEE
Q 041264 42 NVNVKIVDHCSGCP------STIDLSREAFTQIANP--VSGIINIDY 80 (91)
Q Consensus 42 sv~v~V~D~Cp~C~------~~lDLS~~AF~~la~~--~~G~v~v~w 80 (91)
.-.++..++|.-|+ ..|-|+.-.|.++|.. -+|..+-+|
T Consensus 15 ~~~~r~~nRC~~cGRprg~~Rkf~lcR~cfRE~A~~g~ipGv~K~sW 61 (61)
T COG0199 15 KSPGRGRNRCRRCGRPRGVIRKFGLCRICFRELAHKGEIPGVKKASW 61 (61)
T ss_pred CccccccccccccCCCccchhhhhhHHHHHHHHhhccCCCCeEeccC
Confidence 34566778999876 5799999999999943 478877776
No 19
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.78 E-value=19 Score=21.45 Aligned_cols=38 Identities=18% Similarity=0.488 Sum_probs=25.0
Q ss_pred ccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCC--CceecCHHHHHH
Q 041264 18 VWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCP--STIDLSREAFTQ 67 (91)
Q Consensus 18 ~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~--~~lDLS~~AF~~ 67 (91)
.||..|+|+-.+-. +|..| -.||+|. -.++-.++-|.+
T Consensus 26 pCGDrf~It~edL~-------~ge~V-----a~CpsCSL~I~ViYd~edf~~ 65 (67)
T KOG2923|consen 26 PCGDRFQITLEDLE-------NGEDV-----ARCPSCSLIIRVIYDKEDFAE 65 (67)
T ss_pred CCCCeeeecHHHHh-------CCCee-----ecCCCceEEEEEEeCHHHhhc
Confidence 59999999975521 45543 3799998 555555555543
No 20
>PF03152 UFD1: Ubiquitin fusion degradation protein UFD1; InterPro: IPR004854 Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified []. This family includes UFD1, a 40kDa protein that is essential for vegetative cell viability []. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterised by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1ZC1_A 2YUJ_A.
Probab=42.49 E-value=1.2e+02 Score=21.24 Aligned_cols=52 Identities=12% Similarity=0.250 Sum_probs=37.9
Q ss_pred eEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCC-CceecCHHHHHHhcCCCCcEEEEEEEeec
Q 041264 22 MLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCP-STIDLSREAFTQIANPVSGIINIDYHGPI 84 (91)
Q Consensus 22 c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~-~~lDLS~~AF~~la~~~~G~v~v~w~~v~ 84 (91)
-|+|++.. +++.+.+=|.+.=. + +.+-|+...++.|.-.....|.|++.+.+
T Consensus 48 ~F~i~n~~---------~~~~th~GVlEFsA--~eG~i~lP~wmm~~L~l~~g~~V~v~~~~LP 100 (176)
T PF03152_consen 48 LFEISNPD---------NGKRTHCGVLEFSA--EEGTIYLPPWMMQNLGLQEGDIVRVEYVSLP 100 (176)
T ss_dssp EEEEEETT---------TTEEEEEEEEEE----CTTEEEE-CHHHHHHT--TTEEEEEEEEE--
T ss_pred EEEEecCC---------CCcEEEEEEEEeEc--CCCeEEeCccHHhhcCCCCCCEEEEEEeECC
Confidence 58888853 57788888888754 4 89999999999998777788999988775
No 21
>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by Pfam model pfam08666.
Probab=37.02 E-value=63 Score=20.29 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=20.7
Q ss_pred CccCceEEEEEccCCCCCCCCCCCCeEEEEEeec
Q 041264 17 AVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDH 50 (91)
Q Consensus 17 ~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~ 50 (91)
..=|.-++|++.. +++.+.++|++.
T Consensus 93 g~~G~~I~V~N~~---------s~k~i~~~V~~~ 117 (122)
T TIGR03170 93 GAVGDQIRVRNLS---------SGKIISGIVTGP 117 (122)
T ss_pred cCCCCEEEEEECC---------CCCEEEEEEeCC
Confidence 3469999999965 799999999875
No 22
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=36.14 E-value=1.7e+02 Score=23.94 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=34.4
Q ss_pred CccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCC-C-CCceecCHHHHHHhcCCCCcEEEEE
Q 041264 17 AVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSG-C-PSTIDLSREAFTQIANPVSGIINID 79 (91)
Q Consensus 17 ~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~-C-~~~lDLS~~AF~~la~~~~G~v~v~ 79 (91)
-.=+..++|+. +++++++++.=. .. = ++.+-||..+|++|.-...-.|.|.
T Consensus 28 ~~~~~rv~v~~-----------~~~~~~a~~~~~-~~~~~~g~~gls~~~~~~l~~~~g~~v~v~ 80 (500)
T TIGR03327 28 VHPGDRVRIES-----------GGKSVVGIVDST-DTLVEKGEIGLSHEVLEELGISEGEVVEVT 80 (500)
T ss_pred CCCCCeEEEEe-----------CCEEEEEEEEcc-cccccCCeeeccHHHHHHcCCCCCCEEEEe
Confidence 34466788887 677777765433 21 1 2899999999999985544455554
No 23
>PRK06911 rpsN 30S ribosomal protein S14; Reviewed
Probab=34.88 E-value=26 Score=22.31 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=31.6
Q ss_pred CeEEEEEeecCCCCC------CceecCHHHHHHhc--CCCCcEEEEEE
Q 041264 41 NNVNVKIVDHCSGCP------STIDLSREAFTQIA--NPVSGIINIDY 80 (91)
Q Consensus 41 ~sv~v~V~D~Cp~C~------~~lDLS~~AF~~la--~~~~G~v~v~w 80 (91)
.+-.+.+.++|.-.+ ..|-||.-.|..+| +.=+|+.+-+|
T Consensus 53 nss~~R~rNRC~~TGR~Rgv~r~FgLsRi~~Rela~~G~lPGv~KaSW 100 (100)
T PRK06911 53 NSNPVRYVTRCKQCGRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW 100 (100)
T ss_pred ccCcchhhcccCCCCCCcccccccCchHHHHHHHHHcCCCCCeecccC
Confidence 455778889998432 79999999999998 45588888777
No 24
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=32.21 E-value=28 Score=18.12 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=14.1
Q ss_pred EEEeecCCCCC-CceecCHHHHHHh
Q 041264 45 VKIVDHCSGCP-STIDLSREAFTQI 68 (91)
Q Consensus 45 v~V~D~Cp~C~-~~lDLS~~AF~~l 68 (91)
-..+|.|+.|. -.|| ..-|+++
T Consensus 16 ~~~id~C~~C~G~W~d--~~el~~~ 38 (41)
T PF13453_consen 16 DVEIDVCPSCGGIWFD--AGELEKL 38 (41)
T ss_pred CEEEEECCCCCeEEcc--HHHHHHH
Confidence 35678999998 5655 3444444
No 25
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=31.79 E-value=83 Score=20.99 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=20.5
Q ss_pred ccCceEEEEEccCCCCCCCCCCCCeEEEEEeec
Q 041264 18 VWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDH 50 (91)
Q Consensus 18 ~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~ 50 (91)
.=|.-++|++.. +++.|.++|++.
T Consensus 110 ~~Gd~IrV~N~~---------S~riV~g~V~~~ 133 (141)
T PRK12618 110 GVGDEIRVMNLS---------SRTTVSGRIAAD 133 (141)
T ss_pred CCCCEEEEEECC---------CCCEEEEEEecC
Confidence 469999999976 699999999875
No 26
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=31.41 E-value=30 Score=20.86 Aligned_cols=12 Identities=0% Similarity=-0.194 Sum_probs=6.4
Q ss_pred CccCceEEEEEc
Q 041264 17 AVWGKMLRHKCT 28 (91)
Q Consensus 17 ~~CG~c~~V~~~ 28 (91)
..|.+|++++-.
T Consensus 10 lrC~aCf~~t~~ 21 (73)
T PF08772_consen 10 LRCHACFKITKD 21 (73)
T ss_dssp EE-SSS--EES-
T ss_pred EEccccccCcCC
Confidence 469999999873
No 27
>PRK04350 thymidine phosphorylase; Provisional
Probab=31.08 E-value=2.3e+02 Score=23.06 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=33.6
Q ss_pred ccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCC-CC-CCceecCHHHHHHhcCCCCcEEEEE
Q 041264 18 VWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCS-GC-PSTIDLSREAFTQIANPVSGIINID 79 (91)
Q Consensus 18 ~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp-~C-~~~lDLS~~AF~~la~~~~G~v~v~ 79 (91)
.=+..++|+. +++++++++.=.=. -= ++.+-||..+|++|.-...-.+.|.
T Consensus 22 ~~~~rv~v~~-----------~~~~~~a~~~~~~~~~~~~~~~gl~~~~~~~l~~~~g~~v~v~ 74 (490)
T PRK04350 22 HAGDRVEVRA-----------GGRSIIATLNITDDDLVGPGEIGLSESAFRRLGVSEGDEVEVS 74 (490)
T ss_pred CcCCeEEEEc-----------CCeEEEEEEEeccccccCCCcccccHHHHHHhCCCCCCeEEEe
Confidence 3477888888 57776665432212 12 2899999999999985544455554
No 28
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=30.88 E-value=44 Score=17.14 Aligned_cols=15 Identities=13% Similarity=0.656 Sum_probs=12.6
Q ss_pred cCCCCCCceecCHHH
Q 041264 50 HCSGCPSTIDLSREA 64 (91)
Q Consensus 50 ~Cp~C~~~lDLS~~A 64 (91)
.||.|...|.|+.+.
T Consensus 4 ~CP~C~~~f~v~~~~ 18 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDK 18 (37)
T ss_pred ECCCCCceEEcCHHH
Confidence 699999888888776
No 29
>CHL00074 rps14 ribosomal protein S14
Probab=29.79 E-value=19 Score=22.87 Aligned_cols=40 Identities=18% Similarity=0.367 Sum_probs=31.2
Q ss_pred CeEEEEEeecCCCCC------CceecCHHHHHHhc--CCCCcEEEEEE
Q 041264 41 NNVNVKIVDHCSGCP------STIDLSREAFTQIA--NPVSGIINIDY 80 (91)
Q Consensus 41 ~sv~v~V~D~Cp~C~------~~lDLS~~AF~~la--~~~~G~v~v~w 80 (91)
.+-.+.|.++|.-++ ..|-||.-.|.++| +.=+|+.+-+|
T Consensus 53 ~ss~tRi~NRC~~TGR~Rgv~r~F~LsRi~~Re~a~~G~ipGv~KaSW 100 (100)
T CHL00074 53 NSAPTRLHNRCFLTGRPRGNYRDFGLSRHVLREMAHACLLPGVTKSSW 100 (100)
T ss_pred ccchHHHhccccCCCCCCccccCcCchHHHHHHHHHcCCCCCcccccC
Confidence 355678888998433 78999999999998 45588887776
No 30
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=27.87 E-value=49 Score=20.55 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=16.1
Q ss_pred HHHHhcCCCCcEEEEEEEeeccCCCCC
Q 041264 64 AFTQIANPVSGIINIDYHGPIDYLSSS 90 (91)
Q Consensus 64 AF~~la~~~~G~v~v~w~~v~~~~~~~ 90 (91)
.+..++..-+.+.+++|+ +.--|+|+
T Consensus 17 ~l~~~~~~~p~l~dv~WR-ld~~lsS~ 42 (95)
T cd04751 17 KLKSIGISFPHITDVNWR-LDYVVSSK 42 (95)
T ss_pred HHHHhCCCCCceecCceE-EEEEEccc
Confidence 445555555677889998 55445543
No 31
>PRK08881 rpsN 30S ribosomal protein S14; Reviewed
Probab=26.85 E-value=27 Score=22.24 Aligned_cols=40 Identities=18% Similarity=0.446 Sum_probs=30.9
Q ss_pred CeEEEEEeecCCCCC------CceecCHHHHHHhcC--CCCcEEEEEE
Q 041264 41 NNVNVKIVDHCSGCP------STIDLSREAFTQIAN--PVSGIINIDY 80 (91)
Q Consensus 41 ~sv~v~V~D~Cp~C~------~~lDLS~~AF~~la~--~~~G~v~v~w 80 (91)
.+-.+.|.++|.-.+ ..|=||.-.|.++|. .=+|+.+-+|
T Consensus 54 ~ss~tRi~NRC~~TGR~Rgv~r~F~LsRi~fRela~~G~lpGv~KsSW 101 (101)
T PRK08881 54 NSSPTRLRNRCELTGRPRGYYRKFGLSRIKLRELAHRGEIPGVVKASW 101 (101)
T ss_pred ccchHHHhccccCCCCCCccccCcCchHHHHHHHHHcCCCCCeecccC
Confidence 355677888888432 899999999999984 4588887776
No 32
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=26.63 E-value=35 Score=20.25 Aligned_cols=12 Identities=25% Similarity=1.005 Sum_probs=6.8
Q ss_pred EeecCCCCC-Cce
Q 041264 47 IVDHCSGCP-STI 58 (91)
Q Consensus 47 V~D~Cp~C~-~~l 58 (91)
|.=+||+|. .|+
T Consensus 28 Viv~C~gC~~~Hl 40 (66)
T PF05180_consen 28 VIVQCPGCKNRHL 40 (66)
T ss_dssp EEEE-TTS--EEE
T ss_pred EEEECCCCcceee
Confidence 444899998 554
No 33
>PRK10301 hypothetical protein; Provisional
Probab=25.93 E-value=70 Score=20.83 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=13.1
Q ss_pred CCCCcEEEEEEEeec
Q 041264 70 NPVSGIINIDYHGPI 84 (91)
Q Consensus 70 ~~~~G~v~v~w~~v~ 84 (91)
.+..|.+.|+|+.+.
T Consensus 95 ~L~~G~YtV~Wrvvs 109 (124)
T PRK10301 95 SLKPGTYTVDWHVVS 109 (124)
T ss_pred CCCCccEEEEEEEEe
Confidence 468999999999886
No 34
>PF13144 SAF_2: SAF-like
Probab=24.91 E-value=1.3e+02 Score=20.49 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.0
Q ss_pred CccCceEEEEEccCCCCCCCCCCCCeEEEEEeec
Q 041264 17 AVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDH 50 (91)
Q Consensus 17 ~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~ 50 (91)
..=|.-++|++.+ +|+.+.++|++.
T Consensus 167 G~~G~~I~V~N~~---------S~k~v~g~V~~~ 191 (196)
T PF13144_consen 167 GALGDTIRVKNLS---------SGKIVQGRVIGP 191 (196)
T ss_pred CCCCCEEEEEECC---------CCCEEEEEEecC
Confidence 3469999999976 699999999875
No 35
>PRK06005 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=24.67 E-value=1.3e+02 Score=20.49 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=20.9
Q ss_pred ccCceEEEEEccCCCCCCCCCCCCeEEEEEeecC
Q 041264 18 VWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHC 51 (91)
Q Consensus 18 ~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~C 51 (91)
.=|.-++|++.. +|+.|.++|++..
T Consensus 129 ~~Gd~IrVrN~~---------Sgkiv~g~V~~~g 153 (160)
T PRK06005 129 AAGDLIRVRNVD---------SGVIVSGTVLADG 153 (160)
T ss_pred CCCCEEEEEECC---------CCCEEEEEEecCC
Confidence 469999999976 7999999998753
No 36
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=24.63 E-value=27 Score=22.36 Aligned_cols=43 Identities=12% Similarity=0.236 Sum_probs=25.9
Q ss_pred CCCeEEEEEee-cCCCCC-CceecCHHHHHHhcCCCCcEEEEEEEeec
Q 041264 39 TGNNVNVKIVD-HCSGCP-STIDLSREAFTQIANPVSGIINIDYHGPI 84 (91)
Q Consensus 39 ~g~sv~v~V~D-~Cp~C~-~~lDLS~~AF~~la~~~~G~v~v~w~~v~ 84 (91)
+.+.+++...| .||-|. -+-.|- +..+++ .+.|.|.+.|+-++
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~-~~~~~~--i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELE-KLLKKY--IDPGKVKFVFRPVP 55 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHH-HHHHHH--TTTTTEEEEEEESS
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHh-hhhhhc--cCCCceEEEEEEcc
Confidence 45555666666 688887 444443 333443 36778888888764
No 37
>PRK06804 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=24.17 E-value=1.2e+02 Score=22.41 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=20.6
Q ss_pred ccCceEEEEEccCCCCCCCCCCCCeEEEEEeec
Q 041264 18 VWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDH 50 (91)
Q Consensus 18 ~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~ 50 (91)
.=|.-++|++.. +|+.|.++|++.
T Consensus 231 ~~Gd~IrVrN~~---------SgkvV~a~V~~~ 254 (261)
T PRK06804 231 RKGELIKVKNLS---------SGRVVTATVDGS 254 (261)
T ss_pred CCCCEEEEEECC---------CCCEEEEEEecC
Confidence 469999999976 699999999875
No 38
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=23.04 E-value=40 Score=22.20 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=24.5
Q ss_pred CCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCCCceecCH
Q 041264 16 GAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCPSTIDLSR 62 (91)
Q Consensus 16 g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~~~lDLS~ 62 (91)
|-...+=++|+|. .|...+-..-=+|.|+-|+..+-|.+
T Consensus 61 GmlStkav~V~CP--------~C~K~TKmLGr~D~CM~C~~pLTLd~ 99 (114)
T PF11023_consen 61 GMLSTKAVQVECP--------NCGKQTKMLGRVDACMHCKEPLTLDP 99 (114)
T ss_pred hhhcccceeeECC--------CCCChHhhhchhhccCcCCCcCccCc
Confidence 4556777889992 35443433344599999995554443
No 39
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=22.98 E-value=1.5e+02 Score=21.35 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=22.5
Q ss_pred CCCeEEEEEee-cCCCCCCceecCHHHHHHhcC-CCCcEEEEEEEeec
Q 041264 39 TGNNVNVKIVD-HCSGCPSTIDLSREAFTQIAN-PVSGIINIDYHGPI 84 (91)
Q Consensus 39 ~g~sv~v~V~D-~Cp~C~~~lDLS~~AF~~la~-~~~G~v~v~w~~v~ 84 (91)
+++.+++..+| .||-|. .+++.+.. .+.|.|.|.|-.++
T Consensus 116 ~ak~~I~vFtDp~CpyC~-------kl~~~l~~~~~~g~V~v~~ip~~ 156 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCK-------QFWQQARPWVDSGKVQLRHILVG 156 (251)
T ss_pred CCCeEEEEEECCCChhHH-------HHHHHHHHHhhcCceEEEEEecc
Confidence 45666777788 799886 12222221 24466777666543
No 40
>PF00253 Ribosomal_S14: Ribosomal protein S14p/S29e; InterPro: IPR001209 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. S14 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S14 is known to be required for the assembly of 30S particles and may also be responsible for determining the conformation of 16S rRNA at the A site. It belongs to a family of ribosomal proteins [, ] that include, bacterial, algal and plant chloroplast, yeast mitochondrial, cyanelle and archael, Methanococcus vannielii S14's, as well as yeast mitochondrial MRP2, yeast YS29A/B and mammalian S29.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_N 2XZM_N 1S1H_N 3IZ6_N 2YKR_N 2QBB_N 3I1Z_N 3OAQ_N 3R8O_N 2Z4K_N ....
Probab=22.95 E-value=65 Score=18.02 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=24.2
Q ss_pred EEEEeecCCCCC------CceecCHHHHHHhcC--CCCcEE
Q 041264 44 NVKIVDHCSGCP------STIDLSREAFTQIAN--PVSGII 76 (91)
Q Consensus 44 ~v~V~D~Cp~C~------~~lDLS~~AF~~la~--~~~G~v 76 (91)
...+.++|.-|+ ..|.||.-.|.++|. .=+|..
T Consensus 12 ~~r~~nrC~~tGR~rgv~r~f~lsR~~fR~~a~~g~l~G~~ 52 (55)
T PF00253_consen 12 PTRIKNRCVITGRSRGVIRKFGLSRICFRELASKGLLPGVK 52 (55)
T ss_dssp CTGSCSSBSSSCSSSSBETTTSSBHHHHHHHHHTTSSTTEE
T ss_pred CCCCCeecccCCCceeeeccccccHHHHHHHHHcCCCCCEE
Confidence 345677888654 788999999999984 335654
No 41
>PF15514 ThaI: Restriction endonuclease ThaI; PDB: 3NDH_B.
Probab=21.57 E-value=1.3e+02 Score=21.08 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=18.1
Q ss_pred CceecCHHHHHHhc-CCCCcEEEEEEEee
Q 041264 56 STIDLSREAFTQIA-NPVSGIINIDYHGP 83 (91)
Q Consensus 56 ~~lDLS~~AF~~la-~~~~G~v~v~w~~v 83 (91)
+.+.+|..|...+. ..+.=+|+|+|++.
T Consensus 158 RGVEiSn~Al~e~i~~~~TmsI~IeWkkT 186 (202)
T PF15514_consen 158 RGVEISNLALLECIAHKDTMSIPIEWKKT 186 (202)
T ss_dssp -SEEE-HHHHHHHHHSTT-EEEEEE----
T ss_pred CceeccHHHHHHHhccccceEEEEEeeec
Confidence 89999999998884 66777899999975
No 42
>PRK07018 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=21.45 E-value=1.5e+02 Score=21.21 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=20.8
Q ss_pred CccCceEEEEEccCCCCCCCCCCCCeEEEEEeec
Q 041264 17 AVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDH 50 (91)
Q Consensus 17 ~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~ 50 (91)
..=|.-++|++.. +|+.|.++|++.
T Consensus 204 G~~Gd~IrVrN~~---------Sgk~i~g~V~~~ 228 (235)
T PRK07018 204 GAVGQQIRVRNMA---------SGQVVSGIVTGD 228 (235)
T ss_pred CCCCCeEEEEECC---------CCCEEEEEEeCC
Confidence 3469999999965 799999999875
No 43
>PHA02945 interferon resistance protein; Provisional
Probab=21.43 E-value=1.1e+02 Score=19.20 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=15.1
Q ss_pred CCCeEEEEEeecCCCCC-CceecC
Q 041264 39 TGNNVNVKIVDHCSGCP-STIDLS 61 (91)
Q Consensus 39 ~g~sv~v~V~D~Cp~C~-~~lDLS 61 (91)
.|+.++++|...=+ . +++|||
T Consensus 59 ~GqkvV~KVirVd~--~kg~IDlS 80 (88)
T PHA02945 59 VGKTVKVKVIRVDY--TKGYIDVN 80 (88)
T ss_pred cCCEEEEEEEEECC--CCCEEEeE
Confidence 48888888887643 3 777776
No 44
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=21.16 E-value=98 Score=18.89 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=11.1
Q ss_pred CCCcEEEEEEEeec
Q 041264 71 PVSGIINIDYHGPI 84 (91)
Q Consensus 71 ~~~G~v~v~w~~v~ 84 (91)
+..|...|+|+.+.
T Consensus 69 l~~G~YtV~wrvvs 82 (97)
T PF04234_consen 69 LPPGTYTVSWRVVS 82 (97)
T ss_dssp --SEEEEEEEEEEE
T ss_pred CCCceEEEEEEEEe
Confidence 78999999999885
No 45
>PF11631 DUF3255: Protein of unknown function (DUF3255); InterPro: IPR021664 Members in this family of proteins are annotated as YxeF however no function is currently known. The family appears to be restricted to Bacillus. ; PDB: 2JOZ_A.
Probab=21.16 E-value=17 Score=23.67 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=23.8
Q ss_pred CceecCHHHHHHhcCCCCcEEEEEEEeeccCCCC
Q 041264 56 STIDLSREAFTQIANPVSGIINIDYHGPIDYLSS 89 (91)
Q Consensus 56 ~~lDLS~~AF~~la~~~~G~v~v~w~~v~~~~~~ 89 (91)
+.++|.-.|++.|.....|.|.|+|---..||.|
T Consensus 54 gev~lp~~aykvisqstdgsieiqylg~~~plks 87 (123)
T PF11631_consen 54 GEVQLPSMAYKVISQSTDGSIEIQYLGPYYPLKS 87 (123)
T ss_dssp EEEE---EEEEEEE--SSSEEEEEEESTT-S-EE
T ss_pred ccccCchhhhhheeccCCCeEEEEEcCCCcchhh
Confidence 7899999999999988899999999866688776
No 46
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=20.95 E-value=1.7e+02 Score=17.11 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=14.1
Q ss_pred CceEEEEEccCCCCCCCCCCCCeEEEEEe
Q 041264 20 GKMLRHKCTEARNAAPHPWTGNNVNVKIV 48 (91)
Q Consensus 20 G~c~~V~~~~~~~~~p~~c~g~sv~v~V~ 48 (91)
+.||+|+..+. +|+.+.++|-
T Consensus 53 ~g~yev~~~~~--------dG~~~ev~vD 73 (83)
T PF13670_consen 53 DGCYEVEARDK--------DGKKVEVYVD 73 (83)
T ss_pred CCEEEEEEEEC--------CCCEEEEEEc
Confidence 45688886553 5778777764
No 47
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=20.71 E-value=97 Score=20.41 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=23.0
Q ss_pred CceecCHHHHHHhcCCCCcEEE--EEEEee
Q 041264 56 STIDLSREAFTQIANPVSGIIN--IDYHGP 83 (91)
Q Consensus 56 ~~lDLS~~AF~~la~~~~G~v~--v~w~~v 83 (91)
++-+||++-|++|+..+.+.|+ -+|-.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~l 109 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVEL 109 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEE
Confidence 7789999999999988888776 456555
No 48
>PHA03370 virion protein US2; Provisional
Probab=20.36 E-value=1.3e+02 Score=22.54 Aligned_cols=28 Identities=18% Similarity=0.390 Sum_probs=23.4
Q ss_pred EEEEEeecCCCCC-CceecCHHHHHHhcC
Q 041264 43 VNVKIVDHCSGCP-STIDLSREAFTQIAN 70 (91)
Q Consensus 43 v~v~V~D~Cp~C~-~~lDLS~~AF~~la~ 70 (91)
.+|+..|+|..=+ +..|.++..|..|+.
T Consensus 7 TIVTllD~~~aLPg~S~Da~~~LW~FL~~ 35 (269)
T PHA03370 7 TIVTLLDECDRLPGRSRDAASTLWIFLIK 35 (269)
T ss_pred EEEEeecccCCCCCCccccCHHHHHHHHH
Confidence 3678889988777 999999999998864
No 49
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.17 E-value=76 Score=27.67 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=20.8
Q ss_pred CcEEEe--CccccCCC-CccCceEEEEEcc
Q 041264 3 CDAEAA--GDALWNNG-AVWGKMLRHKCTE 29 (91)
Q Consensus 3 ~~~aA~--s~~~~~~g-~~CG~c~~V~~~~ 29 (91)
+.|..+ +...|..| -.||-|.||-+..
T Consensus 149 ~rIir~~~~dNfW~~G~GPcGPcsEI~yD~ 178 (879)
T COG0013 149 ERIIRIGASDNFWEMGDGPCGPCSEIFYDR 178 (879)
T ss_pred HHeeecCcCCCCCCCCCcCCCCceEEEEcC
Confidence 444444 56789888 7899999999966
No 50
>PF08115 Toxin_28: SFI toxin family; InterPro: IPR012633 This family consists of the SFI family of spider toxins. This family of toxins might share structural, evolutionary and functional relationships with other small, highly structurally constrained spider neurotoxins. These toxins are highly selective agonists/antagonists of different voltage-dependent calcium channels and are extremely valuable reagents in the analysis of neuromuscular function.; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=20.06 E-value=63 Score=16.70 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=10.7
Q ss_pred CCCCccCceEEEEE
Q 041264 14 NNGAVWGKMLRHKC 27 (91)
Q Consensus 14 ~~g~~CG~c~~V~~ 27 (91)
|++..||+|++...
T Consensus 14 n~n~~~G~CL~~~~ 27 (35)
T PF08115_consen 14 NHNDCCGSCLCSNG 27 (35)
T ss_pred cCCCcccceeccCC
Confidence 66778999987654
Done!