Query 041265
Match_columns 309
No_of_seqs 171 out of 1879
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:24:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1154 Dxs Deoxyxylulose-5-ph 100.0 7.1E-72 1.5E-76 545.0 24.5 295 1-309 89-454 (627)
2 PLN02234 1-deoxy-D-xylulose-5- 100.0 5.2E-70 1.1E-74 548.8 27.2 290 1-309 151-495 (641)
3 PLN02582 1-deoxy-D-xylulose-5- 100.0 1.7E-69 3.7E-74 549.1 27.1 299 1-309 118-494 (677)
4 PLN02225 1-deoxy-D-xylulose-5- 100.0 1.8E-68 3.9E-73 538.6 25.1 298 1-309 164-519 (701)
5 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 3.8E-68 8.3E-73 539.0 26.3 295 1-309 85-448 (617)
6 PRK12315 1-deoxy-D-xylulose-5- 100.0 2.1E-65 4.6E-70 516.1 25.2 283 2-309 88-415 (581)
7 PRK12571 1-deoxy-D-xylulose-5- 100.0 3.4E-64 7.3E-69 511.7 27.7 296 1-309 93-457 (641)
8 PRK05444 1-deoxy-D-xylulose-5- 100.0 5.8E-62 1.3E-66 492.1 25.7 279 1-309 91-417 (580)
9 PRK12753 transketolase; Review 100.0 5.6E-61 1.2E-65 489.4 24.9 275 1-309 87-499 (663)
10 PTZ00089 transketolase; Provis 100.0 1.2E-59 2.6E-64 480.1 25.5 275 1-309 89-500 (661)
11 PRK12754 transketolase; Review 100.0 1.3E-59 2.7E-64 477.5 24.3 274 1-309 87-499 (663)
12 KOG0523 Transketolase [Carbohy 100.0 1.5E-59 3.3E-64 456.1 18.1 275 1-309 92-459 (632)
13 TIGR00232 tktlase_bact transke 100.0 1.6E-58 3.4E-63 471.4 25.3 274 1-309 83-493 (653)
14 PLN02790 transketolase 100.0 3.5E-58 7.6E-63 468.9 25.8 274 1-309 78-490 (654)
15 PRK05899 transketolase; Review 100.0 2.8E-55 6E-60 447.0 24.7 273 1-309 91-464 (624)
16 COG0021 TktA Transketolase [Ca 100.0 2.2E-53 4.8E-58 417.4 23.1 274 1-308 89-498 (663)
17 TIGR03186 AKGDH_not_PDH alpha- 100.0 5.3E-53 1.2E-57 434.5 24.1 276 1-309 159-664 (889)
18 PRK09405 aceE pyruvate dehydro 100.0 4.1E-52 8.8E-57 428.1 24.2 277 1-309 165-669 (891)
19 PRK13012 2-oxoacid dehydrogena 100.0 4E-51 8.7E-56 422.1 24.3 277 1-309 173-677 (896)
20 TIGR00759 aceE pyruvate dehydr 100.0 4.1E-39 8.9E-44 328.7 20.7 276 1-309 159-663 (885)
21 COG3959 Transketolase, N-termi 100.0 1.3E-34 2.9E-39 253.1 11.6 143 1-176 92-243 (243)
22 COG3958 Transketolase, C-termi 100.0 8.5E-35 1.8E-39 263.4 10.7 125 184-308 7-146 (312)
23 PRK09404 sucA 2-oxoglutarate d 100.0 2.1E-33 4.5E-38 292.3 19.1 256 18-307 312-748 (924)
24 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 6.1E-33 1.3E-37 287.8 19.6 257 17-307 312-750 (929)
25 PF13292 DXP_synthase_N: 1-deo 100.0 2.5E-33 5.4E-38 252.6 11.4 160 1-173 85-270 (270)
26 PF00456 Transketolase_N: Tran 100.0 1.2E-32 2.7E-37 259.9 8.9 149 1-183 84-252 (332)
27 cd02007 TPP_DXS Thiamine pyrop 100.0 9.8E-32 2.1E-36 237.0 12.7 140 1-179 49-195 (195)
28 cd07033 TPP_PYR_DXS_TK_like Py 100.0 1.2E-31 2.6E-36 228.4 11.3 115 195-309 21-136 (156)
29 cd02017 TPP_E1_EcPDC_like Thia 100.0 2.9E-30 6.4E-35 245.3 14.1 151 1-183 88-327 (386)
30 PRK05261 putative phosphoketol 100.0 1.5E-29 3.3E-34 258.5 19.9 269 4-309 117-559 (785)
31 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 2E-29 4.4E-34 216.9 9.2 113 195-309 21-147 (167)
32 cd02012 TPP_TK Thiamine pyroph 100.0 8.7E-28 1.9E-32 220.1 13.4 150 1-183 78-236 (255)
33 PLN02683 pyruvate dehydrogenas 99.9 8.8E-28 1.9E-32 229.4 12.0 124 184-309 27-177 (356)
34 PRK09212 pyruvate dehydrogenas 99.9 8.2E-28 1.8E-32 227.6 10.7 123 185-309 5-154 (327)
35 CHL00144 odpB pyruvate dehydro 99.9 1.2E-27 2.6E-32 226.3 10.7 121 185-309 5-154 (327)
36 PRK11892 pyruvate dehydrogenas 99.9 2.4E-27 5.1E-32 232.9 12.0 124 184-309 142-292 (464)
37 PTZ00182 3-methyl-2-oxobutanat 99.9 6.9E-27 1.5E-31 223.2 10.8 111 196-309 60-185 (355)
38 PF02779 Transket_pyr: Transke 99.9 3E-27 6.4E-32 205.5 4.3 123 185-308 4-149 (178)
39 COG2609 AceE Pyruvate dehydrog 99.9 3E-25 6.5E-30 219.2 17.9 276 2-309 163-666 (887)
40 smart00861 Transket_pyr Transk 99.9 2.3E-25 4.9E-30 191.6 10.7 113 195-309 25-145 (168)
41 COG1071 AcoA Pyruvate/2-oxoglu 99.9 8.6E-25 1.9E-29 206.2 12.0 133 17-183 133-270 (358)
42 COG0022 AcoB Pyruvate/2-oxoglu 99.9 1.1E-24 2.3E-29 199.1 11.2 136 148-308 5-151 (324)
43 PF00676 E1_dh: Dehydrogenase 99.9 9.4E-24 2E-28 197.7 12.0 133 17-183 98-234 (300)
44 PLN02269 Pyruvate dehydrogenas 99.9 3.1E-23 6.7E-28 198.2 10.7 132 17-183 135-268 (362)
45 PLN02374 pyruvate dehydrogenas 99.9 6.4E-22 1.4E-26 192.8 11.4 133 17-183 191-334 (433)
46 CHL00149 odpA pyruvate dehydro 99.9 1.5E-21 3.3E-26 185.6 11.4 133 17-183 125-268 (341)
47 cd02016 TPP_E1_OGDC_like Thiam 99.9 1.5E-21 3.3E-26 178.5 9.5 133 17-183 110-255 (265)
48 KOG0225 Pyruvate dehydrogenase 99.9 2E-21 4.4E-26 178.4 9.6 133 17-183 162-296 (394)
49 cd02000 TPP_E1_PDC_ADC_BCADC T 99.8 6.4E-21 1.4E-25 178.1 12.4 131 17-181 101-235 (293)
50 TIGR03182 PDH_E1_alph_y pyruva 99.8 5E-21 1.1E-25 180.5 11.2 133 17-183 107-243 (315)
51 TIGR03181 PDH_E1_alph_x pyruva 99.8 3.3E-20 7.1E-25 176.7 11.3 132 17-182 119-254 (341)
52 cd02011 TPP_PK Thiamine pyroph 99.8 5.7E-19 1.2E-23 157.9 10.7 137 7-178 43-207 (227)
53 KOG1182 Branched chain alpha-k 99.8 1.4E-19 3E-24 165.2 5.7 127 18-176 191-320 (432)
54 KOG0524 Pyruvate dehydrogenase 99.7 3.5E-18 7.5E-23 153.4 7.8 115 190-307 58-183 (359)
55 KOG0525 Branched chain alpha-k 99.5 7.3E-15 1.6E-19 130.5 5.5 110 197-308 69-190 (362)
56 cd00568 TPP_enzymes Thiamine p 99.5 5.8E-14 1.3E-18 119.7 10.8 125 17-173 43-168 (168)
57 cd02004 TPP_BZL_OCoD_HPCL Thia 99.4 8.8E-13 1.9E-17 113.7 10.9 125 18-173 46-171 (172)
58 cd02008 TPP_IOR_alpha Thiamine 99.4 5.4E-13 1.2E-17 115.8 8.9 127 18-173 49-176 (178)
59 cd02002 TPP_BFDC Thiamine pyro 99.4 1.8E-12 3.9E-17 112.1 10.6 127 20-173 49-178 (178)
60 PRK12270 kgd alpha-ketoglutara 99.4 8.7E-12 1.9E-16 128.8 15.7 242 41-307 630-1051(1228)
61 cd02014 TPP_POX Thiamine pyrop 99.3 9.9E-12 2.2E-16 107.9 11.1 127 17-176 48-175 (178)
62 cd03371 TPP_PpyrDC Thiamine py 99.3 1E-11 2.2E-16 109.0 11.1 121 17-178 45-167 (188)
63 cd03372 TPP_ComE Thiamine pyro 99.3 4.7E-12 1E-16 110.2 8.3 120 17-179 39-160 (179)
64 cd02015 TPP_AHAS Thiamine pyro 99.3 1.3E-11 2.9E-16 107.7 10.2 129 18-177 48-177 (186)
65 cd02003 TPP_IolD Thiamine pyro 99.3 3.4E-11 7.5E-16 106.9 12.2 136 18-177 46-187 (205)
66 cd02013 TPP_Xsc_like Thiamine 99.3 7.1E-11 1.5E-15 104.2 12.1 129 18-178 51-183 (196)
67 PRK11864 2-ketoisovalerate fer 99.2 6.1E-11 1.3E-15 110.7 11.0 150 17-183 66-218 (300)
68 cd02001 TPP_ComE_PpyrDC Thiami 99.2 1.2E-10 2.6E-15 99.3 9.1 117 17-176 39-157 (157)
69 cd02005 TPP_PDC_IPDC Thiamine 99.2 1.4E-10 3.1E-15 101.2 9.4 125 17-177 47-177 (183)
70 PF02775 TPP_enzyme_C: Thiamin 99.2 1.3E-10 2.7E-15 98.3 8.4 128 17-171 25-153 (153)
71 TIGR03846 sulfopy_beta sulfopy 99.1 2.6E-10 5.7E-15 99.4 10.5 120 17-178 39-160 (181)
72 cd02010 TPP_ALS Thiamine pyrop 99.1 5.2E-10 1.1E-14 97.2 11.4 126 17-175 45-171 (177)
73 cd02009 TPP_SHCHC_synthase Thi 99.1 4.2E-10 9.2E-15 97.5 9.4 124 19-173 50-174 (175)
74 PRK07092 benzoylformate decarb 99.1 5.4E-10 1.2E-14 112.6 11.3 123 19-173 406-529 (530)
75 PRK08266 hypothetical protein; 99.1 9.2E-10 2E-14 111.1 11.8 128 19-178 401-529 (542)
76 COG3957 Phosphoketolase [Carbo 99.1 5.5E-09 1.2E-13 105.0 16.9 95 213-308 461-569 (793)
77 cd02006 TPP_Gcl Thiamine pyrop 99.1 1.4E-09 3E-14 96.3 11.4 137 18-177 55-197 (202)
78 PRK07524 hypothetical protein; 99.1 7.7E-10 1.7E-14 111.5 11.0 127 19-178 406-533 (535)
79 PRK08199 thiamine pyrophosphat 99.1 7.9E-10 1.7E-14 112.0 11.0 127 18-176 413-540 (557)
80 PRK06163 hypothetical protein; 99.1 2.3E-09 5E-14 95.1 12.5 137 17-194 54-196 (202)
81 TIGR03297 Ppyr-DeCO2ase phosph 99.1 7.4E-10 1.6E-14 106.4 10.0 127 11-178 211-340 (361)
82 PRK06546 pyruvate dehydrogenas 99.0 2.5E-09 5.5E-14 108.9 11.5 132 17-181 405-538 (578)
83 cd03376 TPP_PFOR_porB_like Thi 99.0 3.2E-09 6.9E-14 96.4 9.6 135 18-174 60-200 (235)
84 PRK06112 acetolactate synthase 98.9 3.4E-09 7.4E-14 107.9 10.5 126 19-176 436-562 (578)
85 cd06586 TPP_enzyme_PYR Pyrimid 98.9 3.3E-09 7.2E-14 88.9 8.6 96 210-306 32-128 (154)
86 cd03375 TPP_OGFOR Thiamine pyr 98.9 5E-09 1.1E-13 92.3 9.6 134 19-174 50-184 (193)
87 PRK08327 acetolactate synthase 98.9 5.7E-09 1.2E-13 106.1 9.6 136 18-174 428-567 (569)
88 PRK06725 acetolactate synthase 98.9 1.1E-08 2.3E-13 104.1 11.6 126 18-175 420-546 (570)
89 PRK08322 acetolactate synthase 98.9 1.3E-08 2.8E-13 102.8 11.3 129 17-178 403-532 (547)
90 PRK07710 acetolactate synthase 98.8 1.7E-08 3.6E-13 102.7 11.4 129 18-177 422-551 (571)
91 PRK08611 pyruvate oxidase; Pro 98.8 1.8E-08 3.8E-13 102.7 11.2 126 19-177 407-533 (576)
92 PRK08155 acetolactate synthase 98.8 2.2E-08 4.9E-13 101.6 11.6 128 18-176 417-545 (564)
93 PRK06457 pyruvate dehydrogenas 98.8 1.7E-08 3.6E-13 102.2 10.7 127 18-177 394-522 (549)
94 TIGR02720 pyruv_oxi_spxB pyruv 98.8 2.1E-08 4.6E-13 102.0 11.5 127 18-177 406-535 (575)
95 PRK09124 pyruvate dehydrogenas 98.8 1.7E-08 3.8E-13 102.6 10.7 128 18-178 406-534 (574)
96 PRK07064 hypothetical protein; 98.8 2.1E-08 4.5E-13 101.3 10.9 124 20-175 405-529 (544)
97 PRK12474 hypothetical protein; 98.8 2.4E-08 5.1E-13 100.5 11.1 128 19-173 388-518 (518)
98 TIGR02418 acolac_catab acetola 98.8 3.1E-08 6.8E-13 100.0 11.9 128 17-177 405-533 (539)
99 COG0028 IlvB Thiamine pyrophos 98.8 1.8E-08 3.9E-13 101.9 9.9 127 17-176 405-533 (550)
100 PRK08527 acetolactate synthase 98.8 2.6E-08 5.6E-13 101.1 10.9 129 18-177 412-541 (563)
101 PRK07418 acetolactate synthase 98.8 2.3E-08 5E-13 102.6 10.4 130 18-177 432-562 (616)
102 TIGR01504 glyox_carbo_lig glyo 98.8 3.2E-08 6.9E-13 101.0 11.1 135 19-177 417-558 (588)
103 PRK07586 hypothetical protein; 98.8 3.8E-08 8.2E-13 98.8 11.2 128 20-173 385-514 (514)
104 PRK06882 acetolactate synthase 98.8 4E-08 8.7E-13 99.9 11.1 130 18-177 419-549 (574)
105 PRK09107 acetolactate synthase 98.8 3.3E-08 7.2E-13 101.1 10.4 128 18-176 428-556 (595)
106 PRK08617 acetolactate synthase 98.8 4.7E-08 1E-12 99.0 11.3 127 18-177 412-539 (552)
107 CHL00099 ilvB acetohydroxyacid 98.8 4.3E-08 9.3E-13 100.0 11.0 129 17-175 427-556 (585)
108 PRK05858 hypothetical protein; 98.8 5.3E-08 1.1E-12 98.5 11.5 128 18-177 405-533 (542)
109 PRK08978 acetolactate synthase 98.8 5.2E-08 1.1E-12 98.6 11.3 128 19-177 400-528 (548)
110 TIGR00118 acolac_lg acetolacta 98.8 3.5E-08 7.5E-13 100.1 10.0 128 19-177 411-539 (558)
111 PLN02470 acetolactate synthase 98.7 5.5E-08 1.2E-12 99.2 11.3 133 18-177 424-560 (585)
112 PRK08273 thiamine pyrophosphat 98.7 6.1E-08 1.3E-12 99.1 11.3 130 19-177 414-549 (597)
113 PRK06154 hypothetical protein; 98.7 4.7E-08 1E-12 99.4 10.4 127 18-176 429-557 (565)
114 PRK06965 acetolactate synthase 98.7 5E-08 1.1E-12 99.6 10.6 130 18-177 435-565 (587)
115 PRK06048 acetolactate synthase 98.7 5.8E-08 1.3E-12 98.5 10.8 126 20-176 414-540 (561)
116 PRK07449 2-succinyl-5-enolpyru 98.7 3E-08 6.6E-13 100.6 8.5 126 19-175 424-550 (568)
117 PRK06456 acetolactate synthase 98.7 7E-08 1.5E-12 98.1 10.8 128 18-176 419-547 (572)
118 PRK05778 2-oxoglutarate ferred 98.7 8.8E-08 1.9E-12 89.9 10.2 132 20-174 70-203 (301)
119 PRK08979 acetolactate synthase 98.7 9.8E-08 2.1E-12 97.2 11.4 129 18-176 419-548 (572)
120 TIGR03457 sulphoacet_xsc sulfo 98.7 6.9E-08 1.5E-12 98.4 10.3 130 19-178 429-561 (579)
121 PRK11867 2-oxoglutarate ferred 98.7 9.5E-08 2.1E-12 89.1 10.1 134 20-178 69-206 (286)
122 TIGR03393 indolpyr_decarb indo 98.7 4.5E-08 9.9E-13 98.9 8.6 122 18-175 402-528 (539)
123 PRK06276 acetolactate synthase 98.7 8.1E-08 1.7E-12 98.0 10.1 126 19-175 418-544 (586)
124 PRK06466 acetolactate synthase 98.7 9.7E-08 2.1E-12 97.2 10.5 130 18-177 421-551 (574)
125 PRK11866 2-oxoacid ferredoxin 98.7 1.3E-07 2.7E-12 87.9 10.2 133 19-174 58-192 (279)
126 PRK11869 2-oxoacid ferredoxin 98.7 1.2E-07 2.6E-12 88.0 9.9 132 20-174 60-193 (280)
127 PRK11269 glyoxylate carboligas 98.7 1.1E-07 2.4E-12 97.2 10.2 137 18-176 417-558 (591)
128 PRK11865 pyruvate ferredoxin o 98.6 2.2E-07 4.9E-12 86.9 11.2 149 17-183 66-222 (299)
129 cd02018 TPP_PFOR Thiamine pyro 98.6 8.5E-08 1.8E-12 87.2 8.2 138 18-174 62-203 (237)
130 PRK07979 acetolactate synthase 98.6 1.6E-07 3.4E-12 95.7 10.9 129 19-176 420-550 (574)
131 PRK07789 acetolactate synthase 98.6 1.8E-07 3.8E-12 96.0 10.8 132 18-176 445-578 (612)
132 PLN02573 pyruvate decarboxylas 98.6 9.8E-08 2.1E-12 97.3 8.8 123 17-175 425-553 (578)
133 PRK07525 sulfoacetaldehyde ace 98.6 2E-07 4.3E-12 95.2 11.0 132 18-178 433-566 (588)
134 PRK07282 acetolactate synthase 98.6 1.4E-07 3E-12 96.0 9.3 127 18-176 416-543 (566)
135 PRK09628 oorB 2-oxoglutarate-a 98.6 2.3E-07 5E-12 86.1 9.4 136 20-177 68-204 (277)
136 PRK09259 putative oxalyl-CoA d 98.6 1.6E-07 3.5E-12 95.5 9.0 127 18-177 422-549 (569)
137 TIGR02177 PorB_KorB 2-oxoacid: 98.6 3.6E-07 7.8E-12 85.1 9.9 129 22-174 55-186 (287)
138 TIGR03254 oxalate_oxc oxalyl-C 98.5 5.1E-07 1.1E-11 91.5 11.0 124 19-176 416-540 (554)
139 TIGR03394 indol_phenyl_DC indo 98.5 3.8E-07 8.3E-12 92.2 9.9 122 18-176 401-523 (535)
140 TIGR03336 IOR_alpha indolepyru 98.4 1.6E-06 3.6E-11 88.7 9.8 128 18-173 401-529 (595)
141 PF09364 XFP_N: XFP N-terminal 98.3 2.6E-06 5.7E-11 80.7 8.5 137 8-181 122-288 (379)
142 PLN02980 2-oxoglutarate decarb 98.2 5E-06 1.1E-10 93.9 10.0 129 18-175 757-890 (1655)
143 COG3961 Pyruvate decarboxylase 97.9 4.3E-05 9.3E-10 75.4 8.6 125 19-177 410-538 (557)
144 COG3962 Acetolactate synthase 97.7 0.00013 2.9E-09 71.1 8.4 117 45-175 455-576 (617)
145 COG0567 SucA 2-oxoglutarate de 97.6 0.00053 1.1E-08 71.9 10.8 90 215-307 629-730 (906)
146 KOG0451 Predicted 2-oxoglutara 97.5 0.00046 1E-08 68.6 9.0 102 54-179 319-430 (913)
147 KOG1184 Thiamine pyrophosphate 97.5 0.00032 7E-09 69.2 7.6 124 19-176 414-541 (561)
148 KOG0450 2-oxoglutarate dehydro 97.4 0.00052 1.1E-08 69.7 8.5 111 50-182 399-515 (1017)
149 COG4231 Indolepyruvate ferredo 97.4 0.00069 1.5E-08 68.5 8.9 126 18-173 426-553 (640)
150 KOG1185 Thiamine pyrophosphate 97.3 0.0025 5.4E-08 62.7 11.0 117 41-176 437-562 (571)
151 COG1013 PorB Pyruvate:ferredox 96.9 0.0042 9.1E-08 58.3 8.7 131 21-174 71-204 (294)
152 KOG4166 Thiamine pyrophosphate 96.0 0.02 4.4E-07 55.7 7.3 127 18-176 522-649 (675)
153 PRK07119 2-ketoisovalerate fer 95.8 0.056 1.2E-06 52.0 9.2 95 211-308 47-146 (352)
154 PRK08659 2-oxoglutarate ferred 95.4 0.085 1.8E-06 51.3 9.1 93 213-308 49-146 (376)
155 PF01855 POR_N: Pyruvate flavo 95.4 0.019 4E-07 52.1 4.2 92 215-308 38-129 (230)
156 PRK08366 vorA 2-ketoisovalerat 94.6 0.13 2.9E-06 50.1 7.9 86 220-308 56-141 (390)
157 cd03377 TPP_PFOR_PNO Thiamine 94.2 0.2 4.4E-06 48.3 8.0 113 53-174 152-267 (365)
158 PRK09627 oorA 2-oxoglutarate-a 94.2 0.27 5.9E-06 47.8 9.0 91 214-308 49-145 (375)
159 PF03894 XFP: D-xylulose 5-pho 93.5 0.44 9.6E-06 41.2 8.1 95 213-307 59-167 (179)
160 TIGR03710 OAFO_sf 2-oxoacid:ac 93.2 0.25 5.4E-06 50.5 7.2 94 214-308 238-335 (562)
161 COG3960 Glyoxylate carboligase 92.6 0.3 6.5E-06 46.5 6.1 132 18-175 417-557 (592)
162 PRK09622 porA pyruvate flavodo 92.4 0.47 1E-05 46.6 7.6 91 214-308 58-148 (407)
163 PRK13030 2-oxoacid ferredoxin 91.8 0.59 1.3E-05 51.5 8.3 119 18-172 466-601 (1159)
164 cd07034 TPP_PYR_PFOR_IOR-alpha 91.5 0.92 2E-05 38.0 7.5 92 213-308 42-135 (160)
165 PRK09193 indolepyruvate ferred 90.8 0.89 1.9E-05 50.2 8.3 119 18-172 479-615 (1165)
166 COG1165 MenD 2-succinyl-6-hydr 90.5 0.88 1.9E-05 46.0 7.3 45 129-178 506-550 (566)
167 TIGR03336 IOR_alpha indolepyru 89.7 0.81 1.7E-05 47.1 6.6 89 215-308 48-138 (595)
168 PRK08367 porA pyruvate ferredo 89.3 1.4 3E-05 43.1 7.7 86 220-308 57-142 (394)
169 COG0674 PorA Pyruvate:ferredox 88.9 2 4.4E-05 41.6 8.4 92 214-308 49-140 (365)
170 TIGR03297 Ppyr-DeCO2ase phosph 88.8 1.1 2.3E-05 43.4 6.4 80 214-294 28-113 (361)
171 TIGR02176 pyruv_ox_red pyruvat 88.8 1.5 3.2E-05 48.8 8.1 113 53-174 952-1067(1165)
172 COG4032 Predicted thiamine-pyr 83.6 0.36 7.9E-06 40.3 0.1 91 215-305 43-138 (172)
173 cd07035 TPP_PYR_POX_like Pyrim 82.9 6 0.00013 32.8 7.3 83 214-298 36-120 (155)
174 PRK13029 2-oxoacid ferredoxin 82.5 6.1 0.00013 43.9 8.9 117 20-172 495-629 (1186)
175 KOG0523 Transketolase [Carbohy 80.8 1.5 3.3E-05 44.6 3.3 47 129-176 238-284 (632)
176 cd01460 vWA_midasin VWA_Midasi 80.3 18 0.00038 33.6 10.0 37 54-90 166-205 (266)
177 cd06586 TPP_enzyme_PYR Pyrimid 80.1 12 0.00025 30.7 8.1 102 41-171 49-152 (154)
178 COG4231 Indolepyruvate ferredo 74.9 5.5 0.00012 41.0 5.3 89 213-308 58-150 (640)
179 cd07033 TPP_PYR_DXS_TK_like Py 73.4 53 0.0011 27.4 10.4 78 66-171 74-154 (156)
180 PF02776 TPP_enzyme_N: Thiamin 72.8 18 0.00038 30.7 7.4 83 214-298 41-126 (172)
181 cd07036 TPP_PYR_E1-PDHc-beta_l 72.4 38 0.00083 28.9 9.3 30 136-170 135-164 (167)
182 TIGR03845 sulfopyru_alph sulfo 71.5 19 0.00042 30.4 7.3 58 219-276 40-97 (157)
183 TIGR02176 pyruv_ox_red pyruvat 69.0 21 0.00046 39.9 8.7 92 214-308 53-144 (1165)
184 KOG1145 Mitochondrial translat 67.0 1E+02 0.0023 31.7 12.2 103 53-178 227-342 (683)
185 cd07037 TPP_PYR_MenD Pyrimidin 65.7 32 0.0007 29.2 7.5 80 219-299 41-122 (162)
186 TIGR03845 sulfopyru_alph sulfo 63.6 70 0.0015 27.0 9.1 94 52-172 58-153 (157)
187 PF04273 DUF442: Putative phos 57.2 18 0.00039 28.8 4.1 43 131-174 52-96 (110)
188 cd07037 TPP_PYR_MenD Pyrimidin 53.8 1E+02 0.0022 26.2 8.5 23 148-171 138-160 (162)
189 cd07035 TPP_PYR_POX_like Pyrim 49.7 1.1E+02 0.0024 25.0 8.0 24 67-90 72-95 (155)
190 COG0299 PurN Folate-dependent 48.4 25 0.00054 31.2 3.9 34 185-218 66-107 (200)
191 cd07039 TPP_PYR_POX Pyrimidine 47.9 94 0.002 26.2 7.4 82 218-300 43-126 (164)
192 PRK12571 1-deoxy-D-xylulose-5- 44.7 2.3E+02 0.0049 29.7 10.9 81 63-172 394-477 (641)
193 TIGR00232 tktlase_bact transke 44.4 1.9E+02 0.0042 30.3 10.4 80 63-171 430-512 (653)
194 TIGR00204 dxs 1-deoxy-D-xylulo 44.2 2.1E+02 0.0045 29.8 10.5 89 54-172 377-468 (617)
195 PF02779 Transket_pyr: Transke 44.0 2E+02 0.0043 24.4 10.6 38 132-172 133-171 (178)
196 cd07034 TPP_PYR_PFOR_IOR-alpha 41.9 1.4E+02 0.0029 24.6 7.4 46 41-90 55-100 (160)
197 TIGR02418 acolac_catab acetola 41.8 79 0.0017 31.9 7.0 84 214-299 38-123 (539)
198 PRK07710 acetolactate synthase 41.0 1.4E+02 0.003 30.5 8.6 85 214-300 55-141 (571)
199 COG2159 Predicted metal-depend 40.1 1.9E+02 0.0042 26.9 8.8 98 205-302 90-197 (293)
200 PRK13030 2-oxoacid ferredoxin 39.2 35 0.00076 38.1 4.1 89 214-308 75-177 (1159)
201 COG1165 MenD 2-succinyl-6-hydr 38.9 1.1E+02 0.0024 31.3 7.3 116 184-302 8-136 (566)
202 PLN02683 pyruvate dehydrogenas 38.9 1.5E+02 0.0033 28.6 8.1 32 135-171 164-195 (356)
203 PRK13683 hypothetical protein; 38.7 50 0.0011 25.2 3.7 42 134-178 12-53 (87)
204 smart00115 CASc Caspase, inter 38.2 1.1E+02 0.0024 27.5 6.7 31 129-160 36-66 (241)
205 PRK12753 transketolase; Review 37.6 2.5E+02 0.0054 29.5 10.0 82 63-172 436-519 (663)
206 COG3958 Transketolase, C-termi 35.9 2.1E+02 0.0046 27.0 8.1 214 11-275 45-284 (312)
207 PRK11892 pyruvate dehydrogenas 35.2 1.5E+02 0.0033 29.7 7.6 31 136-171 280-310 (464)
208 PRK12315 1-deoxy-D-xylulose-5- 32.8 2.7E+02 0.0058 28.8 9.2 89 215-306 109-216 (581)
209 cd02008 TPP_IOR_alpha Thiamine 32.7 2.3E+02 0.0049 24.0 7.5 48 227-275 58-109 (178)
210 PRK06112 acetolactate synthase 32.3 1.5E+02 0.0032 30.3 7.3 83 214-298 51-135 (578)
211 PRK08199 thiamine pyrophosphat 32.0 1.6E+02 0.0035 29.9 7.5 79 219-299 52-133 (557)
212 PF10996 Beta-Casp: Beta-Casp 32.0 85 0.0018 24.7 4.4 36 52-87 79-114 (126)
213 TIGR00118 acolac_lg acetolacta 31.9 1.5E+02 0.0033 30.0 7.2 84 214-299 41-126 (558)
214 cd00032 CASc Caspase, interleu 31.2 1.5E+02 0.0032 26.7 6.3 49 129-180 38-87 (243)
215 cd07039 TPP_PYR_POX Pyrimidine 31.1 3.2E+02 0.0069 22.9 8.2 41 47-90 59-99 (164)
216 PRK07979 acetolactate synthase 30.6 1.6E+02 0.0034 30.1 7.1 79 219-298 48-128 (574)
217 PRK05444 1-deoxy-D-xylulose-5- 29.6 4.9E+02 0.011 26.7 10.5 89 53-171 345-436 (580)
218 PRK11269 glyoxylate carboligas 29.3 1.9E+02 0.0042 29.6 7.5 84 214-299 44-130 (591)
219 PRK06456 acetolactate synthase 29.2 1.7E+02 0.0036 29.8 7.0 79 219-300 49-131 (572)
220 COG0021 TktA Transketolase [Ca 29.2 2E+02 0.0043 30.2 7.3 149 55-245 433-584 (663)
221 PRK07525 sulfoacetaldehyde ace 28.9 1.9E+02 0.0041 29.7 7.3 79 219-298 49-129 (588)
222 cd02014 TPP_POX Thiamine pyrop 28.2 2.5E+02 0.0054 23.7 6.9 64 210-275 39-108 (178)
223 cd01452 VWA_26S_proteasome_sub 28.1 1.4E+02 0.003 26.2 5.3 27 53-79 108-135 (187)
224 PRK08322 acetolactate synthase 27.8 1.9E+02 0.0042 29.1 7.1 80 218-298 43-124 (547)
225 PRK07092 benzoylformate decarb 27.8 2.5E+02 0.0055 28.2 8.0 85 214-300 50-137 (530)
226 PRK06457 pyruvate dehydrogenas 27.7 1.8E+02 0.004 29.4 7.0 81 218-299 44-126 (549)
227 TIGR01244 conserved hypothetic 27.7 1.1E+02 0.0023 25.0 4.3 40 133-175 54-97 (135)
228 PLN02225 1-deoxy-D-xylulose-5- 27.5 3.8E+02 0.0083 28.5 9.3 95 41-171 441-538 (701)
229 PRK06466 acetolactate synthase 27.0 2.1E+02 0.0045 29.2 7.3 81 219-300 48-130 (574)
230 PRK08978 acetolactate synthase 26.9 2.3E+02 0.0051 28.6 7.6 87 214-302 40-128 (548)
231 PLN02582 1-deoxy-D-xylulose-5- 26.8 6.1E+02 0.013 26.9 10.6 85 55-170 425-512 (677)
232 PRK05899 transketolase; Review 26.6 6E+02 0.013 26.3 10.6 78 67-171 404-483 (624)
233 PTZ00182 3-methyl-2-oxobutanat 26.5 4.3E+02 0.0092 25.4 8.9 30 136-170 173-202 (355)
234 KOG1185 Thiamine pyrophosphate 26.5 3.3E+02 0.0071 27.8 8.0 26 143-170 199-224 (571)
235 PRK07449 2-succinyl-5-enolpyru 26.0 1.2E+02 0.0027 30.7 5.4 84 219-304 53-139 (568)
236 PTZ00089 transketolase; Provis 26.0 4.3E+02 0.0093 27.8 9.4 81 63-171 437-519 (661)
237 PRK07418 acetolactate synthase 25.8 3.9E+02 0.0084 27.6 9.0 83 214-298 62-146 (616)
238 PRK08617 acetolactate synthase 25.8 2E+02 0.0043 29.2 6.8 80 219-299 48-129 (552)
239 PRK07282 acetolactate synthase 25.7 2.1E+02 0.0046 29.2 7.0 79 220-299 55-135 (566)
240 COG3453 Uncharacterized protei 25.7 67 0.0015 26.3 2.7 38 131-173 53-96 (130)
241 PRK07064 hypothetical protein; 25.5 3.3E+02 0.0071 27.4 8.3 81 218-299 46-131 (544)
242 PLN02470 acetolactate synthase 25.2 2.6E+02 0.0056 28.7 7.6 83 214-298 53-137 (585)
243 PRK09212 pyruvate dehydrogenas 25.1 3.7E+02 0.0081 25.4 8.2 32 135-171 141-172 (327)
244 PRK05858 hypothetical protein; 24.9 3.2E+02 0.0068 27.7 8.1 80 219-299 48-129 (542)
245 COG1240 ChlD Mg-chelatase subu 24.9 5.6E+02 0.012 23.7 9.1 96 21-157 155-258 (261)
246 TIGR03457 sulphoacet_xsc sulfo 24.9 2.4E+02 0.0053 28.8 7.3 79 219-298 45-125 (579)
247 PRK08527 acetolactate synthase 24.7 2.5E+02 0.0053 28.6 7.3 79 219-298 47-127 (563)
248 PRK08611 pyruvate oxidase; Pro 24.1 2.6E+02 0.0057 28.6 7.3 84 214-299 45-130 (576)
249 COG1606 ATP-utilizing enzymes 24.0 3.2E+02 0.0069 25.4 7.0 105 17-153 24-128 (269)
250 PLN02790 transketolase 23.9 5.3E+02 0.012 27.0 9.6 77 68-171 431-509 (654)
251 PRK06276 acetolactate synthase 23.8 2.7E+02 0.0059 28.5 7.4 78 220-298 45-124 (586)
252 PRK06965 acetolactate synthase 23.6 4E+02 0.0086 27.3 8.6 80 220-300 66-147 (587)
253 PRK08155 acetolactate synthase 23.4 2.8E+02 0.006 28.2 7.3 83 214-298 53-137 (564)
254 PLN02234 1-deoxy-D-xylulose-5- 23.2 6.8E+02 0.015 26.3 10.1 80 68-177 436-518 (641)
255 PRK12754 transketolase; Review 23.1 7.9E+02 0.017 25.9 10.7 81 63-171 436-518 (663)
256 PRK08979 acetolactate synthase 23.0 2.8E+02 0.0062 28.2 7.4 83 214-298 44-128 (572)
257 PF08830 DUF1806: Protein of u 22.6 1.4E+02 0.003 24.0 3.9 27 147-177 4-30 (114)
258 KOG1615 Phosphoserine phosphat 22.3 71 0.0015 28.5 2.4 24 43-66 163-186 (227)
259 PRK09193 indolepyruvate ferred 22.2 71 0.0015 35.8 2.9 89 214-308 83-185 (1165)
260 PF01972 SDH_sah: Serine dehyd 22.1 83 0.0018 29.4 2.9 41 135-178 64-104 (285)
261 PRK07789 acetolactate synthase 22.0 3.6E+02 0.0078 27.8 7.9 83 214-298 71-155 (612)
262 TIGR02720 pyruv_oxi_spxB pyruv 21.9 2.8E+02 0.0061 28.3 7.1 79 219-298 44-124 (575)
263 PRK07524 hypothetical protein; 21.6 3.2E+02 0.0069 27.5 7.3 79 219-298 45-128 (535)
264 PRK06882 acetolactate synthase 21.4 3.1E+02 0.0067 27.9 7.3 82 214-297 44-127 (574)
265 cd02001 TPP_ComE_PpyrDC Thiami 21.3 2.5E+02 0.0054 23.4 5.5 62 211-275 34-99 (157)
266 COG0075 Serine-pyruvate aminot 21.2 3.8E+02 0.0082 26.3 7.4 38 52-93 55-92 (383)
267 COG3195 Uncharacterized protei 20.5 1E+02 0.0022 26.7 2.8 26 133-158 118-143 (176)
268 PRK02399 hypothetical protein; 20.1 3.5E+02 0.0077 26.7 6.9 42 255-296 325-369 (406)
269 COG0045 SucC Succinyl-CoA synt 20.1 8.4E+02 0.018 24.0 9.8 85 46-157 275-362 (387)
No 1
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=7.1e-72 Score=544.97 Aligned_cols=295 Identities=52% Similarity=0.789 Sum_probs=255.6
Q ss_pred CCCcccCCCC-------CCCCCCCCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHH
Q 041265 1 MRTIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAI 73 (309)
Q Consensus 1 ~~~~r~~~g~-------e~~~d~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAl 73 (309)
|.|+||++|| ||+||.|.+||+|++||+|+ |||.|+.+++++.+||+++|||+|+.|++||||
T Consensus 89 f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaal----------G~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EAL 158 (627)
T COG1154 89 FDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAAL----------GMAKARDLKGEDRNVVAVIGDGALTGGMAFEAL 158 (627)
T ss_pred cchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHh----------hHHHHHHhcCCCCcEEEEECCccccchHHHHHH
Confidence 6799999999 99999999999999999999 999999999999999999999999999999999
Q ss_pred HHHh-hccCcEEEEEeCcchhhhhhhhhcccch-------------------hhccCCcccc----hhhhHHhhhcCccc
Q 041265 74 NNAG-VLNKALKRLHSNPQFRQLCQEAFSSKDK-------------------KQKFGGQMHE----IDAFSREIEAGSRA 129 (309)
Q Consensus 74 n~A~-~~~~~Li~i~~nn~~~~~~~~~~~~~~~-------------------~~~~~~~~~~----~~~~~~~~~~~~~~ 129 (309)
|+|+ ..+.|+++|.++|+.+++.+.-..++-. .+..+.++.+ .++.+|+++.+ .
T Consensus 159 N~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~--~ 236 (627)
T COG1154 159 NNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVP--G 236 (627)
T ss_pred hhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCc--h
Confidence 9999 4446777665555565544331111100 0001111111 12222233333 3
Q ss_pred hhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh--------------------------
Q 041265 130 CFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK-------------------------- 183 (309)
Q Consensus 130 ~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e-------------------------- 183 (309)
.+||.+||+|+|++||||+++|..+|+.+|+. ++|++||+.|.|||||+++|
T Consensus 237 ~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd~--~gPvllHv~T~KGKGY~pAE~d~~~~H~v~~f~~~~tg~~~~~~~~ 314 (627)
T COG1154 237 TLFEELGFNYIGPIDGHNLEELIPTLKNAKDL--KGPVLLHVVTKKGKGYKPAEEDPIKYHGVGPFDPIETGQSKKSKPS 314 (627)
T ss_pred hhHHHhCCeeECCcCCCCHHHHHHHHHHHhcC--CCCEEEEEEecCCCCCChhhcChhhccCCCCCCccccCccCCCCCC
Confidence 69999999999999999999999999999998 99999999999999999998
Q ss_pred -hhHHHHHhhhc-------------ccccCCCCCchhhhhhCCCceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHH
Q 041265 184 -LQQTRLFCKIL-------------DNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQ 249 (309)
Q Consensus 184 -~~~~~~~~~~l-------------d~dl~~~~~~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ 249 (309)
++|+++|+++| +|.|...+|+..|.++||+||||+|||||+.|++|+|||..|+|||+.+|++|+|
T Consensus 315 ~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIYSTFLQ 394 (627)
T COG1154 315 APSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYSTFLQ 394 (627)
T ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHHhCchhheehhhhHHHHHHHHHHHHhCCCCCEEEEecHHHH
Confidence 46999999998 3889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 250 RCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 250 ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
|||||+.+|+|.+++||++...++|++|+||+|||+.+|+++|++||||+|++|+|..||
T Consensus 395 RAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el 454 (627)
T COG1154 395 RAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEEL 454 (627)
T ss_pred HHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999998875
No 2
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=5.2e-70 Score=548.81 Aligned_cols=290 Identities=58% Similarity=0.933 Sum_probs=251.1
Q ss_pred CCCcccCCCC-------CCCCCCCCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHH
Q 041265 1 MRTIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAI 73 (309)
Q Consensus 1 ~~~~r~~~g~-------e~~~d~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAl 73 (309)
|+|+||.||+ |+++|.|++||+|+|||+|+ |||+|+|+++++++|||++||||++||++||||
T Consensus 151 l~t~r~~ggl~G~p~~~es~~d~~~tGslg~glS~a~----------GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl 220 (641)
T PLN02234 151 MKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGL----------GMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAM 220 (641)
T ss_pred hcccccCCCcCCCCCCCCCCCcEECCCchHHHHHHHH----------HHHHHHHhCCCCCeEEEEEccchhhhHHHHHHH
Confidence 6899999999 66677799999999999999 999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcccc---hhhhHHhh------hcCccchhhhhcCCeEEecCC
Q 041265 74 NNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHE---IDAFSREI------EAGSRACFFEDLGLYYIGPVD 144 (309)
Q Consensus 74 n~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~~~~~f~a~G~~~~~~vD 144 (309)
|+|+.+++||++|.|+|+.+.+... |.++...+ ...+.++. ..+...++|++|||+|+|+||
T Consensus 221 ~~a~~~~~nlivIlddN~~~~~~~~---------q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vD 291 (641)
T PLN02234 221 NNAGYLHSNMIVILNDNKQVSLPTA---------NLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVD 291 (641)
T ss_pred HHHhhhCCCEEEEEECCCCCccccc---------ccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeEC
Confidence 9999888899888777765322110 11111111 11111111 112346899999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh--------------------------hhHHHHHhhhc----
Q 041265 145 GHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK--------------------------LQQTRLFCKIL---- 194 (309)
Q Consensus 145 G~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e--------------------------~~~~~~~~~~l---- 194 (309)
|||+++|.++|+++|+.+.++|++||++|.||+||+++| ++|+++|+++|
T Consensus 292 GHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~~~E~~~~~~H~~~~~~~~~g~~~~~~~~~~sy~~af~~aL~e~a 371 (641)
T PLN02234 292 GHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYAERADDKYHGVLKFDPETGKQFKNISKTQSYTSCFVEALIAEA 371 (641)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcchhhcCCcccCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999988652247999999999999999887 26899999988
Q ss_pred ---------ccccCCCCCchhhhhhCCCceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCC
Q 041265 195 ---------DNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLP 265 (309)
Q Consensus 195 ---------d~dl~~~~~~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~p 265 (309)
++|+++++++..|+++||+||||+||+||+|||+|+|||+.|+|||+++|++|++|++|||+++++++++|
T Consensus 372 ~~D~~Iv~l~adm~ggt~~~~f~~~fPdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~fs~Fl~RA~DQI~~dva~~~lp 451 (641)
T PLN02234 372 EADKDIVAIHAAMGGGTMLNLFESRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIYSSFMQRAYDQVVHDVDLQKLP 451 (641)
T ss_pred HHCcCEEEEECCCCCCcchHHHHHHccccccCCCcCHHHHHHHHHHHHHCCCeEEEEehHHHHHHHHHHHHHHHhhcCCC
Confidence 38999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 266 VRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 266 v~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
|+++++++|++|++|+|||+.+|+++||++|||+|++|+|+.|+
T Consensus 452 V~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~ 495 (641)
T PLN02234 452 VRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAEL 495 (641)
T ss_pred EEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHH
Confidence 99999999988889999999999999999999999999999874
No 3
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.7e-69 Score=549.09 Aligned_cols=299 Identities=61% Similarity=0.975 Sum_probs=253.1
Q ss_pred CCCcccCCCC-------CCCCCCCCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHH
Q 041265 1 MRTIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAI 73 (309)
Q Consensus 1 ~~~~r~~~g~-------e~~~d~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAl 73 (309)
|+++||.||+ |+++|.|++||+|++||+|+ |+|+|+|+++++++|||++|||+++||++||||
T Consensus 118 l~~~r~~g~l~g~p~~~e~~~~~~~~G~~g~~ls~a~----------G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Eal 187 (677)
T PLN02582 118 MHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGL----------GMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAM 187 (677)
T ss_pred hcccccCCCcCCCCCCCCCCCceeccchhhhhHHHHH----------HHHHHHHhcCCCCEEEEEecccccchhhHHHHH
Confidence 6799999996 77888899999999999999 999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCcchhhh--------hhhhh-cc-------------------cchhhccCCcc----cchhhhHH
Q 041265 74 NNAGVLNKALKRLHSNPQFRQL--------CQEAF-SS-------------------KDKKQKFGGQM----HEIDAFSR 121 (309)
Q Consensus 74 n~A~~~~~~Li~i~~nn~~~~~--------~~~~~-~~-------------------~~~~~~~~~~~----~~~~~~~~ 121 (309)
|+|+.+++||++|++||+..++ ++... .+ +.....+++.. .++++..+
T Consensus 188 n~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 267 (677)
T PLN02582 188 NNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYAR 267 (677)
T ss_pred HHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhh
Confidence 9999999999998888875322 11100 00 00000001000 00111112
Q ss_pred hhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh------------------
Q 041265 122 EIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK------------------ 183 (309)
Q Consensus 122 ~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e------------------ 183 (309)
..+.+...++||+|||+|+++|||||+++|.++|+++|+.+.++|++||++|.|||||+++|
T Consensus 268 ~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~~ae~~~~~~H~~~~f~~~~g~ 347 (677)
T PLN02582 268 GMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVTEKGRGYPYAERAADKYHGVVKFDPATGK 347 (677)
T ss_pred hccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhcCCCCCEEEEEEecCCCCCChhhcChhhcCCCCCCCcccCC
Confidence 22222112689999999999999999999999999999751158999999999999999988
Q ss_pred --------hhHHHHHhhhc-------------ccccCCCCCchhhhhhCCCceeeccchHHHHHHHHHHHhhCCCeeEEe
Q 041265 184 --------LQQTRLFCKIL-------------DNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCA 242 (309)
Q Consensus 184 --------~~~~~~~~~~l-------------d~dl~~~~~~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~ 242 (309)
++|+++|+++| ++||++++++..|+++||+||||+||+||+||++|+|||+.|++||++
T Consensus 348 ~~~~~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~fP~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~ 427 (677)
T PLN02582 348 QFKVKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCA 427 (677)
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHHcCccccccCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 25889999988 489999999999999999999999999999999999999999999999
Q ss_pred ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 243 IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 243 ~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
+|++|++|++|||++++|++++||+++++++|++|++|+|||+.+|+++||++|||+|++|+|+.|+
T Consensus 428 ~fs~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~ 494 (677)
T PLN02582 428 IYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAEL 494 (677)
T ss_pred ecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHH
Confidence 9999999999999999999999999999999998889999999999999999999999999999874
No 4
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.8e-68 Score=538.61 Aligned_cols=298 Identities=46% Similarity=0.753 Sum_probs=252.8
Q ss_pred CCCcccCCCC-------CCCCCCCCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHH
Q 041265 1 MRTIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAI 73 (309)
Q Consensus 1 ~~~~r~~~g~-------e~~~d~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAl 73 (309)
|++ ||+||+ ||+||.|++||+|++||+|+ |||.|+++++++++||++||||+|+.|++||||
T Consensus 164 f~~-Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaal----------G~a~ardl~g~~~~vvaVIGDGaltgGma~EaL 232 (701)
T PLN02225 164 IPS-RQKNGISGVTSQLESEYDSFGTGHGCNSISAGL----------GLAVARDIKGKRDRVVAVIDNATITAGQAYEAM 232 (701)
T ss_pred cCc-cccCCcCCCCCCCCCCCCCCCCChHHHHHHHHH----------HHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHH
Confidence 455 999999 99999999999999999999 999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCcchhhhhh--------hhhcc-------------------cchhhccCCccc----chhhhHHh
Q 041265 74 NNAGVLNKALKRLHSNPQFRQLCQ--------EAFSS-------------------KDKKQKFGGQMH----EIDAFSRE 122 (309)
Q Consensus 74 n~A~~~~~~Li~i~~nn~~~~~~~--------~~~~~-------------------~~~~~~~~~~~~----~~~~~~~~ 122 (309)
|+|+..+.||++|.++|++++..+ ....+ +....+++.... ++++..+.
T Consensus 233 N~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 312 (701)
T PLN02225 233 SNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARG 312 (701)
T ss_pred hhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 999999888877655556766555 10000 111112221111 12333334
Q ss_pred hhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchh-------hhhHHHHHhhhc-
Q 041265 123 IEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPL-------KLQQTRLFCKIL- 194 (309)
Q Consensus 123 ~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~-------e~~~~~~~~~~l- 194 (309)
++.+...++||++|++|+|++||||+++|.++|+++|+.+.++|++||++|.||+....- .++|+++|+++|
T Consensus 313 ~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~PvlvHv~T~KGkd~~tg~~~~~~~~~s~~~~f~~aL~ 392 (701)
T PLN02225 313 MVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVITEENRDAETGKNIMVKDRRTYSDCFVEALV 392 (701)
T ss_pred ccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCEEEEEEecCCCCCCCCCcCCCCCCcCHHHHHHHHHH
Confidence 443322379999999999999999999999999999987223899999999999853322 147999999998
Q ss_pred ------------ccccCCCCCchhhhhhCCCceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhC
Q 041265 195 ------------DNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQ 262 (309)
Q Consensus 195 ------------d~dl~~~~~~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~ 262 (309)
++||..++++..|+++||+||||+|||||+||++|+|||+.|++||+++|++|++||||||++++|++
T Consensus 393 ~la~~D~~Iv~Itadm~~gtgl~~f~~~fPdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iystFlqRAyDQI~~Dval~ 472 (701)
T PLN02225 393 MEAEKDRDIVVVHAGMEMDASLITFQERFPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIPSAFLQRAYDQVVHDVDRQ 472 (701)
T ss_pred HHHhhCCCEEEEeCCccCcccHHHHHHHccccccccCccHHHHHHHHHHHHHCCCEEEEEeehhHHHHHHHHHHHHHHhh
Confidence 48998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 263 KLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 263 ~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
++||++++.++|++|+||+|||+.+|+++||++|||+|++|+|+.|+
T Consensus 473 ~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El 519 (701)
T PLN02225 473 RKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDEL 519 (701)
T ss_pred cCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHH
Confidence 99999999999998899999999999999999999999999999875
No 5
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=3.8e-68 Score=538.96 Aligned_cols=295 Identities=46% Similarity=0.727 Sum_probs=253.8
Q ss_pred CCCcccCCCC-------CCCCCCCCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHH
Q 041265 1 MRTIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAI 73 (309)
Q Consensus 1 ~~~~r~~~g~-------e~~~d~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAl 73 (309)
|+||||+||+ |+.+|.+++||+|+|||+|+ |+|+|.|+++++.++||++|||+++||++||||
T Consensus 85 l~~~r~~g~l~g~p~~~e~~~d~~~~G~~g~~ls~a~----------G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~ 154 (617)
T TIGR00204 85 FSTLRQKKGLHGFPKRSESEYDVFSAGHSSTSISAGL----------GIAVAAEKKGADRKTVCVIGDGAITAGMAFEAL 154 (617)
T ss_pred hcchhhcCCcCCCCcCCCCCCCccCCCchHhHHHHHH----------HHHHHHHhhCCCCEEEEEECCcccccccHHHHH
Confidence 5799999999 56678789999999999999 999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCcchhhhhhhhhccc-------------------chhhccCC----cccchhhhHHhhhcCccch
Q 041265 74 NNAGVLNKALKRLHSNPQFRQLCQEAFSSK-------------------DKKQKFGG----QMHEIDAFSREIEAGSRAC 130 (309)
Q Consensus 74 n~A~~~~~~Li~i~~nn~~~~~~~~~~~~~-------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 130 (309)
|+|+.+++|+++|++||+|+...+....++ +++...+. ...+.++.++.++.+ .+
T Consensus 155 ~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~--~~ 232 (617)
T TIGR00204 155 NHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP--GT 232 (617)
T ss_pred HHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc--cc
Confidence 999999988888888898876654420000 00000000 000111222233333 36
Q ss_pred hhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh--------------------------h
Q 041265 131 FFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK--------------------------L 184 (309)
Q Consensus 131 ~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e--------------------------~ 184 (309)
+|++|||+|+++|||||+++|.++|+++|+. ++|++||++|+||+||+++| +
T Consensus 233 ~f~~~G~~~~~~vDGhd~~~l~~al~~ak~~--~~P~~i~~~T~KGkG~~~~e~~~~~~H~~~~~~~~~~~~~~~~~~~~ 310 (617)
T TIGR00204 233 FFEELGFNYIGPVDGHDLLELIETLKNAKKL--KGPVFLHIQTKKGKGYKPAEKDPIGWHGVGPFDLSTGCLPKSKSALP 310 (617)
T ss_pred hHHHcCCcEEcccCCCCHHHHHHHHHHHhcC--CCCEEEEEEecCCCCCchhhcChhhccCCCCCChhhCCcCCCCCCCc
Confidence 7999999999899999999999999999986 78999999999999999876 1
Q ss_pred hHHHHHhhhc-------------ccccCCCCCchhhhhhCCCceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhH
Q 041265 185 QQTRLFCKIL-------------DNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRC 251 (309)
Q Consensus 185 ~~~~~~~~~l-------------d~dl~~~~~~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra 251 (309)
+|+++|+++| |+|+.+++++++|+++||+||||+||+||+||++|+|||+.|++||+++|++|++|+
T Consensus 311 ~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~fP~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~a~Fl~ra 390 (617)
T TIGR00204 311 SYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKFPDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYSTFLQRA 390 (617)
T ss_pred cHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHCccccccCCccHHHHHHHHHHHHHCCCEEEEEecHHHHHHH
Confidence 5788999888 588887888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 252 FDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 252 ~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
+|||++++|++++||+++++++|++|.+|+|||+.+|+++|+++|||+|++|+|+.|+
T Consensus 391 ~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~ 448 (617)
T TIGR00204 391 YDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENEL 448 (617)
T ss_pred HHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHH
Confidence 9999999999999999999999998889999999999999999999999999999774
No 6
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.1e-65 Score=516.12 Aligned_cols=283 Identities=31% Similarity=0.487 Sum_probs=246.9
Q ss_pred CCcccCCCC-------CCCCCCCCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHH
Q 041265 2 RTIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAIN 74 (309)
Q Consensus 2 ~~~r~~~g~-------e~~~d~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln 74 (309)
.++|++|++ ||+||.+.+||+|++||+|+ |+|+|.|+++++++|||++|||+++||++|||||
T Consensus 88 ~~~~~~g~~~G~~~~~~s~~~~~~~g~~~~~ls~A~----------G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln 157 (581)
T PRK12315 88 LDPDHYDDVTGYTNPEESEHDFFTVGHTSTSIALAT----------GLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLN 157 (581)
T ss_pred hhHHHcCCCCCCCCCCCCCCCCcCCCcHHHHHHHHH----------HHHHHHHhcCCCCeEEEEECchhhhcchHHHHHH
Confidence 356677766 77899999999999999999 9999999999999999999999999999999999
Q ss_pred HHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHH
Q 041265 75 NAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYV 154 (309)
Q Consensus 75 ~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~a 154 (309)
+|+.|++||++|++||+|++.++... ....+...... -..+...+|++|||++++++||||++++.++
T Consensus 158 ~A~~~k~~li~Ii~dN~~si~~~~~~--------~~~~l~~~~~~----~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a 225 (581)
T PRK12315 158 NAAELKSNLIIIVNDNQMSIAENHGG--------LYKNLKELRDT----NGQSENNLFKAMGLDYRYVEDGNDIESLIEA 225 (581)
T ss_pred HHHhhCCCEEEEEECCCCcCCCCCch--------hhhhhhhhhhc----ccccHHHHHHhcCCeEEEeeCCCCHHHHHHH
Confidence 99999999999999999876543320 00000000000 0012246799999999965699999999999
Q ss_pred HHHhhcCCCCCcEEEEEEeeeccCCchhh-------------------------hhHHHHHhhhc-------------cc
Q 041265 155 LKQVKAIPDPGAVLIHVITEKEKAMLPLK-------------------------LQQTRLFCKIL-------------DN 196 (309)
Q Consensus 155 l~~a~~~~~~~P~~I~~~T~kg~G~~~~e-------------------------~~~~~~~~~~l-------------d~ 196 (309)
++++|+. ++|++||++|+||+||++++ .+|+++|+++| ++
T Consensus 226 ~~~a~~~--~gP~~i~~~T~kG~G~~~~~~~~~~~h~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~i~~ 303 (581)
T PRK12315 226 FKEVKDI--DHPIVLHIHTLKGKGYQPAEENKEAFHWHMPFDLETGQSKVPASGESYSSVTLDYLLKKIKEGKPVVAINA 303 (581)
T ss_pred HHHHHhC--CCCEEEEEEeecCCCCChhhcCHHhcCCCCCCCcccCcccCCCCCcCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 9999986 88999999999999998643 25788998887 48
Q ss_pred ccCCCCCchhhhhhCCCceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCcc
Q 041265 197 RMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLV 276 (309)
Q Consensus 197 dl~~~~~~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~ 276 (309)
|+++++++.+|.++||+||||+||+||+|+++|+|||+.|++||+.+|++|++||+|||++++|++++||+++++++|+.
T Consensus 304 ~~~~~~~~~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~fs~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~ 383 (581)
T PRK12315 304 AIPGVFGLKEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVIFVNSTFLQRAYDQLSHDLAINNNPAVMIVFGGSIS 383 (581)
T ss_pred ccccccCcHHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEEEEeeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 277 GADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 277 g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
+ ||+|||+.+|+++||++|||+|++|+|++|+
T Consensus 384 ~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~ 415 (581)
T PRK12315 384 G-NDVTHLGIFDIPMISNIPNLVYLAPTTKEEL 415 (581)
T ss_pred C-CCccccccHHHHHHhcCCCCEEEecCCHHHH
Confidence 7 9999999999999999999999999999874
No 7
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=3.4e-64 Score=511.74 Aligned_cols=296 Identities=49% Similarity=0.765 Sum_probs=252.6
Q ss_pred CCCcccCCCC-------CCCCCCCCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHH
Q 041265 1 MRTIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAI 73 (309)
Q Consensus 1 ~~~~r~~~g~-------e~~~d~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAl 73 (309)
|++|||.||+ |+++|++.+||.+++|++|+ |+|+|.++.+.+++|||++|||+++||++|||+
T Consensus 93 l~~~r~~~~l~g~p~~~e~~~~~~~~g~~~gslg~a~----------G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal 162 (641)
T PRK12571 93 FRTLRQKGGLSGFTKRSESEYDPFGAAHSSTSISAAL----------GFAKARALGQPDGDVVAVIGDGSLTAGMAYEAL 162 (641)
T ss_pred HhhhhhCCCcCCCCCCCcCCCCCcccCCCcChHHHHH----------HHHHHHHHhCCCCeEEEEEeCchhhcchHHHHH
Confidence 5799999999 55567788999999999999 999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCcchhhhhhhhhccc---c----------------hhhccCCccc----chhhhHHhhhcCccch
Q 041265 74 NNAGVLNKALKRLHSNPQFRQLCQEAFSSK---D----------------KKQKFGGQMH----EIDAFSREIEAGSRAC 130 (309)
Q Consensus 74 n~A~~~~~~Li~i~~nn~~~~~~~~~~~~~---~----------------~~~~~~~~~~----~~~~~~~~~~~~~~~~ 130 (309)
++|+.+++||++|.+||+|+...+....++ + ....++..+. ++++..+.++.+ .+
T Consensus 163 ~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 240 (641)
T PRK12571 163 NNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGG--GT 240 (641)
T ss_pred HHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccch--hh
Confidence 999999999999999999876554420000 0 0000110100 011111222221 47
Q ss_pred hhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh--------------------------h
Q 041265 131 FFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK--------------------------L 184 (309)
Q Consensus 131 ~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e--------------------------~ 184 (309)
+|++|||+|+++|||||+++|.++|+++|+.. ++|++||++|+||+||+++| +
T Consensus 241 ~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~~-~~P~~I~~~T~kGkG~~~~e~~~~~~Hg~~~f~~~~~~~~~~~~~~~ 319 (641)
T PRK12571 241 LFEELGFTYVGPIDGHDMEALLSVLRAARARA-DGPVLVHVVTEKGRGYAPAEADEDKYHAVGKFDVVTGLQKKSAPSAP 319 (641)
T ss_pred HHHHcCCEEECccCCCCHHHHHHHHHHHHhCC-CCCEEEEEEecCccCcchhhcCCCcccCCCCcCCCCCcccCCCccch
Confidence 99999999998899999999999999998732 78999999999999998766 3
Q ss_pred hHHHHHhhhc-------------ccccCCCCCchhhhhhCCCceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhH
Q 041265 185 QQTRLFCKIL-------------DNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRC 251 (309)
Q Consensus 185 ~~~~~~~~~l-------------d~dl~~~~~~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra 251 (309)
+|+++|+++| ++|+.+++++.+|+++||+||||+||+|++|+++|+|||+.|++||+++|++|++|+
T Consensus 320 ~~~~~f~~~L~~la~~d~~iv~isadl~~~~~~~~f~~~~p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~~f~~Fl~ra 399 (641)
T PRK12571 320 SYTSVFGEELTKEAAEDSDIVAITAAMPLGTGLDKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAVYSTFLQRG 399 (641)
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEeCCccCCCChHHHHHhCCCcccccCccHHHHHHHHHHHHHCCCEEEEEehHHHHHHH
Confidence 6888999887 489988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 252 FDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 252 ~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
+|||++++|++++||+++++++|++|++|+|||+.+|+++||+|||++|++|+|+.|+
T Consensus 400 ~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~ 457 (641)
T PRK12571 400 YDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAEL 457 (641)
T ss_pred HHHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHH
Confidence 9999999999999999999999988899999999999999999999999999999874
No 8
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=5.8e-62 Score=492.13 Aligned_cols=279 Identities=52% Similarity=0.814 Sum_probs=244.9
Q ss_pred CCCcccCCCCCCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhc-CCCCeEEEEEeCCccccchHHHH
Q 041265 1 MRTIRQTCGLENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLL-GKNNHVISVIVEGATIARMSYEA 72 (309)
Q Consensus 1 ~~~~r~~~g~e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~-~~~~~v~~~~GDG~l~eG~~~EA 72 (309)
|++|||.||+++||+. +++||+|+|||+|+ |+|+|.|++ +.+++|||++|||+++||++|||
T Consensus 91 l~~~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~Av----------G~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Ea 160 (580)
T PRK05444 91 FDTLRQKGGLSGFPKRSESEYDTFGAGHSSTSISAAL----------GMAKARDLKGGEDRKVVAVIGDGALTGGMAFEA 160 (580)
T ss_pred hcCcccCCCCCCCCCCCCCCCeeECCChHHHHHHHHH----------HHHHHHHhhCCCCCeEEEEEcccccccCHHHHH
Confidence 5799999999555443 99999999999999 999999998 57889999999999999999999
Q ss_pred HHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHH
Q 041265 73 INNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLA 152 (309)
Q Consensus 73 ln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~ 152 (309)
|+.|+.+++||++|.|||+|+...+.. ....... ..+...+|++|||+++.++||||++++.
T Consensus 161 l~~A~~~~~nli~IvdnN~~~i~~~~~---------------~~~~~~~---~~~~~~~~~a~G~~~~~~vdG~d~~~l~ 222 (580)
T PRK05444 161 LNNAGDLKSDLIVILNDNEMSISPNVG---------------ALSNYLA---RLRSSTLFEELGFNYIGPIDGHDLDALI 222 (580)
T ss_pred HHHHHhhCCCEEEEEECCCCcCCCcch---------------hhhhhhc---cccHHHHHHHcCCCeeeeeCCCCHHHHH
Confidence 999999999999999999885322211 0000000 0122457899999999668999999999
Q ss_pred HHHHHhhcCCCCCcEEEEEEeeeccCCchhh---------------------------hhHHHHHhhhc-----------
Q 041265 153 YVLKQVKAIPDPGAVLIHVITEKEKAMLPLK---------------------------LQQTRLFCKIL----------- 194 (309)
Q Consensus 153 ~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e---------------------------~~~~~~~~~~l----------- 194 (309)
++++++++. ++|++|+++|+||+||+++| .+|+++|+++|
T Consensus 223 ~al~~a~~~--~~P~lI~~~T~kg~G~~~~e~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~vv 300 (580)
T PRK05444 223 ETLKNAKDL--KGPVLLHVVTKKGKGYAPAEADPIKYHGVGKFDPETGEQPKSSKPGKPSYTKVFGETLCELAEKDPKIV 300 (580)
T ss_pred HHHHHHHhC--CCCEEEEEEecCCcCCChhhcCccccCCCCCCCcccCCccccCCCCcccHHHHHHHHHHHHHhhCCCEE
Confidence 999999876 78999999999999998664 14788898887
Q ss_pred --ccccCCCCCchhhhhhCCCceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeC
Q 041265 195 --DNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDR 272 (309)
Q Consensus 195 --d~dl~~~~~~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~ 272 (309)
|+|+.++.++..|+++||+||||+||+||+|+|+|+|||+.|++||+++|++|++|++|||+++++++++||++++++
T Consensus 301 ~~~adl~~~~~~~~f~~~~p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~ 380 (580)
T PRK05444 301 AITAAMPEGTGLVKFSKRFPDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIYSTFLQRAYDQVIHDVALQNLPVTFAIDR 380 (580)
T ss_pred EEECCcCCCCCHHHHHHHhhhhccCCChHHHHHHHHHHHHHHCCCeeEEEeeHHHHHHHHHHHHHHhhhcCCCEEEEEeC
Confidence 588887778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 273 AGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 273 ~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
+|+.+++|+|||+.+|+++||++||++|++|+|+.|+
T Consensus 381 ~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~ 417 (580)
T PRK05444 381 AGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENEL 417 (580)
T ss_pred CCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHH
Confidence 9998889999999999999999999999999999874
No 9
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=5.6e-61 Score=489.45 Aligned_cols=275 Identities=16% Similarity=0.179 Sum_probs=235.5
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhcCC----------CCeEEEEEeCC
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGK----------NNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~----------~~~v~~~~GDG 62 (309)
|++|||+||+ ++||+. ++|||+|+|||+|+ |+|+|.|+++. +++|||++|||
T Consensus 87 L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~Av----------G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG 156 (663)
T PRK12753 87 LKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAV----------GLAIAERTLAAQFNRPGHEIVDHYTYVFMGDG 156 (663)
T ss_pred HHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHH----------HHHHHHHHhhhhcCCccccccCCEEEEEECcC
Confidence 4689999998 777664 79999999999999 99999998763 68899999999
Q ss_pred ccccchHHHHHHHHhhccC-cEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLNK-ALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~~-~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
+++||++|||+|+|+.+++ ||++|+|||+++...+.. . .+.++...+|++|||++++
T Consensus 157 el~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~---------------~-------~~~~~~~~~f~a~Gw~~~~ 214 (663)
T PRK12753 157 CLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETE---------------G-------WFTDDTAKRFEAYHWHVIH 214 (663)
T ss_pred ccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChh---------------h-------hcChhHHHHHHHcCCeEEc
Confidence 9999999999999999995 799999999875543332 0 0112336689999999995
Q ss_pred cCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh--------------------------------------
Q 041265 142 PVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK-------------------------------------- 183 (309)
Q Consensus 142 ~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e-------------------------------------- 183 (309)
+|||||+++|+++++++++.+ ++|++|+++|+||+|++++|
T Consensus 215 ~vDGhD~~~i~~a~~~a~~~~-~~P~~I~~~T~kG~G~~~~e~~~~~H~~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~ 293 (663)
T PRK12753 215 EIDGHDPQAIKEAILEAQSVK-DKPSLIICRTIIGFGSPNKAGKEESHGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAA 293 (663)
T ss_pred eeCCCCHHHHHHHHHHHHHCC-CCeEEEEEEEeecCCCCcccCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 599999999999999988632 78999999999999987543
Q ss_pred -----------h------------------------------hHHH--------------------HHhhhc--------
Q 041265 184 -----------L------------------------------QQTR--------------------LFCKIL-------- 194 (309)
Q Consensus 184 -----------~------------------------------~~~~--------------------~~~~~l-------- 194 (309)
. +|.+ +++++|
T Consensus 294 ~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~~~g~~L~~l~~~~p 373 (663)
T PRK12753 294 WDAREKGEKAEQAWNEKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINELQANPAKIATRKASQNTLEAYGPLLP 373 (663)
T ss_pred HHhhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhCC
Confidence 0 0111 122222
Q ss_pred -----ccccCCCCCc-----hhhhhhCCCceeeccchHHHHHHHHHHHhh-CCCeeEEeecHHHHHhHHHHHHHhhhhCC
Q 041265 195 -----DNRMGGGTGL-----NLFQKHFPIRCFDVGIAEQHAVTFAAGLAA-EGLKPFCAIYSSFLQRCFDQVAHDVDLQK 263 (309)
Q Consensus 195 -----d~dl~~~~~~-----~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~-~G~~pi~~~~~~F~~ra~dqi~~~~a~~~ 263 (309)
++|+.+++.+ ..|.++||+||||+||+||+|+++|+|||+ .|++||+.+|+.|++|++||||+. |+++
T Consensus 374 ~lv~~sADl~~S~~~~~~~~~~f~~~~p~r~i~~GIaEq~mv~~aaGlA~~~G~~P~~~tf~~F~~r~~~qir~~-a~~~ 452 (663)
T PRK12753 374 ELLGGSADLAPSNLTIWSGSKSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMA-ALMK 452 (663)
T ss_pred CeEEEccccccccCcccccccchhhcCCCCEEEeeecHHHHHHHHHHHHHhCCCeEEEEehHHHHHHHHHHHHHH-HhcC
Confidence 5899888876 678899999999999999999999999999 899999999999999999999987 9999
Q ss_pred CCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 264 LPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 264 ~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
+||+++++++|+ .|+||+|||++||+++||.||||+|++|+|+.|+
T Consensus 453 l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~ 499 (663)
T PRK12753 453 ARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEA 499 (663)
T ss_pred CCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHH
Confidence 999999999999 7999999999999999999999999999998874
No 10
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=1.2e-59 Score=480.15 Aligned_cols=275 Identities=21% Similarity=0.262 Sum_probs=230.6
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhcCC----------CCeEEEEEeCC
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGK----------NNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~----------~~~v~~~~GDG 62 (309)
|+++|+.+|. ++||+. ++|||+|+|||.|+ |+|+|.|+++. +++|||++|||
T Consensus 89 l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~Av----------G~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG 158 (661)
T PTZ00089 89 LKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAV----------GLAIAEKHLAAKFNRPGHPIFDNYVYVICGDG 158 (661)
T ss_pred HHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHH----------HHHHHHHHHhhhccCccccCcCCEEEEEECcc
Confidence 4689999987 555553 89999999999999 99999999764 78899999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
+++||++|||+|+|+.++ +||++|+|||+|+...+.. .. ..++...+|++|||+|++
T Consensus 159 ~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~---------------~~-------~~~~~~~~f~a~G~~~i~ 216 (661)
T PTZ00089 159 CLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTD---------------LS-------FTEDVEKKYEAYGWHVIE 216 (661)
T ss_pred chhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCcc---------------cc-------cCccHHHHHHhcCCcEEE
Confidence 999999999999999999 5799999999876543332 00 012235689999999994
Q ss_pred cCCCC-CHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh-------------------------------------
Q 041265 142 PVDGH-NLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK------------------------------------- 183 (309)
Q Consensus 142 ~vDG~-D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e------------------------------------- 183 (309)
.+||| |+++|+++++++++.. ++|++||++|+||+|+....
T Consensus 217 v~dG~~D~~~l~~a~~~a~~~~-~~P~~I~~~T~kG~G~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~ 295 (661)
T PTZ00089 217 VDNGNTDFDGLRKAIEEAKKSK-GKPKLIIVKTTIGYGSSKAGTEKVHGAPLGDEDIAQVKELFGLDPEKKFHVSEEVRQ 295 (661)
T ss_pred eCCCCCCHHHHHHHHHHHHhcC-CCcEEEEEEeeecCCCCcCCCCCccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHH
Confidence 44999 9999999999998642 68999999999999942110
Q ss_pred -------------hhHHHHH----------------------------------------------hhhc----------
Q 041265 184 -------------LQQTRLF----------------------------------------------CKIL---------- 194 (309)
Q Consensus 184 -------------~~~~~~~----------------------------------------------~~~l---------- 194 (309)
.+|.+.| ++.|
T Consensus 296 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~R~~~g~~L~~la~~~~~~ 375 (661)
T PTZ00089 296 FFEQHVEKKKENYEAWKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKKLPKYTTNDKAIATRKASENVLNPLFQILPEL 375 (661)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHCHHHHHHHHHHhccCCchhhhhhhhhhcccCcchHHHHHHHHHHHHHHhhCCCe
Confidence 0122111 1111
Q ss_pred ---ccccCCCCCch-----hhhhhCC-CceeeccchHHHHHHHHHHHhh-CCCeeEEeecHHHHHhHHHHHHHhhhhCCC
Q 041265 195 ---DNRMGGGTGLN-----LFQKHFP-IRCFDVGIAEQHAVTFAAGLAA-EGLKPFCAIYSSFLQRCFDQVAHDVDLQKL 264 (309)
Q Consensus 195 ---d~dl~~~~~~~-----~~~~~~p-~r~~~~gIaE~~~vg~a~GlA~-~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~ 264 (309)
++|+..++.+. .|+++|| +||||+||+||+|+++|+|||+ .|++||+.+|++|++|++||||+. |++++
T Consensus 376 ~~~saDl~~s~~~~~~~~~~f~~~~P~~rfi~~GIaEq~mv~~AaGlA~~~G~~P~~~tf~~Fl~Ra~dqir~~-al~~l 454 (661)
T PTZ00089 376 IGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMCAIMNGIAAHGGFIPFGATFLNFYGYALGAVRLA-ALSHH 454 (661)
T ss_pred EEEECCCCcccCcCCcccccccccCCCCCeeeeeecHHHHHHHHHHHHHcCCCeEEEEehHHHHHHHHHHHHHH-HhcCC
Confidence 47887777653 7888899 8999999999999999999999 899999999999999999999887 99999
Q ss_pred CeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 265 PVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 265 pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
||+++++++|+ .|+||+|||++||+++||+||||+|++|+|+.|+
T Consensus 455 pV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~ 500 (661)
T PTZ00089 455 PVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTET 500 (661)
T ss_pred CeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHH
Confidence 99999999988 7999999999999999999999999999999885
No 11
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=1.3e-59 Score=477.54 Aligned_cols=274 Identities=17% Similarity=0.216 Sum_probs=235.1
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhcC----------CCCeEEEEEeCC
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLG----------KNNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~----------~~~~v~~~~GDG 62 (309)
|++|||+||. ++||+. ++||++|+|+|.|+ |+|+|.|+++ .+++|||++|||
T Consensus 87 L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~Av----------G~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDG 156 (663)
T PRK12754 87 LKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAV----------GMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDG 156 (663)
T ss_pred HHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHH----------HHHHHHHHhhhccCcccccccCCEEEEEECcc
Confidence 4689999998 666654 89999999999999 9999999986 378899999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
+++||++|||+++|+.++ ++|++|+|||+|+...+.. .. ..++...+|++|||+++
T Consensus 157 el~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~---------------~~-------~~~~~~~r~~a~Gw~vi- 213 (663)
T PRK12754 157 CMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVE---------------GW-------FTDDTAMRFEAYGWHVI- 213 (663)
T ss_pred hhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchh---------------hc-------cCccHHHHHHhcCCeEE-
Confidence 999999999999999999 4689999999876543332 00 01233668999999999
Q ss_pred c-CCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh-------------------------------------
Q 041265 142 P-VDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK------------------------------------- 183 (309)
Q Consensus 142 ~-vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e------------------------------------- 183 (309)
+ |||||+++|.+|++++++. .++|++|+++|+||+|.+..|
T Consensus 214 ~vvDG~D~~ai~~A~~~a~~~-~~~Pt~I~~~T~~g~G~~~~e~~~~~Hg~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~ 292 (663)
T PRK12754 214 RGIDGHDADSIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYA 292 (663)
T ss_pred eeECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeeeccCccccCCCccccCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHH
Confidence 6 8999999999999998853 278999999999999977543
Q ss_pred ------------hh-------H-------------------------------------------HHHHhhhc-------
Q 041265 184 ------------LQ-------Q-------------------------------------------TRLFCKIL------- 194 (309)
Q Consensus 184 ------------~~-------~-------------------------------------------~~~~~~~l------- 194 (309)
.. | +++|+++|
T Consensus 293 ~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~~~~~~L~~la~~~ 372 (663)
T PRK12754 293 QWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLL 372 (663)
T ss_pred HHHHhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCchhHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhhC
Confidence 00 0 01223333
Q ss_pred ------ccccCCCCC-----chhhhhhCCCceeeccchHHHHHHHHHHHhh-CCCeeEEeecHHHHHhHHHHHHHhhhhC
Q 041265 195 ------DNRMGGGTG-----LNLFQKHFPIRCFDVGIAEQHAVTFAAGLAA-EGLKPFCAIYSSFLQRCFDQVAHDVDLQ 262 (309)
Q Consensus 195 ------d~dl~~~~~-----~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~-~G~~pi~~~~~~F~~ra~dqi~~~~a~~ 262 (309)
|+|+.++++ ...|.++||+|+||+||+||+|+++|+|||+ .|++||+.+|+.|++|+++|||++ |++
T Consensus 373 ~~lv~~sADl~~s~~~~~~~~~~f~~~~p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~tf~~F~~r~~~qir~~-a~~ 451 (663)
T PRK12754 373 PEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGIALHGGFLPYTSTFLMFVEYARNAVRMA-ALM 451 (663)
T ss_pred CCEEEEeCCcccccCccccccccccccCCCCeEeeccchhhHHHHHhhHHhcCCCeEEEEeeHHHHHHHHHHHHHH-HHc
Confidence 589988876 4678889999999999999999999999999 789999999999999999999998 999
Q ss_pred CCCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 263 KLPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 263 ~~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
++||+++++|+|+ .|+||+|||++||+++||+||||+|+.|+|+.|+
T Consensus 452 ~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~ 499 (663)
T PRK12754 452 KQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVES 499 (663)
T ss_pred CCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHH
Confidence 9999999999999 7999999999999999999999999999998874
No 12
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-59 Score=456.09 Aligned_cols=275 Identities=27% Similarity=0.408 Sum_probs=239.5
Q ss_pred CCCcccCCCC-CC------CCCCCCcCCchhhHhhHhhcccccccchhhHhHhHhcCC-CCeEEEEEeCCccccchHHHH
Q 041265 1 MRTIRQTCGL-EN------VHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGK-NNHVISVIVEGATIARMSYEA 72 (309)
Q Consensus 1 ~~~~r~~~g~-e~------~~d~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~-~~~v~~~~GDG~l~eG~~~EA 72 (309)
|.+|||+||. +. +++-++|||+|||||.|+ |||++.|+.++ +++|||++|||+++||++|||
T Consensus 92 l~~~Rq~~s~t~ghp~~~~~~v~v~TG~lgQgis~a~----------GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA 161 (632)
T KOG0523|consen 92 LKNFRQIGSDTPGHPEPELPGVEVATGPLGQGISNAV----------GMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEA 161 (632)
T ss_pred HHHHHhhCCCCCCCCcccCCCceeccCCccchHHHHH----------HHHHHHHhhccccceEEEEEcCchhccchHHHH
Confidence 4689999999 44 444599999999999999 99999999998 999999999999999999999
Q ss_pred HHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHH
Q 041265 73 INNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDL 151 (309)
Q Consensus 73 ln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l 151 (309)
|++|++++ +||++|.|||..+...+.. .+.. ++.. ..+|++|||++. .|||+|+++|
T Consensus 162 ~s~Ag~l~ldnLVai~D~n~is~~g~t~-------~~~~------~dV~--------~~r~ea~g~~~~-~V~~~d~d~i 219 (632)
T KOG0523|consen 162 MSLAGHLKLDNLVAIYDNNKISIDGATS-------LGFD------EDVY--------QLRFEAFGWNVI-IVDGGDVDEI 219 (632)
T ss_pred HhhhhhcccCCEEEEEccccccCCCCCc-------cccc------ccHH--------HHHHHHhCceEE-EEcCcCHHHH
Confidence 99999999 8999999999654332222 0011 1111 236899999999 9999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeeeccCCchhh------------------------------------------------
Q 041265 152 AYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK------------------------------------------------ 183 (309)
Q Consensus 152 ~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e------------------------------------------------ 183 (309)
.+++.+++..+ ++|++|.++|.+|+|....+
T Consensus 220 ~ka~~~a~~~k-~kpt~i~~~t~~g~G~~~ig~~~~Hg~pl~~~~~~~~k~~~~~P~~~~~v~~~~~~~p~~~~~~~~~~ 298 (632)
T KOG0523|consen 220 RKAIGKAKSVK-GKPTAIKATTFIGRGSPYIGSESVHGAPLGEDDVERVKSIKGLPVLIFVVPEKVKLYPEKPVEDARAI 298 (632)
T ss_pred HHHHhhhhhcc-CCceeeeeeeeeecCccccccccccCCcchhhHHHHHHhhcCCcceeEEeccccccCCCccccccccc
Confidence 99999988543 77999999999999855433
Q ss_pred ---------------------hhHHHHHhhhc-------------ccccCCCCCchhhhhhCCCceeeccchHHHHHHHH
Q 041265 184 ---------------------LQQTRLFCKIL-------------DNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFA 229 (309)
Q Consensus 184 ---------------------~~~~~~~~~~l-------------d~dl~~~~~~~~~~~~~p~r~~~~gIaE~~~vg~a 229 (309)
..++.+|+++| |+|+..++.++-|+++||+|||++||+||+|+++|
T Consensus 299 ~~~i~~~~~~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~td~~~~~~p~R~i~~giaEq~mv~ia 378 (632)
T KOG0523|consen 299 SVRIPKIWEKSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLTDFFPKRFPERFIECGIAEQNMVGIA 378 (632)
T ss_pred ccCcCccccccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchhhhccccCccceEEEeeehhhhHHhh
Confidence 13566777777 59999999888889999999999999999999999
Q ss_pred HHHhhCCC-eeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCC
Q 041265 230 AGLAAEGL-KPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLV 307 (309)
Q Consensus 230 ~GlA~~G~-~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~ 307 (309)
+|+|..|. +|++.+|+.|++||+||+|++ +..+.+++++++|+++ .|+||||||++||+++||++||+.|+.|+|..
T Consensus 379 ~G~a~~g~~~Pf~~tf~~F~trA~dqvr~~-a~s~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~PaD~~ 457 (632)
T KOG0523|consen 379 NGIACRGRTIPFCGTFAAFFTRAFDQVRMG-ALSQANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRPADGN 457 (632)
T ss_pred hchhcCCCccchhHHHHHHHHHhhhheeeh-hhccCCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEEecCchH
Confidence 99999997 999999999999999999999 6888999999999988 79999999999999999999999999999998
Q ss_pred CC
Q 041265 308 LL 309 (309)
Q Consensus 308 e~ 309 (309)
|+
T Consensus 458 et 459 (632)
T KOG0523|consen 458 ET 459 (632)
T ss_pred HH
Confidence 74
No 13
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=1.6e-58 Score=471.39 Aligned_cols=274 Identities=20% Similarity=0.241 Sum_probs=235.4
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhcC----------CCCeEEEEEeCC
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLG----------KNNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~----------~~~~v~~~~GDG 62 (309)
|++|||.|+. ++||+. ++||++|+|+|+|+ |+|+|.|+++ .+++|||++|||
T Consensus 83 L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~Av----------G~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG 152 (653)
T TIGR00232 83 LKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAV----------GMAIAQKTLAATFNKPGFEIVDHYTYVFVGDG 152 (653)
T ss_pred HHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHH----------HHHHHHHHHhhhccCCccCCcCCEEEEEEccc
Confidence 4689999997 788775 89999999999999 9999999874 377899999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
+++||.+|||+++|+.++ +||++|+|||+|+...+.. .. ..++...+|++|||+++
T Consensus 153 ~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~---------------~~-------~~~~~~~~~~a~Gw~~~- 209 (653)
T TIGR00232 153 CLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVD---------------GS-------FTEDVAKRFEAYGWEVL- 209 (653)
T ss_pred cccccHHHHHHHHHHHhCCCcEEEEEeCCCeeeccccc---------------cc-------cCccHHHHHHhcCCcEE-
Confidence 999999999999999999 5699999999886544332 00 01223568999999999
Q ss_pred cC-CCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh------------------------------------h
Q 041265 142 PV-DGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK------------------------------------L 184 (309)
Q Consensus 142 ~v-DG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e------------------------------------~ 184 (309)
.| ||||+++|.+|++++++.+ ++|++|+++|+||+|++..| .
T Consensus 210 ~v~DG~D~~ai~~A~~~a~~~~-~~P~~I~~~T~~g~G~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~f~v~~~~~~ 288 (653)
T TIGR00232 210 EVEDGHDLAAIDAAIEEAKASK-DKPTLIEVTTTIGFGSPNKAGTHGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYD 288 (653)
T ss_pred EeCCCCCHHHHHHHHHHHHhCC-CCCEEEEEEeeecccCcccCCCCcccCCCCCHHHHHHHHHHhCCCCCCccCCHHHHH
Confidence 78 9999999999999998752 48999999999999987544 0
Q ss_pred hH-------------------------------------------------------------HHHHhhhc---------
Q 041265 185 QQ-------------------------------------------------------------TRLFCKIL--------- 194 (309)
Q Consensus 185 ~~-------------------------------------------------------------~~~~~~~l--------- 194 (309)
.| +++|++.|
T Consensus 289 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~atR~~~g~~L~~la~~~p~ 368 (653)
T TIGR00232 289 HFQKTVKERGAKAEQEWNELFAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFKAKLQALATRKYSQNVLNAIANVLPE 368 (653)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhccCchhhhhhhhhhhccCcchHHHHHHHHHHHHHHhhCCC
Confidence 00 01133333
Q ss_pred ----ccccCCCCCchh-----hhhhCCCceeeccchHHHHHHHHHHHhh-CCCeeEEeecHHHHHhHHHHHHHhhhhCCC
Q 041265 195 ----DNRMGGGTGLNL-----FQKHFPIRCFDVGIAEQHAVTFAAGLAA-EGLKPFCAIYSSFLQRCFDQVAHDVDLQKL 264 (309)
Q Consensus 195 ----d~dl~~~~~~~~-----~~~~~p~r~~~~gIaE~~~vg~a~GlA~-~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~ 264 (309)
|+|+.+++++.. |+++||+||||+||+||+|+++|+|||+ .|++||+.+|+.|++|+++|||+. +++++
T Consensus 369 iv~lsaDl~~s~~~~~~~~~~f~~~~p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~~~tf~~F~~r~~~~ir~~-a~~~l 447 (653)
T TIGR00232 369 LLGGSADLAPSNLTKWKGSGDLHENPLGNYIHYGVREFAMGAIMNGIALHGGFKPYGGTFLMFVDYARPAIRLA-ALMKL 447 (653)
T ss_pred EEEEeCCccccCCcccccccchhhcCCCCeEeecccHHHHHHHHHHHHHcCCCeEEEEEhHHHHHHHHHHHHHH-HhcCC
Confidence 589988887754 8899999999999999999999999999 789999999999999999999998 99999
Q ss_pred CeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 265 PVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 265 pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
||+++++|+|+ .|++|+|||++||+++||++|||+|++|+|+.|+
T Consensus 448 pV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E~ 493 (653)
T TIGR00232 448 PVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNET 493 (653)
T ss_pred CEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHHH
Confidence 99999999988 7999999999999999999999999999999874
No 14
>PLN02790 transketolase
Probab=100.00 E-value=3.5e-58 Score=468.90 Aligned_cols=274 Identities=20% Similarity=0.259 Sum_probs=230.3
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhc-----CC-----CCeEEEEEeCC
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLL-----GK-----NNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~-----~~-----~~~v~~~~GDG 62 (309)
|++|||.||+ ++||+. +++||+|+|||+|+ |+|+|.|++ +. +++|||++|||
T Consensus 78 l~~~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~----------G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG 147 (654)
T PLN02790 78 LKQFRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAV----------GLALAEKHLAARFNKPDHKIVDHYTYCILGDG 147 (654)
T ss_pred HHHhccCCCCCCCCCCCCCCCCccccCCchhchHHHHH----------HHHHHHHHHHHHhCCCcccccCCEEEEEECcC
Confidence 5689999998 666553 99999999999999 999999963 32 68899999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
+++||++|||+|+|+.++ +||++|+|||+|++..+.. . ...+ +...+|++|||+++
T Consensus 148 ~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~---~----------~~~~---------~~~~~f~a~G~~~~- 204 (654)
T PLN02790 148 CQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTE---I----------AFTE---------DVDKRYEALGWHTI- 204 (654)
T ss_pred cccchHHHHHHHHHHHhCCCCEEEEEecCCccccCCcc---c----------ccch---------hHHHHHHHcCCeEE-
Confidence 999999999999999999 5799999999886544332 0 0011 22567999999999
Q ss_pred cCCC--CCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh------------------------------------
Q 041265 142 PVDG--HNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK------------------------------------ 183 (309)
Q Consensus 142 ~vDG--~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e------------------------------------ 183 (309)
.||| ||+++|.++++++++. .++|++||++|+||+|+++.|
T Consensus 205 ~vdgg~hd~~~l~~a~~~a~~~-~~~P~lI~~~T~kG~G~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~F~~~~~~~ 283 (654)
T PLN02790 205 WVKNGNTDYDEIRAAIKEAKAV-TDKPTLIKVTTTIGYGSPNKANSYSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVK 283 (654)
T ss_pred EECCCCCCHHHHHHHHHHHHhc-CCCeEEEEEEEeecCCCccccCCCCcCCCCCCHHHHHHHHHHhCCCCCCCcCCHHHH
Confidence 6666 8999999999999872 278999999999999987543
Q ss_pred h--------------hHHHHH----------------------------------------------hhhc---------
Q 041265 184 L--------------QQTRLF----------------------------------------------CKIL--------- 194 (309)
Q Consensus 184 ~--------------~~~~~~----------------------------------------------~~~l--------- 194 (309)
. +|.+.| ++.|
T Consensus 284 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~R~~~~~~l~~i~~~~p~ 363 (654)
T PLN02790 284 SHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAELKSLISGELPSGWEKALPTFTPEDPADATRNLSQKCLNALAKVLPG 363 (654)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhccCCchhhhhhhhhhcccCcchHHHHHHHHHHHHHHhhCCC
Confidence 0 111111 1122
Q ss_pred ----ccccCCCCC-----chhhhhh-CCCceeeccchHHHHHHHHHHHhhC--CCeeEEeecHHHHHhHHHHHHHhhhhC
Q 041265 195 ----DNRMGGGTG-----LNLFQKH-FPIRCFDVGIAEQHAVTFAAGLAAE--GLKPFCAIYSSFLQRCFDQVAHDVDLQ 262 (309)
Q Consensus 195 ----d~dl~~~~~-----~~~~~~~-~p~r~~~~gIaE~~~vg~a~GlA~~--G~~pi~~~~~~F~~ra~dqi~~~~a~~ 262 (309)
++|+.++++ +..|+++ ||+||||+||+||+|+++|+|||+. |++||+.+|+.|+.|+.+|||+. |++
T Consensus 364 iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~tf~~F~~~~~~~ir~~-al~ 442 (654)
T PLN02790 364 LIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYCATFFVFTDYMRAAMRLS-ALS 442 (654)
T ss_pred eEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEEEEecHHHHHHHHHHHHHH-Hhc
Confidence 488877765 5689888 5999999999999999999999995 69999999999999999999998 999
Q ss_pred CCCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 263 KLPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 263 ~~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
++||+++++|+|+ .|+||+|||++||+++||+|||++|++|+|+.|+
T Consensus 443 ~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~ 490 (654)
T PLN02790 443 EAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADGNET 490 (654)
T ss_pred CCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHH
Confidence 9999999999888 7999999999999999999999999999999874
No 15
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=2.8e-55 Score=447.00 Aligned_cols=273 Identities=22% Similarity=0.284 Sum_probs=236.3
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhcCC----------CCeEEEEEeCC
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGK----------NNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~----------~~~v~~~~GDG 62 (309)
|.++|++++. +++++. +++|++|+|||+|+ |+|+|.+++++ +++|||++|||
T Consensus 91 l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~Ai----------G~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG 160 (624)
T PRK05899 91 LKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAV----------GMALAEKYLAALFNRPGLDIVDHYTYVLCGDG 160 (624)
T ss_pred HHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHH----------HHHHHHHHhhhhcCCccccCcCCeEEEEECcc
Confidence 4579999997 544442 79999999999999 99999998877 78999999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
++++|.+||||+.|+.++ ++|++|.+||+|+...+.. .. ..++...+|++|||+++
T Consensus 161 ~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~---------------~~-------~~~~~~~~~~a~G~~~~- 217 (624)
T PRK05899 161 DLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTE---------------GW-------FTEDVKKRFEAYGWHVI- 217 (624)
T ss_pred hhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccc---------------cc-------ccccHHHHhccCCCeEE-
Confidence 999999999999999999 4688999999886543221 00 01233567999999999
Q ss_pred cCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh-------------------h------------------
Q 041265 142 PVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK-------------------L------------------ 184 (309)
Q Consensus 142 ~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e-------------------~------------------ 184 (309)
.|||||++++.++++++++. ++|++|+++|+||+|++.+| .
T Consensus 218 ~VdG~d~~~l~~al~~a~~~--~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 295 (624)
T PRK05899 218 EVDGHDVEAIDAAIEEAKAS--TKPTLIIAKTIIGKGAPNKEGTHKVHGAPLGAEEIAAAKKELGWDYEPFEVPEEVYAH 295 (624)
T ss_pred EECCCCHHHHHHHHHHHHhc--CCCEEEEEEeEeccCCccccCCCcccCCCCCHHHHHHHHHHcCCCcccccCChHHHHH
Confidence 79999999999999999876 78999999999999987554 0
Q ss_pred -------------hH-----------HHHHhhhc-------------ccccCCCCCchhhh------hhCCCceeeccch
Q 041265 185 -------------QQ-----------TRLFCKIL-------------DNRMGGGTGLNLFQ------KHFPIRCFDVGIA 221 (309)
Q Consensus 185 -------------~~-----------~~~~~~~l-------------d~dl~~~~~~~~~~------~~~p~r~~~~gIa 221 (309)
.| +++|+++| ++|+++++++..+. ++||+||||+||+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~~~~~~~~f~~~~~p~R~~d~GIa 375 (624)
T PRK05899 296 WRKAKERGAKAEAEWNEKFAGEKVATRKASGKALNALAKALPELVGGSADLAGSNNTKIKGSKDFAPEDYSGRYIHYGVR 375 (624)
T ss_pred HHHhhhcCchhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCcccccccccCccCCCCCeeeeChh
Confidence 11 56777766 48988887776665 6789999999999
Q ss_pred HHHHHHHHHHHhhCC-CeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcE
Q 041265 222 EQHAVTFAAGLAAEG-LKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMV 299 (309)
Q Consensus 222 E~~~vg~a~GlA~~G-~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~ 299 (309)
||+|+|+|+|||+.| ++||+++|++|++|+++||++. +++++||+++++++|+ .|.+|+|||+++|+++||++||++
T Consensus 376 E~~~vg~A~GlA~~G~~~pv~~t~~~F~~r~~~qir~~-~~~~~pv~~v~~~~G~~~g~~G~tHq~~edia~~r~iP~~~ 454 (624)
T PRK05899 376 EFAMAAIANGLALHGGFIPFGGTFLVFSDYARNAIRLA-ALMKLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLT 454 (624)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcHHHHHHHHHHHHHH-HhcCCCEEEEEECCCcCcCCCCCCcccHHHHHHHHhCCCcE
Confidence 999999999999999 9999999999999999999997 8999999999999998 678999999999999999999999
Q ss_pred EEEeCCCCCC
Q 041265 300 VMKDIKLVLL 309 (309)
Q Consensus 300 v~~Ps~~~e~ 309 (309)
|++|+|+.|+
T Consensus 455 V~~P~d~~e~ 464 (624)
T PRK05899 455 VIRPADANET 464 (624)
T ss_pred EEeCCCHHHH
Confidence 9999999874
No 16
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-53 Score=417.35 Aligned_cols=274 Identities=22% Similarity=0.284 Sum_probs=233.5
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhcCC----------CCeEEEEEeCC
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGK----------NNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~----------~~~v~~~~GDG 62 (309)
|.+|||+++. ++||.. .+||++||||+.|+ |||+|.|+... +++|||++|||
T Consensus 89 Lk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAV----------GmAlAe~~La~~fn~~g~~ivdh~tYvl~GDG 158 (663)
T COG0021 89 LKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAV----------GMALAEKHLAALFNRPGFDIVDHYTYVLVGDG 158 (663)
T ss_pred HHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHH----------HHHHHHHHHHhhhCCCCCccccceEEEEecCc
Confidence 4689999999 777773 89999999999999 99999988764 35899999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
+|+||++|||..+|++++ ++||++.|+|+++ +++.+..+ ++++...+|+++||+|+.
T Consensus 159 clmEGvs~EA~slAG~l~L~kLIvlyD~N~Is---------------iDG~~~~~-------f~ed~~~RfeAyGW~vi~ 216 (663)
T COG0021 159 CLMEGVSHEAASLAGHLKLGKLIVLYDSNDIS---------------IDGDTSLS-------FTEDVAKRFEAYGWNVIR 216 (663)
T ss_pred hHhcccHHHHHHHHhhcCCCcEEEEEeCCCce---------------eccCcccc-------cchhHHHHHHhcCCeEEE
Confidence 999999999999999999 7999998888642 33333221 233446789999999998
Q ss_pred cCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh--------------------------------------
Q 041265 142 PVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK-------------------------------------- 183 (309)
Q Consensus 142 ~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e-------------------------------------- 183 (309)
.+||||+++|.+|++++|+.+ ++|++|+|+|+.|+|-+..+
T Consensus 217 ~~DG~D~e~I~~Ai~~Ak~~~-dkPtlI~~kTiIG~Gsp~kegt~~~HGapLg~~ev~~~k~~lgw~~~~F~vp~ev~~~ 295 (663)
T COG0021 217 VIDGHDLEAIDKAIEEAKAST-DKPTLIIVKTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEPFEVPEEVYAA 295 (663)
T ss_pred ecCCCCHHHHHHHHHHHHhcC-CCCeEEEEEeeeecCCCCcCCCccccCCCCCHHHHHHHHHHhCCCCCceecCHHHHHH
Confidence 899999999999999999853 79999999999999977744
Q ss_pred ------------hhH----------------------------------------------HHHHhhhc-----------
Q 041265 184 ------------LQQ----------------------------------------------TRLFCKIL----------- 194 (309)
Q Consensus 184 ------------~~~----------------------------------------------~~~~~~~l----------- 194 (309)
..| +.+.+++|
T Consensus 296 ~~~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~ATR~as~~~L~~l~~~~p~l~ 375 (663)
T COG0021 296 FRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPKFEANGKSIATRKASGKALNALAKKLPELI 375 (663)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhcccCchhHHHhhhhhcccccccchHHHHHHHHHHHHhhCcccc
Confidence 001 11122222
Q ss_pred --ccccCCCCCch-----hhh-hhCCCceeeccchHHHHHHHHHHHhhC-CCeeEEeecHHHHHhHHHHHHHhhhhCCCC
Q 041265 195 --DNRMGGGTGLN-----LFQ-KHFPIRCFDVGIAEQHAVTFAAGLAAE-GLKPFCAIYSSFLQRCFDQVAHDVDLQKLP 265 (309)
Q Consensus 195 --d~dl~~~~~~~-----~~~-~~~p~r~~~~gIaE~~~vg~a~GlA~~-G~~pi~~~~~~F~~ra~dqi~~~~a~~~~p 265 (309)
+||+.+|+.+. .|. +.|++|+|+.||+|.+|.++++|||+. |++|+..+|..|+.++..+||.. |+|++|
T Consensus 376 GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhGg~~pyggTFlvFsdY~r~AiRla-ALm~l~ 454 (663)
T COG0021 376 GGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHGGFIPYGGTFLVFSDYARPAVRLA-ALMGLP 454 (663)
T ss_pred ccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhcCceeecceehhhHhhhhHHHHHH-HhcCCC
Confidence 58999988762 343 567899999999999999999999996 47999999999999999999998 799999
Q ss_pred eEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCC
Q 041265 266 VRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVL 308 (309)
Q Consensus 266 v~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e 308 (309)
++++.+|.++ +|+||||||++|+++.||++||+.|+.|+|+.|
T Consensus 455 ~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~E 498 (663)
T COG0021 455 VIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANE 498 (663)
T ss_pred eEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChHH
Confidence 9999999999 899999999999999999999999999999987
No 17
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=5.3e-53 Score=434.51 Aligned_cols=276 Identities=18% Similarity=0.134 Sum_probs=229.0
Q ss_pred CCCcccC--C-CCCC--CCCC------CCcCCchhhHhhHhhcccccccchhhHhHhHhcC-------CCCeEEEEEeCC
Q 041265 1 MRTIRQT--C-GLEN--VHDA------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLG-------KNNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~--~-g~e~--~~d~------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~-------~~~~v~~~~GDG 62 (309)
|++|||. + |+++ ||+. ++||++|+|+++|+ |+|++.|+.+ .+++|||++|||
T Consensus 159 L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~Av----------G~Ala~kyl~~r~~~~~~~~rVy~llGDG 228 (889)
T TIGR03186 159 LAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAI----------YQARFMRYLQNRGLARTEGRKVWGFFGDG 228 (889)
T ss_pred HHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHH----------HHHHHHHHHhhccccCCCCceEEEEEcch
Confidence 4689997 4 5544 3322 89999999999999 9999988543 368899999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
|++||++|||+.+|+.++ +||++|+|+|.. +.++++..+-.+ .++...+|++|||+++
T Consensus 229 El~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~---------------qlDG~t~~~~~~-----~e~l~~kf~a~GW~vi- 287 (889)
T TIGR03186 229 EMDEPESIGALSLAARERLDNLVFVINCNLQ---------------RLDGPVRGNGRI-----IDELESQFAGAGWNVI- 287 (889)
T ss_pred hhccHHHHHHHHHHHHhCCCCEEEEEeCCCC---------------ccCCcccccccc-----chHHHHHHHhCCCEEE-
Confidence 999999999999999999 799999999853 344443321010 1223668999999999
Q ss_pred cC---------------------------------------------------------------------CCCCHHHHH
Q 041265 142 PV---------------------------------------------------------------------DGHNLEDLA 152 (309)
Q Consensus 142 ~v---------------------------------------------------------------------DG~D~~~l~ 152 (309)
+| +|||+++|+
T Consensus 288 ~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~ 367 (889)
T TIGR03186 288 KVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLY 367 (889)
T ss_pred EEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHH
Confidence 66 699999999
Q ss_pred HHHHHhhcCCCCCcEEEEEEeeeccCCchhh-------------------------------------------------
Q 041265 153 YVLKQVKAIPDPGAVLIHVITEKEKAMLPLK------------------------------------------------- 183 (309)
Q Consensus 153 ~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e------------------------------------------------- 183 (309)
+|++++++.+ ++|++|.++|+||+|...+.
T Consensus 368 ~A~~~A~~~~-~~PTvIla~TvkG~G~~~~g~~~~~~H~~~~l~~e~~~~~r~~~g~~~~de~~~~~~~~~~~~~s~~~~ 446 (889)
T TIGR03186 368 AAYDRAVRHE-GRPTVILAKTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQLKFYKPDEDSAEMR 446 (889)
T ss_pred HHHHHHHhCC-CCCEEEEEEeeecCCCCcccCccccccCcCcCCHHHHHHHHHHcCCCCChHHhhcccccCCCCCCHHHH
Confidence 9999988653 68999999999999964321
Q ss_pred --------------------------h-----------------hHHHHHhhhc----------------ccccCCCCCc
Q 041265 184 --------------------------L-----------------QQTRLFCKIL----------------DNRMGGGTGL 204 (309)
Q Consensus 184 --------------------------~-----------------~~~~~~~~~l----------------d~dl~~~~~~ 204 (309)
| +.+.+|++.| ++|...+||+
T Consensus 447 ~l~~~r~~l~g~~p~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm 526 (889)
T TIGR03186 447 YLHARRAALGGYLPRRRTAATHALAVPALPSWGRFALDAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGM 526 (889)
T ss_pred HHHHHHHHcCCCCCCCCCCCccccCCCCcchhhhhhccCCCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCc
Confidence 0 1133666663 5898999965
Q ss_pred hh-------------------------hhhhCCCceeeccchHHHHHH--HHHHHhhC----CCeeEEeecHHHH-HhHH
Q 041265 205 NL-------------------------FQKHFPIRCFDVGIAEQHAVT--FAAGLAAE----GLKPFCAIYSSFL-QRCF 252 (309)
Q Consensus 205 ~~-------------------------~~~~~p~r~~~~gIaE~~~vg--~a~GlA~~----G~~pi~~~~~~F~-~ra~ 252 (309)
++ ++|.+|+||||+||+||+|++ +|+|+|++ |++||+.+|++|. +|++
T Consensus 527 ~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~ 606 (889)
T TIGR03186 527 ANLFRQVGIYSPLGQRYEPEDLGSMLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIG 606 (889)
T ss_pred hhhhccccccCcccccCCccchHHHHHHhhcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHH
Confidence 43 457789999999999999999 99999998 8899999999995 9999
Q ss_pred HHHHHhhhhCCCCeEEEEeCCCc--cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 253 DQVAHDVDLQKLPVRFAIDRAGL--VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 253 dqi~~~~a~~~~pv~~~~~~~g~--~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
||||++ ++++.+++++++++|+ .+.+|+|||+.+|+++++++|||+|+.|+|++|+
T Consensus 607 Dqir~a-~~~~a~v~lvG~~aG~tTlg~eG~tHq~~eDial~r~iPn~tv~~PaDa~E~ 664 (889)
T TIGR03186 607 DLIWAA-ADQRARGFLIGATSGKTTLGGEGLQHQDGTSHLAASTVPNCRAWDPAFAYEV 664 (889)
T ss_pred HHHHHH-hhcCCCcEEEEECCCccCCCCCcccccchHhHHHHhhCCCCEEEeCCCHHHH
Confidence 999999 8999999999999999 4789999999999999999999999999999884
No 18
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=4.1e-52 Score=428.05 Aligned_cols=277 Identities=19% Similarity=0.149 Sum_probs=233.6
Q ss_pred CCCcccC--C-CCCCCCCC--------CCcCCchhhHhhHhhcccccccchhhHhHhHh-------cCCCCeEEEEEeCC
Q 041265 1 MRTIRQT--C-GLENVHDA--------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDL-------LGKNNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~--~-g~e~~~d~--------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~-------~~~~~~v~~~~GDG 62 (309)
|++|||. | ||+|+|++ |+||++|+|+++|+ |+|++.|+ +..+++|||++|||
T Consensus 165 L~~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~----------~~A~~~kyl~~~~~~~~~~~rv~~~~GDG 234 (891)
T PRK09405 165 LDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAI----------YQARFLKYLENRGLKDTSDQKVWAFLGDG 234 (891)
T ss_pred HHHhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHH----------HHHHhCccccccccccCCCceEEEEEcch
Confidence 4689996 4 67664332 89999999999999 99999994 45578999999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
||+||++|||+.+|+.++ +||++|+|+|. +++++++.....+ .+....+|+++||+++
T Consensus 235 EldEg~~~EA~~~A~~~~LdNLi~ivD~N~---------------q~lDG~v~~~~~~-----~~~l~~~f~a~GW~Vi- 293 (891)
T PRK09405 235 EMDEPESLGAISLAAREKLDNLIFVINCNL---------------QRLDGPVRGNGKI-----IQELEGIFRGAGWNVI- 293 (891)
T ss_pred hhccHHHHHHHHHHHHhCCCCEEEEEECCC---------------cccCCcccccccc-----chhHHHHHhhCCCEEE-
Confidence 999999999999999999 79999999884 3344444321111 1233668999999999
Q ss_pred cC--------------------------C-------------------------------------------CCCHHHHH
Q 041265 142 PV--------------------------D-------------------------------------------GHNLEDLA 152 (309)
Q Consensus 142 ~v--------------------------D-------------------------------------------G~D~~~l~ 152 (309)
.| | |||+++|+
T Consensus 294 ~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~ 373 (891)
T PRK09405 294 KVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVY 373 (891)
T ss_pred EEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHH
Confidence 66 4 99999999
Q ss_pred HHHHHhhcCCCCCcEEEEEEeeeccCC-chhh------------------------------------------------
Q 041265 153 YVLKQVKAIPDPGAVLIHVITEKEKAM-LPLK------------------------------------------------ 183 (309)
Q Consensus 153 ~al~~a~~~~~~~P~~I~~~T~kg~G~-~~~e------------------------------------------------ 183 (309)
+|++.+++.+ ++|++|.++|+||+|. +..|
T Consensus 374 ~A~~~A~~~~-~~PtvIia~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~ 452 (891)
T PRK09405 374 AAYKAAVEHK-GQPTVILAKTIKGYGMGEAGEGKNIAHQVKKLDLDDLKHFRDRFNIPISDEQLEKLPYYKPGEDSPEIK 452 (891)
T ss_pred HHHHHHHhCC-CCCEEEEEeceecCCCCcccCCCccccCCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHH
Confidence 9999888643 6799999999999997 3211
Q ss_pred ----------------------------h--------------hHHHHHhhhc----------------ccccCCCCCc-
Q 041265 184 ----------------------------L--------------QQTRLFCKIL----------------DNRMGGGTGL- 204 (309)
Q Consensus 184 ----------------------------~--------------~~~~~~~~~l----------------d~dl~~~~~~- 204 (309)
+ +.+.+|++.| |||.+.+|++
T Consensus 453 ~l~~~r~~l~g~~p~r~~~~~~~~~P~~~~~~~~~~~~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~ 532 (891)
T PRK09405 453 YLHERRKALGGYLPARRPKFEPLEVPALSAFEALLKGSGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGME 532 (891)
T ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCChhhHHHhhccCCCCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcc
Confidence 0 1245677665 5999998888
Q ss_pred ------------------------hhhhhhCCCceeeccchHHHHHH--HHHHHhhC----CCeeEEeecHHH-HHhHHH
Q 041265 205 ------------------------NLFQKHFPIRCFDVGIAEQHAVT--FAAGLAAE----GLKPFCAIYSSF-LQRCFD 253 (309)
Q Consensus 205 ------------------------~~~~~~~p~r~~~~gIaE~~~vg--~a~GlA~~----G~~pi~~~~~~F-~~ra~d 253 (309)
..|+|+||+||||+||+||+|++ +|+|+|++ |++||+.+|++| ++|++|
T Consensus 533 ~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~D 612 (891)
T PRK09405 533 GLFRQIGIYNPHGQLYTPVDRDQLMYYKESKDGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGD 612 (891)
T ss_pred hhhccccccccccccccccccHHHHHHHHcCCCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHH
Confidence 45678899999999999999999 99999998 889999999999 699999
Q ss_pred HHHHhhhhCCCCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 254 QVAHDVDLQKLPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 254 qi~~~~a~~~~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
|||++++++..+|++.++++|. .+.+|.|||+.+|+.+++++||++|++|+|++|+
T Consensus 613 qir~a~~~~~~~v~iggt~gg~tl~~eG~qHqdg~s~~l~raiPn~tv~~PADa~E~ 669 (891)
T PRK09405 613 LAWAAGDQRARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCVSYDPAFAYEV 669 (891)
T ss_pred HHHHHHHhcCCCeEEEEECccccCCCCcccCCchhhHHHHhhCCCCEEEeCCCHHHH
Confidence 9999999999999999999999 5778999999999999999999999999999884
No 19
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=4e-51 Score=422.13 Aligned_cols=277 Identities=18% Similarity=0.179 Sum_probs=229.2
Q ss_pred CCCcccC---CCCCCCCCC--------CCcCCchhhHhhHhhcccccccchhhHhHhHh-------cCCCCeEEEEEeCC
Q 041265 1 MRTIRQT---CGLENVHDA--------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDL-------LGKNNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~---~g~e~~~d~--------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~-------~~~~~~v~~~~GDG 62 (309)
|++|||. +|++++|++ |+||++|+|+++|+ |+|++.|+ +..+++|||++|||
T Consensus 173 L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai----------~~A~~~ryl~~~g~~~~~~~~v~~~lGDG 242 (896)
T PRK13012 173 LDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAI----------YQARFMRYLQHRGLKDTSGRKVWGFFGDG 242 (896)
T ss_pred HHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHH----------HHHHhcccccccccccCCCCeEEEEEchh
Confidence 4688988 566655442 89999999999999 99999983 45678999999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
|++||++|||+.+|+.++ +||++|+|+|. +++++++..+-.+ .++...+|+++||+++
T Consensus 243 El~Eg~~~eA~~~A~~~~LdNLi~ivD~N~---------------~~lDG~v~~~~~~-----~~~l~~~f~a~GW~Vi- 301 (896)
T PRK13012 243 EMDEPESIAALSLAAREGLDNLVFVINCNL---------------QRLDGPVRGNGRI-----IQELEALFRGAGWNVI- 301 (896)
T ss_pred hhccHHHHHHHHHHHHhCCCcEEEEEECCC---------------ccccCcccccccc-----chHHHHHHHhCCCEEE-
Confidence 999999999999999999 79999999985 3344444322111 1233678999999999
Q ss_pred cC--------------------------C-------------------------------------------CCCHHHHH
Q 041265 142 PV--------------------------D-------------------------------------------GHNLEDLA 152 (309)
Q Consensus 142 ~v--------------------------D-------------------------------------------G~D~~~l~ 152 (309)
.| | |||+++|+
T Consensus 302 ~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~ 381 (896)
T PRK13012 302 KVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVY 381 (896)
T ss_pred EEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHH
Confidence 66 8 99999999
Q ss_pred HHHHHhhcCCCCCcEEEEEEeeeccCCchh-h------------------------------------------------
Q 041265 153 YVLKQVKAIPDPGAVLIHVITEKEKAMLPL-K------------------------------------------------ 183 (309)
Q Consensus 153 ~al~~a~~~~~~~P~~I~~~T~kg~G~~~~-e------------------------------------------------ 183 (309)
+|++.+++.+ ++|++|.++|+||+|.+.. |
T Consensus 382 ~A~~~a~~~~-~~PtvIla~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~p~~d~~~~~~pf~~p~~~~~~~~ 460 (896)
T PRK13012 382 AAYAAAVRHK-GQPTVILAKTKKGYGMGEAGEGRMTTHQQKKLDVEALKAFRDRFRLPLSDEQLEQLPFYKPAEDSPEMR 460 (896)
T ss_pred HHHHHHHhCC-CCCEEEEEEeeecCCCCcccCCCcccccCCCCCHHHHHHHHHHcCCCCChhhhccCCCcCCccccHHHH
Confidence 9999887653 5799999999999996521 1
Q ss_pred -------------------------h-----------------hHHHHHhhhc----------------ccccCCCCCch
Q 041265 184 -------------------------L-----------------QQTRLFCKIL----------------DNRMGGGTGLN 205 (309)
Q Consensus 184 -------------------------~-----------------~~~~~~~~~l----------------d~dl~~~~~~~ 205 (309)
+ +.+.+|++.| +||+..+||++
T Consensus 461 ~l~~r~~~l~g~~P~r~~~~~~l~~p~~~~~~~~~~~~~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~ 540 (896)
T PRK13012 461 YLHARRAALGGYLPRRRTAAPPLPVPPLSAFAQFALGAGGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMA 540 (896)
T ss_pred HHHHHHHHhcCcCCcccccccccCCCchhhHHHhhcccCCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcc
Confidence 0 0123455444 58999888763
Q ss_pred h-------------------------hhhhCCCceeeccchHHHHHH--HHHHHhhC----CCeeEEeecHHH-HHhHHH
Q 041265 206 L-------------------------FQKHFPIRCFDVGIAEQHAVT--FAAGLAAE----GLKPFCAIYSSF-LQRCFD 253 (309)
Q Consensus 206 ~-------------------------~~~~~p~r~~~~gIaE~~~vg--~a~GlA~~----G~~pi~~~~~~F-~~ra~d 253 (309)
+ |+|++|+|+|++||+|++|++ +|+|+|++ |++||+.+|++| .+|++|
T Consensus 541 ~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~D 620 (896)
T PRK13012 541 NLFRQVGIYSPLGQLYEPEDAGSLLYYREAKDGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGD 620 (896)
T ss_pred cccccccccccccccccccchhHHhhhhhCCCCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHH
Confidence 2 457789999999999999999 99999876 679999999999 699999
Q ss_pred HHHHhhhhCCCCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 254 QVAHDVDLQKLPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 254 qi~~~~a~~~~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
|||++++++..+++++++++++ .+++|+|||+.+|++++|++||++|+.|+|++|+
T Consensus 621 qir~a~~~~~~~vlig~T~gg~tlg~dG~THQ~~eslal~RaIPN~~V~~PADa~E~ 677 (896)
T PRK13012 621 LIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGHSHLLASTIPNCRAYDPAFAYEL 677 (896)
T ss_pred HHHHHHhcccCCeEEEEeCcccccCCCCCCCcchHhHHHHHhCCCCEEEeCCCHHHH
Confidence 9999988888889999999998 6889999999999999999999999999999884
No 20
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=100.00 E-value=4.1e-39 Score=328.67 Aligned_cols=276 Identities=19% Similarity=0.145 Sum_probs=222.3
Q ss_pred CCCccc---CCCCCCCCCC--------CCcCCchhhHhhHhhcccccccchhhHhHhHh-------cCCCCeEEEEEeCC
Q 041265 1 MRTIRQ---TCGLENVHDA--------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDL-------LGKNNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~---~~g~e~~~d~--------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~-------~~~~~~v~~~~GDG 62 (309)
|++||| .+|++++|++ |+||++|+|+++|+ |+|++.|+ +..+++|||++|||
T Consensus 159 L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~Av----------G~Ala~Kyl~~rg~~~~~~~rVyvllGDG 228 (885)
T TIGR00759 159 LDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAI----------YQARFMKYLENRGLKDTGDQKVWAFLGDG 228 (885)
T ss_pred HHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHH----------HHHHHHHHHHhhccCCCCCceEEEEEcch
Confidence 468999 4566655442 99999999999999 99999997 56778999999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
|++||++|||+.+|+.++ +||++|+|+|.. |+++++...-.+ .+....+|+++||+++
T Consensus 229 EldEG~swEA~~~Aa~~kLdNLi~IVD~N~~---------------qlDG~v~~~~~i-----~e~le~~F~a~GW~Vi- 287 (885)
T TIGR00759 229 EMDEPESKGAITFAAREKLDNLTFVINCNLQ---------------RLDGPVRGNGKI-----IQELESLFRGAGWNVI- 287 (885)
T ss_pred hhccHHHHHHHHHHHHhCCCCEEEEEeCCCC---------------ccCCcccccccc-----chhHHHHHHhcCCEEE-
Confidence 999999999999999999 799999999853 344443321111 1223668999999999
Q ss_pred cC---------------------------------------------------------------------CCCCHHHHH
Q 041265 142 PV---------------------------------------------------------------------DGHNLEDLA 152 (309)
Q Consensus 142 ~v---------------------------------------------------------------------DG~D~~~l~ 152 (309)
.| +|||+++|+
T Consensus 288 ~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~ 367 (885)
T TIGR00759 288 KVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVY 367 (885)
T ss_pred EEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHH
Confidence 66 699999999
Q ss_pred HHHHHhhcCCCCCcEEEEEEeeeccCCch-hh------------------------------------------------
Q 041265 153 YVLKQVKAIPDPGAVLIHVITEKEKAMLP-LK------------------------------------------------ 183 (309)
Q Consensus 153 ~al~~a~~~~~~~P~~I~~~T~kg~G~~~-~e------------------------------------------------ 183 (309)
+|++.+++.+ ++|++|.++|+||+|.++ .|
T Consensus 368 ~A~~~A~~~~-grPTvIlA~TvKG~G~~~~~e~~n~~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~~~~~~~~~s~e~~ 446 (885)
T TIGR00759 368 AAYAAAQEHK-GQPTVILAKTIKGYGMGDAAESRNTAHQVKKLEVDALKNFRDRFELPLSDAQVEELPYYHPGEGSPEVR 446 (885)
T ss_pred HHHHHHHhCC-CCCEEEEEeeeecCCCChhhCCCcccccCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCCCHHHH
Confidence 9999887653 579999999999999762 12
Q ss_pred ------------------------------------------hhHHHHHhhhc----------------ccccCCCCCch
Q 041265 184 ------------------------------------------LQQTRLFCKIL----------------DNRMGGGTGLN 205 (309)
Q Consensus 184 ------------------------------------------~~~~~~~~~~l----------------d~dl~~~~~~~ 205 (309)
.+.+.+|++-| .||-..+||++
T Consensus 447 y~~~rr~~Lgg~~p~R~~~~~~l~vP~l~~~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm~ 526 (885)
T TIGR00759 447 YLLARRQALGGYLPARRTFAEHLTVPALEFFGALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGME 526 (885)
T ss_pred HHHHHHHHhCCCCCCcCCCCCCCCCCCchhhHHHhcCCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccccCChH
Confidence 01123444444 27888888887
Q ss_pred hhhhh-------------------------CCCceeeccchHHHHHH--HHHHHhhC--C--CeeEEeecHHH-HHhHHH
Q 041265 206 LFQKH-------------------------FPIRCFDVGIAEQHAVT--FAAGLAAE--G--LKPFCAIYSSF-LQRCFD 253 (309)
Q Consensus 206 ~~~~~-------------------------~p~r~~~~gIaE~~~vg--~a~GlA~~--G--~~pi~~~~~~F-~~ra~d 253 (309)
++.++ -.+|+++.||+|.+.++ .|+|.+.+ | ++||+..|++| ++|..|
T Consensus 527 g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR~gD 606 (885)
T TIGR00759 527 GLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGD 606 (885)
T ss_pred HhhcccCccCCCCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccchHH
Confidence 65332 23489999999999999 77777763 4 78999999999 999999
Q ss_pred HHHHhhhhCCCCeEEEEeCCCc-c-CCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 254 QVAHDVDLQKLPVRFAIDRAGL-V-GADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 254 qi~~~~a~~~~pv~~~~~~~g~-~-g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
.+|.. +.+.+.-.++++.+|. + ..+|.+||+.....+..++||++.+.|+.++||
T Consensus 607 ~~waa-~d~~argfl~g~taGrtTL~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~El 663 (885)
T TIGR00759 607 LCWAA-ADQRARGFLLGATAGRTTLNGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEV 663 (885)
T ss_pred HHHHH-hhhcCCceEeccCCCcccCCCccccCccccchHHHhcCCCceeecCchHHHH
Confidence 99886 7999999999999999 3 457999999999899999999999999999886
No 21
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-34 Score=253.09 Aligned_cols=143 Identities=23% Similarity=0.320 Sum_probs=123.8
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHH
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEA 72 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EA 72 (309)
|++|++.||. |+||+. .+||++|||||+|+ |||++.|+++.+.+|||++|||||+||++|||
T Consensus 92 L~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvav----------GmAlg~kl~~~~~~VyvilGDGEl~EG~~WEA 161 (243)
T COG3959 92 LETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAV----------GMALGAKLKGSPYRVYVILGDGELDEGQVWEA 161 (243)
T ss_pred HHHhccCCCcCCCCCccCCCCceeecCCcccccchHHH----------HHHHHHhhcCCCceEEEEecCcccccccHHHH
Confidence 4689999996 999887 89999999999999 99999999999999999999999999999999
Q ss_pred HHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHH
Q 041265 73 INNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDL 151 (309)
Q Consensus 73 ln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l 151 (309)
++.|++++ +||+.|+|.|.. |.++...++ +. ..+...+||+|||+++ +|||||+++|
T Consensus 162 am~Aah~~L~NLiaivD~N~~---------------QldG~t~~i---~~---~~pL~~k~eAFGw~V~-evdG~d~~~i 219 (243)
T COG3959 162 AMTAAHYKLDNLIAIVDRNKL---------------QLDGETEEI---MP---KEPLADKWEAFGWEVI-EVDGHDIEEI 219 (243)
T ss_pred HHHHHHhccCcEEEEEecCCc---------------ccCCchhhc---cC---cchhHHHHHhcCceEE-EEcCcCHHHH
Confidence 99999999 899988777743 344443222 11 2344678999999999 9999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 152 AYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 152 ~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
.+++.+++..+ ++|++|+++|+||
T Consensus 220 ~~a~~~~~~~~-~rP~~IIa~Tvkg 243 (243)
T COG3959 220 VEALEKAKGSK-GRPTVIIAKTVKG 243 (243)
T ss_pred HHHHHhhhccC-CCCeEEEEecccC
Confidence 99999998753 4899999999986
No 22
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.5e-35 Score=263.38 Aligned_cols=125 Identities=36% Similarity=0.596 Sum_probs=118.7
Q ss_pred hhHHHHHhhhc-------------ccccCCCCCchhhhhhCCCceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHH-
Q 041265 184 LQQTRLFCKIL-------------DNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQ- 249 (309)
Q Consensus 184 ~~~~~~~~~~l-------------d~dl~~~~~~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~- 249 (309)
.+++++|+++| |+|+.+|+++..|.++||+||+|+||+||+|+|+|+|+|+.|++||+++|+.|+.
T Consensus 7 ~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~tfa~F~s~ 86 (312)
T COG3958 7 ESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVSTFAAFLSR 86 (312)
T ss_pred hHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceeechHHHHHH
Confidence 35677888877 6999999999999999999999999999999999999999999999999999985
Q ss_pred hHHHHHHHhhhhCCCCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCC
Q 041265 250 RCFDQVAHDVDLQKLPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVL 308 (309)
Q Consensus 250 ra~dqi~~~~a~~~~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e 308 (309)
|++|||+|+++++++||+++++|+|+ .+++|+|||+.||+++||.+||++|++|+|+.|
T Consensus 87 Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~ 146 (312)
T COG3958 87 RAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVE 146 (312)
T ss_pred HHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHH
Confidence 99999999999999999999999999 688999999999999999999999999999864
No 23
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=2.1e-33 Score=292.33 Aligned_cols=256 Identities=14% Similarity=0.113 Sum_probs=198.4
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCC------CeEEEEEeCCcc-ccchHHHHHHHHhhccCc---EEEEE
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKN------NHVISVIVEGAT-IARMSYEAINNAGVLNKA---LKRLH 87 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~------~~v~~~~GDG~l-~eG~~~EAln~A~~~~~~---Li~i~ 87 (309)
..+|++...|+|+ |.|+|.++++.+ ..++|++|||++ ++|.+||+||+|+.|+.| +++|+
T Consensus 312 npShleav~Pva~----------G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvv 381 (924)
T PRK09404 312 NPSHLEIVNPVVE----------GSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIV 381 (924)
T ss_pred CccccccccCeeh----------hHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEE
Confidence 4588999999999 999999998877 789999999998 799999999999999976 99999
Q ss_pred eCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC--CCCC
Q 041265 88 SNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI--PDPG 165 (309)
Q Consensus 88 ~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~--~~~~ 165 (309)
+||+|+..++.. + +.+ ..+ ..++.+++|+..+ .|||+|+++++++++.+.+. +++|
T Consensus 382 eNNq~g~tT~~~---~----~~s------~~~--------~sd~Ak~~giP~~-~VDG~D~~AV~~a~~~A~e~~r~g~g 439 (924)
T PRK09404 382 INNQIGFTTSPP---D----DRS------TPY--------CTDVAKMVQAPIF-HVNGDDPEAVVFATRLALEYRQKFKK 439 (924)
T ss_pred EeCCEEEeeCHH---H----hcc------chh--------HHHHHeecCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCc
Confidence 999998877654 1 111 011 1345689999999 99999999999888754321 2389
Q ss_pred cEEEEEEeeeccCCchhh--------------------------------------------------------h-----
Q 041265 166 AVLIHVITEKEKAMLPLK--------------------------------------------------------L----- 184 (309)
Q Consensus 166 P~~I~~~T~kg~G~~~~e--------------------------------------------------------~----- 184 (309)
|++|++.|+|-.|+...+ .
T Consensus 440 PvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~~~ 519 (924)
T PRK09404 440 DVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPA 519 (924)
T ss_pred CEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999988854321 0
Q ss_pred -----hHH------------------------------------------------------------H----HHhhhc-
Q 041265 185 -----QQT------------------------------------------------------------R----LFCKIL- 194 (309)
Q Consensus 185 -----~~~------------------------------------------------------------~----~~~~~l- 194 (309)
.|. . ||+..|
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~ 599 (924)
T PRK09404 520 DWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLD 599 (924)
T ss_pred cccccccccccccccccccCCCCCHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHh
Confidence 000 0 011111
Q ss_pred -c-------cc-----------------cCCCCC-chhhhhhC-CCceeeccchHHHHHHHHHHHhhCCCee--EEe-ec
Q 041265 195 -D-------NR-----------------MGGGTG-LNLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAEGLKP--FCA-IY 244 (309)
Q Consensus 195 -d-------~d-----------------l~~~~~-~~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~G~~p--i~~-~~ 244 (309)
| -| .++.++ +++|.++| |.|++|+||+|.+++|++.|+|+.|++| |++ +|
T Consensus 600 ~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qf 679 (924)
T PRK09404 600 EGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQF 679 (924)
T ss_pred CCCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 1 12 345555 38899999 8999999999999999999999999964 886 69
Q ss_pred HHHHH---hHHHHHHHhh-hh--CCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcC--CCcEEEEeCCCC
Q 041265 245 SSFLQ---RCFDQVAHDV-DL--QKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACL--PNMVVMKDIKLV 307 (309)
Q Consensus 245 ~~F~~---ra~dqi~~~~-a~--~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~i--P~~~v~~Ps~~~ 307 (309)
.||+. .++||+.+.. ++ ...+++++++++ +.| .|+.||+..-+.+|.+. |||+|+.|++|+
T Consensus 680 gDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p~G-~~g-~g~~hsS~~~E~~l~~~~~~gl~Vv~pstpa 748 (924)
T PRK09404 680 GDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPHG-YEG-QGPEHSSARLERFLQLCAEDNMQVCNPTTPA 748 (924)
T ss_pred cccccchHHHHHHHHHHHHHHhcCccCeEEEecCc-CCC-CChhhhccCHHHHHHhCCCCCCEEEecCCHH
Confidence 99984 7799998885 44 246899999987 423 47888887777899666 699999999985
No 24
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=6.1e-33 Score=287.80 Aligned_cols=257 Identities=14% Similarity=0.141 Sum_probs=196.7
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCC------CCeEEEEEeCCcc-ccchHHHHHHHHhhccCcE---EEE
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGK------NNHVISVIVEGAT-IARMSYEAINNAGVLNKAL---KRL 86 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~------~~~v~~~~GDG~l-~eG~~~EAln~A~~~~~~L---i~i 86 (309)
.+.+|++...|+++ |.|.|.++++. +..++|++|||++ ++|.+||+||+|+.|+.|+ ++|
T Consensus 312 ~npSHLeav~Pva~----------G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfv 381 (929)
T TIGR00239 312 FNPSHLEIVSPVVI----------GSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHI 381 (929)
T ss_pred CCCcccccccchhh----------hHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEE
Confidence 67789999999999 99999988865 4678999999996 8999999999999999997 999
Q ss_pred EeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC--CCC
Q 041265 87 HSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI--PDP 164 (309)
Q Consensus 87 ~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~--~~~ 164 (309)
++||+|+.+++.. .+.+. .+ ..++.+++|+..+ .|||+|+++++++++.+.+. +++
T Consensus 382 veNNqyg~tT~~~-------~~~s~------~~--------~sd~Ak~ygiP~~-~VDG~D~~AV~~a~~~Ave~~r~g~ 439 (929)
T TIGR00239 382 IINNQIGFTTNPL-------DARST------PY--------CSDLAKMIQAPIF-HVNADDPEAVAFATRLAVEYRNTFK 439 (929)
T ss_pred EEeCCEEEEEcHH-------HhcCc------cC--------HHHHheecCCCEE-EECCCCHHHHHHHHHHHHHHHHhcC
Confidence 9999998877543 11110 01 1335688999999 99999999999888754321 238
Q ss_pred CcEEEEEEeeeccCCch---------hh--------------------------------------------------h-
Q 041265 165 GAVLIHVITEKEKAMLP---------LK--------------------------------------------------L- 184 (309)
Q Consensus 165 ~P~~I~~~T~kg~G~~~---------~e--------------------------------------------------~- 184 (309)
||++|++.|+|-.|+.. .+ +
T Consensus 440 gPvlIE~~tYR~~GHne~D~p~~yrp~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~ 519 (929)
T TIGR00239 440 RDVFIDLVGYRRHGHNEADEPSATQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWRE 519 (929)
T ss_pred CCEEEEEEeccCCCCCCCCCCccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 99999999999877532 11 0
Q ss_pred ------hH-------------------------------------------------------------HHH----Hhhh
Q 041265 185 ------QQ-------------------------------------------------------------TRL----FCKI 193 (309)
Q Consensus 185 ------~~-------------------------------------------------------------~~~----~~~~ 193 (309)
.| .+| |+..
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~g~~~~~~~~A~~~A~~~~ 599 (929)
T TIGR00239 520 MNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTKAMAAGEKLFDWGGAENLAFATL 599 (929)
T ss_pred ccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 00 000 0000
Q ss_pred c--c-------ccc-----------------CCCCC-chhhhhhC-CCceeeccchHHHHHHHHHHHhhCCCeeE--Ee-
Q 041265 194 L--D-------NRM-----------------GGGTG-LNLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAEGLKPF--CA- 242 (309)
Q Consensus 194 l--d-------~dl-----------------~~~~~-~~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~G~~pi--~~- 242 (309)
| | -|. ++.++ +++|.++| +.|++||||+|.+++|++.|+|+.|.+|+ ++
T Consensus 600 l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~~~G~a~~g~~~l~i~E~ 679 (929)
T TIGR00239 600 VDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFEYGYATTSPRTLVIWEA 679 (929)
T ss_pred HhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHHHHHHHhHHhcCCCCceEEEE
Confidence 0 1 122 23334 37888999 89999999999999999999999998875 55
Q ss_pred ecHHHHH---hHHHHHHHh-hhh--CCCCeEEEEeCCCccCCCCCCCCChhHHHHH--hcCCCcEEEEeCCCC
Q 041265 243 IYSSFLQ---RCFDQVAHD-VDL--QKLPVRFAIDRAGLVGADGPTHCGAFDTTFM--ACLPNMVVMKDIKLV 307 (309)
Q Consensus 243 ~~~~F~~---ra~dqi~~~-~a~--~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~--~~iP~~~v~~Ps~~~ 307 (309)
+|.||+. .++||+.+. .++ ...+++++.+++ +.| .|+.||+..-+.+| .+.|||+|+.|++|+
T Consensus 680 qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~G-~~g-~g~~hsS~~~E~~lql~~~~gl~Vv~pstpa 750 (929)
T TIGR00239 680 QFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPHG-YEG-QGPEHSSGRLERFLQLAAEQNMQVCVPTTPA 750 (929)
T ss_pred eccchhcchHHHHHHHHHHHHHHhcCccCeEEEecCc-CCC-CCchhhccCHHHHHHHhCCCCCEEEecCCHH
Confidence 7999984 779999888 344 246799999986 423 47788887777888 899999999999986
No 25
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=100.00 E-value=2.5e-33 Score=252.56 Aligned_cols=160 Identities=46% Similarity=0.678 Sum_probs=105.1
Q ss_pred CCCcccCCCC-------CCCCCCCCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHH
Q 041265 1 MRTIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAI 73 (309)
Q Consensus 1 ~~~~r~~~g~-------e~~~d~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAl 73 (309)
|.|+||+||+ ||+||.|++||+|++||+|+ |||.|+++++++.+||+++|||+|+.|++||||
T Consensus 85 f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~----------Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EAL 154 (270)
T PF13292_consen 85 FHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAAL----------GMAVARDLKGEDRKVVAVIGDGALTGGMAFEAL 154 (270)
T ss_dssp GGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHH----------HHHHHHHHHTS---EEEEEETTGGGSHHHHHHH
T ss_pred hchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHH----------HHHHHHHhcCCCCcEEEEECCcchhHHHHHHHH
Confidence 5799999999 99999999999999999999 999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCcchhhhhhhhhcccchhhcc--CCcc--------------cchhhhH---HhhhcCccchhhhh
Q 041265 74 NNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKF--GGQM--------------HEIDAFS---REIEAGSRACFFED 134 (309)
Q Consensus 74 n~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~--~~~~--------------~~~~~~~---~~~~~~~~~~~f~a 134 (309)
|+|+..+.++++|.++|+.+++.+....++ .+.++ .... ..+.+.+ +..+....+++||+
T Consensus 155 N~~g~~~~~liVILNDN~mSIs~nvGals~-~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~lFe~ 233 (270)
T PF13292_consen 155 NNAGHLKSNLIVILNDNEMSISPNVGALSK-YLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNLFEE 233 (270)
T ss_dssp HHHHHHT-SEEEEEEE-SBSSSB--SSHCC-C-------------------------------------------CCCHH
T ss_pred HHHHhcCCCEEEEEeCCCcccCCCcchHHH-HHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHHH
Confidence 999999977776544445655443310000 00000 0000 0001111 11111112378999
Q ss_pred cCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 041265 135 LGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVIT 173 (309)
Q Consensus 135 ~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T 173 (309)
+||+|+|++||||+++|.++|+++|+. ++|++||++|
T Consensus 234 LG~~Y~GPiDGHdl~~Li~~l~~~K~~--~gPvllHV~T 270 (270)
T PF13292_consen 234 LGFDYIGPIDGHDLEELIEVLENAKDI--DGPVLLHVIT 270 (270)
T ss_dssp CT-EEEEEEETT-HHHHHHHHHHHCCS--SSEEEEEEE-
T ss_pred cCCeEEeccCCCCHHHHHHHHHHHhcC--CCCEEEEEeC
Confidence 999999999999999999999999987 9999999998
No 26
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.97 E-value=1.2e-32 Score=259.95 Aligned_cols=149 Identities=23% Similarity=0.296 Sum_probs=119.4
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhcC----------CCCeEEEEEeCC
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLG----------KNNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~----------~~~~v~~~~GDG 62 (309)
|++||+.|+. ++||+. ++||++|||||+|+ |||+|.|+++ .+++|||++|||
T Consensus 84 L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~av----------G~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDG 153 (332)
T PF00456_consen 84 LKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAV----------GMALAEKMLGARFNKPGFDIIDHRVYVLMGDG 153 (332)
T ss_dssp HTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHH----------HHHHHHHHHHHHHHBTTBSTTT--EEEEEEHH
T ss_pred HHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHH----------HHHHHHHHHHhhhcccccccccceEEEEecCc
Confidence 4689999999 888873 89999999999999 9999998754 367899999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
||+||++|||+.+|+.++ +||++|+|+|+.+ +++.+..+ +.++...+|++|||+++
T Consensus 154 el~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q---------------~dg~~~~~-------~~~~~~~k~~a~Gw~v~- 210 (332)
T PF00456_consen 154 ELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQ---------------IDGPTDIV-------FSEDIAKKFEAFGWNVI- 210 (332)
T ss_dssp HHHSHHHHHHHHHHHHTT-TTEEEEEEEESEE---------------TTEEGGGT-------HHSHHHHHHHHTT-EEE-
T ss_pred cccchhhHHHHHHHHHhCCCCEEEEEecCCcc---------------cCCCcccc-------cchHHHHHHHHhhhhhc-
Confidence 999999999999999999 8999999998643 33222111 12334668999999999
Q ss_pred cC-CCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh
Q 041265 142 PV-DGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK 183 (309)
Q Consensus 142 ~v-DG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e 183 (309)
+| ||||+++|.+||+++++.+ ++|++|+++|+||+|.+..|
T Consensus 211 ~v~dGhd~~~i~~A~~~a~~~~-~kP~~Ii~~TvkG~G~~~~e 252 (332)
T PF00456_consen 211 EVCDGHDVEAIYAAIEEAKASK-GKPTVIIARTVKGKGVPFME 252 (332)
T ss_dssp EEEETTBHHHHHHHHHHHHHST-SS-EEEEEEE-TTTTSTTTT
T ss_pred ccccCcHHHHHHHHHHHHHhcC-CCCceeecceEEecCchhhc
Confidence 65 9999999999999998753 78999999999999998776
No 27
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.97 E-value=9.8e-32 Score=236.95 Aligned_cols=140 Identities=49% Similarity=0.743 Sum_probs=121.9
Q ss_pred CCCcccCCCCCCCCC-------CCCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHH
Q 041265 1 MRTIRQTCGLENVHD-------AFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAI 73 (309)
Q Consensus 1 ~~~~r~~~g~e~~~d-------~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAl 73 (309)
|++||+.++++++|+ .+++|++|+++|+|+ |+|+|.|+++++.+|||++|||+++||++||||
T Consensus 49 l~~~~~~~~~~g~p~~~~~~~~~~~~G~lG~gl~~A~----------G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal 118 (195)
T cd02007 49 FHTLRQYGGLSGFTKRSESEYDAFGTGHSSTSISAAL----------GMAVARDLKGKKRKVIAVIGDGALTGGMAFEAL 118 (195)
T ss_pred HhhhhcCCCCCCCCcCCCCCCceECCCchhhhHHHHH----------HHHHHHHHhCCCCeEEEEEcccccccChHHHHH
Confidence 568999999855544 389999999999999 999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHH
Q 041265 74 NNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAY 153 (309)
Q Consensus 74 n~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~ 153 (309)
++|+.+++||++|++||+|+..++. . + ...+|+++||++..++||||++++.+
T Consensus 119 ~~A~~~~~~li~vvdnN~~~~~~~~---------------~---~---------~~~~~~a~G~~~~~~vdG~d~~~l~~ 171 (195)
T cd02007 119 NNAGYLKSNMIVILNDNEMSISPNV---------------G---T---------PGNLFEELGFRYIGPVDGHNIEALIK 171 (195)
T ss_pred HHHHHhCCCEEEEEECCCcccCCCC---------------C---C---------HHHHHHhcCCCccceECCCCHHHHHH
Confidence 9999999999999999987532111 1 1 13468999999985589999999999
Q ss_pred HHHHhhcCCCCCcEEEEEEeeeccCC
Q 041265 154 VLKQVKAIPDPGAVLIHVITEKEKAM 179 (309)
Q Consensus 154 al~~a~~~~~~~P~~I~~~T~kg~G~ 179 (309)
+++++++. ++|++|+++|+|||||
T Consensus 172 a~~~a~~~--~~P~~I~~~T~kg~g~ 195 (195)
T cd02007 172 VLKEVKDL--KGPVLLHVVTKKGKGY 195 (195)
T ss_pred HHHHHHhC--CCCEEEEEEEecccCc
Confidence 99999875 8899999999999997
No 28
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=99.97 E-value=1.2e-31 Score=228.40 Aligned_cols=115 Identities=51% Similarity=0.842 Sum_probs=108.9
Q ss_pred ccccCCCCCchhhhhhCCCceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCC
Q 041265 195 DNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAG 274 (309)
Q Consensus 195 d~dl~~~~~~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g 274 (309)
++|++.+.++++|.++||+|++|+||+|++|+|+|+|||+.|++||+++|++|++|++|||+++++++++||+++++++|
T Consensus 21 ~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~f~~ra~dqi~~~~a~~~~pv~~~~~~~g 100 (156)
T cd07033 21 SADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTFSFFLQRAYDQIRHDVALQNLPVKFVGTHAG 100 (156)
T ss_pred ECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHHCCCeEEEEECHHHHHHHHHHHHHHHhccCCCeEEEEECCc
Confidence 48888778889999999999999999999999999999999999999999888899999999999999999999999998
Q ss_pred c-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 275 L-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 275 ~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
+ .+++|+|||+++|+++|+++||++|++|+|+.|+
T Consensus 101 ~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~ 136 (156)
T cd07033 101 ISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANET 136 (156)
T ss_pred EecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHH
Confidence 8 5689999999999999999999999999998763
No 29
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.97 E-value=2.9e-30 Score=245.28 Aligned_cols=151 Identities=17% Similarity=0.064 Sum_probs=123.4
Q ss_pred CCCcccCCC---CCCCCC-------C-CCcCCchhhHhhHhhcccccccchhhHhHhHh-------cCCCCeEEEEEeCC
Q 041265 1 MRTIRQTCG---LENVHD-------A-FGVGHSSTSISAGLRTRINYFRYVGMAVGRDL-------LGKNNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~~g---~e~~~d-------~-~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~-------~~~~~~v~~~~GDG 62 (309)
|++|||+|| ++++|+ + ++||++|+|||+|+ |+|+|.|+ .+.+++|||++|||
T Consensus 88 L~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~Av----------GmAla~r~l~a~~~~~~~~~rvyvllGDG 157 (386)
T cd02017 88 LDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAI----------YQARFNRYLEDRGLKDTSDQKVWAFLGDG 157 (386)
T ss_pred HHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHH----------HHHHHHHHHHhhhccCCCCCeEEEEEccc
Confidence 468999999 655442 2 89999999999999 99999998 55788999999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
|++||++|||+++|+.++ +||++|+|+|+++ +++++..+- +..++...+|++|||+++
T Consensus 158 El~EG~vwEA~~~Ag~~kL~NLivIvD~N~~q---------------idG~t~~v~-----~~~e~l~~kf~AfGW~vi- 216 (386)
T cd02017 158 EMDEPESLGAIGLAAREKLDNLIFVVNCNLQR---------------LDGPVRGNG-----KIIQELEGIFRGAGWNVI- 216 (386)
T ss_pred ccccHHHHHHHHHHHHhCCCCEEEEEECCCCc---------------cCCcccccc-----cCchhHHHHHHhcCCEEE-
Confidence 999999999999999999 7999998888653 222222110 001233678999999999
Q ss_pred cCC---------------------------------------------------------------------CCCHHHHH
Q 041265 142 PVD---------------------------------------------------------------------GHNLEDLA 152 (309)
Q Consensus 142 ~vD---------------------------------------------------------------------G~D~~~l~ 152 (309)
+|| |||+++|.
T Consensus 217 ~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~ 296 (386)
T cd02017 217 KVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVY 296 (386)
T ss_pred EEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCCCHHHHH
Confidence 887 99999999
Q ss_pred HHHHHhhcCCCCCcEEEEEEeeeccCCch-hh
Q 041265 153 YVLKQVKAIPDPGAVLIHVITEKEKAMLP-LK 183 (309)
Q Consensus 153 ~al~~a~~~~~~~P~~I~~~T~kg~G~~~-~e 183 (309)
+||+++++.+ ++|++|+++|+||+|.+. .+
T Consensus 297 ~A~~~a~~~~-~kPt~Iia~TikG~G~~~~~e 327 (386)
T cd02017 297 AAYKKAVEHK-GKPTVILAKTIKGYGLGAAGE 327 (386)
T ss_pred HHHHHHHhCC-CCCeEEEEeCeecCCCChhcc
Confidence 9999988643 679999999999999874 44
No 30
>PRK05261 putative phosphoketolase; Provisional
Probab=99.97 E-value=1.5e-29 Score=258.53 Aligned_cols=269 Identities=13% Similarity=0.109 Sum_probs=199.7
Q ss_pred cccC---CCCCCCCCC------CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccch---HHH
Q 041265 4 IRQT---CGLENVHDA------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARM---SYE 71 (309)
Q Consensus 4 ~r~~---~g~e~~~d~------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~---~~E 71 (309)
+||+ ||++||++. .++|++|+||+.|+ |+|+. +.+.+++|++||||.++|. .||
T Consensus 117 frqfs~pgg~~sH~~~~tPGi~~~~G~LG~gls~A~----------G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~ 182 (785)
T PRK05261 117 FKQFSFPGGIPSHAAPETPGSIHEGGELGYSLSHAY----------GAAFD----NPDLIVACVVGDGEAETGPLATSWH 182 (785)
T ss_pred HHhccCCCCcCCCCCCCCCCeeeCCCchhhHHHHHH----------HHHHc----CCCCEEEEEECcCchhhhhhHHHhh
Confidence 4554 566777764 89999999999999 99964 5678999999999999999 599
Q ss_pred HHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHH
Q 041265 72 AINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLED 150 (309)
Q Consensus 72 Aln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~ 150 (309)
+.++++..+ .+|+.|.++|+|++..+.. .. .. ..+++ ..+|++|||+++ .|||||+++
T Consensus 183 ~~~~~~~~~~g~vLPIld~Ng~~Is~pt~---~~---~~-----~~e~l---------~~rf~g~Gw~~i-~VDG~D~~a 241 (785)
T PRK05261 183 SNKFLNPATDGAVLPILHLNGYKIANPTI---LA---RI-----SDEEL---------EALFRGYGYEPY-FVEGDDPAD 241 (785)
T ss_pred hhhhcccccCCCEEEEEEecCCcCCCCcc---cc---cc-----CcHhH---------HHHHHHCCCeeE-EECCCCHHH
Confidence 999998888 6888777778887655443 00 00 01222 557999999999 899999999
Q ss_pred HHHH--------HH-------HhhcC-CCCCcE--EEEEEeeeccCCch------hh-----------------------
Q 041265 151 LAYV--------LK-------QVKAI-PDPGAV--LIHVITEKEKAMLP------LK----------------------- 183 (309)
Q Consensus 151 l~~a--------l~-------~a~~~-~~~~P~--~I~~~T~kg~G~~~------~e----------------------- 183 (309)
+.++ ++ +||+. ...+|+ +|+++|.||+|-+. .|
T Consensus 242 v~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~eGs~raHqvPL~~~~~~~~~~~~L 321 (785)
T PRK05261 242 MHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIEGSWRAHQVPLANVRDNPEHLDLL 321 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCccCCCCcccCCcccCCCchhhcCCCCCcccCHHHHHHH
Confidence 8877 33 34432 125799 99999999998442 22
Q ss_pred hhH---------------------------------------------------HH-----------------HHhhhc-
Q 041265 184 LQQ---------------------------------------------------TR-----------------LFCKIL- 194 (309)
Q Consensus 184 ~~~---------------------------------------------------~~-----------------~~~~~l- 194 (309)
..| .+ ++++.|
T Consensus 322 ~~wl~sy~p~elF~~~g~l~~~~~~l~p~g~~r~~~~P~ang~~~~~~l~lp~~~~~~~~~~~~g~~~~~atr~~g~~l~ 401 (785)
T PRK05261 322 EDWLRSYRPEELFDEDGRLKPELAALAPKGDRRMGANPHANGGLLLRDLRLPDFRDYAVPVGKPGAVMAEATRVLGKYLR 401 (785)
T ss_pred HHHhhcCChhhhcCCCCchhHHHHHhccCchhhhcCCchhcCCcCccccCCCchHhhcccccCCCccccccHHHHHHHHH
Confidence 011 00 011111
Q ss_pred -------------ccccCCCCCchhhhh-----------------hCCCceeeccchHHHHHHHHHHHhhCCCeeEEeec
Q 041265 195 -------------DNRMGGGTGLNLFQK-----------------HFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIY 244 (309)
Q Consensus 195 -------------d~dl~~~~~~~~~~~-----------------~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~ 244 (309)
.||...|.++....+ ...+|+++ +++|++|.|++.|+++.|.++++.+|
T Consensus 402 ~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~~~Gy~LtG~~~~~~sY 480 (785)
T PRK05261 402 DVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGWLEGYLLTGRHGFFSSY 480 (785)
T ss_pred HHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCCCCCeee-eecHHHHHHHHHHHHhcCCCcceecH
Confidence 277777777643322 12369999 99999999999999999999999999
Q ss_pred HHHH---HhHHHHH----HHhhh-hC---CCCeEEEEeCCCc-cCCCCCCCCC---hhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 245 SSFL---QRCFDQV----AHDVD-LQ---KLPVRFAIDRAGL-VGADGPTHCG---AFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 245 ~~F~---~ra~dqi----~~~~a-~~---~~pv~~~~~~~g~-~g~~G~tH~~---~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
-.|+ ..++.|+ |.... .. =.-+.++.++... .+++|.|||. ++.++-++. |+++|+.|+|+.|+
T Consensus 481 eaF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r~-~~~rV~rPaDaNe~ 559 (785)
T PRK05261 481 EAFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKP-DVIRVYLPPDANTL 559 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeEEeecceeecCCCCCCCCCchHHHHHHhcCC-CcceEEeCCCHHHH
Confidence 9997 7888887 53310 00 1233477787777 6899999999 999999999 99999999998774
No 31
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.96 E-value=2e-29 Score=216.88 Aligned_cols=113 Identities=23% Similarity=0.326 Sum_probs=100.1
Q ss_pred ccccCC---CC-CchhhhhhCCC-ceeeccchHHHHHHHHHHHhhCCCeeEEe-ecHHHHHhHHHHHHHhhhhC------
Q 041265 195 DNRMGG---GT-GLNLFQKHFPI-RCFDVGIAEQHAVTFAAGLAAEGLKPFCA-IYSSFLQRCFDQVAHDVDLQ------ 262 (309)
Q Consensus 195 d~dl~~---~~-~~~~~~~~~p~-r~~~~gIaE~~~vg~a~GlA~~G~~pi~~-~~~~F~~ra~dqi~~~~a~~------ 262 (309)
++|+.. ++ .+++|+++||+ ||||+||+||+|+|+|+|||+.|++||++ +|++|+.|++|||+++++++
T Consensus 21 ~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl~ra~dQi~~~~a~~~~~~~~ 100 (167)
T cd07036 21 GEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGG 100 (167)
T ss_pred CcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 467643 23 35899999999 99999999999999999999999999998 79999999999999999976
Q ss_pred --CCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 263 --KLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 263 --~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
++||+++++++|. +.+|+|| +.+|+++|++||||+|++|+|+.|+
T Consensus 101 ~~~~pv~i~~~~gg~-~~~G~th-s~~~~a~lr~iPg~~V~~Psd~~e~ 147 (167)
T cd07036 101 QFKVPIVIRGPNGGG-IGGGAQH-SQSLEAWFAHIPGLKVVAPSTPYDA 147 (167)
T ss_pred CccCCEEEEEeCCCC-CCcChhh-hhhHHHHHhcCCCCEEEeeCCHHHH
Confidence 4999999987775 5678885 6889999999999999999999763
No 32
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.95 E-value=8.7e-28 Score=220.14 Aligned_cols=150 Identities=23% Similarity=0.276 Sum_probs=125.2
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHH
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEA 72 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EA 72 (309)
|++||+.|+. +++++. +++|++|+|||+|+ |+|++.++.+.+.+|||++|||+++||.+||+
T Consensus 78 l~~~~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~av----------G~Ala~~~~~~~~~v~~i~GDG~~~~G~~~ea 147 (255)
T cd02012 78 LKTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAV----------GMALAEKLLGFDYRVYVLLGDGELQEGSVWEA 147 (255)
T ss_pred HHHhcccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHH----------HHHHHHHHhCCCCEEEEEECcccccccHHHHH
Confidence 3578999974 555553 78999999999999 99999999999999999999999999999999
Q ss_pred HHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHH
Q 041265 73 INNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDL 151 (309)
Q Consensus 73 ln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l 151 (309)
++.|+.++ +||++|.+||+|++..+.. ... . ..++..++++|||+++ +|||||+++|
T Consensus 148 l~~a~~~~l~~li~vvdnN~~~~~~~~~-------~~~-----~---------~~~~~~~~~a~G~~~~-~v~G~d~~~l 205 (255)
T cd02012 148 ASFAGHYKLDNLIAIVDSNRIQIDGPTD-------DIL-----F---------TEDLAKKFEAFGWNVI-EVDGHDVEEI 205 (255)
T ss_pred HHHHHHcCCCcEEEEEECCCccccCcHh-------hcc-----C---------chhHHHHHHHcCCeEE-EECCCCHHHH
Confidence 99999999 5799999999886533221 000 0 1223567999999999 8999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeeeccCCchhh
Q 041265 152 AYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK 183 (309)
Q Consensus 152 ~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e 183 (309)
.++++++++.. ++|++|+++|.||+|++..|
T Consensus 206 ~~al~~a~~~~-~~P~~I~~~t~kg~g~~~~e 236 (255)
T cd02012 206 LAALEEAKKSK-GKPTLIIAKTIKGKGVPFME 236 (255)
T ss_pred HHHHHHHHHcC-CCCEEEEEEeecccccCccC
Confidence 99999988642 67999999999999998665
No 33
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=99.95 E-value=8.8e-28 Score=229.45 Aligned_cols=124 Identities=19% Similarity=0.330 Sum_probs=105.3
Q ss_pred hhHHHHHhhhc-------------ccccCCCCC----chhhhhhC-CCceeeccchHHHHHHHHHHHhhCCCeeEEee-c
Q 041265 184 LQQTRLFCKIL-------------DNRMGGGTG----LNLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAI-Y 244 (309)
Q Consensus 184 ~~~~~~~~~~l-------------d~dl~~~~~----~~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~-~ 244 (309)
.+|+++|+++| ++|++.+.+ +++|.++| |+||||+||+||+|||+|+|||+.|++||+++ +
T Consensus 27 ~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~~~ 106 (356)
T PLN02683 27 MTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFMT 106 (356)
T ss_pred cHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEEeh
Confidence 45666666665 366654333 47888888 99999999999999999999999999999987 5
Q ss_pred HHHHHhHHHHHHHhhhhCC--------CCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 245 SSFLQRCFDQVAHDVDLQK--------LPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 245 ~~F~~ra~dqi~~~~a~~~--------~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
++|++|++|||++++++++ +||++++++++..| +|+|||..+ +++||++|||+|++|+|+.|+
T Consensus 107 ~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g-~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~ 177 (356)
T PLN02683 107 FNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAG-VGAQHSQCF-AAWYSSVPGLKVLAPYSSEDA 177 (356)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCC-CCCccccCH-HHHHhcCCCCEEEEeCCHHHH
Confidence 7788999999999999887 99999998854456 599997776 799999999999999999874
No 34
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=99.95 E-value=8.2e-28 Score=227.57 Aligned_cols=123 Identities=20% Similarity=0.331 Sum_probs=102.3
Q ss_pred hHHHHHhhhc-------------ccccCCCCC----chhhhhhC-CCceeeccchHHHHHHHHHHHhhCCCeeEEeecH-
Q 041265 185 QQTRLFCKIL-------------DNRMGGGTG----LNLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYS- 245 (309)
Q Consensus 185 ~~~~~~~~~l-------------d~dl~~~~~----~~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~- 245 (309)
+|+++|+++| ++|++.+.+ +++|+++| |+||||+||+||+|||+|+|||+.|++||+++|+
T Consensus 5 ~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~~~ 84 (327)
T PRK09212 5 TVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFMTF 84 (327)
T ss_pred hHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEeehh
Confidence 5667777766 367655444 38999999 9999999999999999999999999999999876
Q ss_pred HHHHhHHHHHHHhhhhC--------CCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 246 SFLQRCFDQVAHDVDLQ--------KLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 246 ~F~~ra~dqi~~~~a~~--------~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
+|++||+|||+++++++ ++|++++++. |..+.+|+|||...+ ++||++|||+|++|+|+.|+
T Consensus 85 ~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~-g~~~~~G~tH~~~~e-a~~r~iP~l~V~~P~d~~e~ 154 (327)
T PRK09212 85 NFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPN-GAAARVAAQHSQCYA-AWYSHIPGLKVVAPYFAADC 154 (327)
T ss_pred hHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCC-CCCCCCCcccccCHH-HHHhcCCCCEEEeeCCHHHH
Confidence 67899999999999988 4677666654 345678999944434 99999999999999999874
No 35
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=99.95 E-value=1.2e-27 Score=226.30 Aligned_cols=121 Identities=19% Similarity=0.274 Sum_probs=99.7
Q ss_pred hHHHHHhhhc-------------ccccCCCCC----chhhhhhCCC-ceeeccchHHHHHHHHHHHhhCCCeeEEee-cH
Q 041265 185 QQTRLFCKIL-------------DNRMGGGTG----LNLFQKHFPI-RCFDVGIAEQHAVTFAAGLAAEGLKPFCAI-YS 245 (309)
Q Consensus 185 ~~~~~~~~~l-------------d~dl~~~~~----~~~~~~~~p~-r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~-~~ 245 (309)
+++++|+++| ++|++...+ +++|+++||+ ||||+||+||+|||+|+|||+.|++||+++ |+
T Consensus 5 ~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~~~ 84 (327)
T CHL00144 5 FLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGMNM 84 (327)
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEeehh
Confidence 4566666666 477753333 5899999998 999999999999999999999999999985 66
Q ss_pred HHHHhHHHHHHHhhhhC--------CCCeEEEEeCCCcc-CCCCCCC-CChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 246 SFLQRCFDQVAHDVDLQ--------KLPVRFAIDRAGLV-GADGPTH-CGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 246 ~F~~ra~dqi~~~~a~~--------~~pv~~~~~~~g~~-g~~G~tH-~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
+|++|++|||+|++|++ ++||+++. +|.. +.+|+|| |+.+ ++|++||||+|++|+|+.|+
T Consensus 85 ~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~--~g~~~~~~G~tHs~~~e--a~~~~iPgl~V~~Psd~~d~ 154 (327)
T CHL00144 85 GFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRG--PGGVGRQLGAEHSQRLE--SYFQSVPGLQIVACSTPYNA 154 (327)
T ss_pred hHHHHHHHHHHHHHHHHhhccCCCccCCEEEEe--cCCCCCCCCccccccHH--HHHhcCCCCEEEEeCCHHHH
Confidence 77899999999999987 56666664 4443 4689999 6664 99999999999999999763
No 36
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.94 E-value=2.4e-27 Score=232.89 Aligned_cols=124 Identities=15% Similarity=0.209 Sum_probs=109.9
Q ss_pred hhHHHHHhhhc-------------ccccCCCCC----chhhhhhC-CCceeeccchHHHHHHHHHHHhhCCCeeEEee-c
Q 041265 184 LQQTRLFCKIL-------------DNRMGGGTG----LNLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAI-Y 244 (309)
Q Consensus 184 ~~~~~~~~~~l-------------d~dl~~~~~----~~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~-~ 244 (309)
.+++++|+++| ++|++...+ +++|.++| |+||||+||+||+|+|+|+|||+.|+|||+++ +
T Consensus 142 ~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~~~ 221 (464)
T PRK11892 142 MTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEFMT 221 (464)
T ss_pred hHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEEeh
Confidence 57888888887 367655444 47899999 99999999999999999999999999999986 4
Q ss_pred HHHHHhHHHHHHHhhh--------hCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 245 SSFLQRCFDQVAHDVD--------LQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 245 ~~F~~ra~dqi~~~~a--------~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
+.|++|++|||+|+++ ++++||+|++.+++..+ .|+ ||+++|+++|+++|||+|++|+|+.|+
T Consensus 222 ~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~ 292 (464)
T PRK11892 222 FNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADA 292 (464)
T ss_pred HHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHH
Confidence 6778999999999999 88999999999887755 677 999999999999999999999998763
No 37
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=99.94 E-value=6.9e-27 Score=223.23 Aligned_cols=111 Identities=25% Similarity=0.421 Sum_probs=94.1
Q ss_pred cccC---CCCC-chhhhhhC-CCceeeccchHHHHHHHHHHHhhCCCeeEEee-cHHHHHhHHHHHHHhhhhC-------
Q 041265 196 NRMG---GGTG-LNLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAI-YSSFLQRCFDQVAHDVDLQ------- 262 (309)
Q Consensus 196 ~dl~---~~~~-~~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~-~~~F~~ra~dqi~~~~a~~------- 262 (309)
+|++ +.++ +++|+++| |+||||+||+||+|+|+|+|||+.|++||+++ |++|++|++|||+++++++
T Consensus 60 ~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~ 139 (355)
T PTZ00182 60 EDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAEFMFADFIFPAFDQIVNEAAKYRYMSGGQ 139 (355)
T ss_pred CCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEEechhhHHHHHHHHHHHHHHHhhcccCCC
Confidence 4554 4454 58999999 99999999999999999999999999999986 8999999999999999985
Q ss_pred -CCCeEEEEeCCCccCCCCCCC-CChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 263 -KLPVRFAIDRAGLVGADGPTH-CGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 263 -~~pv~~~~~~~g~~g~~G~tH-~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
++|++++.+ +|..+.+|+|| |+. + ++|+++|||+|++|+|+.|+
T Consensus 140 ~~v~vv~~~~-~g~~g~~G~tHs~~~-e-a~lr~iPn~~V~~Psd~~e~ 185 (355)
T PTZ00182 140 FDCPIVIRGP-NGAVGHGGAYHSQSF-E-AYFAHVPGLKVVAPSDPEDA 185 (355)
T ss_pred ccCCEEEEeC-CCCCCCCCCcccchH-H-HHHhcCCCCEEEeeCCHHHH
Confidence 466665543 33367899999 544 3 99999999999999998763
No 38
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.93 E-value=3e-27 Score=205.51 Aligned_cols=123 Identities=37% Similarity=0.542 Sum_probs=102.6
Q ss_pred hHHHHHhhhc-------------ccccCCCCCchhhhhhC---CCceeeccchHHHHHHHHHHHhhCC--CeeEEeecHH
Q 041265 185 QQTRLFCKIL-------------DNRMGGGTGLNLFQKHF---PIRCFDVGIAEQHAVTFAAGLAAEG--LKPFCAIYSS 246 (309)
Q Consensus 185 ~~~~~~~~~l-------------d~dl~~~~~~~~~~~~~---p~r~~~~gIaE~~~vg~a~GlA~~G--~~pi~~~~~~ 246 (309)
+|+++|+++| ++|++++++...+.+.+ |+|++|+||+|++|+|+|+|||+.| ++||+.+|++
T Consensus 4 ~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f~~ 83 (178)
T PF02779_consen 4 SMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVESTFAD 83 (178)
T ss_dssp EHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEEGG
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEeeccc
Confidence 5677777777 48888777665554444 5599999999999999999999999 6677789999
Q ss_pred HHH----hHHHHHHHhhhhCCCCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCC
Q 041265 247 FLQ----RCFDQVAHDVDLQKLPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVL 308 (309)
Q Consensus 247 F~~----ra~dqi~~~~a~~~~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e 308 (309)
|+. |+++|+++++++++.||+ ++.++|+ .+.+|+|||+.+|+++|+++||++|++|+|+.|
T Consensus 84 F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e 149 (178)
T PF02779_consen 84 FLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAE 149 (178)
T ss_dssp GGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHH
T ss_pred cccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHH
Confidence 998 999999999999999999 7778888 688999999999999999999999999999876
No 39
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.93 E-value=3e-25 Score=219.18 Aligned_cols=276 Identities=19% Similarity=0.169 Sum_probs=198.4
Q ss_pred CCcccCCC---CCCCCCC--------CCcCCchhhHhhHhhcccccccchhhHhHhHhc-------CCCCeEEEEEeCCc
Q 041265 2 RTIRQTCG---LENVHDA--------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLL-------GKNNHVISVIVEGA 63 (309)
Q Consensus 2 ~~~r~~~g---~e~~~d~--------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~-------~~~~~v~~~~GDG~ 63 (309)
.+|||..+ ++|-|.+ |+|+++|-|.-.|+ =-|.-.|+. .++.+|+||+||||
T Consensus 163 dnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~ai----------yqArf~kYL~~RGl~~~~~~~v~afLGDgE 232 (887)
T COG2609 163 DNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAI----------YQARFLKYLEARGLKDTSDQKVWAFLGDGE 232 (887)
T ss_pred HHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHH----------HHHHHHHHHHhcCCcCCCCCeEEEEecCcc
Confidence 46776654 7444333 99999988887776 334444443 24678999999999
Q ss_pred cccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe-
Q 041265 64 TIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG- 141 (309)
Q Consensus 64 l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~- 141 (309)
+.|+.+.||+..|+..+ +||+||++.|. + ..++++.....+... +.++|++.||+|+.
T Consensus 233 mDEpes~gAi~~A~re~LdNlifVincNl-Q--------------rLDgpVrgngkiiqe-----lE~~FrgAGW~Vikv 292 (887)
T COG2609 233 MDEPESRGAITEAAREKLDNLIFVINCNL-Q--------------RLDGPVRGNGKIIQE-----LEGIFRGAGWNVIKV 292 (887)
T ss_pred cCCchhhHHHHHHHHhcCCceEEEEecch-h--------------hcCCcccCCchhHHH-----HHHHhccCCceEEEE
Confidence 99999999999999999 89999988872 2 222222111111111 12233444444330
Q ss_pred -------------------------------------------------------------------cCCCCCHHHHHHH
Q 041265 142 -------------------------------------------------------------------PVDGHNLEDLAYV 154 (309)
Q Consensus 142 -------------------------------------------------------------------~vDG~D~~~l~~a 154 (309)
.--|||+++|++|
T Consensus 293 iWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA 372 (887)
T COG2609 293 IWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAA 372 (887)
T ss_pred EecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHH
Confidence 1248999999999
Q ss_pred HHHhhcCCCCCcEEEEEEeeeccCCchh-h--------------------------------------------------
Q 041265 155 LKQVKAIPDPGAVLIHVITEKEKAMLPL-K-------------------------------------------------- 183 (309)
Q Consensus 155 l~~a~~~~~~~P~~I~~~T~kg~G~~~~-e-------------------------------------------------- 183 (309)
++++++.+ ++|++|.++|+||.|.... |
T Consensus 373 ~~~A~~~k-g~PtvilA~TIKGyglg~~~eg~n~aHq~kkm~~~~l~~~Rdr~~ipvsd~e~e~lpy~~~g~~s~E~~yl 451 (887)
T COG2609 373 FKKAQEHK-GRPTVILAKTIKGYGLGEAAEGKNIAHQVKKMTPDQLKEFRDRFGIPVSDAELEELPYYHFGEDSPEYKYL 451 (887)
T ss_pred HHHHhcCC-CCceEEEEeeeccccCchhhcccchhhhhhcCCHHHHHHHHhhcCCCCchhhhhcCCcCCCCCCcHHHHHH
Confidence 99999873 4799999999999997632 1
Q ss_pred ------------------------h----------------hHHHHHhhhc----------------ccccCCCCCchhh
Q 041265 184 ------------------------L----------------QQTRLFCKIL----------------DNRMGGGTGLNLF 207 (309)
Q Consensus 184 ------------------------~----------------~~~~~~~~~l----------------d~dl~~~~~~~~~ 207 (309)
| +.+.+|.+.| .||-..+||++++
T Consensus 452 ~~rr~al~g~~p~rr~~~t~~l~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfgmeg~ 531 (887)
T COG2609 452 HARRAALGGYLPARRPKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGMEGL 531 (887)
T ss_pred HHHHHhcCCCCchhcccCCCCccCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCccccccCchhhhccchhh
Confidence 0 1122444443 2788888888765
Q ss_pred hhh----------C---------------CCceeeccchHHHHHH--HHHHHhhC--C--CeeEEeecHHH-HHhHHHHH
Q 041265 208 QKH----------F---------------PIRCFDVGIAEQHAVT--FAAGLAAE--G--LKPFCAIYSSF-LQRCFDQV 255 (309)
Q Consensus 208 ~~~----------~---------------p~r~~~~gIaE~~~vg--~a~GlA~~--G--~~pi~~~~~~F-~~ra~dqi 255 (309)
..+ | .+++++-||+|.+.++ +|+|.+.. | ++||+.-|++| ++|..|.+
T Consensus 532 f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~~ 611 (887)
T COG2609 532 FRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDLL 611 (887)
T ss_pred hhhcccccCCCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeeeeeechhhhhhHHHHH
Confidence 221 2 2467899999999998 77887763 3 78998889999 89999999
Q ss_pred HHhhhhCCCCeEEEEeCCCc-c-CCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 256 AHDVDLQKLPVRFAIDRAGL-V-GADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 256 ~~~~a~~~~pv~~~~~~~g~-~-g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
|.. |.|.+.-.+++..+|. + ..+|.+|++....-+-.++||+..+.|+-++|+
T Consensus 612 waA-~dq~ARgFLlgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEv 666 (887)
T COG2609 612 WAA-GDQDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEV 666 (887)
T ss_pred HHH-HhhhhcceeEeecCCCceeCccccccccccchhhhhcCCCccccCchHHHHH
Confidence 886 7998886677766666 2 447999999988888999999999999999885
No 40
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.92 E-value=2.3e-25 Score=191.60 Aligned_cols=113 Identities=39% Similarity=0.616 Sum_probs=94.2
Q ss_pred ccccCCCCCchhhhhhCCCc-------eeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeE
Q 041265 195 DNRMGGGTGLNLFQKHFPIR-------CFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVR 267 (309)
Q Consensus 195 d~dl~~~~~~~~~~~~~p~r-------~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~ 267 (309)
++|+..++++.. .+.||+| ++|+||+|++|+++|+|||+.|++||+++|+.|+.|+++|+++++++++.|++
T Consensus 25 ~~D~~~~~~~~~-~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~f~~~a~~~~~~~~~~~~~~~v 103 (168)
T smart00861 25 GADVGGSTGLDR-GGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRPVVAIFFTFFDRAKDQIRSDGAMGRVPVV 103 (168)
T ss_pred ehhhCcCcCCCc-CCccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCcEEEeeHHHHHHHHHHHHHhCcccCCCEE
Confidence 467766665542 4556655 99999999999999999999999999999999999999999999776645554
Q ss_pred EEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 268 FAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 268 ~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
+... +|. .|.+|+|||+.+|+++|+++||++|++|+|+.|+
T Consensus 104 ~~~~-~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~ 145 (168)
T smart00861 104 VRHD-SGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEA 145 (168)
T ss_pred EEec-CccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHH
Confidence 4432 344 6778999999999999999999999999999874
No 41
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.92 E-value=8.6e-25 Score=206.20 Aligned_cols=133 Identities=21% Similarity=0.199 Sum_probs=106.9
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCC-eEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNN-HVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~-~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~ 95 (309)
-.+|..|+++|.|+ |+|+|.|+++++. +++|++|||+.++|.|||+||+|+.|++|++|+++||+|+++
T Consensus 133 ~~~~iVg~Q~~~Aa----------G~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiS 202 (358)
T COG1071 133 GGSGIVGTQIPLAA----------GAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAIS 202 (358)
T ss_pred CCCceecccccHHH----------HHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceee
Confidence 44556666666666 9999999999555 999999999999999999999999999999999999999887
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHh----hcCCCCCcEEEEE
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQV----KAIPDPGAVLIHV 171 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a----~~~~~~~P~~I~~ 171 (309)
.+.. .|.. .+.. ..+..+||+..+ .|||||+.+++++.++| |++ ++|++||+
T Consensus 203 vp~~-------~q~~------~~~~--------~~ra~aygipgv-~VDG~D~~avy~~~~~A~e~AR~g--~GPtLIE~ 258 (358)
T COG1071 203 VPRS-------RQTA------AEII--------AARAAAYGIPGV-RVDGNDVLAVYEAAKEAVERARAG--EGPTLIEA 258 (358)
T ss_pred cchh-------hccc------chhH--------HhhhhccCCCeE-EECCcCHHHHHHHHHHHHHHHHcC--CCCEEEEE
Confidence 5443 1111 1111 224688999999 89999999999888754 554 89999999
Q ss_pred EeeeccCCchhh
Q 041265 172 ITEKEKAMLPLK 183 (309)
Q Consensus 172 ~T~kg~G~~~~e 183 (309)
.|+|..|+...+
T Consensus 259 ~tYR~~~HS~sD 270 (358)
T COG1071 259 VTYRYGGHSTSD 270 (358)
T ss_pred EEeecCCCCCCC
Confidence 999988877654
No 42
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=99.91 E-value=1.1e-24 Score=199.07 Aligned_cols=136 Identities=21% Similarity=0.325 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhhhhHHHHHhhhcccccCCCCCc-hhhhhhC-CCceeeccchHHHH
Q 041265 148 LEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLKLQQTRLFCKILDNRMGGGTGL-NLFQKHF-PIRCFDVGIAEQHA 225 (309)
Q Consensus 148 ~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e~~~~~~~~~~ld~dl~~~~~~-~~~~~~~-p~r~~~~gIaE~~~ 225 (309)
+++|.+|+++..+. +.-++| |++.. +..+|.|+. ++|+++| ++|++||||+|+++
T Consensus 5 ~eAi~~Am~~eM~r--D~~V~v--------------------~GEDV-g~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi 61 (324)
T COG0022 5 IEAINEAMDEEMER--DERVVV--------------------LGEDV-GVYGGVFRVTKGLQEKFGEERVIDTPIAESGI 61 (324)
T ss_pred HHHHHHHHHHHHhc--CCCEEE--------------------Ecccc-cccCChhhhchhHHHHhCccceecCccchhhh
Confidence 46677777655543 433444 44444 567888886 9999999 67999999999999
Q ss_pred HHHHHHHhhCCCeeEEe-ecHHHHHhHHHHHHHhhhhC--------CCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCC
Q 041265 226 VTFAAGLAAEGLKPFCA-IYSSFLQRCFDQVAHDVDLQ--------KLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLP 296 (309)
Q Consensus 226 vg~a~GlA~~G~~pi~~-~~~~F~~ra~dqi~~~~a~~--------~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP 296 (309)
+|+|+|||+.|+|||++ +|.+|++.++|||.|++++. .+|+++|++.+|..+ ++.|||+.-+++|.|+|
T Consensus 62 ~G~avGaA~~GlrPivEiqf~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~--~~~~HSqs~ea~f~h~P 139 (324)
T COG0022 62 AGIAVGAALTGLRPIVEIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIG--GGAQHSQSLEALFAHIP 139 (324)
T ss_pred HHHHHHHHHcCCcceEEEEecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCC--chhhccCCHHHHHhcCC
Confidence 99999999999999997 69999999999999998853 689999998776644 45566777779999999
Q ss_pred CcEEEEeCCCCC
Q 041265 297 NMVVMKDIKLVL 308 (309)
Q Consensus 297 ~~~v~~Ps~~~e 308 (309)
|+||++||||+.
T Consensus 140 GlKVV~PStpyD 151 (324)
T COG0022 140 GLKVVMPSTPYD 151 (324)
T ss_pred CceEEecCChHH
Confidence 999999999973
No 43
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.90 E-value=9.4e-24 Score=197.71 Aligned_cols=133 Identities=21% Similarity=0.200 Sum_probs=110.0
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLC 96 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~ 96 (309)
..++++|..+|+++ |+|+|.|+++++.+++|++|||++++|.+|||||+|+.|+.|+++|++||+|+.++
T Consensus 98 ~~~~~vg~~~p~a~----------G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist 167 (300)
T PF00676_consen 98 GASSPVGAQVPIAA----------GVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAIST 167 (300)
T ss_dssp EEESSTTTHHHHHH----------HHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTE
T ss_pred eccccccccCcccc----------chhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCccccc
Confidence 46899999999999 99999999999999999999999999999999999999999999999999998887
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHH----hhcCCCCCcEEEEEE
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQ----VKAIPDPGAVLIHVI 172 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~----a~~~~~~~P~~I~~~ 172 (309)
+.. .+... +....+.+++|+..+ .|||+|++++++++++ +|+. ++|++||++
T Consensus 168 ~~~-------~~~~~--------------~~~~~~a~~~gip~~-~VDG~D~~av~~a~~~A~~~~R~g--~gP~lie~~ 223 (300)
T PF00676_consen 168 PTE-------EQTAS--------------PDIADRAKGYGIPGI-RVDGNDVEAVYEAAKEAVEYARAG--KGPVLIEAV 223 (300)
T ss_dssp EHH-------HHCSS--------------STSGGGGGGTTSEEE-EEETTSHHHHHHHHHHHHHHHHTT--T--EEEEEE
T ss_pred Ccc-------ccccc--------------cchhhhhhccCCcEE-EECCEeHHHHHHHHHHHHHHHhcC--CCCEEEEEe
Confidence 665 12211 112446789999999 9999999999987764 4555 899999999
Q ss_pred eeeccCCchhh
Q 041265 173 TEKEKAMLPLK 183 (309)
Q Consensus 173 T~kg~G~~~~e 183 (309)
|+|-.|+...+
T Consensus 224 tyR~~gHs~~D 234 (300)
T PF00676_consen 224 TYRLRGHSESD 234 (300)
T ss_dssp E--SS-SSTTS
T ss_pred eccCCCCCCCC
Confidence 99998877655
No 44
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.89 E-value=3.1e-23 Score=198.20 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=108.6
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLC 96 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~ 96 (309)
-.+|++|+++|+|+ |+|+|.|+++.+.+++|++|||+++||.+|||||+|+.|++|+++|++||+|+.++
T Consensus 135 ~~~~~vG~~~p~A~----------G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~aist 204 (362)
T PLN02269 135 GGHGIVGAQVPLGA----------GLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYGMGT 204 (362)
T ss_pred ccCchhhccccHHH----------HHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCEeccC
Confidence 67899999999999 99999999999999999999999999999999999999999999999999998766
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEee
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI--PDPGAVLIHVITE 174 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~--~~~~P~~I~~~T~ 174 (309)
+.. .+.. ...+.+ +++++..+ .|||||+++++++++.+.+. . ++|++|+++|+
T Consensus 205 ~~~-------~~~~-----~~~~~~-----------~~~~~p~~-~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~ty 259 (362)
T PLN02269 205 AEW-------RAAK-----SPAYYK-----------RGDYVPGL-KVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTY 259 (362)
T ss_pred chh-------hhcc-----chHHHH-----------hhcCCCeE-EECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecC
Confidence 543 1110 111211 33466677 89999999999999876432 3 67999999999
Q ss_pred eccCCchhh
Q 041265 175 KEKAMLPLK 183 (309)
Q Consensus 175 kg~G~~~~e 183 (309)
|..|+...+
T Consensus 260 R~~gHs~~D 268 (362)
T PLN02269 260 RYHGHSMSD 268 (362)
T ss_pred cCCCcCCCC
Confidence 998876554
No 45
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.87 E-value=6.4e-22 Score=192.81 Aligned_cols=133 Identities=13% Similarity=0.104 Sum_probs=109.3
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCC-------CCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeC
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGK-------NNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSN 89 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~-------~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~n 89 (309)
-..|++|.++|.|+ |+|+|.|+++. +.+|+|++|||++++|++||+||+|+.|+.|+++|++|
T Consensus 191 g~~g~lG~~lP~Av----------GaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~N 260 (433)
T PLN02374 191 GGFAFIGEGIPVAT----------GAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVEN 260 (433)
T ss_pred CCceeccCchhHHH----------HHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeC
Confidence 45689999999999 99999999863 78899999999999999999999999999999999999
Q ss_pred cchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHH----HHHhhcCCCCC
Q 041265 90 PQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYV----LKQVKAIPDPG 165 (309)
Q Consensus 90 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~a----l~~a~~~~~~~ 165 (309)
|+|+..++.. .+.. .++...++++|||..+ .|||+|+.+++++ ++++++. ++
T Consensus 261 N~yaig~~~~-------~~t~--------------~~dia~~A~a~G~~~~-~VDG~D~~av~~a~~~A~~~Ar~g--~g 316 (433)
T PLN02374 261 NLWAIGMSHL-------RATS--------------DPEIWKKGPAFGMPGV-HVDGMDVLKVREVAKEAIERARRG--EG 316 (433)
T ss_pred CCEeecceee-------eccC--------------CCCHHHHHHhcCCcEE-EECCCCHHHHHHHHHHHHHHHHHc--CC
Confidence 9986544332 1110 1122456799999999 9999999988854 5566665 88
Q ss_pred cEEEEEEeeeccCCchhh
Q 041265 166 AVLIHVITEKEKAMLPLK 183 (309)
Q Consensus 166 P~~I~~~T~kg~G~~~~e 183 (309)
|++|+++|+|.+|+...+
T Consensus 317 P~LIe~~tyR~~GHs~~D 334 (433)
T PLN02374 317 PTLVECETYRFRGHSLAD 334 (433)
T ss_pred CEEEEEEEEecCCcCCCC
Confidence 999999999999977654
No 46
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.86 E-value=1.5e-21 Score=185.62 Aligned_cols=133 Identities=18% Similarity=0.111 Sum_probs=109.2
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcC-------CCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeC
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLG-------KNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSN 89 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~-------~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~n 89 (309)
-+.|++|.++|.|+ |+|+|.|+++ .+.+|+|++|||++++|++||+||+|+.++.|+++|++|
T Consensus 125 ~~~g~lG~~lp~Av----------Gaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~N 194 (341)
T CHL00149 125 GGFAFIGEGIPIAL----------GAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVEN 194 (341)
T ss_pred CCChhhhccHHHHH----------HHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEe
Confidence 45699999999999 9999999987 478899999999999999999999999999999999999
Q ss_pred cchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHH----HHhhcCCCCC
Q 041265 90 PQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVL----KQVKAIPDPG 165 (309)
Q Consensus 90 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al----~~a~~~~~~~ 165 (309)
|+|+..++.. .+.. .+++..+.++||+..+ .|||+|+.++++++ +++++. ++
T Consensus 195 N~~~i~~~~~-------~~~~--------------~~d~a~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~ar~~--~g 250 (341)
T CHL00149 195 NQWAIGMAHH-------RSTS--------------IPEIHKKAEAFGLPGI-EVDGMDVLAVREVAKEAVERARQG--DG 250 (341)
T ss_pred CCeeeecchh-------heeC--------------CccHHHHHHhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHhC--CC
Confidence 9986654432 0110 1223456799999999 99999998877544 556665 88
Q ss_pred cEEEEEEeeeccCCchhh
Q 041265 166 AVLIHVITEKEKAMLPLK 183 (309)
Q Consensus 166 P~~I~~~T~kg~G~~~~e 183 (309)
|++|+++|+|..|+...+
T Consensus 251 P~lIev~tyR~~gHs~~D 268 (341)
T CHL00149 251 PTLIEALTYRFRGHSLAD 268 (341)
T ss_pred CEEEEEEEecCCCcCCCC
Confidence 999999999998877654
No 47
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.85 E-value=1.5e-21 Score=178.45 Aligned_cols=133 Identities=12% Similarity=0.073 Sum_probs=109.8
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcC-----CCCeEEEEEeCCcc-ccchHHHHHHHHhhccCc---EEEEE
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLG-----KNNHVISVIVEGAT-IARMSYEAINNAGVLNKA---LKRLH 87 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~-----~~~~v~~~~GDG~l-~eG~~~EAln~A~~~~~~---Li~i~ 87 (309)
...+|+|..+|+|+ |.|+|.|+++ ++..++|++|||++ ++|.+||+||+|+.++.| +++|+
T Consensus 110 ~npS~l~~~~pva~----------G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvv 179 (265)
T cd02016 110 PNPSHLEAVNPVVM----------GKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIV 179 (265)
T ss_pred CCCcccccccCeeh----------hHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEE
Confidence 45678999999999 9999999998 36789999999996 699999999999999987 99999
Q ss_pred eCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHh----hcCCC
Q 041265 88 SNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQV----KAIPD 163 (309)
Q Consensus 88 ~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a----~~~~~ 163 (309)
+||+|+..++.. .+... . ...++.+++|++.+ .|||+|+++++++++++ ++.
T Consensus 180 eNNq~g~sT~~~-------~~~~~-----~---------~~~~~a~~~gip~~-~VdG~D~~aV~~a~~~A~~~~r~g-- 235 (265)
T cd02016 180 VNNQIGFTTDPR-------DSRSS-----P---------YCTDVAKMIGAPIF-HVNGDDPEAVVRATRLALEYRQKF-- 235 (265)
T ss_pred EeCCEEEEecHH-------Hhccc-----c---------cHHHHHeecCCCEE-EEcCCCHHHHHHHHHHHHHHHHhc--
Confidence 999998877654 11110 1 11345789999999 99999999999888754 444
Q ss_pred CCcEEEEEEeeeccCCchhh
Q 041265 164 PGAVLIHVITEKEKAMLPLK 183 (309)
Q Consensus 164 ~~P~~I~~~T~kg~G~~~~e 183 (309)
++|++||++|+|-.|+...+
T Consensus 236 ~gp~lIe~~tYR~~GHse~D 255 (265)
T cd02016 236 KKDVVIDLVCYRRHGHNELD 255 (265)
T ss_pred CCCEEEEEEEecCCCCCCcC
Confidence 88999999999999986544
No 48
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=99.85 E-value=2e-21 Score=178.45 Aligned_cols=133 Identities=16% Similarity=0.164 Sum_probs=110.3
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLC 96 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~ 96 (309)
-+.|.+|.++|.+. |+|+|.|+++++.+++++.|||+.++|++|||+|+|..|++|+||||+||.|++-+
T Consensus 162 GGnGIVGAQiPLGa----------Gia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMGT 231 (394)
T KOG0225|consen 162 GGNGIVGAQIPLGA----------GIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGT 231 (394)
T ss_pred CccceeccCCCccc----------cHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCccCc
Confidence 57899999999999 99999999999999999999999999999999999999999999999999998776
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEee
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI--PDPGAVLIHVITE 174 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~--~~~~P~~I~~~T~ 174 (309)
... +. ....++.+ ++-=++-+ .|||+|+.++.+|.+.+++. +++||+++|..|+
T Consensus 232 s~~---Ra---------sa~teyyk-----------RG~yiPGl-~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TY 287 (394)
T KOG0225|consen 232 SAE---RA---------SASTEYYK-----------RGDYIPGL-KVDGMDVLAVREATKFAKKYALEGKGPILMEMDTY 287 (394)
T ss_pred chh---hh---------hcChHHHh-----------ccCCCCce-EECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeee
Confidence 554 10 00123322 11114445 68999999999999977653 4589999999999
Q ss_pred eccCCchhh
Q 041265 175 KEKAMLPLK 183 (309)
Q Consensus 175 kg~G~~~~e 183 (309)
|.+|++.++
T Consensus 288 Ry~GHSmSD 296 (394)
T KOG0225|consen 288 RYHGHSMSD 296 (394)
T ss_pred eecccccCC
Confidence 999988766
No 49
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.85 E-value=6.4e-21 Score=178.13 Aligned_cols=131 Identities=20% Similarity=0.156 Sum_probs=111.7
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLC 96 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~ 96 (309)
.++|++|.++|+|+ |+|+|.|+.+++.+++|++|||++++|.+||+||+|+.++.|+++|++||+|+.++
T Consensus 101 ~~~g~lG~~~p~a~----------G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i~~ 170 (293)
T cd02000 101 GGNGIVGGQVPLAA----------GAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAIST 170 (293)
T ss_pred ccccccccchhHHH----------HHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeeccC
Confidence 88999999999999 99999999999999999999999999999999999999999999999999997665
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhh----cCCCCCcEEEEEE
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVK----AIPDPGAVLIHVI 172 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~----~~~~~~P~~I~~~ 172 (309)
+.. .+.+ .++...+.+++|+..+ .|||+|+++++++++++. +. ++|++|++.
T Consensus 171 ~~~-------~~~~--------------~~~~~~~a~a~G~~~~-~Vdg~d~~~v~~a~~~A~~~ar~~--~~P~lIev~ 226 (293)
T cd02000 171 PTS-------RQTA--------------GTSIADRAAAYGIPGI-RVDGNDVLAVYEAAKEAVERARAG--GGPTLIEAV 226 (293)
T ss_pred CHH-------HHhC--------------CccHHHHHHhCCCCEE-EECCCCHHHHHHHHHHHHHHHHcc--CCCEEEEEE
Confidence 443 1111 1223456799999999 999999999988777653 44 789999999
Q ss_pred eeeccCCch
Q 041265 173 TEKEKAMLP 181 (309)
Q Consensus 173 T~kg~G~~~ 181 (309)
|+|..|+..
T Consensus 227 ~~r~~gHs~ 235 (293)
T cd02000 227 TYRLGGHST 235 (293)
T ss_pred EeccCCCCC
Confidence 999998773
No 50
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.85 E-value=5e-21 Score=180.49 Aligned_cols=133 Identities=17% Similarity=0.144 Sum_probs=112.1
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLC 96 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~ 96 (309)
-+.|++|.++|+|+ |+|+|.|+++.+.+|+|++|||++++|.+||+||+|+.++.|+++|+.||+|+.++
T Consensus 107 ~~~g~~G~~lp~Ai----------Gaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg~s~ 176 (315)
T TIGR03182 107 GGHGIVGAQVPLAT----------GLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGT 176 (315)
T ss_pred cCcCcccccccHHH----------HHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCccccC
Confidence 56799999999999 99999999999999999999999999999999999999999999999999998766
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHh----hcCCCCCcEEEEEE
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQV----KAIPDPGAVLIHVI 172 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a----~~~~~~~P~~I~~~ 172 (309)
+.. .+.. .++...+.++||++.+ .|||+|+++++++++.+ ++. ++|++|++.
T Consensus 177 ~~~-------~~~~--------------~~~~a~~A~a~G~~~~-~Vdg~d~~av~~a~~~A~~~ar~~--~gP~lIe~~ 232 (315)
T TIGR03182 177 SVE-------RSSS--------------VTDLYKRGESFGIPGE-RVDGMDVLAVREAAKEAVERARSG--KGPILLEMK 232 (315)
T ss_pred CHH-------HHhC--------------CcCHHHHHHhCCCCEE-EECCCCHHHHHHHHHHHHHHHHcc--CCCEEEEEe
Confidence 543 1111 1122456799999999 99999999988877654 444 889999999
Q ss_pred eeeccCCchhh
Q 041265 173 TEKEKAMLPLK 183 (309)
Q Consensus 173 T~kg~G~~~~e 183 (309)
|+|..|+...+
T Consensus 233 t~R~~gHs~~D 243 (315)
T TIGR03182 233 TYRFRGHSMSD 243 (315)
T ss_pred CCcCCCCCCCC
Confidence 99998876644
No 51
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.82 E-value=3.3e-20 Score=176.72 Aligned_cols=132 Identities=22% Similarity=0.195 Sum_probs=108.7
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLC 96 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~ 96 (309)
-.+|++|.++|.|+ |+|+|.|+.+.+..|+|++|||++++|.+||+||.|+.++.|+++|+.||+|...+
T Consensus 119 g~~~~vG~~lp~Ai----------GaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~ 188 (341)
T TIGR03181 119 PPNIPIGTQYLHAA----------GVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISV 188 (341)
T ss_pred CCCchHhcchhHHH----------hHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCcccc
Confidence 56678999999999 99999999999999999999999999999999999999999999999999987654
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHH----HhhcCCCCCcEEEEEE
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLK----QVKAIPDPGAVLIHVI 172 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~----~a~~~~~~~P~~I~~~ 172 (309)
+.. .+.. .+++..+.++||+.++ .|||+|..+++++++ ++++. ++|++|+++
T Consensus 189 ~~~-------~~~~--------------~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~~--~gP~lIev~ 244 (341)
T TIGR03181 189 PRS-------KQTA--------------APTLAQKAIAYGIPGV-QVDGNDVLAVYAVTKEAVERARSG--GGPTLIEAV 244 (341)
T ss_pred chh-------hhhC--------------CcCHHHHHhhCCCCEE-EECCCCHHHHHHHHHHHHHHHHcC--CCCEEEEEE
Confidence 332 1110 1223456799999999 999999987776554 55554 889999999
Q ss_pred eeeccCCchh
Q 041265 173 TEKEKAMLPL 182 (309)
Q Consensus 173 T~kg~G~~~~ 182 (309)
|+|..|+...
T Consensus 245 t~R~~gH~~~ 254 (341)
T TIGR03181 245 TYRLGPHTTA 254 (341)
T ss_pred eecCCCCCCC
Confidence 9998876554
No 52
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.79 E-value=5.7e-19 Score=157.91 Aligned_cols=137 Identities=12% Similarity=0.111 Sum_probs=103.8
Q ss_pred CCCCCCCCCC------CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchH---HHHHHHHh
Q 041265 7 TCGLENVHDA------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMS---YEAINNAG 77 (309)
Q Consensus 7 ~~g~e~~~d~------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~---~EAln~A~ 77 (309)
.||+++|++. .++|++|++||.|+ |+|+ ++.+.+|+|++||||++||.+ ||+.+++.
T Consensus 43 ~gg~psH~~~~tpGi~~~~G~LG~gLs~A~----------G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~ 108 (227)
T cd02011 43 PGGIPSHAAPETPGSIHEGGELGYSLSHAY----------GAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLN 108 (227)
T ss_pred CCCCCCCCcccCCCeeecccchhhHHHHHH----------Hhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhc
Confidence 5677777764 89999999999999 9974 567889999999999999996 99999999
Q ss_pred hcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHH
Q 041265 78 VLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLK 156 (309)
Q Consensus 78 ~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~ 156 (309)
..+ ++|+.|.+||+|++..++. .. ..+ .+++ ..+|++|||+++ .|||||++++.++++
T Consensus 109 ~~~~~~vLpIld~Ng~~i~~pt~---~~---~~~-----~e~l---------~~~~~~yG~~~~-~VDG~D~~av~~~~a 167 (227)
T cd02011 109 PATDGAVLPILHLNGYKISNPTI---LA---RIS-----HEEL---------EALFRGYGYEPY-FVEGDDPETMHQAMA 167 (227)
T ss_pred ccccCCeEEEEEcCCCcccCCcc---cc---ccC-----chhH---------HHHHHhCCCceE-EECCCCHHHHHHHHH
Confidence 888 7888888899997665553 00 010 1222 567999999999 899999999887654
Q ss_pred ---------------HhhcC-CCCCc--EEEEEEeeeccC
Q 041265 157 ---------------QVKAI-PDPGA--VLIHVITEKEKA 178 (309)
Q Consensus 157 ---------------~a~~~-~~~~P--~~I~~~T~kg~G 178 (309)
++|+. ...+| -+|+++|.||..
T Consensus 168 ~a~~~~~~~i~~~~~~~~~~~~~~~~~wp~~~~~~~kg~~ 207 (227)
T cd02011 168 ATLDWAIEEIKAIQKRAREGGDASRPRWPMIVLRTPKGWT 207 (227)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCEEEEeCCCCCC
Confidence 22322 11334 256799999985
No 53
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=99.78 E-value=1.4e-19 Score=165.18 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=105.9
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCC-CeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKN-NHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~-~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~ 96 (309)
-+.++.+.||.|+ |.|+|.|++.++ .++||++|||+.+||.+|-|+|+|+.+..|++|+|.||+|++++
T Consensus 191 issplatqlpqAv----------GaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AIST 260 (432)
T KOG1182|consen 191 ISSPLATQLPQAV----------GAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAIST 260 (432)
T ss_pred ecchhhhccchhh----------hhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeecc
Confidence 3456677777777 999999988776 78999999999999999999999999999999999999999988
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEee
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI--PDPGAVLIHVITE 174 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~--~~~~P~~I~~~T~ 174 (309)
+.. .|..+ +-+ .-+-.++|+..+ +|||||..+++.|.+.+|+. ..++|++||+.|+
T Consensus 261 pts-------eQyr~-----DGI---------a~kG~aYGi~sI-RVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtY 318 (432)
T KOG1182|consen 261 PTS-------EQYRG-----DGI---------AVKGPAYGIRSI-RVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTY 318 (432)
T ss_pred ccH-------HHhcC-----Cce---------EEeccccceEEE-EecCcchHHHHHHHHHHHHHHHhccCchhhhhhhh
Confidence 886 23321 111 233478999999 99999999999999988753 2378999999999
Q ss_pred ec
Q 041265 175 KE 176 (309)
Q Consensus 175 kg 176 (309)
|-
T Consensus 319 Rv 320 (432)
T KOG1182|consen 319 RV 320 (432)
T ss_pred hh
Confidence 84
No 54
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=99.74 E-value=3.5e-18 Score=153.45 Aligned_cols=115 Identities=21% Similarity=0.352 Sum_probs=96.6
Q ss_pred HhhhcccccCCCCCc-hhhhhhC-CCceeeccchHHHHHHHHHHHhhCCCeeEEe-ecHHHHHhHHHHHHHhhhh-----
Q 041265 190 FCKILDNRMGGGTGL-NLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAEGLKPFCA-IYSSFLQRCFDQVAHDVDL----- 261 (309)
Q Consensus 190 ~~~~ld~dl~~~~~~-~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~-~~~~F~~ra~dqi~~~~a~----- 261 (309)
+++.+ +-++|++++ ++|.++| +.|++||||+|.++.|+|+|+|+.|+||||+ +-..|++.++|||.|++++
T Consensus 58 mGEeV-~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~efMtfnFsmqAid~IiNsaakt~YmS 136 (359)
T KOG0524|consen 58 MGEEV-GQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICEFMTFNFSMQAIDQIINSAAKTHYMS 136 (359)
T ss_pred echhh-hhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhhhhcchhHHHHHHHHHHHHHHHhccc
Confidence 44444 567788887 8999999 8899999999999999999999999999996 5778999999999999885
Q ss_pred ---CCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCC
Q 041265 262 ---QKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLV 307 (309)
Q Consensus 262 ---~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~ 307 (309)
+..|++|+++.+--.| -|++| +++-.+|+.++||+||++|.++.
T Consensus 137 gG~~~~piVfRGPnG~~~g-v~AqH-SQ~f~~wy~siPGlkvvapysae 183 (359)
T KOG0524|consen 137 GGQQPVPIVFRGPNGAAAG-VAAQH-SQDFASWYGSIPGLKVVAPYSAE 183 (359)
T ss_pred CCceeccEEEeCCCCcccc-hhhhh-hhhhHHHhccCCCceEeccCChh
Confidence 3689999987542233 57777 55555899999999999999875
No 55
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=99.53 E-value=7.3e-15 Score=130.48 Aligned_cols=110 Identities=22% Similarity=0.308 Sum_probs=92.3
Q ss_pred ccCCCCC-chhhhhhC-CCceeeccchHHHHHHHHHHHhhCCCeeEEe-ecHHHHHhHHHHHHHhhhhC---------CC
Q 041265 197 RMGGGTG-LNLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAEGLKPFCA-IYSSFLQRCFDQVAHDVDLQ---------KL 264 (309)
Q Consensus 197 dl~~~~~-~~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~-~~~~F~~ra~dqi~~~~a~~---------~~ 264 (309)
..+|.|. .-+|+++| .+|+||||++||+++|+.+|+|..|-+.|++ .|++|+..+||||.|.+++- -.
T Consensus 69 ~fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaeiqfadyifpafdqivneaakfryrsgnqfncg 148 (362)
T KOG0525|consen 69 AFGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCG 148 (362)
T ss_pred ccceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEEeeccccchhHHHHHHHHHhheeccCCccccC
Confidence 5667664 47899999 7899999999999999999999999999998 59999999999999998852 23
Q ss_pred CeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCC
Q 041265 265 PVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVL 308 (309)
Q Consensus 265 pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e 308 (309)
..+++.+- |.+|+.+..| ++..+++|.|.||+||+.|..|.|
T Consensus 149 ~ltir~p~-gavghg~~yh-sqspeaff~h~pgikvviprsp~q 190 (362)
T KOG0525|consen 149 GLTIRAPW-GAVGHGALYH-SQSPEAFFCHVPGIKVVIPRSPRQ 190 (362)
T ss_pred ceEEeccc-cccccccccc-cCCchhheecCCCceEEecCCcch
Confidence 56677664 4457656655 666679999999999999999875
No 56
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.53 E-value=5.8e-14 Score=119.68 Aligned_cols=125 Identities=20% Similarity=0.294 Sum_probs=90.8
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEE-EEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKR-LHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~-i~~nn~~~~~ 95 (309)
.+.|++|.++|.|+ |++++. ++.+|+|++|||+++. .+|+|+.|..++.|+++ |.+|+.|...
T Consensus 43 ~~~g~~G~~~~~a~----------Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~ 106 (168)
T cd00568 43 TGFGAMGYGLPAAI----------GAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTI 106 (168)
T ss_pred CCchhhhhhHHHHH----------HHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHH
Confidence 67899999999999 999885 3678999999999998 78999999999977665 4556555443
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVIT 173 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T 173 (309)
.... . ...+... .....-..++..+++++||++. +++ +++++.++++++++. ++|++|+++|
T Consensus 107 ~~~~---~---~~~~~~~-----~~~~~~~~d~~~~a~~~G~~~~-~v~--~~~~l~~a~~~a~~~--~~p~~i~v~~ 168 (168)
T cd00568 107 RMHQ---E---AFYGGRV-----SGTDLSNPDFAALAEAYGAKGV-RVE--DPEDLEAALAEALAA--GGPALIEVKT 168 (168)
T ss_pred HHHH---H---HHcCCCc-----ccccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHhC--CCCEEEEEEC
Confidence 3321 0 0000000 0000001244667899999998 776 499999999999876 8899999987
No 57
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.43 E-value=8.8e-13 Score=113.70 Aligned_cols=125 Identities=20% Similarity=0.084 Sum_probs=90.8
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|.+|.++|+|+ |.+++. ++.+|+|++|||+++. .++.|..|+.++.|++ +|.+|++|+.++
T Consensus 46 ~~g~mG~~lp~Ai----------Ga~la~----~~~~vv~i~GDG~f~~--~~~el~ta~~~~lpv~ivv~NN~~~~~~~ 109 (172)
T cd02004 46 TFGTLGVGLGYAI----------AAALAR----PDKRVVLVEGDGAFGF--SGMELETAVRYNLPIVVVVGNNGGWYQGL 109 (172)
T ss_pred CCCcccchHHHHH----------HHHHhC----CCCeEEEEEcchhhcC--CHHHHHHHHHcCCCEEEEEEECcccccch
Confidence 4588999999999 888873 4778999999999985 4688999999997765 556777887765
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVIT 173 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T 173 (309)
... +... -+..... .. .-.+++..++++||+++. +|+ +.+++.++++++++. ++|++||+++
T Consensus 110 ~~~---~~~~--~~~~~~~-~~----~~~~d~~~la~a~G~~~~-~v~--~~~el~~al~~a~~~--~~p~liev~i 171 (172)
T cd02004 110 DGQ---QLSY--GLGLPVT-TL----LPDTRYDLVAEAFGGKGE-LVT--TPEELKPALKRALAS--GKPALINVII 171 (172)
T ss_pred hhh---hhhc--cCCCcee-cc----CCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHHc--CCCEEEEEEc
Confidence 443 1100 0000000 00 002345667899999998 776 699999999999876 8899999986
No 58
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.42 E-value=5.4e-13 Score=115.84 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=91.7
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+.|.+|.++|+|+ |+++|. .+.+||+++|||++.... +++|..|..++.|++ +|.+|+.|+.+.
T Consensus 49 ~~g~mG~gl~~Ai----------Ga~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~ 113 (178)
T cd02008 49 TCTCMGASIGVAI----------GMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTG 113 (178)
T ss_pred ccccCccHHHHHh----------hHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccC
Confidence 5799999999999 999985 367899999999996321 788888999997665 567777775543
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVIT 173 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T 173 (309)
... ...... ......-..++..++++|||++....+++|++++.++++++.+. ++|++|+++.
T Consensus 114 ~~~--------~~~~~~----~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~~--~gp~lI~v~~ 176 (178)
T cd02008 114 GQP--------HPGTGK----TLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALAV--PGVSVIIAKR 176 (178)
T ss_pred CCC--------CCCCcc----cccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHhC--CCCEEEEEeC
Confidence 211 000000 00000001355778899999999555899999999999999876 8899999975
No 59
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.40 E-value=1.8e-12 Score=112.11 Aligned_cols=127 Identities=19% Similarity=0.211 Sum_probs=89.7
Q ss_pred CCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEE-EeCcchhhhhhh
Q 041265 20 GHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRL-HSNPQFRQLCQE 98 (309)
Q Consensus 20 G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i-~~nn~~~~~~~~ 98 (309)
|.+|.++|+|+ |.++|. ++.+++|++|||+++.+. ++|..|..++.|+++| .+|+.|+.++..
T Consensus 49 g~mG~~lp~ai----------Gaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~ 112 (178)
T cd02002 49 GGLGWGLPAAV----------GAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSF 112 (178)
T ss_pred ccccchHHHHH----------HHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHH
Confidence 99999999999 999884 367899999999998775 6788999999777655 566668876544
Q ss_pred hhcccchhhccC--CcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 041265 99 AFSSKDKKQKFG--GQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVIT 173 (309)
Q Consensus 99 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T 173 (309)
. ........ ....... .. .-..++..+++++|+++. .|++ .+++.++++++.+. ++|++||+++
T Consensus 113 ~---~~~~~~~~~~~~~~~~~-~~--~~~~d~~~~a~a~G~~~~-~v~~--~~el~~al~~a~~~--~~p~vi~v~v 178 (178)
T cd02002 113 L---KRVGPEGPGENAPDGLD-LL--DPGIDFAAIAKAFGVEAE-RVET--PEELDEALREALAE--GGPALIEVVV 178 (178)
T ss_pred H---HHHcCCCcccccccccc-cC--CCCCCHHHHHHHcCCceE-EeCC--HHHHHHHHHHHHhC--CCCEEEEEEC
Confidence 3 10000000 0000000 00 001344667899999998 7776 99999999999875 8899999874
No 60
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.38 E-value=8.7e-12 Score=128.82 Aligned_cols=242 Identities=17% Similarity=0.173 Sum_probs=160.1
Q ss_pred hhHhHhH-hcCC-----CCeEEEEEeCCc-cccchHHHHHHHHhhccCc---EEEEEeCcchhhhhhhhhcccchhhccC
Q 041265 41 GMAVGRD-LLGK-----NNHVISVIVEGA-TIARMSYEAINNAGVLNKA---LKRLHSNPQFRQLCQEAFSSKDKKQKFG 110 (309)
Q Consensus 41 G~A~a~k-~~~~-----~~~v~~~~GDG~-l~eG~~~EAln~A~~~~~~---Li~i~~nn~~~~~~~~~~~~~~~~~~~~ 110 (309)
|++-|.+ +.++ ....+++-||++ ..+|+++|.||+|..+..+ .|+|+.||+|+..|... + ...
T Consensus 630 GivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~---~----~Rs 702 (1228)
T PRK12270 630 GIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPE---S----SRS 702 (1228)
T ss_pred hhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCcc---c----ccc
Confidence 7776642 2221 223566669999 6899999999999999866 89999999887665443 0 000
Q ss_pred CcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEeeeccCCch------h
Q 041265 111 GQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI--PDPGAVLIHVITEKEKAMLP------L 182 (309)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~--~~~~P~~I~~~T~kg~G~~~------~ 182 (309)
..+. .++.+.++...+ -|||+|++++..+.+.+.+. +.++|++|++.|||.+|+-. .
T Consensus 703 ------s~y~--------td~ak~~~~Pif-hVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmt 767 (1228)
T PRK12270 703 ------SEYA--------TDVAKMIQAPIF-HVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMT 767 (1228)
T ss_pred ------chhh--------HHHHhhcCCCEE-eECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccC
Confidence 1111 223567888888 88999999999988765432 24889999999999888721 1
Q ss_pred h------------------------------------hhHH----H----------------------------------
Q 041265 183 K------------------------------------LQQT----R---------------------------------- 188 (309)
Q Consensus 183 e------------------------------------~~~~----~---------------------------------- 188 (309)
+ ..|. .
T Consensus 768 qP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~ 847 (1228)
T PRK12270 768 QPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVS 847 (1228)
T ss_pred CchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCC
Confidence 1 0000 0
Q ss_pred ------------------------------------------HHhhhc-------c--------cccCCCC---------
Q 041265 189 ------------------------------------------LFCKIL-------D--------NRMGGGT--------- 202 (309)
Q Consensus 189 ------------------------------------------~~~~~l-------d--------~dl~~~~--------- 202 (309)
+|++.| + -|.-.++
T Consensus 848 ~~~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~g~iDWa~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~ 927 (1228)
T PRK12270 848 AEVLERIGDAHVNLPEGFTVHPKLKPLLEKRREMAREGGIDWAFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLI 927 (1228)
T ss_pred HHHHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEe
Confidence 222222 0 1111111
Q ss_pred ---------CchhhhhhC-CCceeeccchHHHHHHHHHHHhhCCCeeEE---eecHHHH---HhHHHHHHHhhhh----C
Q 041265 203 ---------GLNLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAEGLKPFC---AIYSSFL---QRCFDQVAHDVDL----Q 262 (309)
Q Consensus 203 ---------~~~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~---~~~~~F~---~ra~dqi~~~~a~----~ 262 (309)
-+..|.+.- +=.++|+.++|.+.+|+=-|-+...-.-.+ .+|.||. |-..|+.... +. |
T Consensus 928 D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GFEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIss-~e~KWgQ 1006 (1228)
T PRK12270 928 DRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFISS-GEAKWGQ 1006 (1228)
T ss_pred cCCCCcccCcHhhcCCCcceEEEecchhhHHHhhccceeeecCCCcceeeehhhhcccccchHHHHHHHHhh-hHhhhcc
Confidence 011111111 014689999999999999999886533222 4799997 7888886655 32 5
Q ss_pred CCCeEEEEeCCCccCCCCCCCCCh--hHHHHHhcCCCcEEEEeCCCC
Q 041265 263 KLPVRFAIDRAGLVGADGPTHCGA--FDTTFMACLPNMVVMKDIKLV 307 (309)
Q Consensus 263 ~~pv~~~~~~~g~~g~~G~tH~~~--~d~~~~~~iP~~~v~~Ps~~~ 307 (309)
...|+++.+|+ +-| .||-|.+. |-..-|.+=.||+|..||+|+
T Consensus 1007 ~S~vvlLLPHG-yEG-QGPdHSSaRiERfLqlcAe~nm~Va~psTPA 1051 (1228)
T PRK12270 1007 RSGVVLLLPHG-YEG-QGPDHSSARIERFLQLCAEGNMTVAQPSTPA 1051 (1228)
T ss_pred ccceEEEccCC-cCC-CCCCcchHHHHHHHHhhccCCeEEEccCChH
Confidence 78999999984 533 48999774 555567888999999999986
No 61
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.33 E-value=9.9e-12 Score=107.87 Aligned_cols=127 Identities=17% Similarity=0.206 Sum_probs=90.8
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~ 95 (309)
.+-|.+|.++|+|+ |++++. .+.+++|++|||+++-+ ..| |..|..++.|++ +|.+|+.|+.+
T Consensus 48 ~~~g~mG~~~~~ai----------Ga~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~ 111 (178)
T cd02014 48 GLLATMGNGLPGAI----------AAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFI 111 (178)
T ss_pred CCCchhhhHHHHHH----------HHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHH
Confidence 34588999999999 988873 46789999999999988 677 566888887765 55666678776
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
+... .. ...+....+ . -..++..+.++||+++. .++ +.+++.++++++++. ++|++||++|.+
T Consensus 112 ~~~~---~~----~~~~~~~~~-~----~~~d~~~la~a~G~~~~-~v~--~~~el~~~l~~a~~~--~~p~liev~~~~ 174 (178)
T cd02014 112 KWEQ---EV----MGQPEFGVD-L----PNPDFAKIAEAMGIKGI-RVE--DPDELEAALDEALAA--DGPVVIDVVTDP 174 (178)
T ss_pred HHHH---HH----hcCCceecc-C----CCCCHHHHHHHCCCeEE-EeC--CHHHHHHHHHHHHhC--CCCEEEEEEeCC
Confidence 5433 10 000000000 0 01244567899999998 665 789999999999876 889999999965
Q ss_pred c
Q 041265 176 E 176 (309)
Q Consensus 176 g 176 (309)
.
T Consensus 175 ~ 175 (178)
T cd02014 175 N 175 (178)
T ss_pred C
Confidence 3
No 62
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.33 E-value=1e-11 Score=109.01 Aligned_cols=121 Identities=20% Similarity=0.242 Sum_probs=89.8
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccC-cEE-EEEeCcchhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNK-ALK-RLHSNPQFRQ 94 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~-~Li-~i~~nn~~~~ 94 (309)
++.|++|.+||.|+ |++++. .+..|+|++|||+++- ..+.|..|+.++. |++ +|.+|+.|+.
T Consensus 45 ~~~g~mG~~lpaAi----------Gaala~----p~~~Vv~i~GDG~f~m--~~~eL~ta~~~~l~~i~ivV~NN~~yg~ 108 (188)
T cd03371 45 LTVGSMGHASQIAL----------GIALAR----PDRKVVCIDGDGAALM--HMGGLATIGGLAPANLIHIVLNNGAHDS 108 (188)
T ss_pred eecCccccHHHHHH----------HHHHhC----CCCcEEEEeCCcHHHh--hccHHHHHHHcCCCCcEEEEEeCchhhc
Confidence 55699999999999 999884 4678999999999963 4567888888874 555 5567766654
Q ss_pred hhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 95 LCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
..... ..+ ...++..+++++|+.+...|+ +.+++.++++++.+. ++|++|+++|.
T Consensus 109 ~~~~~--------~~~-------------~~~d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~~--~~p~lIev~~~ 163 (188)
T cd03371 109 VGGQP--------TVS-------------FDVSLPAIAKACGYRAVYEVP--SLEELVAALAKALAA--DGPAFIEVKVR 163 (188)
T ss_pred cCCcC--------CCC-------------CCCCHHHHHHHcCCceEEecC--CHHHHHHHHHHHHhC--CCCEEEEEEec
Confidence 31100 000 012345678999999742565 899999999999875 88999999999
Q ss_pred eccC
Q 041265 175 KEKA 178 (309)
Q Consensus 175 kg~G 178 (309)
++++
T Consensus 164 ~~~~ 167 (188)
T cd03371 164 PGSR 167 (188)
T ss_pred CCCC
Confidence 8876
No 63
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.32 E-value=4.7e-12 Score=110.21 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=87.3
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhcc-CcEE-EEEeCcchhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLN-KALK-RLHSNPQFRQ 94 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~-~~Li-~i~~nn~~~~ 94 (309)
++.|++|.++|.|+ |+|+|.+ .+|+|++|||++.-. ...+..|..++ .|++ +|.+|+.|+.
T Consensus 39 ~~~g~mG~~lp~Ai----------Gaala~~-----~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~ 101 (179)
T cd03372 39 YMLGSMGLASSIGL----------GLALAQP-----RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGS 101 (179)
T ss_pred ccccchhhHHHHHH----------HHHhcCC-----CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccc
Confidence 45899999999999 9999853 679999999999432 23444455565 4554 5678888865
Q ss_pred hhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 95 LCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
..... .. . . ..+++..+.++||+++. .++| +.+++.+++++++ ++|++|+++|.
T Consensus 102 ~~~~~---------~~--~---~------~~~d~~~lA~a~G~~~~-~v~~-~~~el~~al~~a~----~gp~lIev~~~ 155 (179)
T cd03372 102 TGNQP---------TH--A---G------KKTDLEAVAKACGLDNV-ATVA-SEEAFEKAVEQAL----DGPSFIHVKIK 155 (179)
T ss_pred cCCCC---------CC--C---C------CCCCHHHHHHHcCCCeE-EecC-CHHHHHHHHHHhc----CCCEEEEEEEc
Confidence 42110 00 0 0 01234567899999998 7887 8999999999987 46999999998
Q ss_pred eccCC
Q 041265 175 KEKAM 179 (309)
Q Consensus 175 kg~G~ 179 (309)
++++.
T Consensus 156 ~~~~~ 160 (179)
T cd03372 156 PGNTD 160 (179)
T ss_pred CCCCC
Confidence 87763
No 64
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.30 E-value=1.3e-11 Score=107.74 Aligned_cols=129 Identities=22% Similarity=0.311 Sum_probs=91.9
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.+||.|+ |++++. ++.+|+|++|||+++ +....|..|..++.|++ +|.+|+.|..++
T Consensus 48 ~~g~mG~~lp~ai----------Ga~la~----~~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~ 111 (186)
T cd02015 48 GLGTMGFGLPAAI----------GAKVAR----PDKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSLGMVR 111 (186)
T ss_pred CccchhchHHHHH----------HHHHhC----CCCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCccHHHH
Confidence 3478999999999 998873 467899999999998 45566999999997775 567777777665
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
... .. ..+....... . .-.+++....++||+++. +|+ +.+++.++++++.+. ++|++||+.|.+.
T Consensus 112 ~~~---~~---~~~~~~~~~~-~---~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~~--~~p~liev~~~~~ 176 (186)
T cd02015 112 QWQ---EL---FYEGRYSHTT-L---DSNPDFVKLAEAYGIKGL-RVE--KPEELEAALKEALAS--DGPVLLDVLVDPE 176 (186)
T ss_pred HHH---HH---HcCCceeecc-C---CCCCCHHHHHHHCCCceE-EeC--CHHHHHHHHHHHHhC--CCCEEEEEEeCCC
Confidence 432 10 0010000000 0 001345667899999998 776 489999999999876 8899999999754
Q ss_pred c
Q 041265 177 K 177 (309)
Q Consensus 177 ~ 177 (309)
.
T Consensus 177 ~ 177 (186)
T cd02015 177 E 177 (186)
T ss_pred c
Confidence 4
No 65
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.29 E-value=3.4e-11 Score=106.92 Aligned_cols=136 Identities=20% Similarity=0.241 Sum_probs=93.3
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcE-EEEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKAL-KRLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~L-i~i~~nn~~~~~~ 96 (309)
.-|++|.|||+|+ |.++|. .+.+|||++|||++.-+. -.|..|..++.|+ ++|.+|+.|+.++
T Consensus 46 ~~gsmG~~lpaAi----------Ga~la~----p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 109 (205)
T cd02003 46 GYSCMGYEIAAGL----------GAKLAK----PDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCIN 109 (205)
T ss_pred CcchhhhHHHHHH----------HHHHhC----CCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHHH
Confidence 5588999999999 998873 567899999999998754 3466688888665 5678888898766
Q ss_pred hhhhcccchh-hccCCcccchhh----hHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 97 QEAFSSKDKK-QKFGGQMHEIDA----FSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
... +... +..+........ .....-.+++..++++||+++. +| ++.+++.++++++.+. ++|++|++
T Consensus 110 ~~q---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~-~v--~~~~el~~al~~a~~~--~gp~lIeV 181 (205)
T cd02003 110 NLQ---ESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVE-KV--KTIEELKAALAKAKAS--DRTTVIVI 181 (205)
T ss_pred HHH---HHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEE-EE--CCHHHHHHHHHHHHhC--CCCEEEEE
Confidence 443 1000 000000000000 0000012355778999999998 66 6899999999999876 88999999
Q ss_pred Eeeecc
Q 041265 172 ITEKEK 177 (309)
Q Consensus 172 ~T~kg~ 177 (309)
+|.+..
T Consensus 182 ~v~~~~ 187 (205)
T cd02003 182 KTDPKS 187 (205)
T ss_pred Eeeccc
Confidence 997654
No 66
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.25 E-value=7.1e-11 Score=104.19 Aligned_cols=129 Identities=20% Similarity=0.212 Sum_probs=92.0
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|.+|.++|+|+ |+++|. .+.+|+|++|||+++-. ..| |..|..++.|++ +|.+|+.|+.++
T Consensus 51 ~~g~mG~~lpaai----------Ga~la~----p~r~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~yg~~~ 114 (196)
T cd02013 51 SFGNCGYALPAII----------GAKAAA----PDRPVVAIAGDGAWGMS-MME-IMTAVRHKLPVTAVVFRNRQWGAEK 114 (196)
T ss_pred CCcccccHHHHHH----------HHHHhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECchhHHHH
Confidence 4588999999999 998873 46789999999999874 344 556888887776 456888998765
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhc---CCCCCcEEEEEEe
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKA---IPDPGAVLIHVIT 173 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~---~~~~~P~~I~~~T 173 (309)
..+ +. ..+...... + .-.+++..+.++||++.. +|+ +.++|.++++++.+ . ++|++|++++
T Consensus 115 ~~q---~~---~~~~~~~~~-~----~~~~d~~~lA~a~G~~~~-~v~--~~~el~~al~~a~~~~~~--~~p~liev~v 178 (196)
T cd02013 115 KNQ---VD---FYNNRFVGT-E----LESESFAKIAEACGAKGI-TVD--KPEDVGPALQKAIAMMAE--GKTTVIEIVC 178 (196)
T ss_pred HHH---HH---HcCCCcccc-c----CCCCCHHHHHHHCCCEEE-EEC--CHHHHHHHHHHHHhcCCC--CCeEEEEEEe
Confidence 433 10 011100000 0 002345667899999998 665 69999999998876 4 8899999999
Q ss_pred eeccC
Q 041265 174 EKEKA 178 (309)
Q Consensus 174 ~kg~G 178 (309)
.+..+
T Consensus 179 ~~~~~ 183 (196)
T cd02013 179 DQELG 183 (196)
T ss_pred CcccC
Confidence 76654
No 67
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.23 E-value=6.1e-11 Score=110.65 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=106.4
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCe-EEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNH-VISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~-v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~ 95 (309)
+.....|.++++|. |+++|.++++++.. |++++|||+..++.+ |+|++|+.++.|+++|+.||.+...
T Consensus 66 ~i~~~~G~~~~~A~----------G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~ 134 (300)
T PRK11864 66 VLHTAFAATAAVAS----------GIEEALKARGEKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMN 134 (300)
T ss_pred ceeehhhChHHHHH----------HHHHHHHhhCCCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeec
Confidence 56788899999999 99999988876544 555999999999885 9999999999999988888877665
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEee-
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITE- 174 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~- 174 (309)
|-.+.|. .-..+ ........=+..-..+....+++.|..|+-.++-.|+.++.++++++.+. +||.+|++.+.
T Consensus 135 TGgQ~S~---~Tp~g-a~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~~--~Gps~I~~~spC 208 (300)
T PRK11864 135 TGIQRSS---STPYG-AWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKEI--RGFKFIHLLAPC 208 (300)
T ss_pred CCCCCCC---CCcCC-CccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC--CCCEEEEEeCCC
Confidence 5444111 00001 00000000000001233557889999999788989999999999999986 89999999985
Q ss_pred -eccCCchhh
Q 041265 175 -KEKAMLPLK 183 (309)
Q Consensus 175 -kg~G~~~~e 183 (309)
.+.++.+.+
T Consensus 209 ~~~~~~~~~~ 218 (300)
T PRK11864 209 PPGWRFDPDK 218 (300)
T ss_pred CCCCCcChHH
Confidence 444444433
No 68
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.17 E-value=1.2e-10 Score=99.26 Aligned_cols=117 Identities=19% Similarity=0.219 Sum_probs=84.4
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhcc-CcEEE-EEeCcchhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLN-KALKR-LHSNPQFRQ 94 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~-~~Li~-i~~nn~~~~ 94 (309)
+.-|++|.++|.|+ |++++. +.+|||++|||+++-.. ..|..++.++ .|+++ |.+|+.|+.
T Consensus 39 ~~~gsmG~~lp~Ai----------Ga~~a~-----~~~Vv~i~GDG~f~m~~--~el~t~~~~~~~~i~~vV~nN~~~g~ 101 (157)
T cd02001 39 YMLGSMGLAGSIGL----------GLALGL-----SRKVIVVDGDGSLLMNP--GVLLTAGEFTPLNLILVVLDNRAYGS 101 (157)
T ss_pred EeecchhhHHHHHH----------HHHhcC-----CCcEEEEECchHHHhcc--cHHHHHHHhcCCCEEEEEEeCccccc
Confidence 45799999999999 999984 26799999999993221 2245566664 77765 567777765
Q ss_pred hhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 95 LCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
+... .... ..+++..+.+++|+++. ++ ++.+++.++++++.+. ++|++|++++.
T Consensus 102 ~~~~---------~~~~------------~~~d~~~lA~a~G~~~~-~v--~~~~el~~al~~a~~~--~gp~vi~v~i~ 155 (157)
T cd02001 102 TGGQ---------PTPS------------SNVNLEAWAAACGYLVL-SA--PLLGGLGSEFAGLLAT--TGPTLLHAPIA 155 (157)
T ss_pred cCCc---------CCCC------------CCCCHHHHHHHCCCceE-Ec--CCHHHHHHHHHHHHhC--CCCEEEEEEec
Confidence 3210 0000 01334567899999998 66 5899999999999876 88999999986
Q ss_pred ec
Q 041265 175 KE 176 (309)
Q Consensus 175 kg 176 (309)
++
T Consensus 156 ~~ 157 (157)
T cd02001 156 PG 157 (157)
T ss_pred CC
Confidence 53
No 69
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.16 E-value=1.4e-10 Score=101.17 Aligned_cols=125 Identities=19% Similarity=0.095 Sum_probs=88.8
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhcc-CcEEEEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLN-KALKRLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~ 95 (309)
..-|.+|.++|.|+ |++++. .+.+|+|++|||+++- ..+|.. .|..++ +.+++|.+|+.|+.+
T Consensus 47 ~~~g~mG~~l~~ai----------Gaala~----~~~~vv~i~GDG~f~~-~~~el~-ta~~~~~p~~ivV~nN~~~~~~ 110 (183)
T cd02005 47 PLWGSIGYSVPAAL----------GAALAA----PDRRVILLVGDGSFQM-TVQELS-TMIRYGLNPIIFLINNDGYTIE 110 (183)
T ss_pred cchhhHhhhHHHHH----------HHHHhC----CCCeEEEEECCchhhc-cHHHHH-HHHHhCCCCEEEEEECCCcEEE
Confidence 34589999999999 999884 4578999999999955 568855 566767 555677888888765
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcC----CeEEecCCCCCHHHHHHHHHHhhc-CCCCCcEEEE
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLG----LYYIGPVDGHNLEDLAYVLKQVKA-IPDPGAVLIH 170 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G----~~~~~~vDG~D~~~l~~al~~a~~-~~~~~P~~I~ 170 (309)
+... ....... . ...+++....+++| +++. .+ ++.+++.++++++.+ . ++|++||
T Consensus 111 ~~~~--------~~~~~~~---~----~~~~d~~~ia~a~G~~~~~~~~-~v--~~~~el~~al~~a~~~~--~~p~lie 170 (183)
T cd02005 111 RAIH--------GPEASYN---D----IANWNYTKLPEVFGGGGGGLSF-RV--KTEGELDEALKDALFNR--DKLSLIE 170 (183)
T ss_pred EEec--------cCCcCcc---c----CCCCCHHHHHHHhCCCccccEE-Ee--cCHHHHHHHHHHHHhcC--CCcEEEE
Confidence 4221 0000000 0 01234466789999 5776 44 789999999999987 5 8899999
Q ss_pred EEeeecc
Q 041265 171 VITEKEK 177 (309)
Q Consensus 171 ~~T~kg~ 177 (309)
++|.+..
T Consensus 171 v~~~~~~ 177 (183)
T cd02005 171 VILPKDD 177 (183)
T ss_pred EEcCccc
Confidence 9997543
No 70
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.15 E-value=1.3e-10 Score=98.29 Aligned_cols=128 Identities=17% Similarity=0.238 Sum_probs=90.1
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~ 95 (309)
...|.+|.++|+|+ |+++| ..+.+|||++|||++.-. .-.|..|..++.|++ +|.+|+.|...
T Consensus 25 ~~~g~mG~~~~~ai----------Ga~~a----~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~ 88 (153)
T PF02775_consen 25 GGFGSMGYALPAAI----------GAALA----RPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMT 88 (153)
T ss_dssp TTTT-TTTHHHHHH----------HHHHH----STTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHH
T ss_pred CCccccCCHHHhhh----------HHHhh----cCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEe
Confidence 57899999999999 99997 457889999999999666 444666777776654 66888888766
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
.... . ....... .....+..-..++....+++|+++. +|+-.|.+++.++++++.+. ++|++||+
T Consensus 89 ~~~~---~----~~~~~~~-~~~~~~~~~~~d~~~~a~a~G~~~~-~v~~~~~~el~~al~~a~~~--~gp~vIeV 153 (153)
T PF02775_consen 89 GGQQ---T----PFGGGRF-SGVDGKTFPNPDFAALAEAFGIKGA-RVTTPDPEELEEALREALES--GGPAVIEV 153 (153)
T ss_dssp HHHH---H----HTTSTCH-HSTBTTTSTTCGHHHHHHHTTSEEE-EESCHSHHHHHHHHHHHHHS--SSEEEEEE
T ss_pred cccc---c----cCcCccc-ccccccccccCCHHHHHHHcCCcEE-EEccCCHHHHHHHHHHHHhC--CCcEEEEc
Confidence 5443 1 0110000 0000000112345677899999988 88888889999999999976 89999986
No 71
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.15 E-value=2.6e-10 Score=99.44 Aligned_cols=120 Identities=20% Similarity=0.274 Sum_probs=87.6
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhcc-CcEEE-EEeCcchhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLN-KALKR-LHSNPQFRQ 94 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~-~~Li~-i~~nn~~~~ 94 (309)
++.|++|.|+|+|+ |+++|. +.+|+|++|||+++.+. ..|..|+.++ .|+++ |.+|+.|+.
T Consensus 39 ~~~gsmG~~lpaAi----------Ga~la~-----~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~ 101 (181)
T TIGR03846 39 YMLGSMGLASSIGL----------GLALAT-----DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGS 101 (181)
T ss_pred eeccccccHHHHHH----------HHHHcC-----CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCcccc
Confidence 45899999999999 999984 66799999999998554 6677788887 58765 467767765
Q ss_pred hhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 95 LCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
+... +.+ .. -.+++....++||+++...| ++.+++.++|+ +.+. ++|.+|++.+.
T Consensus 102 ~~~q---------~~~--~~---------~~~d~~~lA~a~G~~~~~~v--~~~~~l~~al~-a~~~--~~p~li~v~~~ 156 (181)
T TIGR03846 102 TGNQ---------PTP--AS---------RRTDLELVAKAAGIRNVEKV--ADEEELRDALK-ALAM--KGPTFIHVKVK 156 (181)
T ss_pred ccCc---------CCC--CC---------CCCCHHHHHHHCCCCeEEEe--CCHHHHHHHHH-HHcC--CCCEEEEEEeC
Confidence 4210 000 00 01234567899999987314 68999999997 7665 88999999997
Q ss_pred eccC
Q 041265 175 KEKA 178 (309)
Q Consensus 175 kg~G 178 (309)
+..-
T Consensus 157 ~~~~ 160 (181)
T TIGR03846 157 PGNA 160 (181)
T ss_pred CCCC
Confidence 6653
No 72
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.13 E-value=5.2e-10 Score=97.16 Aligned_cols=126 Identities=16% Similarity=0.254 Sum_probs=90.4
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~ 95 (309)
.+.|.+|.++|.|+ |.+++. .+.+|||++|||++. +....|..|..++.|++ +|.+|++|..+
T Consensus 45 ~~~g~mG~~lp~ai----------Ga~la~----~~~~vv~i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~~g~~ 108 (177)
T cd02010 45 NGLATMGVALPGAI----------GAKLVY----PDRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNGYGLI 108 (177)
T ss_pred CCChhhhhHHHHHH----------HHHHhC----CCCcEEEEEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCcchHH
Confidence 35589999999999 999883 467899999999996 44566767888887765 55788889876
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
+... +. ...... .. ++ -.+++....++||.+.. .+ .+.+++.++++++.+. ++|++|++.|.+
T Consensus 109 ~~~~---~~---~~~~~~-~~-~~----~~~d~~~~a~a~G~~~~-~v--~~~~el~~al~~a~~~--~~p~liev~~~~ 171 (177)
T cd02010 109 KWKQ---EK---EYGRDS-GV-DF----GNPDFVKYAESFGAKGY-RI--ESADDLLPVLERALAA--DGVHVIDCPVDY 171 (177)
T ss_pred HHHH---HH---hcCCcc-cC-cC----CCCCHHHHHHHCCCEEE-EE--CCHHHHHHHHHHHHhC--CCCEEEEEEecc
Confidence 4332 10 000000 00 00 01244667899999998 66 4899999999999876 889999999964
No 73
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.10 E-value=4.2e-10 Score=97.46 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=85.1
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~ 97 (309)
-|.+|.++|+++ |.++|. +.+|||++|||++.-. ...|..|..++.|++ +|.+|+.|+....
T Consensus 50 ~g~mG~~l~~ai----------Ga~la~-----~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~~~~ 112 (175)
T cd02009 50 ASGIDGTLSTAL----------GIALAT-----DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGIFSL 112 (175)
T ss_pred ccchhhHHHHHH----------HHHhcC-----CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCchhee
Confidence 377899999999 999884 5679999999999544 355666777787765 5677777764322
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVIT 173 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T 173 (309)
.. . ...+... ......-..+++....+++|+++. +| .+.+++.++|+++.+. ++|++||+.+
T Consensus 113 ~~---~---~~~~~~~---~~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~el~~al~~a~~~--~~p~lIev~v 174 (175)
T cd02009 113 LP---Q---ASFEDEF---ERLFGTPQGLDFEHLAKAYGLEYR-RV--SSLDELEQALESALAQ--DGPHVIEVKT 174 (175)
T ss_pred cc---C---Ccccchh---hhhhcCCCCCCHHHHHHHcCCCee-eC--CCHHHHHHHHHHHHhC--CCCEEEEEeC
Confidence 11 0 0000000 000000012456778899999998 66 4899999999999876 8899999986
No 74
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.09 E-value=5.4e-10 Score=112.55 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=90.2
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEE-EEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKR-LHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~-i~~nn~~~~~~~ 97 (309)
.|++|.++|.|+ |++++. .+.+|+|++|||+++.+. +.|..|..++.|+++ |.+|+.|+.++.
T Consensus 406 ~g~mG~~lp~ai----------Ga~la~----p~~~vv~i~GDG~f~~~~--~eL~ta~~~~lp~~~vv~NN~~~~~~~~ 469 (530)
T PRK07092 406 SGGLGYGLPAAV----------GVALAQ----PGRRVIGLIGDGSAMYSI--QALWSAAQLKLPVTFVILNNGRYGALRW 469 (530)
T ss_pred CCcccchHHHHH----------HHHHhC----CCCeEEEEEeCchHhhhH--HHHHHHHHhCCCcEEEEEeChHHHHHHH
Confidence 589999999999 999884 467899999999999874 889999999977754 566666877654
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVIT 173 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T 173 (309)
.. +. ...+... .. ++ -..++..+.++||+++. .|+ +.+++.++++++.+. ++|++||+.|
T Consensus 470 ~~---~~--~~~~~~~-~~-~~----~~~d~~~~a~~~G~~~~-~v~--~~~~l~~al~~a~~~--~~p~liev~~ 529 (530)
T PRK07092 470 FA---PV--FGVRDVP-GL-DL----PGLDFVALARGYGCEAV-RVS--DAAELADALARALAA--DGPVLVEVEV 529 (530)
T ss_pred HH---Hh--hCCCCCC-CC-CC----CCCCHHHHHHHCCCeEE-EeC--CHHHHHHHHHHHHhC--CCCEEEEEEc
Confidence 32 10 0001000 00 00 01244667899999998 765 789999999999876 8899999987
No 75
>PRK08266 hypothetical protein; Provisional
Probab=99.07 E-value=9.2e-10 Score=111.12 Aligned_cols=128 Identities=22% Similarity=0.311 Sum_probs=93.6
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEE-EEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKR-LHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~-i~~nn~~~~~~~ 97 (309)
-|++|.+||.|+ |++++ ..+.+|+|++|||+++-+ .+.|..|..++.|+++ |.+|++|+.++.
T Consensus 401 ~GsmG~~lp~ai----------Ga~la----~p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~ 464 (542)
T PRK08266 401 QGTLGYGFPTAL----------GAKVA----NPDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRR 464 (542)
T ss_pred CcccccHHHHHH----------HHHHh----CCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 489999999999 99887 356789999999999887 5888899999977664 567767876654
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeecc
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEK 177 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~ 177 (309)
.+ +. ..++.....+ .-.+++..+.++||.++. .|+ +.+++.++++++.+. ++|++||++|.++.
T Consensus 465 ~~---~~---~~~~~~~~~~-----~~~~d~~~la~a~G~~~~-~v~--~~~el~~al~~a~~~--~~p~liev~i~~~~ 528 (542)
T PRK08266 465 DQ---KR---RFGGRVVASD-----LVNPDFVKLAESFGVAAF-RVD--SPEELRAALEAALAH--GGPVLIEVPVPRGS 528 (542)
T ss_pred HH---HH---hcCCCcccCC-----CCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHHHHHHhC--CCcEEEEEEecCCC
Confidence 33 10 0111100000 001345667899999998 665 689999999998876 78999999998775
Q ss_pred C
Q 041265 178 A 178 (309)
Q Consensus 178 G 178 (309)
.
T Consensus 529 ~ 529 (542)
T PRK08266 529 E 529 (542)
T ss_pred C
Confidence 4
No 76
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=5.5e-09 Score=105.04 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=64.2
Q ss_pred CceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHH---HhHHHH--HHHhhhhC-----CCCeEEEEeCCCcc--CCCC
Q 041265 213 IRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFL---QRCFDQ--VAHDVDLQ-----KLPVRFAIDRAGLV--GADG 280 (309)
Q Consensus 213 ~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~---~ra~dq--i~~~~a~~-----~~pv~~~~~~~g~~--g~~G 280 (309)
+|+++ .++|+.+.|.+.|.++.|-+-++.+|=+|+ .-++.| +|..++.+ ..|-......++.+ +..|
T Consensus 461 GRV~e-~LSEh~c~Gwlegy~LtGr~glf~sYEaF~~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~TS~vw~QdhNG 539 (793)
T COG3957 461 GRVME-VLSEHACQGWLEGYLLTGRHGLFASYEAFAHIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLTSHVWRQDHNG 539 (793)
T ss_pred ceeeh-hhcHHHHHHHHHHHHhcCCccceeeHHHHHHHHHHHHhhhHHHHHHHHhcccCCCCCcccceeehhhhhcccCC
Confidence 58888 999999999999999999999998888886 333443 23333321 12222223335552 6789
Q ss_pred CCCCChhHHHH-HhcCCC-cEEEEeCCCCC
Q 041265 281 PTHCGAFDTTF-MACLPN-MVVMKDIKLVL 308 (309)
Q Consensus 281 ~tH~~~~d~~~-~~~iP~-~~v~~Ps~~~e 308 (309)
-|||...-+.. +...|+ ++|+.|+|+.-
T Consensus 540 fsHQdPgf~~~~~~k~~d~vRvyfPpDaNt 569 (793)
T COG3957 540 FSHQDPGFIDHVANKKSDIVRVYFPPDANT 569 (793)
T ss_pred CccCCchHHHHHHhhccCceeEecCCCCcc
Confidence 99998754433 344444 58999999853
No 77
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.06 E-value=1.4e-09 Score=96.34 Aligned_cols=137 Identities=17% Similarity=0.167 Sum_probs=90.2
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+.|++|.++|.|+ |.++|. .+.+|||++|||+++=.. -.|..|..++.|++ +|.+|+.|+.++
T Consensus 55 ~~GsmG~~lpaai----------Ga~la~----p~~~vv~i~GDG~f~m~~--~eL~Ta~~~~lpviivV~NN~~yg~~~ 118 (202)
T cd02006 55 QAGPLGWTVPAAL----------GVAAAD----PDRQVVALSGDYDFQFMI--EELAVGAQHRIPYIHVLVNNAYLGLIR 118 (202)
T ss_pred CccchhhhhHHHH----------hHHhhC----CCCeEEEEEeChHhhccH--HHHHHHHHhCCCeEEEEEeCchHHHHH
Confidence 4588999999999 999883 467899999999996543 55666888887765 567777888765
Q ss_pred hhhhcccchhhccCCcccchhhhH--H-hhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC--CCCCcEEEEE
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFS--R-EIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI--PDPGAVLIHV 171 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~--~~~~P~~I~~ 171 (309)
..+ +.......... ...... . ..-.+++..+.++||.+.. +| .+.++|.++|+++.+. +.++|++|++
T Consensus 119 ~~q---~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~lA~a~G~~~~-~v--~~~~el~~al~~a~~~~~~~~~p~liev 191 (202)
T cd02006 119 QAQ---RAFDMDYQVNL-AFENINSSELGGYGVDHVKVAEGLGCKAI-RV--TKPEELAAAFEQAKKLMAEHRVPVVVEA 191 (202)
T ss_pred HHH---HHhcCcccccc-ccccccccccCCCCCCHHHHHHHCCCEEE-EE--CCHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence 443 10000000000 000000 0 0002455678899999988 66 5789999999988741 1178999999
Q ss_pred Eeeecc
Q 041265 172 ITEKEK 177 (309)
Q Consensus 172 ~T~kg~ 177 (309)
++.+..
T Consensus 192 ~i~~~~ 197 (202)
T cd02006 192 ILERVT 197 (202)
T ss_pred Eecccc
Confidence 986544
No 78
>PRK07524 hypothetical protein; Provisional
Probab=99.06 E-value=7.7e-10 Score=111.52 Aligned_cols=127 Identities=20% Similarity=0.173 Sum_probs=93.1
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~ 97 (309)
-|.+|.+||.|+ |.++|. .+.+|+|++|||+++-. ..| |..|..++.|++ +|.+|+.|+.+..
T Consensus 406 ~g~mG~~lp~ai----------Ga~lA~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpi~~vV~NN~~~g~i~~ 469 (535)
T PRK07524 406 YGTLGYGLPAAI----------GAALGA----PERPVVCLVGDGGLQFT-LPE-LASAVEADLPLIVLLWNNDGYGEIRR 469 (535)
T ss_pred cccccchHHHHH----------HHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECCchHHHHH
Confidence 489999999999 999983 56789999999999733 344 889999997765 5567778877654
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeecc
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEK 177 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~ 177 (309)
.. +. .+......+ ...+++....++||.++. .|+ +.+++.++++++.+. ++|++||+++.+.+
T Consensus 470 ~~---~~----~~~~~~~~~-----~~~~d~~~~A~a~G~~~~-~v~--~~~el~~al~~a~~~--~~p~liev~~~~~~ 532 (535)
T PRK07524 470 YM---VA----RDIEPVGVD-----PYTPDFIALARAFGCAAE-RVA--DLEQLQAALRAAFAR--PGPTLIEVDQACWF 532 (535)
T ss_pred HH---HH----hcCCccccC-----CCCCCHHHHHHHCCCcEE-EeC--CHHHHHHHHHHHHhC--CCCEEEEEECCccc
Confidence 33 10 010000000 012345667899999988 775 899999999999876 88999999998866
Q ss_pred C
Q 041265 178 A 178 (309)
Q Consensus 178 G 178 (309)
+
T Consensus 533 ~ 533 (535)
T PRK07524 533 A 533 (535)
T ss_pred c
Confidence 5
No 79
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.06 E-value=7.9e-10 Score=112.02 Aligned_cols=127 Identities=14% Similarity=0.162 Sum_probs=91.2
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEE-EeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRL-HSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i-~~nn~~~~~~ 96 (309)
..|.+|.|||.|+ |++++ ..+.+|||++|||+++ +....|..|..++.|+++| .+|+.|+.++
T Consensus 413 ~~g~mG~glpaai----------Ga~la----~p~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~~~~~~ 476 (557)
T PRK08199 413 TSGSMGYGLPAAI----------AAKLL----FPERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGMYGTIR 476 (557)
T ss_pred CCccccchHHHHH----------HHHHh----CCCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCcchHHH
Confidence 4589999999999 88887 3567899999999987 5667888899999887654 5565677655
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
... +. ..++..... ++ -..++....++||+++. +|+ +.+++.++++++++. ++|++|+++|.+.
T Consensus 477 ~~~---~~---~~~~~~~~~-~~----~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~~--~gp~li~v~~~~~ 540 (557)
T PRK08199 477 MHQ---ER---EYPGRVSGT-DL----TNPDFAALARAYGGHGE-TVE--RTEDFAPAFERALAS--GKPALIEIRIDPE 540 (557)
T ss_pred HHH---HH---hcCCccccc-cC----CCCCHHHHHHHCCCeEE-EeC--CHHHHHHHHHHHHhC--CCCEEEEEEeCHH
Confidence 332 10 011110000 00 01345677899999988 775 789999999999876 8899999999754
No 80
>PRK06163 hypothetical protein; Provisional
Probab=99.06 E-value=2.3e-09 Score=95.15 Aligned_cols=137 Identities=16% Similarity=0.177 Sum_probs=90.3
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhc-cCcEE-EEEeCcchhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVL-NKALK-RLHSNPQFRQ 94 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~-~~~Li-~i~~nn~~~~ 94 (309)
+..|.+|.|+|+|+ |+++|. .+.+|||++|||+++=. ...|..|..+ +.|++ +|.+|+.|+.
T Consensus 54 ~~~GsMG~glpaAi----------GaalA~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~ 117 (202)
T PRK06163 54 YMLGSMGLAFPIAL----------GVALAQ----PKRRVIALEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQI 117 (202)
T ss_pred EeecccccHHHHHH----------HHHHhC----CCCeEEEEEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhh
Confidence 45799999999999 999983 56789999999997422 2345556655 45665 5566667763
Q ss_pred hhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCe-EEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 041265 95 LCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLY-YIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVIT 173 (309)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~-~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T 173 (309)
.. . +...... .+++..+.++||++ .. .+ .+.+++.++++++.+. ++|++|++++
T Consensus 118 ~~-~---------~~~~~~~----------~~Df~~lA~a~G~~~~~-~v--~~~~el~~al~~a~~~--~~p~lIeV~i 172 (202)
T PRK06163 118 TG-G---------QPTLTSQ----------TVDVVAIARGAGLENSH-WA--ADEAHFEALVDQALSG--PGPSFIAVRI 172 (202)
T ss_pred cC-C---------ccCCCCC----------CCCHHHHHHHCCCceEE-Ee--CCHHHHHHHHHHHHhC--CCCEEEEEEe
Confidence 21 0 0000000 12345678999997 44 44 5899999999999876 8899999999
Q ss_pred eeccCCchhh---hhHHHHHhhhc
Q 041265 174 EKEKAMLPLK---LQQTRLFCKIL 194 (309)
Q Consensus 174 ~kg~G~~~~e---~~~~~~~~~~l 194 (309)
.+....+..+ ..-.+.|.+.|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~ 196 (202)
T PRK06163 173 DDKPGVGTTERDPAQIRERFMQGL 196 (202)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHh
Confidence 7655433333 22344454444
No 81
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.05 E-value=7.4e-10 Score=106.40 Aligned_cols=127 Identities=18% Similarity=0.227 Sum_probs=88.3
Q ss_pred CCCCCC-CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhcc-CcEEE-EE
Q 041265 11 ENVHDA-FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLN-KALKR-LH 87 (309)
Q Consensus 11 e~~~d~-~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~-~~Li~-i~ 87 (309)
+++++. ...|++|.++|+|+ |+|++. ++.+|||+.|||++.- ...+|..++.++ .|+++ |.
T Consensus 211 ~~~~~~f~~~GsMG~a~p~Al----------G~ala~----p~r~Vv~i~GDGsflm--~~~eL~t~~~~~~~nli~VVl 274 (361)
T TIGR03297 211 QGHARDFLTVGSMGHASQIAL----------GLALAR----PDQRVVCLDGDGAALM--HMGGLATIGTQGPANLIHVLF 274 (361)
T ss_pred cCCCCceEeechhhhHHHHHH----------HHHHHC----CCCCEEEEEChHHHHH--HHHHHHHHHHhCCCCeEEEEE
Confidence 344444 46799999999999 999984 4678999999999842 224577777777 47765 45
Q ss_pred eCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcE
Q 041265 88 SNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAV 167 (309)
Q Consensus 88 ~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~ 167 (309)
+|+.|+... .+.. .. ...++...++++||... +..++.+++.++++++++. ++|+
T Consensus 275 NNg~~~~~g----------~q~~--~~---------~~~d~~~iA~a~G~~~~--~~v~~~~eL~~al~~a~~~--~gp~ 329 (361)
T TIGR03297 275 NNGAHDSVG----------GQPT--VS---------QHLDFAQIAKACGYAKV--YEVSTLEELETALTAASSA--NGPR 329 (361)
T ss_pred cCccccccC----------CcCC--CC---------CCCCHHHHHHHCCCceE--EEeCCHHHHHHHHHHHHhC--CCcE
Confidence 665553211 0100 00 01233566899998532 2348999999999999876 8899
Q ss_pred EEEEEeeeccC
Q 041265 168 LIHVITEKEKA 178 (309)
Q Consensus 168 ~I~~~T~kg~G 178 (309)
+||+++.++..
T Consensus 330 lIeV~v~~g~~ 340 (361)
T TIGR03297 330 LIEVKVRPGSR 340 (361)
T ss_pred EEEEEecCCCc
Confidence 99999998765
No 82
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=98.99 E-value=2.5e-09 Score=108.88 Aligned_cols=132 Identities=19% Similarity=0.274 Sum_probs=93.6
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~ 95 (309)
.+-|++|.|+|+|+ |+++|. .+.+|+|++|||+++-. .-.|..|..++.|++ +|.+|+.|+.+
T Consensus 405 ~~~gsmG~~~paAi----------Ga~la~----p~~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~~~g~i 468 (578)
T PRK06546 405 FRHGSMANALPHAI----------GAQLAD----PGRQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNSTLGMV 468 (578)
T ss_pred CCcccccchhHHHH----------HHHHhC----CCCcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECCccccH
Confidence 34588999999999 999984 46789999999999863 335778999997765 55777778766
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
+.... ..+......+ .-..++..+.++||.+.. +|+ +.++|.++++++.+. ++|++|+++|.+
T Consensus 469 ~~~q~-------~~~~~~~~~~-----~~~~df~~lA~a~G~~~~-~v~--~~~el~~al~~a~~~--~gp~lIev~~~~ 531 (578)
T PRK06546 469 KLEML-------VDGLPDFGTD-----HPPVDYAAIAAALGIHAV-RVE--DPKDVRGALREAFAH--PGPALVDVVTDP 531 (578)
T ss_pred HHHHH-------hcCCCccccc-----CCCCCHHHHHHHCCCeeE-EeC--CHHHHHHHHHHHHhC--CCCEEEEEEeCC
Confidence 43320 0010000000 002344667899999988 775 899999999999876 889999999976
Q ss_pred cc-CCch
Q 041265 176 EK-AMLP 181 (309)
Q Consensus 176 g~-G~~~ 181 (309)
.. .+++
T Consensus 532 ~~~~~~~ 538 (578)
T PRK06546 532 NALSIPP 538 (578)
T ss_pred CcccCCC
Confidence 54 3344
No 83
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=98.96 E-value=3.2e-09 Score=96.39 Aligned_cols=135 Identities=16% Similarity=0.231 Sum_probs=88.1
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEE-EEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKR-LHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~-i~~nn~~~~~~ 96 (309)
+.|++|.|||.|+ |.+++ ..+.+|||++|||++ -.+....|..|..++.|+++ |.+|..|+...
T Consensus 60 ~~gsmG~GlpaAi----------Ga~~a----~p~r~VV~i~GDG~~-~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg 124 (235)
T cd03376 60 NAAAVASGIEAAL----------KALGR----GKDITVVAFAGDGGT-ADIGFQALSGAAERGHDILYICYDNEAYMNTG 124 (235)
T ss_pred CHHHHHHHHHHHH----------HHhcc----CCCCeEEEEEcCchH-HhhHHHHHHHHHHcCCCeEEEEECCcccccCC
Confidence 4578888888888 76554 356789999999995 33556778889999977765 56666676321
Q ss_pred hhhhcccchhhccCCcccchhhh-H---Hhh-hcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAF-S---REI-EAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
.+ +......+.... .... . ... -.+++...++++|++++.+++-.+.+++.++++++.+. ++|++||+
T Consensus 125 -~q---~~~~~~~~~~~~-~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~--~gP~lIev 197 (235)
T cd03376 125 -IQ---RSGSTPYGAWTT-TTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALSI--EGPAYIHI 197 (235)
T ss_pred -CC---CCCCCCCCCEee-cCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhC--CCCEEEEE
Confidence 11 100000010000 0000 0 000 11355678899999987546678999999999999876 88999999
Q ss_pred Eee
Q 041265 172 ITE 174 (309)
Q Consensus 172 ~T~ 174 (309)
.+.
T Consensus 198 ~~~ 200 (235)
T cd03376 198 LSP 200 (235)
T ss_pred ECC
Confidence 985
No 84
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=98.95 E-value=3.4e-09 Score=107.86 Aligned_cols=126 Identities=21% Similarity=0.264 Sum_probs=88.8
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEE-EeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRL-HSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i-~~nn~~~~~~~ 97 (309)
.|++|.++|.|+ |+++| ..+.+|||++|||+++ +.++.|+.|..++.|+++| .+|+.|+....
T Consensus 436 ~gsmG~~l~~ai----------Ga~la----~~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~ 499 (578)
T PRK06112 436 LAGLGWGVPMAI----------GAKVA----RPGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKH 499 (578)
T ss_pred ccccccHHHHHH----------HHHhh----CCCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEe
Confidence 478999999999 99887 3467899999999995 7789999999999887655 55554543321
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
.. + ...+...... ++ -..++..+.++||+++. .| ++.+++.++++++.+. ++|++||++|.+.
T Consensus 500 ~~---~---~~~~~~~~~~-~~----~~~d~~~~A~a~G~~~~-~v--~~~~el~~al~~a~~~--~gp~lIev~~~~~ 562 (578)
T PRK06112 500 AE---T---VKFGTHTDAC-HF----AAVDHAAIARACGCDGV-RV--EDPAELAQALAAAMAA--PGPTLIEVITDPS 562 (578)
T ss_pred cc---c---cccCCccccC-cC----CCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHHHHhC--CCCEEEEEEcCcc
Confidence 11 0 0011100000 00 01344667899999998 66 4799999999999876 8899999999754
No 85
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=98.94 E-value=3.3e-09 Score=88.92 Aligned_cols=96 Identities=24% Similarity=0.254 Sum_probs=83.3
Q ss_pred hCCCceeeccchHHHHHHHHHHHhhCCCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhH
Q 041265 210 HFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFD 288 (309)
Q Consensus 210 ~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d 288 (309)
+.|++.+..++.|++++++|.|+++.|.+|++. ++.+++.+++++|.+ +...+.||+++.+..+..+..+.+||..++
T Consensus 32 ~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~~-a~~~~~Pvl~i~~~~~~~~~~~~~~q~~~~ 110 (154)
T cd06586 32 EGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLAD-AAAEHLPVVFLIGARGISAQAKQTFQSMFD 110 (154)
T ss_pred ccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHHH-HHhcCCCEEEEeCCCChhhhccCcccccCH
Confidence 457899999999999999999999987788886 569999999999995 468899999999877764445677999999
Q ss_pred HHHHhcCCCcEEEEeCCC
Q 041265 289 TTFMACLPNMVVMKDIKL 306 (309)
Q Consensus 289 ~~~~~~iP~~~v~~Ps~~ 306 (309)
+.+++.+|++.+..|++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~ 128 (154)
T cd06586 111 LGMYRSIPEANISSPSPA 128 (154)
T ss_pred HHHHHHhhheEEEeCCHH
Confidence 999999999999988653
No 86
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=98.93 E-value=5e-09 Score=92.30 Aligned_cols=134 Identities=13% Similarity=0.135 Sum_probs=86.2
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~ 97 (309)
.|.+|.++|+|+ |.++| ..+.+||+++|||++- .+....|..|..++.|++ +|.+|+.|+.++.
T Consensus 50 ~g~mG~glpaAi----------Ga~la----~p~r~Vv~i~GDGs~f-~m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~ 114 (193)
T cd03375 50 HTLHGRALAVAT----------GVKLA----NPDLTVIVVSGDGDLA-AIGGNHFIHAARRNIDITVIVHNNQIYGLTKG 114 (193)
T ss_pred hhhhccHHHHHH----------HHHHh----CCCCeEEEEeccchHh-hccHHHHHHHHHhCCCeEEEEEcCcccccCCC
Confidence 377899999999 98887 3577899999999941 333455667778887766 5678878876543
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
.. .... ..+.... ........-..++....+++|.+++.++.-.+.+++.++++++.+. ++|++|++.+.
T Consensus 115 ~~---~~~~-~~~~~~~-~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~~--~gp~vIev~~~ 184 (193)
T cd03375 115 QA---SPTT-PEGFKTK-TTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQH--KGFSFVEVLSP 184 (193)
T ss_pred cc---CCCC-CCCCccc-CCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHhc--CCCEEEEEECC
Confidence 22 0000 0000000 0000000001344667899999985333446899999999999876 88999999875
No 87
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=98.89 E-value=5.7e-09 Score=106.10 Aligned_cols=136 Identities=16% Similarity=0.142 Sum_probs=90.4
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEE-EEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKR-LHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~-i~~nn~~~~~~ 96 (309)
+.|++|.|+|+|+ |.+++ ..+.+|+|++|||+++.+..-++++.|..++.|+++ |.+|+.|+.++
T Consensus 428 ~~gsmG~~lp~ai----------Ga~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~ 493 (569)
T PRK08327 428 SAGGLGWALGAAL----------GAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVK 493 (569)
T ss_pred CCCCCCcchHHHH----------HHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccch
Confidence 4589999999999 98876 357889999999999998766689999999977765 56666887765
Q ss_pred hhhhcccchh-hccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEe
Q 041265 97 QEAFSSKDKK-QKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI--PDPGAVLIHVIT 173 (309)
Q Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~--~~~~P~~I~~~T 173 (309)
... +... ...+....+. ......-..++..+.+++|+.+. .|+ +.+++.++++++.+. ++++|++||+.+
T Consensus 494 ~~~---~~~~~~~~~~~~~~~-~~~~~~~~~d~~~la~a~G~~~~-~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 494 EAV---LEVYPEGYAARKGTF-PGTDFDPRPDFAKIAEAFGGYGE-RVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred hHH---hhhCccccccccccc-ccccCCCCCCHHHHHHhCCCCce-EeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 432 1000 0000000000 00000001345667899999988 665 999999998876532 126799999987
Q ss_pred e
Q 041265 174 E 174 (309)
Q Consensus 174 ~ 174 (309)
.
T Consensus 567 ~ 567 (569)
T PRK08327 567 D 567 (569)
T ss_pred c
Confidence 3
No 88
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.89 E-value=1.1e-08 Score=104.14 Aligned_cols=126 Identities=16% Similarity=0.199 Sum_probs=89.7
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEE-EEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKR-LHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~-i~~nn~~~~~~ 96 (309)
+-|++|.|+|.|+ |.++|. .+.+|+|++|||+++ +..-.|..|..++.|+++ |.+|+.|+.++
T Consensus 420 ~~gsmG~~lp~ai----------Ga~lA~----p~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~~~~~ 483 (570)
T PRK06725 420 GLGTMGFGFPAAI----------GAQLAK----EEELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFLGMVR 483 (570)
T ss_pred CcccccchhhHHH----------hhHhhc----CCCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCccHHHH
Confidence 3489999999999 999883 567899999999996 333447788888977764 56666776654
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
..+ .. ..+...... ++ -.+++..+.++||.+.. +| ++.+++.++++++++. ++|++|++.+.+
T Consensus 484 ~~q---~~---~~~~~~~~~-~~----~~~d~~~~a~a~G~~~~-~v--~~~~~l~~al~~a~~~--~~p~liev~id~ 546 (570)
T PRK06725 484 QWQ---EM---FYENRLSES-KI----GSPDFVKVAEAYGVKGL-RA--TNSTEAKQVMLEAFAH--EGPVVVDFCVEE 546 (570)
T ss_pred HHH---HH---hcCCccccC-cC----CCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHHHHhC--CCCEEEEEEeCC
Confidence 332 00 011111000 00 02345667899999998 66 5899999999999876 889999999964
No 89
>PRK08322 acetolactate synthase; Reviewed
Probab=98.87 E-value=1.3e-08 Score=102.85 Aligned_cols=129 Identities=14% Similarity=0.184 Sum_probs=92.4
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~ 95 (309)
.+.|.+|.+||.|+ |.+++. .+.+|++++|||+++ +..-.|-.|..++.|++ +|.+|++|+.+
T Consensus 403 ~~~g~mG~~lpaai----------Ga~la~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~ 466 (547)
T PRK08322 403 NALATMGAGLPSAI----------AAKLVH----PDRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNAYGMI 466 (547)
T ss_pred CCcccccchhHHHH----------HHHHhC----CCCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCCcchH
Confidence 34589999999999 999883 567899999999998 44455777888886654 66888888876
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
+..+ +. ...... .. ++ -.+++....++||+++. +| .+.+++.++++++.+. ++|++||+.|.+
T Consensus 467 ~~~~---~~---~~~~~~-~~-~~----~~~df~~lA~a~G~~~~-~v--~~~~eL~~al~~a~~~--~~p~lIev~v~~ 529 (547)
T PRK08322 467 RWKQ---EN---MGFEDF-GL-DF----GNPDFVKYAESYGAKGY-RV--ESADDLLPTLEEALAQ--PGVHVIDCPVDY 529 (547)
T ss_pred HHHH---Hh---hcCCcc-cc-cC----CCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHHHHhC--CCCEEEEEEecC
Confidence 5443 10 001000 00 00 02355677899999998 66 6899999999998876 889999999975
Q ss_pred ccC
Q 041265 176 EKA 178 (309)
Q Consensus 176 g~G 178 (309)
...
T Consensus 530 ~~~ 532 (547)
T PRK08322 530 SEN 532 (547)
T ss_pred ccC
Confidence 443
No 90
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=98.85 E-value=1.7e-08 Score=102.71 Aligned_cols=129 Identities=13% Similarity=0.195 Sum_probs=91.8
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.|+|.|+ |.+++. .+.+||+++|||+++-. ..| |..|..++.|++ +|.+|++|+.++
T Consensus 422 ~~g~mG~glpaAi----------Gaala~----p~~~vv~i~GDGsf~m~-~~e-L~ta~r~~lpi~ivV~NN~~~~~i~ 485 (571)
T PRK07710 422 GLGTMGFGLPAAI----------GAQLAK----PDETVVAIVGDGGFQMT-LQE-LSVIKELSLPVKVVILNNEALGMVR 485 (571)
T ss_pred CcccccchHHHHH----------HHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECchHHHHH
Confidence 3488999999999 999883 46789999999999853 344 889999997665 567888888776
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
... .. ..+..... .... -..++..+.++||.++. ++ ++.+++.++++++.+. ++|++||+.|.+.
T Consensus 486 ~~~---~~---~~~~~~~~-~~~~---~~~d~~~~A~a~G~~~~-~v--~~~~el~~al~~a~~~--~~p~lieV~vd~~ 550 (571)
T PRK07710 486 QWQ---EE---FYNQRYSH-SLLS---CQPDFVKLAEAYGIKGV-RI--DDELEAKEQLQHAIEL--QEPVVIDCRVLQS 550 (571)
T ss_pred HHH---HH---HhCCccee-ccCC---CCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhC--CCCEEEEEEecCc
Confidence 543 10 01100000 0000 01344667899999998 65 5789999999999876 8899999999754
Q ss_pred c
Q 041265 177 K 177 (309)
Q Consensus 177 ~ 177 (309)
.
T Consensus 551 ~ 551 (571)
T PRK07710 551 E 551 (571)
T ss_pred c
Confidence 3
No 91
>PRK08611 pyruvate oxidase; Provisional
Probab=98.84 E-value=1.8e-08 Score=102.68 Aligned_cols=126 Identities=14% Similarity=0.110 Sum_probs=91.9
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~ 97 (309)
-|++|.|||.|+ |.+++. .+..|+|++|||+++-. ...|..|..++.|++ +|.+|+.|+.++.
T Consensus 407 ~g~mG~glpaai----------Ga~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i~~ 470 (576)
T PRK08611 407 LGTMGCGLPGAI----------AAKIAF----PDRQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFIKY 470 (576)
T ss_pred chhhhhhHHHHH----------HHHHhC----CCCcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 589999999999 999873 46789999999999765 456677888887664 6678888887654
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeecc
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEK 177 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~ 177 (309)
.. .. . ...... ..+ -..++..+.++||.++. +| ++.++|.++|+++.+. ++|++||+.|.+..
T Consensus 471 ~q---~~--~-~~~~~~--~~~----~~~d~~~lA~a~G~~~~-~v--~~~~eL~~al~~a~~~--~~p~lIeV~vd~~~ 533 (576)
T PRK08611 471 EQ---QA--A-GELEYA--IDL----SDMDYAKFAEACGGKGY-RV--EKAEELDPAFEEALAQ--DKPVIIDVYVDPNA 533 (576)
T ss_pred HH---HH--h-cCCccc--ccC----CCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHHHHhC--CCCEEEEEEeCCcc
Confidence 32 10 0 000000 000 02355677899999988 55 7899999999999876 88999999997655
No 92
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=98.83 E-value=2.2e-08 Score=101.60 Aligned_cols=128 Identities=20% Similarity=0.275 Sum_probs=90.9
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.|+|.|+ |.++|. .+.+|+|++|||+++-. ..| |..|..++.|++ +|.+|+.|+.++
T Consensus 417 ~~g~mG~~lpaai----------Ga~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~ 480 (564)
T PRK08155 417 GLGTMGFGLPAAI----------GAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVH 480 (564)
T ss_pred CcccccchhHHHH----------HHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccH
Confidence 4489999999999 999884 46789999999999974 566 777888887776 456777788766
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
..+ +. +.+...... .+. -..++..+.++||.+++ .+ .+.+++.++++++.+. ++|++||+.+.+.
T Consensus 481 ~~q---~~---~~~~~~~~~-~~~---~~~d~~~~a~a~G~~~~-~v--~~~~el~~al~~a~~~--~~p~lIeV~~~~~ 545 (564)
T PRK08155 481 QQQ---SL---FYGQRVFAA-TYP---GKINFMQIAAGFGLETC-DL--NNEADPQAALQEAINR--PGPALIHVRIDAE 545 (564)
T ss_pred HHH---HH---hcCCCeeec-cCC---CCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHHHHhC--CCCEEEEEEeCCC
Confidence 543 10 011110000 000 01234567899999998 55 4799999999999876 8899999999643
No 93
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=98.83 E-value=1.7e-08 Score=102.23 Aligned_cols=127 Identities=12% Similarity=0.191 Sum_probs=91.9
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCC-CCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGK-NNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQL 95 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~-~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~ 95 (309)
+-|++|.|||.|+ |.+++. . +.+|+|++|||++.-. -..|..|..++.|++ +|.+|++|+.+
T Consensus 394 ~~g~mG~glpaai----------Ga~la~----p~~~~Vv~i~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~~~g~i 457 (549)
T PRK06457 394 WLGSMGIGVPGSV----------GASFAV----ENKRQVISFVGDGGFTMT--MMELITAKKYDLPVKIIIYNNSKLGMI 457 (549)
T ss_pred CcchhhhhHHHHH----------HHHhcC----CCCCeEEEEEcccHHhhh--HHHHHHHHHHCCCeEEEEEECCccchH
Confidence 3599999999999 999874 3 5789999999999654 355777888887765 56888889877
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
+... +. .+.+.... + ...+++....++||.++. +| .+.+++.++++++.+. ++|++|+++|.+
T Consensus 458 ~~~q---~~----~~~~~~~~-~----~~~~d~~~lA~a~G~~~~-~v--~~~~el~~al~~a~~~--~~p~lIeV~i~~ 520 (549)
T PRK06457 458 KFEQ---EV----MGYPEWGV-D----LYNPDFTKIAESIGFKGF-RL--EEPKEAEEIIEEFLNT--KGPAVLDAIVDP 520 (549)
T ss_pred HHHH---HH----hcCCcccc-c----CCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHHHHhC--CCCEEEEEEeCc
Confidence 5432 10 01000000 0 012345677899999998 66 5899999999999876 889999999975
Q ss_pred cc
Q 041265 176 EK 177 (309)
Q Consensus 176 g~ 177 (309)
..
T Consensus 521 ~~ 522 (549)
T PRK06457 521 NE 522 (549)
T ss_pred cc
Confidence 43
No 94
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=98.83 E-value=2.1e-08 Score=102.05 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=91.7
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
.-|++|.|||.|+ |.+++ ..+.+|++++|||+++-. .-.|..|..++.|++ +|.+|+.|+.+.
T Consensus 406 ~~gsmG~glpaAi----------Ga~la----~p~r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i~ 469 (575)
T TIGR02720 406 LFATMGVGVPGAI----------AAKLN----YPDRQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFIK 469 (575)
T ss_pred CcchhhchHHHHH----------HHHHh----CCCCcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHHH
Confidence 4589999999999 98887 346789999999999765 345788888887765 568888898765
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhh--cCCCCCcEEEEEEee
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVK--AIPDPGAVLIHVITE 174 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~--~~~~~~P~~I~~~T~ 174 (309)
..+ +. ........ ++ -..++..+.++||.+.. +| .+.+++.++++++. +. ++|++|++++.
T Consensus 470 ~~~---~~----~~~~~~~~-~~----~~~df~~iA~a~G~~~~-~v--~~~~el~~al~~a~~~~~--~~p~liev~i~ 532 (575)
T TIGR02720 470 DEQ---ED----TNQPLIGV-DF----NDADFAKIAEGVGAVGF-RV--NKIEQLPAVFEQAKAIKQ--GKPVLIDAKIT 532 (575)
T ss_pred HHH---HH----hCCCcccc-cC----CCCCHHHHHHHCCCEEE-Ee--CCHHHHHHHHHHHHhhCC--CCcEEEEEEeC
Confidence 442 10 01111100 00 02345678899999988 66 57899999999987 54 88999999998
Q ss_pred ecc
Q 041265 175 KEK 177 (309)
Q Consensus 175 kg~ 177 (309)
+-.
T Consensus 533 ~~~ 535 (575)
T TIGR02720 533 GDR 535 (575)
T ss_pred CCC
Confidence 754
No 95
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=98.83 E-value=1.7e-08 Score=102.61 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=90.6
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.+||.|+ |+++|. .+.+|+|++|||+++--. -.|..|..++.|++ +|.+|++|+.++
T Consensus 406 ~~G~mG~~lpaAi----------Ga~la~----p~r~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~i~ 469 (574)
T PRK09124 406 NHGSMANAMPQAL----------GAQAAH----PGRQVVALSGDGGFSMLM--GDFLSLVQLKLPVKIVVFNNSVLGFVA 469 (574)
T ss_pred CcccccchHHHHH----------HHHHhC----CCCeEEEEecCcHHhccH--HHHHHHHHhCCCeEEEEEeCCccccHH
Confidence 4588899999999 999873 467899999999996542 33667888887665 567777887764
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
... . ..+...... ++ -.+++..+.++||+++. +| .+.++|.++++++.+. ++|++|++.+.+.
T Consensus 470 ~~~---~----~~~~~~~~~-~~----~~~d~~~lA~a~G~~~~-~v--~~~~eL~~al~~a~~~--~~p~lIev~i~~~ 532 (574)
T PRK09124 470 MEM---K----AGGYLTDGT-DL----HNPDFAAIAEACGITGI-RV--EKASELDGALQRAFAH--DGPALVDVVTAKQ 532 (574)
T ss_pred HHH---H----hcCCccccC-cC----CCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHHHHhC--CCCEEEEEEecCc
Confidence 332 0 000000000 00 02345677899999998 66 5899999999999876 8899999999765
Q ss_pred cC
Q 041265 177 KA 178 (309)
Q Consensus 177 ~G 178 (309)
..
T Consensus 533 ~~ 534 (574)
T PRK09124 533 EL 534 (574)
T ss_pred cc
Confidence 53
No 96
>PRK07064 hypothetical protein; Provisional
Probab=98.82 E-value=2.1e-08 Score=101.33 Aligned_cols=124 Identities=18% Similarity=0.274 Sum_probs=89.3
Q ss_pred CCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhhh
Q 041265 20 GHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQE 98 (309)
Q Consensus 20 G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~~ 98 (309)
|++|.+||.|+ |.++|. .+..|++++|||+++-.. -.|..|..++.|++ +|.+|++|+.++..
T Consensus 405 g~mG~~lpaAi----------Ga~lA~----p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~ 468 (544)
T PRK07064 405 GGIGQGLAMAI----------GAALAG----PGRKTVGLVGDGGLMLNL--GELATAVQENANMVIVLMNDGGYGVIRNI 468 (544)
T ss_pred Cccccccchhh----------hhhhhC----cCCcEEEEEcchHhhhhH--HHHHHHHHhCCCeEEEEEeCChhHHHHHH
Confidence 78999999999 999883 467899999999996543 56777888887665 56788888876544
Q ss_pred hhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 99 AFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
. +. ..+...... + .-.+++....++||.++. .| .+.++|.++++++.+. ++|++||+.+..
T Consensus 469 ~---~~---~~~~~~~~~-~----~~~~d~~~lA~a~G~~~~-~v--~~~~eL~~al~~a~~~--~~p~lIeV~~~~ 529 (544)
T PRK07064 469 Q---DA---QYGGRRYYV-E----LHTPDFALLAASLGLPHW-RV--TSADDFEAVLREALAK--EGPVLVEVDMLS 529 (544)
T ss_pred H---HH---hcCCccccc-c----CCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHHHHcC--CCCEEEEEEccc
Confidence 3 10 001000000 0 012345667899999987 65 5899999999999875 889999999863
No 97
>PRK12474 hypothetical protein; Provisional
Probab=98.82 E-value=2.4e-08 Score=100.47 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=88.3
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcE-EEEEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKAL-KRLHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~L-i~i~~nn~~~~~~~ 97 (309)
.|++|.|||.|+ |.++|. .+.+|+|++|||+++ +..-.|..|..++.|+ ++|.+|++|+.++.
T Consensus 388 ~gsmG~glpaAi----------Ga~lA~----p~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~ 451 (518)
T PRK12474 388 GGSIGQGLPLAA----------GAAVAA----PDRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRSYAILNG 451 (518)
T ss_pred CCccCccHHHHH----------HHHHHC----CCCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCcchHHHH
Confidence 399999999999 999984 567899999999996 4446688888888665 56677778987653
Q ss_pred hhhcccchhhccCCcccchhhhHHhhh--cCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIE--AGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVIT 173 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T 173 (309)
.. ............. ... ... ..++..+.++||.+.. +| .+.++|.++++++.+. ++|++|++.+
T Consensus 452 ~~---~~~~~~~~~~~~~--~~~-~~~~~~~d~~~lA~a~G~~~~-rv--~~~~eL~~al~~a~~~--~~p~liev~~ 518 (518)
T PRK12474 452 EL---QRVGAQGAGRNAL--SML-DLHNPELNWMKIAEGLGVEAS-RA--TTAEEFSAQYAAAMAQ--RGPRLIEAMI 518 (518)
T ss_pred HH---HhhcCCCCCcccc--ccc-cCCCCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHHHHcC--CCCEEEEEEC
Confidence 32 0000000000000 000 000 1245678899999988 66 4799999999999876 8899999874
No 98
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=98.81 E-value=3.1e-08 Score=99.97 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=90.9
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~ 95 (309)
.+-|++|.|||.|+ |.++|. .+.+|||++|||+++-- .-.|..|..++.|++ +|.+|+.|+.+
T Consensus 405 ~~~g~mG~~lpaai----------Ga~la~----~~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~ 468 (539)
T TIGR02418 405 NGMQTLGVALPWAI----------GAALVR----PNTKVVSVSGDGGFLFS--SMELETAVRLKLNIVHIIWNDNGYNMV 468 (539)
T ss_pred CCccccccHHHHHH----------HHHHhC----CCCcEEEEEcchhhhch--HHHHHHHHHhCCCeEEEEEECCcchHH
Confidence 34579999999999 999884 46789999999999654 344677888887765 56777788776
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
+... +. ..+ ..... ++ -..++..+.++||.+.. +| .+.++|.++++++.+. ++|++|++.+.+
T Consensus 469 ~~~~---~~---~~~-~~~~~-~~----~~~d~~~lA~a~G~~~~-~V--~~~~eL~~al~~a~~~--~~p~lIev~v~~ 531 (539)
T TIGR02418 469 EFQE---EM---KYQ-RSSGV-DF----GPIDFVKYAESFGAKGL-RV--ESPDQLEPTLRQAMEV--EGPVVVDIPVDY 531 (539)
T ss_pred HHHH---HH---hcC-Ccccc-cC----CCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhC--CCCEEEEEEecC
Confidence 4322 10 001 00000 00 02345667899999988 55 5899999999999876 889999999975
Q ss_pred cc
Q 041265 176 EK 177 (309)
Q Consensus 176 g~ 177 (309)
..
T Consensus 532 ~~ 533 (539)
T TIGR02418 532 SD 533 (539)
T ss_pred cc
Confidence 43
No 99
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.81 E-value=1.8e-08 Score=101.89 Aligned_cols=127 Identities=21% Similarity=0.265 Sum_probs=94.2
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEE-EEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKR-LHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~-i~~nn~~~~~ 95 (309)
.+-|.+|.|||+|+ |.+++. .+..|+|++|||+++ +....|..|..++.|+++ |.+|+.|+.+
T Consensus 405 ~~~GtMG~glPaAI----------GAkla~----P~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~~g~v 468 (550)
T COG0028 405 GGLGTMGFGLPAAI----------GAKLAA----PDRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGGYGMV 468 (550)
T ss_pred CCCccccchHHHHH----------HHHhhC----CCCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCccccc
Confidence 46789999999999 888873 467899999999994 456778888888888765 5677778877
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCc-cchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGS-RACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
+..+ +... +...... + +... +..+.|+||.+.. +|+ +.+++.++|+++.+. ++|++|++.+.
T Consensus 469 ~~~q---~~~~---~~~~~~~-~-----~~~~~f~klAea~G~~g~-~v~--~~~el~~al~~al~~--~~p~lidv~id 531 (550)
T COG0028 469 RQWQ---ELFY---GGRYSGT-D-----LGNPDFVKLAEAYGAKGI-RVE--TPEELEEALEEALAS--DGPVLIDVVVD 531 (550)
T ss_pred hHHH---HHhc---CCCccee-e-----cCCccHHHHHHHcCCeeE-EeC--CHHHHHHHHHHHHhC--CCCEEEEEEec
Confidence 6665 1111 1000000 0 1111 4567899999998 777 999999999999987 88999999998
Q ss_pred ec
Q 041265 175 KE 176 (309)
Q Consensus 175 kg 176 (309)
+.
T Consensus 532 ~~ 533 (550)
T COG0028 532 PE 533 (550)
T ss_pred Cc
Confidence 66
No 100
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.80 E-value=2.6e-08 Score=101.15 Aligned_cols=129 Identities=18% Similarity=0.164 Sum_probs=91.5
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.|+|.|+ |.++|. .+..|+|++|||+++-. ..| |..|..++.|++ +|.+|+.|+.++
T Consensus 412 ~~g~mG~~l~~ai----------Ga~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~ 475 (563)
T PRK08527 412 GLGTMGYGLPAAL----------GAKLAV----PDKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMVR 475 (563)
T ss_pred CcccccchHHHHH----------HHHHhC----CCCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhHH
Confidence 3489999999999 999884 35679999999999864 355 788888897766 567777887765
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
..+ .. ..+...... ++. ...++..+.+++|.++. .| ++.+++.++|+++.+. ++|++||+.+.+.
T Consensus 476 ~~~---~~---~~~~~~~~~-~~~---~~~d~~~~a~a~G~~~~-~v--~~~~el~~al~~a~~~--~~p~lieV~v~~~ 540 (563)
T PRK08527 476 QWQ---TF---FYEERYSET-DLS---TQPDFVKLAESFGGIGF-RV--TTKEEFDKALKEALES--DKVALIDVKIDRF 540 (563)
T ss_pred HHH---Hh---hcCCceeec-cCC---CCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhC--CCCEEEEEEECCc
Confidence 432 00 011100000 000 01344667899999988 65 5899999999998876 8899999999864
Q ss_pred c
Q 041265 177 K 177 (309)
Q Consensus 177 ~ 177 (309)
.
T Consensus 541 ~ 541 (563)
T PRK08527 541 E 541 (563)
T ss_pred c
Confidence 4
No 101
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=98.80 E-value=2.3e-08 Score=102.61 Aligned_cols=130 Identities=15% Similarity=0.217 Sum_probs=91.3
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
.-|.+|.|+|.|+ |.++|. .+..|||++|||+++- ..-.|..|..++.|++ +|.+|+.|+.++
T Consensus 432 ~~g~mG~glpaAi----------GA~lA~----p~r~Vv~i~GDG~f~m--~~~eL~Ta~r~~lpvi~vV~NN~~~g~i~ 495 (616)
T PRK07418 432 GLGTMGFGMPAAM----------GVKVAL----PDEEVICIAGDASFLM--NIQELGTLAQYGINVKTVIINNGWQGMVR 495 (616)
T ss_pred CccccccHHHHHH----------HHHHhC----CCCcEEEEEcchHhhh--hHHHHHHHHHhCCCeEEEEEECCcchHHH
Confidence 4589999999999 999883 4678999999999974 4445777888887766 557777787765
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
..+ +. ..+...... .+. .-..++....+++|.+.. +| .+.++|.++|+++.+. ++|++|++++.+.
T Consensus 496 ~~q---~~---~~~~~~~~~-~~~--~~~~d~~~~A~a~G~~g~-~V--~~~~el~~al~~a~~~--~~p~lIeV~i~~~ 561 (616)
T PRK07418 496 QWQ---ES---FYGERYSAS-NME--PGMPDFVKLAEAFGVKGM-VI--SERDQLKDAIAEALAH--DGPVLIDVHVRRD 561 (616)
T ss_pred HHH---HH---hcCCCceee-cCC--CCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHHHHhC--CCCEEEEEEecCc
Confidence 443 10 001000000 000 001345667899999998 66 5899999999999876 8899999999753
Q ss_pred c
Q 041265 177 K 177 (309)
Q Consensus 177 ~ 177 (309)
.
T Consensus 562 ~ 562 (616)
T PRK07418 562 E 562 (616)
T ss_pred c
Confidence 3
No 102
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=98.79 E-value=3.2e-08 Score=101.04 Aligned_cols=135 Identities=19% Similarity=0.158 Sum_probs=91.0
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~ 97 (309)
-|++|.|||.|+ |.++|. .+.+||+++|||+++-. ...|..|..++.|++ +|.+|+.|+.++.
T Consensus 417 ~gsmG~glpaai----------Ga~lA~----pdr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~ 480 (588)
T TIGR01504 417 AGPLGWTIPAAL----------GVCAAD----PKRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNAYLGLIRQ 480 (588)
T ss_pred cccccchHhHHH----------hhhhhC----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHH
Confidence 488999999999 999884 56789999999999665 356778899997665 5678888987765
Q ss_pred hhhcccchhhcc--CCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhc----CCCCCcEEEEE
Q 041265 98 EAFSSKDKKQKF--GGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKA----IPDPGAVLIHV 171 (309)
Q Consensus 98 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~----~~~~~P~~I~~ 171 (309)
.+ ....... +................++..+.++||.+.. +| ++.++|.++|+++.+ . ++|++|++
T Consensus 481 ~q---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~-~V--~~~~eL~~al~~a~~~~~~~--~~p~lIeV 552 (588)
T TIGR01504 481 AQ---RAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAI-RV--FKPEEIAPAFEQAKALMAEH--RVPVVVEV 552 (588)
T ss_pred HH---HHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEE-EE--CCHHHHHHHHHHHHhhcccC--CCcEEEEE
Confidence 43 1000000 0000000000000001345678899999988 66 689999999998864 4 88999999
Q ss_pred Eeeecc
Q 041265 172 ITEKEK 177 (309)
Q Consensus 172 ~T~kg~ 177 (309)
++.+-.
T Consensus 553 ~i~~~~ 558 (588)
T TIGR01504 553 ILERVT 558 (588)
T ss_pred Eecccc
Confidence 996543
No 103
>PRK07586 hypothetical protein; Validated
Probab=98.78 E-value=3.8e-08 Score=98.79 Aligned_cols=128 Identities=18% Similarity=0.174 Sum_probs=88.6
Q ss_pred CCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhhh
Q 041265 20 GHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQE 98 (309)
Q Consensus 20 G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~~ 98 (309)
|++|.|||.|+ |.++|. .+.+|+|++|||+++- ....|..|..++.|++ +|.+|+.|+.++..
T Consensus 385 g~mG~~lpaai----------Ga~lA~----p~r~Vv~i~GDGsf~m--~~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~ 448 (514)
T PRK07586 385 GAIGQGLPLAT----------GAAVAC----PDRKVLALQGDGSAMY--TIQALWTQARENLDVTTVIFANRAYAILRGE 448 (514)
T ss_pred cccccHHHHHH----------HHHHhC----CCCeEEEEEechHHHh--HHHHHHHHHHcCCCCEEEEEeCchhHHHHHH
Confidence 89999999999 999984 4678999999999864 4567788888887754 56788889877643
Q ss_pred hhcccchhhccCCcccchhhhHHhh-hcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 041265 99 AFSSKDKKQKFGGQMHEIDAFSREI-EAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVIT 173 (309)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T 173 (309)
. +.......+... ....... -..++..+.++||++.. +| .+.+++.++++++.+. ++|++|++.+
T Consensus 449 ~---~~~~~~~~~~~~--~~~~~~~~~~~d~~~lA~a~G~~~~-~V--~~~~el~~al~~a~~~--~~p~liev~~ 514 (514)
T PRK07586 449 L---ARVGAGNPGPRA--LDMLDLDDPDLDWVALAEGMGVPAR-RV--TTAEEFADALAAALAE--PGPHLIEAVV 514 (514)
T ss_pred H---HHhcCCCCCccc--cccccCCCCCCCHHHHHHHCCCcEE-Ee--CCHHHHHHHHHHHHcC--CCCEEEEEEC
Confidence 3 100000000000 0000000 01345678899999988 66 5799999999999876 8899999874
No 104
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.77 E-value=4e-08 Score=99.92 Aligned_cols=130 Identities=16% Similarity=0.186 Sum_probs=91.4
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+.|.+|.+||.|+ |+++|. .+.+|||++|||+++-. ...|..|..++.|++ +|.+|++|+.++
T Consensus 419 ~~g~mG~~lp~ai----------Ga~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~i~ 482 (574)
T PRK06882 419 GAGTMGFGLPAAI----------GVKFAH----PEATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGMVK 482 (574)
T ss_pred CcccccchhHHHH----------HHHhhc----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHHHH
Confidence 4588999999999 999984 46689999999999665 588889999997776 456777787665
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
..+ .. ..++.... ..+. -.+++..+.++||.+.. +| ++.++|.++++++.+.. ++|++||+.+.+.
T Consensus 483 ~~q---~~---~~~~~~~~-~~~~---~~~d~~~la~a~G~~~~-~v--~~~~eL~~al~~a~~~~-~~p~liev~i~~~ 548 (574)
T PRK06882 483 QWQ---DL---IYSGRHSQ-VYMN---SLPDFAKLAEAYGHVGI-QI--DTPDELEEKLTQAFSIK-DKLVFVDVNVDET 548 (574)
T ss_pred HHH---HH---hcCCcccc-cCCC---CCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHHHHhcC-CCcEEEEEEecCc
Confidence 443 10 00110000 0000 01344667899999998 65 68999999999987632 6799999999754
Q ss_pred c
Q 041265 177 K 177 (309)
Q Consensus 177 ~ 177 (309)
.
T Consensus 549 ~ 549 (574)
T PRK06882 549 E 549 (574)
T ss_pred c
Confidence 4
No 105
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.77 E-value=3.3e-08 Score=101.07 Aligned_cols=128 Identities=15% Similarity=0.197 Sum_probs=91.5
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.|||.|+ |.++|. .+..|||++|||+++-.. -.|-.|..++.|++ +|.+|+.|+.++
T Consensus 428 ~~gsmG~glpaai----------Ga~lA~----p~r~Vv~i~GDG~f~m~~--~EL~Ta~r~~lpvi~vV~NN~~y~~i~ 491 (595)
T PRK09107 428 GLGTMGYGLPAAL----------GVQIAH----PDALVIDIAGDASIQMCI--QEMSTAVQYNLPVKIFILNNQYMGMVR 491 (595)
T ss_pred CchhhhhhHHHHH----------HHHHhC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEeCCccHHHH
Confidence 3488999999999 999883 467899999999996553 45788888897765 567777888776
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
..+ .. ..+...... ... ..+++....++||.+.. +| .+.++|.++|+++.+. ++|++|++.+.+-
T Consensus 492 ~~q---~~---~~~~~~~~~--~~~--~~~d~~~lA~a~G~~~~-~v--~~~~el~~al~~a~~~--~~p~lIeV~i~~~ 556 (595)
T PRK09107 492 QWQ---QL---LHGNRLSHS--YTE--AMPDFVKLAEAYGAVGI-RC--EKPGDLDDAIQEMIDV--DKPVIFDCRVANL 556 (595)
T ss_pred HHH---HH---HhCCccccc--cCC--CCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhC--CCCEEEEEEecCc
Confidence 443 10 011110000 000 01345667899999988 66 6899999999999876 8899999999753
No 106
>PRK08617 acetolactate synthase; Reviewed
Probab=98.76 E-value=4.7e-08 Score=98.98 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=90.2
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+.|.+|.|||.|+ |.+++. .+..|+|++|||+++-. --.|..|..++.|++ +|.+|+.|+.++
T Consensus 412 ~~g~mG~~lpaai----------Ga~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~~~~~ 475 (552)
T PRK08617 412 GMQTLGVALPWAI----------AAALVR----PGKKVVSVSGDGGFLFS--AMELETAVRLKLNIVHIIWNDGHYNMVE 475 (552)
T ss_pred ccccccccccHHH----------hhHhhc----CCCcEEEEEechHHhhh--HHHHHHHHHhCCCeEEEEEECCccchHH
Confidence 4578999999999 998873 46789999999999744 455677888887765 667888887665
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
... +. ... ..... ++ -..++....++||.++. +| ++.++|.++|+++.+. ++|++|++.+.+.
T Consensus 476 ~~~---~~---~~~-~~~~~-~~----~~~d~~~lA~a~G~~~~-~v--~~~~eL~~al~~a~~~--~~p~liev~~~~~ 538 (552)
T PRK08617 476 FQE---EM---KYG-RSSGV-DF----GPVDFVKYAESFGAKGL-RV--TSPDELEPVLREALAT--DGPVVIDIPVDYS 538 (552)
T ss_pred HHH---Hh---hcC-CcccC-CC----CCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhC--CCcEEEEEEeccc
Confidence 332 10 000 00000 00 01344667899999988 54 6899999999999866 7899999999754
Q ss_pred c
Q 041265 177 K 177 (309)
Q Consensus 177 ~ 177 (309)
.
T Consensus 539 ~ 539 (552)
T PRK08617 539 D 539 (552)
T ss_pred c
Confidence 4
No 107
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=98.76 E-value=4.3e-08 Score=100.04 Aligned_cols=129 Identities=19% Similarity=0.224 Sum_probs=90.6
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~ 95 (309)
.+-|++|.|+|.|+ |.++|. ++.+|+|++|||+++ +..-.|..|..++.|++ +|.+|+.|+.+
T Consensus 427 ~~~g~mG~glpaai----------Gaala~----p~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~y~~i 490 (585)
T CHL00099 427 AGLGTMGYGLPAAI----------GAQIAH----PNELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKWQGMV 490 (585)
T ss_pred ccccchhhhHHHHH----------HHHHhC----CCCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCcchHH
Confidence 34589999999999 999884 467899999999996 44456777888887765 55677778776
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
+..+ +. ..+...... ... .-.+++..+.++||.+.. .| .+.+++.++++++++. ++|.+||++|..
T Consensus 491 ~~~q---~~---~~~~~~~~~-~~~--~~~~d~~~la~a~G~~~~-~v--~~~~el~~al~~a~~~--~~p~liev~v~~ 556 (585)
T CHL00099 491 RQWQ---QA---FYGERYSHS-NME--EGAPDFVKLAEAYGIKGL-RI--KSRKDLKSSLKEALDY--DGPVLIDCQVIE 556 (585)
T ss_pred HHHH---HH---hcCCCcccc-cCC--CCCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHHHHhC--CCCEEEEEEECC
Confidence 5443 10 011110000 000 001344667899999988 66 5799999999999876 889999999974
No 108
>PRK05858 hypothetical protein; Provisional
Probab=98.76 E-value=5.3e-08 Score=98.47 Aligned_cols=128 Identities=15% Similarity=0.073 Sum_probs=89.9
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.|||.++ |.++|. .+.+|||++|||+++-. .-.|..|..++.|++ +|.+|+.|+..+
T Consensus 405 ~~gsmG~~lp~ai----------Ga~la~----p~r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~ 468 (542)
T PRK05858 405 PFGCLGTGPGYAL----------AARLAR----PSRQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNGIWGLEK 468 (542)
T ss_pred CccccccchhHHH----------HHHHhC----CCCcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCCchhhHH
Confidence 3479999999999 998874 56789999999999744 345677778887665 567777887654
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
... . ...+.... .+.. -..++....++||..+. +| .+.++|.++++++.+. ++|++|++.|.+.
T Consensus 469 ~~~---~---~~~~~~~~--~~~~---~~~d~~~lA~a~G~~~~-~v--~~~~eL~~al~~a~~~--~~p~lIev~~~~~ 532 (542)
T PRK05858 469 HPM---E---ALYGYDVA--ADLR---PGTRYDEVVRALGGHGE-LV--TVPAELGPALERAFAS--GVPYLVNVLTDPS 532 (542)
T ss_pred HHH---H---HhcCCccc--cccC---CCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHHHHhC--CCcEEEEEEECCC
Confidence 332 0 00111000 0000 01345667899999987 66 5899999999998876 8899999999765
Q ss_pred c
Q 041265 177 K 177 (309)
Q Consensus 177 ~ 177 (309)
.
T Consensus 533 ~ 533 (542)
T PRK05858 533 V 533 (542)
T ss_pred c
Confidence 4
No 109
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=98.76 E-value=5.2e-08 Score=98.60 Aligned_cols=128 Identities=17% Similarity=0.242 Sum_probs=91.0
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~ 97 (309)
-|++|.|||.|+ |.+++. .+..|+|++|||+++-.. -.|..|..++.|++ +|.+|++|+.++.
T Consensus 400 ~g~mG~glpaAi----------Ga~la~----p~~~vv~i~GDG~f~~~~--~eL~ta~~~~l~v~ivV~NN~~~~~~~~ 463 (548)
T PRK08978 400 LGTMGFGLPAAI----------GAQVAR----PDDTVICVSGDGSFMMNV--QELGTIKRKQLPVKIVLLDNQRLGMVRQ 463 (548)
T ss_pred hhhhhchHHHHH----------HHHHhC----CCCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEEeCCccHHHHH
Confidence 488999999999 999883 467899999999996553 44777788887765 5678888877654
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeecc
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEK 177 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~ 177 (309)
.. +. ..+...... ... -..++..+.++||.++. +| .+.++|.++++++.+. ++|++||+.+.+..
T Consensus 464 ~~---~~---~~~~~~~~~-~~~---~~~d~~~la~a~G~~~~-~v--~~~~el~~al~~a~~~--~~p~lIeV~id~~~ 528 (548)
T PRK08978 464 WQ---QL---FFDERYSET-DLS---DNPDFVMLASAFGIPGQ-TI--TRKDQVEAALDTLLNS--EGPYLLHVSIDELE 528 (548)
T ss_pred HH---HH---HhCCcceec-CCC---CCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhC--CCCEEEEEEecCcc
Confidence 43 10 011100000 000 01345667899999998 65 6899999999999876 88999999997543
No 110
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=98.75 E-value=3.5e-08 Score=100.06 Aligned_cols=128 Identities=17% Similarity=0.232 Sum_probs=88.9
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~ 97 (309)
-|++|.++|.|+ |.+++. .+.+|+|++|||+++-.. . .|..|..++.|++ +|.+|+.|+.+..
T Consensus 411 ~g~mG~~l~aai----------Ga~la~----~~~~vv~~~GDG~f~~~~-~-eL~ta~~~~l~~~~vv~NN~~~~~~~~ 474 (558)
T TIGR00118 411 LGTMGFGLPAAI----------GAKVAK----PESTVICITGDGSFQMNL-Q-ELSTAVQYDIPVKILILNNRYLGMVRQ 474 (558)
T ss_pred cccccchhhHHH----------hhhhhC----CCCcEEEEEcchHHhccH-H-HHHHHHHhCCCeEEEEEeCCchHHHHH
Confidence 378999999999 998873 467899999999998743 3 5778888997765 4566667765543
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeecc
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEK 177 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~ 177 (309)
.+ + ...+...... ... -..++..+.++||.++. .|+ +.+++.++++++.+. ++|++||+++.+..
T Consensus 475 ~q---~---~~~~~~~~~~-~~~---~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al~~a~~~--~~p~liev~~~~~~ 539 (558)
T TIGR00118 475 WQ---E---LFYEERYSHT-HMG---SLPDFVKLAEAYGIKGI-RIE--KPEELDEKLKEALSS--NEPVLLDVVVDKPE 539 (558)
T ss_pred HH---H---HhcCCceeec-cCC---CCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHhC--CCCEEEEEEeCCcc
Confidence 32 0 0011000000 000 01345667899999998 654 589999999998876 88999999997543
No 111
>PLN02470 acetolactate synthase
Probab=98.75 E-value=5.5e-08 Score=99.24 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=91.3
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.|||.|+ |.++|. .+..|+|++|||+++-.. -.|..|..++.|++ +|.+|+.|+.++
T Consensus 424 ~~g~mG~glpaai----------Ga~la~----p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~v~ivV~NN~~yg~i~ 487 (585)
T PLN02470 424 GLGAMGFGLPAAI----------GAAAAN----PDAIVVDIDGDGSFIMNI--QELATIHVENLPVKIMVLNNQHLGMVV 487 (585)
T ss_pred ccccccchHHHHH----------HHHHhC----CCCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEEeCCcchHHH
Confidence 3489999999999 999884 467899999999996553 56777888886654 567888887765
Q ss_pred hhhhcccchhhccCCcccch--hhh-HHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 041265 97 QEAFSSKDKKQKFGGQMHEI--DAF-SREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVIT 173 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T 173 (309)
... +. ..+...... ... ......+++....++||.+.. +| ++.++|.++++++.+. ++|++||+.+
T Consensus 488 ~~~---~~---~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~-~v--~~~~el~~al~~a~~~--~~p~lieV~i 556 (585)
T PLN02470 488 QWE---DR---FYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAA-RV--TRKSDLREAIQKMLDT--PGPYLLDVIV 556 (585)
T ss_pred HHH---HH---HhCCceeeeecCccccccCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhC--CCCEEEEEEe
Confidence 443 10 000000000 000 000001345677899999987 55 6899999999999876 8899999999
Q ss_pred eecc
Q 041265 174 EKEK 177 (309)
Q Consensus 174 ~kg~ 177 (309)
.+..
T Consensus 557 ~~~~ 560 (585)
T PLN02470 557 PHQE 560 (585)
T ss_pred CCcc
Confidence 7543
No 112
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=98.74 E-value=6.1e-08 Score=99.15 Aligned_cols=130 Identities=19% Similarity=0.202 Sum_probs=87.7
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhc-----cCcEE-EEEeCcch
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVL-----NKALK-RLHSNPQF 92 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~-----~~~Li-~i~~nn~~ 92 (309)
-|++|.|||.|+ |.++|. .+.+|+|++|||+++-....| |..|..+ +.|++ +|.+|+.|
T Consensus 414 ~g~mG~glpaai----------Ga~la~----p~~~Vv~i~GDG~f~m~~~~E-L~Ta~r~~~~~~~lpviivV~NN~~~ 478 (597)
T PRK08273 414 LATMGPAVPYAI----------AAKFAH----PDRPVIALVGDGAMQMNGMAE-LITVAKYWRQWSDPRLIVLVLNNRDL 478 (597)
T ss_pred cccccchHHHHH----------HHHHhC----CCCcEEEEEcchhHhccchHH-HHHHHHHhhcccCCCEEEEEEeCCcc
Confidence 379999999999 999884 467899999999995442233 4455555 66665 55777788
Q ss_pred hhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEE
Q 041265 93 RQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVI 172 (309)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~ 172 (309)
+.++..+ .. ..+....... . ..-..++..+.++||+.+. +| .+.++|.++|+++.+. ++|++|++.
T Consensus 479 ~~i~~~q---~~---~~~~~~~~~~--~-~~~~~d~~~lA~a~G~~~~-~v--~~~~eL~~al~~a~~~--~~p~lIeV~ 544 (597)
T PRK08273 479 NQVTWEQ---RV---MEGDPKFEAS--Q-DLPDVPYARFAELLGLKGI-RV--DDPEQLGAAWDEALAA--DRPVVLEVK 544 (597)
T ss_pred hHHHHHH---HH---hcCCCccccc--c-cCCCCCHHHHHHHCCCEEE-EE--CCHHHHHHHHHHHHhC--CCCEEEEEE
Confidence 7765443 10 0111100000 0 0001234667899999998 65 5899999999999876 889999999
Q ss_pred eeecc
Q 041265 173 TEKEK 177 (309)
Q Consensus 173 T~kg~ 177 (309)
|.+..
T Consensus 545 ~~~~~ 549 (597)
T PRK08273 545 TDPNV 549 (597)
T ss_pred eCCCC
Confidence 97544
No 113
>PRK06154 hypothetical protein; Provisional
Probab=98.74 E-value=4.7e-08 Score=99.37 Aligned_cols=127 Identities=17% Similarity=0.094 Sum_probs=89.6
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
.-|++|.|+|.|+ |.++|. .+..|||++|||+++-. ...|..|..++.|++ +|.+|+.|+.+.
T Consensus 429 ~~gsmG~glpaai----------Ga~la~----p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~yg~~~ 492 (565)
T PRK06154 429 KTTQLGYGLGLAM----------GAKLAR----PDALVINLWGDAAFGMT--GMDFETAVRERIPILTILLNNFSMGGYD 492 (565)
T ss_pred CCcccccHHHHHH----------HHHHhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECCccceee
Confidence 3588999999999 999883 56789999999999544 456888999997765 556777786543
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC-CCCCcEEEEEEeee
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI-PDPGAVLIHVITEK 175 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~-~~~~P~~I~~~T~k 175 (309)
... .. ....... .+ ..+++..+.++||.+.. +|+ +.++|.++|+++.+. ..++|++|++.|.+
T Consensus 493 ~~~---~~----~~~~~~~-~~-----~~~df~~lA~a~G~~g~-~V~--~~~el~~al~~a~~~~~~~~p~lIev~v~~ 556 (565)
T PRK06154 493 KVM---PV----STTKYRA-TD-----ISGDYAAIARALGGYGE-RVE--DPEMLVPALLRALRKVKEGTPALLEVITSE 556 (565)
T ss_pred hhh---hh----hcCcccc-cC-----CCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHhhccCCCeEEEEEEeCh
Confidence 322 00 0000000 00 12355678899999998 664 899999999998741 12779999999865
Q ss_pred c
Q 041265 176 E 176 (309)
Q Consensus 176 g 176 (309)
.
T Consensus 557 ~ 557 (565)
T PRK06154 557 E 557 (565)
T ss_pred H
Confidence 4
No 114
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.74 E-value=5e-08 Score=99.58 Aligned_cols=130 Identities=12% Similarity=0.194 Sum_probs=91.1
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.|||.|+ |.++|. .+..|||++|||+++-. .-.|..|..++.|++ +|.+|+.|+.++
T Consensus 435 ~~gsmG~glpaai----------Ga~lA~----p~r~Vv~i~GDGsf~m~--~~eL~Ta~r~~lpviivV~NN~~~~~i~ 498 (587)
T PRK06965 435 GLGTMGVGLPYAM----------GIKMAH----PDDDVVCITGEGSIQMC--IQELSTCLQYDTPVKIISLNNRYLGMVR 498 (587)
T ss_pred CcccccchHHHHH----------HHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCeEEEEEECCcchHHH
Confidence 4479999999999 999984 46789999999999654 466778888887765 567777787765
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
..+ .. ..+...... ... ..+++..+.++||.+.. .| .+.++|.++|+++.+.. ++|++|++.+.+.
T Consensus 499 ~~q---~~---~~~~~~~~~--~~~--~~~d~~~iA~a~G~~~~-~v--~~~~eL~~al~~a~~~~-~~p~lieV~i~~~ 564 (587)
T PRK06965 499 QWQ---EI---EYSKRYSHS--YMD--ALPDFVKLAEAYGHVGM-RI--EKTSDVEPALREALRLK-DRTVFLDFQTDPT 564 (587)
T ss_pred HHH---HH---hcCCCcccc--CCC--CCCCHHHHHHHCCCEEE-EE--CCHHHHHHHHHHHHhcC-CCcEEEEEEeccc
Confidence 443 10 011111000 000 01355677899999988 55 68999999999987521 6799999999754
Q ss_pred c
Q 041265 177 K 177 (309)
Q Consensus 177 ~ 177 (309)
.
T Consensus 565 ~ 565 (587)
T PRK06965 565 E 565 (587)
T ss_pred c
Confidence 3
No 115
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=98.73 E-value=5.8e-08 Score=98.54 Aligned_cols=126 Identities=16% Similarity=0.173 Sum_probs=89.3
Q ss_pred CCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhhh
Q 041265 20 GHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQE 98 (309)
Q Consensus 20 G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~~ 98 (309)
|++|.|+|.|+ |.++|. .+.+|+|++|||+++-.. =.|..|..++.|++ +|.+|+.|+.++..
T Consensus 414 g~mG~glpaai----------Ga~la~----p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~ 477 (561)
T PRK06048 414 GTMGYGFPAAI----------GAKVGK----PDKTVIDIAGDGSFQMNS--QELATAVQNDIPVIVAILNNGYLGMVRQW 477 (561)
T ss_pred cccccHHHHHH----------HHHHhC----CCCcEEEEEeCchhhccH--HHHHHHHHcCCCeEEEEEECCccHHHHHH
Confidence 79999999999 999883 467899999999996553 45777888886654 56788888776544
Q ss_pred hhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 99 AFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
+ +. ..+...... .+. -..++....++||.++. +| .+.+++.++|+++.+. ++|++||+.+.+.
T Consensus 478 ~---~~---~~~~~~~~~-~~~---~~~d~~~lA~a~G~~~~-~v--~t~~el~~al~~a~~~--~~p~liev~~~~~ 540 (561)
T PRK06048 478 Q---EL---FYDKRYSHT-CIK---GSVDFVKLAEAYGALGL-RV--EKPSEVRPAIEEAVAS--DRPVVIDFIVECE 540 (561)
T ss_pred H---HH---HcCCccccc-CCC---CCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhC--CCCEEEEEEecCc
Confidence 3 10 011000000 000 01345667899999988 55 6899999999999876 8899999999753
No 116
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=98.72 E-value=3e-08 Score=100.65 Aligned_cols=126 Identities=14% Similarity=0.106 Sum_probs=84.7
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~ 97 (309)
.|.+|.+||.|+ |.+++ .+.+|+|++|||+++-.. -.|..|..++.|++ +|.+|++|+....
T Consensus 424 ~~~~G~~lpaai----------Gaala-----~~~~vv~i~GDGsf~~~~--~eL~Ta~r~~l~i~ivVlNN~g~~~~~~ 486 (568)
T PRK07449 424 ASGIDGLLSTAA----------GVARA-----SAKPTVALIGDLSFLHDL--NGLLLLKQVPAPLTIVVVNNNGGGIFSL 486 (568)
T ss_pred ccchhhHHHHHH----------HHHhc-----CCCCEEEEechHHhhcCc--HHHHhhcccCCCeEEEEEECCCCccccC
Confidence 477999999999 99987 256799999999998542 33555778886665 5677777753211
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
.. . .++. . . ..++....-..++..+.++||+++. +| ++.++|.++++++.+. ++|++|++.|.+
T Consensus 487 ~~----~-~~~~--~-~-~~~~~~~~~~~df~~lA~a~G~~~~-~V--~~~~eL~~al~~a~~~--~~p~lIev~id~ 550 (568)
T PRK07449 487 LP----Q-PEEE--P-V-FERFFGTPHGVDFAHAAAMYGLEYH-RP--ETWAELEEALADALPT--PGLTVIEVKTNR 550 (568)
T ss_pred CC----C-CCCc--c-h-hhHhhcCCCCCCHHHHHHHcCCCcc-CC--CCHHHHHHHHHHHhcC--CCCEEEEEeCCh
Confidence 10 0 0000 0 0 0011000012355678899999987 65 6899999999999865 889999999964
No 117
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=98.71 E-value=7e-08 Score=98.13 Aligned_cols=128 Identities=18% Similarity=0.215 Sum_probs=91.1
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.|||.|+ |.+++. .+.+||+++|||+++=.. -.|..|..++.|++ +|.+|++|+.++
T Consensus 419 ~~g~mG~glpaAi----------Ga~la~----p~~~vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~ivV~NN~~yg~i~ 482 (572)
T PRK06456 419 GMGTMGFGLPAAM----------GAKLAR----PDKVVVDLDGDGSFLMTG--TNLATAVDEHIPVISVIFDNRTLGLVR 482 (572)
T ss_pred CcccccchhHHHH----------HHHHhC----CCCeEEEEEccchHhcch--HHHHHHHHhCCCeEEEEEECCchHHHH
Confidence 4599999999999 999883 467899999999996553 45677888886665 567788888765
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
..+ +. ..++..... ++. -..++....++||.+.. +| ++.++|.++|+++.+. ++|++||+.+.+.
T Consensus 483 ~~q---~~---~~~~~~~~~-~~~---~~~d~~~~A~a~G~~~~-~v--~~~~eL~~al~~a~~~--~~p~lIev~v~~~ 547 (572)
T PRK06456 483 QVQ---DL---FFGKRIVGV-DYG---PSPDFVKLAEAFGALGF-NV--TTYEDIEKSLKSAIKE--DIPAVIRVPVDKE 547 (572)
T ss_pred HHH---HH---hhCCCcccc-cCC---CCCCHHHHHHHCCCeeE-Ee--CCHHHHHHHHHHHHhC--CCCEEEEEEeCcc
Confidence 443 10 011110000 000 01345667899999988 55 6899999999999876 8899999999753
No 118
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=98.70 E-value=8.8e-08 Score=89.89 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=85.6
Q ss_pred CCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCcc-ccchHHHHHHHHhhccCcEE-EEEeCcchhhhhh
Q 041265 20 GHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGAT-IARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQ 97 (309)
Q Consensus 20 G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l-~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~ 97 (309)
|..|.+||+|+ |+++| ..+..|||+.|||++ +.| ...|-.|+.++.|++ +|.+|+.|+.++.
T Consensus 70 g~mG~alpaAi----------GaklA----~pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~g 133 (301)
T PRK05778 70 TLHGRAIAFAT----------GAKLA----NPDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKG 133 (301)
T ss_pred hhhccHHHHHH----------HHHHH----CCCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccC
Confidence 66789999999 99887 356789999999997 344 334667888886665 5678877876543
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
.. +. ....+.... ...+-......++..+.+++|..++.+..-.+.+++.++++++.+. ++|.+|++.+.
T Consensus 134 Q~-s~---t~~~g~~~~-~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~~--~GpalIeV~~~ 203 (301)
T PRK05778 134 QA-SP---TTPEGSKTK-TAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAISH--KGFAFIDVLSP 203 (301)
T ss_pred cc-cC---CcCCCcccc-cccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHhC--CCCEEEEEcCC
Confidence 21 00 000000000 0000000001345667899999986333457899999999999876 88999998875
No 119
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.70 E-value=9.8e-08 Score=97.16 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=90.5
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.|||+|+ |.++|. .+..|||++|||+++-. ...|..|..++.|++ +|.+|+.|+.++
T Consensus 419 ~~g~mG~glpaai----------Ga~la~----p~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~i~ 482 (572)
T PRK08979 419 GLGTMGFGLPAAM----------GVKFAM----PDETVVCVTGDGSIQMN--IQELSTALQYDIPVKIINLNNRFLGMVK 482 (572)
T ss_pred CcccccchhhHHH----------hhhhhC----CCCeEEEEEcchHhhcc--HHHHHHHHHcCCCeEEEEEeCCccHHHH
Confidence 3479999999999 999883 46789999999999655 355888888897665 567888888776
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
..+ +.. .++..... .+ . ..+++..+.++||.+.. +| .+.++|.++|+++.+.. ++|++|++.+.+.
T Consensus 483 ~~q---~~~---~~~~~~~~-~~-~--~~~d~~~~A~a~G~~~~-~v--~~~~eL~~al~~a~~~~-~~p~lIev~i~~~ 548 (572)
T PRK08979 483 QWQ---DMI---YQGRHSHS-YM-D--SVPDFAKIAEAYGHVGI-RI--SDPDELESGLEKALAMK-DRLVFVDINVDET 548 (572)
T ss_pred HHH---HHH---hCCccccc-CC-C--CCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhcC-CCcEEEEEEeCCc
Confidence 443 100 11110000 00 0 01345667899999987 55 68999999999987521 7799999999753
No 120
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=98.70 E-value=6.9e-08 Score=98.36 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=91.1
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~ 97 (309)
-|++|.|||.|+ |.+++. .+.+|+|++|||+++-.. -.|..|..++.|++ +|.+|++|+.++.
T Consensus 429 ~g~mG~~lpaai----------Ga~la~----p~~~Vv~i~GDG~f~m~~--~eL~Tavr~~lpvi~vV~NN~~yg~i~~ 492 (579)
T TIGR03457 429 FGNCGYAFPTII----------GAKIAA----PDRPVVAYAGDGAWGMSM--NEIMTAVRHDIPVTAVVFRNRQWGAEKK 492 (579)
T ss_pred cccccchHHHHH----------hhhhhC----CCCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEECcchHHHHH
Confidence 489999999999 999883 467899999999997653 55777888887665 5678888987654
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhc-CccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC-CCCCcEEEEEEeee
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEA-GSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI-PDPGAVLIHVITEK 175 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~-~~~~P~~I~~~T~k 175 (309)
.+ .. ..+...... ++ -. .++..+.++||.+.. +| ++.++|.++|+++.+. +.++|++|++.+.+
T Consensus 493 ~~---~~---~~~~~~~~~-~~----~~~~d~~~lA~a~G~~g~-~v--~~~~el~~al~~a~~~~~~~~p~lieV~v~~ 558 (579)
T TIGR03457 493 NQ---VD---FYNNRFVGT-EL----ESELSFAGIADAMGAKGV-VV--DKPEDVGPALKKAIAAQAEGKTTVIEIVCTR 558 (579)
T ss_pred HH---HH---hhCCcceec-cC----CCCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhhCCCCCcEEEEEEeCC
Confidence 33 10 011100000 00 01 245677899999988 55 6899999999988641 12789999999986
Q ss_pred ccC
Q 041265 176 EKA 178 (309)
Q Consensus 176 g~G 178 (309)
-.+
T Consensus 559 ~~~ 561 (579)
T TIGR03457 559 ELG 561 (579)
T ss_pred CcC
Confidence 654
No 121
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=98.69 E-value=9.5e-08 Score=89.13 Aligned_cols=134 Identities=10% Similarity=0.067 Sum_probs=86.9
Q ss_pred CCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCc-cccchHHHHHHHHhhccCcEE-EEEeCcchhhhhh
Q 041265 20 GHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGA-TIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQ 97 (309)
Q Consensus 20 G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~-l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~ 97 (309)
|.+|.++|+|+ |+++| ..+..|||++|||+ ++-|.. .|..|..++.|++ +|.+|+.|+.++.
T Consensus 69 g~mG~alpaAi----------GaklA----~Pd~~VV~i~GDG~~f~mg~~--eL~tA~r~nl~i~vIV~NN~~yGmt~~ 132 (286)
T PRK11867 69 TIHGRALAIAT----------GLKLA----NPDLTVIVVTGDGDALAIGGN--HFIHALRRNIDITYILFNNQIYGLTKG 132 (286)
T ss_pred hhhhcHHHHHH----------HHHHh----CCCCcEEEEeCccHHHhCCHH--HHHHHHHhCCCcEEEEEeCHHHhhhcC
Confidence 67899999999 98887 35778999999995 765543 3667788886665 5678888876542
Q ss_pred hhhcccchhhccCCcccchhhhHHhhh--cCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIE--AGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
.. .. ....+... ..... +.. ..+...+.+++|..++.+..-.+.+++.++|+++.+. ++|++|++.+.=
T Consensus 133 q~---s~-tt~~g~~~-~~~~~--g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~~--~Gp~lIev~~~C 203 (286)
T PRK11867 133 QY---SP-TSPVGFVT-KTTPY--GSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINH--KGFSFVEILQPC 203 (286)
T ss_pred cc---CC-CCCCCccc-ccccC--CCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHhC--CCCEEEEEeCCC
Confidence 21 00 00000000 00000 000 1233556788898877444456899999999999876 889999999864
Q ss_pred ccC
Q 041265 176 EKA 178 (309)
Q Consensus 176 g~G 178 (309)
-..
T Consensus 204 ~~~ 206 (286)
T PRK11867 204 PTF 206 (286)
T ss_pred CCC
Confidence 333
No 122
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=98.69 E-value=4.5e-08 Score=98.87 Aligned_cols=122 Identities=20% Similarity=0.150 Sum_probs=86.8
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.|||.|+ |.++|. .+.+|+|++|||+++- ....|..|..++.|++ +|.+|+.|+.++
T Consensus 402 ~~g~mG~glpaai----------Ga~la~----p~~~vv~i~GDG~f~m--~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~ 465 (539)
T TIGR03393 402 LWGSIGYTLPAAF----------GAQTAC----PNRRVILLIGDGSAQL--TIQELGSMLRDKQHPIILVLNNEGYTVER 465 (539)
T ss_pred hhhhhhhHHHHHH----------HHHhcC----CCCCeEEEEcCcHHHh--HHHHHHHHHHcCCCCEEEEEeCCceEEEE
Confidence 4589999999999 999873 5678999999999954 4467888888896655 567888886653
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCe----EEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEE
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLY----YIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVI 172 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~----~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~ 172 (309)
... .......++ -.+++....++||.+ +. +| .+.++|.++++++.+. ++|++|++.
T Consensus 466 ~~~--------~~~~~~~~~-------~~~df~~la~a~G~~~~~~~~-~v--~~~~el~~al~~a~~~--~~p~liev~ 525 (539)
T TIGR03393 466 AIH--------GAEQRYNDI-------ALWNWTHLPQALSLDPQSECW-RV--SEAEQLADVLEKVAAH--ERLSLIEVV 525 (539)
T ss_pred eec--------CCCCCcCcC-------CCCCHHHHHHHcCCCCccceE-Ee--ccHHHHHHHHHHHhcc--CCeEEEEEE
Confidence 211 000000000 013445667888874 55 44 6899999999999876 889999999
Q ss_pred eee
Q 041265 173 TEK 175 (309)
Q Consensus 173 T~k 175 (309)
+.+
T Consensus 526 i~~ 528 (539)
T TIGR03393 526 LPK 528 (539)
T ss_pred cCc
Confidence 854
No 123
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=98.68 E-value=8.1e-08 Score=98.04 Aligned_cols=126 Identities=15% Similarity=0.235 Sum_probs=87.8
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~ 97 (309)
-|++|.|+|.|+ |+++|. .+.+|+|++|||+++-. .=.|..|..++.|++ +|.+|++|+.+..
T Consensus 418 ~gsmG~~lpaai----------Ga~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~ 481 (586)
T PRK06276 418 LGTMGFGFPAAI----------GAKVAK----PDANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNRTLGMVYQ 481 (586)
T ss_pred ccccccchhHHH----------hhhhhc----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHH
Confidence 379999999999 999883 45679999999999754 334777778887765 5677778876543
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
.. +. ..+...... ++. -..++....+++|.+.. .| ++.++|.++++++.+. ++|++|++.+.+
T Consensus 482 ~~---~~---~~~~~~~~~-~~~---~~~d~~~la~a~G~~~~-~v--~~~~el~~al~~a~~~--~~p~lIeV~i~~ 544 (586)
T PRK06276 482 WQ---NL---YYGKRQSEV-HLG---ETPDFVKLAESYGVKAD-RV--EKPDEIKEALKEAIKS--GEPYLLDIIIDP 544 (586)
T ss_pred HH---HH---HhCCCcccc-cCC---CCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhC--CCCEEEEEEecc
Confidence 32 00 011110000 000 01244667899999988 55 6899999999999875 889999999964
No 124
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.67 E-value=9.7e-08 Score=97.21 Aligned_cols=130 Identities=17% Similarity=0.211 Sum_probs=90.6
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.|||+|+ |.++|. .+.+|||++|||+++-. .-.|..|..++.|++ +|.+|+.|+.++
T Consensus 421 ~~gsmG~glpaAi----------Ga~la~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpv~ivV~NN~~y~~i~ 484 (574)
T PRK06466 421 GLGTMGFGLPAAM----------GVKLAF----PDQDVACVTGEGSIQMN--IQELSTCLQYGLPVKIINLNNGALGMVR 484 (574)
T ss_pred CcchhhchHHHHH----------HHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHH
Confidence 3378999999999 999884 46789999999999655 355777888887765 567888888776
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
... +. ..++..... .. . ..+++..+.++||.+.. +| .+.+++.++|+++.+.+ ++|++|++++.+.
T Consensus 485 ~~q---~~---~~~~~~~~~-~~-~--~~~d~~~lA~a~G~~~~-~v--~~~~el~~al~~a~~~~-~~p~lIev~i~~~ 550 (574)
T PRK06466 485 QWQ---DM---QYEGRHSHS-YM-E--SLPDFVKLAEAYGHVGI-RI--TDLKDLKPKLEEAFAMK-DRLVFIDIYVDRS 550 (574)
T ss_pred HHH---HH---hcCCceeec-CC-C--CCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhcC-CCcEEEEEEeCCc
Confidence 543 10 011110000 00 0 01345667899999988 55 68999999999887532 7799999999753
Q ss_pred c
Q 041265 177 K 177 (309)
Q Consensus 177 ~ 177 (309)
.
T Consensus 551 ~ 551 (574)
T PRK06466 551 E 551 (574)
T ss_pred c
Confidence 3
No 125
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.67 E-value=1.3e-07 Score=87.88 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=89.0
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCC-ccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEG-ATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG-~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
-|.+|.++|+|+ |+++| ..+..||+++||| ++.-|.- .|..|..++.+++ +|.||+.|+.+.
T Consensus 58 ~~~~G~alp~A~----------GaklA----~Pd~~VV~i~GDG~~f~ig~~--eL~tA~rrn~~i~vIV~nN~~ygmtg 121 (279)
T PRK11866 58 HGIHGRVLPIAT----------GVKWA----NPKLTVIGYGGDGDGYGIGLG--HLPHAARRNVDITYIVSNNQVYGLTT 121 (279)
T ss_pred ccccccHHHHHH----------HHHHH----CCCCcEEEEECChHHHHccHH--HHHHHHHHCcCcEEEEEEChhhhhhc
Confidence 567799999999 99988 3567899999999 6777744 3778888886665 567777776654
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
... +. ....+..... ...-.-.-..++....+++|..++.+.+..|.+++.++++++.+. ++|.+|++...
T Consensus 122 gQ~-s~---~t~~g~~t~~-t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~~--~Gps~I~v~~p 192 (279)
T PRK11866 122 GQA-SP---TTPRGVKTKT-TPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIKH--KGFSFIDVLSP 192 (279)
T ss_pred ccc-cC---CCCCCceeec-cCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHhC--CCCEEEEEeCC
Confidence 221 00 0000000000 000000000144567899999987566668999999999999986 89999999875
No 126
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.67 E-value=1.2e-07 Score=88.05 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=87.2
Q ss_pred CCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhhh
Q 041265 20 GHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQE 98 (309)
Q Consensus 20 G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~~ 98 (309)
|.+|.+||+|+ |+++| ..+..|||++|||++. ..-...|..|+.++.|++ +|.+|+.|+.+...
T Consensus 60 ~~mG~alp~Ai----------GaklA----~pd~~VVai~GDG~~~-~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q 124 (280)
T PRK11869 60 TLHGRAIPAAT----------AVKAT----NPELTVIAEGGDGDMY-AEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQ 124 (280)
T ss_pred cccccHHHHHH----------HHHHH----CCCCcEEEEECchHHh-hCcHHHHHHHHHhCcCcEEEEEECHHHhhhcce
Confidence 44788899998 88777 4567899999999964 222445778888887765 56777778664422
Q ss_pred hhcccchhhccC-CcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 99 AFSSKDKKQKFG-GQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 99 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
. +. ..+ +........-......++..+.+++|..++.+.+-.+.+++.++++++.+. ++|.+|++.+.
T Consensus 125 ~-s~-----~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~~--~Gp~lIeV~~p 193 (280)
T PRK11869 125 A-SP-----TTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIKH--KGLAIVDIFQP 193 (280)
T ss_pred e-cC-----CCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEEECC
Confidence 1 00 000 000000000000001355678899999998555557999999999999987 88999999986
No 127
>PRK11269 glyoxylate carboligase; Provisional
Probab=98.66 E-value=1.1e-07 Score=97.18 Aligned_cols=137 Identities=20% Similarity=0.176 Sum_probs=88.9
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.|||.|+ |.++|. .+..|||++|||+++-.. -.|..|..++.|++ +|.+|+.|+.++
T Consensus 417 ~~G~mG~glpaAi----------Ga~la~----p~r~Vv~i~GDG~f~m~~--~eL~Ta~~~~lpv~~vV~NN~~~g~i~ 480 (591)
T PRK11269 417 QAGPLGWTIPAAL----------GVRAAD----PDRNVVALSGDYDFQFLI--EELAVGAQFNLPYIHVLVNNAYLGLIR 480 (591)
T ss_pred ccccccchhhhHH----------hhhhhC----CCCcEEEEEccchhhcCH--HHHHHHHHhCCCeEEEEEeCCchhHHH
Confidence 3488999999999 999883 467899999999996543 34667888887765 456676788765
Q ss_pred hhhhcccchhhcc--CCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC--CCCCcEEEEEE
Q 041265 97 QEAFSSKDKKQKF--GGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI--PDPGAVLIHVI 172 (309)
Q Consensus 97 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~--~~~~P~~I~~~ 172 (309)
... ....... ......+..-....-..++..+.++||.++. +| ++.++|.++++++.+. +.++|++||++
T Consensus 481 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~-~v--~~~~eL~~al~~a~~~~~~~~gp~lieV~ 554 (591)
T PRK11269 481 QAQ---RAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAI-RV--FKPEDIAPALEQAKALMAEFRVPVVVEVI 554 (591)
T ss_pred HHH---HHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhhcccCCCcEEEEEE
Confidence 443 1000000 0000000000000001345677899999988 55 7999999999998640 12789999999
Q ss_pred eeec
Q 041265 173 TEKE 176 (309)
Q Consensus 173 T~kg 176 (309)
+.+.
T Consensus 555 v~~~ 558 (591)
T PRK11269 555 LERV 558 (591)
T ss_pred eccc
Confidence 9653
No 128
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.65 E-value=2.2e-07 Score=86.87 Aligned_cols=149 Identities=16% Similarity=0.217 Sum_probs=98.2
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEE-EEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKR-LHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~-i~~nn~~~~~ 95 (309)
+..+..|.+.++|. |++.|.+..+++..|||+.|||.+-.-- .++|..|...+.|+++ +.||.-|...
T Consensus 66 ~~~~~fg~~~a~a~----------Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG-~~~L~~a~~r~~ni~~ivlDNe~Y~nT 134 (299)
T PRK11865 66 WIHVAFENAAAVAS----------GIERAVKALGKKVNVVAIGGDGGTADIG-FQSLSGAMERGHNILYLMYDNEAYMNT 134 (299)
T ss_pred cchhhhcchHHHHH----------HHHHHHHHhcCCCeEEEEeCCchHhhcc-HHHHHHHHHcCCCeEEEEECCccccCC
Confidence 67777889999999 9999988877777899999999874332 3889999998877765 4666655421
Q ss_pred hhhhhcccchhhccCCcccchhh---hHH--hhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEE
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDA---FSR--EIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIH 170 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~ 170 (309)
. .+ .+..-..+ ....... ... ..-..+....+.+.|..|+-.++-.|+.++.++++++.+. +||.+||
T Consensus 135 G-gQ---~S~~Tp~G-a~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~--~Gps~I~ 207 (299)
T PRK11865 135 G-IQ---RSGSTPFG-ASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKEV--EGPAYIQ 207 (299)
T ss_pred C-CC---CCCCCCCC-cccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC--CCCEEEE
Confidence 1 11 00000000 0000000 000 0001123456788999998777778999999999999986 8999999
Q ss_pred EEee--eccCCchhh
Q 041265 171 VITE--KEKAMLPLK 183 (309)
Q Consensus 171 ~~T~--kg~G~~~~e 183 (309)
+.+. .++++.+.+
T Consensus 208 v~sPC~~~~~~~~~~ 222 (299)
T PRK11865 208 VLQPCPTGWGFPPEK 222 (299)
T ss_pred EECCCCCCCCCCHHH
Confidence 9985 466655543
No 129
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=98.65 E-value=8.5e-08 Score=87.16 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=82.3
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhH-hcCCCCeEEEEEeCCccc-cchHHHHHHHHhhccCcEE-EEEeCcchhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRD-LLGKNNHVISVIVEGATI-ARMSYEAINNAGVLNKALK-RLHSNPQFRQ 94 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k-~~~~~~~v~~~~GDG~l~-eG~~~EAln~A~~~~~~Li-~i~~nn~~~~ 94 (309)
+.|.+|.|||.|+ |.+++.. ....+.+|+|++|||++. -| +.|-++ +..++.|++ +|.+|+.|+.
T Consensus 62 ~~g~mG~GlpaAi----------GA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~l~t-a~~~~l~i~ivVlNN~~yg~ 129 (237)
T cd02018 62 DANAVASGLKRGL----------KARFPKDRELDKKKDVVVIGGDGATYDIG-FGALSH-SLFRGEDITVIVLDNEVYSN 129 (237)
T ss_pred CHHHHHHHHHHHH----------HhhcccccccCCCCcEEEEeCchHHHhcc-HHHHHH-HHHcCCCeEEEEECCccccC
Confidence 4599999999999 9887621 112467899999999863 22 223333 344676665 5567776763
Q ss_pred hhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhc-CCCCCcEEEEEEe
Q 041265 95 LCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKA-IPDPGAVLIHVIT 173 (309)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~-~~~~~P~~I~~~T 173 (309)
.. .. +... ...+............-.+++....+++|..++.++.=.+.+++.++|+++.+ . ++|++|++.+
T Consensus 130 ~~-~q---~~~~-~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~--~GP~lI~v~i 202 (237)
T cd02018 130 TG-GQ---RSGA-TPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRT--DGPTFIHAYT 202 (237)
T ss_pred CC-CC---CCCC-CcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcC--CCCEEEEEeC
Confidence 32 11 0000 00000000000000001235567889999999842222569999999999986 6 8899999996
Q ss_pred e
Q 041265 174 E 174 (309)
Q Consensus 174 ~ 174 (309)
.
T Consensus 203 ~ 203 (237)
T cd02018 203 P 203 (237)
T ss_pred C
Confidence 4
No 130
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.64 E-value=1.6e-07 Score=95.69 Aligned_cols=129 Identities=14% Similarity=0.151 Sum_probs=89.9
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~ 97 (309)
-|++|.|||+|+ |.++|. .+..|||++|||+++-. .-.|..|..++.|++ +|.+|+.|+.++.
T Consensus 420 ~g~mG~glpaai----------Ga~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~ 483 (574)
T PRK07979 420 LGTMGFGLPAAL----------GVKMAL----PEETVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNRYLGMVKQ 483 (574)
T ss_pred ccchhhHHHHHH----------HHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCchhhHHHH
Confidence 388999999999 999883 46689999999999544 466778888997765 5677778887765
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC-CCCCcEEEEEEeeec
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI-PDPGAVLIHVITEKE 176 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~-~~~~P~~I~~~T~kg 176 (309)
.+ +. ..++..... .+. ..+++....++||.... +| .+.++|.++++++.+. +.++|.+|++.+.+-
T Consensus 484 ~q---~~---~~~~~~~~~-~~~---~~~d~~~iA~a~G~~g~-~v--~~~~eL~~al~~a~~~~~~~~p~lIeV~i~~~ 550 (574)
T PRK07979 484 WQ---DM---IYSGRHSQS-YMQ---SLPDFVRLAEAYGHVGI-QI--SHPDELESKLSEALEQVRNNRLVFVDVTVDGS 550 (574)
T ss_pred HH---HH---hcCCccccc-cCC---CCCCHHHHHHHCCCEEE-EE--CCHHHHHHHHHHHHhccCCCCcEEEEEEECCc
Confidence 43 10 011110000 000 01355677899999987 55 6899999999988652 127799999999753
No 131
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=98.63 E-value=1.8e-07 Score=96.05 Aligned_cols=132 Identities=17% Similarity=0.242 Sum_probs=90.3
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.|+|.|+ |.+++. .+..|+|++|||++.-. .-.|-.|..++.|++ +|.+|+.|+.++
T Consensus 445 ~~G~mG~glpaai----------Ga~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~ 508 (612)
T PRK07789 445 GLGTMGYAVPAAM----------GAKVGR----PDKEVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNGNLGMVR 508 (612)
T ss_pred CcccccchhhhHH----------hhhccC----CCCcEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHHH
Confidence 4478999999999 999883 46789999999999543 456777888886665 567888898765
Q ss_pred hhhhcccchhhccCCcccchhhhHHh-hhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSRE-IEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
... .. ..+..... ..+... .-.+++..+.+++|..+. +| ++.++|.++|+++.+.. ++|++|++.+.+
T Consensus 509 ~~q---~~---~~~~~~~~-~~~~~~~~~~~d~~~lA~a~G~~~~-~V--~~~~eL~~al~~a~~~~-~~p~lIev~i~~ 577 (612)
T PRK07789 509 QWQ---TL---FYEERYSN-TDLHTHSHRIPDFVKLAEAYGCVGL-RC--EREEDVDAVIEKARAIN-DRPVVIDFVVGK 577 (612)
T ss_pred HHH---HH---hhCCCcce-eecCcCCCCCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhcC-CCcEEEEEEECC
Confidence 443 10 00100000 000000 001345678899999998 55 68999999999987631 689999999975
Q ss_pred c
Q 041265 176 E 176 (309)
Q Consensus 176 g 176 (309)
.
T Consensus 578 ~ 578 (612)
T PRK07789 578 D 578 (612)
T ss_pred c
Confidence 3
No 132
>PLN02573 pyruvate decarboxylase
Probab=98.62 E-value=9.8e-08 Score=97.31 Aligned_cols=123 Identities=17% Similarity=0.175 Sum_probs=84.9
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~ 95 (309)
.+-|++|.|||.|+ |.++|. .+.+|||++|||+++ +..-.|..|..++.|++ +|.+|+.|+.+
T Consensus 425 ~~~gsmG~glpaai----------Ga~lA~----p~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~ 488 (578)
T PLN02573 425 MQYGSIGWSVGATL----------GYAQAA----PDKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGYTIE 488 (578)
T ss_pred cchhhhhhhhhHHH----------HHHHhC----CCCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCceeEE
Confidence 34689999999999 999884 467899999999995 44466778888886655 56777778654
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcC-----CeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEE
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLG-----LYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIH 170 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G-----~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~ 170 (309)
+... ....... -..++..+.++|| .... +| .+.++|.++++++.+...++|++|+
T Consensus 489 ~~~~----------~~~~~~~-------~~~d~~~lA~a~G~~~g~~~~~-~V--~~~~eL~~al~~a~~~~~~~p~lie 548 (578)
T PLN02573 489 VEIH----------DGPYNVI-------KNWNYTGLVDAIHNGEGKCWTA-KV--RTEEELIEAIATATGEKKDCLCFIE 548 (578)
T ss_pred Eeec----------ccCcccc-------CCCCHHHHHHHhcCcCCceeEE-Ee--cCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 3211 0000000 0123455678875 6776 55 4799999999998741127899999
Q ss_pred EEeee
Q 041265 171 VITEK 175 (309)
Q Consensus 171 ~~T~k 175 (309)
+++.+
T Consensus 549 V~v~~ 553 (578)
T PLN02573 549 VIVHK 553 (578)
T ss_pred EEcCc
Confidence 99963
No 133
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=98.62 E-value=2e-07 Score=95.21 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=91.1
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.|||.|+ |.+++. .+.+||+++|||+++-. ..| |..|..++.|++ +|.+|+.|+.++
T Consensus 433 ~~g~mG~glp~ai----------Ga~la~----p~r~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~y~~~~ 496 (588)
T PRK07525 433 SFGNCGYAFPAII----------GAKIAC----PDRPVVGFAGDGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQWGAEK 496 (588)
T ss_pred cccccccHHHHHH----------HHHHhC----CCCcEEEEEcCchHhcc-HHH-HHHHHHhCCCeEEEEEeCchhHHHH
Confidence 4588999999999 999883 46789999999999887 455 557888886665 567888898765
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC-CCCCcEEEEEEeee
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI-PDPGAVLIHVITEK 175 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~-~~~~P~~I~~~T~k 175 (309)
... .. ..+...... ++- -..++..+.++||.+.. .| .+.+++.++++++.+. +.++|++|++.|.+
T Consensus 497 ~~~---~~---~~~~~~~~~-~~~---~~~d~~~lA~a~G~~~~-~v--~~~~el~~al~~a~~~~~~~~p~lIev~~~~ 563 (588)
T PRK07525 497 KNQ---VD---FYNNRFVGT-ELD---NNVSYAGIAEAMGAEGV-VV--DTQEELGPALKRAIDAQNEGKTTVIEIMCNQ 563 (588)
T ss_pred HHH---HH---HhCCCcccc-cCC---CCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhcCCCCCcEEEEEEecc
Confidence 443 10 011000000 000 01244667899999998 66 5899999999987653 11579999999986
Q ss_pred ccC
Q 041265 176 EKA 178 (309)
Q Consensus 176 g~G 178 (309)
..|
T Consensus 564 ~~~ 566 (588)
T PRK07525 564 ELG 566 (588)
T ss_pred ccC
Confidence 554
No 134
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=98.61 E-value=1.4e-07 Score=95.97 Aligned_cols=127 Identities=18% Similarity=0.245 Sum_probs=88.1
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+-|++|.|+|.|+ |.++|. .+..|||++|||+++-- .-.|..|..++.|++ +|.+|++|+.++
T Consensus 416 ~~g~mG~glpaai----------Ga~lA~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~ 479 (566)
T PRK07282 416 GLGTMGFGIPAAI----------GAKIAN----PDKEVILFVGDGGFQMT--NQELAILNIYKVPIKVVMLNNHSLGMVR 479 (566)
T ss_pred ccccccchhhHhh----------eeheec----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCCchHHH
Confidence 3489999999999 999883 46779999999999654 355778888886654 668888898776
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
..+ .. ..++.... ..+. -.+++..+.++||.+.. +| .+.+++.++++.+ +. ++|++|++.+.+.
T Consensus 480 ~~q---~~---~~~~~~~~-~~~~---~~~d~~~lA~a~G~~~~-~v--~~~~el~~al~~~-~~--~~p~lIeV~v~~~ 543 (566)
T PRK07282 480 QWQ---ES---FYEGRTSE-SVFD---TLPDFQLMAQAYGIKHY-KF--DNPETLAQDLEVI-TE--DVPMLIEVDISRK 543 (566)
T ss_pred HHH---HH---HhCCCccc-ccCC---CCCCHHHHHHHCCCEEE-EE--CCHHHHHHHHHHh-cC--CCCEEEEEEeCCc
Confidence 543 10 01110000 0000 01345667899999988 55 5789999999754 33 7899999999753
No 135
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=98.59 E-value=2.3e-07 Score=86.10 Aligned_cols=136 Identities=13% Similarity=0.093 Sum_probs=82.9
Q ss_pred CCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhhh
Q 041265 20 GHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQE 98 (309)
Q Consensus 20 G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~~ 98 (309)
+.+|.+||+|+ |+++|. .+..|||++|||++.- +.--.+-.|+.++.|++ +|.+|+.|+.+...
T Consensus 68 ~~~G~alPaAi----------GaklA~----Pdr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q 132 (277)
T PRK09628 68 TTHGRAVAYAT----------GIKLAN----PDKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGLTNSQ 132 (277)
T ss_pred eccccHHHHHH----------HHHHHC----CCCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhcceec
Confidence 46788899988 888873 5778999999999742 11222334777787765 55777777654311
Q ss_pred hhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeecc
Q 041265 99 AFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEK 177 (309)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~ 177 (309)
. ... ...+...............++....+++|+.++-...=.+.+++.++++++.+. ++|++|++.+.--.
T Consensus 133 ~----~~~-t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~~--~Gp~lIeV~~~c~~ 204 (277)
T PRK09628 133 T----SPT-TPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKGFSH--KGFSFFDVFSNCHI 204 (277)
T ss_pred c----cCC-CCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHhC--CCCEEEEEcCCCCC
Confidence 1 000 000000000000000001234667899999974111225899999999999876 88999999997543
No 136
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=98.58 E-value=1.6e-07 Score=95.48 Aligned_cols=127 Identities=13% Similarity=0.056 Sum_probs=86.0
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCc-chhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNP-QFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn-~~~~~~ 96 (309)
+-|++|.|||.|+ |.++|. +..|||++|||+++--. ..|..|..++.|+++|+-|| +|-...
T Consensus 422 ~~gsmG~glpaai----------Ga~la~-----~~~vv~i~GDG~f~m~~--~EL~Ta~r~~lpi~~vV~NN~~~~~~~ 484 (569)
T PRK09259 422 TWGVMGIGMGYAI----------AAAVET-----GKPVVAIEGDSAFGFSG--MEVETICRYNLPVTVVIFNNGGIYRGD 484 (569)
T ss_pred CCccccccHHHHH----------HHHhcC-----CCcEEEEecCccccccH--HHHHHHHHcCCCEEEEEEeChhHHHHH
Confidence 3489999999999 999872 66799999999996553 44778888898877654444 331111
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
... ...+...... .+. -.+++..+.++||+.+. +| .+.+++.++++++.+. ++|++|++.+.+.
T Consensus 485 ~~~-------~~~~~~~~~~-~~~---~~~d~~~lA~a~G~~~~-~v--~~~~el~~al~~a~~~--~~p~lIev~id~~ 548 (569)
T PRK09259 485 DVN-------LSGAGDPSPT-VLV---HHARYDKMMEAFGGVGY-NV--TTPDELRHALTEAIAS--GKPTLINVVIDPA 548 (569)
T ss_pred HHH-------hhcCCCcccc-ccC---CCCCHHHHHHHCCCeEE-EE--CCHHHHHHHHHHHHhC--CCCEEEEEEECCC
Confidence 000 0000000000 000 02345667899999988 66 6899999999999876 8899999999764
Q ss_pred c
Q 041265 177 K 177 (309)
Q Consensus 177 ~ 177 (309)
.
T Consensus 549 ~ 549 (569)
T PRK09259 549 A 549 (569)
T ss_pred C
Confidence 4
No 137
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=98.56 E-value=3.6e-07 Score=85.15 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=79.4
Q ss_pred chhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhhhhh
Q 041265 22 SSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQEAF 100 (309)
Q Consensus 22 ~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~~~~ 100 (309)
+|.+||+|+ |+++| ..+..|||++|||++ -++....|..|+.++.|++ +|.+|+.|+.++...
T Consensus 55 mG~alPaAi----------GaklA----~Pd~~VVai~GDG~f-~~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~- 118 (287)
T TIGR02177 55 HGRALPVAT----------GIKLA----NPHLKVIVVGGDGDL-YGIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQA- 118 (287)
T ss_pred cccHHHHHH----------HHHHH----CCCCcEEEEeCchHH-HhccHHHHHHHHHhCcCeEEEEEECHHHHhhhccc-
Confidence 488999998 88887 457789999999996 2333445778888887765 567888887655222
Q ss_pred cccchhhccCCcccchhhh--HHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 101 SSKDKKQKFGGQMHEIDAF--SREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
.. ....+... ..... ...-+.+....+.+++|+... ..-.+.+++.++++++.+. ++|++|++.+.
T Consensus 119 --sp-~t~~G~~~-~~~~~g~~~~~~np~~~a~A~g~g~va~--~~~~~~~eL~~ai~~Al~~--~GpslIeV~~p 186 (287)
T TIGR02177 119 --SP-TLLKGVKT-KSLPYPNIQDPVNPLLLAIALGYTFVAR--GFSGDVAHLKEIIKEAINH--KGYALVDILQP 186 (287)
T ss_pred --cc-CccCCcce-eecccCccCCCCCHHHHHHhCCCCeEEE--EecCCHHHHHHHHHHHHhC--CCCEEEEEeCC
Confidence 00 00000000 00000 000001112234455665544 2237999999999999876 88999999875
No 138
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=98.53 E-value=5.1e-07 Score=91.53 Aligned_cols=124 Identities=12% Similarity=0.067 Sum_probs=84.6
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEE-EeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRL-HSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i-~~nn~~~~~~~ 97 (309)
-|++|.|||.|+ |.++|. +.+||+++|||+++-.. ..|-.|..++.|+++| .+|++|.....
T Consensus 416 ~gsmG~~lpaai----------Gaala~-----~~~vv~i~GDGsf~m~~--~EL~Ta~r~~l~v~~vV~NN~~~~~~~~ 478 (554)
T TIGR03254 416 WGVMGIGMGYAI----------AAAVET-----GKPVVALEGDSAFGFSG--MEVETICRYNLPVCVVIFNNGGIYRGDD 478 (554)
T ss_pred CCcCCchHHHHH----------HHHhcC-----CCcEEEEEcCchhcccH--HHHHHHHHcCCCEEEEEEeChhhhhhhh
Confidence 489999999999 999972 57799999999997653 3477888889777655 55555511100
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
.. ..+...... ++. -..++..+.++||.+.. +| .+.+++.++++++.+. ++|++|++.+.+.
T Consensus 479 ~~--------~~~~~~~~~-~~~---~~~df~~la~a~G~~~~-~v--~~~~el~~al~~a~~~--~~p~lIev~id~~ 540 (554)
T TIGR03254 479 VN--------VVGADPAPT-VLV---HGARYDKMMKAFGGVGY-NV--TTPDELKAALNEALAS--GKPTLINAVIDPS 540 (554)
T ss_pred hh--------hcCCCCCcc-ccC---CCCCHHHHHHHCCCeEE-Ee--CCHHHHHHHHHHHHhC--CCCEEEEEEECCC
Confidence 00 000000000 000 01345667899999988 55 6899999999998765 8899999999754
No 139
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=98.53 E-value=3.8e-07 Score=92.18 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=85.7
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
.-|++|.|||.++ |.++|. +.++++++|||+++ +..-.|..|..++.|++ +|.+|+.|+.++
T Consensus 401 ~~g~mG~glpaai----------Ga~lA~-----~~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~ 463 (535)
T TIGR03394 401 YYAGMGFGVPAGI----------GAQCTS-----GKRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLR 463 (535)
T ss_pred ccchhhhHHHHHH----------HHHhCC-----CCCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCccceee
Confidence 3489999999999 999983 35678899999995 44456778888886655 667777887654
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
..+ + .. ... ++ -..++..+.++||.+.. +| .+.++|.++++++.+.+ ++|++|++.+.+.
T Consensus 464 ~~~---~-----~~-~~~---~~----~~~d~~~lA~a~G~~~~-~v--~~~~eL~~al~~a~~~~-~~p~lIev~i~~~ 523 (535)
T TIGR03394 464 VFQ---P-----ES-AFN---DL----DDWRFADMAAGMGGDGV-RV--RTRAELAAALDKAFATR-GRFQLIEAMLPRG 523 (535)
T ss_pred hhc---c-----CC-Ccc---cC----CCCCHHHHHHHcCCCce-Ee--CCHHHHHHHHHHHHhcC-CCeEEEEEECCcc
Confidence 332 0 00 000 00 01344667899999987 55 58999999999887541 5589999999643
No 140
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.36 E-value=1.6e-06 Score=88.69 Aligned_cols=128 Identities=15% Similarity=0.138 Sum_probs=85.7
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+.|.+|.++|.|+ |.++| ..+.+||+++|||++.-... ..|..|..++.|++ +|.+|+.|+.+.
T Consensus 401 ~~~~mG~~~~~Ai----------Ga~~a----~p~~~Vv~i~GDG~f~~~g~-~eL~tav~~~~~i~~vVlnN~~~g~~~ 465 (595)
T TIGR03336 401 TTLCMGASIGVAS----------GLSKA----GEKQRIVAFIGDSTFFHTGI-PGLINAVYNKANITVVILDNRITAMTG 465 (595)
T ss_pred eeeccCchHHHHh----------hhhhc----CCCCCEEEEeccchhhhcCH-HHHHHHHHcCCCeEEEEEcCcceeccC
Confidence 3588999999999 99887 34678999999999973212 23555777786765 557777776543
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVIT 173 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T 173 (309)
... ..+....... ...-..++....+++|+++....+-.|++++.++++++.+. ++|++|+++.
T Consensus 466 ~q~--------~~~~~~~~~~---~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~--~gp~li~v~~ 529 (595)
T TIGR03336 466 HQP--------NPGTGVTGMG---EATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAA--EGVSVIIAKQ 529 (595)
T ss_pred CCC--------CCCCCCCCCC---CcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHhc--CCCEEEEEcc
Confidence 211 0000000000 00001244667899999998556667899999999999876 8899999865
No 141
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.29 E-value=2.6e-06 Score=80.66 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=71.2
Q ss_pred CCCCCCCCC------CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccC
Q 041265 8 CGLENVHDA------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNK 81 (309)
Q Consensus 8 ~g~e~~~d~------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~ 81 (309)
||+.||-.+ ---|-+|.+|+.|. |+++ ++.+-.++|++||||..+|-.--+-. +..+-+
T Consensus 122 gGipSH~~p~tPGsIhEGGELGYaLshA~----------GA~~----DnPdliv~~vvGDGEaETGplA~sWh-~~kfln 186 (379)
T PF09364_consen 122 GGIPSHVSPETPGSIHEGGELGYALSHAF----------GAVF----DNPDLIVACVVGDGEAETGPLAASWH-SNKFLN 186 (379)
T ss_dssp TSB-SSS-TTSTT-S---SSTS-HHHHHH----------HHHT----T-TT-EEEEEEETTGGGSHHHHHHGG-GGGSS-
T ss_pred CCCccccCcCCCCccCcCcchhhHHHHHh----------hccc----CCCCeEEEEEecCCcccCCccccccc-ccceeC
Confidence 677555433 55788999999999 8886 46777899999999999986322221 111112
Q ss_pred c-----EE-EEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHH
Q 041265 82 A-----LK-RLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVL 155 (309)
Q Consensus 82 ~-----Li-~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al 155 (309)
| ++ ++.-| +|.+..++. +.+++. ++ ..+.|+.+||+.+ .|||.|.+++...+
T Consensus 187 P~~dGaVLPILhLN-G~KI~~pTi------l~r~~~-----~e---------L~~lf~G~Gy~p~-~Veg~dp~~~h~~m 244 (379)
T PF09364_consen 187 PATDGAVLPILHLN-GYKISNPTI------LARMSD-----EE---------LEALFRGYGYEPI-FVEGDDPADMHQAM 244 (379)
T ss_dssp TTTS-EEEEEEEE--SBSSSSB-H------HHHS-H-----HH---------HHHHHHHTTEEEE-EEE---HHHHHHHH
T ss_pred cccCceeeceEEec-CccccCCeE------eeecCH-----HH---------HHHHHHhCCCeEE-EEecCCHHHHHHHH
Confidence 2 33 45555 575443332 111110 11 2567999999998 99999977765432
Q ss_pred ----H-----------HhhcC-CCCCc--EEEEEEeeeccCCch
Q 041265 156 ----K-----------QVKAI-PDPGA--VLIHVITEKEKAMLP 181 (309)
Q Consensus 156 ----~-----------~a~~~-~~~~P--~~I~~~T~kg~G~~~ 181 (309)
. .+|+. ...+| -+|+++|.||.+.+.
T Consensus 245 a~ald~a~~~I~~iq~~Ar~~~~~~~prwPmivlRtPKGWtgP~ 288 (379)
T PF09364_consen 245 AAALDWALEEIRAIQKAARSGNPAYRPRWPMIVLRTPKGWTGPK 288 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--SS----EEEEEEE--TTTTS-S
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCcEEEEECCcccCCcc
Confidence 1 22322 11233 367799999998664
No 142
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.21 E-value=5e-06 Score=93.90 Aligned_cols=129 Identities=15% Similarity=0.125 Sum_probs=86.2
Q ss_pred CcCCchh--hHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhc--cCcEEE-EEeCcch
Q 041265 18 GVGHSST--SISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVL--NKALKR-LHSNPQF 92 (309)
Q Consensus 18 ~~G~~g~--gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~--~~~Li~-i~~nn~~ 92 (309)
+-|.+|- +||.|+ |.+++. +.+|+|++|||++. +....|..|..+ +.|+++ |.+|++|
T Consensus 757 ~~G~mG~~G~lpaAI----------Gaala~-----~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gg 819 (1655)
T PLN02980 757 NRGASGIDGLLSTAI----------GFAVGC-----NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGG 819 (1655)
T ss_pred cCCccchhhhHHHHH----------HHhhcC-----CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCc
Confidence 3488998 599999 999873 66899999999994 455667777774 667754 5666666
Q ss_pred hhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEE
Q 041265 93 RQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVI 172 (309)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~ 172 (309)
++.+.... ++. .+. .. .+.+.......++....++||+++. +| .+.+++.++++++.+. ++|++||+.
T Consensus 820 gi~~~l~~-~~~--~~~--~~--~~~~~~~~~~~df~~lA~a~G~~~~-rV--~~~~eL~~aL~~a~~~--~~p~lIEV~ 887 (1655)
T PLN02980 820 AIFSLLPI-AKR--TEP--RV--LNQYFYTSHDISIENLCLAHGVRHL-HV--GTKSELEDALFTSQVE--QMDCVVEVE 887 (1655)
T ss_pred HhhhcCcc-CCC--Ccc--hh--HHHHhcCCCCCCHHHHHHHcCCcee-ec--CCHHHHHHHHHHhhcc--CCCEEEEEe
Confidence 54432100 000 000 00 0010000012455778899999999 66 5899999999988875 889999999
Q ss_pred eee
Q 041265 173 TEK 175 (309)
Q Consensus 173 T~k 175 (309)
|.+
T Consensus 888 t~~ 890 (1655)
T PLN02980 888 SSI 890 (1655)
T ss_pred cCh
Confidence 985
No 143
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=97.90 E-value=4.3e-05 Score=75.38 Aligned_cols=125 Identities=19% Similarity=0.114 Sum_probs=75.5
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~ 97 (309)
=||.|-.+|++. |.++|. ++++++.++|||++|.= +.| +..--.++ .|++|+.+|++|.+=+.
T Consensus 410 WGSIG~t~pAal----------Ga~~A~----~drR~IL~iGDGs~QlT-vQE-iStmiR~gl~p~ifvlNN~GYTIEr~ 473 (557)
T COG3961 410 WGSIGYTLPAAL----------GAALAA----PDRRVILFIGDGSLQLT-VQE-ISTMIRWGLKPIIFVLNNDGYTIERA 473 (557)
T ss_pred hhhcccccHhhh----------hhhhcC----CCccEEEEEcCchhhhh-HHH-HHHHHHcCCCcEEEEEcCCCcEEEeh
Confidence 378899999999 999884 57889999999999642 223 22333445 68889999999964222
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCC---eEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGL---YYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~---~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
.+ ....+..++ .. =+...+.++||- ..... -..-+++..+++.+.+. .+++.+||++..
T Consensus 474 IH--------g~~~~YNdI---~~----Wd~~~l~~afg~~~~~~~~~--~~~~~~l~~~~~~~~~~-~~~i~lIEv~lp 535 (557)
T COG3961 474 IH--------GPTAPYNDI---QS----WDYTALPEAFGAKNGEAKFR--ATTGEELALALDVAFAN-NDRIRLIEVMLP 535 (557)
T ss_pred hc--------CCCcCcccc---cc----cchhhhhhhcCCCCceEEEe--ecChHHHHHHHHHHhcC-CCceEEEEEecC
Confidence 11 111122211 00 011234455443 33101 13456677777776654 278999999987
Q ss_pred ecc
Q 041265 175 KEK 177 (309)
Q Consensus 175 kg~ 177 (309)
+-.
T Consensus 536 ~~D 538 (557)
T COG3961 536 VLD 538 (557)
T ss_pred ccc
Confidence 654
No 144
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=97.71 E-value=0.00013 Score=71.10 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=75.3
Q ss_pred HhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcE-EEEEeCcchhhhhhhhhcccchhhccCCc-ccch-hhhHH
Q 041265 45 GRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKAL-KRLHSNPQFRQLCQEAFSSKDKKQKFGGQ-MHEI-DAFSR 121 (309)
Q Consensus 45 a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~L-i~i~~nn~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~ 121 (309)
+.|+...+.-||+++|||+.. +.+--|..+..+...+ +++.||.+|+-|.+.+ . ..|+. ..+. ++...
T Consensus 455 G~K~a~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQ---m----~~Gg~sf~~~~r~~~~ 525 (617)
T COG3962 455 GAKAAEPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGYGCINRLQ---M----ATGGASFNNLLRDTDH 525 (617)
T ss_pred ccccCCCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCcchhhhhh---h----hcCcchhhhhhhhhcc
Confidence 345556778899999999971 1111122223334444 4568999998877664 1 12221 1111 11111
Q ss_pred --hhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 122 --EIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 122 --~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
..+.-+++.-.+++|-+.. .| +++++|.++|+++|+. .++++|+++|..
T Consensus 526 e~~~~~vDfA~~A~s~Ga~~~-kv--~~i~eL~aAL~~Ak~~--~~ttvi~I~t~P 576 (617)
T COG3962 526 EEEILQVDFAAHAESYGAKAY-KV--GTIEELEAALADAKAS--DRTTVIVIDTDP 576 (617)
T ss_pred cCCCCcccHHHHHhhcCceeE-ec--CCHHHHHHHHHHHHhC--CCCEEEEEecCC
Confidence 1223355667899999998 55 6999999999999987 889999999964
No 145
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=97.55 E-value=0.00053 Score=71.86 Aligned_cols=90 Identities=19% Similarity=0.233 Sum_probs=65.8
Q ss_pred eeeccchHHHHHHHHHHHhhCCCe---eEEeecHHHH---HhHHHHHHHhhhh----CCCCeEEEEeCCCccCCCCCCCC
Q 041265 215 CFDVGIAEQHAVTFAAGLAAEGLK---PFCAIYSSFL---QRCFDQVAHDVDL----QKLPVRFAIDRAGLVGADGPTHC 284 (309)
Q Consensus 215 ~~~~gIaE~~~vg~a~GlA~~G~~---pi~~~~~~F~---~ra~dqi~~~~a~----~~~pv~~~~~~~g~~g~~G~tH~ 284 (309)
++|++.+|++++|+=-|-+..--+ -|...|.||. +..+||-... +. ....++.+.+|+ +-| .|+.|.
T Consensus 629 v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisS-ge~KW~r~sgLv~lLPHg-yEG-QGPEHS 705 (906)
T COG0567 629 VINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISS-GEQKWGRMSGLVMLLPHG-YEG-QGPEHS 705 (906)
T ss_pred EEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeecccccc-HHHHHHHhcCceEEccCC-CCC-CCCcCc
Confidence 689999999999999999986433 3334799996 7888885544 32 356778888874 423 499997
Q ss_pred Ch--hHHHHHhcCCCcEEEEeCCCC
Q 041265 285 GA--FDTTFMACLPNMVVMKDIKLV 307 (309)
Q Consensus 285 ~~--~d~~~~~~iP~~~v~~Ps~~~ 307 (309)
+. +...-|.+=-||+|+.|++|.
T Consensus 706 SaRlER~LQLcaE~NmqV~~pstpa 730 (906)
T COG0567 706 SARLERFLQLCAENNMQVVVPSTPA 730 (906)
T ss_pred cchhHHHHHhhHHhCCEEEecCcHH
Confidence 75 433445666799999999874
No 146
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=97.50 E-value=0.00046 Score=68.56 Aligned_cols=102 Identities=19% Similarity=0.161 Sum_probs=66.9
Q ss_pred eEEEEE--eCCcc-ccchHHHHHHHHhhc--c-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCc
Q 041265 54 HVISVI--VEGAT-IARMSYEAINNAGVL--N-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGS 127 (309)
Q Consensus 54 ~v~~~~--GDG~l-~eG~~~EAln~A~~~--~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (309)
+|+|++ ||++. .+|++||.+|++-.- + .--+-++.||+.+-.++.. .|.. ..+.
T Consensus 319 ~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~---------rGRS----s~yc------- 378 (913)
T KOG0451|consen 319 HVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGD---------RGRS----SAYC------- 378 (913)
T ss_pred ceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCccc---------cccc----chhh-------
Confidence 455554 99997 479999999987542 3 2234445666654433332 1211 1121
Q ss_pred cchhhhhcCCeEEecCCCCCHHHHHHHHHHh----hcCCCCCcEEEEEEeeeccCC
Q 041265 128 RACFFEDLGLYYIGPVDGHNLEDLAYVLKQV----KAIPDPGAVLIHVITEKEKAM 179 (309)
Q Consensus 128 ~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a----~~~~~~~P~~I~~~T~kg~G~ 179 (309)
.+..++++..++ -|||.|.|++..+-+.+ ++- .+-++|.+.+.|-.|+
T Consensus 379 -sDiaK~~~~pvi-HVNGD~PEevvraTrLAf~Yqr~F--RKDvfIdL~CfRrwgH 430 (913)
T KOG0451|consen 379 -SDIAKSIQAPVI-HVNGDDPEEVVRATRLAFRYQREF--RKDVFIDLNCFRRWGH 430 (913)
T ss_pred -hHHHHHhCCCEE-EeCCCCHHHHHHHHHHHHHHHHHh--hhhheeehHHHHHhcc
Confidence 224588899999 99999999999876543 222 5689999999988775
No 147
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=97.48 E-value=0.00032 Score=69.16 Aligned_cols=124 Identities=22% Similarity=0.221 Sum_probs=75.2
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~ 97 (309)
-||.|-..+.+. |.|+|. ++.++|.++|||++++-.- | +..+..|+ .+.+++.+|++|.+-+.
T Consensus 414 wgsIG~svga~l----------G~a~a~----~e~rvilfiGDGs~qlTvQ-e-iStmir~gl~~~if~~NN~GYTIE~~ 477 (561)
T KOG1184|consen 414 WGSIGWSVGATL----------GYAQAA----PEKRVILFIGDGSFQLTVQ-E-ISTMIRWGLKPIIFLINNGGYTIEVE 477 (561)
T ss_pred Eeeccccchhhh----------hhhhcc----CCceEEEEecCccceeeHH-H-HHHHHhcCCCcEEEEEeCCceEEEEe
Confidence 467777777777 888774 5688999999999987543 3 33455666 56778899999965322
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCC---CCHHHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDG---HNLEDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG---~D~~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
.+ +++..++.. -++..++++||=.- |.+.+ +.-+++.++++.....+.++|.+||++-.
T Consensus 478 IH----------~~~Yn~I~~-------Wd~~~l~~afg~~~-gk~~~~~v~~~~e~~~~~~~~~~~~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 478 IH----------DGPYNDIQN-------WDYTALLEAFGAGE-GKYETHKVRTEEELVEAIKDATFEKNDKIRLIEVILP 539 (561)
T ss_pred ec----------CCCcccccc-------chHHHHHHhhcCcc-ceeEEeeeccchHHHHHHhhhhhcccCceEEEEEecC
Confidence 22 222222210 01234566665432 12222 23456666776655334477999999875
Q ss_pred ec
Q 041265 175 KE 176 (309)
Q Consensus 175 kg 176 (309)
+-
T Consensus 540 ~~ 541 (561)
T KOG1184|consen 540 VD 541 (561)
T ss_pred cc
Confidence 43
No 148
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.00052 Score=69.70 Aligned_cols=111 Identities=12% Similarity=0.062 Sum_probs=73.8
Q ss_pred CCCCeEEEEEeCCcc-ccchHHHHHHHHhhcc---CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhc
Q 041265 50 GKNNHVISVIVEGAT-IARMSYEAINNAGVLN---KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEA 125 (309)
Q Consensus 50 ~~~~~v~~~~GDG~l-~eG~~~EAln~A~~~~---~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (309)
+++..-|.+-||++. .+|++||.+.+...=+ .--|-|+.||+.+-.+..- ..+...+
T Consensus 399 ~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR-------------~aRSspY------ 459 (1017)
T KOG0450|consen 399 GKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPR-------------FARSSPY------ 459 (1017)
T ss_pred cceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcc-------------cccCCCC------
Confidence 345567888899997 4799999998876543 3356677777654333221 0011111
Q ss_pred CccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEeeeccCCchh
Q 041265 126 GSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI--PDPGAVLIHVITEKEKAMLPL 182 (309)
Q Consensus 126 ~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~--~~~~P~~I~~~T~kg~G~~~~ 182 (309)
..+..++.+-..+ -||+.|+|++.-+++-|.+. .-++-++|.+.++|-.|+-..
T Consensus 460 --cTDvar~v~aPIF-HVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~ 515 (1017)
T KOG0450|consen 460 --CTDVARVVNAPIF-HVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEI 515 (1017)
T ss_pred --chhHHHHhCCCeE-eecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcc
Confidence 1223466677777 89999999999888755322 136689999999998886543
No 149
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.39 E-value=0.00069 Score=68.48 Aligned_cols=126 Identities=16% Similarity=0.149 Sum_probs=81.6
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~ 96 (309)
++=.+|.+|+++. |++++. ++++|+++||+.+----. .++.+|...+ +.+++|.||. +...|
T Consensus 426 ~t~~mGssig~a~----------g~~~~~-----~k~~va~iGDsTF~HsGi-~~l~nAV~n~~~~~~vvLdN~-~tAMT 488 (640)
T COG4231 426 TTTMMGSSIGIAG----------GLSFAS-----TKKIVAVIGDSTFFHSGI-LALINAVYNKANILVVVLDNR-TTAMT 488 (640)
T ss_pred hhhhccchhhhcc----------cccccc-----CCceEEEeccccccccCc-HHHHHHHhcCCCeEEEEEecc-chhcc
Confidence 3445677788887 777652 388999999999854332 2488888887 4556677775 43333
Q ss_pred hhhhcccchhhccCCcccchhh-hHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDA-FSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVIT 173 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T 173 (309)
-.+ ..++.-....- .... -.....-++.|..++..+|=+|++++.++++++++. .+|.+|+++-
T Consensus 489 GgQ--------p~pg~~~~~~g~~~~~---i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~--~gpsViiak~ 553 (640)
T COG4231 489 GGQ--------PHPGTGVAAEGTKSTA---IVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEV--PGPSVIIAKR 553 (640)
T ss_pred CCC--------CCCCcccccCCCccce---eEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcC--CCceEEEEcC
Confidence 222 12211000000 0000 011334688999999888889999999999999987 7799998764
No 150
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=97.27 E-value=0.0025 Score=62.70 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=67.9
Q ss_pred hhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCc-c--------hhhhhhhhhcccchhhccCC
Q 041265 41 GMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNP-Q--------FRQLCQEAFSSKDKKQKFGG 111 (309)
Q Consensus 41 G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn-~--------~~~~~~~~~~~~~~~~~~~~ 111 (309)
|.|+|.++-..+..|+|+-||++. |-+-=-+..+..+++|+++|+-|| + |.+++... ...+.+
T Consensus 437 Gfalaaa~~~P~~~V~~veGDsaF--GfSaME~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~~-----~~~~~p- 508 (571)
T KOG1185|consen 437 GFALAAALAAPDRKVVCVEGDSAF--GFSAMELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISEQD-----PTLDLP- 508 (571)
T ss_pred hHHHHHHhhCCCCeEEEEecCccc--CcchhhHHHHHHhcCCeEEEEecCCcccccCcccHHHHhhcC-----cccCCC-
Confidence 555555555688999999999998 333333445677888887665543 2 22222000 000111
Q ss_pred cccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 112 QMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
. ..... .-++....++||-+-. .|+ .+++|.++++++-.. +++|++|-+.--+.
T Consensus 509 -~---~~l~~---~~rY~~v~ka~G~kG~-~v~--t~~el~~~l~~a~q~-~~~psvINVlI~p~ 562 (571)
T KOG1185|consen 509 -P---TALLA---NTRYDKVAKAFGGKGY-FVS--TVEELLAALQQACQD-TDKPSVINVLIGPT 562 (571)
T ss_pred -c---ccccc---cccHHHHHHHcCCCce-eeC--CHHHHHHHHHHHHhc-CCCCeEEEEEeccc
Confidence 0 00000 0122345677776654 454 899999999877543 26899998876543
No 151
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=96.93 E-value=0.0042 Score=58.28 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=79.3
Q ss_pred CchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCC-ccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhhh
Q 041265 21 HSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEG-ATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQE 98 (309)
Q Consensus 21 ~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG-~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~~ 98 (309)
.-|.++++|. |+.+|.+ +-.||++.||| +...|.-+ +-.|...+.+++ ++.||.-|+...-.
T Consensus 71 ~~gra~a~at----------Gik~A~~----~l~Viv~gGDG~~~dIG~~~--l~h~~~Rn~dit~iv~DNevYgnTggQ 134 (294)
T COG1013 71 LHGRAAAVAT----------GIKLANP----ALSVIVIGGDGDAYDIGGNH--LIHALRRNHDITYIVVDNEVYGNTGGQ 134 (294)
T ss_pred ccCcchhhHH----------HHHHhcc----CCeEEEEecchhHhhhhhHH--HHHHHHcCCCeEEEEECCeecccCCCc
Confidence 3455666666 8887754 44799999999 77777665 777888786665 45666555332211
Q ss_pred hhcccchhhccCCcccchhhhHHhh-hcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 99 AFSSKDKKQKFGGQMHEIDAFSREI-EAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
. |. .-..+ ......+.=+.. -..+...+.-++|..|+-++-=-+..++.+.++++.+. +||.+|++.+.
T Consensus 135 ~-S~---tTp~G-~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~--~Gps~I~v~sP 204 (294)
T COG1013 135 A-SP---TTPKG-AKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH--KGPSFIDVLSP 204 (294)
T ss_pred c-CC---CCCCC-ceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc--cCCeEEEEecC
Confidence 1 00 00000 000000000000 01133456778999998565555699999999999887 89999999985
No 152
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=96.04 E-value=0.02 Score=55.72 Aligned_cols=127 Identities=20% Similarity=0.254 Sum_probs=80.2
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcc-hhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQ-FRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~-~~~~~ 96 (309)
+-|-+|-|||+|+ |...| ..+..|+=+=||+++.- ..--|..+...+.|+.++.-||. .++.+
T Consensus 522 GLGtMGfGLPAAI----------GAsVA----~P~~iViDIDGDaSF~M--t~~ELat~rq~~~PVKiLiLNNeeqGMVt 585 (675)
T KOG4166|consen 522 GLGTMGFGLPAAI----------GASVA----NPDAIVIDIDGDASFIM--TVQELATIRQENLPVKILILNNEEQGMVT 585 (675)
T ss_pred CccccccCcchhh----------ccccc----CcccEEEeccCCceeee--ehHhhhhhhhcCCceEEEEecchhhhhHH
Confidence 3467788999999 88776 46777888889998742 22224444455678866655552 22222
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
....+..+. ... +.++ ..|++..+.+++|++.. +| ..-++|.+.++++.+. +||+++|+...+-
T Consensus 586 QWq~lFYe~--rys-HThQ--------~nPnf~klA~AmGikal-RV--~K~edL~~k~keflsT--kGPvLleV~v~~k 649 (675)
T KOG4166|consen 586 QWQDLFYEA--RYS-HTHQ--------ENPNFLKLAAAMGIKAL-RV--TKKEDLREKIKEFLST--KGPVLLEVIVPHK 649 (675)
T ss_pred HHHHHHHHh--hhc-cccc--------cCccHHHHHHhcCCchh-ee--ehHHHHHHHHHHHhCC--CCCeEEEEEccCc
Confidence 222100000 000 0000 12444557789999988 55 5788999999999887 9999999998653
No 153
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=95.76 E-value=0.056 Score=52.03 Aligned_cols=95 Identities=15% Similarity=-0.003 Sum_probs=71.8
Q ss_pred CCCceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHH
Q 041265 211 FPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTT 290 (309)
Q Consensus 211 ~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~ 290 (309)
+...+++ .-+|...+++|.|+|..|.|.+..+=...+...+++|-.. +...+|++++....+..+ .|.++..+.|+-
T Consensus 47 ~~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l~~a-~~~e~P~v~v~v~R~~p~-~g~t~~eq~D~~ 123 (352)
T PRK07119 47 VGGVFVQ-AESEVAAINMVYGAAATGKRVMTSSSSPGISLKQEGISYL-AGAELPCVIVNIMRGGPG-LGNIQPSQGDYF 123 (352)
T ss_pred hCCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecCcchHHHHHHHHHHH-HHccCCEEEEEeccCCCC-CCCCcchhHHHH
Confidence 3456788 8899999999999999999999988666777788887665 688999988765443322 355777777765
Q ss_pred HHhc-----CCCcEEEEeCCCCC
Q 041265 291 FMAC-----LPNMVVMKDIKLVL 308 (309)
Q Consensus 291 ~~~~-----iP~~~v~~Ps~~~e 308 (309)
+... --++.|+.|+|+.|
T Consensus 124 ~~~~~~ghgd~~~~vl~p~~~qE 146 (352)
T PRK07119 124 QAVKGGGHGDYRLIVLAPSSVQE 146 (352)
T ss_pred HHHhcCCCCCcceEEEeCCCHHH
Confidence 5432 22489999999876
No 154
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=95.41 E-value=0.085 Score=51.27 Aligned_cols=93 Identities=11% Similarity=0.040 Sum_probs=65.4
Q ss_pred CceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHH
Q 041265 213 IRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFM 292 (309)
Q Consensus 213 ~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~ 292 (309)
..|++.- +|.+.+++|.|.|.+|.|.+..+=+.=+....+++-.. +..++|++++....+..+..-+++.++.|+...
T Consensus 49 ~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~Gl~lm~E~~~~a-~~~e~P~Viv~~~R~gp~tg~p~~~~q~D~~~~ 126 (376)
T PRK08659 49 GVFIQME-DEIASMAAVIGASWAGAKAMTATSGPGFSLMQENIGYA-AMTETPCVIVNVQRGGPSTGQPTKPAQGDMMQA 126 (376)
T ss_pred CEEEEeC-chHHHHHHHHhHHhhCCCeEeecCCCcHHHHHHHHHHH-HHcCCCEEEEEeecCCCCCCCCCCcCcHHHHHH
Confidence 3688888 99999999999999999988876444344556777665 456799998865433312224677677776554
Q ss_pred h-----cCCCcEEEEeCCCCC
Q 041265 293 A-----CLPNMVVMKDIKLVL 308 (309)
Q Consensus 293 ~-----~iP~~~v~~Ps~~~e 308 (309)
+ .+ ++.|+.|+|+.|
T Consensus 127 ~~~~hgd~-~~ivl~p~~~QE 146 (376)
T PRK08659 127 RWGTHGDH-PIIALSPSSVQE 146 (376)
T ss_pred hcccCCCc-CcEEEeCCCHHH
Confidence 4 22 357999999876
No 155
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=95.40 E-value=0.019 Score=52.07 Aligned_cols=92 Identities=14% Similarity=0.023 Sum_probs=56.0
Q ss_pred eeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhc
Q 041265 215 CFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMAC 294 (309)
Q Consensus 215 ~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~ 294 (309)
.+--.-+|...++++.|++..|.|.+..+=..=+..+.|.|... +..++|++++....+..+..+++|....|+...+
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts~~Gl~lm~e~l~~a-~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~- 115 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTATSGPGLNLMAEPLYWA-AGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAAR- 115 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEEECCHHHHHCCCHHHH-HHTT--EEEEEEEB---SSSB--SB-SHHHHHTT-
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEeecCCcccccHhHHHHH-HHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHH-
Confidence 56667799999999999999999988865333233334455443 6788999988764444333467888888876666
Q ss_pred CCCcEEEEeCCCCC
Q 041265 295 LPNMVVMKDIKLVL 308 (309)
Q Consensus 295 iP~~~v~~Ps~~~e 308 (309)
--++.|+.|+|+.|
T Consensus 116 d~~~~vl~p~~~QE 129 (230)
T PF01855_consen 116 DSGWIVLAPSSPQE 129 (230)
T ss_dssp TSS-EEEE--SHHH
T ss_pred hcCeEEEeCCCHHH
Confidence 56778999999866
No 156
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=94.58 E-value=0.13 Score=50.14 Aligned_cols=86 Identities=13% Similarity=0.044 Sum_probs=64.6
Q ss_pred chHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcE
Q 041265 220 IAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMV 299 (309)
Q Consensus 220 IaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~ 299 (309)
=+|.+.+++|.|+|.+|.|.+..+=+.=+..+.|.|... +..++|+++.....+..+ ..++|..+.|+...+. .++.
T Consensus 56 E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl~lm~E~l~~a-a~~~lPiVi~~~~R~~p~-~~~~~~~q~D~~~~~d-~g~i 132 (390)
T PRK08366 56 ESEHSAMAACIGASAAGARAFTATSAQGLALMHEMLHWA-AGARLPIVMVDVNRAMAP-PWSVWDDQTDSLAQRD-TGWM 132 (390)
T ss_pred CCHHHHHHHHHHHHhhCCCeEeeeCcccHHHHhhHHHHH-HhcCCCEEEEEeccCCCC-CCCCcchhhHHHHHhh-cCEE
Confidence 489999999999999999988876444345566777765 688999997764333322 4688888888665555 4889
Q ss_pred EEEeCCCCC
Q 041265 300 VMKDIKLVL 308 (309)
Q Consensus 300 v~~Ps~~~e 308 (309)
++.|+|+.|
T Consensus 133 ~~~~~~~QE 141 (390)
T PRK08366 133 QFYAENNQE 141 (390)
T ss_pred EEeCCCHHH
Confidence 999999866
No 157
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=94.17 E-value=0.2 Score=48.28 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=66.3
Q ss_pred CeEEEEEeCCc-cccchHHHHHHHHhhccCcEE-EEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccch
Q 041265 53 NHVISVIVEGA-TIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRAC 130 (309)
Q Consensus 53 ~~v~~~~GDG~-l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (309)
..||++.|||. ..-|..+ +-.|...+.|++ ++.||.-|+...-.. |. ....+ ........=+..-..+...
T Consensus 152 ~~v~v~gGDG~~ydIG~~~--l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~-S~---tTp~G-a~t~tsp~Gk~~~kkd~~~ 224 (365)
T cd03377 152 KSVWIIGGDGWAYDIGYGG--LDHVLASGENVNILVLDTEVYSNTGGQA-SK---ATPLG-AVAKFAAAGKRTGKKDLGM 224 (365)
T ss_pred cceEEEecchhhhccchhh--HHHHHHcCCCeEEEEECCcccccCCCcC-CC---CCCCc-CcCccCCCCCCCCCcCHHH
Confidence 37999999994 4556544 666666675565 556776665431111 00 00000 0000000000000112345
Q ss_pred hhhhcCCeEEecCC-CCCHHHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 131 FFEDLGLYYIGPVD-GHNLEDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 131 ~f~a~G~~~~~~vD-G~D~~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
.+.++|..|+-++- |-|+.++.++++++.+. +||.+|++.+.
T Consensus 225 ia~a~g~~YVA~~s~~~~~~~~~~~i~eA~~~--~Gps~I~v~sP 267 (365)
T cd03377 225 IAMSYGNVYVAQIALGANDNQTLKAFREAEAY--DGPSLIIAYSP 267 (365)
T ss_pred HHHHcCCCEEEEEecccCHHHHHHHHHHHhcC--CCCEEEEEEcc
Confidence 66788999985553 45999999999999887 99999999985
No 158
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=94.16 E-value=0.27 Score=47.76 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=64.7
Q ss_pred ceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEe-CCCccCCCCCCCCChhHHHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAID-RAGLVGADGPTHCGAFDTTFM 292 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~-~~g~~g~~G~tH~~~~d~~~~ 292 (309)
.++.+- +|.+.+++|.|+|.+|.|.+..+=..=+....++|-.. +...+|++++.. ++|.+. .-++...+.|+...
T Consensus 49 ~~vq~E-~E~aA~~~a~GAs~aG~Ra~taTSg~G~~lm~E~~~~a-~~~e~P~V~~~~~R~Gpst-G~p~~~~q~D~~~~ 125 (375)
T PRK09627 49 TFIQME-DEISGISVALGASMSGVKSMTASSGPGISLKAEQIGLG-FIAEIPLVIVNVMRGGPST-GLPTRVAQGDVNQA 125 (375)
T ss_pred EEEEcC-CHHHHHHHHHHHHhhCCCEEeecCCchHHHHhhHHHHH-HhccCCEEEEEeccCCCcC-CCCCccchHHHHHH
Confidence 445444 99999999999999999988866443333445666665 577899998654 445522 24677677777666
Q ss_pred h-----cCCCcEEEEeCCCCC
Q 041265 293 A-----CLPNMVVMKDIKLVL 308 (309)
Q Consensus 293 ~-----~iP~~~v~~Ps~~~e 308 (309)
+ ..|.+ |++|+|+.|
T Consensus 126 ~~~~hgd~~~i-vl~p~~~qE 145 (375)
T PRK09627 126 KNPTHGDFKSI-ALAPGSLEE 145 (375)
T ss_pred hcCCCCCcCcE-EEeCCCHHH
Confidence 6 56766 999999876
No 159
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=93.52 E-value=0.44 Score=41.25 Aligned_cols=95 Identities=12% Similarity=0.052 Sum_probs=51.9
Q ss_pred CceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHH---hHHHHH--HHhhhh-----CC-CCeEEEEeCCCc-cCCCC
Q 041265 213 IRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQ---RCFDQV--AHDVDL-----QK-LPVRFAIDRAGL-VGADG 280 (309)
Q Consensus 213 ~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~---ra~dqi--~~~~a~-----~~-~pv~~~~~~~g~-~g~~G 280 (309)
++.+..-++|..+.|...|..+.|-+-++.+|=+|+. -++.|- +...+. .. ..+.++.+.... -.+.|
T Consensus 59 ~G~V~e~LSEh~c~G~leGY~LtGrhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG 138 (179)
T PF03894_consen 59 GGRVMEVLSEHQCQGWLEGYLLTGRHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNG 138 (179)
T ss_dssp S-SEEE-S-HHHHHHHHHHHHHTT-EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-
T ss_pred CCeeeeecCHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCC
Confidence 4666788999999999999999999888888777763 333331 111111 11 234555554333 25789
Q ss_pred CCCCChhHHHH-HhcCCC-cEEEEeCCCC
Q 041265 281 PTHCGAFDTTF-MACLPN-MVVMKDIKLV 307 (309)
Q Consensus 281 ~tH~~~~d~~~-~~~iP~-~~v~~Ps~~~ 307 (309)
-|||...-+.. +.--|+ ++||.|+|+.
T Consensus 139 ~SHQdPgfi~~~~~k~~~~~RvylPpDAN 167 (179)
T PF03894_consen 139 FSHQDPGFIDHVLNKKPDVVRVYLPPDAN 167 (179)
T ss_dssp GGG---THHHHHHCC--T-EEEEE-SSHH
T ss_pred cccCCChHHHHHHhcCcccceeecCCcHh
Confidence 99998754433 333343 5899999964
No 160
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=93.19 E-value=0.25 Score=50.54 Aligned_cols=94 Identities=14% Similarity=0.051 Sum_probs=66.3
Q ss_pred ceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHh
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMA 293 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~ 293 (309)
-.+--.=+|.+.+++|.|++.+|.|.+..|=..=+..+.|.|... +..++|++++....+.....-+|+..+.|+-..+
T Consensus 238 ~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l~~a-~~~~~P~Vi~~~~R~gpstg~~t~~eq~D~~~~~ 316 (562)
T TIGR03710 238 VVVVQAEDEIAAINMAIGASYAGARAMTATSGPGFALMTEALGLA-GMTETPLVIVDVQRGGPSTGLPTKTEQSDLLFAL 316 (562)
T ss_pred cEEEeeccHHHHHHHHHhHHhcCCceeecCCCCChhHhHHHHhHH-HhccCCEEEEEcccCCCCCCCCCCccHHHHHHHh
Confidence 455556699999999999999999988865333233556777554 5688999988654433222246887888866655
Q ss_pred cCC----CcEEEEeCCCCC
Q 041265 294 CLP----NMVVMKDIKLVL 308 (309)
Q Consensus 294 ~iP----~~~v~~Ps~~~e 308 (309)
.-- ++.|++|+|+.|
T Consensus 317 ~~~hgd~~~ivl~p~~~qE 335 (562)
T TIGR03710 317 YGGHGEFPRIVLAPGSPEE 335 (562)
T ss_pred cCCCCCcCceEEcCCCHHH
Confidence 433 489999999876
No 161
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=92.55 E-value=0.3 Score=46.47 Aligned_cols=132 Identities=19% Similarity=0.221 Sum_probs=82.8
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLCQ 97 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~~ 97 (309)
-+|++|-.||+|+ |+-.| ..+..++++-||-.++ -..|-|...+.++.|-+.+..||.|-.+..
T Consensus 417 qagplgwtipaal----------gv~~a----dp~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnaylglir 480 (592)
T COG3960 417 QAGPLGWTIPAAL----------GVCAA----DPKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYLGLIR 480 (592)
T ss_pred ccCCcccccchhh----------ceeec----CCCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHHHHHH
Confidence 4678888999999 88655 4667799999999885 457889999999999998888887755433
Q ss_pred hhhcccchhhccCC--cccch-hhhH----HhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC--CCCCcEE
Q 041265 98 EAFSSKDKKQKFGG--QMHEI-DAFS----REIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI--PDPGAVL 168 (309)
Q Consensus 98 ~~~~~~~~~~~~~~--~~~~~-~~~~----~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~--~~~~P~~ 168 (309)
.. . +.++. .++-. +.+. +++ --+.....|++|.+.++. .+.+++..++++++.. +..-|++
T Consensus 481 qa---q---r~f~mdy~v~laf~nin~~~~~gy-gvdhv~v~eglgckairv---~~p~e~a~af~~a~~lm~eh~vpvv 550 (592)
T COG3960 481 QA---Q---RAFDMDYCVQLAFENINSSEVNGY-GVDHVKVAEGLGCKAIRV---FKPEDIAPAFEQAKALMAQHRVPVV 550 (592)
T ss_pred HH---H---hcCCccceeeehhhccCCcccccc-CccceeehhccCceeEEe---cChHHhhHHHHHHHHHHHhcCCCee
Confidence 32 0 11111 01000 1110 000 011233456677776633 5678888888776532 2366999
Q ss_pred EEEEeee
Q 041265 169 IHVITEK 175 (309)
Q Consensus 169 I~~~T~k 175 (309)
||+.-.|
T Consensus 551 ve~iler 557 (592)
T COG3960 551 VEVILER 557 (592)
T ss_pred eehHHHH
Confidence 9887654
No 162
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=92.40 E-value=0.47 Score=46.63 Aligned_cols=91 Identities=15% Similarity=0.069 Sum_probs=66.8
Q ss_pred ceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHh
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMA 293 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~ 293 (309)
.++.+- +|.+.++++.|+|.+|.|.+..+=+.=+..+.|.|... +..++|++++....|... .-+++.+..|+...+
T Consensus 58 ~~vq~E-~E~~A~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l~~a-a~~~~P~V~~~~~R~~~~-~~~i~~d~~D~~~~r 134 (407)
T PRK09622 58 EFVMVE-SEHAAMSACVGAAAAGGRVATATSSQGLALMVEVLYQA-SGMRLPIVLNLVNRALAA-PLNVNGDHSDMYLSR 134 (407)
T ss_pred EEEeec-cHHHHHHHHHHHHhhCcCEEeecCcchHHHHhhHHHHH-HHhhCCEEEEEeccccCC-CcCCCchHHHHHHHh
Confidence 355544 99999999999999999988765444344556777665 688999888776555522 256777777765555
Q ss_pred cCCCcEEEEeCCCCC
Q 041265 294 CLPNMVVMKDIKLVL 308 (309)
Q Consensus 294 ~iP~~~v~~Ps~~~e 308 (309)
-.++.+++|+|+.|
T Consensus 135 -~~g~ivl~p~s~QE 148 (407)
T PRK09622 135 -DSGWISLCTCNPQE 148 (407)
T ss_pred -cCCeEEEeCCCHHH
Confidence 57799999999876
No 163
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=91.83 E-value=0.59 Score=51.53 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=68.5
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+.=++|..++.++ |++.+. .+.++|+++|||..----.. ||.+|...+.|++ +|.+|... ..|
T Consensus 466 ~~~~MG~~g~~~~----------G~a~~~----~~~~v~a~iGDgTf~HSG~~-al~~AV~~~~nit~~IL~N~~t-AMT 529 (1159)
T PRK13030 466 GLTQMGGEGVDWI----------GHAPFT----ETKHVFQNLGDGTYFHSGSL-AIRQAVAAGANITYKILYNDAV-AMT 529 (1159)
T ss_pred eeeccCccchhhc----------eecccc----CCCCEEEEeccchhhhcCHH-HHHHHHhcCCCeEEEEEeCCcc-ccc
Confidence 3345666667777 887662 34579999999998644444 8888888786655 56677532 222
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecC--CCCC-----HH--------HHHHHHHHhh-c
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPV--DGHN-----LE--------DLAYVLKQVK-A 160 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~v--DG~D-----~~--------~l~~al~~a~-~ 160 (309)
-. |..++.+ ++..+ ....++.|.+.+..| |=.| +. +..+++++.. +
T Consensus 530 Gg--------Qp~~g~i-~v~~i---------~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~ 591 (1159)
T PRK13030 530 GG--------QPVDGSI-SVPQI---------ARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRE 591 (1159)
T ss_pred CC--------CCCCCCC-CHHHH---------HHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhc
Confidence 11 2334432 12222 224577888877455 3222 33 4444554443 4
Q ss_pred CCCCCcEEEEEE
Q 041265 161 IPDPGAVLIHVI 172 (309)
Q Consensus 161 ~~~~~P~~I~~~ 172 (309)
. +||++|+.+
T Consensus 592 ~--~GvsViI~~ 601 (1159)
T PRK13030 592 T--PGVTVLIYD 601 (1159)
T ss_pred C--CCcEEEEEc
Confidence 4 678887754
No 164
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=91.45 E-value=0.92 Score=38.00 Aligned_cols=92 Identities=13% Similarity=0.098 Sum_probs=59.5
Q ss_pred CceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCC--CCCCCChhHHH
Q 041265 213 IRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGAD--GPTHCGAFDTT 290 (309)
Q Consensus 213 ~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~--G~tH~~~~d~~ 290 (309)
-+++.+- .|++.+.+|.|.++.|.++++.+-.+=+..+.+.|.+.. ..+.|++++....+..+.. ...|+..+...
T Consensus 42 i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gpG~~n~~~~l~~a~-~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~ 119 (160)
T cd07034 42 GVVVQAE-SEHAAAEAAIGASAAGARAMTATSGPGLNLMAEALYLAA-GAELPLVIVVAQRPGPSTGLPKPDQSDLMAAR 119 (160)
T ss_pred cEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcchHHHHHHHHHHHH-hCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHH
Confidence 4677777 999999999999998877444566666777888887763 4679999997655443221 12233344433
Q ss_pred HHhcCCCcEEEEeCCCCC
Q 041265 291 FMACLPNMVVMKDIKLVL 308 (309)
Q Consensus 291 ~~~~iP~~~v~~Ps~~~e 308 (309)
+++. -.-++.|.++.|
T Consensus 120 ~~~~--~~~~~~~~~~~~ 135 (160)
T cd07034 120 YGGH--PWPVLAPSSVQE 135 (160)
T ss_pred hCCC--CEEEEeCCCHHH
Confidence 4432 445555665543
No 165
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=90.81 E-value=0.89 Score=50.16 Aligned_cols=119 Identities=14% Similarity=0.112 Sum_probs=69.8
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcE-EEEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKAL-KRLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~L-i~i~~nn~~~~~~ 96 (309)
+.=++|...+.++ |++.+ ..+.++|.++|||..----.. |+..|...+.|+ ++|.+|...++ |
T Consensus 479 ~~~~MG~eg~~~~----------G~a~f----~~~~hv~a~iGDgTffHSG~~-al~~AV~~~~nit~~IL~N~~vAM-T 542 (1165)
T PRK09193 479 TFTQMGGEGVPWI----------GQAPF----TDEKHVFQNLGDGTYFHSGLL-AIRAAVAAGVNITYKILYNDAVAM-T 542 (1165)
T ss_pred eeeccCCcchhhc----------eeccc----cCCCcEEEEeccccchhcCHH-HHHHHHhcCCCeEEEEEeCCcccc-c
Confidence 4455666677777 77765 234679999999997543333 476777767555 46677763322 1
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecC--CCCCHHHH--------------HHHHHHhh-
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPV--DGHNLEDL--------------AYVLKQVK- 159 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~v--DG~D~~~l--------------~~al~~a~- 159 (309)
-. |..++.+ ...+ .....++.|.+.+..| |=.+++.. .+++++..
T Consensus 543 Gg--------Q~~~g~~-~~~~---------i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr 604 (1165)
T PRK09193 543 GG--------QPVDGGL-SVPQ---------ITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELR 604 (1165)
T ss_pred CC--------CCCCCCc-chhh---------HHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHh
Confidence 11 2333321 1112 2345688898887566 55666555 45555443
Q ss_pred cCCCCCcEEEEEE
Q 041265 160 AIPDPGAVLIHVI 172 (309)
Q Consensus 160 ~~~~~~P~~I~~~ 172 (309)
+. +|+++|+.+
T Consensus 605 ~~--~GvsViI~~ 615 (1165)
T PRK09193 605 EI--PGVTVLIYD 615 (1165)
T ss_pred cC--CCcEEEEEc
Confidence 44 778777654
No 166
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=90.51 E-value=0.88 Score=45.98 Aligned_cols=45 Identities=24% Similarity=0.337 Sum_probs=35.2
Q ss_pred chhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccC
Q 041265 129 ACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKA 178 (309)
Q Consensus 129 ~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G 178 (309)
.-..+.||++|. .+ +++.++.++++..-.. .+=++||++|.|-.+
T Consensus 506 ~~la~~y~l~y~-~~--~s~~~l~~~~~~~~~~--~g~~viEvkt~r~~~ 550 (566)
T COG1165 506 AHLAATYGLEYH-RP--QSWDELGEALDQAWRR--SGTTVIEVKTDRSDG 550 (566)
T ss_pred HHHHHHhCcccc-cc--CcHHHHHHHHhhhccC--CCcEEEEEecChhHH
Confidence 445677899987 43 6899999999887654 668999999997654
No 167
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=89.66 E-value=0.81 Score=47.15 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=63.4
Q ss_pred eeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhh--hCCCCeEEEEeCCCccCCCCCCCCChhHHHHH
Q 041265 215 CFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVD--LQKLPVRFAIDRAGLVGADGPTHCGAFDTTFM 292 (309)
Q Consensus 215 ~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a--~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~ 292 (309)
++.-..+|...+.++.|.+.+|.|.++.+=..=+..+.|+|... + -+..|++++.... .| .++++..+.|..+.
T Consensus 48 ~~~~~~~E~~a~~~~~GAs~aG~ra~t~ts~~Gl~~~~e~l~~~-~~~g~~~~iV~~~~~~--~g-p~~~~~~q~d~~~~ 123 (595)
T TIGR03336 48 YFEWSVNEKVAVEVAAGAAWSGLRAFCTMKHVGLNVAADPLMTL-AYTGVKGGLVVVVADD--PS-MHSSQNEQDTRHYA 123 (595)
T ss_pred EEEECcCHHHHHHHHHHHHhcCcceEEEccCCchhhhHHHhhhh-hhhcCcCceEEEEccC--CC-CccchhhHhHHHHH
Confidence 44555589999999999999999999876444345666777653 4 3467777776543 22 35777777776555
Q ss_pred hcCCCcEEEEeCCCCC
Q 041265 293 ACLPNMVVMKDIKLVL 308 (309)
Q Consensus 293 ~~iP~~~v~~Ps~~~e 308 (309)
+. .++-|+.|+|+.|
T Consensus 124 ~~-~~~~vl~p~~~qE 138 (595)
T TIGR03336 124 KF-AKIPCLEPSTPQE 138 (595)
T ss_pred Hh-cCCeEECCCCHHH
Confidence 54 5888999999876
No 168
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=89.32 E-value=1.4 Score=43.13 Aligned_cols=86 Identities=19% Similarity=0.087 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcE
Q 041265 220 IAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMV 299 (309)
Q Consensus 220 IaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~ 299 (309)
=+|.+.++++.|.|..|.|.+..+=+.=+..+.|.|... +..++|++++....++.. .-.+|.+..|....+..+ +.
T Consensus 57 EsE~aA~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l~~a-ag~~lP~V~vv~~R~~~~-p~~i~~d~~D~~~~rd~g-~~ 133 (394)
T PRK08367 57 ESEHSAISACVGASAAGVRTFTATASQGLALMHEVLFIA-AGMRLPIVMAIGNRALSA-PINIWNDWQDTISQRDTG-WM 133 (394)
T ss_pred CCHHHHHHHHHHHHhhCCCeEeeeccchHHHHhhHHHHH-HHccCCEEEEECCCCCCC-CCCcCcchHHHHhccccC-eE
Confidence 489999999999999999988766554455666777665 789999999875444422 235676777755555543 66
Q ss_pred EEEeCCCCC
Q 041265 300 VMKDIKLVL 308 (309)
Q Consensus 300 v~~Ps~~~e 308 (309)
+++|+|+.|
T Consensus 134 ~~~a~~~QE 142 (394)
T PRK08367 134 QFYAENNQE 142 (394)
T ss_pred EEeCCCHHH
Confidence 788888765
No 169
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=88.94 E-value=2 Score=41.55 Aligned_cols=92 Identities=12% Similarity=0.076 Sum_probs=67.4
Q ss_pred ceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHh
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMA 293 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~ 293 (309)
.++++ =+|.+.++++.|.++.|.|.+..+-..=+....+.|... +.+..|++++....++....-+++....|+...+
T Consensus 49 ~~vq~-EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~Lm~E~l~~a-~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D~~~~r 126 (365)
T COG0674 49 VFVQM-ESEIGAISAVIGASYAGARAFTATSGQGLLLMAEALGLA-AGTETPLVIVVAQRPLPSTGLPIKGDQSDLMAAR 126 (365)
T ss_pred EEEEe-ccHHHHHHHHHHHHhhCcceEeecCCccHHHHHHHHHHH-HhccCCeEEEEeccCcCCCcccccccHHHHHHHH
Confidence 34443 379999999999999999988877655444555666554 6889999998776656333345898899988877
Q ss_pred cCCCcEEEEeCCCCC
Q 041265 294 CLPNMVVMKDIKLVL 308 (309)
Q Consensus 294 ~iP~~~v~~Ps~~~e 308 (309)
.. ++.+++=+|..|
T Consensus 127 ~~-g~~~~~~~s~qE 140 (365)
T COG0674 127 DT-GFPILVSASVQE 140 (365)
T ss_pred cc-CceEEeeccHHH
Confidence 76 777777666544
No 170
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=88.82 E-value=1.1 Score=43.45 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=53.8
Q ss_pred ceeeccchHHHHHHHHHHHhhC-CCeeEEeecHHHHHhHHHHHHHh--hhhCCCCeEEEEeCCCccC-CCCCCC--CChh
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAE-GLKPFCAIYSSFLQRCFDQVAHD--VDLQKLPVRFAIDRAGLVG-ADGPTH--CGAF 287 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~-G~~pi~~~~~~F~~ra~dqi~~~--~a~~~~pv~~~~~~~g~~g-~~G~tH--~~~~ 287 (309)
|++-+ -.|...||+|+|+.+. |.+|++++-.+=+..+...|..- .-..+.|+.++++..|-.| .|=++| |+.-
T Consensus 28 ~~i~~-~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~~ 106 (361)
T TIGR03297 28 RHVIA-ANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGRI 106 (361)
T ss_pred eEEec-CCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhHH
Confidence 55443 4599999999999998 99999986444344455554322 1235889999998887755 456888 4543
Q ss_pred HHHHHhc
Q 041265 288 DTTFMAC 294 (309)
Q Consensus 288 d~~~~~~ 294 (309)
-..+|..
T Consensus 107 t~~lL~~ 113 (361)
T TIGR03297 107 TLSLLDA 113 (361)
T ss_pred HHHHHHH
Confidence 3344443
No 171
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=88.78 E-value=1.5 Score=48.84 Aligned_cols=113 Identities=12% Similarity=0.159 Sum_probs=66.7
Q ss_pred CeEEEEEeCCc-cccchHHHHHHHHhhccCcEE-EEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccch
Q 041265 53 NHVISVIVEGA-TIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRAC 130 (309)
Q Consensus 53 ~~v~~~~GDG~-l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (309)
..++++.|||. ...|.-+ +-.+...+.+++ ++.||.-|+...-.. |. ....+ .+......=+..-..+...
T Consensus 952 ~sv~~~~GDG~~~diG~~~--l~~~~~r~~~v~~i~~dne~Y~nTggQ~-S~---~tp~g-~~t~~~~~g~~~~kkd~~~ 1024 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYGG--LDHVLASGKDVNVLVMDTEVYSNTGGQS-SK---ATPTG-AIAKFAAAGKRTSKKDLGM 1024 (1165)
T ss_pred ceeEEEecchhhhccCccc--hHHHHHcCCCeEEEEECCcccccCCCcC-CC---CCCCc-CccccCCCCCCCCCcCHHH
Confidence 36999999994 4555443 666666665554 567777775432111 00 00000 0000000000000112344
Q ss_pred hhhhcCCeEEecCC-CCCHHHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 131 FFEDLGLYYIGPVD-GHNLEDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 131 ~f~a~G~~~~~~vD-G~D~~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
.+.++|..|+-.+- |-++.++.++++++.+. +||.+|++-+.
T Consensus 1025 ~a~~~g~~yvA~~~~~~~~~~~~~~~~~A~~~--~G~s~i~~~~p 1067 (1165)
T TIGR02176 1025 MAMTYGYVYVAQVSMGANMQQTLKAFREAEAY--DGPSIVIAYSP 1067 (1165)
T ss_pred HHHHCCCCEEEEEecccCHHHHHHHHHHHHcC--CCCEEEEEECC
Confidence 56788999986665 67999999999999887 99999999985
No 172
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=83.59 E-value=0.36 Score=40.34 Aligned_cols=91 Identities=16% Similarity=0.144 Sum_probs=55.0
Q ss_pred eeeccc-hHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCC----CChhHH
Q 041265 215 CFDVGI-AEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTH----CGAFDT 289 (309)
Q Consensus 215 ~~~~gI-aE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH----~~~~d~ 289 (309)
+.+.+. +|..-+|+++|+.++|++|-..+-.+=+......|-.---..+.|..++++|.|...++=+.+ ....++
T Consensus 43 i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~ki 122 (172)
T COG4032 43 IPEIPVTREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKI 122 (172)
T ss_pred cccccccchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccchhhcCCccccccchhhHHH
Confidence 444443 588889999999999999998765443433333322221235789999999998854322222 123444
Q ss_pred HHHhcCCCcEEEEeCC
Q 041265 290 TFMACLPNMVVMKDIK 305 (309)
Q Consensus 290 ~~~~~iP~~~v~~Ps~ 305 (309)
.--..+|-.++..|..
T Consensus 123 Le~~~lpt~t~~~p~E 138 (172)
T COG4032 123 LEGLELPTYTIIGPEE 138 (172)
T ss_pred HhhcCCcccccCCHHH
Confidence 4444556555555543
No 173
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=82.85 E-value=6 Score=32.77 Aligned_cols=83 Identities=16% Similarity=0.088 Sum_probs=56.3
Q ss_pred ceeeccchHHHHHHHHHHHhhCC-CeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAEG-LKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTF 291 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~G-~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~ 291 (309)
|++. ...|...+.+|.|.++.+ ...++. +..+=+..+...|.+. ...+.|++++....+.....-.+||..+...+
T Consensus 36 ~~i~-~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A-~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~ 113 (155)
T cd07035 36 RYIL-VRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANA-YLDSIPLLVITGQRPTAGEGRGAFQEIDQVAL 113 (155)
T ss_pred EEEE-eCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHH-HhhCCCEEEEeCCCccccccCCcccccCHHHH
Confidence 4444 449999999999999974 455554 3455456667777775 45689999998765553322334666777778
Q ss_pred HhcCCCc
Q 041265 292 MACLPNM 298 (309)
Q Consensus 292 ~~~iP~~ 298 (309)
++.+-.+
T Consensus 114 ~~~~~~~ 120 (155)
T cd07035 114 FRPITKW 120 (155)
T ss_pred HHHHhce
Confidence 8877655
No 174
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=82.50 E-value=6.1 Score=43.89 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=64.6
Q ss_pred CCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhhh
Q 041265 20 GHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQE 98 (309)
Q Consensus 20 G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~~ 98 (309)
-++|...+..+ |++.. ..+.++|.++|||...---.. |+.+|...+.|++ +|.+|...++ |-
T Consensus 495 ~~MGgeg~~~~----------G~a~f----~~~~hv~aniGDgTffHSG~~-alr~AV~~~~nit~kIL~N~avAM-TG- 557 (1186)
T PRK13029 495 SQMGGEGVAWI----------GQMPF----SRRRHVFQNLGDGTYFHSGLL-AIRQAIAAGVNITYKILYNDAVAM-TG- 557 (1186)
T ss_pred eccCcchhhhe----------eeccc----CCCCCEEEEeccccchhcCHH-HHHHHHhcCCCEEEEEEeCcchhc-cC-
Confidence 45555566666 77655 234679999999998543333 4777777675554 5677763322 11
Q ss_pred hhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCC--CCCHH--------------HHHHHHHH-hhcC
Q 041265 99 AFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVD--GHNLE--------------DLAYVLKQ-VKAI 161 (309)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vD--G~D~~--------------~l~~al~~-a~~~ 161 (309)
-|..++.+ ++..+ ....++.|.+.+..|| =.+++ +..+++++ .++.
T Consensus 558 -------gQp~~G~~-~v~~i---------~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~ 620 (1186)
T PRK13029 558 -------GQPVDGVL-TVPQI---------ARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREV 620 (1186)
T ss_pred -------CCCCCCcC-CHHHH---------HHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcC
Confidence 12334432 12232 2245778888775555 22333 33344443 3344
Q ss_pred CCCCcEEEEEE
Q 041265 162 PDPGAVLIHVI 172 (309)
Q Consensus 162 ~~~~P~~I~~~ 172 (309)
+|+++|+.+
T Consensus 621 --~GvsViI~~ 629 (1186)
T PRK13029 621 --PGVSVLIYD 629 (1186)
T ss_pred --CCcEEEEEc
Confidence 678877654
No 175
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=80.76 E-value=1.5 Score=44.62 Aligned_cols=47 Identities=34% Similarity=0.317 Sum_probs=37.9
Q ss_pred chhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 129 ACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 129 ~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
...|+++|..+++.+|+|...-..+-++++++..+- |++++..|.++
T Consensus 238 ~~t~~g~G~~~ig~~~~Hg~pl~~~~~~~~k~~~~~-P~~~~~v~~~~ 284 (632)
T KOG0523|consen 238 ATTFIGRGSPYIGSESVHGAPLGEDDVERVKSIKGL-PVLIFVVPEKV 284 (632)
T ss_pred eeeeeecCccccccccccCCcchhhHHHHHHhhcCC-cceeEEecccc
Confidence 557899999999999999988888777777765323 99999988743
No 176
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=80.32 E-value=18 Score=33.57 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=29.1
Q ss_pred eEEEEEeCCc--cccchHHHHHHHHhhccCcEE-EEEeCc
Q 041265 54 HVISVIVEGA--TIARMSYEAINNAGVLNKALK-RLHSNP 90 (309)
Q Consensus 54 ~v~~~~GDG~--l~eG~~~EAln~A~~~~~~Li-~i~~nn 90 (309)
.+++++.||+ .++|..-+++.-|...+-.++ ++.|+.
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 7999999999 999999888888877775444 445554
No 177
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=80.13 E-value=12 Score=30.67 Aligned_cols=102 Identities=13% Similarity=0.133 Sum_probs=53.4
Q ss_pred hhHhHhHhcCCCCeEEEEE-eCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhh
Q 041265 41 GMAVGRDLLGKNNHVISVI-VEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAF 119 (309)
Q Consensus 41 G~A~a~k~~~~~~~v~~~~-GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (309)
++|.+.-+.+. ..++++. |-|.+ -..+++..|...+.|++++....+.... ..+..+..+.
T Consensus 49 ~~A~G~a~~~~-~~v~~~~~gpg~~---~~~~~l~~a~~~~~Pvl~i~~~~~~~~~-------------~~~~~q~~~~- 110 (154)
T cd06586 49 GAAAGYARAGG-PPVVIVTSGTGLL---NAINGLADAAAEHLPVVFLIGARGISAQ-------------AKQTFQSMFD- 110 (154)
T ss_pred HHHHHHHHhhC-CEEEEEcCCCcHH---HHHHHHHHHHhcCCCEEEEeCCCChhhh-------------ccCcccccCH-
Confidence 55555444444 3233333 88865 4778888787777899988755432110 0001111111
Q ss_pred HHhhhcCccchhhhhcCC-eEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 120 SREIEAGSRACFFEDLGL-YYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 120 ~~~~~~~~~~~~f~a~G~-~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
...++...+ .+.-+-+.+..+.+.++++.+... .+|++|.+
T Consensus 111 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~--~gPv~l~i 152 (154)
T cd06586 111 ---------LGMYRSIPEANISSPSPAELPAGIDHAIRTAYAS--QGPVVVRL 152 (154)
T ss_pred ---------HHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcC--CCCEEEEc
Confidence 112333333 332122334466677777777665 78999864
No 178
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=74.92 E-value=5.5 Score=41.03 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=63.9
Q ss_pred CceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCC--CCeEEEEeCCCccCCCCCCC--CChhH
Q 041265 213 IRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQK--LPVRFAIDRAGLVGADGPTH--CGAFD 288 (309)
Q Consensus 213 ~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~--~pv~~~~~~~g~~g~~G~tH--~~~~d 288 (309)
+-+++.+..|.-...+|.|.+..|.+-++.+=-.=+.++.|.+++. ++.+ .-++++. +.|=..| |...|
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKhVGlNvAsDpl~s~-ay~Gv~GGlviv~------aDDpg~~SSqneqd 130 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMKHVGLNVASDPLMSL-AYAGVTGGLVIVV------ADDPGMHSSQNEQD 130 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEecccccccchhhhhhh-hhcCccccEEEEE------ccCCCcccccchhH
Confidence 6799999999999999999999999988765433357888988776 5553 2233332 2222223 33455
Q ss_pred HHHHhcCCCcEEEEeCCCCC
Q 041265 289 TTFMACLPNMVVMKDIKLVL 308 (309)
Q Consensus 289 ~~~~~~iP~~~v~~Ps~~~e 308 (309)
--++.....+-|+.|+|+.|
T Consensus 131 sr~y~~~a~iPvLeP~d~Qe 150 (640)
T COG4231 131 SRAYGKFALIPVLEPSDPQE 150 (640)
T ss_pred hHHHHHhcCceeecCCChHH
Confidence 56788888899999999876
No 179
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=73.40 E-value=53 Score=27.42 Aligned_cols=78 Identities=17% Similarity=0.300 Sum_probs=45.9
Q ss_pred cchHHHHHH-HHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCccc-chhhhHHhhhcCccchhhhh-cCCeEEec
Q 041265 66 ARMSYEAIN-NAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMH-EIDAFSREIEAGSRACFFED-LGLYYIGP 142 (309)
Q Consensus 66 eG~~~EAln-~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~a-~G~~~~~~ 142 (309)
-...+|.+. .++..+.|++++....++.. ..++..+ ..++.. .|+. -|+.++.+
T Consensus 74 ~~ra~dqi~~~~a~~~~pv~~~~~~~g~~~-------------~~~G~tH~~~~~~a----------~~~~iPg~~v~~P 130 (156)
T cd07033 74 LQRAYDQIRHDVALQNLPVKFVGTHAGISV-------------GEDGPTHQGIEDIA----------LLRAIPNMTVLRP 130 (156)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCcEec-------------CCCCcccchHHHHH----------HhcCCCCCEEEec
Confidence 467888888 77777789988766554321 0112222 222221 1222 28888766
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 143 VDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 143 vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
-|..++...++++.+. ++|++|.+
T Consensus 131 ---s~~~~~~~ll~~a~~~--~~P~~irl 154 (156)
T cd07033 131 ---ADANETAAALEAALEY--DGPVYIRL 154 (156)
T ss_pred ---CCHHHHHHHHHHHHhC--CCCEEEEe
Confidence 5666777777777665 66998854
No 180
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=72.76 E-value=18 Score=30.71 Aligned_cols=83 Identities=14% Similarity=0.101 Sum_probs=55.0
Q ss_pred ceeeccchHHHHHHHHHHHhhCCC-eeEEee-cHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccC-CCCCCCCChhHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAEGL-KPFCAI-YSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVG-ADGPTHCGAFDTT 290 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~G~-~pi~~~-~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g-~~G~tH~~~~d~~ 290 (309)
|++. ...|++.+.+|.|.++.+- ..++.+ ..+=+..+...|.+. -..+.|++++....+... ..+..|+..+...
T Consensus 41 ~~i~-~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~~A-~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~ 118 (172)
T PF02776_consen 41 RFIP-VRHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGLANA-YADRIPVLVITGQRPSAGEGRGAFQQEIDQQS 118 (172)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHHHH-HHTT-EEEEEEEESSGGGTTTTSTTSSTHHHH
T ss_pred eeec-ccCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHHhhc-ccceeeEEEEecccchhhhcccccccchhhcc
Confidence 4554 6799999999999998644 444443 433245555566554 356899999987666532 2466676777788
Q ss_pred HHhcCCCc
Q 041265 291 FMACLPNM 298 (309)
Q Consensus 291 ~~~~iP~~ 298 (309)
+++.+-.+
T Consensus 119 ~~~~~~k~ 126 (172)
T PF02776_consen 119 LFRPVTKW 126 (172)
T ss_dssp HHGGGSSE
T ss_pred hhccccch
Confidence 88887755
No 181
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=72.38 E-value=38 Score=28.93 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=22.0
Q ss_pred CCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEE
Q 041265 136 GLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIH 170 (309)
Q Consensus 136 G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~ 170 (309)
|+.++.+ -|..+....++.+.+. ++|+++.
T Consensus 135 g~~V~~P---sd~~e~~~~l~~~~~~--~~P~~~~ 164 (167)
T cd07036 135 GLKVVAP---STPYDAKGLLKAAIRD--DDPVIFL 164 (167)
T ss_pred CCEEEee---CCHHHHHHHHHHHHhC--CCcEEEE
Confidence 8999866 4566666667777665 7899885
No 182
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=71.51 E-value=19 Score=30.39 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=40.5
Q ss_pred cchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCcc
Q 041265 219 GIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLV 276 (309)
Q Consensus 219 gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~ 276 (309)
.-.|...+++|+|..+.|.+|.+.+-.+=+..+...|....-..+.||+++.+.-|..
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~rg~~ 97 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILMQSSGLGNSINALASLNKTYGIPLPILASWRGVY 97 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEEeCCcHHHHHHHHHHHHHcCCCCEEEEEeccCCC
Confidence 6678888999999999888888764322244566666554215689999998655553
No 183
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=68.97 E-value=21 Score=39.92 Aligned_cols=92 Identities=11% Similarity=0.054 Sum_probs=60.0
Q ss_pred ceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHh
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMA 293 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~ 293 (309)
.|++.- +|.+.++++.|.+..|.+....+=+.=+....+.|.. ++.+..|+++.....++.+.....+.+..|+...|
T Consensus 53 ~~vq~E-sE~~A~~av~GA~~aGara~T~TSs~GL~LM~e~l~~-~ag~~~P~Vi~va~R~~~~~~~~i~~dh~Dv~~~R 130 (1165)
T TIGR02176 53 KVVEMQ-SEAGAAGAVHGALQTGALTTTFTASQGLLLMIPNMYK-IAGELLPCVFHVSARAIAAHALSIFGDHQDVMAAR 130 (1165)
T ss_pred eEEEcc-chHHHHHHHHhHhhcCCCEEEecChhHHHHHHHHHHH-HHhccCCEEEEEecCCCCCCCCccCCCchHHHHhh
Confidence 344444 8999999999999999887665433323334555543 34558899998765444222234565666665555
Q ss_pred cCCCcEEEEeCCCCC
Q 041265 294 CLPNMVVMKDIKLVL 308 (309)
Q Consensus 294 ~iP~~~v~~Ps~~~e 308 (309)
. -|+.+++|+++.|
T Consensus 131 ~-~G~ivl~s~svQE 144 (1165)
T TIGR02176 131 Q-TGFAMLASSSVQE 144 (1165)
T ss_pred c-CCeEEEeCCCHHH
Confidence 4 5679999998766
No 184
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=67.02 E-value=1e+02 Score=31.75 Aligned_cols=103 Identities=24% Similarity=0.282 Sum_probs=61.9
Q ss_pred CeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhh
Q 041265 53 NHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFF 132 (309)
Q Consensus 53 ~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 132 (309)
=.|.++-+|-++.. ++.||+..|-.-+.|+++-.+.- + +.+ .+.+...+..+..+ =..
T Consensus 227 IvVLVVAadDGVmp-QT~EaIkhAk~A~VpiVvAinKi------------D----kp~---a~pekv~~eL~~~g--i~~ 284 (683)
T KOG1145|consen 227 IVVLVVAADDGVMP-QTLEAIKHAKSANVPIVVAINKI------------D----KPG---ANPEKVKRELLSQG--IVV 284 (683)
T ss_pred EEEEEEEccCCccH-hHHHHHHHHHhcCCCEEEEEecc------------C----CCC---CCHHHHHHHHHHcC--ccH
Confidence 35667777777754 78999999988877876542221 0 011 11122222111111 124
Q ss_pred hhcCCeEE----ecCCCCCHHHHHHHHH------HhhcCCCCCc---EEEEEEeeeccC
Q 041265 133 EDLGLYYI----GPVDGHNLEDLAYVLK------QVKAIPDPGA---VLIHVITEKEKA 178 (309)
Q Consensus 133 ~a~G~~~~----~~vDG~D~~~l~~al~------~a~~~~~~~P---~~I~~~T~kg~G 178 (309)
|.+|=++. ...-|.|++.|.+|+- ..|+.+ ++| .+||..|.||.|
T Consensus 285 E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~mdLkA~p-~g~~eg~VIES~vdkg~G 342 (683)
T KOG1145|consen 285 EDLGGDVQVIPISALTGENLDLLEEAILLLAEVMDLKADP-KGPAEGWVIESSVDKGRG 342 (683)
T ss_pred HHcCCceeEEEeecccCCChHHHHHHHHHHHHHhhcccCC-CCCceEEEEEeeecCCcc
Confidence 66666654 3456999999998874 234432 555 799999999988
No 185
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=65.65 E-value=32 Score=29.21 Aligned_cols=80 Identities=13% Similarity=0.040 Sum_probs=53.0
Q ss_pred cchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCC
Q 041265 219 GIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLP 296 (309)
Q Consensus 219 gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP 296 (309)
...|++.+.+|-|.|+. |...++. +..+=+..++.-|.+. -..+.|++++.........+-.++|..++..+++.+=
T Consensus 41 ~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~A-~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~vt 119 (162)
T cd07037 41 RVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVEA-YYSGVPLLVLTADRPPELRGTGANQTIDQVGLFGDYV 119 (162)
T ss_pred ccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHHH-HhcCCCEEEEECCCCHHhcCCCCCcccchhhhcccee
Confidence 45799999999999985 5444443 5666666666666665 4678999988765443222233477777777777665
Q ss_pred CcE
Q 041265 297 NMV 299 (309)
Q Consensus 297 ~~~ 299 (309)
.+.
T Consensus 120 k~~ 122 (162)
T cd07037 120 RWS 122 (162)
T ss_pred eEE
Confidence 543
No 186
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=63.65 E-value=70 Score=26.98 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=47.9
Q ss_pred CCeEEEEEeCCccccchHHHHHHHHh-hccCcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccch
Q 041265 52 NNHVISVIVEGATIARMSYEAINNAG-VLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRAC 130 (309)
Q Consensus 52 ~~~v~~~~GDG~l~eG~~~EAln~A~-~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (309)
...++|+.+=| -|-..-+|..|. ..+-|++++....+. ... + ...|.+ ...+. ..
T Consensus 58 ~~~~v~~~~sG---~gn~~~~l~~a~~~~~~Pvl~i~g~rg~----~~~---~-~~~q~~-----~g~~~--------~~ 113 (157)
T TIGR03845 58 KKPAILMQSSG---LGNSINALASLNKTYGIPLPILASWRGV----YKE---K-IPAQIP-----MGRAT--------PK 113 (157)
T ss_pred CCcEEEEeCCc---HHHHHHHHHHHHHcCCCCEEEEEeccCC----CCC---C-Cccccc-----hhhhh--------HH
Confidence 44467777777 235666666666 556799888644431 000 0 001111 01111 11
Q ss_pred hhhhcCCeEEecC-CCCCHHHHHHHHHHhhcCCCCCcEEEEEE
Q 041265 131 FFEDLGLYYIGPV-DGHNLEDLAYVLKQVKAIPDPGAVLIHVI 172 (309)
Q Consensus 131 ~f~a~G~~~~~~v-DG~D~~~l~~al~~a~~~~~~~P~~I~~~ 172 (309)
.|...++.+. .+ +..|+..+.+|++.+.+. ++|++|.+.
T Consensus 114 ~l~~~~i~~~-~i~~~e~~~~i~~A~~~a~~~--~gPv~il~~ 153 (157)
T TIGR03845 114 LLDTLGIPYT-IPREPEEAKLIEKAISDAYEN--SRPVAALLD 153 (157)
T ss_pred HHHHcCCCeE-EeCCHHHHHHHHHHHHHHHhC--CCCEEEEEe
Confidence 2344454444 33 233445556666677765 789998764
No 187
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=57.16 E-value=18 Score=28.84 Aligned_cols=43 Identities=33% Similarity=0.430 Sum_probs=22.4
Q ss_pred hhhhcCCeEE-ecCCCCCH-HHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 131 FFEDLGLYYI-GPVDGHNL-EDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 131 ~f~a~G~~~~-~~vDG~D~-~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
..++.|+.|+ -+|++.++ ++-.+++.++.+.. .+|+++||+|=
T Consensus 52 ~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~-~~Pvl~hC~sG 96 (110)
T PF04273_consen 52 AAEALGLQYVHIPVDGGAITEEDVEAFADALESL-PKPVLAHCRSG 96 (110)
T ss_dssp HHHHCT-EEEE----TTT--HHHHHHHHHHHHTT-TTSEEEE-SCS
T ss_pred HHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhC-CCCEEEECCCC
Confidence 4577888876 25665443 33444555444322 67999999883
No 188
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=53.84 E-value=1e+02 Score=26.15 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 148 LEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 148 ~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
.+.+.+|++.+.... .||+.|++
T Consensus 138 ~~~i~~A~~~A~~~~-~GPv~l~i 160 (162)
T cd07037 138 LRLANRAVLEALSAP-PGPVHLNL 160 (162)
T ss_pred HHHHHHHHHHHhCCC-CCCEEEec
Confidence 566778888887653 68999975
No 189
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=49.66 E-value=1.1e+02 Score=25.02 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=17.7
Q ss_pred chHHHHHHHHhhccCcEEEEEeCc
Q 041265 67 RMSYEAINNAGVLNKALKRLHSNP 90 (309)
Q Consensus 67 G~~~EAln~A~~~~~~Li~i~~nn 90 (309)
.-..+++-.|...+.|++++.-..
T Consensus 72 ~n~~~~l~~A~~~~~Pll~i~~~~ 95 (155)
T cd07035 72 TNAVTGLANAYLDSIPLLVITGQR 95 (155)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCC
Confidence 345678888888788999886554
No 190
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=48.38 E-value=25 Score=31.16 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=23.0
Q ss_pred hHHHHHhhhc---ccc---cCCCCCc--hhhhhhCCCceeec
Q 041265 185 QQTRLFCKIL---DNR---MGGGTGL--NLFQKHFPIRCFDV 218 (309)
Q Consensus 185 ~~~~~~~~~l---d~d---l~~~~~~--~~~~~~~p~r~~~~ 218 (309)
.|.+++.+.| .+| |+|.+.+ ..|-++|+.|++|.
T Consensus 66 ~~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~grIlNI 107 (200)
T COG0299 66 AFDRALVEALDEYGPDLVVLAGYMRILGPEFLSRFEGRILNI 107 (200)
T ss_pred HHHHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhhcceEec
Confidence 3555556655 356 4565554 67889999999983
No 191
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=47.87 E-value=94 Score=26.23 Aligned_cols=82 Identities=10% Similarity=-0.095 Sum_probs=52.2
Q ss_pred ccchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcC
Q 041265 218 VGIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACL 295 (309)
Q Consensus 218 ~gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~i 295 (309)
....|++..-+|-|.|+. |...++. +..+=+..++.-|.+. -..+.||+++.............+|..+...+++.+
T Consensus 43 ~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~~A-~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~ 121 (164)
T cd07039 43 QVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYDA-KRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDV 121 (164)
T ss_pred EeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHH-HhcCCCEEEEecCCcccccCCCCCcccCHHHHHHHh
Confidence 456799999999999985 5444433 4555455555666564 357899998875443321112246777777888777
Q ss_pred CCcEE
Q 041265 296 PNMVV 300 (309)
Q Consensus 296 P~~~v 300 (309)
-.+..
T Consensus 122 tk~~~ 126 (164)
T cd07039 122 AVYNE 126 (164)
T ss_pred hcEEE
Confidence 65543
No 192
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=44.68 E-value=2.3e+02 Score=29.72 Aligned_cols=81 Identities=14% Similarity=0.272 Sum_probs=46.2
Q ss_pred ccccchHHHHH-HHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcccc-hhhhHHhhhcCccchhhhh-cCCeE
Q 041265 63 ATIARMSYEAI-NNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHE-IDAFSREIEAGSRACFFED-LGLYY 139 (309)
Q Consensus 63 ~l~eG~~~EAl-n~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~a-~G~~~ 139 (309)
.... -++|.+ +.++..+.|++++.+..++. . -+++.+. ++++. .|+. -|+.+
T Consensus 394 ~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~--g------------~dG~THq~~~dia----------~lr~iPnl~V 448 (641)
T PRK12571 394 TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLV--G------------ADGATHAGAFDLA----------FLTNLPNMTV 448 (641)
T ss_pred HHHH-HHHHHHHHHHhhcCCCeEEEEECCCcC--C------------CCCccccccHHHH----------HHhcCCCCEE
Confidence 4444 888888 55787789999887665541 0 1112221 22221 1222 38888
Q ss_pred EecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEE
Q 041265 140 IGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVI 172 (309)
Q Consensus 140 ~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~ 172 (309)
+.+.| ..++..+++.+.+.+ ++|++|...
T Consensus 449 ~~Psd---~~e~~~~l~~a~~~~-~~P~~ir~~ 477 (641)
T PRK12571 449 MAPRD---EAELRHMLRTAAAHD-DGPIAVRFP 477 (641)
T ss_pred EeeCC---HHHHHHHHHHHHhCC-CCcEEEEEe
Confidence 87754 555555555555421 679998544
No 193
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=44.41 E-value=1.9e+02 Score=30.28 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=46.5
Q ss_pred ccccchHHHHHHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcc-cchhhhHHhhhcCccchhhhh-cCCeEE
Q 041265 63 ATIARMSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQM-HEIDAFSREIEAGSRACFFED-LGLYYI 140 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~a-~G~~~~ 140 (309)
.... -.+|++.+++..+.|++++....+++.. .+++. +.++++. .+++ -|+.++
T Consensus 430 ~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G-------------~dG~THq~iedia----------~lr~iPn~~v~ 485 (653)
T TIGR00232 430 MFVD-YARPAIRLAALMKLPVIYVYTHDSIGVG-------------EDGPTHQPIEQLA----------SLRAIPNLSVW 485 (653)
T ss_pred HHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCC-------------CCCcccCCHHHHH----------HHhcCCCCEEE
Confidence 4444 7789999998888999988754433210 11122 2234431 2333 388888
Q ss_pred ecCCCCCHHHHHHHHHHhh-cCCCCCcEEEEE
Q 041265 141 GPVDGHNLEDLAYVLKQVK-AIPDPGAVLIHV 171 (309)
Q Consensus 141 ~~vDG~D~~~l~~al~~a~-~~~~~~P~~I~~ 171 (309)
.+.|.++ +..+++.+. +. ++|++|-.
T Consensus 486 ~PaD~~E---~~~~~~~a~~~~--~gP~~irl 512 (653)
T TIGR00232 486 RPCDGNE---TAAAWKYALESQ--DGPTALIL 512 (653)
T ss_pred eeCCHHH---HHHHHHHHHhcC--CCcEEEEE
Confidence 7865555 444455444 33 67988843
No 194
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=44.16 E-value=2.1e+02 Score=29.82 Aligned_cols=89 Identities=9% Similarity=0.139 Sum_probs=49.4
Q ss_pred eEEEEEeCCccccchHHHHH-HHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCccc-chhhhHHhhhcCccchh
Q 041265 54 HVISVIVEGATIARMSYEAI-NNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMH-EIDAFSREIEAGSRACF 131 (309)
Q Consensus 54 ~v~~~~GDG~l~eG~~~EAl-n~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 131 (309)
+.||.+ -+..-. -++|-+ +.++..+.|++++.+..++. .. .++.+ .++++ ..
T Consensus 377 ~Pvv~~-~a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~~--g~------------dG~tH~~~~di----------a~ 430 (617)
T TIGR00204 377 KPFVAI-YSTFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGIV--GA------------DGETHQGAFDI----------SY 430 (617)
T ss_pred EEEEEe-cHHHHH-HHHHHHHHHHHhcCCCEEEEEECCCcC--CC------------CCcccccchHH----------HH
Confidence 444444 445554 788887 44677778999887765542 11 11111 12222 11
Q ss_pred hhh-cCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEE
Q 041265 132 FED-LGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVI 172 (309)
Q Consensus 132 f~a-~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~ 172 (309)
|+. -|+.++.+. |..++...++.+.+.. ++|++|...
T Consensus 431 lr~iPgl~V~~Ps---d~~e~~~~l~~a~~~~-~~Pv~ir~~ 468 (617)
T TIGR00204 431 LRCIPNMVIMAPS---DENELRQMLYTGYHYD-DGPIAVRYP 468 (617)
T ss_pred HhcCCCcEEEeeC---CHHHHHHHHHHHHhCC-CCCEEEEEc
Confidence 233 388888774 5555666666665431 479988543
No 195
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=43.96 E-value=2e+02 Score=24.37 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=23.8
Q ss_pred hhhc-CCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEE
Q 041265 132 FEDL-GLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVI 172 (309)
Q Consensus 132 f~a~-G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~ 172 (309)
+++. ||.++.+ -|..++...++.+-+.+.++|++|...
T Consensus 133 ~~~iPg~~v~~P---sd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 133 LRSIPGMKVVVP---SDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp HHTSTTEEEEE----SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred cccccccccccC---CCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 3443 8999877 466666666776655211789998543
No 196
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=41.90 E-value=1.4e+02 Score=24.62 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=26.8
Q ss_pred hhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCc
Q 041265 41 GMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNP 90 (309)
Q Consensus 41 G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn 90 (309)
++|.+..+.+.+ .+++.-|-|.++ ...+|-.|...+.|++++.-..
T Consensus 55 ~~A~g~~r~~~~-v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~ 100 (160)
T cd07034 55 EAAIGASAAGAR-AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQR 100 (160)
T ss_pred HHHHHHHhhCCc-EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeC
Confidence 444443333433 344444777664 5666777776668998886554
No 197
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=41.83 E-value=79 Score=31.93 Aligned_cols=84 Identities=13% Similarity=0.015 Sum_probs=56.2
Q ss_pred ceeeccchHHHHHHHHHHHhh-CCCeeEE-eecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAA-EGLKPFC-AIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTF 291 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~-~G~~pi~-~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~ 291 (309)
|++.+- .|++...+|-|.|+ .|...+| .++.+=+..++.-|.+. -..+.||+++..........-..||..++..+
T Consensus 38 ~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl~~A-~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~ 115 (539)
T TIGR02418 38 ELIVVR-HEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGLATA-NSEGDPVVAIGGQVKRADLLKLTHQSMDNVAL 115 (539)
T ss_pred CEEEeC-cHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHHHHH-hhcCCCEEEEeCCCcccccccCcccccchhhh
Confidence 455544 89999999999997 5655554 35666566666666664 35689999987644432111234888888888
Q ss_pred HhcCCCcE
Q 041265 292 MACLPNMV 299 (309)
Q Consensus 292 ~~~iP~~~ 299 (309)
++.+-.+.
T Consensus 116 ~~~~tk~~ 123 (539)
T TIGR02418 116 FRPITKYS 123 (539)
T ss_pred hhcceeee
Confidence 88765543
No 198
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=41.04 E-value=1.4e+02 Score=30.52 Aligned_cols=85 Identities=13% Similarity=-0.021 Sum_probs=54.2
Q ss_pred ceeeccchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTF 291 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~ 291 (309)
+++.+ ..|++.+.+|.|.|+. |...++. +..+=+..++.-|.+. -..+.||+++.........+-..+|..+...+
T Consensus 55 ~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~~gl~~A-~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l 132 (571)
T PRK07710 55 PHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNVVTGLADA-MIDSLPLVVFTGQVATSVIGSDAFQEADIMGI 132 (571)
T ss_pred cEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHH-hhcCCCEEEEeccCCccccCCCCccccchhhh
Confidence 67765 8999999999999985 5544543 4555455555666554 35689999887544332111122556667778
Q ss_pred HhcCCCcEE
Q 041265 292 MACLPNMVV 300 (309)
Q Consensus 292 ~~~iP~~~v 300 (309)
++.+-.+..
T Consensus 133 ~~~~tk~~~ 141 (571)
T PRK07710 133 TMPVTKHNY 141 (571)
T ss_pred hhcccceEE
Confidence 777655433
No 199
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=40.11 E-value=1.9e+02 Score=26.92 Aligned_cols=98 Identities=11% Similarity=0.122 Sum_probs=50.4
Q ss_pred hhhhhhCCCceee---ccch--HHHHHHHHHHHhhCCCeeEEe--ecHHHH--HhHHHHHHHhhhhCCCCeEEEEeCCCc
Q 041265 205 NLFQKHFPIRCFD---VGIA--EQHAVTFAAGLAAEGLKPFCA--IYSSFL--QRCFDQVAHDVDLQKLPVRFAIDRAGL 275 (309)
Q Consensus 205 ~~~~~~~p~r~~~---~gIa--E~~~vg~a~GlA~~G~~pi~~--~~~~F~--~ra~dqi~~~~a~~~~pv~~~~~~~g~ 275 (309)
....+++|+||+- .... |.+..-+---....|++.+-. ....|. .+-+..|...+...++||.|....+..
T Consensus 90 a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~ 169 (293)
T COG2159 90 AALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG 169 (293)
T ss_pred HHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 3445567888752 2222 433333333333345554442 122222 222455666666788999986544322
Q ss_pred -cCCCCCCCCChhHHHHHhcCCCcEEEE
Q 041265 276 -VGADGPTHCGAFDTTFMACLPNMVVMK 302 (309)
Q Consensus 276 -~g~~G~tH~~~~d~~~~~~iP~~~v~~ 302 (309)
.+......-...-..+++.+|+++|+.
T Consensus 170 ~~~~~~~~~~p~~~~~va~~fP~l~IVl 197 (293)
T COG2159 170 GAGLEKGHSDPLYLDDVARKFPELKIVL 197 (293)
T ss_pred CcccccCCCCchHHHHHHHHCCCCcEEE
Confidence 111111012234447999999999986
No 200
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=39.19 E-value=35 Score=38.13 Aligned_cols=89 Identities=20% Similarity=0.160 Sum_probs=57.0
Q ss_pred ceeeccchHHHHHHHHHHHhhCCCee---EEe----ecHHH--HHhHHHHHHHhhhhC----CCCeEEEEeC-CCccCCC
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAEGLKP---FCA----IYSSF--LQRCFDQVAHDVDLQ----KLPVRFAIDR-AGLVGAD 279 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~G~~p---i~~----~~~~F--~~ra~dqi~~~~a~~----~~pv~~~~~~-~g~~g~~ 279 (309)
-+++-++.|.-...++.|.++.|.+| +-. +|..- +.|+.|.+++. ++. +.-+++++.+ -|..
T Consensus 75 i~~e~~~NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~-n~~G~~~~GG~v~v~gDDpg~~--- 150 (1159)
T PRK13030 75 IRFLPGINEELAATAVLGTQQVEADPERTVDGVFAMWYGKGPGVDRAGDALKHG-NAYGSSPHGGVLVVAGDDHGCV--- 150 (1159)
T ss_pred eEEeecCCHHHHHHHHHHhccccccCCccccceEEEEecCcCCcccchhHHHHH-HhhcCCCCCcEEEEEecCCCCc---
Confidence 58999999999999999999777666 322 23222 47999999865 332 2344444332 2221
Q ss_pred CCCCCChhHHHHHhcCCCcEEEEeCCCCC
Q 041265 280 GPTHCGAFDTTFMACLPNMVVMKDIKLVL 308 (309)
Q Consensus 280 G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e 308 (309)
+-|...|--++...-+|-|+.|||+.|
T Consensus 151 --SSq~eqdSr~~~~~a~iPvl~Ps~~qE 177 (1159)
T PRK13030 151 --SSSMPHQSDFALIAWHMPVLNPANVQE 177 (1159)
T ss_pred --cCcCHHHHHHHHHHcCCceeCCCCHHH
Confidence 112223334566666777999999876
No 201
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=38.90 E-value=1.1e+02 Score=31.32 Aligned_cols=116 Identities=20% Similarity=0.216 Sum_probs=77.4
Q ss_pred hhHHHHHhhhc------ccccC-CCCC--chhhhhhCCCceeeccchHHHHHHHHHHHhhCCCeeEEe--ecHHHHHhHH
Q 041265 184 LQQTRLFCKIL------DNRMG-GGTG--LNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCA--IYSSFLQRCF 252 (309)
Q Consensus 184 ~~~~~~~~~~l------d~dl~-~~~~--~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~--~~~~F~~ra~ 252 (309)
..|..+|-++| +.-.+ ||.. |.=..+++++=-..+=|.|...-=+|.|+|+.-.+||+. +-.+-....+
T Consensus 8 t~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~ 87 (566)
T COG1165 8 TLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLY 87 (566)
T ss_pred HHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhcc
Confidence 46778888888 22222 3332 222345566666789999999999999999999999984 3333344555
Q ss_pred HHHHHhhhhCCCCeEEEEeCCCc--cCCCCCCCCChhHHHHHhcCCCcEEEE
Q 041265 253 DQVAHDVDLQKLPVRFAIDRAGL--VGADGPTHCGAFDTTFMACLPNMVVMK 302 (309)
Q Consensus 253 dqi~~~~a~~~~pv~~~~~~~g~--~g~~G~tH~~~~d~~~~~~iP~~~v~~ 302 (309)
..|... .+.+.|.+++....-. .+ -|+ -|.+++..+|.+.|...+=.
T Consensus 88 PAViEA-~~srvpLIVLTADRP~EL~~-~GA-nQaI~Q~~lfgs~v~~~~~L 136 (566)
T COG1165 88 PAVIEA-NLSRVPLIVLTADRPPELRG-CGA-NQAIDQTGLFGSYVRASIDL 136 (566)
T ss_pred HHHHhh-hhcCCceEEEeCCCCHHHhc-CCC-chhhhhhhhhcccchhhccC
Confidence 555554 6889999877654333 22 244 46888999999888775543
No 202
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=38.85 E-value=1.5e+02 Score=28.55 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=21.8
Q ss_pred cCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 135 LGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 135 ~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
-|+.++.+.| ..++..+++.+.+. ++|++|..
T Consensus 164 Pnl~V~~Pad---~~e~~~~l~~a~~~--~gPv~ir~ 195 (356)
T PLN02683 164 PGLKVLAPYS---SEDARGLLKAAIRD--PDPVVFLE 195 (356)
T ss_pred CCCEEEEeCC---HHHHHHHHHHHHhC--CCcEEEEE
Confidence 3899997754 55555556666554 77999963
No 203
>PRK13683 hypothetical protein; Provisional
Probab=38.70 E-value=50 Score=25.22 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=31.9
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccC
Q 041265 134 DLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKA 178 (309)
Q Consensus 134 a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G 178 (309)
.+-+.+. +=+-.|.+++++-++++.+. +.|.++|+.+.|-.+
T Consensus 12 P~P~SVQ-RKe~edA~alYq~I~~am~s--g~P~llELtCek~~~ 53 (87)
T PRK13683 12 PMPISVQ-RKEAEDAEALYQQIRQAMRS--GNPRLLELTCEKVED 53 (87)
T ss_pred CcceEEE-eccHHHHHHHHHHHHHHHhc--CCCcEEEEEecCcCC
Confidence 3445555 54667889999999888876 779999999988554
No 204
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=38.19 E-value=1.1e+02 Score=27.51 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=24.5
Q ss_pred chhhhhcCCeEEecCCCCCHHHHHHHHHHhhc
Q 041265 129 ACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKA 160 (309)
Q Consensus 129 ~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~ 160 (309)
...|+.+||++. ...--+.+++.++++++.+
T Consensus 36 ~~~f~~lgF~V~-~~~dlt~~em~~~l~~~~~ 66 (241)
T smart00115 36 TELFQSLGYEVH-VKNNLTAEEMLEELKEFAE 66 (241)
T ss_pred HHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 456899999998 6555778899999987654
No 205
>PRK12753 transketolase; Reviewed
Probab=37.56 E-value=2.5e+02 Score=29.54 Aligned_cols=82 Identities=9% Similarity=0.044 Sum_probs=47.3
Q ss_pred ccccchHHHHHHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcc-cchhhhHHhhhcCccchhhhh-cCCeEE
Q 041265 63 ATIARMSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQM-HEIDAFSREIEAGSRACFFED-LGLYYI 140 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~a-~G~~~~ 140 (309)
.... -.+|++.+++..+.|+++|....+++. .-+++. +.++++. .+++ -|+.++
T Consensus 436 ~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~-------------G~DG~THq~iedla----------~lR~iPn~~v~ 491 (663)
T PRK12753 436 MFVE-YARNAARMAALMKARQIMVYTHDSIGL-------------GEDGPTHQPVEQLA----------SLRLTPNFSTW 491 (663)
T ss_pred HHHH-HHHHHHHHHHhcCCCeEEEEeCCCccc-------------CCCCcccccHHHHH----------HHhcCCCCEEE
Confidence 4445 999999999877899998854443321 011222 2234442 1232 278888
Q ss_pred ecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEE
Q 041265 141 GPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVI 172 (309)
Q Consensus 141 ~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~ 172 (309)
.+.|.++.. .+++.+.+.. ++|+.|.+-
T Consensus 492 ~PaD~~E~~---~~~~~al~~~-~gP~~irl~ 519 (663)
T PRK12753 492 RPCDQVEAA---VAWKLAIERH-NGPTALILS 519 (663)
T ss_pred ccCCHHHHH---HHHHHHHhcC-CCCEEEEec
Confidence 787665544 4444444311 679887544
No 206
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=35.92 E-value=2.1e+02 Score=27.03 Aligned_cols=214 Identities=20% Similarity=0.251 Sum_probs=109.2
Q ss_pred CCCCCC-CCcCCchhhH-hhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhcc-CcEEEEE
Q 041265 11 ENVHDA-FGVGHSSTSI-SAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLN-KALKRLH 87 (309)
Q Consensus 11 e~~~d~-~~~G~~g~gl-s~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~-~~Li~i~ 87 (309)
+..||. +..|.+=|.+ +.|. |+|++ |+.. .+.+=+..-.+-.||=+.++-.+. +|+-+|.
T Consensus 45 ~~fPdR~~NvGIaEQ~mvg~AA----------GLA~~----Gk~P---fv~tfa~F~s~Ra~EQir~~iay~~lnVKiv~ 107 (312)
T COG3958 45 KEFPDRFFNVGIAEQDMVGTAA----------GLALA----GKKP---FVSTFAAFLSRRAWEQIRNSIAYNNLNVKIVA 107 (312)
T ss_pred HhCchhheecchHHHHHHHHHH----------HHHhc----CCCc---eeechHHHHHHHHHHHHHHHhhhccCCeEEEE
Confidence 344565 7777776654 3444 66654 4444 344557888899999999988886 8999988
Q ss_pred eCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhc-CCeEEecCCCCCHHHHHHHHHHhhcCCCCCc
Q 041265 88 SNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDL-GLYYIGPVDGHNLEDLAYVLKQVKAIPDPGA 166 (309)
Q Consensus 88 ~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~-G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P 166 (309)
.+.+++.- ..|..-+.++++. .|+.+ ++.++-++| --+..+.+.++.+. +||
T Consensus 108 t~~G~t~g------------~dG~sHq~~EDia----------imR~lpn~~V~~P~D---~v~~~~i~~~~~~~--~GP 160 (312)
T COG3958 108 THAGVTYG------------EDGSSHQALEDIA----------IMRGLPNMTVIAPAD---AVETRAILDQIADY--KGP 160 (312)
T ss_pred ecCCcccC------------CCCccchhHHHHH----------HHhcCCCceEEccCc---HHHHHHHHHHHHhc--CCC
Confidence 88765211 0121112234442 23332 455665554 44666667777766 889
Q ss_pred EEEEEEeeeccCCchhh-hhHHHHHhh--hc-c-cccC-CCCCc---------hhhhhh-CCCceeec----cchHHHHH
Q 041265 167 VLIHVITEKEKAMLPLK-LQQTRLFCK--IL-D-NRMG-GGTGL---------NLFQKH-FPIRCFDV----GIAEQHAV 226 (309)
Q Consensus 167 ~~I~~~T~kg~G~~~~e-~~~~~~~~~--~l-d-~dl~-~~~~~---------~~~~~~-~p~r~~~~----gIaE~~~v 226 (309)
+.+ ++-|++-.++.. ..|.=.+++ .| | .|+. -.+|+ +.|+++ ..-+++|+ ||.|+.+.
T Consensus 161 ~Y~--Rl~R~~~p~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~ 238 (312)
T COG3958 161 VYM--RLGRGKVPVVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAIL 238 (312)
T ss_pred EEE--EecCCCCCceecCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHH
Confidence 886 444433211111 001101222 12 2 2211 01111 122222 35688885 78898877
Q ss_pred HHHHHHhhCCCeeEEeecHHH--HHhHHHHHHHhhhhCCCCeEEEEeCCCc
Q 041265 227 TFAAGLAAEGLKPFCAIYSSF--LQRCFDQVAHDVDLQKLPVRFAIDRAGL 275 (309)
Q Consensus 227 g~a~GlA~~G~~pi~~~~~~F--~~ra~dqi~~~~a~~~~pv~~~~~~~g~ 275 (309)
-.| -..|+..-++--+.| +--+...+..+ .. ..|++.++-...+
T Consensus 239 ~~A---~~t~~IvT~EeHsi~GGlGsaVAEvlse-~~-p~~~~riGvp~~f 284 (312)
T COG3958 239 KAA---RETGRIVTAEEHSIIGGLGSAVAEVLSE-NG-PTPMRRIGVPDTF 284 (312)
T ss_pred HHH---hhcCcEEEEecceeecchhHHHHHHHHh-cC-CcceEEecCCchh
Confidence 543 235777666533333 22222232222 11 2566666554433
No 207
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=35.22 E-value=1.5e+02 Score=29.74 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=20.5
Q ss_pred CCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 136 GLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 136 G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
|+.++-+.|. .+....++.+.+. ++|+++.-
T Consensus 280 gl~V~~P~d~---~d~~~ll~~ai~~--~~Pv~ile 310 (464)
T PRK11892 280 GLKVVAPYSA---ADAKGLLKAAIRD--PNPVIFLE 310 (464)
T ss_pred CCEEEEeCCH---HHHHHHHHHHhhC--CCcEEEEe
Confidence 8999977554 4455555555554 67999743
No 208
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=32.82 E-value=2.7e+02 Score=28.76 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=51.8
Q ss_pred eeeccchHHHHHHHHHHHhhC----CC-eeEEee--cHHHHH-hHHHHHHHhhhhCCCCeEEEEeCCCcc--CCCCCCCC
Q 041265 215 CFDVGIAEQHAVTFAAGLAAE----GL-KPFCAI--YSSFLQ-RCFDQVAHDVDLQKLPVRFAIDRAGLV--GADGPTHC 284 (309)
Q Consensus 215 ~~~~gIaE~~~vg~a~GlA~~----G~-~pi~~~--~~~F~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~--g~~G~tH~ 284 (309)
++.+|+.= +-+++|+|+|++ |. ..++.. -..+.. .+++.+.+ ++..+.|++++....++. +.-+....
T Consensus 109 ~~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~-A~~~k~~li~Ii~dN~~si~~~~~~~~~ 186 (581)
T PRK12315 109 FFTVGHTS-TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNN-AAELKSNLIIIVNDNQMSIAENHGGLYK 186 (581)
T ss_pred CcCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHH-HHhhCCCEEEEEECCCCcCCCCCchhhh
Confidence 35666644 467788888863 32 233333 444553 67777755 467789999999877763 22221111
Q ss_pred Chh---------HHHHHhcCCCcEEEEeCCC
Q 041265 285 GAF---------DTTFMACLPNMVVMKDIKL 306 (309)
Q Consensus 285 ~~~---------d~~~~~~iP~~~v~~Ps~~ 306 (309)
.+. ...++..+ |+..+.|.|.
T Consensus 187 ~l~~~~~~~~~~~~~~~~a~-G~~~~~v~DG 216 (581)
T PRK12315 187 NLKELRDTNGQSENNLFKAM-GLDYRYVEDG 216 (581)
T ss_pred hhhhhhhcccccHHHHHHhc-CCeEEEeeCC
Confidence 111 12466666 7877777554
No 209
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=32.68 E-value=2.3e+02 Score=23.99 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=27.5
Q ss_pred HHHHHHhhCC-CeeEEee--cHHHHHhHHHHHHHhhhhCCCCeEEEEe-CCCc
Q 041265 227 TFAAGLAAEG-LKPFCAI--YSSFLQRCFDQVAHDVDLQKLPVRFAID-RAGL 275 (309)
Q Consensus 227 g~a~GlA~~G-~~pi~~~--~~~F~~ra~dqi~~~~a~~~~pv~~~~~-~~g~ 275 (309)
+.|.|+++.. -++++.. -..|++-.+..|... ...++|+++++- ..++
T Consensus 58 ~~AiGa~la~p~~~Vv~i~GDG~f~~~g~~eL~ta-~~~~l~i~vvV~nN~~~ 109 (178)
T cd02008 58 GVAIGMAKASEDKKVVAVIGDSTFFHSGILGLINA-VYNKANITVVILDNRTT 109 (178)
T ss_pred HHHhhHHhhCCCCCEEEEecChHHhhccHHHHHHH-HHcCCCEEEEEECCcce
Confidence 3666666643 3455543 566765544555553 567888887764 4444
No 210
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=32.33 E-value=1.5e+02 Score=30.30 Aligned_cols=83 Identities=11% Similarity=0.026 Sum_probs=53.8
Q ss_pred ceeeccchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTF 291 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~ 291 (309)
+++.+ ..|++.+.+|.|.|+. |.-.++. +-.+-...++.-|.+. -..+.||+++..........-..+|..+...+
T Consensus 51 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl~~A-~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~l 128 (578)
T PRK06112 51 RQIAY-RTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPLAEA-LKASVPIVALVQDVNRDQTDRNAFQELDHIAL 128 (578)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHHHHH-hhcCCCEEEEecCCccccCCCCCccccChhhh
Confidence 44443 4899999999999985 5444443 4556566666666664 36789999887544432112233667777778
Q ss_pred HhcCCCc
Q 041265 292 MACLPNM 298 (309)
Q Consensus 292 ~~~iP~~ 298 (309)
++.+-.+
T Consensus 129 ~~~vtk~ 135 (578)
T PRK06112 129 FQSCTKW 135 (578)
T ss_pred hccccce
Confidence 8777655
No 211
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=32.00 E-value=1.6e+02 Score=29.86 Aligned_cols=79 Identities=10% Similarity=-0.024 Sum_probs=51.8
Q ss_pred cchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCcc-CCCCCCCCChhHHHHHhcC
Q 041265 219 GIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLV-GADGPTHCGAFDTTFMACL 295 (309)
Q Consensus 219 gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~-g~~G~tH~~~~d~~~~~~i 295 (309)
-..|++.+.+|-|.|+. |+..++. +..+=+..++.-|.+. -..+.||+++....... -..+ .+|..+...+++.+
T Consensus 52 ~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi~~A-~~~~~Pvl~i~g~~~~~~~~~~-~~q~~d~~~l~~~~ 129 (557)
T PRK08199 52 CRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGVHTA-FQDSTPMILFVGQVARDFRERE-AFQEIDYRRMFGPM 129 (557)
T ss_pred eccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHH-hhcCCCEEEEecCCccccCCCC-cccccCHHHhhhhh
Confidence 45799999999999985 5544443 5666666666666664 35789999887544331 1122 35667777778766
Q ss_pred CCcE
Q 041265 296 PNMV 299 (309)
Q Consensus 296 P~~~ 299 (309)
=.+.
T Consensus 130 tk~~ 133 (557)
T PRK08199 130 AKWV 133 (557)
T ss_pred hcee
Confidence 5443
No 212
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=31.97 E-value=85 Score=24.69 Aligned_cols=36 Identities=6% Similarity=-0.034 Sum_probs=29.0
Q ss_pred CCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEE
Q 041265 52 NNHVISVIVEGATIARMSYEAINNAGVLNKALKRLH 87 (309)
Q Consensus 52 ~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~ 87 (309)
....|++.++|.++.|.+.+-+..-+....|.|++.
T Consensus 79 ~~p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~ 114 (126)
T PF10996_consen 79 SGPKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFT 114 (126)
T ss_dssp CSSEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEES
T ss_pred CCCeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEe
Confidence 466899999999999999999986666566776663
No 213
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=31.94 E-value=1.5e+02 Score=30.05 Aligned_cols=84 Identities=12% Similarity=-0.047 Sum_probs=52.8
Q ss_pred ceeeccchHHHHHHHHHHHhh-CCCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAA-EGLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTF 291 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~-~G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~ 291 (309)
|++. ...|++.+.+|.|.|+ .|...++. ++.+=+..++.-|.+. -..+.||+++.............+|..+...+
T Consensus 41 ~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i~~A-~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~ 118 (558)
T TIGR00118 41 EHIL-VRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGIATA-YMDSIPMVVFTGQVPTSLIGSDAFQEADILGI 118 (558)
T ss_pred eEEE-eCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHH-HhcCCCEEEEecCCCccccCCCCCcccChhhh
Confidence 3443 4589999999999997 56544443 5666556666666664 36789999887544332111223666666677
Q ss_pred HhcCCCcE
Q 041265 292 MACLPNMV 299 (309)
Q Consensus 292 ~~~iP~~~ 299 (309)
++.+=.+.
T Consensus 119 ~~~~tk~~ 126 (558)
T TIGR00118 119 TMPITKHS 126 (558)
T ss_pred hcCcccee
Confidence 77655443
No 214
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=31.16 E-value=1.5e+02 Score=26.66 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=31.6
Q ss_pred chhhhhcCCeEEecCCCCCHHHHHHHHHHhhc-CCCCCcEEEEEEeeeccCCc
Q 041265 129 ACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKA-IPDPGAVLIHVITEKEKAML 180 (309)
Q Consensus 129 ~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~-~~~~~P~~I~~~T~kg~G~~ 180 (309)
...|+.+||++. ...--+..++.++++++.+ ...+.-.++ ..+-++|..
T Consensus 38 ~~~f~~lgF~V~-~~~nlt~~~~~~~l~~f~~~~~~~~d~~v--~~~~sHG~~ 87 (243)
T cd00032 38 TKLFESLGYEVE-VKNNLTAEEILEELKEFASPDHSDSDSFV--CVILSHGEE 87 (243)
T ss_pred HHHHHHCCCEEE-EeCCCCHHHHHHHHHHHHhccCCCCCeeE--EEECCCCCC
Confidence 457899999998 5555778889999987763 211222333 235667744
No 215
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=31.12 E-value=3.2e+02 Score=22.93 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=24.1
Q ss_pred HhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCc
Q 041265 47 DLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNP 90 (309)
Q Consensus 47 k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn 90 (309)
|..++...+++..|=|.++ ..=++..|..-+.||++|.-+.
T Consensus 59 r~tg~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~ 99 (164)
T cd07039 59 KLTGKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQV 99 (164)
T ss_pred HHhCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCC
Confidence 3345555555555777664 3344555555568999886553
No 216
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.56 E-value=1.6e+02 Score=30.14 Aligned_cols=79 Identities=14% Similarity=0.005 Sum_probs=52.0
Q ss_pred cchHHHHHHHHHHHhh-CCCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCC
Q 041265 219 GIAEQHAVTFAAGLAA-EGLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLP 296 (309)
Q Consensus 219 gIaE~~~vg~a~GlA~-~G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP 296 (309)
...|++.+.+|.|.|+ .|...+|. +..+=+..++.-|.+. -..+.||+++..........-..+|..+...+++.+=
T Consensus 48 ~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi~~A-~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~~t 126 (574)
T PRK07979 48 VRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIATA-YMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVV 126 (574)
T ss_pred eCcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHHHHH-hhcCCCEEEEECCCChhccCCCCCceecHHHHhhccc
Confidence 4579999999999997 57776664 5666566666666554 3568999998765444211112356666667777655
Q ss_pred Cc
Q 041265 297 NM 298 (309)
Q Consensus 297 ~~ 298 (309)
.+
T Consensus 127 k~ 128 (574)
T PRK07979 127 KH 128 (574)
T ss_pred ce
Confidence 44
No 217
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=29.64 E-value=4.9e+02 Score=26.69 Aligned_cols=89 Identities=13% Similarity=0.191 Sum_probs=48.5
Q ss_pred CeEEEEEeCCccccchHHHHHHH-HhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCccc-chhhhHHhhhcCccch
Q 041265 53 NHVISVIVEGATIARMSYEAINN-AGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMH-EIDAFSREIEAGSRAC 130 (309)
Q Consensus 53 ~~v~~~~GDG~l~eG~~~EAln~-A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 130 (309)
.+.|+.+ =..... -++|.+.+ ++..+.|++++....++.. . .++.+ .++++.
T Consensus 345 ~~p~~~~-f~~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~g--~------------dG~tH~~~edia---------- 398 (580)
T PRK05444 345 LKPVVAI-YSTFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLVG--A------------DGPTHQGAFDLS---------- 398 (580)
T ss_pred CeeEEEe-eHHHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcCC--C------------CCccccccHHHH----------
Confidence 3444444 445554 88886555 6777789998876544411 1 11111 122221
Q ss_pred hhhh-cCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 131 FFED-LGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 131 ~f~a-~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
.|++ -|+.++.+. |..++..+++.+-+.. ++|++|..
T Consensus 399 ~lr~iP~l~V~~Ps---d~~e~~~~l~~a~~~~-~~P~~ir~ 436 (580)
T PRK05444 399 YLRCIPNMVIMAPS---DENELRQMLYTALAYD-DGPIAIRY 436 (580)
T ss_pred HHhcCCCCEEEeeC---CHHHHHHHHHHHHhCC-CCcEEEEe
Confidence 1222 488988775 5555555565555321 67988744
No 218
>PRK11269 glyoxylate carboligase; Provisional
Probab=29.28 E-value=1.9e+02 Score=29.60 Aligned_cols=84 Identities=10% Similarity=0.017 Sum_probs=53.4
Q ss_pred ceeeccchHHHHHHHHHHHhhC--CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAE--GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTT 290 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~--G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~ 290 (309)
|++.+ ..|++.+.+|-|.|+. |...+|. +..+=+..++.-+.+. -..+.||+++..........-..+|..+...
T Consensus 44 ~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl~~A-~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~ 121 (591)
T PRK11269 44 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSA-SADSIPILCITGQAPRARLHKEDFQAVDIES 121 (591)
T ss_pred cEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHHHHH-hhcCCCEEEEecCCCccccCCCcccccChhh
Confidence 45554 5899999999999984 5544443 5666555566566554 3578999988754443211112366777777
Q ss_pred HHhcCCCcE
Q 041265 291 FMACLPNMV 299 (309)
Q Consensus 291 ~~~~iP~~~ 299 (309)
+++.+=.+.
T Consensus 122 l~~~itk~s 130 (591)
T PRK11269 122 IAKPVTKWA 130 (591)
T ss_pred HhhcceeEE
Confidence 887655443
No 219
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=29.20 E-value=1.7e+02 Score=29.82 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=51.2
Q ss_pred cchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCcc--CCCCCCCCChhHHHHHhc
Q 041265 219 GIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLV--GADGPTHCGAFDTTFMAC 294 (309)
Q Consensus 219 gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~--g~~G~tH~~~~d~~~~~~ 294 (309)
-..|++.+.+|-|.|+. |...+|. +..+=+..++.-|.+. -..+.||+++....... +. + .+|..+...+++.
T Consensus 49 ~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi~~A-~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d~~~i~~~ 125 (572)
T PRK06456 49 MRHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGLITA-YWDSSPVIAITGQVPRSVMGK-M-AFQEADAMGVFEN 125 (572)
T ss_pred eCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHHHH-HhhCCCEEEEecCCCccccCC-C-Cccccchhhhhhc
Confidence 45799999999999985 6554544 5666666666666664 35689999887544432 22 2 2455555667766
Q ss_pred CCCcEE
Q 041265 295 LPNMVV 300 (309)
Q Consensus 295 iP~~~v 300 (309)
+-.+..
T Consensus 126 ~tk~~~ 131 (572)
T PRK06456 126 VTKYVI 131 (572)
T ss_pred cceeEE
Confidence 554433
No 220
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=29.15 E-value=2e+02 Score=30.17 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=75.5
Q ss_pred EEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCccc-chhhhHHhhhcCccchhhh
Q 041265 55 VISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMH-EIDAFSREIEAGSRACFFE 133 (309)
Q Consensus 55 v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~ 133 (309)
+|.++-|- ..-|+++|+..+.|+++|.....++ -.-+++.+ .++.+.. +-.
T Consensus 433 TFlvFsdY------~r~AiRlaALm~l~~~~V~THDSIg-------------vGEDGPTHqPiEqLa~---------LRa 484 (663)
T COG0021 433 TFLVFSDY------ARPAVRLAALMGLPVIYVFTHDSIG-------------VGEDGPTHQPVEQLAS---------LRA 484 (663)
T ss_pred eehhhHhh------hhHHHHHHHhcCCCeEEEEecCcee-------------cCCCCCCCCcHHHHHH---------hhc
Confidence 55555554 4568999999999999885543221 11123332 2344421 112
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhhhhHHHHHhhhcccccCCCCCchhhhhhCCC
Q 041265 134 DLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLKLQQTRLFCKILDNRMGGGTGLNLFQKHFPI 213 (309)
Q Consensus 134 a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e~~~~~~~~~~ld~dl~~~~~~~~~~~~~p~ 213 (309)
--|+.+++++|++...+ +.+.+.+.+ ++|++|.+.-..-.-.+. +. .+.-..|.+-+..=..+-|+
T Consensus 485 iPN~~V~RPaD~~Et~~---aw~~Al~~~-~gPt~LiltRQnlp~l~~---t~-------~~~~~kGaYvl~~~~~~~pd 550 (663)
T COG0021 485 IPNLSVIRPADANETAA---AWKYALERK-DGPTALILTRQNLPVLER---TD-------LEGVAKGAYVLKDSGGEDPD 550 (663)
T ss_pred cCCceeEecCChHHHHH---HHHHHHhcC-CCCeEEEEecCCCCccCC---Cc-------cccccCccEEEeecCCCCCC
Confidence 25889999988775444 444444322 789998654432221000 00 11112232223211112466
Q ss_pred c-eeeccchHHHHHHHHHHHhhCCCeeEE-eecH
Q 041265 214 R-CFDVGIAEQHAVTFAAGLAAEGLKPFC-AIYS 245 (309)
Q Consensus 214 r-~~~~gIaE~~~vg~a~GlA~~G~~pi~-~~~~ 245 (309)
- ++-||.-=+-.+..+-=|...|.+.=+ ++.+
T Consensus 551 ~iliAtGSEV~lAv~Aa~~L~~~~~~vrVVS~P~ 584 (663)
T COG0021 551 VILIATGSEVELAVEAAKELEAEGIKVRVVSMPS 584 (663)
T ss_pred EEEEecccHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 4 456776555555666666656755433 4433
No 221
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=28.94 E-value=1.9e+02 Score=29.69 Aligned_cols=79 Identities=16% Similarity=0.079 Sum_probs=49.8
Q ss_pred cchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCC
Q 041265 219 GIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLP 296 (309)
Q Consensus 219 gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP 296 (309)
...|++.+.+|.|.|+. |+..+|. +..+=+..++.-|.+. -..+.||+++..........-..+|..+...+++.+=
T Consensus 49 ~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~A-~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~l~~~~t 127 (588)
T PRK07525 49 VAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAVATA-YWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMT 127 (588)
T ss_pred ecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHH-hhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhhe
Confidence 45799999999999985 7666654 4555444555555554 3568999999754333111112366667777777764
Q ss_pred Cc
Q 041265 297 NM 298 (309)
Q Consensus 297 ~~ 298 (309)
.+
T Consensus 128 k~ 129 (588)
T PRK07525 128 KY 129 (588)
T ss_pred eE
Confidence 43
No 222
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=28.16 E-value=2.5e+02 Score=23.72 Aligned_cols=64 Identities=16% Similarity=0.029 Sum_probs=35.4
Q ss_pred hCCCceeeccc-hHHH-HHHHHHHHhhCC-CeeEEee--cHHHHHhHHHHHHHhhhhCCCCeEEEEe-CCCc
Q 041265 210 HFPIRCFDVGI-AEQH-AVTFAAGLAAEG-LKPFCAI--YSSFLQRCFDQVAHDVDLQKLPVRFAID-RAGL 275 (309)
Q Consensus 210 ~~p~r~~~~gI-aE~~-~vg~a~GlA~~G-~~pi~~~--~~~F~~ra~dqi~~~~a~~~~pv~~~~~-~~g~ 275 (309)
..|.+++..+. .-.+ .++.|.|+++.. .++++.+ -.+|++... .+.+ +...++|+++++- .+++
T Consensus 39 ~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~~~-el~t-~~~~~lp~~~iv~NN~~~ 108 (178)
T cd02014 39 NGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAMLMG-DLIT-AVKYNLPVIVVVFNNSDL 108 (178)
T ss_pred CCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHH-HHHH-HHHhCCCcEEEEEECCch
Confidence 34667776543 2222 445666766643 3445543 667876643 3555 3567888877764 4444
No 223
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=28.10 E-value=1.4e+02 Score=26.16 Aligned_cols=27 Identities=0% Similarity=-0.084 Sum_probs=19.7
Q ss_pred CeEEEEEeCC-ccccchHHHHHHHHhhc
Q 041265 53 NHVISVIVEG-ATIARMSYEAINNAGVL 79 (309)
Q Consensus 53 ~~v~~~~GDG-~l~eG~~~EAln~A~~~ 79 (309)
.++++|+|++ +-.+|..+++..-+...
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~ 135 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKN 135 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHc
Confidence 3667777766 88889988877766544
No 224
>PRK08322 acetolactate synthase; Reviewed
Probab=27.82 E-value=1.9e+02 Score=29.15 Aligned_cols=80 Identities=18% Similarity=0.076 Sum_probs=51.1
Q ss_pred ccchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcC
Q 041265 218 VGIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACL 295 (309)
Q Consensus 218 ~gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~i 295 (309)
....|++.+.+|-|.|+. |...++. +..+=+..++.-|.+. -..+.||+++..........-..||..+...+++.+
T Consensus 43 ~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i~~A-~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~ 121 (547)
T PRK08322 43 LTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVAYA-QLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPL 121 (547)
T ss_pred EeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHHHHH-hhcCCCEEEEeccccccccCCCccccccHHHHhhhh
Confidence 346899999999999985 5544443 4555455566666654 467899998875433311111236666777888776
Q ss_pred CCc
Q 041265 296 PNM 298 (309)
Q Consensus 296 P~~ 298 (309)
-.+
T Consensus 122 tk~ 124 (547)
T PRK08322 122 TKW 124 (547)
T ss_pred eeE
Confidence 544
No 225
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=27.81 E-value=2.5e+02 Score=28.23 Aligned_cols=85 Identities=13% Similarity=0.127 Sum_probs=51.6
Q ss_pred ceeeccchHHHHHHHHHHHhh-CCCeeEEee-cHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCcc-CCCCCCCCChhHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAA-EGLKPFCAI-YSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLV-GADGPTHCGAFDTT 290 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~-~G~~pi~~~-~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~-g~~G~tH~~~~d~~ 290 (309)
|++ .-..|++.+.+|.|.|+ .|+-.++.. -.+=+..++.-|.+. -..+.||+++....... ...+..+|..+...
T Consensus 50 ~~i-~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gia~A-~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~ 127 (530)
T PRK07092 50 RYV-LGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNLFTA-FKNHTPLVITAGQQARSILPFEPFLAAVQAAE 127 (530)
T ss_pred CEE-EEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHHHHH-hhcCCCEEEEecCCcccccCccchhcccCHHH
Confidence 444 55689999999999998 465444433 222244666666554 35689999887544432 11233334445567
Q ss_pred HHhcCCCcEE
Q 041265 291 FMACLPNMVV 300 (309)
Q Consensus 291 ~~~~iP~~~v 300 (309)
+++.+-.+..
T Consensus 128 l~~~~tk~~~ 137 (530)
T PRK07092 128 LPKPYVKWSI 137 (530)
T ss_pred hhccccccee
Confidence 7777665543
No 226
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=27.72 E-value=1.8e+02 Score=29.42 Aligned_cols=81 Identities=11% Similarity=-0.068 Sum_probs=50.5
Q ss_pred ccchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcC
Q 041265 218 VGIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACL 295 (309)
Q Consensus 218 ~gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~i 295 (309)
....|++...+|.|.|+. |+..+|. +..+=+..++.-|.+. -..+.||+++..........-.++|..+...+++.+
T Consensus 44 ~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l~~A-~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~v 122 (549)
T PRK06457 44 QVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGLYDA-KMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDV 122 (549)
T ss_pred EeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHHHHH-HhcCCCEEEEecCCCccccCCCcccccchhhhhccc
Confidence 356799999999999985 5444443 4555445555555554 356899998875433311112235677777788776
Q ss_pred CCcE
Q 041265 296 PNMV 299 (309)
Q Consensus 296 P~~~ 299 (309)
-.+.
T Consensus 123 tk~~ 126 (549)
T PRK06457 123 AVFN 126 (549)
T ss_pred eeEE
Confidence 6543
No 227
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=27.68 E-value=1.1e+02 Score=25.03 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=21.5
Q ss_pred hhcCCeEEe-cCCCC--CHHHHHHHHHH-hhcCCCCCcEEEEEEeee
Q 041265 133 EDLGLYYIG-PVDGH--NLEDLAYVLKQ-VKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 133 ~a~G~~~~~-~vDG~--D~~~l~~al~~-a~~~~~~~P~~I~~~T~k 175 (309)
+..|+.|+. ++... +.+++ +++.+ +.+. ++|+++||+|=|
T Consensus 54 ~~~gl~y~~iPv~~~~~~~~~v-~~f~~~~~~~--~~pvL~HC~sG~ 97 (135)
T TIGR01244 54 EAAGVTYHHQPVTAGDITPDDV-ETFRAAIGAA--EGPVLAYCRSGT 97 (135)
T ss_pred HHCCCeEEEeecCCCCCCHHHH-HHHHHHHHhC--CCCEEEEcCCCh
Confidence 446777761 22222 23333 33333 3333 789999997754
No 228
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=27.50 E-value=3.8e+02 Score=28.47 Aligned_cols=95 Identities=12% Similarity=0.197 Sum_probs=51.4
Q ss_pred hhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHH-HhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcccc-hhh
Q 041265 41 GMAVGRDLLGKNNHVISVIVEGATIARMSYEAINN-AGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHE-IDA 118 (309)
Q Consensus 41 G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~-A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 118 (309)
|+|. .|. ..++++.. ..-. -+||-+.+ ++..+.|+.++.+.-++.. .+++.+. +.+
T Consensus 441 GLA~----~G~-kPvv~iys--tFlq-RAyDQI~~Dval~~lpV~~vid~aGlvg--------------~DG~TH~g~~D 498 (701)
T PLN02225 441 GLSS----GGL-KPFCIIPS--AFLQ-RAYDQVVHDVDRQRKAVRFVITSAGLVG--------------SDGPVQCGAFD 498 (701)
T ss_pred HHHH----CCC-EEEEEeeh--hHHH-HHHHHHHHHHHhhcCCceEEEECCccCC--------------CCCccccccHH
Confidence 5554 454 33445553 4544 77777665 5666789988877765421 1112111 222
Q ss_pred hHHhhhcCccchhhhh-cCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 119 FSREIEAGSRACFFED-LGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 119 ~~~~~~~~~~~~~f~a-~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
+ +.|+. -|+.++.+. |..++..+++.+.... ++|++|-.
T Consensus 499 i----------a~lr~IPnm~V~aPs---D~~El~~mL~~A~~~~-~gPv~IR~ 538 (701)
T PLN02225 499 I----------AFMSSLPNMIAMAPA---DEDELVNMVATAAYVT-DRPVCFRF 538 (701)
T ss_pred H----------HHHhcCCCCEEEeeC---CHHHHHHHHHHHHhcC-CCCEEEEe
Confidence 2 12233 388888774 5566666666544221 67999743
No 229
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.03 E-value=2.1e+02 Score=29.20 Aligned_cols=81 Identities=11% Similarity=-0.010 Sum_probs=51.9
Q ss_pred cchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCC
Q 041265 219 GIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLP 296 (309)
Q Consensus 219 gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP 296 (309)
...|++.+.+|-|.|+. |...++. +..+=+..++.-|.+. -..+.||+++..........-..+|..+...+++.+-
T Consensus 48 ~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl~~A-~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~it 126 (574)
T PRK06466 48 VRHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGIATA-YMDSIPMVVLSGQVPSTLIGEDAFQETDMVGISRPIV 126 (574)
T ss_pred eCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHH-HhcCCCEEEEecCCCccccCCCcccccchhhhhhccc
Confidence 46899999999999984 5544543 5655455566666554 3568999998754444211112367777667777765
Q ss_pred CcEE
Q 041265 297 NMVV 300 (309)
Q Consensus 297 ~~~v 300 (309)
.+..
T Consensus 127 k~s~ 130 (574)
T PRK06466 127 KHSF 130 (574)
T ss_pred eeEE
Confidence 5433
No 230
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=26.93 E-value=2.3e+02 Score=28.59 Aligned_cols=87 Identities=14% Similarity=-0.006 Sum_probs=54.3
Q ss_pred ceeeccchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTF 291 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~ 291 (309)
|++. ...|++.+.+|-|.|+. |...++. +..+=+..++.-|.+. -..+.||+++..........-..+|..+...+
T Consensus 40 ~~v~-~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~~A-~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~ 117 (548)
T PRK08978 40 EHLL-CRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLADA-LLDSVPVVAITGQVSSPLIGTDAFQEIDVLGL 117 (548)
T ss_pred eEEE-eccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHH-hhcCCCEEEEecCCCccccCCCCCcccchhcc
Confidence 3443 37899999999999984 6544443 5665555566666664 35689999987654442111123666666677
Q ss_pred HhcCCCcEEEE
Q 041265 292 MACLPNMVVMK 302 (309)
Q Consensus 292 ~~~iP~~~v~~ 302 (309)
++.+-.+....
T Consensus 118 ~~~~tk~~~~v 128 (548)
T PRK08978 118 SLACTKHSFLV 128 (548)
T ss_pred ccCceeeEEEE
Confidence 77665544433
No 231
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=26.78 E-value=6.1e+02 Score=26.86 Aligned_cols=85 Identities=8% Similarity=0.151 Sum_probs=46.3
Q ss_pred EEEEEeCCccccchHHHHH-HHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcccc-hhhhHHhhhcCccchhh
Q 041265 55 VISVIVEGATIARMSYEAI-NNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHE-IDAFSREIEAGSRACFF 132 (309)
Q Consensus 55 v~~~~GDG~l~eG~~~EAl-n~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f 132 (309)
+++++. ..-. -.+|-+ +.++..+.|++++.+..++.. .+++.+. ++++. ++
T Consensus 425 vv~~fs--~Fl~-RA~DQI~~dval~~lpVv~v~~~aG~vg--------------~dG~TH~~~~Dia----------~l 477 (677)
T PLN02582 425 FCAIYS--SFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVG--------------ADGPTHCGAFDVT----------YM 477 (677)
T ss_pred EEEecH--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCccc--------------CCCCcccccHHHH----------HH
Confidence 444433 3433 777754 666777799998877655421 1112221 23321 12
Q ss_pred hh-cCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEE
Q 041265 133 ED-LGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIH 170 (309)
Q Consensus 133 ~a-~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~ 170 (309)
+. -|+.++.+. |..++..+++.+.+.+ ++|++|.
T Consensus 478 r~iPnl~V~~Ps---d~~E~~~~l~~al~~~-~gPv~IR 512 (677)
T PLN02582 478 ACLPNMVVMAPS---DEAELFHMVATAAAID-DRPSCFR 512 (677)
T ss_pred hcCCCCEEEeeC---CHHHHHHHHHHHHhCC-CCCEEEE
Confidence 22 388888775 4555555566555331 5799884
No 232
>PRK05899 transketolase; Reviewed
Probab=26.63 E-value=6e+02 Score=26.34 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=45.4
Q ss_pred chHHHHHHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcc-cchhhhHHhhhcCccchhhhh-cCCeEEecCC
Q 041265 67 RMSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQM-HEIDAFSREIEAGSRACFFED-LGLYYIGPVD 144 (309)
Q Consensus 67 G~~~EAln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~a-~G~~~~~~vD 144 (309)
.-.+|++++++..+.|++++....++... ..+.. +.++++. .|++ -|+.++.+.|
T Consensus 404 ~r~~~qir~~~~~~~pv~~v~~~~G~~~g-------------~~G~tHq~~edia----------~~r~iP~~~V~~P~d 460 (624)
T PRK05899 404 DYARNAIRLAALMKLPVIYVFTHDSIGVG-------------EDGPTHQPVEQLA----------SLRAIPNLTVIRPAD 460 (624)
T ss_pred HHHHHHHHHHHhcCCCEEEEEECCCcCcC-------------CCCCCcccHHHHH----------HHHhCCCcEEEeCCC
Confidence 68899999987767899888766554211 01111 2233321 1222 3888887755
Q ss_pred CCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 145 GHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 145 G~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
.+ ++..+++.+.+.. ++|++|..
T Consensus 461 ~~---e~~~~l~~a~~~~-~~P~~ir~ 483 (624)
T PRK05899 461 AN---ETAAAWKYALERK-DGPSALVL 483 (624)
T ss_pred HH---HHHHHHHHHHHcC-CCCEEEEE
Confidence 44 4555555554321 57998866
No 233
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=26.51 E-value=4.3e+02 Score=25.44 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=20.4
Q ss_pred CCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEE
Q 041265 136 GLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIH 170 (309)
Q Consensus 136 G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~ 170 (309)
|+.++.+.|.. ++..+++.+.+. ++|++|.
T Consensus 173 n~~V~~Psd~~---e~~~~l~~a~~~--~~P~~i~ 202 (355)
T PTZ00182 173 GLKVVAPSDPE---DAKGLLKAAIRD--PNPVVFF 202 (355)
T ss_pred CCEEEeeCCHH---HHHHHHHHHHhC--CCcEEEE
Confidence 89998775554 555555555554 7799884
No 234
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=26.50 E-value=3.3e+02 Score=27.77 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCcEEEE
Q 041265 143 VDGHNLEDLAYVLKQVKAIPDPGAVLIH 170 (309)
Q Consensus 143 vDG~D~~~l~~al~~a~~~~~~~P~~I~ 170 (309)
+-+-+..+|.++.+..|+. ++|.+|.
T Consensus 199 i~~p~~s~i~~av~llk~A--KrPLlvv 224 (571)
T KOG1185|consen 199 IPGPPPSQIQKAVQLLKSA--KRPLLVV 224 (571)
T ss_pred CCCCCHHHHHHHHHHHHhc--CCcEEEE
Confidence 5577889999999988877 8898774
No 235
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=26.04 E-value=1.2e+02 Score=30.72 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=54.3
Q ss_pred cchHHHHHHHHHHHhhC-CCeeEE-eecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCcc-CCCCCCCCChhHHHHHhcC
Q 041265 219 GIAEQHAVTFAAGLAAE-GLKPFC-AIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLV-GADGPTHCGAFDTTFMACL 295 (309)
Q Consensus 219 gIaE~~~vg~a~GlA~~-G~~pi~-~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~-g~~G~tH~~~~d~~~~~~i 295 (309)
...|++.+-+|-|.|+. |...+| .++.+=+..++..|.+. -..+.||+++....... -..|. +|..+...+++.+
T Consensus 53 ~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l~~i~~A-~~~~~Pvl~IsG~~~~~~~~~~~-~q~~d~~~~~~~~ 130 (568)
T PRK07449 53 HFDERSAGFLALGLAKASKRPVAVIVTSGTAVANLYPAVIEA-GLTGVPLIVLTADRPPELRDCGA-NQAIDQLGLFGSY 130 (568)
T ss_pred ecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhhHHHHHH-hhcCCcEEEEECCCCHHHhcCCC-CceecHhhHhhhh
Confidence 35799999999999974 544444 46666556666666554 35789999987554442 11233 6677778888877
Q ss_pred CCcEEEEeC
Q 041265 296 PNMVVMKDI 304 (309)
Q Consensus 296 P~~~v~~Ps 304 (309)
-...+-.|.
T Consensus 131 t~~~v~~~~ 139 (568)
T PRK07449 131 PFTSLALPE 139 (568)
T ss_pred hhhccCCCC
Confidence 644444443
No 236
>PTZ00089 transketolase; Provisional
Probab=25.97 E-value=4.3e+02 Score=27.77 Aligned_cols=81 Identities=10% Similarity=0.138 Sum_probs=48.4
Q ss_pred ccccchHHHHHHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCccc-chhhhHHhhhcCccchhhhh-cCCeEE
Q 041265 63 ATIARMSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMH-EIDAFSREIEAGSRACFFED-LGLYYI 140 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~a-~G~~~~ 140 (309)
.... -.++++..++..+.|++++....+++. ..+++.+ .++++. .+++ -|+.++
T Consensus 437 ~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~-------------g~DG~THq~iedia----------~lR~iPn~~V~ 492 (661)
T PTZ00089 437 NFYG-YALGAVRLAALSHHPVIYVATHDSIGL-------------GEDGPTHQPVETLA----------LLRATPNLLVI 492 (661)
T ss_pred HHHH-HHHHHHHHHHhcCCCeEEEEeCCceec-------------CCCCCCcccHHHHH----------HHhcCCCcEEE
Confidence 5555 899999999888899998864443321 0112222 234442 1233 277888
Q ss_pred ecCCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 141 GPVDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 141 ~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
.+. |.+++.++++.+.+.. ++|++|-+
T Consensus 493 ~Pa---D~~E~~~~l~~al~~~-~gP~~irl 519 (661)
T PTZ00089 493 RPA---DGTETSGAYALALANA-KTPTILCL 519 (661)
T ss_pred ecC---CHHHHHHHHHHHHHcC-CCCEEEEe
Confidence 775 5566666666664221 68999854
No 237
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=25.80 E-value=3.9e+02 Score=27.58 Aligned_cols=83 Identities=13% Similarity=0.036 Sum_probs=52.6
Q ss_pred ceeeccchHHHHHHHHHHHhh-CCCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAA-EGLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTF 291 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~-~G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~ 291 (309)
|++.+ ..|+..+.+|.|-|+ .|+..++. +..+=+..++.-|.+. -..+.||+++..........-..+|..+...+
T Consensus 62 ~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl~~A-~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~ 139 (616)
T PRK07418 62 KHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIATA-QMDSVPMVVITGQVPRPAIGTDAFQETDIFGI 139 (616)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHH-HhcCCCEEEEecCCCccccCCCCcccccHHHH
Confidence 56666 789999999999997 46655554 5555455555555554 45689999887644442111223555666667
Q ss_pred HhcCCCc
Q 041265 292 MACLPNM 298 (309)
Q Consensus 292 ~~~iP~~ 298 (309)
++.+-.+
T Consensus 140 ~~~vtk~ 146 (616)
T PRK07418 140 TLPIVKH 146 (616)
T ss_pred hhhccee
Confidence 7765443
No 238
>PRK08617 acetolactate synthase; Reviewed
Probab=25.78 E-value=2e+02 Score=29.18 Aligned_cols=80 Identities=13% Similarity=-0.003 Sum_probs=50.9
Q ss_pred cchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCC
Q 041265 219 GIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLP 296 (309)
Q Consensus 219 gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP 296 (309)
-..|++.+.+|.|.|+. |...++. +..+=+..++.-|.+. -..+.||+++..........-..||..+...+++.+-
T Consensus 48 ~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl~~A-~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~t 126 (552)
T PRK08617 48 TRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGLVTA-TAEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPIT 126 (552)
T ss_pred eccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHHHHH-hhcCCCEEEEecCCcccccCCCCccccchhhhhhhhc
Confidence 35799999999999985 5544443 4555455555556554 3568999988754333111122477877778888765
Q ss_pred CcE
Q 041265 297 NMV 299 (309)
Q Consensus 297 ~~~ 299 (309)
.+.
T Consensus 127 k~~ 129 (552)
T PRK08617 127 KYS 129 (552)
T ss_pred ceE
Confidence 543
No 239
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=25.73 E-value=2.1e+02 Score=29.16 Aligned_cols=79 Identities=14% Similarity=0.032 Sum_probs=48.6
Q ss_pred chHHHHHHHHHHHhh-CCCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCC
Q 041265 220 IAEQHAVTFAAGLAA-EGLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPN 297 (309)
Q Consensus 220 IaE~~~vg~a~GlA~-~G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~ 297 (309)
..|++.+.+|-|.|+ .|...++. ++.+=+..++.-|.+. -..+.||+++..........-..+|..+...+++.+=.
T Consensus 55 rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gla~A-~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk 133 (566)
T PRK07282 55 RHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGIADA-MSDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITK 133 (566)
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHH-hhcCCCEEEEecccccccCCCCCccccChhchhcCCCc
Confidence 469999999999997 47655553 5655445555555554 35689999997654442111123555555566665544
Q ss_pred cE
Q 041265 298 MV 299 (309)
Q Consensus 298 ~~ 299 (309)
+.
T Consensus 134 ~s 135 (566)
T PRK07282 134 YN 135 (566)
T ss_pred ee
Confidence 43
No 240
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.71 E-value=67 Score=26.31 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=22.0
Q ss_pred hhhhcCCeEE-ecCCC-----CCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 041265 131 FFEDLGLYYI-GPVDG-----HNLEDLAYVLKQVKAIPDPGAVLIHVIT 173 (309)
Q Consensus 131 ~f~a~G~~~~-~~vDG-----~D~~~l~~al~~a~~~~~~~P~~I~~~T 173 (309)
..+..|+.|. -+|-| +|+++..++|.++ .+|++-+|+|
T Consensus 53 aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~ea-----egPVlayCrs 96 (130)
T COG3453 53 AAEAAGLTYTHIPVTGGGITEADVEAFQRALDEA-----EGPVLAYCRS 96 (130)
T ss_pred HHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHh-----CCCEEeeecC
Confidence 3455665543 14554 3444444444432 7799999987
No 241
>PRK07064 hypothetical protein; Provisional
Probab=25.49 E-value=3.3e+02 Score=27.43 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=52.1
Q ss_pred ccchHHHHHHHHHHHhh-CCCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc--cCCC-CCCCCChhHHHHH
Q 041265 218 VGIAEQHAVTFAAGLAA-EGLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL--VGAD-GPTHCGAFDTTFM 292 (309)
Q Consensus 218 ~gIaE~~~vg~a~GlA~-~G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~--~g~~-G~tH~~~~d~~~~ 292 (309)
....|++...+|.|.|+ .|+..++. +..+=...++..|.+. -..+.||+++...... .+.+ +..|+..+...++
T Consensus 46 ~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i~~A-~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~ 124 (544)
T PRK07064 46 PARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGALVEA-LTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTML 124 (544)
T ss_pred eeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHHHHH-HhcCCCEEEEeCCCCcccccCCCcccccccCHHHHh
Confidence 45689999999999997 46555553 5555455566666654 3578999988753332 1221 2346656777888
Q ss_pred hcCCCcE
Q 041265 293 ACLPNMV 299 (309)
Q Consensus 293 ~~iP~~~ 299 (309)
+.+-.+.
T Consensus 125 ~~~tk~~ 131 (544)
T PRK07064 125 RAVSKAA 131 (544)
T ss_pred hhhcceE
Confidence 7765543
No 242
>PLN02470 acetolactate synthase
Probab=25.21 E-value=2.6e+02 Score=28.65 Aligned_cols=83 Identities=14% Similarity=0.022 Sum_probs=52.3
Q ss_pred ceeeccchHHHHHHHHHHHhh-CCCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAA-EGLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTF 291 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~-~G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~ 291 (309)
|++.+ ..|++.+.+|-|.|+ .|...++. +..+=+..++.-|.+. -..+.||+++..........-..+|..+...+
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gia~A-~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l 130 (585)
T PLN02470 53 RNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLADA-LLDSVPLVAITGQVPRRMIGTDAFQETPIVEV 130 (585)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHH-HhcCCcEEEEecCCChhhcCCCcCcccchhhh
Confidence 56665 789999999999998 46555553 5666556666666664 35689999887544331101122556666666
Q ss_pred HhcCCCc
Q 041265 292 MACLPNM 298 (309)
Q Consensus 292 ~~~iP~~ 298 (309)
++.+-.+
T Consensus 131 ~~~~tk~ 137 (585)
T PLN02470 131 TRSITKH 137 (585)
T ss_pred hhhheEE
Confidence 6655433
No 243
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=25.07 E-value=3.7e+02 Score=25.41 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=21.9
Q ss_pred cCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 135 LGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 135 ~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
-|+.++-+. |..++..+++.+.+. ++|++|..
T Consensus 141 P~l~V~~P~---d~~e~~~~l~~a~~~--~~Pv~i~~ 172 (327)
T PRK09212 141 PGLKVVAPY---FAADCKGLLKTAIRD--PNPVIFLE 172 (327)
T ss_pred CCCEEEeeC---CHHHHHHHHHHHHhC--CCcEEEEE
Confidence 388988774 555666666666554 77999854
No 244
>PRK05858 hypothetical protein; Provisional
Probab=24.94 E-value=3.2e+02 Score=27.67 Aligned_cols=80 Identities=14% Similarity=0.008 Sum_probs=50.5
Q ss_pred cchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCC
Q 041265 219 GIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLP 296 (309)
Q Consensus 219 gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP 296 (309)
...|++.+.+|-|.|+. |.-.++. +..+=+..++.-|.+. -..+.||+++.........+-..+|..+...+++.+-
T Consensus 48 ~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i~~A-~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~t 126 (542)
T PRK05858 48 VRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAMAAA-QFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVT 126 (542)
T ss_pred eccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHHHHH-HhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhhh
Confidence 35799999999999986 5444433 4544445555566554 4678999988754443211123366777777777766
Q ss_pred CcE
Q 041265 297 NMV 299 (309)
Q Consensus 297 ~~~ 299 (309)
.+.
T Consensus 127 k~~ 129 (542)
T PRK05858 127 KFA 129 (542)
T ss_pred ceE
Confidence 543
No 245
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=24.92 E-value=5.6e+02 Score=23.74 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=57.1
Q ss_pred CchhhHhhHhhcccccccchhhHhHhHhcCC-CCeEEEEEeCCccc----cchHHHHHHHHhhcc---CcEEEEEeCcch
Q 041265 21 HSSTSISAGLRTRINYFRYVGMAVGRDLLGK-NNHVISVIVEGATI----ARMSYEAINNAGVLN---KALKRLHSNPQF 92 (309)
Q Consensus 21 ~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~-~~~v~~~~GDG~l~----eG~~~EAln~A~~~~---~~Li~i~~nn~~ 92 (309)
++.+||=.|. .+.--.+.++. ...+++++-||=.+ .|...|++..|.... .++++|+--+.+
T Consensus 155 PL~~aL~~a~----------ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~ 224 (261)
T COG1240 155 PLADALRQAY----------EVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSE 224 (261)
T ss_pred chHHHHHHHH----------HHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCcc
Confidence 4555555555 44433333332 45688899999654 455788888888775 344555222211
Q ss_pred hhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHH
Q 041265 93 RQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQ 157 (309)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~ 157 (309)
...+ +. ......+|-+|+ .+|...-+.|..+.++
T Consensus 225 --------------~~~g--------~~--------~~iA~~~Gg~~~-~L~~l~~~~i~~~~r~ 258 (261)
T COG1240 225 --------------VRLG--------LA--------EEIARASGGEYY-HLDDLSDDSIVSAVRQ 258 (261)
T ss_pred --------------cccc--------HH--------HHHHHHhCCeEE-ecccccchHHHHHHHh
Confidence 0011 11 123467899998 8898888888887765
No 246
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=24.87 E-value=2.4e+02 Score=28.76 Aligned_cols=79 Identities=18% Similarity=0.129 Sum_probs=49.8
Q ss_pred cchHHHHHHHHHHHhh-CCCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCC
Q 041265 219 GIAEQHAVTFAAGLAA-EGLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLP 296 (309)
Q Consensus 219 gIaE~~~vg~a~GlA~-~G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP 296 (309)
...|++.+.+|-|.|+ .|.-.++. +..+=+..++.-|.+. -..+.||+++....+........||..+...+++.+-
T Consensus 45 ~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gla~A-~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l~~~vt 123 (579)
T TIGR03457 45 VVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAIAAA-YWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFT 123 (579)
T ss_pred eccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHHH-hhcCCCEEEEeCCCccccCCCCCCcccchhhhhhcce
Confidence 3579999999999997 46665553 4555445555556554 3568999998754443211122367666667777654
Q ss_pred Cc
Q 041265 297 NM 298 (309)
Q Consensus 297 ~~ 298 (309)
.+
T Consensus 124 k~ 125 (579)
T TIGR03457 124 KY 125 (579)
T ss_pred eE
Confidence 43
No 247
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.66 E-value=2.5e+02 Score=28.62 Aligned_cols=79 Identities=13% Similarity=-0.009 Sum_probs=50.6
Q ss_pred cchHHHHHHHHHHHhh-CCCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCC
Q 041265 219 GIAEQHAVTFAAGLAA-EGLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLP 296 (309)
Q Consensus 219 gIaE~~~vg~a~GlA~-~G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP 296 (309)
...|++.+.+|-|.|+ .|...++. +..+=+..++.-|.+. -..+.||+++..........-..+|..+..++++.+=
T Consensus 47 ~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gla~A-~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~t 125 (563)
T PRK08527 47 TRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGLATA-YMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRPCV 125 (563)
T ss_pred eccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHHHHH-hhcCCCEEEEecCCCccccCCCCCcccchhhhhhccc
Confidence 4689999999999997 56555553 5665455566666654 3568999988754443211112366666667776654
Q ss_pred Cc
Q 041265 297 NM 298 (309)
Q Consensus 297 ~~ 298 (309)
.+
T Consensus 126 k~ 127 (563)
T PRK08527 126 KH 127 (563)
T ss_pred ce
Confidence 43
No 248
>PRK08611 pyruvate oxidase; Provisional
Probab=24.11 E-value=2.6e+02 Score=28.57 Aligned_cols=84 Identities=12% Similarity=-0.010 Sum_probs=53.3
Q ss_pred ceeeccchHHHHHHHHHHHhh-CCCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAA-EGLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTF 291 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~-~G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~ 291 (309)
|++. ...|++.+.+|.|.|+ .|...++. +..+=+..++.-|.+. -..+.||+++..........-..+|..+...+
T Consensus 45 ~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gla~A-~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l 122 (576)
T PRK08611 45 KFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGLYDA-KMDHVPVLALAGQVTSDLLGTDFFQEVNLEKM 122 (576)
T ss_pred eEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHHHHH-hhcCCCEEEEecCCcccccCCCCccccCHHHH
Confidence 3443 6789999999999997 46444443 4555455566666554 35689999987654442111223566667788
Q ss_pred HhcCCCcE
Q 041265 292 MACLPNMV 299 (309)
Q Consensus 292 ~~~iP~~~ 299 (309)
++.+-.+.
T Consensus 123 ~~~itk~~ 130 (576)
T PRK08611 123 FEDVAVYN 130 (576)
T ss_pred hhccccee
Confidence 88776553
No 249
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=24.03 E-value=3.2e+02 Score=25.38 Aligned_cols=105 Identities=20% Similarity=0.120 Sum_probs=59.4
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLC 96 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~ 96 (309)
||-|.=++-|+... .+..| ++.+-|.+=-.-+-+...=+|-+.|-......-++..|. . .
T Consensus 24 fSGGvDSslLa~la---------------~~~lG-~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~-~---~ 83 (269)
T COG1606 24 FSGGVDSSLLAKLA---------------KEALG-DNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNR-M---D 83 (269)
T ss_pred ecCCccHHHHHHHH---------------HHHhc-cceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhh-c---c
Confidence 56666666555443 34445 333333333377778888899999999887777776553 1 0
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHH
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAY 153 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~ 153 (309)
+.- ...+. .++ -+-++.+........+..|++++ +||.|..++..
T Consensus 84 ~~~-------~~n~~--~rC-Y~CK~~v~~~l~~~a~~~Gyd~V--~dGtNasDl~~ 128 (269)
T COG1606 84 PEF-------KENPE--NRC-YLCKRAVYSTLVEEAEKRGYDVV--ADGTNASDLFD 128 (269)
T ss_pred hhh-------ccCCC--Ccc-hHHHHHHHHHHHHHHHHcCCCEE--EeCCcHHHhcC
Confidence 000 00111 111 01111112222445677899997 89999999874
No 250
>PLN02790 transketolase
Probab=23.89 E-value=5.3e+02 Score=27.02 Aligned_cols=77 Identities=9% Similarity=0.096 Sum_probs=44.4
Q ss_pred hHHHHHHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcc-cchhhhHHhhhcCccchhhhh-cCCeEEecCCC
Q 041265 68 MSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQM-HEIDAFSREIEAGSRACFFED-LGLYYIGPVDG 145 (309)
Q Consensus 68 ~~~EAln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~a-~G~~~~~~vDG 145 (309)
..++++..++..+.|++++....+.+. . -+++. +.++++. .+++ -|+.++.+.|
T Consensus 431 ~~~~~ir~~al~~lpV~~v~thdg~~~-G------------~DG~THq~iedla----------~lR~iPnl~V~~PaD- 486 (654)
T PLN02790 431 YMRAAMRLSALSEAGVIYVMTHDSIGL-G------------EDGPTHQPIEHLA----------SLRAMPNILMLRPAD- 486 (654)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCceee-c------------CCCCCcccHHHHH----------HhcCCCCcEEEeCCC-
Confidence 788999999888899998874433321 0 11222 2234442 1222 3788887865
Q ss_pred CCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 146 HNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 146 ~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
.+++.++++.+.+.. ++|++|-.
T Consensus 487 --~~E~~~~l~~al~~~-~gP~~irl 509 (654)
T PLN02790 487 --GNETAGAYKVAVTNR-KRPTVLAL 509 (654)
T ss_pred --HHHHHHHHHHHHHcC-CCCEEEEe
Confidence 455555565554321 67988743
No 251
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=23.82 E-value=2.7e+02 Score=28.50 Aligned_cols=78 Identities=14% Similarity=0.011 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCC
Q 041265 220 IAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPN 297 (309)
Q Consensus 220 IaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~ 297 (309)
..|++.+.+|-|.|+. |...++. ++.+=+..++.-|.+. -..+.||+++.............+|..+...+++.+=.
T Consensus 45 ~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i~~A-~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk 123 (586)
T PRK06276 45 RHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGIATA-YADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITK 123 (586)
T ss_pred ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHH-HhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcc
Confidence 4899999999999985 6444443 4555455566666664 35789999887544432112234666666677776544
Q ss_pred c
Q 041265 298 M 298 (309)
Q Consensus 298 ~ 298 (309)
+
T Consensus 124 ~ 124 (586)
T PRK06276 124 H 124 (586)
T ss_pred e
Confidence 4
No 252
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.57 E-value=4e+02 Score=27.30 Aligned_cols=80 Identities=13% Similarity=0.040 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCC
Q 041265 220 IAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPN 297 (309)
Q Consensus 220 IaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~ 297 (309)
..|++.+.+|-|.|+. |...++. +..+=+..++.-|.+. -..+.||+++..........-..+|..+...+++.+=.
T Consensus 66 rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl~~A-~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk 144 (587)
T PRK06965 66 RHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGIATA-YMDSIPMVVISGQVPTAAIGQDAFQECDTVGITRPIVK 144 (587)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHH-hhcCCCEEEEecCCCccccCCCCcccccHHHHhcCCcc
Confidence 5799999999999985 6555553 5655455566666554 35789999987654442111123566666677776655
Q ss_pred cEE
Q 041265 298 MVV 300 (309)
Q Consensus 298 ~~v 300 (309)
+..
T Consensus 145 ~~~ 147 (587)
T PRK06965 145 HNF 147 (587)
T ss_pred eeE
Confidence 433
No 253
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=23.37 E-value=2.8e+02 Score=28.22 Aligned_cols=83 Identities=16% Similarity=0.076 Sum_probs=51.8
Q ss_pred ceeeccchHHHHHHHHHHHhhCCCee-EEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAEGLKP-FCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTF 291 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~G~~p-i~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~ 291 (309)
|++. ...|++.+.+|.|.|+..-+| ++. +..+=+..++.-|.+. -..+.||+++.........+-..+|.++...+
T Consensus 53 ~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl~~A-~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 130 (564)
T PRK08155 53 RHIL-ARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAIADA-RLDSIPLVCITGQVPASMIGTDAFQEVDTYGI 130 (564)
T ss_pred eEEE-eccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHHHHH-HhcCCCEEEEeccCCcccccCCCccccchhhh
Confidence 4444 567999999999999854344 443 5555555566666664 46789999887544432111223566666667
Q ss_pred HhcCCCc
Q 041265 292 MACLPNM 298 (309)
Q Consensus 292 ~~~iP~~ 298 (309)
++.+-.+
T Consensus 131 ~~~~tk~ 137 (564)
T PRK08155 131 SIPITKH 137 (564)
T ss_pred hhccceE
Confidence 7665544
No 254
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=23.17 E-value=6.8e+02 Score=26.32 Aligned_cols=80 Identities=10% Similarity=0.149 Sum_probs=43.2
Q ss_pred hHHHHH-HHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcccc-hhhhHHhhhcCccchhhhh-cCCeEEecCC
Q 041265 68 MSYEAI-NNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHE-IDAFSREIEAGSRACFFED-LGLYYIGPVD 144 (309)
Q Consensus 68 ~~~EAl-n~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~a-~G~~~~~~vD 144 (309)
-.+|-+ +.++..+.|++++.+..++. . .+++.+. +++.. .++. -|+.++.+.
T Consensus 436 RA~DQI~~dva~~~lpV~~v~~~aG~~--g------------~dG~TH~~~~Dia----------~lr~iPnl~V~~Ps- 490 (641)
T PLN02234 436 RAYDQVVHDVDLQKLPVRFAIDRAGLM--G------------ADGPTHCGAFDVT----------FMACLPNMIVMAPS- 490 (641)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCccC--C------------CCCccccccHHHH----------HHhcCCCCEEEeeC-
Confidence 666666 45566678998887766541 1 1112211 22221 1222 388888775
Q ss_pred CCCHHHHHHHHHHhhcCCCCCcEEEEEEeeecc
Q 041265 145 GHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEK 177 (309)
Q Consensus 145 G~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~ 177 (309)
|..++..+++.+...+ ++|++| +..|+.
T Consensus 491 --d~~E~~~~l~~a~~~~-~~Pv~i--r~~R~~ 518 (641)
T PLN02234 491 --DEAELFNMVATAAAID-DRPSCF--RYHRGN 518 (641)
T ss_pred --CHHHHHHHHHHHHhCC-CCCEEE--Eeeccc
Confidence 5555556666544321 579988 444443
No 255
>PRK12754 transketolase; Reviewed
Probab=23.06 E-value=7.9e+02 Score=25.93 Aligned_cols=81 Identities=9% Similarity=0.069 Sum_probs=46.6
Q ss_pred ccccchHHHHHHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcc-cchhhhHHhhhcCccchhhhh-cCCeEE
Q 041265 63 ATIARMSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQM-HEIDAFSREIEAGSRACFFED-LGLYYI 140 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~a-~G~~~~ 140 (309)
.... ..+|++.+++..+.|+++|-...+++. ..+++. +.++++.- +++ -|+.++
T Consensus 436 ~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~-------------G~DG~THq~iEdla~----------lR~iPn~~V~ 491 (663)
T PRK12754 436 MFVE-YARNAVRMAALMKQRQVMVYTHDSIGL-------------GEDGPTHQPVEQVAS----------LRVTPNMSTW 491 (663)
T ss_pred HHHH-HHHHHHHHHHHcCCCeEEEEECCcccc-------------CCCCCCcccHHHHHH----------HhcCCCcEEe
Confidence 4445 999999999887899988765544321 112222 23344421 222 478888
Q ss_pred ecCCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 141 GPVDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 141 ~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
.+.|.+...+ +++.+.+.. ++|+.|-+
T Consensus 492 ~PaD~~E~~~---~~~~a~~~~-~gP~yirl 518 (663)
T PRK12754 492 RPCDQVESAV---AWKYGVERQ-DGPTALIL 518 (663)
T ss_pred cCCCHHHHHH---HHHHHHhCC-CCCEEEEe
Confidence 7866555544 444443321 67997644
No 256
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.96 E-value=2.8e+02 Score=28.24 Aligned_cols=83 Identities=13% Similarity=-0.003 Sum_probs=50.9
Q ss_pred ceeeccchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTF 291 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~ 291 (309)
|++.+ ..|++.+.+|.|.|+. |...++. +..+=...++.-|.+. -..+.||+++.............+|..+...+
T Consensus 44 ~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gia~A-~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~ 121 (572)
T PRK08979 44 EHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGIATA-YMDSIPMVVLSGQVPSNLIGNDAFQECDMIGI 121 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHHHHH-hhcCCCEEEEecCCCccccCCCCCcccchhHH
Confidence 44444 6799999999999984 7655554 4555444555555554 35689999887544442111123566666677
Q ss_pred HhcCCCc
Q 041265 292 MACLPNM 298 (309)
Q Consensus 292 ~~~iP~~ 298 (309)
++.+=.+
T Consensus 122 ~~~itk~ 128 (572)
T PRK08979 122 SRPVVKH 128 (572)
T ss_pred hhhceeE
Confidence 7665443
No 257
>PF08830 DUF1806: Protein of unknown function (DUF1806); InterPro: IPR014934 This entry consists of bacterial uncharacterised proteins. The structure of one of the proteins has been solved and it adopts a beta barrel-like structure. ; PDB: 1NJH_A.
Probab=22.64 E-value=1.4e+02 Score=23.96 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHhhcCCCCCcEEEEEEeeecc
Q 041265 147 NLEDLAYVLKQVKAIPDPGAVLIHVITEKEK 177 (309)
Q Consensus 147 D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~ 177 (309)
+.+++.+.|.+.. ++|+.||+.|.-|-
T Consensus 4 ~~~~VQ~~l~~~~----~~~vYlHlETTnGA 30 (114)
T PF08830_consen 4 DKEEVQALLDSFA----NKDVYLHLETTNGA 30 (114)
T ss_dssp -HHHHHHHHHHTT----TS-EEEEEEEEE--
T ss_pred CHHHHHHHHHHhc----CCceEEEEeecCch
Confidence 4567777777766 56999999999764
No 258
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=22.32 E-value=71 Score=28.51 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=17.5
Q ss_pred HhHhHhcCCCCeEEEEEeCCcccc
Q 041265 43 AVGRDLLGKNNHVISVIVEGATIA 66 (309)
Q Consensus 43 A~a~k~~~~~~~v~~~~GDG~l~e 66 (309)
+++...++.+...+|++|||+..=
T Consensus 163 ~i~~lrk~~~~~~~~mvGDGatDl 186 (227)
T KOG1615|consen 163 VIALLRKNYNYKTIVMVGDGATDL 186 (227)
T ss_pred HHHHHHhCCChheeEEecCCcccc
Confidence 334444467788999999999853
No 259
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=22.15 E-value=71 Score=35.80 Aligned_cols=89 Identities=15% Similarity=0.015 Sum_probs=54.6
Q ss_pred ceeeccchHHHHHHHHHHH---------hhCCCeeEEeecHHHHHhHHHHHHHhhhhC----CCCeEEEEeC-CCccCCC
Q 041265 214 RCFDVGIAEQHAVTFAAGL---------AAEGLKPFCAIYSSFLQRCFDQVAHDVDLQ----KLPVRFAIDR-AGLVGAD 279 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~Gl---------A~~G~~pi~~~~~~F~~ra~dqi~~~~a~~----~~pv~~~~~~-~g~~g~~ 279 (309)
-+|.-++.|.-...++.|. +..|.+-++++=..=+.|+.|.+++. ++. +.-|++++.. -|...
T Consensus 83 i~fe~~~NEkvAae~~~GsQ~~~~~~~a~~~Gv~~l~y~K~pGvn~aaD~l~~~-n~~G~~~~GGvv~v~gDDpg~~S-- 159 (1165)
T PRK09193 83 IVFQPGLNEDLAATAVWGSQQVNLFPGAKYDGVFGMWYGKGPGVDRSGDVFRHA-NAAGTSPHGGVLALAGDDHAAKS-- 159 (1165)
T ss_pred eEEeeccCHHHHHHHHhhhcccccccceeeccceEEEecCcCCccccHhHHHHH-HhhcCCCCCcEEEEEecCCCCcc--
Confidence 5899999999999999554 55666555544333357999999865 332 3344444332 22211
Q ss_pred CCCCCChhHHHHHhcCCCcEEEEeCCCCC
Q 041265 280 GPTHCGAFDTTFMACLPNMVVMKDIKLVL 308 (309)
Q Consensus 280 G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e 308 (309)
-|...|--++...-+|-|+.|+|+.|
T Consensus 160 ---Sq~eqdSr~~~~~a~iPvl~Ps~~qE 185 (1165)
T PRK09193 160 ---STLPHQSEHAFKAAGMPVLFPANVQE 185 (1165)
T ss_pred ---ccchhhhHHHHHHcCCceeCCCCHHH
Confidence 11122333555556777999999876
No 260
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=22.14 E-value=83 Score=29.43 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=32.4
Q ss_pred cCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccC
Q 041265 135 LGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKA 178 (309)
Q Consensus 135 ~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G 178 (309)
+|+...+.+|-.|.+.+..+++.+.+ ++|..+++.|.-|..
T Consensus 64 ~giPi~~~I~i~dse~v~raI~~~~~---~~~IdLii~TpGG~v 104 (285)
T PF01972_consen 64 LGIPIYRYIDIDDSEFVLRAIREAPK---DKPIDLIIHTPGGLV 104 (285)
T ss_pred eccccceeEcHhhHHHHHHHHHhcCC---CCceEEEEECCCCcH
Confidence 46665566888899999999988765 569999999987764
No 261
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=21.99 E-value=3.6e+02 Score=27.79 Aligned_cols=83 Identities=18% Similarity=0.078 Sum_probs=51.8
Q ss_pred ceeeccchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTF 291 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~ 291 (309)
+++.+ ..|++.+.+|.|.|+. |...++. +..+=+..++.-|.+. -..+.||+++..........-..+|..+...+
T Consensus 71 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~A-~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~l 148 (612)
T PRK07789 71 RHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPIADA-NMDSVPVVAITGQVGRGLIGTDAFQEADIVGI 148 (612)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHH-hhcCCCEEEEecCCCccccCCCcCcccchhhh
Confidence 34443 6899999999999985 6555543 4555445555566554 45689999987654442111123566666677
Q ss_pred HhcCCCc
Q 041265 292 MACLPNM 298 (309)
Q Consensus 292 ~~~iP~~ 298 (309)
++.+-.+
T Consensus 149 ~~~~tk~ 155 (612)
T PRK07789 149 TMPITKH 155 (612)
T ss_pred hhcceeE
Confidence 7665544
No 262
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=21.90 E-value=2.8e+02 Score=28.30 Aligned_cols=79 Identities=14% Similarity=0.033 Sum_probs=51.0
Q ss_pred cchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCC
Q 041265 219 GIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLP 296 (309)
Q Consensus 219 gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP 296 (309)
...|++.+.+|-|.|+. |+..++. +..+=+..++.-|.+. -..+.||+++.........+-.++|..+...+++.+=
T Consensus 44 ~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i~~A-~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~~~~~vt 122 (575)
T TIGR02720 44 VRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYDA-KEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADVA 122 (575)
T ss_pred eccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHHHH-hhcCCCEEEEecCCccccCCCCCcceechhhhhhhcc
Confidence 35699999999999974 5555553 4555455566666554 3568999998765444222234467777677777654
Q ss_pred Cc
Q 041265 297 NM 298 (309)
Q Consensus 297 ~~ 298 (309)
.+
T Consensus 123 k~ 124 (575)
T TIGR02720 123 VY 124 (575)
T ss_pred eE
Confidence 43
No 263
>PRK07524 hypothetical protein; Provisional
Probab=21.60 E-value=3.2e+02 Score=27.54 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=49.9
Q ss_pred cchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc--cCCC-CCCCCChhHHHHHh
Q 041265 219 GIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL--VGAD-GPTHCGAFDTTFMA 293 (309)
Q Consensus 219 gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~--~g~~-G~tH~~~~d~~~~~ 293 (309)
...|++.+.+|-|.|+. |...++. +..+=+..++.-|.+. -..+.||+++...... .+.+ +..|+..+...+++
T Consensus 45 ~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi~~A-~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~ 123 (535)
T PRK07524 45 PRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAMGQA-YADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVA 123 (535)
T ss_pred eccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHH-HhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhh
Confidence 45799999999999974 5544553 4555445555666554 3568999988754433 1221 34455456667777
Q ss_pred cCCCc
Q 041265 294 CLPNM 298 (309)
Q Consensus 294 ~iP~~ 298 (309)
.+--+
T Consensus 124 ~~tk~ 128 (535)
T PRK07524 124 GVAAF 128 (535)
T ss_pred hhcee
Confidence 65543
No 264
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.45 E-value=3.1e+02 Score=27.90 Aligned_cols=82 Identities=13% Similarity=-0.025 Sum_probs=50.3
Q ss_pred ceeeccchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTF 291 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~ 291 (309)
|++.+ ..|++.+.+|-|.|+. |...++. +..+=+..++.-|.+. -..+.||+++..........-..+|..+...+
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i~~A-~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l 121 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGIATA-YTDSVPLVILSGQVPSNLIGTDAFQECDMLGI 121 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHHHHH-hhcCCCEEEEecCCCccccCCCcccccchhhh
Confidence 44443 6899999999999985 5444443 4554445555566554 35689999887544432111223666666677
Q ss_pred HhcCCC
Q 041265 292 MACLPN 297 (309)
Q Consensus 292 ~~~iP~ 297 (309)
++.+=.
T Consensus 122 ~~~vtk 127 (574)
T PRK06882 122 SRPVVK 127 (574)
T ss_pred hhcccc
Confidence 766543
No 265
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=21.28 E-value=2.5e+02 Score=23.39 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=33.3
Q ss_pred CCCceeeccchHHHHHHHHHHHhhCCCeeEEee--cHHHHHhHHHHHHHhhhhC-CCCeEEEE-eCCCc
Q 041265 211 FPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAI--YSSFLQRCFDQVAHDVDLQ-KLPVRFAI-DRAGL 275 (309)
Q Consensus 211 ~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~--~~~F~~ra~dqi~~~~a~~-~~pv~~~~-~~~g~ 275 (309)
.|.+++..|-.-. -++.|.|+++.-.+|++.. -..|++..-+ +... ... +.|+++++ ..+++
T Consensus 34 ~~~~~~~~gsmG~-~lp~AiGa~~a~~~~Vv~i~GDG~f~m~~~e-l~t~-~~~~~~~i~~vV~nN~~~ 99 (157)
T cd02001 34 RDGHFYMLGSMGL-AGSIGLGLALGLSRKVIVVDGDGSLLMNPGV-LLTA-GEFTPLNLILVVLDNRAY 99 (157)
T ss_pred CCCCEEeecchhh-HHHHHHHHHhcCCCcEEEEECchHHHhcccH-HHHH-HHhcCCCEEEEEEeCccc
Confidence 4778875222111 1236777776433667654 5667655433 2222 333 58988776 55555
No 266
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=21.22 E-value=3.8e+02 Score=26.28 Aligned_cols=38 Identities=21% Similarity=0.115 Sum_probs=21.7
Q ss_pred CCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchh
Q 041265 52 NNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFR 93 (309)
Q Consensus 52 ~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~ 93 (309)
++.++.+.|-|.+ .+||.-.--....--+++..|..|+
T Consensus 55 ~~~~~ll~gsGt~----amEAav~sl~~pgdkVLv~~nG~FG 92 (383)
T COG0075 55 NGDVVLLSGSGTL----AMEAAVASLVEPGDKVLVVVNGKFG 92 (383)
T ss_pred CCcEEEEcCCcHH----HHHHHHHhccCCCCeEEEEeCChHH
Confidence 4478888898877 5666533222223344555776553
No 267
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.47 E-value=1e+02 Score=26.66 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=22.2
Q ss_pred hhcCCeEEecCCCCCHHHHHHHHHHh
Q 041265 133 EDLGLYYIGPVDGHNLEDLAYVLKQV 158 (309)
Q Consensus 133 ~a~G~~~~~~vDG~D~~~l~~al~~a 158 (309)
+-|||+++-.|+|+|...|.+++.+-
T Consensus 118 ~rFgfPfI~aVkg~~k~~Il~a~~~R 143 (176)
T COG3195 118 ERFGFPFIIAVKGNTKDTILAAFERR 143 (176)
T ss_pred HhcCCceEEeecCCCHHHHHHHHHHH
Confidence 45899999889999999999998643
No 268
>PRK02399 hypothetical protein; Provisional
Probab=20.11 E-value=3.5e+02 Score=26.71 Aligned_cols=42 Identities=29% Similarity=0.421 Sum_probs=29.7
Q ss_pred HHHhhhhCCCCeEEEEeCCCcc---CCCCCCCCChhHHHHHhcCC
Q 041265 255 VAHDVDLQKLPVRFAIDRAGLV---GADGPTHCGAFDTTFMACLP 296 (309)
Q Consensus 255 i~~~~a~~~~pv~~~~~~~g~~---g~~G~tH~~~~d~~~~~~iP 296 (309)
|-..+...+.||+++.+..|++ .++++.|...-|.++|.++-
T Consensus 325 ia~kLn~a~gpv~vllP~~G~S~~D~~G~~f~Dpead~alf~~l~ 369 (406)
T PRK02399 325 IAEKLNRAKGPVAFLIPLGGVSALDRPGQPFHDPEADAAFFDALE 369 (406)
T ss_pred HHHHHhcCCCCeEEEEeCCCCccccCCCCCccChhHHHHHHHHHH
Confidence 3334445678999999999995 34566676666778877653
No 269
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=20.09 E-value=8.4e+02 Score=23.97 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=54.7
Q ss_pred hHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccC-cEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhh
Q 041265 46 RDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNK-ALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIE 124 (309)
Q Consensus 46 ~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~-~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (309)
.++.|.+.-.|.=+| |+-+.+.+.||++......+ ..++|+-=.+ +.+++..+++++
T Consensus 275 i~~~Gg~PANFLDvG-GgA~~e~v~~a~~~il~d~~vk~IfVNIfGG---------------------I~rcD~vA~GIi 332 (387)
T COG0045 275 VKLYGGKPANFLDVG-GGATAERVKEAFKLILSDPNVKAIFVNIFGG---------------------ITRCDEVAEGII 332 (387)
T ss_pred HHHcCCCCcceeecC-CCCCHHHHHHHHHHHhcCCCccEEEEEEccC---------------------cCccHHHHHHHH
Confidence 456676766788889 77778889999998876542 3455422221 233445555542
Q ss_pred cCccchhhhhcC--CeEEecCCCCCHHHHHHHHHH
Q 041265 125 AGSRACFFEDLG--LYYIGPVDGHNLEDLAYVLKQ 157 (309)
Q Consensus 125 ~~~~~~~f~a~G--~~~~~~vDG~D~~~l~~al~~ 157 (309)
...+..+ +..+-+.+|+|.++=.+.|++
T Consensus 333 -----~Al~e~~~~vPlVVRL~GtN~e~Gk~iL~e 362 (387)
T COG0045 333 -----AALKEVGVNVPLVVRLEGTNVEEGKRILAE 362 (387)
T ss_pred -----HHHHhcCCCCCEEEEcCCCCHHHHHHHHHH
Confidence 2234444 555557899999998888765
Done!