BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041265
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 137/370 (37%), Positives = 179/370 (48%), Gaps = 90/370 (24%)
Query: 3 TIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHV 55
TIRQ GL E+ +D VGHSSTSISAG +G+AV + GKN
Sbjct: 97 TIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAG----------IGIAVAAEKEGKNRRT 146
Query: 56 ISVIVEGATIARMSYEAIN----------------------NAGVLNKALKRLHSNPQFR 93
+ VI +GA A ++EA N N G LN L +L S +
Sbjct: 147 VCVIGDGAITAGXAFEAXNHAGDIRPDXLVILNDNEXSISENVGALNNHLAQLLSGKLYS 206
Query: 94 QLCQEAFSSKDKKQKFGG--QMHEIDAFSREIEAGS--RACFFEDLGLYYIGPVDGHNLE 149
L + K+ F G + E+ + E G FE+LG YIGPVDGH++
Sbjct: 207 SLREGG------KKVFSGVPPIKELLKRTEEHIKGXVVPGTLFEELGFNYIGPVDGHDVL 260
Query: 150 DLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLKLQQ----------------------- 186
L LK + + P +H+ T+K + P +
Sbjct: 261 GLITTLKNXRDLKGP--QFLHIXTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGL 318
Query: 187 ---TRLFCKIL------DNRMGG-------GTGLNLFQKHFPIRCFDVGIAEQHAVTFAA 230
+++F L DN++ G+G F + FP R FDV IAEQHAVTFAA
Sbjct: 319 PSYSKIFGDWLCETAAKDNKLXAITPAXREGSGXVEFSRKFPDRYFDVAIAEQHAVTFAA 378
Query: 231 GLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTT 290
GLA G KP AIYS+FLQR +DQV HDV +QKLPV FAIDRAG+VGADG TH GAFD +
Sbjct: 379 GLAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLS 438
Query: 291 FMACLPNMVV 300
++ C+P V+
Sbjct: 439 YLRCIPEXVI 448
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 169/352 (48%), Gaps = 80/352 (22%)
Query: 11 ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSY 70
E+ HDA VGH+STS++ L GMA+ RD GK+ HV +VI +G+ M+
Sbjct: 114 ESEHDAITVGHASTSLTNAL----------GMALARDAQGKDFHVAAVIGDGSLTGGMAL 163
Query: 71 EAIN----------------------NAGVLNKALKRLHSNPQFRQLCQEAFSSKDK--- 105
A+N N G +NK ++ L Q ++ QE + K
Sbjct: 164 AALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMRGL----QVQKWFQEGEGAGKKAVE 219
Query: 106 --KQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPD 163
+ M +R + F +G+ Y+GPVDGHN+++L ++L+++ +
Sbjct: 220 AVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVDLDG 279
Query: 164 PGAVLIHVITEKEKAML-----------PLKLQ--------------------------Q 186
P ++H++T K K + P K +
Sbjct: 280 P--TILHIVTTKGKGLSYAEADPIYWHGPAKFDPATGEYVPSSAYSWSAAFGEAVTEWAK 337
Query: 187 TRLFCKILDNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSS 246
T ++ M G+GL F + P R DVGIAE+ AVT AAG+A +G++P AIYS+
Sbjct: 338 TDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYST 397
Query: 247 FLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNM 298
FLQR +DQV HDV ++ L V F IDRAG+VGADG TH G FD +F+ +P +
Sbjct: 398 FLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGV 449
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 194 LDNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLK-PFCAIYSSFLQRCF 252
LD T +F+K P R + IAEQ+ V+ A G A PFC+ +++F R F
Sbjct: 336 LDGDTKNSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAF 395
Query: 253 DQVAHDVDLQKLPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVV 300
DQ+ + + + G+ +G DGP+ D +P V
Sbjct: 396 DQIRM-AAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTV 443
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 194 LDNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLK-PFCAIYSSFLQRCF 252
LD T +F+K P R + IAEQ+ V+ A G A PFC+ +++F R F
Sbjct: 334 LDGDTKNSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAF 393
Query: 253 DQVAHDVDLQKLPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVV 300
DQ+ + + + G+ +G DGP+ D +P V
Sbjct: 394 DQIRM-AAISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTV 441
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 206 LFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAI-YSSFLQRCFDQVAHDV 259
L QK+ P R D ++E V A G+AA GL+P I ++ ++ FDQ+ V
Sbjct: 44 LLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQV 98
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|D Chain D, Human Pyruvate Dehydrogenase S264e Variant
Length = 341
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 206 LFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYS-SFLQRCFDQVAHDV----- 259
L++K+ R D I+E A G A GL+P C + +F + DQV +
Sbjct: 55 LWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYY 114
Query: 260 ---DLQKLPVRF 268
LQ +P+ F
Sbjct: 115 MSGGLQPVPIVF 126
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|J Chain J, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|L Chain L, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|N Chain N, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|P Chain P, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|R Chain R, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|T Chain T, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|V Chain V, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|X Chain X, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Z Chain Z, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|2 Chain 2, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|4 Chain 4, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|6 Chain 6, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXI|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 329
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 206 LFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYS-SFLQRCFDQVAHDV----- 259
L++K+ R D I+E A G A GL+P C + +F + DQV +
Sbjct: 43 LWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYY 102
Query: 260 ---DLQKLPVRF 268
LQ +P+ F
Sbjct: 103 MSGGLQPVPIVF 114
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 206 LFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAI-YSSFLQRCFDQV 255
L+++ P R D + E + FA G+A GLKP I + F+ D++
Sbjct: 91 LYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADEL 141
>pdb|3AL5|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL5|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL5|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL5|D Chain D, Crystal Structure Of Human Tyw5
pdb|3AL6|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL6|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL6|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL6|D Chain D, Crystal Structure Of Human Tyw5
Length = 338
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 201 GTGLNLFQKHFPIRCFD----VGIAEQHAVTFAAGLAAEGLKPFCAI---YSSFLQR 250
G G+N+F KH P C+D G + A + AA + LK + Y F R
Sbjct: 266 GVGVNIFWKHLPSECYDKTDTYGNKDPTAASRAAQILDRALKTLAELPEEYRDFYAR 322
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|D Chain D, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|F Chain F, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|H Chain H, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 339
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 205 NLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAI-YSSFLQRCFDQVAHDV 259
L K+ R FD I+E V A G+ A GL+P I ++ + DQ+ ++
Sbjct: 45 GLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEM 100
>pdb|4HPZ|A Chain A, Crystal Structure Of A Tale Protein Reveals An Extended
N-terminal Dna Binding Region
Length = 463
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query: 127 SRACFFEDLGLYYIGPVDGHNLE-DLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLKLQ 185
S AC E L L G + G L+ D +LK K AV +H PL L
Sbjct: 86 SGACALEAL-LTVAGELRGPPLQLDTGQLLKIAKR-GGVTAVEVHHTWRNALTGAPLNLT 143
Query: 186 QTRLFCKILDNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAA 230
++ + + +GG L Q+ P+ C D G+ Q V A+
Sbjct: 144 PDQVVA--IASNIGGKQALETVQRLLPVLCQDHGLTPQQVVAIAS 186
>pdb|3M0Z|A Chain A, Crystal Structure Of Putative Aldolase From Klebsiella
Pneumoniae.
pdb|3M0Z|B Chain B, Crystal Structure Of Putative Aldolase From Klebsiella
Pneumoniae.
pdb|3M0Z|C Chain C, Crystal Structure Of Putative Aldolase From Klebsiella
Pneumoniae.
pdb|3M0Z|D Chain D, Crystal Structure Of Putative Aldolase From Klebsiella
Pneumoniae
Length = 249
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
Query: 39 YVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLCQE 98
+ G+A R LLG+N V++ +V + I+ + + A + L ++
Sbjct: 99 FTGVATSRALLGQNETVVNGLV--SPTGTPGXVKISTGPLSSGAADGIVPLETAIALLKD 156
Query: 99 AFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLK 156
S K GG H E EA ++AC D +++ P G +LE+ + +LK
Sbjct: 157 XGGSSIKYFPXGGLKHR-----AEFEAVAKACAAHD---FWLEPTGGIDLENYSEILK 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,923,973
Number of Sequences: 62578
Number of extensions: 370877
Number of successful extensions: 1036
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1019
Number of HSP's gapped (non-prelim): 18
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)