Query 041264
Match_columns 91
No_of_seqs 137 out of 1049
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 08:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d30_A YOAJ, expansin like pro 99.9 2.4E-26 8.1E-31 162.3 8.5 76 2-88 31-111 (208)
2 2hcz_X Beta-expansin 1A; domai 99.9 4E-26 1.4E-30 164.7 9.8 81 2-87 53-142 (245)
3 1n10_A PHL P I, pollen allerge 99.9 8.2E-26 2.8E-30 162.8 8.1 81 2-88 53-143 (241)
4 1bw3_A Barwin, basic barley SE 99.8 1.4E-21 4.8E-26 128.8 5.3 69 7-86 50-124 (125)
5 1wc2_A Endoglucanase; hydrolas 99.8 4.1E-21 1.4E-25 132.9 3.0 83 2-85 46-157 (181)
6 4avr_A PA4485; unknown functio 99.6 2.9E-15 1E-19 94.5 9.4 67 2-83 27-94 (95)
7 3sul_A Cerato-platanin-like pr 98.9 5.9E-09 2E-13 68.2 8.0 61 11-84 53-116 (122)
8 3m3g_A EPL1 protein; fungal, p 98.9 5.2E-09 1.8E-13 68.3 7.4 66 4-84 45-114 (120)
9 3suk_A Cerato-platanin-like pr 98.8 9.9E-09 3.4E-13 67.4 7.1 70 4-84 46-119 (125)
10 3suj_A Cerato-platanin 1; doub 98.8 7.4E-09 2.5E-13 68.1 6.4 71 4-84 45-119 (127)
11 2kqa_A Cerato-platanin; elicit 98.8 8.4E-09 2.9E-13 67.9 6.1 67 4-84 51-120 (129)
12 3sum_A Cerato-platanin-like pr 98.8 2.5E-08 8.6E-13 66.1 8.0 63 4-84 49-121 (136)
13 2eng_A Endoglucanase V; cellul 96.8 0.001 3.4E-08 46.8 3.6 51 5-61 72-123 (210)
14 3nrl_A Uncharacterized protein 83.3 1.4 4.9E-05 26.4 3.5 25 13-48 27-51 (81)
15 2vqe_N 30S ribosomal protein S 54.1 4.8 0.00016 22.7 1.1 36 45-80 18-61 (61)
16 4b2v_A S64; toxin, ICK; NMR {S 44.0 3.8 0.00013 19.9 -0.4 11 18-28 20-30 (32)
17 2csp_A RIM-BP2, RIM binding pr 42.6 22 0.00075 23.0 3.0 21 70-90 29-50 (130)
18 3bbn_N Ribosomal protein S14; 36.6 7.2 0.00025 24.0 -0.0 39 42-80 54-100 (100)
19 2c9r_A COPC, copper resistance 33.0 34 0.0012 20.5 2.7 15 70-84 73-87 (102)
20 3r8n_N 30S ribosomal protein S 32.9 12 0.00042 23.0 0.6 38 43-80 55-100 (100)
21 1lyq_A PCOC copper resistance 31.0 39 0.0013 20.4 2.7 15 70-84 75-89 (104)
22 3gmf_A Protein-disulfide isome 30.0 22 0.00074 23.7 1.5 43 39-84 14-59 (205)
23 3gv1_A Disulfide interchange p 29.7 54 0.0019 20.6 3.3 37 39-84 13-50 (147)
24 2yuj_A Ubiquitin fusion degrad 24.7 1.6E+02 0.0056 19.8 6.6 52 22-84 63-115 (190)
25 2joz_A Hypothetical protein YX 24.6 8.9 0.0003 24.3 -1.2 34 56-89 55-88 (135)
26 3lcz_A YCZA, inhibitor of trap 23.9 54 0.0019 17.5 2.2 27 37-65 14-41 (53)
27 3gn3_A Putative protein-disulf 22.1 25 0.00087 22.8 0.7 42 40-85 14-57 (182)
28 3frn_A Flagellar protein FLGA; 21.8 74 0.0025 22.9 3.1 25 17-50 237-261 (278)
29 1zc1_A Ubiquitin fusion degrad 21.5 2E+02 0.0069 19.7 7.7 52 22-84 68-120 (208)
30 2e2z_A TIM15; protein import, 20.6 39 0.0013 20.8 1.2 12 47-58 37-49 (100)
No 1
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A
Probab=99.93 E-value=2.4e-26 Score=162.31 Aligned_cols=76 Identities=26% Similarity=0.299 Sum_probs=70.5
Q ss_pred CCcEEEeCccccCCC----CccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCC-CceecCHHHHHHhcCCCCcEE
Q 041264 2 RCDAEAAGDALWNNG----AVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCP-STIDLSREAFTQIANPVSGII 76 (91)
Q Consensus 2 ~~~~aA~s~~~~~~g----~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~-~~lDLS~~AF~~la~~~~G~v 76 (91)
++++||+++.+|++| +.||+||||+| .+++|+|+|+|+||+|+ +|||||+.||++|+.++.|++
T Consensus 31 ~~~~aAls~~~f~~G~~~~~~CG~c~~v~~-----------~~gsv~V~v~D~CP~C~~~~~DLS~~aF~~la~~~~G~i 99 (208)
T 3d30_A 31 DMEITAINPADLNYGGVKAALAGSYLEVEG-----------PKGKTTVYVTDLYPEGARGALDLSPNAFRKIGNMKDGKI 99 (208)
T ss_dssp TCCEEEECHHHHTGGGCTTTTTTCEEEEEE-----------TTEEEEEEEEEECTTCCTTCEEECHHHHHHHSCGGGSSE
T ss_pred CCEEEEeCHHHhCCCCcCccccCCEEEEEe-----------CCCcEEEEEEECCCCCCCCeEECCHHHHHHhcccCCCEE
Confidence 478999999999987 89999999999 35589999999999999 999999999999999999999
Q ss_pred EEEEEeeccCCC
Q 041264 77 NIDYHGPIDYLS 88 (91)
Q Consensus 77 ~v~w~~v~~~~~ 88 (91)
+|+|++|+++-+
T Consensus 100 ~v~~~~V~C~~~ 111 (208)
T 3d30_A 100 NIKWRVVKAPIT 111 (208)
T ss_dssp EEEEEEECCCCC
T ss_pred EEEEEEeCCCCC
Confidence 999999997653
No 2
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}
Probab=99.93 E-value=4e-26 Score=164.69 Aligned_cols=81 Identities=22% Similarity=0.325 Sum_probs=73.4
Q ss_pred CCcEEEeCccccCCCCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCC-C-CceecCHHHHHHhcC-------CC
Q 041264 2 RCDAEAAGDALWNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGC-P-STIDLSREAFTQIAN-------PV 72 (91)
Q Consensus 2 ~~~~aA~s~~~~~~g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C-~-~~lDLS~~AF~~la~-------~~ 72 (91)
+.++||+|..+|++|..||+||||+|.+ +..|.+++|+|+|||+|+.+ + .|||||+.||.+||. ..
T Consensus 53 ~~~~aAls~~lf~~G~~CG~Cy~V~c~~-----~~~C~~~sv~V~VtD~C~C~~~~~hfDLS~~AF~~iA~~g~~~~L~~ 127 (245)
T 2hcz_X 53 SGMTACGNVPIFKDGKGCGSCYEVRCKE-----KPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRH 127 (245)
T ss_dssp TTCEEEECHHHHGGGTSTTCEEEEECCS-----SSSBCSSCEEEEEEEECCCTTSSSEEEECHHHHHHTBCTTCHHHHTT
T ss_pred CCEEEEeCHHHcCCchhcCCeEEEEeCC-----CCccCCCCEEEEEEeccCCCCCCccEEcCHHHHHHHhcccccccccc
Confidence 5789999999999999999999999976 34799999999999999832 4 999999999999998 79
Q ss_pred CcEEEEEEEeeccCC
Q 041264 73 SGIINIDYHGPIDYL 87 (91)
Q Consensus 73 ~G~v~v~w~~v~~~~ 87 (91)
.|+|+|+|+||+++.
T Consensus 128 ~Gii~V~yrrV~C~~ 142 (245)
T 2hcz_X 128 CGIMDVEFRRVRCKY 142 (245)
T ss_dssp TCCEEEEEEEECCCC
T ss_pred CCEEEEEEEEEecCC
Confidence 999999999999664
No 3
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3
Probab=99.92 E-value=8.2e-26 Score=162.80 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=72.9
Q ss_pred CCcEEEeCccccCCCCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCC--C-CceecCHHHHHHhcC-------C
Q 041264 2 RCDAEAAGDALWNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGC--P-STIDLSREAFTQIAN-------P 71 (91)
Q Consensus 2 ~~~~aA~s~~~~~~g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C--~-~~lDLS~~AF~~la~-------~ 71 (91)
+.++||+|..+|++|..||+||||+|.+ +..|.+++|+|+|||+|+ | + .|||||+.||.+||. +
T Consensus 53 g~~~aAls~~lf~~G~~CG~CyeV~c~~-----~~~C~~~~v~V~VtD~C~-C~~~~~hfDLS~~AF~~iA~~g~~~~L~ 126 (241)
T 1n10_A 53 SGMTGCGNTPIFKSGRGCGSCFEIKCTK-----PEACSGEPVVVHITDDNE-EPIAPYHFDLSGHAFGAMAKKGDEQKLR 126 (241)
T ss_dssp TTCEEEECHHHHGGGTTSSCEEEEEECS-----STTBCSCCEEEEEEEECS-SCSSSSEEEEEHHHHHTTBSTTCHHHHH
T ss_pred CcEEEEeCHHHccCcccCCCeEEEEeCC-----CCccCCCCEEEEEeEecC-CCCCCcceecCHHHHHHhhccCcccccc
Confidence 4689999999999999999999999976 346999999999999995 6 3 899999999999998 6
Q ss_pred CCcEEEEEEEeeccCCC
Q 041264 72 VSGIINIDYHGPIDYLS 88 (91)
Q Consensus 72 ~~G~v~v~w~~v~~~~~ 88 (91)
..|+|+|+|+||+++.+
T Consensus 127 ~~Gii~V~yrrV~C~~~ 143 (241)
T 1n10_A 127 SAGELELQFRRVKCKYP 143 (241)
T ss_dssp TTCSEEEEEEECCCCCC
T ss_pred cCCEEEEEEEEEeCCCC
Confidence 89999999999996543
No 4
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A
Probab=99.84 E-value=1.4e-21 Score=128.81 Aligned_cols=69 Identities=29% Similarity=0.383 Sum_probs=59.4
Q ss_pred EeCcccc-CCCCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCCCceecC-HHHHHHhcC----CCCcEEEEEE
Q 041264 7 AAGDALW-NNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCPSTIDLS-REAFTQIAN----PVSGIINIDY 80 (91)
Q Consensus 7 A~s~~~~-~~g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~~~lDLS-~~AF~~la~----~~~G~v~v~w 80 (91)
|+....+ ++++.||+|++|++.. +|++|+|+|+|+||.|. |||| ++||++|+. ...|+++|+|
T Consensus 50 A~~g~~gp~~g~~CG~cv~Vtn~~---------nGksV~V~VvD~CP~gg--LDLS~~~AF~~Ia~~g~G~~~G~i~V~w 118 (125)
T 1bw3_A 50 AFCGPAGPRGQAACGKCLRVTNPA---------TGAQITARIVDQCANGG--LDLDWDTVFTKIDTNGIGYQQGHLNVNY 118 (125)
T ss_dssp ESCSTTCCCSGGGTTCEEEEEETT---------TTEEEEEEEEECCSSSS--CCSCSSSSHHHHCSSCHHHHHSEEEEEE
T ss_pred EeccCCCCCCCcccCCEEEeEeCC---------CCCEEEEEEEEeCCCCC--CCCCCHHHHHHHhccCCcccCcEEEEEE
Confidence 4444444 7789999999999954 69999999999999754 9999 999999997 6799999999
Q ss_pred EeeccC
Q 041264 81 HGPIDY 86 (91)
Q Consensus 81 ~~v~~~ 86 (91)
++|+++
T Consensus 119 ~~V~C~ 124 (125)
T 1bw3_A 119 QFVDCR 124 (125)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 999864
No 5
>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1
Probab=99.81 E-value=4.1e-21 Score=132.93 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=68.0
Q ss_pred CCcEEEeCccccCCC------CccCceEEEEEccCCCCCC-CCC-CCCeEEEEEeecCCC-------CC-----------
Q 041264 2 RCDAEAAGDALWNNG------AVWGKMLRHKCTEARNAAP-HPW-TGNNVNVKIVDHCSG-------CP----------- 55 (91)
Q Consensus 2 ~~~~aA~s~~~~~~g------~~CG~c~~V~~~~~~~~~p-~~c-~g~sv~v~V~D~Cp~-------C~----------- 55 (91)
+.++||||+.+|++| +.||+||||+|.+...... ..| .|++|+|+|||+||. |+
T Consensus 46 g~~tAALStaLFn~G~~~w~G~~CG~Cyel~c~~~~c~~cg~~~~~g~SI~VtaTN~CPpn~~nggWCn~pp~~~~~n~~ 125 (181)
T 1wc2_A 46 GSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKY 125 (181)
T ss_dssp GSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSCCCCCTTCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTT
T ss_pred cceeeecCHHHhCCCccccccccCCCcEEEEcCCCCcccccccCCCCCeEEEEEecCCCCCCCCCCccCCCcccCccccc
Confidence 467999999999997 8999999999976311000 112 378999999999993 72
Q ss_pred ---CceecCHHHHHHhcCCCCcEEEEEEEeecc
Q 041264 56 ---STIDLSREAFTQIANPVSGIINIDYHGPID 85 (91)
Q Consensus 56 ---~~lDLS~~AF~~la~~~~G~v~v~w~~v~~ 85 (91)
.||||+..| .+|+....|+++|+||||++
T Consensus 126 G~~~HFDLs~pa-~~Ia~~~~GivpV~yrrV~C 157 (181)
T 1wc2_A 126 GYELHLDLENGR-SQVTGMGWNNPETTWEVVNC 157 (181)
T ss_dssp SCSEEEEEECTT-STTGGGTCSSEEEEEEEECH
T ss_pred CccccccccchH-HHhhhhcCCCceeEEEEEeC
Confidence 599999999 89998899999999999985
No 6
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}
Probab=99.62 E-value=2.9e-15 Score=94.50 Aligned_cols=67 Identities=21% Similarity=0.184 Sum_probs=58.8
Q ss_pred CCcEEEeCccccCCCCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCC-CceecCHHHHHHhcCCCCcEEEEEE
Q 041264 2 RCDAEAAGDALWNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCP-STIDLSREAFTQIANPVSGIINIDY 80 (91)
Q Consensus 2 ~~~~aA~s~~~~~~g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~-~~lDLS~~AF~~la~~~~G~v~v~w 80 (91)
..|+||-. ...||..++|++.. +|++|+|+|.|+||.|+ +.||||++||++|+..+.|+.+|+|
T Consensus 27 ~~~tAAH~------tlP~gt~vrVtNl~---------nGksVvVrVnDRGP~~~griIDLS~aAa~~Lg~~~~G~~~V~v 91 (95)
T 4avr_A 27 NAMTAAHR------TLPFGARVRVTNLD---------NRRSVVVRINDRGPFRRGRIIDVSRKAAEGLGMIRSGVAPVRI 91 (95)
T ss_dssp TSCEEECS------SSCTTCEEEEEETT---------TCCEEEEEEEECCCCSTTEEEEECHHHHHHHTCTTTSCEEEEE
T ss_pred CCCEEEcC------CCCCCcEEEEEECC---------CCcEEEEEEccCCCCCCCCEEEeCHHHHHHhCCcCCCEEEEEE
Confidence 34555543 23699999999976 89999999999999999 9999999999999999999999999
Q ss_pred Eee
Q 041264 81 HGP 83 (91)
Q Consensus 81 ~~v 83 (91)
+.+
T Consensus 92 e~~ 94 (95)
T 4avr_A 92 ESL 94 (95)
T ss_dssp EEC
T ss_pred EEe
Confidence 965
No 7
>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa}
Probab=98.91 E-value=5.9e-09 Score=68.18 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=52.2
Q ss_pred cccCCCCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCCCceecCHHHHHHhcCC---CCcEEEEEEEeec
Q 041264 11 ALWNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIANP---VSGIINIDYHGPI 84 (91)
Q Consensus 11 ~~~~~g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~~~lDLS~~AF~~la~~---~~G~v~v~w~~v~ 84 (91)
.-||+ +.||.|+++++.. +|++|.+..+|.-+ ..|+|+.+||+.|.+- +.|+|+++|++|+
T Consensus 53 ~gwnS-~~CGtC~~lty~~---------~g~si~vlaID~a~---~Gfnis~~Amn~LT~G~a~~lG~V~a~~~qV~ 116 (122)
T 3sul_A 53 TGWNS-ESCGTCYQITWSG---------TGKTIHVVGVDVAG---NGFNVGQRAMDDLTNGQAVALGNIDVTATLVD 116 (122)
T ss_dssp CSTTC-TTTTCEEEEEETT---------TTEEEEEEEEEECS---SSEEECHHHHHHHHTSCHHHHSEEEEEEEEEC
T ss_pred ccCCC-CCCCceEEEEEcC---------CCcEEEEEEEecCC---CceeehHHHHHHhcCCcceecceEeEEEEEcC
Confidence 55876 9999999999932 48999999999853 7799999999999853 4599999999996
No 8
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}
Probab=98.90 E-value=5.2e-09 Score=68.27 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=54.5
Q ss_pred cEEEeC-ccccCCCCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCCCceecCHHHHHHhcC-C--CCcEEEEE
Q 041264 4 DAEAAG-DALWNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIAN-P--VSGIINID 79 (91)
Q Consensus 4 ~~aA~s-~~~~~~g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~~~lDLS~~AF~~la~-~--~~G~v~v~ 79 (91)
+|.+.. -.-|| .+.||.|+++++ +|++|.+..+|.- +..|+|+.+||+.|.+ . +.|+|+++
T Consensus 45 ~IGg~~~i~gwn-s~~CGtC~~lty-----------~g~si~vlaID~a---~~Gfnis~~A~n~LT~G~a~~lG~V~a~ 109 (120)
T 3m3g_A 45 YIGGAAAVAGWN-SASCGTCWKLQY-----------SGHTIYVLAVDHA---ASGFNIALDAMNALTGGQAVQLGRVSAT 109 (120)
T ss_dssp SEEEETTCCSTT-CTTTTCEEEEEE-----------TTEEEEEEEEEEC---SSSEEECHHHHHHHHTSCHHHHCEEECE
T ss_pred ccccccccccCC-CCCCCceEEEEE-----------CCeEEEEEEEecC---CCceeecHHHHHHhhCCcceeeeeEeEE
Confidence 454443 24576 589999999999 7999999999985 3779999999999985 3 35999999
Q ss_pred EEeec
Q 041264 80 YHGPI 84 (91)
Q Consensus 80 w~~v~ 84 (91)
|++|+
T Consensus 110 ~~~V~ 114 (120)
T 3m3g_A 110 ATQVP 114 (120)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 99996
No 9
>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}
Probab=98.84 E-value=9.9e-09 Score=67.38 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=54.4
Q ss_pred cEEEeCc-cccCCCCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCCCceecCHHHHHHhcCC---CCcEEEEE
Q 041264 4 DAEAAGD-ALWNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIANP---VSGIINID 79 (91)
Q Consensus 4 ~~aA~s~-~~~~~g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~~~lDLS~~AF~~la~~---~~G~v~v~ 79 (91)
+|.+... .-|| .+.||.|+|+++.+. . ..++|.+..+|.-. ..|+|+.+||+.|.+- ..|+|+++
T Consensus 46 ~IGg~~~i~gwn-S~~CGtC~~lty~g~-----~--~~~si~vlaID~a~---~Gfnis~~Amn~LT~G~a~~lG~V~~~ 114 (125)
T 3suk_A 46 HIGASSDIGGFN-SPACGNCYTISFTFQ-----G--VTRSINLVAIDHAG---NGFNVAQAAMDELTNGNAVALGTIDVQ 114 (125)
T ss_dssp SEEEETTCCSTT-CTTTTCEEEEEEEET-----T--EEEEEEEEEEEECS---SSEEECHHHHHHHHTSCHHHHCEEEEE
T ss_pred eeccccccccCC-CCCCCeeEEEEEcCC-----C--cceEEEEEEEecCC---CceeecHHHHHHhcCCcccccceEeEE
Confidence 4555443 4576 589999999999320 0 23899999999853 6799999999999853 45999999
Q ss_pred EEeec
Q 041264 80 YHGPI 84 (91)
Q Consensus 80 w~~v~ 84 (91)
|++|+
T Consensus 115 ~~~V~ 119 (125)
T 3suk_A 115 SQQVA 119 (125)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 99996
No 10
>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}
Probab=98.84 E-value=7.4e-09 Score=68.13 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=54.2
Q ss_pred cEEEeC-ccccCCCCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCCCceecCHHHHHHhcCC---CCcEEEEE
Q 041264 4 DAEAAG-DALWNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIANP---VSGIINID 79 (91)
Q Consensus 4 ~~aA~s-~~~~~~g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~~~lDLS~~AF~~la~~---~~G~v~v~ 79 (91)
+|.+.. -.-|| .+.||.|+++++.+.. -..++|.+..+|.-+ ..|+|+.+||+.|.+- ..|+|+++
T Consensus 45 ~IGg~~~i~gwn-s~~CGtC~~lty~g~~------~~~~si~vlaID~a~---~Gfnis~~Amn~LT~g~a~~lG~V~~~ 114 (127)
T 3suj_A 45 CIGGSSDIAGYN-SPNCGSCYQLTYSSAH------TTPKSIYMVAIDRSA---EGFTASKQAMDDLTNKRAEELGTVNVD 114 (127)
T ss_dssp SEEEETTCCSTT-CTTTTCEEEEEECCSS------SCCEEEEEEEEEECS---SSEEECHHHHHHHHTSCHHHHSSEEEE
T ss_pred eeccccccccCC-CCCCCceEEEEECCCC------CcceEEEEEEEecCC---CceeecHHHHHHhcCCccccceeEEEE
Confidence 444443 34576 5899999999994210 023899999999853 7799999999999853 45899999
Q ss_pred EEeec
Q 041264 80 YHGPI 84 (91)
Q Consensus 80 w~~v~ 84 (91)
|++|+
T Consensus 115 ~~~V~ 119 (127)
T 3suj_A 115 VRKVD 119 (127)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99996
No 11
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani}
Probab=98.82 E-value=8.4e-09 Score=67.95 Aligned_cols=67 Identities=19% Similarity=0.342 Sum_probs=56.4
Q ss_pred cEEEeC-ccccCCCCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCCCceecCHHHHHHhcC-CCCcEE-EEEE
Q 041264 4 DAEAAG-DALWNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCPSTIDLSREAFTQIAN-PVSGII-NIDY 80 (91)
Q Consensus 4 ~~aA~s-~~~~~~g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~~~lDLS~~AF~~la~-~~~G~v-~v~w 80 (91)
+|.+.. -.-|| .+.||.|++|++. +|++|.+..+|.-+ +.|+++.+||+.|++ ...|+| +++|
T Consensus 51 ~IGga~~iagWN-S~~CGtC~~lty~----------ng~sI~vlaID~A~---~gFnIs~~Amn~LT~G~~lG~V~~a~~ 116 (129)
T 2kqa_A 51 NVGGIPDIAGWD-SPSCGTCWKVTIP----------NGNSIFIRGVDSGR---GGFNVNPTAFTKLVGSTEAGRVDNVNY 116 (129)
T ss_dssp SEEEETTCCSTT-CTTCSCEEEEEET----------TTEEEEEEEEEECS---SSEEECHHHHHHHHSSSSSCCBCSCEE
T ss_pred eeccchhhccCC-CCCCCceEEEEEc----------CCCEEEEEEEccCC---CceeehHHHHHHhcCCcccCcEeEEEE
Confidence 444443 34487 7999999999993 58999999999954 689999999999985 789999 9999
Q ss_pred Eeec
Q 041264 81 HGPI 84 (91)
Q Consensus 81 ~~v~ 84 (91)
++|.
T Consensus 117 ~qV~ 120 (129)
T 2kqa_A 117 VQVD 120 (129)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9986
No 12
>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa}
Probab=98.80 E-value=2.5e-08 Score=66.13 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=53.2
Q ss_pred cEEEeCccccCCCCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCCCc--eecCHHHHHHhcCC-------CCc
Q 041264 4 DAEAAGDALWNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCPST--IDLSREAFTQIANP-------VSG 74 (91)
Q Consensus 4 ~~aA~s~~~~~~g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~~~--lDLS~~AF~~la~~-------~~G 74 (91)
+|.|+. || .+.||.|++|++ +|++|.+..+|.-. .. ||||.+||+.|.+- ..|
T Consensus 49 ~igg~~---wn-s~~CGtCwkLtY-----------~G~sI~vlaID~a~---~g~~FnIs~~Amn~LT~G~~a~~a~elG 110 (136)
T 3sum_A 49 HFVAAP---EA-QTECGSCWKLRY-----------KGNHAFVTVVDRVE---EANLFVGGTDLVKNLTTFNGAPEGYDWG 110 (136)
T ss_dssp SEEECC---BT-TBCTTCEEEEEE-----------TTEEEEEEEEECCC---STTEEEECHHHHHHHTCBTTBCHHHHHS
T ss_pred cccccc---cC-CCCCCceEEEEE-----------CCeEEEEEEEecCC---CcceEeehHHHHHHHhCCCccccceecc
Confidence 456655 76 688999999999 79999999999853 55 99999999999853 359
Q ss_pred EEEE-EEEeec
Q 041264 75 IINI-DYHGPI 84 (91)
Q Consensus 75 ~v~v-~w~~v~ 84 (91)
+|++ +|++|.
T Consensus 111 ~Vda~~~~qVd 121 (136)
T 3sum_A 111 TAQLFSAYQVD 121 (136)
T ss_dssp EEECSEEEEEC
T ss_pred eeeeeEEEEcC
Confidence 9999 999996
No 13
>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A
Probab=96.79 E-value=0.001 Score=46.80 Aligned_cols=51 Identities=18% Similarity=0.100 Sum_probs=33.6
Q ss_pred EEEeCccccCCCCccCceEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCC-CceecC
Q 041264 5 AEAAGDALWNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCP-STIDLS 61 (91)
Q Consensus 5 ~aA~s~~~~~~g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~-~~lDLS 61 (91)
|||.+-.--.....|++||+++-++. ...||..+|+|++....=. +||||.
T Consensus 72 FaA~~~~g~~e~~~Cc~C~~LtFt~~------~~~GKkmiVQ~TNtG~Dl~~n~FDl~ 123 (210)
T 2eng_A 72 FAATSIAGSNEAGWCCACYELTFTSG------PVAGKKMVVQSTSTGGDLGSNHFDLN 123 (210)
T ss_dssp EEEEECTTCCHHHHTTCEEEEEECSG------GGTTCEEEEEEEEC-----CCEEEEE
T ss_pred eeeeeccCCccccccceeEEEEEcCC------CcCCCEEEEEEecccCCCCCCceeEe
Confidence 46655221112357999999999763 2379999999999987656 999985
No 14
>3nrl_A Uncharacterized protein rumgna_01417; beta protein, structural genomics, PSI-2, protein structure initiative; 1.90A {Ruminococcus gnavus}
Probab=83.31 E-value=1.4 Score=26.39 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=19.6
Q ss_pred cCCCCccCceEEEEEccCCCCCCCCCCCCeEEEEEe
Q 041264 13 WNNGAVWGKMLRHKCTEARNAAPHPWTGNNVNVKIV 48 (91)
Q Consensus 13 ~~~g~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~ 48 (91)
|.+|-.||.|++|.- +++.+-++|-
T Consensus 27 ~ygGlHCGE~feV~v-----------~~~WiptRiE 51 (81)
T 3nrl_A 27 FYGGLHCGECFDVKV-----------KDVWVPVRIE 51 (81)
T ss_dssp ECCCCCTTCEEEEEE-----------TTEEEEEEEE
T ss_pred ccCCcccccEEEEEE-----------CCEEEEEEEE
Confidence 456889999999988 6777766664
No 15
>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
Probab=54.08 E-value=4.8 Score=22.67 Aligned_cols=36 Identities=19% Similarity=0.487 Sum_probs=28.3
Q ss_pred EEEeecCCCCC------CceecCHHHHHHhc--CCCCcEEEEEE
Q 041264 45 VKIVDHCSGCP------STIDLSREAFTQIA--NPVSGIINIDY 80 (91)
Q Consensus 45 v~V~D~Cp~C~------~~lDLS~~AF~~la--~~~~G~v~v~w 80 (91)
+.+.++|.-|+ ..|.|+.-.|.++| +.=+|+.+-+|
T Consensus 18 ~r~~nRC~~~GR~rg~iRkfglcR~~FRe~A~~g~lpGv~KasW 61 (61)
T 2vqe_N 18 VRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW 61 (61)
T ss_dssp GGCCCCCTTTCCCTTCCTTTSSCHHHHHHHHHHTCSSSCEECCC
T ss_pred CCCceeeecCCCCceeeccCceeHHHHHHHHhCCccCCeEeeeC
Confidence 45667888765 67899999999998 45688877666
No 16
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=44.00 E-value=3.8 Score=19.87 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=8.9
Q ss_pred ccCceEEEEEc
Q 041264 18 VWGKMLRHKCT 28 (91)
Q Consensus 18 ~CG~c~~V~~~ 28 (91)
-||+|++-.|.
T Consensus 20 ccgrcirnecr 30 (32)
T 4b2v_A 20 CCGRCIRNECR 30 (32)
T ss_dssp CSSEEETTEEE
T ss_pred hhhHHHHhhhc
Confidence 48999988774
No 17
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=42.61 E-value=22 Score=22.95 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=17.3
Q ss_pred CCCCcEEEEEEEeec-cCCCCC
Q 041264 70 NPVSGIINIDYHGPI-DYLSSS 90 (91)
Q Consensus 70 ~~~~G~v~v~w~~v~-~~~~~~ 90 (91)
....|.+-|+|..|. ++..+|
T Consensus 29 Gp~pgtLlVsW~Pvt~~~~g~S 50 (130)
T 2csp_A 29 GVTPATIRVSWRPPVLTPTGLS 50 (130)
T ss_dssp CSSTTEEEEEEECCCCCTTSCS
T ss_pred CCCCcEEEEEeECCcccCCCCC
Confidence 568899999999997 776655
No 18
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=36.58 E-value=7.2 Score=24.00 Aligned_cols=39 Identities=10% Similarity=0.236 Sum_probs=30.4
Q ss_pred eEEEEEeecCCCCC------CceecCHHHHHHhcC--CCCcEEEEEE
Q 041264 42 NVNVKIVDHCSGCP------STIDLSREAFTQIAN--PVSGIINIDY 80 (91)
Q Consensus 42 sv~v~V~D~Cp~C~------~~lDLS~~AF~~la~--~~~G~v~v~w 80 (91)
+-.+.+.++|.-|+ ..|.||.-.|..+|. .=+|+.+-+|
T Consensus 54 s~~~r~~nRC~~tGR~rg~~r~fglsR~~fRe~a~~g~lpGv~KssW 100 (100)
T 3bbn_N 54 SAPARLHRRCFLTGRPRANIRDFGLSGHILREMVHTCLLPGATRSSW 100 (100)
T ss_dssp CCGGGCCCCCSSSCCSSSBCTTTCSBTTHHHHHHTTTCSSSCEECCC
T ss_pred cccccccccccCCCCCceeecccCcHHHHHHHHHHcCCCCCeeeccC
Confidence 33467788999765 689999999999984 4578877666
No 19
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=33.04 E-value=34 Score=20.53 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=13.3
Q ss_pred CCCCcEEEEEEEeec
Q 041264 70 NPVSGIINIDYHGPI 84 (91)
Q Consensus 70 ~~~~G~v~v~w~~v~ 84 (91)
.+..|...|+|+.++
T Consensus 73 ~L~~G~YtV~WrvvS 87 (102)
T 2c9r_A 73 PLTAGTYKVDWRAVS 87 (102)
T ss_dssp CCCSEEEEEEEEECC
T ss_pred CCCCceEEEEEEEEe
Confidence 578999999999886
No 20
>3r8n_N 30S ribosomal protein S14; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_N 1p87_N 2aw7_N 2avy_N 2i2u_N 2i2p_N* 2qan_N* 2qb9_N* 2qbb_N* 2qbd_N 2qbf_N 2qbh_N* 2qbj_N* 2qou_N* 2qow_N* 2qoy_N* 2qp0_N* 2vho_N 2vhp_N 2ykr_N ...
Probab=32.87 E-value=12 Score=23.01 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=29.6
Q ss_pred EEEEEeecCCCCC------CceecCHHHHHHhc--CCCCcEEEEEE
Q 041264 43 VNVKIVDHCSGCP------STIDLSREAFTQIA--NPVSGIINIDY 80 (91)
Q Consensus 43 v~v~V~D~Cp~C~------~~lDLS~~AF~~la--~~~~G~v~v~w 80 (91)
--+.+.++|.-|+ ..|-||.-.|..+| +.=+|+.+-+|
T Consensus 55 s~~r~~nRC~~tGR~rg~~r~f~lsR~~fRe~a~~g~lpGv~KasW 100 (100)
T 3r8n_N 55 SPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW 100 (100)
T ss_dssp SGGGCCCCBTTTBCSSSCCGGGTSCHHHHHHHHHHSCSTTEEECCC
T ss_pred chhhhcccccCCCCCceecCCCCchHHHHHHHHHcCCCCCeeeccC
Confidence 3456778888654 68999999999998 45689887766
No 21
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A
Probab=30.98 E-value=39 Score=20.39 Aligned_cols=15 Identities=13% Similarity=0.248 Sum_probs=13.3
Q ss_pred CCCCcEEEEEEEeec
Q 041264 70 NPVSGIINIDYHGPI 84 (91)
Q Consensus 70 ~~~~G~v~v~w~~v~ 84 (91)
.+..|...|+|+.++
T Consensus 75 ~L~~G~YtV~WrvvS 89 (104)
T 1lyq_A 75 PLPAGTYRVDWRAVS 89 (104)
T ss_dssp CCCSEEEEEEEEECC
T ss_pred CCCCceEEEEEEEEe
Confidence 578999999999886
No 22
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=30.03 E-value=22 Score=23.68 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=27.6
Q ss_pred CCCeEEEEEee-cCCCCCCceecCHHHHHHhc-CC-CCcEEEEEEEeec
Q 041264 39 TGNNVNVKIVD-HCSGCPSTIDLSREAFTQIA-NP-VSGIINIDYHGPI 84 (91)
Q Consensus 39 ~g~sv~v~V~D-~Cp~C~~~lDLS~~AF~~la-~~-~~G~v~v~w~~v~ 84 (91)
+++-++|...| .||-|..- .+..+..|. .. +.|.|.+.|+-++
T Consensus 14 ~a~vtivef~D~~Cp~C~~~---~~~~~~~l~~~~i~~g~v~~v~r~~p 59 (205)
T 3gmf_A 14 AAKLRLVEFVSYTCPHCSHF---EIESEGQLKIGMVQPGKGAIEVRNFV 59 (205)
T ss_dssp TCSEEEEEEECTTCHHHHHH---HHHHHHHHHHHTTTTTSEEEEEEECC
T ss_pred CCCeEEEEEECCCCHHHHHH---HHHHHHHHHHHhccCCeEEEEEEeCC
Confidence 34445556667 58888721 145555554 32 6899999999875
No 23
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=29.67 E-value=54 Score=20.57 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=22.6
Q ss_pred CCCeEEEEEee-cCCCCCCceecCHHHHHHhcCCCCcEEEEEEEeec
Q 041264 39 TGNNVNVKIVD-HCSGCPSTIDLSREAFTQIANPVSGIINIDYHGPI 84 (91)
Q Consensus 39 ~g~sv~v~V~D-~Cp~C~~~lDLS~~AF~~la~~~~G~v~v~w~~v~ 84 (91)
+++.+++..+| .||-|.. ++..|..+ +.+.|.|+.++
T Consensus 13 ~a~~~vv~f~D~~Cp~C~~-------~~~~l~~l--~~v~v~~~~~P 50 (147)
T 3gv1_A 13 NGKLKVAVFSDPDCPFCKR-------LEHEFEKM--TDVTVYSFMMP 50 (147)
T ss_dssp TCCEEEEEEECTTCHHHHH-------HHHHHTTC--CSEEEEEEECC
T ss_pred CCCEEEEEEECCCChhHHH-------HHHHHhhc--CceEEEEEEcc
Confidence 46667777778 6888871 11122222 56888888665
No 24
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.72 E-value=1.6e+02 Score=19.81 Aligned_cols=52 Identities=4% Similarity=0.122 Sum_probs=41.2
Q ss_pred eEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCC-CceecCHHHHHHhcCCCCcEEEEEEEeec
Q 041264 22 MLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCP-STIDLSREAFTQIANPVSGIINIDYHGPI 84 (91)
Q Consensus 22 c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~-~~lDLS~~AF~~la~~~~G~v~v~w~~v~ 84 (91)
-|++++.. +++.+.+=|.+.=. + +.+-|+...++.|.-....+|.|++..++
T Consensus 63 ~F~l~n~~---------~~r~th~GVlEFsA--~EG~i~lP~wmm~~L~l~~gd~V~v~~~~LP 115 (190)
T 2yuj_A 63 LFKLTNKN---------SDRMTHCGVLEFVA--DEGICYLPHWMMQNLLLEEGGLVQVESVNLQ 115 (190)
T ss_dssp EEEEEETT---------TTEEEEEEEEECCC--BTTBEECCSHHHHHHTCCTTEEEEEEEECCC
T ss_pred EEEEecCC---------CCceEEEEEEEEec--CCCeEEeCHHHHHhcCCCCCCEEEEEEeecC
Confidence 57888854 56778888888653 4 88999999999998666678999988664
No 25
>2joz_A Hypothetical protein YXEF; structure, GFT, NESG, lipoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.60.1.1
Probab=24.56 E-value=8.9 Score=24.30 Aligned_cols=34 Identities=32% Similarity=0.498 Sum_probs=30.3
Q ss_pred CceecCHHHHHHhcCCCCcEEEEEEEeeccCCCC
Q 041264 56 STIDLSREAFTQIANPVSGIINIDYHGPIDYLSS 89 (91)
Q Consensus 56 ~~lDLS~~AF~~la~~~~G~v~v~w~~v~~~~~~ 89 (91)
+.++|.-.||+.|.....|.|.|+|---..||.|
T Consensus 55 gev~lp~~aykvisq~tdgsieiqylg~~~p~ks 88 (135)
T 2joz_A 55 GEVQLPFMAYKVISQSTDGSIEIQYLGPYYPLKS 88 (135)
T ss_dssp EEEECCCEEEEEEECCSSSEEEEEEESTTCSCEE
T ss_pred ceeccchhhhhheeccCCCeEEEEEcCCCcchhh
Confidence 7899999999999988999999999876788876
No 26
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=23.91 E-value=54 Score=17.50 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=16.4
Q ss_pred CCCCCeEEEEEeecCCCCC-CceecCHHHH
Q 041264 37 PWTGNNVNVKIVDHCSGCP-STIDLSREAF 65 (91)
Q Consensus 37 ~c~g~sv~v~V~D~Cp~C~-~~lDLS~~AF 65 (91)
.|.|..-. |.|.|+.|. ..+-....-|
T Consensus 14 ~C~GsG~~--i~~~C~~C~G~G~v~~~~G~ 41 (53)
T 3lcz_A 14 NCNGSGRE--EPEPCPKCLGKGVILTAQGS 41 (53)
T ss_dssp TTTTSCEE--TTEECTTTTTSSEEECHHHH
T ss_pred CCcccccC--CCCcCCCCCCcEEEEEEeCc
Confidence 56665433 248999999 5555544443
No 27
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=22.13 E-value=25 Score=22.83 Aligned_cols=42 Identities=10% Similarity=0.147 Sum_probs=24.7
Q ss_pred CCeEEEEEee-cCCCCC-CceecCHHHHHHhcCCCCcEEEEEEEeecc
Q 041264 40 GNNVNVKIVD-HCSGCP-STIDLSREAFTQIANPVSGIINIDYHGPID 85 (91)
Q Consensus 40 g~sv~v~V~D-~Cp~C~-~~lDLS~~AF~~la~~~~G~v~v~w~~v~~ 85 (91)
++-+++...| .||-|. -+-.|- ...++ ...|.|.+.|+.++-
T Consensus 14 a~vtiv~f~D~~Cp~C~~~~~~~~-~~l~~---~~~g~v~~v~r~~p~ 57 (182)
T 3gn3_A 14 GPRLFEVFLEPTCPFSVKAFFKLD-DLLAQ---AGEDNVTVRIRLQSQ 57 (182)
T ss_dssp CSEEEEEEECTTCHHHHHHHTTHH-HHHHH---HCTTTEEEEEEECCC
T ss_pred CCEEEEEEECCCCHhHHHHHHHHH-HHHHH---hCCCCEEEEEEEcCC
Confidence 3344555566 588887 232222 22233 247899999998863
No 28
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=21.77 E-value=74 Score=22.87 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=19.8
Q ss_pred CccCceEEEEEccCCCCCCCCCCCCeEEEEEeec
Q 041264 17 AVWGKMLRHKCTEARNAAPHPWTGNNVNVKIVDH 50 (91)
Q Consensus 17 ~~CG~c~~V~~~~~~~~~p~~c~g~sv~v~V~D~ 50 (91)
..=|.-++|++.+ +|+.|.++|+|.
T Consensus 237 Ga~Gd~IRVrNl~---------SgkiV~G~V~~~ 261 (278)
T 3frn_A 237 GYLGETVRAMNVE---------SRKYVFGRVERG 261 (278)
T ss_dssp BCTTCEEEEEC-----------CCCEEEEEEETT
T ss_pred CCCCCEEEEEECC---------CCCEEEEEEecC
Confidence 3469999999976 799999999975
No 29
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=21.49 E-value=2e+02 Score=19.67 Aligned_cols=52 Identities=10% Similarity=0.180 Sum_probs=41.4
Q ss_pred eEEEEEccCCCCCCCCCCCCeEEEEEeecCCCCC-CceecCHHHHHHhcCCCCcEEEEEEEeec
Q 041264 22 MLRHKCTEARNAAPHPWTGNNVNVKIVDHCSGCP-STIDLSREAFTQIANPVSGIINIDYHGPI 84 (91)
Q Consensus 22 c~~V~~~~~~~~~p~~c~g~sv~v~V~D~Cp~C~-~~lDLS~~AF~~la~~~~G~v~v~w~~v~ 84 (91)
-++|++.. +++.+.+=|.+.=. . +.+-|+...++.|.-.....|.|++...+
T Consensus 68 ~F~l~n~~---------~~~~th~GVlEF~A--~EG~v~lP~wmm~~L~l~~gd~V~i~~~~LP 120 (208)
T 1zc1_A 68 LFKLTANE---------TGRVTHGGVLEFIA--EEGRVYLPQWMMETLGIQPGSLLQISSTDVP 120 (208)
T ss_dssp CEEEECTT---------TCCEEEEEEEEECC--SSCEEEECHHHHHHHTCCTTCEEEEEEEECC
T ss_pred EEEEEeCC---------CCCEEEEEEEEEEc--CCCeEEcCHHHHHhcCCCCCCEEEEEEeEcC
Confidence 47888744 57888888888754 5 88999999999998656668999988765
No 30
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=20.63 E-value=39 Score=20.80 Aligned_cols=12 Identities=17% Similarity=0.683 Sum_probs=8.3
Q ss_pred EeecCCCCC-Cce
Q 041264 47 IVDHCSGCP-STI 58 (91)
Q Consensus 47 V~D~Cp~C~-~~l 58 (91)
|.=+||+|. .|+
T Consensus 37 Viv~C~gC~n~Hl 49 (100)
T 2e2z_A 37 VLISCPHCKVRHL 49 (100)
T ss_dssp EEEECTTTCCEEE
T ss_pred EEEEcCCCccceE
Confidence 444899998 544
Done!