Query 041265
Match_columns 309
No_of_seqs 171 out of 1879
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 08:43:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 1.8E-59 6.1E-64 477.0 22.8 296 1-309 97-460 (629)
2 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 2.9E-59 9.9E-64 474.9 23.1 295 1-309 95-457 (621)
3 3rim_A Transketolase, TK; TPP, 100.0 9.3E-59 3.2E-63 473.8 18.2 274 1-309 106-529 (700)
4 3l84_A Transketolase; TKT, str 100.0 1.3E-58 4.6E-63 468.9 17.5 273 1-309 88-479 (632)
5 3kom_A Transketolase; rossmann 100.0 1.7E-57 5.9E-62 463.3 21.6 274 1-309 89-500 (663)
6 3uk1_A Transketolase; structur 100.0 2.8E-57 9.5E-62 463.9 16.3 274 1-309 128-545 (711)
7 3mos_A Transketolase, TK; thia 100.0 4.1E-57 1.4E-61 458.0 17.3 271 1-308 95-451 (616)
8 3m49_A Transketolase; alpha-be 100.0 1.2E-56 4.2E-61 458.2 16.7 274 1-309 113-524 (690)
9 1r9j_A Transketolase; domains, 100.0 5.3E-55 1.8E-59 446.5 17.4 275 1-309 89-499 (673)
10 1itz_A Transketolase; calvin c 100.0 1.2E-54 4.2E-59 444.1 19.4 275 1-309 100-512 (675)
11 2r8o_A Transketolase 1, TK 1; 100.0 1.3E-54 4.4E-59 443.7 18.7 275 1-309 87-499 (669)
12 1gpu_A Transketolase; transfer 100.0 1.3E-54 4.5E-59 444.2 17.8 275 1-309 90-507 (680)
13 2e6k_A Transketolase; structur 100.0 4.7E-54 1.6E-58 438.4 18.7 274 1-309 91-494 (651)
14 2qtc_A Pyruvate dehydrogenase 100.0 1.4E-49 4.9E-54 414.4 22.6 278 1-309 162-666 (886)
15 2jgd_A 2-oxoglutarate dehydrog 100.0 1.1E-42 3.7E-47 364.0 15.4 258 17-308 318-756 (933)
16 2yic_A 2-oxoglutarate decarbox 100.0 1E-41 3.6E-46 354.7 15.4 256 17-308 242-688 (868)
17 3ahc_A Phosphoketolase, xylulo 100.0 3.5E-41 1.2E-45 346.6 18.8 271 3-309 152-604 (845)
18 2xt6_A 2-oxoglutarate decarbox 100.0 7.9E-41 2.7E-45 355.6 15.9 258 17-308 487-933 (1113)
19 1ik6_A Pyruvate dehydrogenase; 99.9 2.9E-28 1E-32 232.9 6.8 123 185-309 52-201 (369)
20 1qs0_B 2-oxoisovalerate dehydr 99.9 2.9E-26 9.9E-31 216.7 7.5 122 185-308 6-154 (338)
21 2ozl_B PDHE1-B, pyruvate dehyd 99.9 7.8E-26 2.7E-30 214.1 9.4 124 184-309 15-165 (341)
22 2bfd_B 2-oxoisovalerate dehydr 99.9 4.3E-26 1.5E-30 215.9 6.5 123 184-308 21-170 (342)
23 1w85_B Pyruvate dehydrogenase 99.9 2.2E-25 7.6E-30 209.5 9.6 122 185-308 4-152 (324)
24 1umd_B E1-beta, 2-OXO acid deh 99.9 2.7E-25 9.4E-30 208.8 8.6 122 185-308 5-153 (324)
25 2bfd_A 2-oxoisovalerate dehydr 99.9 1.1E-23 3.9E-28 203.0 11.9 133 17-183 159-295 (400)
26 1w85_A Pyruvate dehydrogenase 99.9 1.8E-23 6E-28 199.7 13.0 135 17-183 139-276 (368)
27 1qs0_A 2-oxoisovalerate dehydr 99.9 1.8E-23 6E-28 201.9 11.8 136 17-183 178-315 (407)
28 1umd_A E1-alpha, 2-OXO acid de 99.9 3.9E-23 1.3E-27 197.3 12.2 136 16-183 140-277 (367)
29 2ozl_A PDHE1-A type I, pyruvat 99.9 1.3E-22 4.5E-27 193.3 11.4 133 17-183 137-271 (365)
30 4feg_A Pyruvate oxidase; carba 99.4 2.3E-13 7.8E-18 137.4 8.4 130 18-181 418-552 (603)
31 1ybh_A Acetolactate synthase, 99.4 4.5E-13 1.5E-17 134.9 6.8 136 17-179 423-562 (590)
32 2uz1_A Benzaldehyde lyase; thi 99.4 9.7E-13 3.3E-17 131.6 9.1 131 17-177 416-548 (563)
33 2iht_A Carboxyethylarginine sy 99.3 1.5E-12 5.1E-17 130.6 9.1 128 17-175 433-561 (573)
34 2pan_A Glyoxylate carboligase; 99.3 1.4E-12 4.8E-17 131.9 8.7 137 17-178 439-583 (616)
35 1q6z_A BFD, BFDC, benzoylforma 99.3 2.1E-12 7.2E-17 128.2 9.0 125 20-176 401-526 (528)
36 2vk8_A Pyruvate decarboxylase 99.3 2.8E-12 9.7E-17 128.2 8.9 131 17-178 410-545 (563)
37 1ozh_A ALS, acetolactate synth 99.3 2.3E-12 7.9E-17 129.1 8.0 129 17-178 417-546 (566)
38 2pgn_A Cyclohexane-1,2-dione h 99.3 1.7E-12 5.8E-17 130.6 6.8 131 18-181 422-553 (589)
39 1t9b_A Acetolactate synthase, 99.3 3.8E-12 1.3E-16 130.2 9.4 131 17-179 510-641 (677)
40 1ovm_A Indole-3-pyruvate decar 99.3 8.8E-12 3E-16 124.3 10.1 126 17-178 405-535 (552)
41 2vbi_A Pyruvate decarboxylase; 99.3 5.3E-12 1.8E-16 126.4 7.8 125 17-178 406-536 (566)
42 2nxw_A Phenyl-3-pyruvate decar 99.3 5.8E-12 2E-16 126.2 7.5 124 18-178 420-545 (565)
43 3eya_A Pyruvate dehydrogenase 99.2 6E-12 2.1E-16 125.6 6.7 130 17-179 403-533 (549)
44 1v5e_A Pyruvate oxidase; oxido 99.2 2E-11 6.7E-16 122.9 8.9 129 17-177 410-541 (590)
45 2wvg_A PDC, pyruvate decarboxy 99.2 2E-11 6.8E-16 122.2 7.9 125 17-178 410-544 (568)
46 2vbf_A Branched-chain alpha-ke 99.2 4E-11 1.4E-15 120.1 10.0 126 17-178 422-554 (570)
47 2x7j_A 2-succinyl-5-enolpyruvy 99.1 3.1E-11 1E-15 121.8 5.7 129 19-178 454-583 (604)
48 2c31_A Oxalyl-COA decarboxylas 99.0 1.5E-10 5E-15 116.0 6.5 126 18-178 424-550 (568)
49 2q28_A Oxalyl-COA decarboxylas 99.0 1.9E-10 6.4E-15 115.0 7.2 127 18-178 419-547 (564)
50 3hww_A 2-succinyl-5-enolpyruvy 99.0 4.8E-10 1.6E-14 112.0 6.6 125 19-177 416-541 (556)
51 3lq1_A 2-succinyl-5-enolpyruvy 98.9 8E-10 2.7E-14 110.9 6.4 128 19-178 433-563 (578)
52 1yd7_A 2-keto acid:ferredoxin 98.2 9.2E-07 3.1E-11 84.8 4.5 96 211-308 63-162 (395)
53 2c42_A Pyruvate-ferredoxin oxi 97.5 0.00022 7.5E-09 77.2 9.4 114 53-175 954-1070(1231)
54 2c42_A Pyruvate-ferredoxin oxi 97.1 0.0014 5E-08 70.9 9.8 93 213-308 54-147 (1231)
55 1qs0_B 2-oxoisovalerate dehydr 73.2 11 0.00036 34.5 8.1 94 41-173 70-175 (338)
56 3mos_A Transketolase, TK; thia 61.0 45 0.0015 33.1 10.4 99 41-170 369-469 (616)
57 2ozl_B PDHE1-B, pyruvate dehyd 58.4 40 0.0014 30.8 8.8 92 41-172 80-184 (341)
58 1ik6_A Pyruvate dehydrogenase; 57.8 31 0.0011 31.9 8.1 92 41-171 116-219 (369)
59 2bfd_B 2-oxoisovalerate dehydr 56.4 25 0.00085 32.1 7.1 36 132-172 154-190 (342)
60 2o1s_A 1-deoxy-D-xylulose-5-ph 52.4 64 0.0022 31.9 9.8 97 43-171 377-476 (621)
61 1v5e_A Pyruvate oxidase; oxido 50.6 29 0.001 34.0 6.9 85 218-306 48-136 (590)
62 2r8o_A Transketolase 1, TK 1; 48.2 1.7E+02 0.006 29.1 12.3 122 6-171 392-518 (669)
63 2iht_A Carboxyethylarginine sy 46.3 63 0.0021 31.4 8.5 84 218-303 53-140 (573)
64 1w85_B Pyruvate dehydrogenase 44.1 72 0.0025 28.6 8.0 90 41-171 68-171 (324)
65 1ozh_A ALS, acetolactate synth 43.7 56 0.0019 31.7 7.7 87 214-302 50-138 (566)
66 2uz1_A Benzaldehyde lyase; thi 43.7 67 0.0023 31.1 8.3 86 214-302 43-132 (563)
67 1ybh_A Acetolactate synthase, 39.7 81 0.0028 30.7 8.2 82 218-302 55-140 (590)
68 2e6k_A Transketolase; structur 39.1 1.4E+02 0.005 29.6 10.0 77 68-171 435-513 (651)
69 2o1x_A 1-deoxy-D-xylulose-5-ph 37.7 92 0.0031 30.8 8.3 99 41-172 378-479 (629)
70 2j32_A Caspase-3; Pro-caspase3 35.3 99 0.0034 26.8 7.2 32 129-161 47-78 (250)
71 1t9b_A Acetolactate synthase, 35.1 99 0.0034 30.9 8.1 85 214-302 122-210 (677)
72 2pgn_A Cyclohexane-1,2-dione h 35.1 86 0.0029 30.6 7.5 86 214-302 45-133 (589)
73 2vbi_A Pyruvate decarboxylase; 34.3 1.6E+02 0.0054 28.4 9.3 83 218-302 46-138 (566)
74 2pan_A Glyoxylate carboligase; 33.4 1.2E+02 0.0043 29.6 8.4 84 217-302 69-156 (616)
75 1m72_A Caspase-1; caspase, cys 33.4 1E+02 0.0036 27.1 7.1 32 129-161 62-93 (272)
76 2wvg_A PDC, pyruvate decarboxy 33.2 1.8E+02 0.0061 28.0 9.5 86 214-302 43-138 (568)
77 1itz_A Transketolase; calvin c 33.0 1.8E+02 0.0063 29.0 9.6 114 14-171 413-531 (675)
78 1umd_B E1-beta, 2-OXO acid deh 32.9 2.2E+02 0.0074 25.4 9.4 30 136-170 142-171 (324)
79 3eya_A Pyruvate dehydrogenase 32.5 1.3E+02 0.0045 28.9 8.3 82 218-302 46-131 (549)
80 3sir_A Caspase; hydrolase; 2.6 28.9 1.2E+02 0.004 26.5 6.6 31 129-160 50-80 (259)
81 2nxw_A Phenyl-3-pyruvate decar 28.4 2.8E+02 0.0095 26.7 9.9 91 212-303 58-156 (565)
82 4ehd_A Caspase-3; caspase, apo 27.9 1.6E+02 0.0054 26.0 7.4 32 129-161 75-106 (277)
83 1q6z_A BFD, BFDC, benzoylforma 27.7 1E+02 0.0035 29.5 6.5 81 218-300 43-127 (528)
84 4feg_A Pyruvate oxidase; carba 27.5 1.5E+02 0.0052 28.9 7.9 82 218-302 55-140 (603)
85 3hww_A 2-succinyl-5-enolpyruvy 26.7 94 0.0032 30.0 6.1 86 214-303 48-137 (556)
86 2dko_A Caspase-3; low barrier 26.7 2.1E+02 0.0072 22.6 7.2 32 129-161 47-78 (146)
87 3kom_A Transketolase; rossmann 26.1 3E+02 0.01 27.4 9.8 110 17-171 406-519 (663)
88 3l84_A Transketolase; TKT, str 25.6 2.8E+02 0.0096 27.5 9.4 96 41-171 400-497 (632)
89 1f1j_A Caspase-7 protease; cas 25.1 1.1E+02 0.0036 27.6 5.7 32 129-161 100-131 (305)
90 1gpu_A Transketolase; transfer 25.1 2.7E+02 0.0094 27.7 9.3 77 68-171 448-526 (680)
91 3rgo_A Protein-tyrosine phosph 24.6 84 0.0029 24.2 4.4 40 132-173 51-98 (157)
92 1r9j_A Transketolase; domains, 24.2 4.6E+02 0.016 26.1 10.8 77 68-171 440-518 (673)
93 2h54_A Caspase-1; allosteric s 23.2 85 0.0029 25.9 4.3 30 129-159 71-100 (178)
94 2vbf_A Branched-chain alpha-ke 21.7 1.8E+02 0.006 28.1 7.0 86 216-303 66-161 (570)
95 3ibs_A Conserved hypothetical 21.5 97 0.0033 25.2 4.4 35 52-86 111-145 (218)
96 2x7j_A 2-succinyl-5-enolpyruvy 21.0 1.5E+02 0.005 29.0 6.3 85 214-302 71-159 (604)
97 1nw9_B Caspase 9, apoptosis-re 20.6 2E+02 0.0069 25.1 6.6 31 129-160 52-82 (277)
98 2q28_A Oxalyl-COA decarboxylas 20.2 2.5E+02 0.0085 26.9 7.7 87 214-303 47-138 (564)
99 1njh_A Protein YOJF; structura 20.1 1.2E+02 0.0041 23.4 4.2 27 147-177 8-34 (119)
No 1
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=1.8e-59 Score=476.97 Aligned_cols=296 Identities=36% Similarity=0.600 Sum_probs=248.7
Q ss_pred CCCcccCCCC-------CCCCCCCCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHH
Q 041265 1 MRTIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAI 73 (309)
Q Consensus 1 ~~~~r~~~g~-------e~~~d~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAl 73 (309)
++++||++|+ ++.++.+++||+|+|||+|+ |+|+|.|+++.+++|||++|||++++|++||||
T Consensus 97 ~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~Av----------G~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL 166 (629)
T 2o1x_A 97 MADIKKEGGISGFTKVSESEHDAITVGHASTSLTNAL----------GMALARDAQGKDFHVAAVIGDGSLTGGMALAAL 166 (629)
T ss_dssp GGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHH----------HHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH
T ss_pred HhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHH----------HHHHHHHHhCCCCeEEEEEchhhhhccHHHHHH
Confidence 4689999988 44567799999999999999 999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCcchhhhhhhhhcccchhhc--------------------cCCcc----cchhhhHHhhhcCccc
Q 041265 74 NNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQK--------------------FGGQM----HEIDAFSREIEAGSRA 129 (309)
Q Consensus 74 n~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~--------------------~~~~~----~~~~~~~~~~~~~~~~ 129 (309)
|+|+.++.||++|++||+|++.++...... .... .+.++ .+..++.+..+.+.+.
T Consensus 167 ~~A~~~~~pli~IvnnN~~~i~~~~~~~~~-~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~ 245 (629)
T 2o1x_A 167 NTIGDMGRKMLIVLNDNEMSISENVGAMNK-FMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASV 245 (629)
T ss_dssp HHHHHHCCSEEEEEEECSBSSSBCCSSHHH-HC---------------------------------------------CC
T ss_pred HHHHhhCCCEEEEEECCCCCCCCChhHHHH-HHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccc
Confidence 999999999999999999976554320000 0000 00000 0000111111122112
Q ss_pred hhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh------------------------hh
Q 041265 130 CFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK------------------------LQ 185 (309)
Q Consensus 130 ~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e------------------------~~ 185 (309)
.+|++|||+++++|||||++++.++++++++. ++|++||++|+||+||+++| .+
T Consensus 246 ~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~--~~P~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~~~~~~~~~ 323 (629)
T 2o1x_A 246 NPFAAMGVRYVGPVDGHNVQELVWLLERLVDL--DGPTILHIVTTKGKGLSYAEADPIYWHGPAKFDPATGEYVPSSAYS 323 (629)
T ss_dssp CTTGGGTCEEEEEEESSCHHHHHHHHHHHTTS--SSEEEEEEECCTTTTCHHHHHCTTGGGSCCSBCTTTCCBCCCCCCB
T ss_pred hHHHhcCCeEEeeECCcCHHHHHHHHHHHHhc--CCCEEEEEEEecCCCCChhHcCCcccccCccCCcCcCcccccchHH
Confidence 78999999999899999999999999999876 88999999999999998765 15
Q ss_pred HHHHHhhhc-------------ccccCCCCCchhhhhhCCCceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHH
Q 041265 186 QTRLFCKIL-------------DNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCF 252 (309)
Q Consensus 186 ~~~~~~~~l-------------d~dl~~~~~~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~ 252 (309)
|+++|+++| ++|+.+++++.+|+++||+||||+||+|++|+++|+|||+.|++||+.+|++|++|++
T Consensus 324 ~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~~~~F~~~a~ 403 (629)
T 2o1x_A 324 WSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQRAY 403 (629)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCGGGEEECCSCHHHHHHHHHHHHHTTCEEEEEEEHHHHGGGH
T ss_pred HHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhcCcceEeccccHHHHHHHHHHHHHcCCEEEEEecHHHHHHHH
Confidence 899999887 4888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 253 DQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 253 dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
|||++++|++++||+++++++|++|++|+|||+.+|+++||++||++|++|+|+.|+
T Consensus 404 dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~ 460 (629)
T 2o1x_A 404 DQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAEL 460 (629)
T ss_dssp HHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHH
T ss_pred HHHHHHHhhcCCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHH
Confidence 999999999999999999999988889999999999999999999999999999873
No 2
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.9e-59 Score=474.88 Aligned_cols=295 Identities=43% Similarity=0.687 Sum_probs=242.4
Q ss_pred CCCcccCCCC-------CCCCCCCCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHH
Q 041265 1 MRTIRQTCGL-------ENVHDAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAI 73 (309)
Q Consensus 1 ~~~~r~~~g~-------e~~~d~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAl 73 (309)
|+++||++|+ ++.+|.+++||+|+|||+|+ |+|+|.|+++.+.+|||++|||++++|++||||
T Consensus 95 ~~~~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~----------G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL 164 (621)
T 2o1s_A 95 IGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGI----------GIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAM 164 (621)
T ss_dssp GGGTTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHH----------HHHHHHHHHTSCCCEEEEEETTGGGSHHHHHHH
T ss_pred hhcccccCCCCCCCCCCCCCCCccCCcccchHHHHHH----------HHHHHHHHhCCCCeEEEEEchhhhhccHHHHHH
Confidence 4679999998 33456699999999999999 999999999999999999999999999999999
Q ss_pred HHHhhccCcEEEEEeCcchhhhhhhhhcccchh--hccC---------Ccc-----------cchhhhHHhhhcCccchh
Q 041265 74 NNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKK--QKFG---------GQM-----------HEIDAFSREIEAGSRACF 131 (309)
Q Consensus 74 n~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~--~~~~---------~~~-----------~~~~~~~~~~~~~~~~~~ 131 (309)
|+|+.+++||++|++||+|+++++......... ...+ ..+ .+..++.++...+ ..+
T Consensus 165 ~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~p--~~~ 242 (621)
T 2o1s_A 165 NHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMVVP--GTL 242 (621)
T ss_dssp HHHHHHCCSEEEEEEECC--------------------------------------------------------C--HHH
T ss_pred HHHHhhCCCEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccCh--hhH
Confidence 999999999999999999987765531000000 0000 000 0001111111111 478
Q ss_pred hhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh--------------------------hh
Q 041265 132 FEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK--------------------------LQ 185 (309)
Q Consensus 132 f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e--------------------------~~ 185 (309)
|+++||+++++|||||++++.++++++++. ++|++||++|+||+||+++| .+
T Consensus 243 ~ea~G~~~~g~vdG~d~~~l~~al~~A~~~--~gP~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~~~~~~~~~~~ 320 (621)
T 2o1s_A 243 FEELGFNYIGPVDGHDVLGLITTLKNMRDL--KGPQFLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPS 320 (621)
T ss_dssp HHHTTCEEEEEEETTCHHHHHHHHHHHHHS--CSEEEEEEECCCTTCCCCC--------------------------CCB
T ss_pred HHHCCCeEeeeeCCCCHHHHHHHHHHHHHc--CCCEEEEEEEecccCCChhhcCchhccCCCCCCCCcCcccccccchHH
Confidence 999999998889999999999999999987 88999999999999998643 25
Q ss_pred HHHHHhhhc-------------ccccCCCCCchhhhhhCCCceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHH
Q 041265 186 QTRLFCKIL-------------DNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCF 252 (309)
Q Consensus 186 ~~~~~~~~l-------------d~dl~~~~~~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~ 252 (309)
|+++|+++| ++|+.+++++.+|+++||+||+|+||+|++|+++|+|||+.|++||+.+|++|++|++
T Consensus 321 ~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~~~~F~~~a~ 400 (621)
T 2o1s_A 321 YSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQRAY 400 (621)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEEETTGGGGGH
T ss_pred HHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhCCCceEecCcCHHHHHHHHHHHHHCCCEEEEEehHhHHHHHH
Confidence 888998877 4888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 253 DQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 253 dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
|||++++|++++||+++++++|++|++|+|||+.+|+++|+++|||+|++|+|+.|+
T Consensus 401 dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~ 457 (621)
T 2o1s_A 401 DQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENEC 457 (621)
T ss_dssp HHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHH
T ss_pred HHHHHHHHhcCCCEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHH
Confidence 999999999999999999999988889999999999999999999999999999873
No 3
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=9.3e-59 Score=473.77 Aligned_cols=274 Identities=14% Similarity=0.173 Sum_probs=234.5
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhc-------------CCCCeEEEEE
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLL-------------GKNNHVISVI 59 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~-------------~~~~~v~~~~ 59 (309)
|++|||+||+ ++||+. +++|++|+|||+|+ |+|+|.|++ +.+++|||++
T Consensus 106 l~~fr~~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~Av----------G~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~ 175 (700)
T 3rim_A 106 IESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAV----------GMAMASRYERGLFDPDAEPGASPFDHYIYVIA 175 (700)
T ss_dssp HTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHH----------HHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEE
T ss_pred HHHhhcCCCCCCCCCCCCCCCCccccccccCCcchHHH----------HHHHHHHHHhhhccccccccccCCCCeEEEEE
Confidence 4789999998 777663 89999999999999 999999985 5678999999
Q ss_pred eCCccccchHHHHHHHHhhccC-cEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCe
Q 041265 60 VEGATIARMSYEAINNAGVLNK-ALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLY 138 (309)
Q Consensus 60 GDG~l~eG~~~EAln~A~~~~~-~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~ 138 (309)
|||+++||++|||+|+|+.+++ ||++|+|||+|++..+.. .. ..++...+|++|||+
T Consensus 176 GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~-------~~---------------~~~~~~~~~~a~G~~ 233 (700)
T 3rim_A 176 SDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTN-------IA---------------LCEDTAARYRAYGWH 233 (700)
T ss_dssp EHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGG-------GT---------------CCCCHHHHHHHHTCE
T ss_pred CCcccccChHHHHHHHHHHcCCCcEEEEEECCCcccccchh-------hc---------------cchhHHHHHHHcCCe
Confidence 9999999999999999999995 699999999886543332 00 122335689999999
Q ss_pred EEecC-CCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh---------------------------h------
Q 041265 139 YIGPV-DGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK---------------------------L------ 184 (309)
Q Consensus 139 ~~~~v-DG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e---------------------------~------ 184 (309)
++ .| ||||+++|+++++++++. .++|++|+++|+||+|++++| +
T Consensus 234 ~~-~V~DG~D~~al~~Al~~A~~~-~~~P~lI~~~T~kG~G~~~~e~~~~~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~ 311 (700)
T 3rim_A 234 VQ-EVEGGENVVGIEEAIANAQAV-TDRPSFIALRTVIGYPAPNLMDTGKAHGAALGDDEVAAVKKIVGFDPDKTFQVRE 311 (700)
T ss_dssp EE-EEECTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTTSHHHHHSCCCHHHHHHHHHHHTCCTTCSSCCCH
T ss_pred EE-EECCCCCHHHHHHHHHHHHHc-CCCCEEEEEEEEeeecCCccCCCccccCCCCCHHHHHHHHHHcCCCcccCccCCH
Confidence 99 78 999999999999999873 288999999999999988644 0
Q ss_pred ------------------h----------------------------------------------HHHHHhhhc------
Q 041265 185 ------------------Q----------------------------------------------QTRLFCKIL------ 194 (309)
Q Consensus 185 ------------------~----------------------------------------------~~~~~~~~l------ 194 (309)
. ++++|+++|
T Consensus 312 ~v~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~atr~a~~~~L~~l~~~ 391 (700)
T 3rim_A 312 DVLTHTRGLVARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLPDGWDADLPHWEPGSKALATRAASGAVLSALGPK 391 (700)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTTTSSCCCCCTTSSCEEHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhChHHHHHHHHHhccCCCcchhhhcccccccccchHHHHHHHHHHHHHHhh
Confidence 0 113444444
Q ss_pred -------ccccCCCCC-----chhhhhhC------C----CceeeccchHHHHHHHHHHHhhC-CCeeEEeecHHHHHhH
Q 041265 195 -------DNRMGGGTG-----LNLFQKHF------P----IRCFDVGIAEQHAVTFAAGLAAE-GLKPFCAIYSSFLQRC 251 (309)
Q Consensus 195 -------d~dl~~~~~-----~~~~~~~~------p----~r~~~~gIaE~~~vg~a~GlA~~-G~~pi~~~~~~F~~ra 251 (309)
++|++.+++ +.+|+++| | +|+||+||+|++|+++|+|||+. |++||+.+|+.|+.++
T Consensus 392 ~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA~~gG~~Pv~~tF~~F~d~~ 471 (700)
T 3rim_A 392 LPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILSGIVLHGPTRAYGGTFLQFSDYM 471 (700)
T ss_dssp CTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGGG
T ss_pred CCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccHHHHHHHHHHHHHcCCCEEEEEecHHHHHHH
Confidence 478876655 46888888 8 59999999999999999999998 9999999999999999
Q ss_pred HHHHHHhhhhCCCCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 252 FDQVAHDVDLQKLPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 252 ~dqi~~~~a~~~~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
.+|||. ++++++||+++++++|+ +|+||+|||+++|+++||++|||+|++|+|+.|+
T Consensus 472 ~~~ir~-~al~~lpvv~v~thdg~gvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~e~ 529 (700)
T 3rim_A 472 RPAVRL-AALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSVVRPADANET 529 (700)
T ss_dssp HHHHHH-HHHHTCCCEEEEECCSGGGCTTCTTTSCSSHHHHHHTSTTCEEECCSSHHHH
T ss_pred HHHHHH-hcCCCCCEEEEEeCCCcccCCCCCccCChhHHHHHhcCCCCEEEeCCCHHHH
Confidence 999987 68999999999999888 7999999999999999999999999999999773
No 4
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=1.3e-58 Score=468.93 Aligned_cols=273 Identities=19% Similarity=0.239 Sum_probs=231.7
Q ss_pred CCCcccCCCC-CCCCC------CCCcCCchhhHhhHhhcccccccchhhHhHhHhcCC-------CCeEEEEEeCCcccc
Q 041265 1 MRTIRQTCGL-ENVHD------AFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGK-------NNHVISVIVEGATIA 66 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d------~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~-------~~~v~~~~GDG~l~e 66 (309)
|++|||+||+ ++||+ .+++|++|+|||+|+ |+|+|.++++. +++|||++|||+++|
T Consensus 88 l~~~r~~~s~~~ghp~~~~~g~~~~tG~lG~gl~~Av----------G~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~e 157 (632)
T 3l84_A 88 LKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAV----------GFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQE 157 (632)
T ss_dssp HTTTTCTTCSSCSSCCTTSTTCCSCCCSTTHHHHHHH----------HHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHS
T ss_pred HHHHhcCCCCCCCCCCCCCCCcccCCcchhhHHHHHH----------HHHHHHHhhccccccCCCCCeEEEEECCcchhh
Confidence 4789999999 66665 389999999999999 99999998754 788999999999999
Q ss_pred chHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCC
Q 041265 67 RMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDG 145 (309)
Q Consensus 67 G~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG 145 (309)
|++||||++|+.++ +||++|.+||+|++..+.. . ...++...+|++|||+++ +|||
T Consensus 158 G~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~-------~---------------~~~~d~~~~~~a~G~~~~-~vdG 214 (632)
T 3l84_A 158 GISYEACSLAGLHKLDNFILIYDSNNISIEGDVG-------L---------------AFNENVKMRFEAQGFEVL-SING 214 (632)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGG-------G---------------TCCCCHHHHHHHTTCEEE-EEET
T ss_pred ccHHHHHHHHHHcCCCcEEEEEECCCcccccchh-------h---------------hcChhHHHHHHHcCCeEE-EEee
Confidence 99999999999999 5699999999886543322 0 012334668999999999 9999
Q ss_pred CCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh------------------------------------------
Q 041265 146 HNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK------------------------------------------ 183 (309)
Q Consensus 146 ~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e------------------------------------------ 183 (309)
||+++|.++++++++. ++|++||++|+||+|++++|
T Consensus 215 hd~~~l~~al~~A~~~--~~P~lI~v~T~kG~G~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~~~f~v~~~~~~~~~~ 292 (632)
T 3l84_A 215 HDYEEINKALEQAKKS--TKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFES 292 (632)
T ss_dssp TCHHHHHHHHHHHHTC--SSCEEEEEECCTTTTCGGGTTCGGGSSSCCCHHHHHHHHHHHTCCTTCCSCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC--CCCEEEEEeeEeeecCCCCCCcccccCCCCCHHHHHHHHHHhCCCCCCCccCChHHHHHHHH
Confidence 9999999999999985 89999999999999998643
Q ss_pred ---------hhHHHHHh------------------------------------hhc-------------ccccCCCCCch
Q 041265 184 ---------LQQTRLFC------------------------------------KIL-------------DNRMGGGTGLN 205 (309)
Q Consensus 184 ---------~~~~~~~~------------------------------------~~l-------------d~dl~~~~~~~ 205 (309)
.+|.++|. +.| ++|++++.++.
T Consensus 293 ~~~~g~~~~~~w~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~a~r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~ 372 (632)
T 3l84_A 293 AVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTE 372 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHSCCSTTCCCCCCTTCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCC
T ss_pred HHhhcchhHHHHHHHhhcccCchhhhhhCccchhhhcchhccccchHHHHHHHHHHHHHHhhCCCEEEEecccCCccCcc
Confidence 02223332 222 36776655442
Q ss_pred -hhhhhC-CCceeeccchHHHHHHHHHHHhhC-CCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc-cCCCCC
Q 041265 206 -LFQKHF-PIRCFDVGIAEQHAVTFAAGLAAE-GLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL-VGADGP 281 (309)
Q Consensus 206 -~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~-G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~-~g~~G~ 281 (309)
.+.++| |+||||+||+|++|+++|+|||+. |++||+.+|++|++|+++||++ ++++++||+++++++|+ +|++|+
T Consensus 373 ~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~f~~F~~~~~~~ir~-~a~~~~pv~~~~t~~g~g~G~dG~ 451 (632)
T 3l84_A 373 LHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFSATFFIFSEYLKPAARI-AALMKIKHFFIFTHDSIGVGEDGP 451 (632)
T ss_dssp CTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHHHHHHHHH-HHHHTCCCEEEEECCSGGGCTTCG
T ss_pred hhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHHHH-HhccCCCEEEEEECCCcCCCCCCC
Confidence 233678 999999999999999999999999 9999999999999999999987 58999999999998888 799999
Q ss_pred CCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 282 THCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 282 tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
|||+++|+++||++|||+|++|+|+.|+
T Consensus 452 THq~~ed~a~lr~iP~l~V~~P~d~~e~ 479 (632)
T 3l84_A 452 THQPIEQLSTFRAMPNFLTFRPADGVEN 479 (632)
T ss_dssp GGSCSSHHHHHHHSSSCEEECCSSHHHH
T ss_pred CCCCHhHHHHHhcCCCCEEEecCCHHHH
Confidence 9999999999999999999999998763
No 5
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=1.7e-57 Score=463.30 Aligned_cols=274 Identities=19% Similarity=0.255 Sum_probs=228.6
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhcCC----------CCeEEEEEeCC
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGK----------NNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~----------~~~v~~~~GDG 62 (309)
|++|||+||+ ++||+. +++|++|+|||+|+ |+|+|.++++. +++|||++|||
T Consensus 89 l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~Av----------G~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG 158 (663)
T 3kom_A 89 IKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAV----------GMALGEKLLSDRYNTPDLKVIDHHTYVFLGDG 158 (663)
T ss_dssp HTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHH----------HHHHHHHHHHHHHCBTTBCSCCCCEEEEECHH
T ss_pred HHhhccCCCCCCCCCCCCCCCCcccCCcchhhHHHHHH----------HHHHhHHhhcccccccccccCCCeEEEEECch
Confidence 4789999999 666653 79999999999999 99999998764 68899999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
+++||++||||++|+.++ ++|++|+|||+|++..+.. . ...++...+|++|||++++
T Consensus 159 ~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~-------~---------------~~~~d~~~~~~a~G~~~~~ 216 (663)
T 3kom_A 159 CLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTK-------G---------------WFSDNTPERFRAYGWHVIE 216 (663)
T ss_dssp HHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----CGG-------G---------------TCCCCHHHHHHHTTCEEEE
T ss_pred hhhhchHHHHHHHHHHhCCCeEEEEEECCCcccccchh-------h---------------hcchhHHHHHHHCCCeEEE
Confidence 999999999999999999 4699999999886543332 0 0123346689999999998
Q ss_pred cCCCCCHHHHHHHHHHhhc-CCCCCcEEEEEEeeeccCCchhh-------------------------------------
Q 041265 142 PVDGHNLEDLAYVLKQVKA-IPDPGAVLIHVITEKEKAMLPLK------------------------------------- 183 (309)
Q Consensus 142 ~vDG~D~~~l~~al~~a~~-~~~~~P~~I~~~T~kg~G~~~~e------------------------------------- 183 (309)
+|||||+++|.++++++++ . ++|++||++|+||+|++++|
T Consensus 217 ~vdG~d~~~l~~al~~A~~~~--~~P~lI~~~T~kg~G~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~pf~~~~~~~~ 294 (663)
T 3kom_A 217 NVDGHDFVAIEKAINEAHSQQ--QKPTLICCKTVIGFGSPEKAGTASVHGSPLSDQERASAAKELNWDYQAFEIPQDVYK 294 (663)
T ss_dssp EEETTCHHHHHHHHHHHHHCS--SSCEEEEEECCTTTTCTTTTTCSSTTSSCCCHHHHHHHHHHTTCCCCTTCCCHHHHH
T ss_pred EEcCCCHHHHHHHHHHHHhcC--CCCEEEEEecccccccCCCCCCccccCCCCCHHHHHHHHHHcCCCCCCccCChhHHH
Confidence 8999999999999999997 4 88999999999999987643
Q ss_pred ------------hhHHHHH------------------------------------------------hhhc---------
Q 041265 184 ------------LQQTRLF------------------------------------------------CKIL--------- 194 (309)
Q Consensus 184 ------------~~~~~~~------------------------------------------------~~~l--------- 194 (309)
.+|.+.| +++|
T Consensus 295 ~~~~~~~g~~~~~~w~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~a~~~aL~~~~~~~p~ 374 (663)
T 3kom_A 295 YWDAREKGQALEANWQGQRNLFKDSPKFDEFERVLSKELPVGLESAINDYIASQLSNPVKVATRKASQMVLEVLCKNMPE 374 (663)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHTCCCTTHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcchhhHHHHHHHHHhhcchHHHHHHHHhccCCCcchhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHhhCCC
Confidence 0111111 1123
Q ss_pred ----ccccCCCCCc-----hhhh-hhCCCceeeccchHHHHHHHHHHHhhC-CCeeEEeecHHHHHhHHHHHHHhhhhCC
Q 041265 195 ----DNRMGGGTGL-----NLFQ-KHFPIRCFDVGIAEQHAVTFAAGLAAE-GLKPFCAIYSSFLQRCFDQVAHDVDLQK 263 (309)
Q Consensus 195 ----d~dl~~~~~~-----~~~~-~~~p~r~~~~gIaE~~~vg~a~GlA~~-G~~pi~~~~~~F~~ra~dqi~~~~a~~~ 263 (309)
++|++++.++ .+|. ++||+|+||+||+|++|+++|+|||+. |++||+.+|++|++++++||++ +++++
T Consensus 375 vv~~~aDl~~s~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~tf~~F~~~~~~~ir~-~a~~~ 453 (663)
T 3kom_A 375 MFGGSADLTGSNNTNWSGSVWLNNTQEGANYLSYGVREFGMAAIMNGLSLYGGIKPYGGTFLVFSDYSRNAIRM-SALMK 453 (663)
T ss_dssp EEEEECCC--CCSCCCTTCCBTTTCSTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHHHHHHHHH-HHHTT
T ss_pred EEEEecccCCCCCcccccccccccccCCCCeEecCccHHHHHHHHHHHHHcCCCEEEEEehHHHHHHHHHHHHH-HHhcC
Confidence 4788776654 3674 899999999999999999999999998 9999999999999999999987 58999
Q ss_pred CCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 264 LPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 264 ~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
+||+++++++|+ .|++|+|||+++|+++||++|||+|++|+|+.|+
T Consensus 454 lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~ 500 (663)
T 3kom_A 454 QPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIET 500 (663)
T ss_dssp CCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHH
T ss_pred CCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHH
Confidence 999999988887 7899999999999999999999999999998773
No 6
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=2.8e-57 Score=463.93 Aligned_cols=274 Identities=20% Similarity=0.250 Sum_probs=223.5
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhcCC----------CCeEEEEEeCC
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGK----------NNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~----------~~~v~~~~GDG 62 (309)
|++|||+||+ ++||+. +++|++|+|||+|+ |+|+|.++++. +++|||++|||
T Consensus 128 l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~Av----------G~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG 197 (711)
T 3uk1_A 128 LKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAV----------GMALGEALLAAEFNRDDAKIVDHHTYVFLGDG 197 (711)
T ss_dssp HHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHH----------HHHHHHHHHHHHHCBTTBCCCCCCEEEEECHH
T ss_pred HHhhccccCCCCCCCCCCCCCCcccCccchhhHHHHHH----------HHHHHHHhhcccccccccccCCCeEEEEECCc
Confidence 4689999999 666643 79999999999999 99999998763 78899999999
Q ss_pred ccccchHHHHHHHHhhccC-cEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLNK-ALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~~-~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
+++||++||||++|+.+++ +|++|+|||+|++..+.. .. ..++...+|++|||++++
T Consensus 198 ~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~-------~~---------------~~~d~~~~~~a~G~~~~~ 255 (711)
T 3uk1_A 198 CLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVV-------NW---------------FHDDTPKRFEAYGWNVIP 255 (711)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGG-------GT---------------CCCCHHHHHHHTTCEEEE
T ss_pred chhhccHHHHHHHHHHhCCCcEEEEEECCCcccccchh-------hh---------------cCCCHHHHHHHcCCcEEE
Confidence 9999999999999999995 699999999886543322 00 123346689999999995
Q ss_pred cCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh--------------------------------------
Q 041265 142 PVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK-------------------------------------- 183 (309)
Q Consensus 142 ~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e-------------------------------------- 183 (309)
+|||||+++|.++++++++. ++|++||++|+||+|++..+
T Consensus 256 ~vdG~d~~~l~~Al~~A~~~--~~P~lI~v~T~kG~G~~~~e~~~~~Hg~~l~~e~~~~~~~~l~~~~~pF~~~~~~~~~ 333 (711)
T 3uk1_A 256 NVNGHDVDAIDAAIAKAKRS--DKPSLICCKTRIGNGAATKAGGHDVHGAPLGADEIAKTREALGWTWAPFVIPQEVYAA 333 (711)
T ss_dssp EEETTCHHHHHHHHHHHTTC--SSCEEEEEEC--------------------CHHHHHHHHHHHTCCCCTTCCCHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHhC--CCCEEEEEccccccCCCCCCCcccccCCCCCHHHHHHHHHHhCCCCCCccCChHHHHH
Confidence 49999999999999999986 88999999999999987532
Q ss_pred -----------hhHHHH--------------------------------------------------Hhhhc--------
Q 041265 184 -----------LQQTRL--------------------------------------------------FCKIL-------- 194 (309)
Q Consensus 184 -----------~~~~~~--------------------------------------------------~~~~l-------- 194 (309)
.+|.+. ++++|
T Consensus 334 ~~~~~~g~~~~~~w~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~A~~~~L~~l~~~~p 413 (711)
T 3uk1_A 334 WDAKEAGKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVAGANERGETVATRKASQQTIEGLAAVLP 413 (711)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCT
T ss_pred HHHHhccchhHHHHHHHHHHHHhhChhhHHHHHHhhccCCCchHHHHhhHhhhhhhccccchhHHHHHHHHHHHHHhhCC
Confidence 011111 11222
Q ss_pred -----ccccCCCCCc-----hhhhhh---CC---CceeeccchHHHHHHHHHHHhh-CCCeeEEeecHHHHHhHHHHHHH
Q 041265 195 -----DNRMGGGTGL-----NLFQKH---FP---IRCFDVGIAEQHAVTFAAGLAA-EGLKPFCAIYSSFLQRCFDQVAH 257 (309)
Q Consensus 195 -----d~dl~~~~~~-----~~~~~~---~p---~r~~~~gIaE~~~vg~a~GlA~-~G~~pi~~~~~~F~~ra~dqi~~ 257 (309)
++|++++.++ .+|+++ || +||||+||+|++|+++|+|||+ .|++||+.+|++|++|+++|||+
T Consensus 414 ~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~p~~~~R~~d~GIaE~~mv~~AaGlA~~~G~~Pv~~~f~~F~~~~~~~ir~ 493 (711)
T 3uk1_A 414 ELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAINGLVLHGGYKPFGGTFLTFSDYSRNALRV 493 (711)
T ss_dssp TEEEEESSCHHHHTCCCTTCCBCEECSSSSSEECCSEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHHHHHHHHH
T ss_pred CEEEEeccccCcCCcccccchhhhhhhccCCCCCCcEEEeCccHHHHHHHHHHHHHcCCCEEEEEEhHHHHHHHHHHHHH
Confidence 3777655443 578888 99 9999999999999999999999 59999999999999999999998
Q ss_pred hhhhCCCCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 258 DVDLQKLPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 258 ~~a~~~~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
++++++||+++++++|+ .|+||+|||+++|+++||++|||+|++|+|+.|+
T Consensus 494 -~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pad~~E~ 545 (711)
T 3uk1_A 494 -AALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVET 545 (711)
T ss_dssp -HHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHH
T ss_pred -hhhcCCCEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecCCHHHH
Confidence 58999999999999888 7999999999999999999999999999999873
No 7
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=4.1e-57 Score=458.01 Aligned_cols=271 Identities=23% Similarity=0.359 Sum_probs=232.8
Q ss_pred CCCcccCC-CCCCCCCC------CCcCCchhhHhhHhhcccccccchhhHhHhHhcCC-CCeEEEEEeCCccccchHHHH
Q 041265 1 MRTIRQTC-GLENVHDA------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGK-NNHVISVIVEGATIARMSYEA 72 (309)
Q Consensus 1 ~~~~r~~~-g~e~~~d~------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~-~~~v~~~~GDG~l~eG~~~EA 72 (309)
|++|||+| ++++||+. +++|++|+|||+|+ |+|+|.++.+. +++|||++|||+++||++|||
T Consensus 95 l~~~r~~~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~----------G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Ea 164 (616)
T 3mos_A 95 LLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAAC----------GMAYTGKYFDKASYRVYCLLGDGELSEGSVWEA 164 (616)
T ss_dssp GGGTTCTTCSCCSSCCTTSTTCSSCCCSTTCHHHHHH----------HHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHH
T ss_pred HHHhccCCCCCCCCCCCCCCcccccccccCCccHHHH----------HHHHHHHHhCCCCCEEEEEECccccccCcHHHH
Confidence 56899999 55665542 89999999999999 99999987666 588999999999999999999
Q ss_pred HHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHH
Q 041265 73 INNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDL 151 (309)
Q Consensus 73 ln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l 151 (309)
||+|+.++ ++|++|.+||+|++..+.. .....+++ ..+|++|||+++ +|||||+++|
T Consensus 165 l~~A~~~~l~~livi~nnN~~~i~~~~~------------~~~~~~~~---------~~~~~a~G~~~~-~VdG~d~~~l 222 (616)
T 3mos_A 165 MAFASIYKLDNLVAILDINRLGQSDPAP------------LQHQMDIY---------QKRCEAFGWHAI-IVDGHSVEEL 222 (616)
T ss_dssp HHHHHHTTCTTEEEEEEECSBCSSSBCT------------TTTCHHHH---------HHHHHHTTCEEE-EEETTCHHHH
T ss_pred HHHHHHcCCCcEEEEEECCCCCCcCCcc------------cccChHHH---------HHHHHHcCCeEE-EEcCCCHHHH
Confidence 99999999 5688888888886533221 00111222 457999999999 9999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEEeeeccCCchhh---------h--------------------------------------
Q 041265 152 AYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK---------L-------------------------------------- 184 (309)
Q Consensus 152 ~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e---------~-------------------------------------- 184 (309)
.++++++ . ++|++||++|+||+||+..| .
T Consensus 223 ~~al~~~--~--~~P~lI~v~T~kg~G~~~~e~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (616)
T 3mos_A 223 CKAFGQA--K--HQPTAIIAKTFKGRGITGVEDKESWHGKPLPKNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIAN 298 (616)
T ss_dssp HHHHHSC--C--SSCEEEEEECCTTTTSTTTTTCSSCTTCCCCHHHHHHHHHHHHHTCCCCCCCCCBCCCCCCCCCCCSC
T ss_pred HHHHHhc--C--CCCEEEEEEEecccccccccCchhhcCCCCCHHHHHHHHHHHHHHHHhhhhhCcCccchhhhhhhhhc
Confidence 9999765 3 78999999999999997654 0
Q ss_pred -------hH--------HHHHhhhc-------------ccccCCCCCchhhhhhCCCceeeccchHHHHHHHHHHHhhCC
Q 041265 185 -------QQ--------TRLFCKIL-------------DNRMGGGTGLNLFQKHFPIRCFDVGIAEQHAVTFAAGLAAEG 236 (309)
Q Consensus 185 -------~~--------~~~~~~~l-------------d~dl~~~~~~~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~G 236 (309)
+| +++|+++| ++|+++++++..|+++||+||||+||+|++|+++|+|||+.|
T Consensus 299 ~~~~~~~~~~~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~~~~~~~~~p~R~~d~gIaE~~~v~~a~G~A~~G 378 (616)
T 3mos_A 299 IRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRN 378 (616)
T ss_dssp CCCSSCCCCCTTCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHSHHHHHHHCGGGEEECCSCHHHHHHHHHHHHGGG
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcchhhHHHhCCCCeEEcCccHHHHHHHHHHHHHcC
Confidence 11 26777776 488888777899999999999999999999999999999999
Q ss_pred C-eeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCC
Q 041265 237 L-KPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVL 308 (309)
Q Consensus 237 ~-~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e 308 (309)
+ +|++.+|++|++|++|||++. +++++||+++++++|+ .|++|+|||+.+|+++|+++||++|++|+|+.|
T Consensus 379 ~~~~~~~~f~~Fl~~a~dqi~~~-a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e 451 (616)
T 3mos_A 379 RTVPFCSTFAAFFTRAFDQIRMA-AISESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVA 451 (616)
T ss_dssp CCEEEEEEEGGGGGGGHHHHHHH-HHTTCCEEEEEESBSGGGCTTCGGGCBSSHHHHHHTSTTEEEECCCSHHH
T ss_pred CCCEEEEehHHHHHHHHHHHHHH-HHhCCCeEEEEECCCccccCCCCcccCHHHHHHhcCCCCCEEEecCCHHH
Confidence 7 788899999999999999997 7999999999999999 799999999999999999999999999999865
No 8
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=1.2e-56 Score=458.22 Aligned_cols=274 Identities=19% Similarity=0.213 Sum_probs=226.6
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhcCC----------CCeEEEEEeCC
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGK----------NNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~----------~~~v~~~~GDG 62 (309)
|++|||+||+ ++||+. +++|++|+|||+|+ |+|+|.++++. +++|||++|||
T Consensus 113 l~~~rq~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~Av----------G~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG 182 (690)
T 3m49_A 113 LKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAV----------GMAMAERHLAAKYNRDAYNIVDHYTYAICGDG 182 (690)
T ss_dssp HTTTTCTTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHH----------HHHHHHHHHHHHHCBTTBCCSCCCEEEEECHH
T ss_pred HHhhccCCCCCCCCCCCCCCCccccCCccccccHHHHH----------HHHHHHHHhhccccccccccCCCeEEEEECch
Confidence 5789999999 566553 89999999999999 99999997653 78899999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
+++||++||||++|+.++ ++|++|.+||+|++..+.. . ...++...+|++|||++++
T Consensus 183 ~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~---------------~-------~~~~d~~~~~~a~G~~~~~ 240 (690)
T 3m49_A 183 DLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLN---------------R-------SFSESVEDRYKAYGWQVIR 240 (690)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGG---------------G-------TCCCCHHHHHHHHTCEEEE
T ss_pred hhhhccHHHHHHHHHHhCCCeEEEEEECCCeecccchh---------------h-------ccchhHHHHHHHcCCcEEE
Confidence 999999999999999999 5799998998886543322 0 0123345689999999995
Q ss_pred cCCCCCHHHHHHHHHHhhc-CCCCCcEEEEEEeeeccCCchhh-------------------------------------
Q 041265 142 PVDGHNLEDLAYVLKQVKA-IPDPGAVLIHVITEKEKAMLPLK------------------------------------- 183 (309)
Q Consensus 142 ~vDG~D~~~l~~al~~a~~-~~~~~P~~I~~~T~kg~G~~~~e------------------------------------- 183 (309)
.+||||+++|.++++++++ . ++|++||++|+||+|++..+
T Consensus 241 v~DG~d~~~l~~Al~~a~~~~--~~P~lI~v~T~kG~G~~~~~~~~~~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~ 318 (690)
T 3m49_A 241 VEDGNDIEAIAKAIEEAKADE--KRPTLIEVRTTIGFGSPNKSGKSASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVY 318 (690)
T ss_dssp ESCTTCHHHHHHHHHHHHHCC--SSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHH
T ss_pred EecCCCHHHHHHHHHHHHhcC--CCCEEEEEEeecccccCcccCcccccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHH
Confidence 4599999999999999997 4 88999999999999987422
Q ss_pred ---------------hhHHHH---------------------------------------------Hhhhc---------
Q 041265 184 ---------------LQQTRL---------------------------------------------FCKIL--------- 194 (309)
Q Consensus 184 ---------------~~~~~~---------------------------------------------~~~~l--------- 194 (309)
.+|.+. ++++|
T Consensus 319 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~lp~~~~~~~~~~~~~~~~a~R~a~g~~L~~~~~~~p~ 398 (690)
T 3m49_A 319 ENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGLLPEGWEQNLPTYELGSKAATRNSSGAVINAIAESVPS 398 (690)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCTTGGGGCCCCCTTCEEEHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHHHHhcccCchhhhhhccccccccchHHHHHHHHHHHHHHhhCCC
Confidence 012221 23233
Q ss_pred ----ccccCCCCCc-----hhhhhhC-CCceeeccchHHHHHHHHHHHhhC-CCeeEEeecHHHHHhHHHHHHHhhhhCC
Q 041265 195 ----DNRMGGGTGL-----NLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAE-GLKPFCAIYSSFLQRCFDQVAHDVDLQK 263 (309)
Q Consensus 195 ----d~dl~~~~~~-----~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~-G~~pi~~~~~~F~~ra~dqi~~~~a~~~ 263 (309)
++|++++.++ ++|.+++ |+|+||+||+|++|+++|+|||+. |++||+.+|+.|+..+..|||+ +++++
T Consensus 399 vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A~GlA~~gG~~P~~~tf~~Fs~f~~~air~-~al~~ 477 (690)
T 3m49_A 399 FFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMNGIALHGGLKTYGGTFFVFSDYLRPAIRL-AALMQ 477 (690)
T ss_dssp EEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHHHH-HHHHT
T ss_pred EEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHHHH-HHhcC
Confidence 3677655443 4777776 899999999999999999999998 8999999887776555567876 58999
Q ss_pred CCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 264 LPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 264 ~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
+||+++++++|+ +|+||+|||+++|+++||+||||+|++|+|+.|+
T Consensus 478 lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~E~ 524 (690)
T 3m49_A 478 LPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGNES 524 (690)
T ss_dssp CCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCSSHHHH
T ss_pred CCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeCCHHHH
Confidence 999999999999 7999999999999999999999999999999773
No 9
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=5.3e-55 Score=446.50 Aligned_cols=275 Identities=17% Similarity=0.200 Sum_probs=231.0
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhcC----------CCCeEEEEEeCC
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLG----------KNNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~----------~~~~v~~~~GDG 62 (309)
|.+|||+||+ ++||+. +++|++|+|+|+|+ |+|+|.|+++ .+++|||++|||
T Consensus 89 l~~~r~~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~Av----------G~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG 158 (673)
T 1r9j_A 89 LKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAV----------GLAIAEAHLAATFNRPGYNIVDHYTYVYCGDG 158 (673)
T ss_dssp HHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHH----------HHHHHHHHHHHHHCBTTBCCCCCCEEEEECHH
T ss_pred HHhhccCCCCCCCCCCCCCCCCeeeccCCCCCcHHHHH----------HHHHHHHHhhhhccccccCCCCCEEEEEECcc
Confidence 4689999999 676663 89999999999999 9999999775 578899999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
+++||++|||+++|+.++ +||++|+|||+|++..+.. .. +.++...+|++|||++++
T Consensus 159 ~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~-------~~---------------~~~d~~~~~~a~G~~~~~ 216 (673)
T 1r9j_A 159 CLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTS-------LS---------------FTEQCHQKYVAMGFHVIE 216 (673)
T ss_dssp HHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGG-------GT---------------CCCCHHHHHHHTTCEEEE
T ss_pred hhcccHHHHHHHHHHHhCCCcEEEEEECCCCccccchh-------hc---------------cCHhHHHHHHHCCCeEEE
Confidence 999999999999999999 5699999999886543322 00 123346679999999987
Q ss_pred cCCC-CCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh-------------------------------------
Q 041265 142 PVDG-HNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK------------------------------------- 183 (309)
Q Consensus 142 ~vDG-~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e------------------------------------- 183 (309)
+||| ||+++|.++++++++. .++|++|+++|+||+|++...
T Consensus 217 ~vdG~~d~~~l~~Al~~A~~~-~~~P~lI~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~~f~~p~~~~~ 295 (673)
T 1r9j_A 217 VKNGDTDYEGLRKALAEAKAT-KGKPKMIVQTTTIGFGSSKQGTEKVHGAPLGEEDIANIKAKFGRDPQKKYDVDDDVRA 295 (673)
T ss_dssp ESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTSTTTTSGGGTSSCCCHHHHHHHHHHTTSCSSCCSCCCHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHc-CCCCEEEEEecccccccccCCCcccccCCCCHHHHHHHHHhcCCCCcccccCCHHHHH
Confidence 8999 9999999999999863 288999999999999986100
Q ss_pred -------------hhHHH-------------------------------------------HHhhhc-------------
Q 041265 184 -------------LQQTR-------------------------------------------LFCKIL------------- 194 (309)
Q Consensus 184 -------------~~~~~-------------------------------------------~~~~~l------------- 194 (309)
.+|.+ +++++|
T Consensus 296 ~~~~~~~~g~~~~~~w~~~~~~~~~~~P~~~~~~~~~~~~~~p~~~~~~~p~~~~~~a~r~a~~~~L~~l~~~~p~vv~~ 375 (673)
T 1r9j_A 296 VFRMHIDKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLPTNSSAIATRKASENCLAVLFPAIPALMGG 375 (673)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTTGGGSCCCCSCEEHHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHhhChhHHHHHHHHhcCCCCchhhhhccccccchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 01111 122233
Q ss_pred ccccCCCCCch--h-----hhh-hCCCceeeccchHHHHHHHHHHHhhC-CCeeEEeecHHHHHhHHHHHHHhhhhCCCC
Q 041265 195 DNRMGGGTGLN--L-----FQK-HFPIRCFDVGIAEQHAVTFAAGLAAE-GLKPFCAIYSSFLQRCFDQVAHDVDLQKLP 265 (309)
Q Consensus 195 d~dl~~~~~~~--~-----~~~-~~p~r~~~~gIaE~~~vg~a~GlA~~-G~~pi~~~~~~F~~ra~dqi~~~~a~~~~p 265 (309)
++|+++++++. + |++ +||+|+||+||+|++|+++|+|||+. |++||+.+|++|+.++++||++ ++++++|
T Consensus 376 ~aDl~~s~~~~~~~~~~~~f~~~~~~~R~id~GIaE~~~~~~a~GlA~~GG~~P~~~~~~~F~~~~~~~ir~-~a~~~~p 454 (673)
T 1r9j_A 376 SADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNGLDAHDGIIPFGGTFLNFIGYALGAVRL-AAISHHR 454 (673)
T ss_dssp ESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHHHH-HHHHTCC
T ss_pred eccccccccccccCcccccccccCCCCCeEecCccHHHHHHHHHHHHhcCCCEEEEEehHHHHHHHHHHHHH-HHhcCCC
Confidence 37776655542 3 887 99999999999999999999999999 6999999999999999999999 5899999
Q ss_pred eEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 266 VRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 266 v~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
|+++++++|. .|++|+|||+++|+++|+++||++|++|+|+.|+
T Consensus 455 vv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~ 499 (673)
T 1r9j_A 455 VIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTET 499 (673)
T ss_dssp CEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSHHHH
T ss_pred EEEEEECCccCcCCCCcccCCHHHHHHHcCCCCCEEEeCCCHHHH
Confidence 9999998887 6889999999999999999999999999999873
No 10
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=1.2e-54 Score=444.11 Aligned_cols=275 Identities=19% Similarity=0.248 Sum_probs=231.7
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhcC----------CCCeEEEEEeCC
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLG----------KNNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~----------~~~~v~~~~GDG 62 (309)
|++|||+||+ ++||+. +++|++|+|||+|+ |+|+|.++++ .+.+|||++|||
T Consensus 100 l~~~r~~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~Av----------G~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG 169 (675)
T 1itz_A 100 LKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAV----------GLALAEKHLAARFNKPDSEIVDHYTYVILGDG 169 (675)
T ss_dssp HTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHH----------HHHHHHHHHHHHHCBTTBCCCCCCEEEEECHH
T ss_pred HHhcccCCCCCCCCCCCCCCCCeeECCccHHhHHHHHH----------HHHHHhhhhcccccccccCCCCCEEEEEECHh
Confidence 4689999999 666653 89999999999999 9999998876 678999999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
+++||++||||++|+.++ +||++|++||+|++..+.. .. +.++...+|++|||++++
T Consensus 170 ~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~-------~~---------------~~~d~~~~~~a~G~~~~~ 227 (675)
T 1itz_A 170 CQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTE-------IA---------------FTEDVSTRFEALGWHTIW 227 (675)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGG-------GT---------------CCSCHHHHHHHTTCEEEE
T ss_pred HhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChh-------hh---------------cChhHHHHHHhCCCEEEE
Confidence 999999999999999999 5899999999886543322 00 123345689999999988
Q ss_pred cCCCC-CHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh-------------------------------------
Q 041265 142 PVDGH-NLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK------------------------------------- 183 (309)
Q Consensus 142 ~vDG~-D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e------------------------------------- 183 (309)
+|||| |+++|.++++++++. .++|++||++|+||+|+++++
T Consensus 228 ~vdG~~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~ 306 (675)
T 1itz_A 228 VKNGNTGYDDIRAAIKEAKAV-TDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKS 306 (675)
T ss_dssp ESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHHC-CCCeEEEEEeeecccCcccccCcccccCCCCCHHHHHHHHHHcCCCcccccCChhHHH
Confidence 89999 999999999999872 278999999999999987522
Q ss_pred -------------hhHHHHHhh----------------------------------------------hc----------
Q 041265 184 -------------LQQTRLFCK----------------------------------------------IL---------- 194 (309)
Q Consensus 184 -------------~~~~~~~~~----------------------------------------------~l---------- 194 (309)
++|.+.|++ +|
T Consensus 307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v 386 (675)
T 1itz_A 307 HWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGELPTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGL 386 (675)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCCCCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTE
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhhhChHHHHHHHHHhcccCCchhhhhhhhhccCCcchHHHHHHHHHHHHHHHhCCCE
Confidence 112222221 12
Q ss_pred ---ccccCCCCCc-----hhhhh-hCCCceeeccchHHHHHHHHHHHhhCC--CeeEEeecHHHHHhHHHHHHHhhhhCC
Q 041265 195 ---DNRMGGGTGL-----NLFQK-HFPIRCFDVGIAEQHAVTFAAGLAAEG--LKPFCAIYSSFLQRCFDQVAHDVDLQK 263 (309)
Q Consensus 195 ---d~dl~~~~~~-----~~~~~-~~p~r~~~~gIaE~~~vg~a~GlA~~G--~~pi~~~~~~F~~ra~dqi~~~~a~~~ 263 (309)
++|+++++++ ..|++ +||+|+||+||+|++|+++|+|||+.| ++||+.+|++|+.++++||++ +++++
T Consensus 387 ~~~~aDl~~s~~~~~~g~~~f~~~~~~~R~id~gIaE~~~v~~a~GlA~~G~~~~P~~~t~~~F~~~~~~~ir~-~a~~~ 465 (675)
T 1itz_A 387 IGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMRI-SALSE 465 (675)
T ss_dssp EEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCSCHHHHHHHHHHHHTTCTTCEEEEEEEGGGHHHHHHHHHH-HHHHT
T ss_pred EEEeccccccccccccccccccccCCCCCeEeecccHHHHHHHHHHHHhcCCCCEEEEEEHHHHHHHHHHHHHH-HHhcC
Confidence 3566555443 24886 999999999999999999999999999 999999999999999999988 58999
Q ss_pred CCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 264 LPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 264 ~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
+||+++++++|. .|++|+|||+++|+++|+++||++|++|+|+.|+
T Consensus 466 lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~ 512 (675)
T 1itz_A 466 AGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNET 512 (675)
T ss_dssp CCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECCCSHHHH
T ss_pred CCEEEEEECCccccCCCCCCcCcHHHHHHhccCCCeEEEECCCHHHH
Confidence 999999988887 6889999999999999999999999999998873
No 11
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=1.3e-54 Score=443.74 Aligned_cols=275 Identities=17% Similarity=0.221 Sum_probs=231.1
Q ss_pred CCCcccCCCC-CCCCCC-------CCcCCchhhHhhHhhcccccccchhhHhHhHhcC----------CCCeEEEEEeCC
Q 041265 1 MRTIRQTCGL-ENVHDA-------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLG----------KNNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d~-------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~----------~~~~v~~~~GDG 62 (309)
|++|||+||+ ++||+. +++|++|+|||+|+ |+|+|.++++ .+.+|||++|||
T Consensus 87 l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~Av----------G~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG 156 (669)
T 2r8o_A 87 LKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAV----------GMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDG 156 (669)
T ss_dssp HTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHH----------HHHHHHHHHHHHHCBTTBCCCCCCEEEEECHH
T ss_pred HHHhhcCCCCCCCCCCccCCCCcccccccccchHHHHH----------HHHHHHHHhccccccCccCCcCCeEEEEECHh
Confidence 4689999999 676653 89999999999999 9999998765 377899999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
+++||++||||++|+.++ +||++|++||+|++..+.. .+ +.++...+|++|||++++
T Consensus 157 ~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~-------~~---------------~~~d~~~~~~a~G~~~~~ 214 (669)
T 2r8o_A 157 CMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVE-------GW---------------FTDDTAMRFEAYGWHVIR 214 (669)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGG-------GT---------------CCCCHHHHHHHTTCEEEE
T ss_pred HhcchHHHHHHHHHHHcCCCcEEEEEECCCcEeccccc-------cc---------------cCccHHHHHHHCCCeEEe
Confidence 999999999999999999 5699999999886543322 00 012335679999999988
Q ss_pred cCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh--------------------------------------
Q 041265 142 PVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK-------------------------------------- 183 (309)
Q Consensus 142 ~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e-------------------------------------- 183 (309)
+|||||+++|.++++++++. .++|++||++|+||+|+++.+
T Consensus 215 ~vdG~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~f~~~~~~~~~ 293 (669)
T 2r8o_A 215 DIDGHDAASIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQ 293 (669)
T ss_dssp EEETTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeEeccCcCCcCCCCcccCCCCCHHHHHHHHHHcCCCcccccCCHHHHHH
Confidence 89999999999999999872 278999999999999987411
Q ss_pred -----------hhHHHHHh--------------------------------------------------hhc--------
Q 041265 184 -----------LQQTRLFC--------------------------------------------------KIL-------- 194 (309)
Q Consensus 184 -----------~~~~~~~~--------------------------------------------------~~l-------- 194 (309)
++|.+.|+ ++|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~p 373 (669)
T 2r8o_A 294 WDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLP 373 (669)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHHHTTTCT
T ss_pred HHHHhhhhHHHHHHHHHHHHHhhhChHHHHHHHHHhcccCChhhhhhhHHHhhhhcCCCccHHHHHHHHHHHHHHHhhCC
Confidence 02222222 112
Q ss_pred -----ccccCCCCCc-----hhhhhhCCCceeeccchHHHHHHHHHHHhhC-CCeeEEeecHHHHHhHHHHHHHhhhhCC
Q 041265 195 -----DNRMGGGTGL-----NLFQKHFPIRCFDVGIAEQHAVTFAAGLAAE-GLKPFCAIYSSFLQRCFDQVAHDVDLQK 263 (309)
Q Consensus 195 -----d~dl~~~~~~-----~~~~~~~p~r~~~~gIaE~~~vg~a~GlA~~-G~~pi~~~~~~F~~ra~dqi~~~~a~~~ 263 (309)
++|++++.++ ..|+++||+||||+||+|++|+++|+|||+. |++||+.+|++|+.++++||++ +++++
T Consensus 374 ~v~~~~aDl~~s~~~~~~~~~~f~~~~p~R~id~GIaE~~~v~~a~GlA~~gG~~P~~~tf~~F~~~~~~~ir~-~a~~~ 452 (669)
T 2r8o_A 374 EFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRM-AALMK 452 (669)
T ss_dssp TEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGTTHHHHHH-HHHTT
T ss_pred CeEEecCcccccccccccccccccccCCCCeeecchhHHHHHHHHHHHHHcCCCeEEEeehHHHHHHHHHHHHH-HHhcC
Confidence 3666554443 4789999999999999999999999999999 8999999999999999999999 58999
Q ss_pred CCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 264 LPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 264 ~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
+||+++++++|+ .|++|+|||+++|+++||++||++|++|+|+.|+
T Consensus 453 lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~ 499 (669)
T 2r8o_A 453 QRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVES 499 (669)
T ss_dssp CCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHH
T ss_pred CCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHH
Confidence 999999998888 6889999999999999999999999999999873
No 12
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=1.3e-54 Score=444.21 Aligned_cols=275 Identities=21% Similarity=0.248 Sum_probs=229.6
Q ss_pred CCCcccCCCC-CCCCC------CCCcCCchhhHhhHhhcccccccchhhHhHhHhcC----------CCCeEEEEEeCCc
Q 041265 1 MRTIRQTCGL-ENVHD------AFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLG----------KNNHVISVIVEGA 63 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d------~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~----------~~~~v~~~~GDG~ 63 (309)
|.+|||+||+ ++||+ .+++|++|+|||+|+ |+|+|.++++ .+.+|||++|||+
T Consensus 90 l~~~r~~g~~~~ghp~~~~~g~~~~~G~lG~gl~~Av----------G~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~ 159 (680)
T 1gpu_A 90 LKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAV----------GMAMAQANLAATYNKPGFTLSDNYTYVFLGDGC 159 (680)
T ss_dssp HTTTTCTTCSCCSSCCTTSTTCCSCCCSTTHHHHHHH----------HHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred HHhhcccCCCCCCCCCccCCCeeeccccccchHHHHH----------HHHHHHHHhccccccCccCCCCCeEEEEECCCc
Confidence 4689999999 66665 399999999999999 9999998765 3778999999999
Q ss_pred cccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEec
Q 041265 64 TIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGP 142 (309)
Q Consensus 64 l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~ 142 (309)
++||++|||||+|+.++ ++|++|++||+|++..+.. .+ +.++...+|++|||+++++
T Consensus 160 ~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~-------~~---------------~~~d~~~~~~a~G~~~~~~ 217 (680)
T 1gpu_A 160 LQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATS-------IS---------------FDEDVAKRYEAYGWEVLYV 217 (680)
T ss_dssp HHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGG-------GT---------------CCCCHHHHHHHHTCEEEEE
T ss_pred cchhhHHHHHHHHHHhCCCcEEEEEECCCceEecccc-------cc---------------cCccHHHHHHhcCCeEEEE
Confidence 99999999999999999 5699999999886543322 00 0123356799999999889
Q ss_pred CCCC-CHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh--------------------------------------
Q 041265 143 VDGH-NLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK-------------------------------------- 183 (309)
Q Consensus 143 vDG~-D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e-------------------------------------- 183 (309)
|||| |+++|.++++++++. .++|++||++|+||+|++...
T Consensus 218 vdG~~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~~~~~~~~~~f~~~~~~~~~ 296 (680)
T 1gpu_A 218 ENGNEDLAGIAKAIAQAKLS-KDKPTLIKMTTTIGYGSLHAGSHSVHGAPLKADDVKQLKSKFGFNPDKSFVVPQEVYDH 296 (680)
T ss_dssp SCTTTCHHHHHHHHHHHHHC-TTSCEEEEEECCTTTTSTTTTSGGGSSSCCCHHHHHHHHHHTTCCTTCCSCCCHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHC-CCCCEEEEEEeecccccccCCCCccCCCCCCHHHHHHHHHHcCCCcCCCccCCHHHHHH
Confidence 9999 999999999999872 278999999999999986211
Q ss_pred -------------hhHHHHHh----------------------------------------------hhc----------
Q 041265 184 -------------LQQTRLFC----------------------------------------------KIL---------- 194 (309)
Q Consensus 184 -------------~~~~~~~~----------------------------------------------~~l---------- 194 (309)
++|.+.|. ++|
T Consensus 297 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~~~~~~p~v 376 (680)
T 1gpu_A 297 YQKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQLPEL 376 (680)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHTTTCTTE
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhChHHHHHHHHHhcccCCchhhhhchhhccCCcchHHHHHHHHHHHHHHhhCCCE
Confidence 01222221 112
Q ss_pred ---ccccCCCCCc-----hhhhh------hCCCceeeccchHHHHHHHHHHHhhCC-Ce-eEEeecHHHHHhHHHHHHHh
Q 041265 195 ---DNRMGGGTGL-----NLFQK------HFPIRCFDVGIAEQHAVTFAAGLAAEG-LK-PFCAIYSSFLQRCFDQVAHD 258 (309)
Q Consensus 195 ---d~dl~~~~~~-----~~~~~------~~p~r~~~~gIaE~~~vg~a~GlA~~G-~~-pi~~~~~~F~~ra~dqi~~~ 258 (309)
++|++.++++ ..|++ +||+|+||+||+|++|+++|+|||+.| ++ ||+.+|++|+.++++|||+
T Consensus 377 ~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~p~R~~d~gIaE~~~vg~a~GlA~~Gg~~~P~~~~f~~F~~~~~~air~- 455 (680)
T 1gpu_A 377 IGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRL- 455 (680)
T ss_dssp EEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHHHHHHHCTTCEEEEEEEHHHHGGGHHHHHH-
T ss_pred EEEecccccccccccccccccccccccccCCCCceecCCccHHHHHHHHHHHHhcCCCceEEEeehHHHHHHHHHHHHH-
Confidence 3566554433 35777 899999999999999999999999998 99 9999999999999999998
Q ss_pred hhhCCCCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 259 VDLQKLPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 259 ~a~~~~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
++++++||+++++++|. .|++|+|||+++|+++||++||++|++|+|+.|+
T Consensus 456 ~a~~~lpvv~v~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~ 507 (680)
T 1gpu_A 456 SALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNEV 507 (680)
T ss_dssp HHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEECCCSHHHH
T ss_pred HHhcCCCEEEEEeCCccccCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHH
Confidence 58999999999998888 6889999999999999999999999999998773
No 13
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=4.7e-54 Score=438.37 Aligned_cols=274 Identities=17% Similarity=0.197 Sum_probs=231.2
Q ss_pred CCCcccCCCC-CCCCC-------CCCcCCchhhHhhHhhcccccccchhhHhHhHhcC----------CCCeEEEEEeCC
Q 041265 1 MRTIRQTCGL-ENVHD-------AFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLG----------KNNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~~~g~-e~~~d-------~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~----------~~~~v~~~~GDG 62 (309)
|+++||++|+ ++||+ .+++|++|+|||+|+ |+|+|.++++ .+.+|||++|||
T Consensus 91 l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~Av----------G~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG 160 (651)
T 2e6k_A 91 LKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAV----------GLALAERKLAAEFNRPGHVVVDHYTYVLASDG 160 (651)
T ss_dssp HTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHH----------HHHHHHHHHHHHHCBTTBCCCCCCEEEEECHH
T ss_pred HHHhhccCCCCCCCCCCCCCCCeeeccccccchHHHHH----------HHHHHHHhhcccccccccCCCCCEEEEEEChh
Confidence 4689999999 66654 389999999999999 9999998776 578899999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
+++||++||||++|+.++ ++|++|++||+|++..+.. .. +.++...+|++|||++++
T Consensus 161 ~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~-------~~---------------~~~d~~~~~~a~G~~~~~ 218 (651)
T 2e6k_A 161 DLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTD-------LA---------------FTEDVLARYRAYGWQTLR 218 (651)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEEGG-------GT---------------CCSCHHHHHHHTTCEEEE
T ss_pred hhchhHHHHHHHHHHHcCCCeEEEEEECCCcccccccc-------cc---------------cCccHHHHHHhCCCeEEE
Confidence 999999999999999999 5699999999886544332 00 112335679999999988
Q ss_pred cCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeeccCCchhh--------------------------------------
Q 041265 142 PVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEKAMLPLK-------------------------------------- 183 (309)
Q Consensus 142 ~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~G~~~~e-------------------------------------- 183 (309)
+|||||+++|.++++++++. ++|++||++|+||+|++...
T Consensus 219 ~vdG~d~~~l~~al~~a~~~--~~P~lI~~~t~kg~G~~~~~~~~~H~~~~~~~e~~~~~~~~~~~~~~f~~~~~~~~~~ 296 (651)
T 2e6k_A 219 VEDVNDLEALRKAIKLAKLD--ERPTLIAVRSHIGFGSPKQDSAKAHGEPLGPEAVEATRRNLGWPYPPFVVPEEVYRHM 296 (651)
T ss_dssp ESCTTCHHHHHHHHHHHHHS--SSCEEEEEECCTTTTSTTTTSGGGTSSCCHHHHHHHHHHHHTCCCCTTCCCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHC--CCCEEEEEEeEecccccccccccccccCCCHHHHHHHHHHcCCCcccccCChHHHHHH
Confidence 89999999999999999875 88999999999999985100
Q ss_pred ----------hhHHHHHh------------------------------------------hhc-------------cccc
Q 041265 184 ----------LQQTRLFC------------------------------------------KIL-------------DNRM 198 (309)
Q Consensus 184 ----------~~~~~~~~------------------------------------------~~l-------------d~dl 198 (309)
++|.+.|+ ++| ++|+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~r~a~~~~L~~~~~~~p~~~~~~aDl 376 (651)
T 2e6k_A 297 DMREKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGELPPLPEEPPSFDKPIATRAASGRALNLLAPRLPELLGGSADL 376 (651)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCCCCCSCCCCCSCBCHHHHHHHHHHHHGGGCTTEEEEESSC
T ss_pred HHhhhchhhHHHHHHHHHHhhhhChHHHHHHHHHhcCcCCchhhhccccCccHHHHHHHHHHHHHHHhhCCCEEEEeCcc
Confidence 11322222 123 3677
Q ss_pred CCCCCc-----hhhhh-hCCCceeeccchHHHHHHHHHHHhhCC-CeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEe
Q 041265 199 GGGTGL-----NLFQK-HFPIRCFDVGIAEQHAVTFAAGLAAEG-LKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAID 271 (309)
Q Consensus 199 ~~~~~~-----~~~~~-~~p~r~~~~gIaE~~~vg~a~GlA~~G-~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~ 271 (309)
++++++ .+|++ +||+|+||+||+|++|+++|+|||+.| ++||+.+|+.|+.++++||+. .+++++||+++++
T Consensus 377 ~~s~~~~~~~~~~f~~~~~p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~~~F~~~~~~air~-~a~~~lpvv~~~t 455 (651)
T 2e6k_A 377 TPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAILNGLNLHGGYRAYGGTFLVFSDYMRPAIRL-AALMGVPTVFVFT 455 (651)
T ss_dssp HHHHTCSCTTCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGGSHHHHHH-HHHHTCCCEEEEE
T ss_pred ccccccccccccccCccCCCCceEecCcCHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHHHHHHH-HHhcCCCEEEEEE
Confidence 665554 45887 999999999999999999999999998 999999999999999999988 5899999999998
Q ss_pred CCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 272 RAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 272 ~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
++|. .|++|+|||+++|+++||++||++|++|+|+.|+
T Consensus 456 ~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~ 494 (651)
T 2e6k_A 456 HDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYET 494 (651)
T ss_dssp CCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHH
T ss_pred CCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHHH
Confidence 8887 6889999999999999999999999999999873
No 14
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=1.4e-49 Score=414.38 Aligned_cols=278 Identities=18% Similarity=0.127 Sum_probs=218.9
Q ss_pred CCCccc---CCCCCCC-------C-CCCCcCCchhhHhhHhhcccccccchhhHhHhHh-------cCCCCeEEEEEeCC
Q 041265 1 MRTIRQ---TCGLENV-------H-DAFGVGHSSTSISAGLRTRINYFRYVGMAVGRDL-------LGKNNHVISVIVEG 62 (309)
Q Consensus 1 ~~~~r~---~~g~e~~-------~-d~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~-------~~~~~~v~~~~GDG 62 (309)
|.+||| .+|++++ + +.|+|||+|+|+|.|+ |+|+++|+ ++.+.+|||++|||
T Consensus 162 l~~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~Ai----------G~A~a~~~l~~~~~~~~~~~~v~aviGDG 231 (886)
T 2qtc_A 162 LDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAI----------YQAKFLKYLEHRGLKDTSKQTVYAFLGDG 231 (886)
T ss_dssp HTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHH----------HHHHHHHHHHHTTSCCCTTCCEEEEEETG
T ss_pred HHhccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHH----------HHHHHhhhhcccccccCCCCEEEEEECCc
Confidence 478999 5677332 2 5599999999999999 99999998 77889999999999
Q ss_pred ccccchHHHHHHHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEe
Q 041265 63 ATIARMSYEAINNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIG 141 (309)
Q Consensus 63 ~l~eG~~~EAln~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~ 141 (309)
+++||++|||||+|+.++ +||++|++||.++...+. ++......+ ...+|+++||+++.
T Consensus 232 ~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v-----------~~~~~~~~~---------l~~~~~~~G~~~~~ 291 (886)
T 2qtc_A 232 EMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPV-----------TGNGKIINE---------LEGIFEGAGWNVIK 291 (886)
T ss_dssp GGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBS-----------CTTSCHHHH---------HHHHHHHTTCEEEE
T ss_pred cccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCc-----------cccccccHH---------HHHHHHhCCCCEEE
Confidence 999999999999999999 689998888876432211 110000111 24578999999883
Q ss_pred cC--------------------------------------------------------------------CCCCHHHHHH
Q 041265 142 PV--------------------------------------------------------------------DGHNLEDLAY 153 (309)
Q Consensus 142 ~v--------------------------------------------------------------------DG~D~~~l~~ 153 (309)
.+ ||||+++|++
T Consensus 292 v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~ 371 (886)
T 2qtc_A 292 VMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYA 371 (886)
T ss_dssp ECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHH
T ss_pred EecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHH
Confidence 33 7999999999
Q ss_pred HHHHhhcCCCCCcEEEEEEeeeccCCchhh--------------------------------------------------
Q 041265 154 VLKQVKAIPDPGAVLIHVITEKEKAMLPLK-------------------------------------------------- 183 (309)
Q Consensus 154 al~~a~~~~~~~P~~I~~~T~kg~G~~~~e-------------------------------------------------- 183 (309)
+++++++.+ ++|++||++|+||+|+++.+
T Consensus 372 a~~~A~~~~-~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~~~~f~~~~~~~~~~~~ 450 (886)
T 2qtc_A 372 AFKKAQETK-GKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTY 450 (886)
T ss_dssp HHHHHHHCC-SSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTTSHHHHH
T ss_pred HHHHHHHcC-CCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHHHcCCCCChhhhccccccCCccchHHHHH
Confidence 999998753 58999999999999986321
Q ss_pred -----------------------------------------hhHHHHHhhhc----------------ccccC---CC--
Q 041265 184 -----------------------------------------LQQTRLFCKIL----------------DNRMG---GG-- 201 (309)
Q Consensus 184 -----------------------------------------~~~~~~~~~~l----------------d~dl~---~~-- 201 (309)
.+++++|++.| ++|.. |+
T Consensus 451 ~~~r~~~l~g~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~G~~d 530 (886)
T 2qtc_A 451 LHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEG 530 (886)
T ss_dssp HHHHHHHTTSCSSCCCCSCCSCCCCCCGGGGHHHHSCCSSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGGTCHH
T ss_pred HHHHHHHhcccCcchhhhhhhcccCCchhhhhhhccCCCCcchHHHHHHHHHHHHHhhcccCCcEEEEcCccccccCccc
Confidence 01234555544 25522 21
Q ss_pred ----CCc-----hhhh-----------hhCCCceeeccchHHH-HH---HHHHHHhhCC--CeeEEeecHHH-HHhHHHH
Q 041265 202 ----TGL-----NLFQ-----------KHFPIRCFDVGIAEQH-AV---TFAAGLAAEG--LKPFCAIYSSF-LQRCFDQ 254 (309)
Q Consensus 202 ----~~~-----~~~~-----------~~~p~r~~~~gIaE~~-~v---g~a~GlA~~G--~~pi~~~~~~F-~~ra~dq 254 (309)
+++ ..|. +.||+|+||+||+|++ |+ ++|+|||+.| ++||+.+|++| ++|++||
T Consensus 531 l~~S~~i~~~~~~~f~~~d~~~~~~~~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qRa~Dq 610 (886)
T 2qtc_A 531 LFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDL 610 (886)
T ss_dssp HHHHHCBBCC-----------------CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHH
T ss_pred ccccccccccCCcccccccchhhhhhhhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHHHHHH
Confidence 121 3343 6789999999999999 46 7999999999 89999999999 7999999
Q ss_pred HHHhhhhCCCCeEEEEeCCCc-cCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 255 VAHDVDLQKLPVRFAIDRAGL-VGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 255 i~~~~a~~~~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
|++++++++.++++.+..++. .+++|+|||+.+|+++|+++||++|++|+|++|+
T Consensus 611 i~~~~d~~~~~v~l~~~~~~~~~g~dG~tHq~~~~~a~lr~iPnl~V~~Pada~E~ 666 (886)
T 2qtc_A 611 CWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEV 666 (886)
T ss_dssp HHHHHHTTCCCEEEEESCSTTTSTTTCTTTCCSCHHHHHTTSTTEEEECCSSHHHH
T ss_pred HHHHHHHhcCCEEEEEecCcccCCCCCCccCCcchHHHHhhCCCCEEEecCCHHHH
Confidence 999999999999887664433 5789999999999999999999999999999874
No 15
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=1.1e-42 Score=363.96 Aligned_cols=258 Identities=15% Similarity=0.107 Sum_probs=196.0
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcC-----CCCeEEEEEeCCcc-ccchHHHHHHHHhhccCc---EEEEE
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLG-----KNNHVISVIVEGAT-IARMSYEAINNAGVLNKA---LKRLH 87 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~-----~~~~v~~~~GDG~l-~eG~~~EAln~A~~~~~~---Li~i~ 87 (309)
+.++|+|+++|+|+ |+|+|.++++ .+.++||++|||++ ++|++|||||+|+.++.| +++|+
T Consensus 318 ~~~shlg~~~p~A~----------G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv 387 (933)
T 2jgd_A 318 FNPSHLEIVSPVVI----------GSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIV 387 (933)
T ss_dssp CCCSSTTCHHHHHH----------HHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEE
T ss_pred ccCcccccccCHHH----------HHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEE
Confidence 78899999999999 9999999884 67789999999998 999999999999999988 88888
Q ss_pred eCcchhhhh-hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC--CCC
Q 041265 88 SNPQFRQLC-QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI--PDP 164 (309)
Q Consensus 88 ~nn~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~--~~~ 164 (309)
+||+|+.++ +.. + +.. .+....+++++||+++ .|||||+++++++++++++. ..+
T Consensus 388 ~nN~~~ist~~~~---~----~~~--------------~~~~~~~a~a~g~p~~-~VdG~D~~av~~a~~~A~e~~r~~~ 445 (933)
T 2jgd_A 388 INNQVGFTTSNPL---D----ARS--------------TPYCTDIGKMVQAPIF-HVNADDPEAVAFVTRLALDFRNTFK 445 (933)
T ss_dssp EECC------------------------------------CGGGGGGTTTCCEE-EEETTCHHHHHHHHHHHHHHHHHHC
T ss_pred EeCCccccCCCHH---h----ccc--------------chhHHHHHHHcCCCEE-EECCCCHHHHHHHHHHHHHHHHhcC
Confidence 888897765 443 0 000 1112456899999999 89999999999998876531 127
Q ss_pred CcEEEEEEeeeccCCchhh--------------------------------------------------------hh---
Q 041265 165 GAVLIHVITEKEKAMLPLK--------------------------------------------------------LQ--- 185 (309)
Q Consensus 165 ~P~~I~~~T~kg~G~~~~e--------------------------------------------------------~~--- 185 (309)
+|++|+++|+|++|+...+ ..
T Consensus 446 ~P~lIe~~tyR~~GH~~~D~~~yr~~~e~~~~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p 525 (933)
T 2jgd_A 446 RDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRP 525 (933)
T ss_dssp CCEEEEEECCCCC-----------CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEEC
T ss_pred CCEEEEEeeeeecCcCcccchhhCCHHHHHHHHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999998853321 00
Q ss_pred -------H------------------------------------------------------------HHHHhhhc----
Q 041265 186 -------Q------------------------------------------------------------TRLFCKIL---- 194 (309)
Q Consensus 186 -------~------------------------------------------------------------~~~~~~~l---- 194 (309)
| ..+++.+|
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~tg~~~~~l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~ 605 (933)
T 2jgd_A 526 MNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLV 605 (933)
T ss_dssp CCGGGCTTGGGSSCCTTCCCCCCCCHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHH
T ss_pred CCcchhhcccccccccccCCCCCCCHHHHHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Confidence 0 00111111
Q ss_pred ---------ccccCCC------------------CCchhhhhhC-CCceeeccchHHHHHHHHHHHhhCCCe--eEEe-e
Q 041265 195 ---------DNRMGGG------------------TGLNLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAEGLK--PFCA-I 243 (309)
Q Consensus 195 ---------d~dl~~~------------------~~~~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~G~~--pi~~-~ 243 (309)
++|++.+ +.+.+|.++| |+||+|+||+|++++|+|+|+|+.|++ ||++ +
T Consensus 606 ~~~~~V~~~g~Dv~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~q 685 (933)
T 2jgd_A 606 DEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQ 685 (933)
T ss_dssp TTTCCEEEEETTTTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-
T ss_pred hcCCCEEEECCccCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 2676654 3467899999 999999999999999999999999988 9886 8
Q ss_pred cHHHHH---hHHHHHHHhh-hh--CCCCeEEEEeCCCccCCCCCCCCCh--hHHHHHhcCCCcEEEEeCCCCC
Q 041265 244 YSSFLQ---RCFDQVAHDV-DL--QKLPVRFAIDRAGLVGADGPTHCGA--FDTTFMACLPNMVVMKDIKLVL 308 (309)
Q Consensus 244 ~~~F~~---ra~dqi~~~~-a~--~~~pv~~~~~~~g~~g~~G~tH~~~--~d~~~~~~iP~~~v~~Ps~~~e 308 (309)
|++|+. |++|||++++ ++ ++.||++++++ |+.| .|++||+. +++..++++|||+|++|+||.|
T Consensus 686 f~dF~~~AQra~DQii~~~~ak~~~~~~vv~~l~~-G~~g-~G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e 756 (933)
T 2jgd_A 686 FGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPH-GYEG-QGPEHSSARLERYLQLCAEQNMQVCVPSTPAQ 756 (933)
T ss_dssp CGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEEC-CCSS-SCTTSSCCCHHHHHHTCCTTCCEEECCCSHHH
T ss_pred EhhhhcccHHHHHHHHHHHHHHHccCCCEEEEEeC-CCCC-CCcccccchHHHHHHHhCCCCeEEEecCCHHH
Confidence 999985 9999999997 64 58999999998 4545 49999995 5444455779999999999876
No 16
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=1e-41 Score=354.68 Aligned_cols=256 Identities=15% Similarity=0.102 Sum_probs=202.5
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcC----------CCCeEEEEEeCCcc-ccchHHHHHHHHhhccCc---
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLG----------KNNHVISVIVEGAT-IARMSYEAINNAGVLNKA--- 82 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~----------~~~~v~~~~GDG~l-~eG~~~EAln~A~~~~~~--- 82 (309)
..+||+|+++|+|+ |+|+|.++++ .+..+||++|||++ +||.+|||||+|+.++.|
T Consensus 242 ~n~s~Lg~~~P~A~----------G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~ 311 (868)
T 2yic_A 242 ANPSHLEAVDPVLE----------GLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGG 311 (868)
T ss_dssp CCCSSTTTTHHHHH----------HHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSC
T ss_pred CCCccccccccHHH----------HHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCC
Confidence 45789999999999 9999998864 56789999999995 899999999999999976
Q ss_pred EEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhh---
Q 041265 83 LKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVK--- 159 (309)
Q Consensus 83 Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~--- 159 (309)
+++|++||+|+.+++.. + +.. .+....++++|||+++ .|||||+++++++++++.
T Consensus 312 vi~iv~NN~~g~st~~~---~----~~s--------------~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~a 369 (868)
T 2yic_A 312 TIHIVVNNQIGFTTAPT---D----SRS--------------SEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFR 369 (868)
T ss_dssp CEEEEEECSCBTTBCHH---H----HCS--------------SSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCcccccCcc---c----ccc--------------ccCHHHHHHhCCCcEE-EEeCCCHHHHHHHHHHHHHHH
Confidence 99999999998766432 0 111 0112346799999999 999999999999988764
Q ss_pred -cCCCCCcEEEEEEeeeccCCchhh-------------------------------------------------------
Q 041265 160 -AIPDPGAVLIHVITEKEKAMLPLK------------------------------------------------------- 183 (309)
Q Consensus 160 -~~~~~~P~~I~~~T~kg~G~~~~e------------------------------------------------------- 183 (309)
+. ++|++|+++|+|++|+...+
T Consensus 370 r~~--~~PvlIe~~tyR~~GHs~~D~p~~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~ 447 (868)
T 2yic_A 370 QAF--KKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNE 447 (868)
T ss_dssp HHH--CCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC--CCCEEEEEEeecCCCcCcccccccCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34 78999999999999965432
Q ss_pred -----h-h---H-------HH---------------------------------------------------HHhhh---
Q 041265 184 -----L-Q---Q-------TR---------------------------------------------------LFCKI--- 193 (309)
Q Consensus 184 -----~-~---~-------~~---------------------------------------------------~~~~~--- 193 (309)
+ . | .. +++++
T Consensus 448 a~~~~p~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~~~i~~a~~e~la~ 527 (868)
T 2yic_A 448 VRELEKHEIEPSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLAL 527 (868)
T ss_dssp HHHHHHC-----------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHH
T ss_pred HHhcCCCCcccccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 1 0 0 00 01111
Q ss_pred ---c---------ccccCCCC------------------Cchhh------hh-hCCCceeeccchHHHHHHHHHHHhhCC
Q 041265 194 ---L---------DNRMGGGT------------------GLNLF------QK-HFPIRCFDVGIAEQHAVTFAAGLAAEG 236 (309)
Q Consensus 194 ---l---------d~dl~~~~------------------~~~~~------~~-~~p~r~~~~gIaE~~~vg~a~GlA~~G 236 (309)
| +.|.+.++ .+.+| .+ .+|+||+|+||+|++++|+|+|||+.|
T Consensus 528 ~~l~~~~~~V~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G 607 (868)
T 2yic_A 528 GSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGN 607 (868)
T ss_dssp HHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCEEEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccC
Confidence 1 24555432 24678 66 469999999999999999999999999
Q ss_pred C--eeEE-eecHHHHHhH---HHHHHHhhh---hCCCCeEEEEeCCCccCCCCCCCCC--hhHHHHHhcCCCcEEEEeCC
Q 041265 237 L--KPFC-AIYSSFLQRC---FDQVAHDVD---LQKLPVRFAIDRAGLVGADGPTHCG--AFDTTFMACLPNMVVMKDIK 305 (309)
Q Consensus 237 ~--~pi~-~~~~~F~~ra---~dqi~~~~a---~~~~pv~~~~~~~g~~g~~G~tH~~--~~d~~~~~~iP~~~v~~Ps~ 305 (309)
+ +|++ .+|++|+.++ +||++++.. .+++||+++++++| .| +|++|++ .|++..|+++|||+|++|+|
T Consensus 608 ~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~-~G-~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~ 685 (868)
T 2yic_A 608 PDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPST 685 (868)
T ss_dssp TTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCCS
T ss_pred CCCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC-CC-CChhhcCCcHHHHHhcCCCCCCEEEEeCC
Confidence 5 4555 4799999887 999999852 45899999999987 56 8999987 77777779999999999999
Q ss_pred CCC
Q 041265 306 LVL 308 (309)
Q Consensus 306 ~~e 308 (309)
|++
T Consensus 686 p~~ 688 (868)
T 2yic_A 686 PAN 688 (868)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 17
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=3.5e-41 Score=346.60 Aligned_cols=271 Identities=11% Similarity=0.051 Sum_probs=209.5
Q ss_pred CcccCCCCCCCCCC------CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccch---HHHHH
Q 041265 3 TIRQTCGLENVHDA------FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARM---SYEAI 73 (309)
Q Consensus 3 ~~r~~~g~e~~~d~------~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~---~~EAl 73 (309)
++++.||+++|++. .++|++|+|||.|+ |+|+ .+.+.+|+|++||||++||. +||+.
T Consensus 152 qfs~~gg~pgHp~~~tpGve~~tG~LGqGls~Av----------G~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~ 217 (845)
T 3ahc_A 152 QFSYPGGIPSHFAPETPGSIHEGGELGYALSHAY----------GAVM----NNPSLFVPCIIGDGEAETGPLATGWQSN 217 (845)
T ss_dssp HBTCTTSBCSSCCTTSTTCSCCCSSTTCHHHHHH----------HHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGG
T ss_pred hccCCCCCCCCCCCCCCCeecCCCCccchHhHHh----------hhhh----cCCCCeEEEEECCCchhhhcchhhhHHh
Confidence 34555668888764 89999999999999 9995 46688999999999999999 99999
Q ss_pred HHHhhcc-CcEEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCC-C--CHH
Q 041265 74 NNAGVLN-KALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDG-H--NLE 149 (309)
Q Consensus 74 n~A~~~~-~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG-~--D~~ 149 (309)
++|+.++ +||+.|.|.|+|++..++. .. ....++ ...+|++|||+++..||| | |++
T Consensus 218 ~~~~~~~l~nl~~i~D~N~~~i~g~t~------l~-----~~~~e~---------l~~rf~a~Gw~v~~~vdG~~~~D~~ 277 (845)
T 3ahc_A 218 KLVNPRTDGIVLPILHLNGYKIANPTI------LA-----RISDEE---------LHDFFRGMGYHPYEFVAGFDNEDHM 277 (845)
T ss_dssp GSCCTTTSCEEEEEEEECSBSSSSBCH------HH-----HSCHHH---------HHHHHHHTTEEEEEEECSSSSCCHH
T ss_pred hhhhhhcCCCEEEEEECCCCcCCCCcc------cc-----ccCcHH---------HHHHHHHCCCEEeEEeCCCCCcCHH
Confidence 9999998 7999888888774322111 00 000122 256899999999757899 9 999
Q ss_pred HHHHHHH---------------HhhcCCCCCc--EEEEEEeeecc-------CCchhh----------------------
Q 041265 150 DLAYVLK---------------QVKAIPDPGA--VLIHVITEKEK-------AMLPLK---------------------- 183 (309)
Q Consensus 150 ~l~~al~---------------~a~~~~~~~P--~~I~~~T~kg~-------G~~~~e---------------------- 183 (309)
+|.+++. ++|+.+.++| ++|+++|+||+ |.+ .|
T Consensus 278 ~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~tgp~~~~G~~-~eg~~~~H~~pl~~~~~~~~~~~~ 356 (845)
T 3ahc_A 278 SIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKK-TEGSWRAHQVPLASARDTEEHFEV 356 (845)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTTTSCSEETTEE-CTTSGGGSSCSCTTTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccCCCCCCCCCcc-cCCCccccCCCCCCcccCHHHHHH
Confidence 9997753 2333212679 99999999999 753 22
Q ss_pred -hhH-----------------------------------------------------------------------HHHHh
Q 041265 184 -LQQ-----------------------------------------------------------------------TRLFC 191 (309)
Q Consensus 184 -~~~-----------------------------------------------------------------------~~~~~ 191 (309)
..| +.+++
T Consensus 357 l~~wl~~~~p~elF~~~~~~~~~~~~~~~~g~~r~~~~P~~~~g~l~~~~~lp~~~~~~~~~~~~~~~g~~~~~atra~g 436 (845)
T 3ahc_A 357 LKGWMESYKPEELFNADGSIKDDVTAFMPKGELRIGANPNANGGVIREDLKLPELDQYEVTGVKEYGHGWGQVEAPRALG 436 (845)
T ss_dssp HHHHHHHTCGGGTBCTTSCBCHHHHTTSCCGGGSTTTCGGGGGGGTCCCCCCCCGGGGCCTHHHHHCTTEEEECTHHHHH
T ss_pred HhhhccCCCchhccCCchHHHHHHHHhCcchHhHhhhCHHhcCCcCccccCCCChHhhhccccccccCCccchhHHHHHH
Confidence 000 01111
Q ss_pred hhc--------------ccccCCCCCchhhhhh---------C--C--------CceeeccchHHHHHHHHHHHhhCCCe
Q 041265 192 KIL--------------DNRMGGGTGLNLFQKH---------F--P--------IRCFDVGIAEQHAVTFAAGLAAEGLK 238 (309)
Q Consensus 192 ~~l--------------d~dl~~~~~~~~~~~~---------~--p--------~r~~~~gIaE~~~vg~a~GlA~~G~~ 238 (309)
+.| ++|+.+|+++..|.+. + | +|+|+ ||+|++|+++++|||+.|.+
T Consensus 437 ~~L~~l~~~~p~~~vv~sADl~~Sn~t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M~gia~Glal~G~~ 515 (845)
T 3ahc_A 437 AYCRDIIKNNPDSFRIFGPDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQCEGFLEAYLLTGRH 515 (845)
T ss_dssp HHHHHHHHHSTTTEEEEESSCTTTTTCGGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhCCCcEEEEecCCCccccHHHHHhhcccccccccccCCcccccCCCCcEee-eecHHHHHHHHHHHHhcCCC
Confidence 111 5889999998877766 6 7 89999 99999999999999999999
Q ss_pred eEEeecHHHH---HhHHHH----HHHhhhhC----CC-CeEEEEeCCCc-cCCCCCCCCChhHH--HHHh---cCCCcEE
Q 041265 239 PFCAIYSSFL---QRCFDQ----VAHDVDLQ----KL-PVRFAIDRAGL-VGADGPTHCGAFDT--TFMA---CLPNMVV 300 (309)
Q Consensus 239 pi~~~~~~F~---~ra~dq----i~~~~a~~----~~-pv~~~~~~~g~-~g~~G~tH~~~~d~--~~~~---~iP~~~v 300 (309)
|++.+|++|+ .|+++| ||+.++.+ .. +|+++++|.|+ .|+||+|||+.+.+ .+++ .+||++|
T Consensus 516 ~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d~l~~~r~~~iPn~~V 595 (845)
T 3ahc_A 516 GIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINKTFNNDHVTNI 595 (845)
T ss_dssp EEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHHHHGGGCCTTCCCEEE
T ss_pred CceecchhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHHHHHHHhhccCCCCeEE
Confidence 9999888886 899999 99984443 34 79999999999 79999999995444 4444 6799999
Q ss_pred EEeCCCCCC
Q 041265 301 MKDIKLVLL 309 (309)
Q Consensus 301 ~~Ps~~~e~ 309 (309)
+.|+|+.|+
T Consensus 596 ~~PaDanet 604 (845)
T 3ahc_A 596 YFATDANML 604 (845)
T ss_dssp EECCSHHHH
T ss_pred EeCCCHHHH
Confidence 999998763
No 18
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=7.9e-41 Score=355.59 Aligned_cols=258 Identities=14% Similarity=0.095 Sum_probs=202.1
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcC----------CCCeEEEEEeCCcc-ccchHHHHHHHHhhccCc---
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLG----------KNNHVISVIVEGAT-IARMSYEAINNAGVLNKA--- 82 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~----------~~~~v~~~~GDG~l-~eG~~~EAln~A~~~~~~--- 82 (309)
..+||+|+++|+|+ |+|+|.++++ .+..+||++|||++ +||.+|||||+|+.++.|
T Consensus 487 ~n~s~Lg~~~p~A~----------G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~ 556 (1113)
T 2xt6_A 487 ANPSHLEAVDPVLE----------GLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGG 556 (1113)
T ss_dssp CCCSSTTTTHHHHH----------HHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSC
T ss_pred CCCccccccccHHH----------HHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCC
Confidence 45789999999999 9999999876 56789999999995 999999999999999976
Q ss_pred EEEEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC-
Q 041265 83 LKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI- 161 (309)
Q Consensus 83 Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~- 161 (309)
+++|++||+|+..++.. .+.. .+....++++|||+++ .|||||+++++++++++.+.
T Consensus 557 vi~iv~NN~~gist~~~-------~~~s--------------~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~~ 614 (1113)
T 2xt6_A 557 TIHIVVNNQIGFTTAPT-------DSRS--------------SEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFR 614 (1113)
T ss_dssp CEEEEEECSCBTTBCHH-------HHCS--------------SSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCcccccCcc-------cccc--------------ccCHHHHHHhcCCcEE-EEcCCCHHHHHHHHHHHHHHH
Confidence 99999999997766432 0111 0111346899999999 99999999999998866431
Q ss_pred -CCCCcEEEEEEeeeccCCchhh---------------------------------------------------------
Q 041265 162 -PDPGAVLIHVITEKEKAMLPLK--------------------------------------------------------- 183 (309)
Q Consensus 162 -~~~~P~~I~~~T~kg~G~~~~e--------------------------------------------------------- 183 (309)
+.++|++|+++|+|++|+...+
T Consensus 615 r~~~~PvlIe~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~ 694 (1113)
T 2xt6_A 615 QAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVR 694 (1113)
T ss_dssp HHHCCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEEEeEccCCcCCCCccccCChHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1278999999999999965432
Q ss_pred ---h-h---H-------HH------------------------------------------H---------Hhhh-----
Q 041265 184 ---L-Q---Q-------TR------------------------------------------L---------FCKI----- 193 (309)
Q Consensus 184 ---~-~---~-------~~------------------------------------------~---------~~~~----- 193 (309)
+ . | .. . +.++
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~~~ 774 (1113)
T 2xt6_A 695 ELEKHEIEPSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGS 774 (1113)
T ss_dssp HHHHHC----------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHH
T ss_pred hcCCCCcccccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 1 0 0 00 0 0011
Q ss_pred -c---------ccccCCCC------------------Cchhh------hh-hCCCceeeccchHHHHHHHHHHHhhCCC-
Q 041265 194 -L---------DNRMGGGT------------------GLNLF------QK-HFPIRCFDVGIAEQHAVTFAAGLAAEGL- 237 (309)
Q Consensus 194 -l---------d~dl~~~~------------------~~~~~------~~-~~p~r~~~~gIaE~~~vg~a~GlA~~G~- 237 (309)
| +.|.+.++ .+.+| .+ .+|+||+|+||+|++++|+|+|||+.|+
T Consensus 775 ll~~~~~V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~ 854 (1113)
T 2xt6_A 775 LIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPD 854 (1113)
T ss_dssp HHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTT
T ss_pred HHhcCCCEEEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcCCC
Confidence 1 24555432 35788 66 4599999999999999999999999995
Q ss_pred -eeEEe-ecHHHHHhH---HHHHHHhhh---hCCCCeEEEEeCCCccCCCCCCCCC--hhHHHHHhcCCCcEEEEeCCCC
Q 041265 238 -KPFCA-IYSSFLQRC---FDQVAHDVD---LQKLPVRFAIDRAGLVGADGPTHCG--AFDTTFMACLPNMVVMKDIKLV 307 (309)
Q Consensus 238 -~pi~~-~~~~F~~ra---~dqi~~~~a---~~~~pv~~~~~~~g~~g~~G~tH~~--~~d~~~~~~iP~~~v~~Ps~~~ 307 (309)
+|+++ +|++|+.++ +||+++++. .+++||+++++++| .| +|++|++ .+++..|+++|||+|++|+||+
T Consensus 855 ~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~-~G-~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~ 932 (1113)
T 2xt6_A 855 AMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPA 932 (1113)
T ss_dssp SEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCSSHH
T ss_pred CceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCC-CC-CChhhhcccHHHHHhcCCCCCcEEEecCCHH
Confidence 45554 799999877 999999862 46899999999987 56 8999988 5555556999999999999987
Q ss_pred C
Q 041265 308 L 308 (309)
Q Consensus 308 e 308 (309)
+
T Consensus 933 ~ 933 (1113)
T 2xt6_A 933 N 933 (1113)
T ss_dssp H
T ss_pred H
Confidence 5
No 19
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=99.94 E-value=2.9e-28 Score=232.93 Aligned_cols=123 Identities=20% Similarity=0.277 Sum_probs=93.6
Q ss_pred hHHHHHhhhc-------------ccccC---CCCC-chhhhhhC-CCceeeccchHHHHHHHHHHHhhCCCeeEEe-ecH
Q 041265 185 QQTRLFCKIL-------------DNRMG---GGTG-LNLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAEGLKPFCA-IYS 245 (309)
Q Consensus 185 ~~~~~~~~~l-------------d~dl~---~~~~-~~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~-~~~ 245 (309)
+|+++|+++| ++|++ +.++ +.+|.++| |+|++|+||+|++|+++|+|||+.|++||++ +|+
T Consensus 52 ~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~tf~ 131 (369)
T 1ik6_A 52 NMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFV 131 (369)
T ss_dssp CHHHHHHHHHHHHHHHCTTEEEEEC---------CTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred cHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEecch
Confidence 4788999887 37776 4333 58899999 9999999999999999999999999999997 799
Q ss_pred HHHHhHHHHHHHhhhhC--------CCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 246 SFLQRCFDQVAHDVDLQ--------KLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 246 ~F~~ra~dqi~~~~a~~--------~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
+|++|++|||++++|++ ++||+++++++|..+ +|++|+.. ++++|+++|||+|++|+|+.|+
T Consensus 132 ~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g-~g~~hs~~-~~a~l~~iPnl~V~~Psd~~e~ 201 (369)
T 1ik6_A 132 DFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTR-GGLYHSNS-PEAIFVHTPGLVVVMPSTPYNA 201 (369)
T ss_dssp ----CCHHHHHHHHHHHHC------CCCCEEEEEECC-------------HHHHHHTCTTCEEECCCSHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCC-CCcccccc-HHHHHcCCCCcEEEecCCHHHH
Confidence 99999999999998876 999999999988766 67766555 5799999999999999998773
No 20
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=99.92 E-value=2.9e-26 Score=216.65 Aligned_cols=122 Identities=16% Similarity=0.238 Sum_probs=108.5
Q ss_pred hHHHHHhhhc-------------ccccCCC---C-CchhhhhhC-CCceeeccchHHHHHHHHHHHhhCCCeeEEe-ecH
Q 041265 185 QQTRLFCKIL-------------DNRMGGG---T-GLNLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAEGLKPFCA-IYS 245 (309)
Q Consensus 185 ~~~~~~~~~l-------------d~dl~~~---~-~~~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~-~~~ 245 (309)
+|+++|+++| ++|++.+ + .+++|.++| |+|++|+||+|++++++|+|||+.|++|+++ +|+
T Consensus 6 ~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t~~ 85 (338)
T 1qs0_B 6 TMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFA 85 (338)
T ss_dssp CHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECSCG
T ss_pred hHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEeccH
Confidence 5777888776 3677532 2 358899999 9999999999999999999999999999997 799
Q ss_pred HHHHhHHHHHHHhhhhCC--------CCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCC
Q 041265 246 SFLQRCFDQVAHDVDLQK--------LPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVL 308 (309)
Q Consensus 246 ~F~~ra~dqi~~~~a~~~--------~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e 308 (309)
+|++|++|||++++++++ +||+++++++| +.+|++||+.+|+++|+++|||+|++|+|+.|
T Consensus 86 ~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g--~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e 154 (338)
T 1qs0_B 86 DYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG--GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYD 154 (338)
T ss_dssp GGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC--SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC--CCCCcccccccHHHHHhcCCCCEEEeeCCHHH
Confidence 999999999999988544 99999999877 46899999999999999999999999999876
No 21
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=99.92 E-value=7.8e-26 Score=214.06 Aligned_cols=124 Identities=20% Similarity=0.294 Sum_probs=108.1
Q ss_pred hhHHHHHhhhc-------------ccccC---CCCC-chhhhhhC-CCceeeccchHHHHHHHHHHHhhCCCeeEEe-ec
Q 041265 184 LQQTRLFCKIL-------------DNRMG---GGTG-LNLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAEGLKPFCA-IY 244 (309)
Q Consensus 184 ~~~~~~~~~~l-------------d~dl~---~~~~-~~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~-~~ 244 (309)
.+|+++|+++| ++|++ +.++ +++|.++| |+||+|+||+|++|+++|+|||+.|++||++ +|
T Consensus 15 ~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~~f 94 (341)
T 2ozl_B 15 VTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMT 94 (341)
T ss_dssp EEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEecc
Confidence 46777888877 37776 3333 58899999 9999999999999999999999999999998 79
Q ss_pred HHHHHhHHHHHHHhhhh--------CCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCCC
Q 041265 245 SSFLQRCFDQVAHDVDL--------QKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVLL 309 (309)
Q Consensus 245 ~~F~~ra~dqi~~~~a~--------~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e~ 309 (309)
++|++|++|||++++++ +++||++++++ |..|++|+||+...| ++|+++|||+|++|+|+.|+
T Consensus 95 ~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~~~e-a~l~~iP~l~V~~Psd~~e~ 165 (341)
T 2ozl_B 95 FNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQCFA-AWYGHCPGLKVVSPWNSEDA 165 (341)
T ss_dssp GGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCCCCH-HHHHTSTTCEEECCCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhhHHH-HHhccCCCCEEEEeCCHHHH
Confidence 99999999999999883 89999999997 676789999944334 99999999999999998773
No 22
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=99.92 E-value=4.3e-26 Score=215.91 Aligned_cols=123 Identities=15% Similarity=0.216 Sum_probs=108.1
Q ss_pred hhHHHHHhhhc-------------ccccCC--CC-CchhhhhhC-CCceeeccchHHHHHHHHHHHhhCCCeeEEe-ecH
Q 041265 184 LQQTRLFCKIL-------------DNRMGG--GT-GLNLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAEGLKPFCA-IYS 245 (309)
Q Consensus 184 ~~~~~~~~~~l-------------d~dl~~--~~-~~~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~-~~~ 245 (309)
.+|+++|+++| ++|++. .+ .+.+|.++| |+|++|+||+|++|+++|+|||+.|++||++ +|+
T Consensus 21 ~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~tf~ 100 (342)
T 2bfd_B 21 MNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFA 100 (342)
T ss_dssp ECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHHHHHCCCeeEEEecch
Confidence 46778888777 367652 23 358899999 9999999999999999999999999999996 799
Q ss_pred HHHHhHHHHHHHhhhhCCC---------CeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCC
Q 041265 246 SFLQRCFDQVAHDVDLQKL---------PVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVL 308 (309)
Q Consensus 246 ~F~~ra~dqi~~~~a~~~~---------pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e 308 (309)
+|++|++|||++++++++. ||+++++++|. .+|+|||+.+|+++|+++|||+|++|+|+.|
T Consensus 101 ~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~--~~G~th~~~~d~~~l~~iP~l~V~~Psd~~e 170 (342)
T 2bfd_B 101 DYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV--GHGALYHSQSPEAFFAHCPGIKVVIPRSPFQ 170 (342)
T ss_dssp GGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC--SSCGGGSSCCCHHHHHTSTTCEEECCSSHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC--CCCcchhhHhHHHHHhcCCCcEEEeeCCHHH
Confidence 9999999999999885443 99999998764 4899999999999999999999999999876
No 23
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=99.92 E-value=2.2e-25 Score=209.49 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=105.3
Q ss_pred hHHHHHhhhc-------------ccccCC---CC-CchhhhhhC-CCceeeccchHHHHHHHHHHHhhCCCeeEEe-ecH
Q 041265 185 QQTRLFCKIL-------------DNRMGG---GT-GLNLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAEGLKPFCA-IYS 245 (309)
Q Consensus 185 ~~~~~~~~~l-------------d~dl~~---~~-~~~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~-~~~ 245 (309)
+|+++|+++| ++|++. .+ .+.+|+++| |+|++|+||+|++++++|+|||+.|++|+++ +|+
T Consensus 4 ~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t~~ 83 (324)
T 1w85_B 4 TMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFF 83 (324)
T ss_dssp CHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCSSG
T ss_pred hHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEecch
Confidence 5778888877 377764 22 348899999 9999999999999999999999999999997 799
Q ss_pred HHHHhHHHHHHHhhhh--------CCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCC
Q 041265 246 SFLQRCFDQVAHDVDL--------QKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVL 308 (309)
Q Consensus 246 ~F~~ra~dqi~~~~a~--------~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e 308 (309)
+|++|++|||++++++ +++|++++.++ |..+.+|++|+. +|+++|+++|||+|++|+|+.|
T Consensus 84 ~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~l~V~~Psd~~e 152 (324)
T 1w85_B 84 GFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPF-GGGVHTPELHSD-SLEGLVAQQPGLKVVIPSTPYD 152 (324)
T ss_dssp GGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEE-CSSSCCCTTSSC-CCHHHHTTSTTCEEECCSSHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEec-cCCCCCCCcccc-cHHHHHccCCCCEEEeeCCHHH
Confidence 9999999999999997 79999999885 555656666654 8889999999999999999876
No 24
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=99.91 E-value=2.7e-25 Score=208.82 Aligned_cols=122 Identities=19% Similarity=0.252 Sum_probs=105.1
Q ss_pred hHHHHHhhhc-------------ccccCCC---C-CchhhhhhC-CCceeeccchHHHHHHHHHHHhhCCCeeEEe-ecH
Q 041265 185 QQTRLFCKIL-------------DNRMGGG---T-GLNLFQKHF-PIRCFDVGIAEQHAVTFAAGLAAEGLKPFCA-IYS 245 (309)
Q Consensus 185 ~~~~~~~~~l-------------d~dl~~~---~-~~~~~~~~~-p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~-~~~ 245 (309)
+|+++|+++| ++|++.+ + .+.+|.++| |+|++|+||+|++++++|+|+|+.|++|+++ +|+
T Consensus 5 ~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t~~ 84 (324)
T 1umd_B 5 TMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFA 84 (324)
T ss_dssp CHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred cHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEeccH
Confidence 5777787776 3777642 2 348899999 9999999999999999999999999999997 799
Q ss_pred HHHHhHHHHHHHhhhh--------CCCCeEEEEeCCCccCCCCCCCCChhHHHHHhcCCCcEEEEeCCCCC
Q 041265 246 SFLQRCFDQVAHDVDL--------QKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMKDIKLVL 308 (309)
Q Consensus 246 ~F~~ra~dqi~~~~a~--------~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~~~v~~Ps~~~e 308 (309)
+|++|++|||++++++ +++|++++.++ |..+.+|++|+. +|+++|+++||++|++|+|+.|
T Consensus 85 ~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~~~V~~P~d~~e 153 (324)
T 1umd_B 85 DYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GGGVRGGHHHSQ-SPEAHFVHTAGLKVVAVSTPYD 153 (324)
T ss_dssp GGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CSSSSCGGGSSC-CCHHHHHTSTTCEEEECCSHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CCCCCCCCccch-hHHHHHhcCCCCEEEEeCCHHH
Confidence 9999999999999887 79999999885 555556666655 8899999999999999999876
No 25
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.90 E-value=1.1e-23 Score=203.02 Aligned_cols=133 Identities=18% Similarity=0.141 Sum_probs=111.2
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLC 96 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~ 96 (309)
.++|++|+++|+|+ |+|+|.++++++.+|||++|||++++|.+||+||+|+.++.|+++|++||+|+.++
T Consensus 159 ~~~g~lG~~lp~Av----------G~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~ 228 (400)
T 2bfd_A 159 TISSPLATQIPQAV----------GAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228 (400)
T ss_dssp CCCSSTTTHHHHHH----------HHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTE
T ss_pred ccCccccccccHHH----------HHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeee
Confidence 67899999999999 99999999999999999999999999999999999999999999999999997665
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhc----CCCCCcEEEEEE
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKA----IPDPGAVLIHVI 172 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~----~~~~~P~~I~~~ 172 (309)
+.. .+.. .++...++++|||+++ .|||||++++.++++++++ . ++|++|+++
T Consensus 229 ~~~-------~~~~--------------~~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~--~~P~lIe~~ 284 (400)
T 2bfd_A 229 PTS-------EQYR--------------GDGIAARGPGYGIMSI-RVDGNDVFAVYNATKEARRRAVAE--NQPFLIEAM 284 (400)
T ss_dssp EGG-------GTCS--------------SSTTGGGTGGGTCEEE-EEETTCHHHHHHHHHHHHHHHHHH--TCCEEEEEE
T ss_pred ccc-------ccCC--------------CCCHHHHHHHcCCcEE-EEeCCCHHHHHHHHHHHHHHHHhC--CCCEEEEEE
Confidence 432 1111 1233567899999999 9999999999999987654 4 789999999
Q ss_pred eeeccCCchhh
Q 041265 173 TEKEKAMLPLK 183 (309)
Q Consensus 173 T~kg~G~~~~e 183 (309)
|+|..|+.+.+
T Consensus 285 tyR~~gHs~~D 295 (400)
T 2bfd_A 285 TYRIGHASTSD 295 (400)
T ss_dssp CCCCC--CC--
T ss_pred eeeeCCCCCCC
Confidence 99877766654
No 26
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.90 E-value=1.8e-23 Score=199.69 Aligned_cols=135 Identities=20% Similarity=0.131 Sum_probs=114.8
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLC 96 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~ 96 (309)
.++|++|+++|+|+ |+|+|.++++.+.+|||++|||++++|.+||+||+|+.++.|+++|++||+|+..+
T Consensus 139 ~~~g~lG~~lp~Av----------G~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~ 208 (368)
T 1w85_A 139 PPQIIIGAQYIQAA----------GVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAIST 208 (368)
T ss_dssp CCCCSTTHHHHHHH----------HHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTE
T ss_pred CCccccCccccHHH----------HHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCcccee
Confidence 78899999999999 99999999999999999999999999999999999999999999999999997654
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEee
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI--PDPGAVLIHVITE 174 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~--~~~~P~~I~~~T~ 174 (309)
+.. .+.. .++...++++|||+++ .|||||++++.++++++.+. ++++|++|+++|+
T Consensus 209 ~~~-------~~~~--------------~~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~ 266 (368)
T 1w85_A 209 PVE-------KQTV--------------AKTLAQKAVAAGIPGI-QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCF 266 (368)
T ss_dssp EGG-------GTCS--------------CSCSGGGGGGTTCCEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECC
T ss_pred ccc-------cccC--------------CCCHHHHHHHCCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEee
Confidence 332 0110 1233567899999999 89999999999999877641 1288999999999
Q ss_pred eccCCc-hhh
Q 041265 175 KEKAML-PLK 183 (309)
Q Consensus 175 kg~G~~-~~e 183 (309)
|.+|+. ..+
T Consensus 267 r~~gHs~~~D 276 (368)
T 1w85_A 267 RYGPHTMSGD 276 (368)
T ss_dssp CSSCSCSSCC
T ss_pred ccCCCCCCCC
Confidence 999988 543
No 27
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.89 E-value=1.8e-23 Score=201.94 Aligned_cols=136 Identities=19% Similarity=0.108 Sum_probs=114.0
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLC 96 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~ 96 (309)
..+|++|+++|+|+ |+|+|.++++.+.++||++|||++++|.+||+||+|+.++.|+++|++||+|+.++
T Consensus 178 ~~~g~lG~~lp~Av----------GaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~ 247 (407)
T 1qs0_A 178 TISGNLATQFVQAV----------GWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAIST 247 (407)
T ss_dssp CCCSSSSHHHHHHH----------HHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTE
T ss_pred ccccccccchhHHH----------HHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceee
Confidence 56899999999999 99999999999999999999999999999999999999998999999999997654
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEee
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI--PDPGAVLIHVITE 174 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~--~~~~P~~I~~~T~ 174 (309)
+.. .+.. . .+++..++++|||+++ .|||||+++++++++++.+. +.++|++|+++|+
T Consensus 248 ~~~-------~~~~----~---------~~d~a~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 306 (407)
T 1qs0_A 248 FQA-------IAGG----E---------STTFAGRGVGCGIASL-RVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTY 306 (407)
T ss_dssp EGG-------GGTT----T---------TCCSTHHHHHTTCEEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECC
T ss_pred ccc-------cccC----C---------CCCHHHHHHHcCCeEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEee
Confidence 332 0000 0 1233567899999999 99999999999988876531 1288999999999
Q ss_pred eccCCchhh
Q 041265 175 KEKAMLPLK 183 (309)
Q Consensus 175 kg~G~~~~e 183 (309)
|++|+...+
T Consensus 307 R~~Ghs~~D 315 (407)
T 1qs0_A 307 RAGPHSTSD 315 (407)
T ss_dssp CCSCSSTTC
T ss_pred ccCCcCCCC
Confidence 999987765
No 28
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.89 E-value=3.9e-23 Score=197.35 Aligned_cols=136 Identities=17% Similarity=0.129 Sum_probs=113.4
Q ss_pred CCCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhh
Q 041265 16 AFGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQL 95 (309)
Q Consensus 16 ~~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~ 95 (309)
..++|++|+++|+|+ |+|+|.|+.+.+.+|||++|||++++|.+|||||+|+.++.|+++|++||+|+..
T Consensus 140 ~~~~g~lG~~l~~a~----------G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~ 209 (367)
T 1umd_A 140 FTVASPIASHVPPAA----------GAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAIS 209 (367)
T ss_dssp CCCCSSTTTTHHHHH----------HHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETT
T ss_pred CCCCchhhhhhhHHH----------HHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeec
Confidence 378999999999999 9999999999999999999999999999999999999999899999999988765
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEe
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI--PDPGAVLIHVIT 173 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~--~~~~P~~I~~~T 173 (309)
++.. .+.+ .++...++++|||+++ .|||+|..+++++++.+.+. +.++|++||++|
T Consensus 210 ~~~~-------~~~~--------------~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t 267 (367)
T 1umd_A 210 VDYR-------HQTH--------------SPTIADKAHAFGIPGY-LVDGMDVLASYYVVKEAVERARRGEGPSLVELRV 267 (367)
T ss_dssp EEHH-------HHCS--------------SSCSGGGGGGTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred cChh-------hccC--------------CCCHHHHHHHcCCcEE-EeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 4332 0010 1234567899999999 89999999998877755431 127899999999
Q ss_pred eeccCCchhh
Q 041265 174 EKEKAMLPLK 183 (309)
Q Consensus 174 ~kg~G~~~~e 183 (309)
+|++|+...+
T Consensus 268 ~r~~Ghs~~D 277 (367)
T 1umd_A 268 YRYGPHSSAD 277 (367)
T ss_dssp CCCSCSSTTC
T ss_pred ecCCCCCCCC
Confidence 9999987654
No 29
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.88 E-value=1.3e-22 Score=193.34 Aligned_cols=133 Identities=16% Similarity=0.144 Sum_probs=109.2
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLC 96 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~ 96 (309)
.++|++|.++|+|+ |+|+|.++++.+.++||++|||++++|.+||+||+|+.++.|+++|++||+|+.++
T Consensus 137 ~~~g~~G~~lp~A~----------G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g~~t 206 (365)
T 2ozl_A 137 GGNGIVGAQVPLGA----------GIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGT 206 (365)
T ss_dssp CCCCSTTTHHHHHH----------HHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTE
T ss_pred CCcchhhhhhHHHH----------HHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcccCC
Confidence 34489999999999 99999999999999999999999999999999999999999999999999997765
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC--CCCCcEEEEEEee
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI--PDPGAVLIHVITE 174 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~--~~~~P~~I~~~T~ 174 (309)
+.. .+.. ..++ .. +++||+++ .|||||+++++++++++.+. ++++|++||++|+
T Consensus 207 ~~~-------~~~~-----~~~~---------~~--ra~g~p~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~ 262 (365)
T 2ozl_A 207 SVE-------RAAA-----STDY---------YK--RGDFIPGL-RVDGMDILCVREATRFAAAYCRSGKGPILMELQTY 262 (365)
T ss_dssp EHH-------HHCS-----CCCG---------GG--TTTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECC
T ss_pred Ccc-------cccC-----CCCH---------HH--HhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 432 0000 0111 22 67899999 89999999999998866431 1288999999999
Q ss_pred eccCCchhh
Q 041265 175 KEKAMLPLK 183 (309)
Q Consensus 175 kg~G~~~~e 183 (309)
|..|+...+
T Consensus 263 R~~gHs~~D 271 (365)
T 2ozl_A 263 RYHGHEMSD 271 (365)
T ss_dssp CSSCSSTTC
T ss_pred cCCCCCCCC
Confidence 999876544
No 30
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.41 E-value=2.3e-13 Score=137.41 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=95.6
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~ 96 (309)
+.|++|.++|+|+ |++++. ++.+|||++|||+++.+ +++|+.|+.++.|++ +|.+|++|++++
T Consensus 418 ~~g~~G~~l~~A~----------Gaala~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~ 481 (603)
T 4feg_A 418 LFATMGVGIPGAI----------AAKLNY----PERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIK 481 (603)
T ss_dssp SSCCTTCHHHHHH----------HHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHH
T ss_pred ccccccchhHHHh----------hHHHhC----CCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHH
Confidence 4689999999999 999874 46789999999999876 888999999997655 567777898765
Q ss_pred hhhhcccchhhc--cCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhh--cCCCCCcEEEEEE
Q 041265 97 QEAFSSKDKKQK--FGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVK--AIPDPGAVLIHVI 172 (309)
Q Consensus 97 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~--~~~~~~P~~I~~~ 172 (309)
... +..... .+.... ..++..++++||++++ .|| +.+++.+++++++ +. ++|++||+.
T Consensus 482 ~~~---~~~~~~~~~~~~~~----------~~d~~~~a~a~G~~~~-~v~--~~~~l~~al~~a~~~~~--~gP~lIev~ 543 (603)
T 4feg_A 482 DEQ---EDTNQNDFIGVEFN----------DIDFSKIADGVHMQAF-RVN--KIEQLPDVFEQAKAIAQ--HEPVLIDAV 543 (603)
T ss_dssp HHH---HHHCSSCCCSSBCC----------CCCHHHHHHHTTCEEE-EEC--BGGGHHHHHHHHHHHTT--TSCEEEEEE
T ss_pred HHH---HHhcCCCcccCcCC----------CCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHHhcC--CCcEEEEEE
Confidence 443 100000 000000 1234567899999999 776 6788999999998 66 889999999
Q ss_pred eeeccCCch
Q 041265 173 TEKEKAMLP 181 (309)
Q Consensus 173 T~kg~G~~~ 181 (309)
|.++..+++
T Consensus 544 ~~~~~~~~~ 552 (603)
T 4feg_A 544 ITGDRPLPA 552 (603)
T ss_dssp CCCCCCCCT
T ss_pred eCCCCCCCc
Confidence 977655443
No 31
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.36 E-value=4.5e-13 Score=134.86 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=98.6
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcE-EEEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKAL-KRLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~L-i~i~~nn~~~~~ 95 (309)
.+.|++|.+||+|+ |+|+|. ++.+|||++|||+++.+ +++|+.|+.++.|+ ++|.+||+|++.
T Consensus 423 g~~G~~G~~l~~Ai----------Gaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~ 486 (590)
T 1ybh_A 423 GGLGAMGFGLPAAI----------GASVAN----PDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMV 486 (590)
T ss_dssp CSSCCTTCHHHHHH----------HHHHHC----TTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHH
T ss_pred CCcccccchHHHHH----------HHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHH
Confidence 34599999999999 999985 36789999999999865 78999999999775 566788889887
Q ss_pred hhhhhcccchhhccCCcc--cch-hhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEE
Q 041265 96 CQEAFSSKDKKQKFGGQM--HEI-DAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVI 172 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~ 172 (309)
+... +.. .+... ..+ .......-..++..++++||++++ +|+ +.+++.++++++++. ++|++||++
T Consensus 487 ~~~~---~~~---~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~~--~gp~liev~ 555 (590)
T 1ybh_A 487 MQWE---DRF---YKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAA-RVT--KKADLREAIQTMLDT--PGPYLLDVI 555 (590)
T ss_dssp HHHH---HHH---STTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEE-EEC--BHHHHHHHHHHHHHS--SSCEEEEEE
T ss_pred HHHH---HHh---cCCccccccccccccccCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHHHHHHhC--CCCEEEEEE
Confidence 6543 100 01000 000 000000001244667899999999 775 799999999999876 889999999
Q ss_pred eeeccCC
Q 041265 173 TEKEKAM 179 (309)
Q Consensus 173 T~kg~G~ 179 (309)
|.|++..
T Consensus 556 ~~~~~~~ 562 (590)
T 1ybh_A 556 CPHQEHV 562 (590)
T ss_dssp CCTTCCC
T ss_pred ecCCccc
Confidence 9998764
No 32
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.36 E-value=9.7e-13 Score=131.64 Aligned_cols=131 Identities=16% Similarity=0.104 Sum_probs=98.1
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcE-EEEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKAL-KRLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~L-i~i~~nn~~~~~ 95 (309)
.+.|++|.+||+|+ |+|+|.| +.+.+|||++|||+++.+ +++|+.|..++.|+ ++|.+|++|++.
T Consensus 416 ~g~g~~G~~l~~Ai----------Gaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~ 481 (563)
T 2uz1_A 416 GYLGSMGVGFGTAL----------GAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGAT 481 (563)
T ss_dssp CTTCCTTTHHHHHH----------HHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHH
T ss_pred CCCccccChHHHHH----------HHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHH
Confidence 45799999999999 9999976 456789999999999876 68999999999665 566788889877
Q ss_pred hhhhhcccchhhccCC-cccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEee
Q 041265 96 CQEAFSSKDKKQKFGG-QMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITE 174 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~ 174 (309)
+... +. ..+. ..... ++ -..++..++++|||+++ .| ++.+++.++++++++. ++|++||++|.
T Consensus 482 ~~~~---~~---~~~~~~~~~~-~~----~~~d~~~~a~a~G~~~~-~v--~~~~~l~~al~~a~~~--~gp~liev~~~ 545 (563)
T 2uz1_A 482 LHFQ---QL---AVGPNRVTGT-RL----ENGSYHGVAAAFGADGY-HV--DSVESFSAALAQALAH--NRPACINVAVA 545 (563)
T ss_dssp HHHH---HH---HTCTTCCCSC-BC----CCCCHHHHHHHTTCEEE-EE--CSHHHHHHHHHHHHHS--SSCEEEEEECC
T ss_pred HHHH---HH---hcCCCcccCC-cC----CCCCHHHHHHHcCCeEE-Ee--CCHHHHHHHHHHHHHC--CCCEEEEEEec
Confidence 6543 10 0110 00000 00 01234667899999999 66 4799999999999876 88999999999
Q ss_pred ecc
Q 041265 175 KEK 177 (309)
Q Consensus 175 kg~ 177 (309)
+..
T Consensus 546 ~~~ 548 (563)
T 2uz1_A 546 LDP 548 (563)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 33
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.34 E-value=1.5e-12 Score=130.64 Aligned_cols=128 Identities=14% Similarity=0.097 Sum_probs=96.1
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcE-EEEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKAL-KRLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~L-i~i~~nn~~~~~ 95 (309)
.+.|++|.+||.|+ |+|+|. ++.+|||++|||+++.+ +++|+.|..++.|+ ++|.+|++|++.
T Consensus 433 ~g~g~mG~~l~~Ai----------Gaa~a~----~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~ 496 (573)
T 2iht_A 433 AGCSSFGYGIPAAI----------GAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLI 496 (573)
T ss_dssp SSSCCTTCHHHHHH----------HHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHH
T ss_pred CCCcccccHHHHHH----------HHHHhC----CCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhh
Confidence 35699999999999 999984 36789999999999875 78999999999665 567788889877
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
+... ... .+...... .. .-..++..++++|||+++ .|+ +.+++.++++++++. ++|++||++|.|
T Consensus 497 ~~~~---~~~---~~~~~~~~-~~---~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al~~a~~~--~gp~liev~~~~ 561 (573)
T 2iht_A 497 ELYQ---NIG---HHRSHDPA-VK---FGGVDFVALAEANGVDAT-RAT--NREELLAALRKGAEL--GRPFLIEVPVNY 561 (573)
T ss_dssp HHHH---HHH---HSSCCGGG-TB---CCCCCHHHHHHHTTCEEE-ECC--SHHHHHHHHHHHHTS--SSCEEEEEEBCC
T ss_pred HHHH---HHh---cCCCcCcc-cc---CCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHHHHHHhC--CCCEEEEEECCC
Confidence 6543 100 01000000 00 001345678999999999 675 789999999999875 889999999988
No 34
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.34 E-value=1.4e-12 Score=131.90 Aligned_cols=137 Identities=20% Similarity=0.146 Sum_probs=96.3
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcE-EEEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKAL-KRLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~L-i~i~~nn~~~~~ 95 (309)
...|++|.+||+|+ |+|+|. ++.+|||++|||+++.+ +++|+.|+.++.|+ ++|.+|++|+++
T Consensus 439 g~~G~~G~~l~~Ai----------Gaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~ 502 (616)
T 2pan_A 439 GQAGPLGWTIPAAL----------GVCAAD----PKRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLI 502 (616)
T ss_dssp TTTCCTTCHHHHHH----------HHHHHC----TTCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHH
T ss_pred CCcccccchHHHHH----------HHHHhC----CCCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHH
Confidence 34699999999999 999984 36789999999999875 78999999999665 566788889877
Q ss_pred hhhhhcccchhhccC--CcccchhhhHHh-hhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhc----CCCCCcEE
Q 041265 96 CQEAFSSKDKKQKFG--GQMHEIDAFSRE-IEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKA----IPDPGAVL 168 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~----~~~~~P~~ 168 (309)
+... +....... ...... ..... .-..++..++++||++++ .|+ +.+++.++++++.+ . ++|++
T Consensus 503 ~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~~~~~~--~gp~l 573 (616)
T 2pan_A 503 RQSQ---RAFDMDYCVQLAFENI-NSSEVNGYGVDHVKVAEGLGCKAI-RVF--KPEDIAPAFEQAKALMAQY--RVPVV 573 (616)
T ss_dssp HHHG---GGGTCCCSCBCCCCCT-TCGGGTTCCCCHHHHHHHTTCEEE-EEC--SGGGHHHHHHHHHHHHHHH--CSCEE
T ss_pred HHHH---HHhcCCcccccccccc-ccccCCCCCCCHHHHHHHcCCeEE-EEC--CHHHHHHHHHHHHhhcccC--CCcEE
Confidence 6543 11000000 000000 00000 001345678999999999 665 68888988888765 5 78999
Q ss_pred EEEEeeeccC
Q 041265 169 IHVITEKEKA 178 (309)
Q Consensus 169 I~~~T~kg~G 178 (309)
||++|.|++-
T Consensus 574 Iev~~~~~~~ 583 (616)
T 2pan_A 574 VEVILERVTN 583 (616)
T ss_dssp EEEEBCSCCC
T ss_pred EEEEeccccc
Confidence 9999998873
No 35
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.33 E-value=2.1e-12 Score=128.20 Aligned_cols=125 Identities=22% Similarity=0.203 Sum_probs=93.1
Q ss_pred CCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhhh
Q 041265 20 GHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQE 98 (309)
Q Consensus 20 G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~~ 98 (309)
|++|.++|+|+ |+|+|. ++.+|||++|||+++.+ +|+|+.|..++.|++ +|.+|++|++.+..
T Consensus 401 g~~G~~l~~A~----------G~a~a~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~ 464 (528)
T 1q6z_A 401 GGLGFALPAAI----------GVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWF 464 (528)
T ss_dssp CCTTSHHHHHH----------HHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHH
T ss_pred ccccchHHHHH----------HHHHhC----CCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHH
Confidence 99999999999 999984 35679999999999977 899999999996655 56677789877654
Q ss_pred hhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 99 AFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
. +.. .+..... .++ -..++..++++||++++ +|| +.+++.++++++++. ++|++||++|.+.
T Consensus 465 ~---~~~---~~~~~~~-~~~----~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al~~a~~~--~gp~liev~~~~~ 526 (528)
T 1q6z_A 465 A---GVL---EAENVPG-LDV----PGIDFRALAKGYGVQAL-KAD--NLEQLKGSLQEALSA--KGPVLIEVSTVSP 526 (528)
T ss_dssp H---HHH---TCCSCCS-CBC----CCCCHHHHHHHHTCEEE-EES--SHHHHHHHHHHHHTC--SSCEEEEEEBCC-
T ss_pred H---HHh---cCCCccc-CCC----CCCCHHHHHHHcCCeEE-EeC--CHHHHHHHHHHHHHC--CCcEEEEEEecCC
Confidence 3 100 0000000 000 01234567899999999 777 568999999999876 8899999999763
No 36
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.31 E-value=2.8e-12 Score=128.20 Aligned_cols=131 Identities=14% Similarity=0.057 Sum_probs=99.0
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcE-EEEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKAL-KRLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~L-i~i~~nn~~~~~ 95 (309)
.+.|.+|.+||+|+ |+|+|.+.++++.+|||++|||+++. .+++|+.|..++.|+ ++|.+|++|++.
T Consensus 410 ~~~g~mG~~l~~A~----------Gaala~~~~~~~~~vv~~~GDG~~~~--~~~el~ta~~~~l~~~ivv~nN~~~~~~ 477 (563)
T 2vk8_A 410 VLWGSIGFTTGATL----------GAAFAAEEIDPKKRVILFIGDGSLQL--TVQEISTMIRWGLKPYLFVLNNDGYTIQ 477 (563)
T ss_dssp TTTCCTTHHHHHHH----------HHHHHHHHHCTTCCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHH
T ss_pred cchhhhhhHHHHHH----------HHHHhCcccCCCCCEEEEEcchHhhc--cHHHHHHHHHcCCCcEEEEEECCcchhh
Confidence 45799999999999 99999988888899999999999977 488899999999665 566788889765
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCe---EEecCCCCCHHHHHHHHH-HhhcCCCCCcEEEEE
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLY---YIGPVDGHNLEDLAYVLK-QVKAIPDPGAVLIHV 171 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~---~~~~vDG~D~~~l~~al~-~a~~~~~~~P~~I~~ 171 (309)
+... . ...... + .-..++..++++|||+ ++ +|| +.+++.++++ ++.+. .++|++||+
T Consensus 478 ~~~~---~-----~~~~~~---~----~~~~d~~~~a~a~G~~~~~~~-~v~--~~~el~~al~~~a~~~-~~~p~liev 538 (563)
T 2vk8_A 478 KLIH---G-----PKAQYN---E----IQGWDHLSLLPTFGAKDYETH-RVA--TTGEWDKLTQDKSFND-NSKIRMIEV 538 (563)
T ss_dssp HHHS---C-----TTCGGG---C----CCCCCGGGHHHHTTCSSEEEE-EEC--BHHHHHHHHTCTTTTS-CSSEEEEEE
T ss_pred hhhh---C-----CCCCcc---c----CCCCCHHHHHHHhCCCCCcEE-Eec--CHHHHHHHHHHHHHhC-CCCcEEEEE
Confidence 5321 0 000000 0 0013456788999998 87 676 6899999999 77653 157999999
Q ss_pred EeeeccC
Q 041265 172 ITEKEKA 178 (309)
Q Consensus 172 ~T~kg~G 178 (309)
+|.+..-
T Consensus 539 ~~~~~~~ 545 (563)
T 2vk8_A 539 MLPVFDA 545 (563)
T ss_dssp ECCTTCC
T ss_pred EeCcccc
Confidence 9997653
No 37
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.31 E-value=2.3e-12 Score=129.11 Aligned_cols=129 Identities=13% Similarity=0.184 Sum_probs=96.8
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~ 95 (309)
.+.|++|.+||.|+ |+|+|. ++.+|||++|||+++.+ +++|+.|..++.|++ +|.+|++|++.
T Consensus 417 ~g~g~mG~~l~~Ai----------Gaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~ 480 (566)
T 1ozh_A 417 NGQQTMGVALPWAI----------GAWLVN----PERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMV 480 (566)
T ss_dssp CTTCCTTCHHHHHH----------HHHHHS----TTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHH
T ss_pred CCcccccchHHHHH----------HHHHhC----CCCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHH
Confidence 45799999999999 999984 36789999999999874 788999999997754 66788889877
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
+... .. ..+.... .+. -..++..++++|||+++ .|+ +.+++.++++++.+. ++|++||++|.|
T Consensus 481 ~~~~---~~---~~~~~~~--~~~----~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~~--~gp~liev~~~~ 543 (566)
T 1ozh_A 481 AIQE---EK---KYQRLSG--VEF----GPMDFKAYAESFGAKGF-AVE--SAEALEPTLRAAMDV--DGPAVVAIPVDY 543 (566)
T ss_dssp HHHH---HH---HHSSCCS--CBC----CCCCHHHHHHTTTSEEE-ECC--SGGGHHHHHHHHHHS--SSCEEEEEEBCC
T ss_pred HHHH---HH---hcCCCcc--CcC----CCCCHHHHHHHcCCeEE-EeC--CHHHHHHHHHHHHhC--CCCEEEEEEeCC
Confidence 6443 10 0011100 000 01244667899999999 776 678999999999876 889999999998
Q ss_pred ccC
Q 041265 176 EKA 178 (309)
Q Consensus 176 g~G 178 (309)
...
T Consensus 544 ~~~ 546 (566)
T 1ozh_A 544 RDN 546 (566)
T ss_dssp TTH
T ss_pred CcC
Confidence 764
No 38
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.30 E-value=1.7e-12 Score=130.63 Aligned_cols=131 Identities=16% Similarity=0.184 Sum_probs=98.2
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcE-EEEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKAL-KRLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~L-i~i~~nn~~~~~~ 96 (309)
+.|++|.+||.|+ |+|+|. ++.+|||++|||+++.+ +|+|+.|..++.|+ ++|.+|++|++.+
T Consensus 422 g~g~mG~~l~~Ai----------Gaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~ 485 (589)
T 2pgn_A 422 AEGILGCGFPMAL----------GAQLAE----PNSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANW 485 (589)
T ss_dssp TTCCTTCHHHHHH----------HHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHH
T ss_pred CcchhhhHHHHHH----------HHHHhC----CCCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccch
Confidence 4699999999999 999984 36789999999999876 69999999999664 5667888898776
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
... .. ..+.... ..+ -..++..++++|||+++ .|+ +.+++.++++++.+. ++|++||++|.+.
T Consensus 486 ~~~---~~---~~~~~~~--~~~----~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~~--~gp~liev~~~~~ 548 (589)
T 2pgn_A 486 TLM---NH---QFGQNNW--TEF----MNPDWVGIAKAFGAYGE-SVR--ETGDIAGALQRAIDS--GKPALIEIPVSKT 548 (589)
T ss_dssp HHH---HH---HHSSCCS--CBC----CCCCHHHHHHHHTCEEE-ECT--TTCCHHHHHHHHHHH--CSCEEEEEECCSS
T ss_pred HHH---Hh---hcCCCcc--ccC----CCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHhC--CCCEEEEEEecCC
Confidence 543 10 0011100 000 02345667899999999 776 567888999888765 8899999999998
Q ss_pred cCCch
Q 041265 177 KAMLP 181 (309)
Q Consensus 177 ~G~~~ 181 (309)
....+
T Consensus 549 ~~~~~ 553 (589)
T 2pgn_A 549 QGLAS 553 (589)
T ss_dssp SSTTT
T ss_pred CCcCc
Confidence 87554
No 39
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.30 E-value=3.8e-12 Score=130.25 Aligned_cols=131 Identities=18% Similarity=0.179 Sum_probs=97.4
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcE-EEEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKAL-KRLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~L-i~i~~nn~~~~~ 95 (309)
.+.|.+|.+||+|+ |+|+|. .+..|||++|||+++. .+++|+.|..++.|+ ++|.+|++|+++
T Consensus 510 g~~G~mG~~lpaAi----------GaalA~----p~~~Vv~i~GDGsf~~--~~~eL~ta~~~~l~v~ivV~NN~~~g~~ 573 (677)
T 1t9b_A 510 GGLGTMGYGLPAAI----------GAQVAK----PESLVIDIDGDASFNM--TLTELSSAVQAGTPVKILILNNEEQGMV 573 (677)
T ss_dssp CSSCCTTCHHHHHH----------HHHHHC----TTSEEEEEEEHHHHHH--HGGGHHHHHHHTCCCEEEEEECSSCHHH
T ss_pred CCcchhhchHHHHH----------HHHHhC----CCCeEEEEEeehHHhc--cHHHHHHHHHhCCCeEEEEEeCCCchhh
Confidence 34589999999999 999984 5678999999999986 477799999999665 567788889876
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
+... +.. .+...... . .-.+++..++++||++++ .| ++.+++.++++++.+. ++|++||++|.|
T Consensus 574 ~~~~---~~~---~~~~~~~~-~----~~~~d~~~la~a~G~~~~-~v--~~~~el~~al~~a~~~--~gp~lIev~~~~ 637 (677)
T 1t9b_A 574 TQWQ---SLF---YEHRYSHT-H----QLNPDFIKLAEAMGLKGL-RV--KKQEELDAKLKEFVST--KGPVLLEVEVDK 637 (677)
T ss_dssp HHHH---HHH---STTCCCSC-C----CCCCCHHHHHHHTTCEEE-EE--CSHHHHHHHHHHHHHC--SSCEEEEEEBCS
T ss_pred hhhh---hhh---cCCCcccC-c----CCCCCHHHHHHHcCCeEE-EE--CCHHHHHHHHHHHHHC--CCcEEEEEEecC
Confidence 6543 100 01000000 0 001244667899999999 66 5799999999999876 889999999999
Q ss_pred ccCC
Q 041265 176 EKAM 179 (309)
Q Consensus 176 g~G~ 179 (309)
++..
T Consensus 638 ~~~~ 641 (677)
T 1t9b_A 638 KVPV 641 (677)
T ss_dssp SCCC
T ss_pred Cccc
Confidence 8753
No 40
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.27 E-value=8.8e-12 Score=124.29 Aligned_cols=126 Identities=19% Similarity=0.180 Sum_probs=94.8
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCc-EEEEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKA-LKRLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~-Li~i~~nn~~~~~ 95 (309)
.+.|++|.+||+|+ |+|+|. ++.+|||++|||+++. .+++|..|..++.| +++|.+|++|++.
T Consensus 405 ~~~g~mG~~l~~A~----------G~a~a~----~~~~vv~~~GDG~~~~--~~~el~ta~~~~l~~~ivv~nN~~~~~~ 468 (552)
T 1ovm_A 405 PLWGSIGYTLAAAF----------GAQTAC----PNRRVIVLTGDGAAQL--TIQELGSMLRDKQHPIILVLNNEGYTVE 468 (552)
T ss_dssp TTTCCTTHHHHHHH----------HHHHHC----TTSCEEEEEEHHHHHH--HTTHHHHHHHTTCCCEEEEEESSSCHHH
T ss_pred hhhHhhhhHHHHHH----------HHHHhC----CCCcEEEEECchHHHh--HHHHHHHHHHhCCCCEEEEEECCCCeEE
Confidence 45899999999999 999984 3678999999999974 58889999999966 5566788889765
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCC----eEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGL----YYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~----~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
+... +.. ..+. ..-..++..++++||| +++ .|+ +.+++.++++++++. ++|++||+
T Consensus 469 ~~~~----------~~~----~~~~-~~~~~d~~~~a~a~G~~~~~~~~-~v~--~~~~l~~al~~a~~~--~gp~liev 528 (552)
T 1ovm_A 469 RAIH----------GAE----QRYN-DIALWNWTHIPQALSLDPQSECW-RVS--EAEQLADVLEKVAHH--ERLSLIEV 528 (552)
T ss_dssp HHHS----------CTT----CGGG-CCCCCCGGGSTTTSCSSCCEEEE-EEC--BHHHHHHHHHHHTTC--SSEEEEEE
T ss_pred Eeec----------cCC----CCcc-cCCCCCHHHHHHHhCCCcCCCEE-EeC--CHHHHHHHHHHHHhC--CCCEEEEE
Confidence 4321 000 0000 0011345678899999 887 665 789999999998876 88999999
Q ss_pred EeeeccC
Q 041265 172 ITEKEKA 178 (309)
Q Consensus 172 ~T~kg~G 178 (309)
+|.+..-
T Consensus 529 ~~~~~~~ 535 (552)
T 1ovm_A 529 MLPKADI 535 (552)
T ss_dssp ECCTTCC
T ss_pred EcCcccC
Confidence 9997543
No 41
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.26 E-value=5.3e-12 Score=126.38 Aligned_cols=125 Identities=14% Similarity=0.180 Sum_probs=95.2
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCc-EEEEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKA-LKRLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~-Li~i~~nn~~~~~ 95 (309)
.+.|.+|.+||+|+ |+|+|. ++.+|||++|||+++. .+++|+.|+.++.| +++|.+|++|++.
T Consensus 406 ~~~g~mG~~l~~A~----------G~ala~----~~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~~ 469 (566)
T 2vbi_A 406 MQWGHIGWSVPSAF----------GNAMGS----QDRQHVVMVGDGSFQL--TAQEVAQMVRYELPVIIFLINNRGYVIE 469 (566)
T ss_dssp TTTCCTTTHHHHHH----------HHHHTC----TTSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHH
T ss_pred CcccchhhHHHHHH----------HHHHhC----CCCcEEEEEcchHHHh--hHHHHHHHHHhCCCcEEEEEECCcceEE
Confidence 35799999999999 999984 4678999999999987 47889999999966 5567788889765
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCC-----eEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEE
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGL-----YYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIH 170 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~-----~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~ 170 (309)
+... +. .... .-..++..++++||+ +++ .|+ +.+++.++++++++.. ++|++||
T Consensus 470 ~~~~---~~-------~~~~-------~~~~d~~~~a~a~G~~~~~~~~~-~v~--~~~el~~al~~a~~~~-~gp~lie 528 (566)
T 2vbi_A 470 IAIH---DG-------PYNY-------IKNWDYAGLMEVFNAGEGHGLGL-KAT--TPKELTEAIARAKANT-RGPTLIE 528 (566)
T ss_dssp HTTS---CC-------GGGC-------CCCCCTTTHHHHHHTTTCCCEEE-EEC--SHHHHHHHHHHHHHCC-SSCEEEE
T ss_pred Eeec---cC-------CccC-------CCCCCHHHHHHHcCCCCCCccEE-EeC--CHHHHHHHHHHHHhcC-CCcEEEE
Confidence 4332 00 0000 001244667899999 998 665 7899999999988642 6799999
Q ss_pred EEeeeccC
Q 041265 171 VITEKEKA 178 (309)
Q Consensus 171 ~~T~kg~G 178 (309)
++|.|..-
T Consensus 529 v~~~~~~~ 536 (566)
T 2vbi_A 529 CQIDRTDC 536 (566)
T ss_dssp EECCTTCC
T ss_pred EEeCcccC
Confidence 99998765
No 42
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.25 E-value=5.8e-12 Score=126.16 Aligned_cols=124 Identities=17% Similarity=0.178 Sum_probs=95.3
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCc-EEEEEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKA-LKRLHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~-Li~i~~nn~~~~~~ 96 (309)
+.|.+|.|||+|+ |+|+|. ++.+|||++|||+++ +.+++|..|..++.| +++|.+|++|+.++
T Consensus 420 ~~g~mG~~l~~A~----------G~ala~----~~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~ 483 (565)
T 2nxw_A 420 YYAGMGFGVPAGI----------GAQCVS----GGKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLR 483 (565)
T ss_dssp TTCCTTCHHHHHH----------HHHHHT----TTCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHH
T ss_pred ccccccccchHHH----------HHHHhC----CCCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEe
Confidence 4689999999999 999985 356899999999998 889999999999966 45667888898765
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcE-EEEEEeee
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAV-LIHVITEK 175 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~-~I~~~T~k 175 (309)
... . ....... -..++..++++|||+++ .|| +.+++.++++++.+. ++|+ +||++|.+
T Consensus 484 ~~~---~------~~~~~~~-------~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~~--~gp~~liev~~~~ 542 (565)
T 2nxw_A 484 TFQ---P------ESAFNDL-------DDWRFADMAAGMGGDGV-RVR--TRAELKAALDKAFAT--RGRFQLIEAMIPR 542 (565)
T ss_dssp HHC---T------TCGGGBC-------CCCCHHHHTGGGTSEEE-EEC--BHHHHHHHHHHHHHC--CSSCEEEEEECCT
T ss_pred eec---c------cCCCCcC-------CCCCHHHHHHHcCCCEE-EeC--CHHHHHHHHHHHHhc--CCCeEEEEEEccc
Confidence 432 0 0000000 01244667899999999 775 689999999999876 7898 99999997
Q ss_pred ccC
Q 041265 176 EKA 178 (309)
Q Consensus 176 g~G 178 (309)
..-
T Consensus 543 ~~~ 545 (565)
T 2nxw_A 543 GVL 545 (565)
T ss_dssp TCC
T ss_pred ccC
Confidence 653
No 43
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.24 E-value=6e-12 Score=125.58 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=93.5
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcE-EEEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKAL-KRLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~L-i~i~~nn~~~~~ 95 (309)
.+.|++|.++|+|+ |+|++. ++.+|||++|||+++.+ +++|+.|..++.|+ ++|.+|++|+.+
T Consensus 403 ~~~g~mG~~l~~Ai----------Gaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~ 466 (549)
T 3eya_A 403 FNHGSMANAMPQAL----------GAQATE----PERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFV 466 (549)
T ss_dssp TTTCCTTCHHHHHH----------HHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC
T ss_pred CCCchhhhHHHHHH----------HHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHH
Confidence 35689999999999 999984 36789999999999654 78999999999665 567888888765
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
+... .. .+. .......-.+++..++++||++++ .| ++.+++.++++++++. ++|++||++|.+
T Consensus 467 ~~~~---~~----~~~-----~~~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~~l~~al~~a~~~--~gp~liev~~~~ 529 (549)
T 3eya_A 467 AMEM---KA----GGY-----LTDGTELHDTNFARIAEACGITGI-RV--EKASEVDEALQRAFSI--DGPVLVDVVVAK 529 (549)
T ss_dssp ------------------------CCBCCCCCHHHHHHHTTSEEE-EE--CSGGGHHHHHHHHHHS--SSCEEEEEEBCC
T ss_pred HHHH---Hh----cCC-----CCcCCcCCCCCHHHHHHHcCCcEE-Ee--CCHHHHHHHHHHHHhC--CCCEEEEEEecc
Confidence 4332 00 000 000000001344667899999998 66 5788999999999886 889999999988
Q ss_pred ccCC
Q 041265 176 EKAM 179 (309)
Q Consensus 176 g~G~ 179 (309)
..-.
T Consensus 530 ~~~~ 533 (549)
T 3eya_A 530 EELA 533 (549)
T ss_dssp CCSC
T ss_pred cccc
Confidence 6654
No 44
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.21 E-value=2e-11 Score=122.94 Aligned_cols=129 Identities=20% Similarity=0.236 Sum_probs=94.8
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcE-EEEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKAL-KRLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~L-i~i~~nn~~~~~ 95 (309)
.+.|.+|.+||+|+ |+|+|. ++.+|||++|||+++.+ +++|+.|+.++.|+ ++|.+|++|++.
T Consensus 410 ~~~g~mG~~l~~Ai----------Gaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~ 473 (590)
T 1v5e_A 410 PLFATMGIAIPGGL----------GAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFI 473 (590)
T ss_dssp CSSCCTTCHHHHHH----------HHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTG
T ss_pred CCCCcccChHHHHH----------HHHHhC----CCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHH
Confidence 35799999999999 999984 36789999999999876 69999999999665 566788889776
Q ss_pred hhhhhcccch-hhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC-CCCCcEEEEEEe
Q 041265 96 CQEAFSSKDK-KQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI-PDPGAVLIHVIT 173 (309)
Q Consensus 96 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~-~~~~P~~I~~~T 173 (309)
+... ... ....+.... ..++..++++|||+++ .|+ +.+++.++++++.+. ..++|++||++|
T Consensus 474 ~~~q---~~~~~~~~~~~~~----------~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~~~~~~gp~liev~~ 537 (590)
T 1v5e_A 474 KNKY---EDTNKNLFGVDFT----------DVDYAKIAEAQGAKGF-TVS--RIEDMDRVMAEAVAANKAGHTVVIDCKI 537 (590)
T ss_dssp GGTT---SSSCCSCCCCCCC----------CCCHHHHHHHTTSEEE-EEC--BHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHH---HHhcCCCccccCC----------CCCHHHHHHHcCCEEE-EEC--CHHHHHHHHHHHHHhcCCCCCEEEEEEe
Confidence 5443 100 000000000 1344667899999999 775 689999999877642 016799999999
Q ss_pred eecc
Q 041265 174 EKEK 177 (309)
Q Consensus 174 ~kg~ 177 (309)
.+..
T Consensus 538 ~~~~ 541 (590)
T 1v5e_A 538 TQDR 541 (590)
T ss_dssp CSCC
T ss_pred cccc
Confidence 9876
No 45
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.19 E-value=2e-11 Score=122.25 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=94.2
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcE-EEEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKAL-KRLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~L-i~i~~nn~~~~~ 95 (309)
.+.|.+|.+||+|+ |+|+|. ++.+|||++|||+++. .+++|+.|..++.|+ ++|.+||+|++.
T Consensus 410 ~~~g~~G~~l~~A~----------G~ala~----~~~~vv~i~GDGs~~~--~~~el~ta~~~~l~~~ivv~NN~~~~~~ 473 (568)
T 2wvg_A 410 MQWGHIGWSVPAAF----------GYAVGA----PERRNILMVGDGSFQL--TAQEVAQMVRLKLPVIIFLINNYGYTIE 473 (568)
T ss_dssp TTTCCTTTHHHHHH----------HHHHHC----TTSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHH
T ss_pred CCcchhhhHHHHHH----------HHHHhC----CCCcEEEEEcChhHhc--cHHHHHHHHHcCCCcEEEEEECCcceEe
Confidence 35789999999999 999984 3678999999999986 588899999999665 566788888765
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCC---------eEEecCCCCCHHHHHHHHHHhhcCCCCCc
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGL---------YYIGPVDGHNLEDLAYVLKQVKAIPDPGA 166 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~---------~~~~~vDG~D~~~l~~al~~a~~~~~~~P 166 (309)
+... +.. .. ... ..++..++++||+ .+. .| ++.+++.++++++.+.. ++|
T Consensus 474 ~~~~---~~~---~~-~~~----------~~d~~~~a~a~G~~~~~~~~~~~~~-~v--~~~~el~~al~~a~~~~-~gp 532 (568)
T 2wvg_A 474 VMIH---DGP---YN-NIK----------NWDYAGLMEVFNGNGGYDSGAGKGL-KA--KTGGELAEAIKVALANT-DGP 532 (568)
T ss_dssp HTTS---CCG---GG-CCC----------CCCHHHHHHHHHCTTSSSCCCCEEE-EE--SBHHHHHHHHHHHHHCC-SSC
T ss_pred eeec---cCC---Cc-CCC----------CCCHHHHHHHhCCCcccccCCcceE-Ee--CCHHHHHHHHHHHHhcC-CCc
Confidence 4332 000 00 000 1234567899999 887 66 47899999999987632 679
Q ss_pred EEEEEEeeeccC
Q 041265 167 VLIHVITEKEKA 178 (309)
Q Consensus 167 ~~I~~~T~kg~G 178 (309)
++||++|.|..-
T Consensus 533 ~liev~~~~~~~ 544 (568)
T 2wvg_A 533 TLIECFIGREDC 544 (568)
T ss_dssp EEEEEECCTTCC
T ss_pred EEEEEEcCcccc
Confidence 999999998765
No 46
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.19 E-value=4e-11 Score=120.06 Aligned_cols=126 Identities=15% Similarity=0.092 Sum_probs=93.9
Q ss_pred CCcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcE-EEEEeCcchhhh
Q 041265 17 FGVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKAL-KRLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~L-i~i~~nn~~~~~ 95 (309)
.+.|.+|.+||+|+ |+|+|. ++.+|||++|||+++. .+++|+.|..++.|+ ++|.+|++|++.
T Consensus 422 ~~~g~mG~~l~~A~----------Gaala~----~~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~~ 485 (570)
T 2vbf_A 422 PLWGSIGYTFPAAL----------GSQIAD----KESRHLLFIGDGSLQL--TVQELGLSIREKLNPICFIINNDGYTVE 485 (570)
T ss_dssp TTTCCTTTHHHHHH----------HHHHHC----TTSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHH
T ss_pred ccchhhhhhHHHHH----------HHHHhC----CCCcEEEEEcchhhhc--CHHHHHHHHHcCCCCEEEEEECCchHHH
Confidence 36799999999999 999984 3678999999999987 478899999999664 566788889765
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCe-----EEecCCCCCHHHHHHHHHH-hhcCCCCCcEEE
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLY-----YIGPVDGHNLEDLAYVLKQ-VKAIPDPGAVLI 169 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~-----~~~~vDG~D~~~l~~al~~-a~~~~~~~P~~I 169 (309)
+... ........ .-..++..++++||++ ++ .| ++.+++.+++++ +++. ++|++|
T Consensus 486 ~~~~--------~~~~~~~~-------~~~~d~~~~a~a~G~~~~~~~~~-~v--~~~~el~~al~~a~~~~--~~p~li 545 (570)
T 2vbf_A 486 REIH--------GPTQSYND-------IPMWNYSKLPETFGATEDRVVSK-IV--RTENEFVSVMKEAQADV--NRMYWI 545 (570)
T ss_dssp HHHS--------CTTCGGGC-------CCCCCGGGHHHHTTCCTTTEEEE-EE--CBHHHHHHHHHHHHHCT--TSEEEE
T ss_pred HHHh--------ccCCCccC-------CCCCCHHHHHHHcCCCcCCcceE-Ee--cCHHHHHHHHHHHHhcC--CCcEEE
Confidence 5321 00000000 0013456788999998 66 66 479999999998 4655 789999
Q ss_pred EEEeeeccC
Q 041265 170 HVITEKEKA 178 (309)
Q Consensus 170 ~~~T~kg~G 178 (309)
|++|.+..-
T Consensus 546 ev~~~~~~~ 554 (570)
T 2vbf_A 546 ELVLEKEDA 554 (570)
T ss_dssp EEECCTTCC
T ss_pred EEEcCcccc
Confidence 999997654
No 47
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.13 E-value=3.1e-11 Score=121.84 Aligned_cols=129 Identities=14% Similarity=0.071 Sum_probs=92.7
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~ 97 (309)
.|.+|.+||.|+ |+|+|. +.+|||++|||+++.+ +++|+.|..++.|++ +|.+|++|++.+.
T Consensus 454 ~~~ig~~l~~Ai----------Gaala~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~ 516 (604)
T 2x7j_A 454 ANGIDGVVSSAM----------GVCEGT-----KAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSF 516 (604)
T ss_dssp TCCSSSHHHHHH----------HHHHHH-----TSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGG
T ss_pred cCCcCcHHHHHH----------HHHhcC-----CCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCccccc
Confidence 467889999999 999983 5689999999999876 567999999997765 5678888876432
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeecc
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEK 177 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~ 177 (309)
.. . .+.. ...+.+.......++..++++||++++ .|+ +.+++.++++++.+. ++|++||++|.+..
T Consensus 517 ~~---~---~q~~---~~~~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~~--~gp~liev~~~~~~ 582 (604)
T 2x7j_A 517 LP---Q---ASEK---THFEDLFGTPTGLDFKHAAALYGGTYS-CPA--SWDEFKTAYAPQADK--PGLHLIEIKTDRQS 582 (604)
T ss_dssp SG---G---GSCH---HHHHHHTTCCCCCCTHHHHHHTTCEEE-CCS--SHHHHHHHCCCCCSS--CCEEEEEEECCHHH
T ss_pred CC---C---Cccc---hhhHhhccCCCCCCHHHHHHHcCCeEE-ecC--CHHHHHHHHHHHHhC--CCCEEEEEECCccc
Confidence 21 0 0000 000011000012356778999999999 775 689999999988765 88999999998765
Q ss_pred C
Q 041265 178 A 178 (309)
Q Consensus 178 G 178 (309)
.
T Consensus 583 ~ 583 (604)
T 2x7j_A 583 R 583 (604)
T ss_dssp H
T ss_pred c
Confidence 3
No 48
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.05 E-value=1.5e-10 Score=115.95 Aligned_cols=126 Identities=14% Similarity=0.090 Sum_probs=90.2
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEE-EEeCcchhhhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKR-LHSNPQFRQLC 96 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~-i~~nn~~~~~~ 96 (309)
+.|.+|.|+|+|+ |+|++ .+.+|+|++|||+++ +.+++|+.|..++.|+++ |.+|++|....
T Consensus 424 ~~g~~G~~l~~Ai----------Gaala-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~ 486 (568)
T 2c31_A 424 TWGVMGIGMGYCV----------AAAAV-----TGKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGN 486 (568)
T ss_dssp TTTCSSCHHHHHH----------HHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCSC
T ss_pred CCccccccHHHHH----------HHHhC-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHH
Confidence 5689999999999 99997 356899999999996 468889999999977665 45665542211
Q ss_pred hhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeec
Q 041265 97 QEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKE 176 (309)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg 176 (309)
... ..+....... .-..++..++++||++++ .|+ +.+++.++++++.+. ++|++||++|.+.
T Consensus 487 ~~~--------~~~~~~~~~~-----~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~~--~~p~liev~~~~~ 548 (568)
T 2c31_A 487 EAD--------PQPGVISCTR-----LTRGRYDMMMEAFGGKGY-VAN--TPAELKAALEEAVAS--GKPCLINAMIDPD 548 (568)
T ss_dssp CCC--------SBTTBCCTTB-----CCCCCHHHHHHTTTCEEE-EES--SHHHHHHHHHHHHHH--TSCEEEEEEBCTT
T ss_pred HHH--------hhcCCcccCc-----CCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHHHHHHhC--CCCEEEEEEeccc
Confidence 110 0010000000 002345667899999998 664 799999999998865 8899999999976
Q ss_pred cC
Q 041265 177 KA 178 (309)
Q Consensus 177 ~G 178 (309)
..
T Consensus 549 ~~ 550 (568)
T 2c31_A 549 AG 550 (568)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 49
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.05 E-value=1.9e-10 Score=115.02 Aligned_cols=127 Identities=13% Similarity=0.058 Sum_probs=90.1
Q ss_pred CcCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEE-EEeCcch-hhh
Q 041265 18 GVGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKR-LHSNPQF-RQL 95 (309)
Q Consensus 18 ~~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~-i~~nn~~-~~~ 95 (309)
..|++|.+||+|+ |+|++ .+.+|+|++|||+++. .++.|..|..++.|+++ |.+|++| ...
T Consensus 419 ~~g~~G~~l~~Ai----------Gaa~a-----~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~ivv~NN~~~~~~~ 481 (564)
T 2q28_A 419 TWGVMGIGMGYAI----------GASVT-----SGSPVVAIEGDSAFGF--SGMEIETICRYNLPVTIVIFNNGGIYRGD 481 (564)
T ss_dssp TTTCTTCHHHHHH----------HHHHH-----HCSCEEEEEEHHHHHT--TGGGHHHHHHTTCCEEEEEEECSBSSCSC
T ss_pred CCCcccchHHHHH----------HHhhc-----CCCcEEEEEcchHhhc--cHHHHHHHHHhCCCeEEEEEeCchhHHHH
Confidence 5699999999999 99997 3678999999999965 56889999999977654 5666653 321
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
. .. ...+...... ... -..++..++++||++++ .| ++.+++.++++++.+. ++|++||++|.+
T Consensus 482 ~-~~-------~~~~~~~~~~-~~~---~~~d~~~~a~a~G~~~~-~v--~~~~el~~al~~a~~~--~~p~liev~~~~ 544 (564)
T 2q28_A 482 G-VD-------LSGAGAPSPT-DLL---HHARYDKLMDAFRGVGY-NV--TTTDELRHALTTGIQS--RKPTIINVVIDP 544 (564)
T ss_dssp C-CC-------TTSSCCCCTT-BCC---TTCCGGGGGGGGTCEEE-EE--CSHHHHHHHHHHHHHH--TSCEEEEEEBCT
T ss_pred H-HH-------HhccCCcccc-ccC---CCCCHHHHHHHcCCeEE-Ee--CCHHHHHHHHHHHHhC--CCCEEEEEEecc
Confidence 1 00 0000000000 000 01355778999999998 66 4799999999998865 789999999987
Q ss_pred ccC
Q 041265 176 EKA 178 (309)
Q Consensus 176 g~G 178 (309)
...
T Consensus 545 ~~~ 547 (564)
T 2q28_A 545 AAG 547 (564)
T ss_dssp TSS
T ss_pred ccC
Confidence 653
No 50
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=98.97 E-value=4.8e-10 Score=112.00 Aligned_cols=125 Identities=10% Similarity=0.101 Sum_probs=82.8
Q ss_pred cCCchhhHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEE-EEeCcchhhhhh
Q 041265 19 VGHSSTSISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKR-LHSNPQFRQLCQ 97 (309)
Q Consensus 19 ~G~~g~gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~-i~~nn~~~~~~~ 97 (309)
.|..|. ||+|+ |+|++. +.+|+|++|||+++ +...+|+.|..++.|+++ |.+|+.|++...
T Consensus 416 ~g~~G~-l~~A~----------Gaa~a~-----~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~~ 477 (556)
T 3hww_A 416 SGIDGL-LSTAA----------GVQRAS-----GKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQIFSL 477 (556)
T ss_dssp CCSSSH-HHHHH----------HHHHHH-----CCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC------
T ss_pred cccccH-HHHHH----------HHHhcC-----CCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCCcccC
Confidence 344555 99999 999982 56799999999995 456779999999977765 566666654332
Q ss_pred hhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeeecc
Q 041265 98 EAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEKEK 177 (309)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~ 177 (309)
.. +..... +.+....-.+++..+.++||++++ .|+ +.+++.++++++++. ++|++||++|.+..
T Consensus 478 ~~--------~~~~~~---~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al~~a~~~--~gp~liev~~~~~~ 541 (556)
T 3hww_A 478 LP--------TPQSER---ERFYLMPQNVHFEHAAAMFELKYH-RPQ--NWQELETAFADAWRT--PTTTVIEMVVNDTD 541 (556)
T ss_dssp ----------------------CCCCCCCCSHHHHHHTTCEEE-CCS--SHHHHHHHHHHHTTS--SSEEEEEEECCSSH
T ss_pred CC--------CcchhH---HHhccCCCCCCHHHHHHHcCCcEE-ecC--CHHHHHHHHHHHHhC--CCCEEEEEECCccc
Confidence 11 000000 000000012345678899999998 774 778999999999876 88999999998754
No 51
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=98.93 E-value=8e-10 Score=110.88 Aligned_cols=128 Identities=12% Similarity=0.043 Sum_probs=78.8
Q ss_pred cCCchh--hHhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEE-EEeCcchhhh
Q 041265 19 VGHSST--SISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKR-LHSNPQFRQL 95 (309)
Q Consensus 19 ~G~~g~--gls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~-i~~nn~~~~~ 95 (309)
.|.+|. +||.|+ |+|++ +.+|+|++|||+++ +.+++|+.|..++.|+++ |.+|++|++.
T Consensus 433 ~G~~G~~g~l~~Ai----------Gaa~~------~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~g~~ 494 (578)
T 3lq1_A 433 RGANGIDGVVSSAL----------GASVV------FQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGGGIF 494 (578)
T ss_dssp CSSCCSSSHHHHHH----------HHTTT------SSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC-----
T ss_pred CCccccccHHHHHH----------HHhcC------CCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcCccc
Confidence 455554 699999 88742 67799999999996 557889999999988764 5666678765
Q ss_pred hhhhhcccchhhccCCcccchhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 96 CQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
+... . .+..... ..........++..+.++||++++ .|+ +.+++.++++++++. ++|++||+.|.+
T Consensus 495 ~~~~----~--~~~~~~~---~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~al~~a~~~--~gp~liev~~~~ 560 (578)
T 3lq1_A 495 SFLP----Q--ANEPKYF---ESLFGTSTELDFRFAAAFYDADYH-EAK--SVDELEEAIDKASYH--KGLDIIEVKTNR 560 (578)
T ss_dssp -----------------------------CCCTHHHHHHTTCEEE-ECC--SHHHHHHHHHHHTTS--SSEEEEEEC---
T ss_pred cccc----c--ccccchh---hhhccCCCCCCHHHHHHHcCCceE-ecC--CHHHHHHHHHHHHhC--CCCEEEEEECCc
Confidence 4321 0 0000000 000000012456778999999998 774 889999999999876 889999999987
Q ss_pred ccC
Q 041265 176 EKA 178 (309)
Q Consensus 176 g~G 178 (309)
..-
T Consensus 561 ~~~ 563 (578)
T 3lq1_A 561 HEN 563 (578)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 52
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=98.18 E-value=9.2e-07 Score=84.80 Aligned_cols=96 Identities=10% Similarity=0.042 Sum_probs=61.3
Q ss_pred CCCceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCC--CCCCCCChhH
Q 041265 211 FPIRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGA--DGPTHCGAFD 288 (309)
Q Consensus 211 ~p~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~--~G~tH~~~~d 288 (309)
+..+++.+. +|++.+++|.|+|+.|.||++.+..+++.+++|||.+. +..+.|++++....+..+. ...+||+...
T Consensus 63 ~g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~~ts~~G~~~~~d~l~~a-a~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~ 140 (395)
T 1yd7_A 63 VDGVVIQME-DEIASIAAAIGASWAGAKAMTATSGPGFSLMQENIGYA-VMTETPVVIVDVQRSGPSTGQPTLPAQGDIM 140 (395)
T ss_dssp GTCEEEECS-CHHHHHHHHHHHHHTTCCEEEEEETTHHHHHTTTCC-----CCCCEEEEEEC------------------
T ss_pred cCcEEEEeC-CHHHHHHHHHHHHHhCCcEEEEeCchHHHHHHHHHHHH-HhcCCCEEEEEeeCCCCCCCCCcccchhHHH
Confidence 345788888 99999999999999999999998888888899999875 6789999999876554221 1223344333
Q ss_pred HHHHhcCC--CcEEEEeCCCCC
Q 041265 289 TTFMACLP--NMVVMKDIKLVL 308 (309)
Q Consensus 289 ~~~~~~iP--~~~v~~Ps~~~e 308 (309)
..++.++| ++.|+.|+|+.|
T Consensus 141 ~~~~~~~g~~g~~vl~p~~~qe 162 (395)
T 1yd7_A 141 QAIWGTHGDHSLIVLSPSTVQE 162 (395)
T ss_dssp --------CCCCEEECCCSHHH
T ss_pred HHHhccCCCcceEEEeCCCHHH
Confidence 34677777 999999999876
No 53
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=97.52 E-value=0.00022 Score=77.25 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=73.2
Q ss_pred CeEEEEEeCC-ccccchHHHHHHHHhhccCcEE-EEEeCcchhhhhhhhhcccchhhccCCcccchhhhHHhhhcCccch
Q 041265 53 NHVISVIVEG-ATIARMSYEAINNAGVLNKALK-RLHSNPQFRQLCQEAFSSKDKKQKFGGQMHEIDAFSREIEAGSRAC 130 (309)
Q Consensus 53 ~~v~~~~GDG-~l~eG~~~EAln~A~~~~~~Li-~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (309)
..|||+.||| +++-|.- .|..|...+.|++ +|.||+.|++..... ......+ ........-+..-.+++..
T Consensus 954 ~~Vv~i~GDG~~~~mg~~--eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~----s~~t~~~-~~t~~~~~g~~~~~~D~~~ 1026 (1231)
T 2c42_A 954 KSVWIFGGDGWAYDIGYG--GLDHVLASGEDVNVFVMDTEVYSNTGGQS----SKATPTG-AVAKFAAAGKRTGKKDLAR 1026 (1231)
T ss_dssp CEEEEEEEHHHHHTTTHH--HHHHHHHTTCSCEEEEEECSSBTTTTCBC----CTTSCTT-CCBBTBTTCCSSCCCCHHH
T ss_pred CcEEEEeCcHHHHHcchH--HHHHHHHhCCCeEEEEEECHHHHhHHhhh----ccCCCCC-ceeeecccCCCCCchhHHH
Confidence 5799999999 7766644 6777887886655 567887776654211 0000000 0000000000001235567
Q ss_pred hhhhcCCeEEecCCC-CCHHHHHHHHHHhhcCCCCCcEEEEEEeee
Q 041265 131 FFEDLGLYYIGPVDG-HNLEDLAYVLKQVKAIPDPGAVLIHVITEK 175 (309)
Q Consensus 131 ~f~a~G~~~~~~vDG-~D~~~l~~al~~a~~~~~~~P~~I~~~T~k 175 (309)
..+++|+.++..+.= .|.+++.++|+++.+. +||++|++.+..
T Consensus 1027 iA~a~G~~~va~~~v~~~~~~l~~al~eAl~~--~GP~lI~v~~~c 1070 (1231)
T 2c42_A 1027 MVMTYGYVYVATVSMGYSKQQFLKVLKEAESF--PGPSLVIAYATC 1070 (1231)
T ss_dssp HHHTTSSSEEEEECTTTCHHHHHHHHHHHHHS--SSCEEEEEECCC
T ss_pred HHHHCCCCEEEEEeccCCHHHHHHHHHHHHhc--CCCEEEEEeecC
Confidence 889999999854443 5999999999999887 899999999864
No 54
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=97.09 E-value=0.0014 Score=70.88 Aligned_cols=93 Identities=13% Similarity=0.025 Sum_probs=68.8
Q ss_pred CceeeccchHHHHHHHHHHHhhCCCeeEEeecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCC-CCCCChhHHHH
Q 041265 213 IRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADG-PTHCGAFDTTF 291 (309)
Q Consensus 213 ~r~~~~gIaE~~~vg~a~GlA~~G~~pi~~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G-~tH~~~~d~~~ 291 (309)
.+++....+|.+.++++.|++..|.|+++.+-+.=+..+.+.|..- +...+|++|+....+..+ .| ..|-...| .+
T Consensus 54 ~~~v~~~esE~aA~~aaiGAa~aGaR~~t~Ts~~Gl~lm~e~l~~~-ag~~~P~Vi~va~R~g~~-~glsi~~~hsd-~~ 130 (1231)
T 2c42_A 54 TLTIREMQSEAGAAGAVHGALAAGALTTTFTASQGLLLMIPNMYKI-SGELLPGVFHVTARAIAA-HALSIFGDHQD-IY 130 (1231)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHHHHH-HHTTCCCEEEEEECCCCS-SSBCCSCCSHH-HH
T ss_pred ceEEEecCChHHHHHHHHHHHHcCChHhhhccHHHHHHHHHHHHHH-hCCCCCEEEEECCCCccC-CCCcCCCchhh-HH
Confidence 5899999999999999999999999999987444344445777554 456899999987554422 12 22323334 35
Q ss_pred HhcCCCcEEEEeCCCCC
Q 041265 292 MACLPNMVVMKDIKLVL 308 (309)
Q Consensus 292 ~~~iP~~~v~~Ps~~~e 308 (309)
....+|+.|++|+|+.|
T Consensus 131 ~ar~~G~~vl~pss~QE 147 (1231)
T 2c42_A 131 AARQTGFAMLASSSVQE 147 (1231)
T ss_dssp TTTTSSCEEEECCSHHH
T ss_pred HHhcCCcEEEECCCHHH
Confidence 67889999999999876
No 55
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=73.24 E-value=11 Score=34.49 Aligned_cols=94 Identities=19% Similarity=0.184 Sum_probs=55.7
Q ss_pred hhHhHhHhcCCCCeEEE-E-EeCCccccchHHHHHHH-Hhhcc--------CcEEEEEeCcchhhhhhhhhcccchhhcc
Q 041265 41 GMAVGRDLLGKNNHVIS-V-IVEGATIARMSYEAINN-AGVLN--------KALKRLHSNPQFRQLCQEAFSSKDKKQKF 109 (309)
Q Consensus 41 G~A~a~k~~~~~~~v~~-~-~GDG~l~eG~~~EAln~-A~~~~--------~~Li~i~~nn~~~~~~~~~~~~~~~~~~~ 109 (309)
|+|++ | .++++ + .+++. -..+|.+.+ ++..+ .|++++..+.+ .. -
T Consensus 70 G~A~~----G--~rp~~~~t~~~F~---~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~--------------~ 125 (338)
T 1qs0_B 70 GMGAY----G--LRPVVEIQFADYF---YPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GI--------------Y 125 (338)
T ss_dssp HHHHH----T--CEEEEECSCGGGC---GGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SS--------------S
T ss_pred HHHhC----C--CEEEEEeccHhHH---HHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CC--------------C
Confidence 66654 4 34555 3 78886 388998764 55433 78888766542 10 0
Q ss_pred CCcccchhhhHHhhhcCccchhhhhc-CCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEEe
Q 041265 110 GGQMHEIDAFSREIEAGSRACFFEDL-GLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVIT 173 (309)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~f~a~-G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~T 173 (309)
+...+..++. ..|++. ||.++.+ -|..+....++.+.+. ++|++|-..+
T Consensus 126 G~th~s~~d~----------~~l~~iP~l~V~~P---sd~~e~~~~l~~A~~~--~~Pv~i~~p~ 175 (338)
T 1qs0_B 126 GGQTHSQSPE----------AMFTQVCGLRTVMP---SNPYDAKGLLIASIEC--DDPVIFLEPK 175 (338)
T ss_dssp CCSSSSCCCH----------HHHTTSTTCEEECC---CSHHHHHHHHHHHHHS--SSCEEEEEEG
T ss_pred CcccccccHH----------HHHhcCCCCEEEee---CCHHHHHHHHHHHHhc--CCcEEEEEch
Confidence 1111111111 224554 9999966 5777777777777665 7899996543
No 56
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=61.00 E-value=45 Score=33.11 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=60.3
Q ss_pred hhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCccc-chhhh
Q 041265 41 GMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMH-EIDAF 119 (309)
Q Consensus 41 G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 119 (309)
|+|.+..+.|....+++..++... ..+|.+.+++..+.|++++.+..++... .+++.+ .+++.
T Consensus 369 ~~a~G~A~~G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~~G-------------~dG~tH~~~ed~ 432 (616)
T 3mos_A 369 SIAVGCATRNRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVSIG-------------EDGPSQMALEDL 432 (616)
T ss_dssp HHHHHHHGGGCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGGGC-------------TTCGGGCBSSHH
T ss_pred HHHHHHHHcCCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCcccc-------------CCCCcccCHHHH
Confidence 444444444543445667889863 8899999988888899888776654210 011111 12222
Q ss_pred HHhhhcCccchhhhh-cCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEE
Q 041265 120 SREIEAGSRACFFED-LGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIH 170 (309)
Q Consensus 120 ~~~~~~~~~~~~f~a-~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~ 170 (309)
. .|+. -|+.++.+ -|..++..+++.+.+. ++|++|-
T Consensus 433 a----------~l~~iP~l~V~~P---~d~~e~~~~l~~a~~~--~gp~~ir 469 (616)
T 3mos_A 433 A----------MFRSVPTSTVFYP---SDGVATEKAVELAANT--KGICFIR 469 (616)
T ss_dssp H----------HHHTSTTEEEECC---CSHHHHHHHHHHHHTC--CSEEEEE
T ss_pred H----------HhcCCCCCEEEec---CCHHHHHHHHHHHHhc--CCCEEEE
Confidence 1 1222 37888855 4777777778877765 7898763
No 57
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=58.41 E-value=40 Score=30.76 Aligned_cols=92 Identities=17% Similarity=0.124 Sum_probs=54.8
Q ss_pred hhHhHhHhcCCCCeEEE--EEeCCccccchHHHHHHHHhh---------ccCcEEEEEeCcchhhhhhhhhcccchhhcc
Q 041265 41 GMAVGRDLLGKNNHVIS--VIVEGATIARMSYEAINNAGV---------LNKALKRLHSNPQFRQLCQEAFSSKDKKQKF 109 (309)
Q Consensus 41 G~A~a~k~~~~~~~v~~--~~GDG~l~eG~~~EAln~A~~---------~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~ 109 (309)
|+|++ | .+.|+ ..+|.. ...+|.+.+.+. .+.|++++... ++.. .
T Consensus 80 G~A~~----G--~rp~~~~~f~~F~---~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g--~------------ 135 (341)
T 2ozl_B 80 GAAMA----G--LRPICEFMTFNFS---MQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASA--G------------ 135 (341)
T ss_dssp HHHHT----T--CEEEEECSSGGGG---GGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCS--S------------
T ss_pred HHHHC----C--CEEEEEeccHHHH---HHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCC--C------------
Confidence 66653 4 34444 378887 578999887654 56888888776 3311 0
Q ss_pred CCccc--chhhhHHhhhcCccchhhhhcCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEE
Q 041265 110 GGQMH--EIDAFSREIEAGSRACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVI 172 (309)
Q Consensus 110 ~~~~~--~~~~~~~~~~~~~~~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~ 172 (309)
.++.+ .++.+++ .--||.++.+ -|..+...+++.+.+. ++|++|-..
T Consensus 136 ~G~tHs~~~ea~l~-----------~iP~l~V~~P---sd~~e~~~~l~~a~~~--~~Pv~i~~~ 184 (341)
T 2ozl_B 136 VAAQHSQCFAAWYG-----------HCPGLKVVSP---WNSEDAKGLIKSAIRD--NNPVVVLEN 184 (341)
T ss_dssp CCGGGCCCCHHHHH-----------TSTTCEEECC---CSHHHHHHHHHHHHHS--SSCEEEEEC
T ss_pred CCcchhhHHHHHhc-----------cCCCCEEEEe---CCHHHHHHHHHHHHhc--CCCEEEEEC
Confidence 11111 1122211 1238999866 5777777777777665 789988553
No 58
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=57.77 E-value=31 Score=31.94 Aligned_cols=92 Identities=20% Similarity=0.194 Sum_probs=49.0
Q ss_pred hhHhHhHhcCCCCeEEE-E-EeCCccccchHHHHHHH-Hhhc--------cCcEEEEEeCcchhhhhhhhhcccchhhcc
Q 041265 41 GMAVGRDLLGKNNHVIS-V-IVEGATIARMSYEAINN-AGVL--------NKALKRLHSNPQFRQLCQEAFSSKDKKQKF 109 (309)
Q Consensus 41 G~A~a~k~~~~~~~v~~-~-~GDG~l~eG~~~EAln~-A~~~--------~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~ 109 (309)
|+|++ | .+.|+ + .+|.. -..++.+.+ ++.. +.|++++....+...
T Consensus 116 G~A~~----G--~rpv~~~tf~~Fl---~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g--------------- 171 (369)
T 1ik6_A 116 GMAMA----G--LKPVAEIQFVDFI---WLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTR--------------- 171 (369)
T ss_dssp HHHHT----T--CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC------------------
T ss_pred HHHHC----C--CeeEEEecchhHH---HHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCC---------------
Confidence 66654 4 34444 4 88876 378898866 5544 788888766653210
Q ss_pred CCcccchhhhHHhhhcCccchhhhh-cCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 110 GGQMHEIDAFSREIEAGSRACFFED-LGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~f~a-~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
+++.+..... ..|++ -||.++.+ -|..+...+++.+.+. ++|++|..
T Consensus 172 ~g~~hs~~~~----------a~l~~iPnl~V~~P---sd~~e~~~ll~~A~~~--~~Pv~i~~ 219 (369)
T 1ik6_A 172 GGLYHSNSPE----------AIFVHTPGLVVVMP---STPYNAKGLLKAAIRG--DDPVVFLE 219 (369)
T ss_dssp --------HH----------HHHHTCTTCEEECC---CSHHHHHHHHHHHHHS--SSCEEEEE
T ss_pred CCccccccHH----------HHHcCCCCcEEEec---CCHHHHHHHHHHHHhC--CCCEEEEE
Confidence 1111111111 11233 49999866 4666667667666554 78999853
No 59
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=56.42 E-value=25 Score=32.13 Aligned_cols=36 Identities=11% Similarity=0.060 Sum_probs=24.9
Q ss_pred hhhc-CCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEE
Q 041265 132 FEDL-GLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVI 172 (309)
Q Consensus 132 f~a~-G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~ 172 (309)
+++. ||.++.+ -|..+....++.+.+. ++|++|-..
T Consensus 154 l~~iP~l~V~~P---sd~~e~~~~l~~a~~~--~~Pv~i~~p 190 (342)
T 2bfd_B 154 FAHCPGIKVVIP---RSPFQAKGLLLSCIED--KNPCIFFEP 190 (342)
T ss_dssp HHTSTTCEEECC---SSHHHHHHHHHHHHHS--SSCEEEEEE
T ss_pred HhcCCCcEEEee---CCHHHHHHHHHHHHhc--CCcEEEEec
Confidence 3444 8999866 5667777777766655 779998543
No 60
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=52.40 E-value=64 Score=31.89 Aligned_cols=97 Identities=10% Similarity=0.167 Sum_probs=55.1
Q ss_pred HhHhHhcCCCCeEEEEEeCCccccchHHHH-HHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCccc-chhhhH
Q 041265 43 AVGRDLLGKNNHVISVIVEGATIARMSYEA-INNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMH-EIDAFS 120 (309)
Q Consensus 43 A~a~k~~~~~~~v~~~~GDG~l~eG~~~EA-ln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 120 (309)
|.+..+.| -..++...++.. + ..+|- ++.++..+.|++++..+.++. ... ++.+ .+.+.
T Consensus 377 a~G~A~~G-~rp~~~~~~~F~-~--~a~dqi~~~~a~~~~pvv~~~~~~g~~--g~~------------G~tH~~~~d~- 437 (621)
T 2o1s_A 377 AAGLAIGG-YKPIVAIYSTFL-Q--RAYDQVLHDVAIQKLPVLFAIDRAGIV--GAD------------GQTHQGAFDL- 437 (621)
T ss_dssp HHHHHHTT-CEEEEEEETTGG-G--GGHHHHHHTTTTTTCCCEEEEESCBCC--CTT------------CGGGCBCSHH-
T ss_pred HHHHHHCC-CEEEEEehHhHH-H--HHHHHHHHHHHhcCCCEEEEEECCccC--CCC------------CCccCchHHH-
Confidence 33333335 334566677764 2 67775 566788789999888876541 101 1111 11221
Q ss_pred HhhhcCccchhhhhc-CCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 121 REIEAGSRACFFEDL-GLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 121 ~~~~~~~~~~~f~a~-G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
..|++. ||.++.+ -|..++..+++.+.+.. ++|++|-.
T Consensus 438 ---------~~~~~iP~l~v~~P---~d~~e~~~~l~~a~~~~-~~Pv~i~~ 476 (621)
T 2o1s_A 438 ---------SYLRCIPEMVIMTP---SDENECRQMLYTGYHYN-DGPSAVRY 476 (621)
T ss_dssp ---------HHTTTSTTCEEECC---SSHHHHHHHHHHHHHCC-SSCEEEEC
T ss_pred ---------HHHhcCCCCEEEec---CCHHHHHHHHHHHHHcC-CCCEEEEe
Confidence 124554 9999966 45666666666655432 56988854
No 61
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=50.60 E-value=29 Score=34.04 Aligned_cols=85 Identities=6% Similarity=-0.096 Sum_probs=58.5
Q ss_pred ccchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc--cCCCCCCCCChhHHHHHh
Q 041265 218 VGIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL--VGADGPTHCGAFDTTFMA 293 (309)
Q Consensus 218 ~gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~--~g~~G~tH~~~~d~~~~~ 293 (309)
.-..|++.+-+|.|.|+. |...++. +..+=...++..|.+. -..+.|++++...... .+ .+ .+|..+...+++
T Consensus 48 ~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl~~A-~~~~vPll~Itg~~p~~~~g-~~-~~Q~~d~~~~~~ 124 (590)
T 1v5e_A 48 QVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGLYDA-AMDNIPVVAILGSRPQRELN-MD-AFQELNQNPMYD 124 (590)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHHHHH-HHHTCCEEEEEEECCGGGTT-TT-CTTCCCCHHHHH
T ss_pred eeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHHHHH-HhcCCCEEEEcCCCCcccCC-CC-cccccCHHHHHH
Confidence 468999999999999996 5444444 5666666677777664 4568999999765544 22 22 366667778999
Q ss_pred cCCCcEEEEeCCC
Q 041265 294 CLPNMVVMKDIKL 306 (309)
Q Consensus 294 ~iP~~~v~~Ps~~ 306 (309)
.+-.+ .+.+.++
T Consensus 125 ~~tk~-~~~v~~~ 136 (590)
T 1v5e_A 125 HIAVY-NRRVAYA 136 (590)
T ss_dssp TTCSE-EEECCSG
T ss_pred hhccE-EEEeCCH
Confidence 88776 3444444
No 62
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=48.18 E-value=1.7e+02 Score=29.09 Aligned_cols=122 Identities=10% Similarity=0.079 Sum_probs=64.3
Q ss_pred cCCCC-CCCCCC-CCcCCchhhH-hhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCc
Q 041265 6 QTCGL-ENVHDA-FGVGHSSTSI-SAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKA 82 (309)
Q Consensus 6 ~~~g~-e~~~d~-~~~G~~g~gl-s~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~ 82 (309)
.++++ +..++. +.+|..=+++ +++. |+|+. |.-..+++....-.. ..++++.+++..+.|
T Consensus 392 ~~~~f~~~~p~R~id~GIaE~~~v~~a~----------GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lp 454 (669)
T 2r8o_A 392 GSKAINEDAAGNYIHYGVREFGMTAIAN----------GISLH----GGFLPYTSTFLMFVE---YARNAVRMAALMKQR 454 (669)
T ss_dssp TCCBTTTCTTCSEEECCSCHHHHHHHHH----------HHHHH----SSCEEEEEEEGGGGG---TTHHHHHHHHHTTCC
T ss_pred ccccccccCCCCeeecchhHHHHHHHHH----------HHHHc----CCCeEEEeehHHHHH---HHHHHHHHHHhcCCC
Confidence 33344 333454 5667665553 2444 66653 312233444444332 568899999888899
Q ss_pred EEEEEeCcchhhhhhhhhcccchhhccCCcc-cchhhhHHhhhcCccchhhhh-cCCeEEecCCCCCHHHHHHHHHHhhc
Q 041265 83 LKRLHSNPQFRQLCQEAFSSKDKKQKFGGQM-HEIDAFSREIEAGSRACFFED-LGLYYIGPVDGHNLEDLAYVLKQVKA 160 (309)
Q Consensus 83 Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~a-~G~~~~~~vDG~D~~~l~~al~~a~~ 160 (309)
++++....+++. . .+++. +.+++.. .+++ -|+.++.+. |..++..+++.+.+
T Consensus 455 vv~~~t~~g~~~-G------------~dG~tHq~~edla----------~lr~iP~l~V~~Pa---d~~E~~~~l~~a~~ 508 (669)
T 2r8o_A 455 QVMVYTHDSIGL-G------------EDGPTHQPVEQVA----------SLRVTPNMSTWRPC---DQVESAVAWKYGVE 508 (669)
T ss_dssp CEEEEECCSGGG-C------------TTCTTTCCSSHHH----------HHHTSTTCEEECCS---SHHHHHHHHHHHHH
T ss_pred EEEEEeCCCcCc-C------------CCCCccCCHHHHH----------HhcCCCCCEEEecC---CHHHHHHHHHHHHH
Confidence 988865443321 0 01111 1123221 2333 388998775 55555555555544
Q ss_pred CCCCCcEEEEE
Q 041265 161 IPDPGAVLIHV 171 (309)
Q Consensus 161 ~~~~~P~~I~~ 171 (309)
.. ++|++|..
T Consensus 509 ~~-~~Pv~i~~ 518 (669)
T 2r8o_A 509 RQ-DGPTALIL 518 (669)
T ss_dssp CS-SSCEEEEC
T ss_pred hC-CCcEEEEe
Confidence 21 57999843
No 63
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=46.27 E-value=63 Score=31.43 Aligned_cols=84 Identities=19% Similarity=0.079 Sum_probs=58.8
Q ss_pred ccchHHHHHHHHHHHhhC-CCeeEE-eecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc--cCCCCCCCCChhHHHHHh
Q 041265 218 VGIAEQHAVTFAAGLAAE-GLKPFC-AIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL--VGADGPTHCGAFDTTFMA 293 (309)
Q Consensus 218 ~gIaE~~~vg~a~GlA~~-G~~pi~-~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~--~g~~G~tH~~~~d~~~~~ 293 (309)
....|++..-+|-|.|+. |.-.++ .+..+=...++..|.+. -..+.|++++...... .+ .+..||..+...+++
T Consensus 53 ~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~v~~A-~~~~~Pll~itg~~~~~~~~-~~~~~Q~~d~~~~~~ 130 (573)
T 2iht_A 53 LTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIATS-VLDRSPVIALAAQSESHDIF-PNDTHQCLDSVAIVA 130 (573)
T ss_dssp ECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHHHHH-HHHTCCEEEEEEESCGGGCC-TTTSTTCCCHHHHHG
T ss_pred eeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHHHHHHHHH-HhhCCCEEEEcccCcccccC-CcCccccCCHHHHHH
Confidence 368999999999999985 544344 35666566666666664 4668999998765444 22 213588888889999
Q ss_pred cCCCcEEEEe
Q 041265 294 CLPNMVVMKD 303 (309)
Q Consensus 294 ~iP~~~v~~P 303 (309)
.+..+....+
T Consensus 131 ~~~k~~~~v~ 140 (573)
T 2iht_A 131 PMSKYAVELQ 140 (573)
T ss_dssp GGSSEEEECC
T ss_pred hHhhEEEEcC
Confidence 8887765443
No 64
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=44.11 E-value=72 Score=28.65 Aligned_cols=90 Identities=12% Similarity=0.073 Sum_probs=51.7
Q ss_pred hhHhHhHhcCCCCeEEE-E-EeCCccccchHHHHHHH-Hhh--------ccCcEEEEEeCcchhhhhhhhhcccchhhcc
Q 041265 41 GMAVGRDLLGKNNHVIS-V-IVEGATIARMSYEAINN-AGV--------LNKALKRLHSNPQFRQLCQEAFSSKDKKQKF 109 (309)
Q Consensus 41 G~A~a~k~~~~~~~v~~-~-~GDG~l~eG~~~EAln~-A~~--------~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~ 109 (309)
|+|++ | .+.++ + .++.. -..+|.+.+ ++. .+.|++++.+. ++.. .
T Consensus 68 G~A~~----G--~rp~~~~t~~~F~---~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~--------------~ 123 (324)
T 1w85_B 68 GLALQ----G--FRPVPEIQFFGFV---YEVMDSICGQMARIRYRTGGRYHMPITIRSPF-GGGV--------------H 123 (324)
T ss_dssp HHHHT----T--CEEEEBCSSGGGG---GGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEE-CSSS--------------C
T ss_pred HHHhC----C--CEEEEEecchhHH---HHHHHHHHHHHHHHhhhccCCCcCCEEEEEec-cCCC--------------C
Confidence 66654 4 34555 3 78886 378998875 443 46788887663 3311 0
Q ss_pred CCcccch--hhhHHhhhcCccchhhhh-cCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 110 GGQMHEI--DAFSREIEAGSRACFFED-LGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 110 ~~~~~~~--~~~~~~~~~~~~~~~f~a-~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
+++.+.. +.+ +++ -||.++.+ -|..+....++.+.+. ++|++|-.
T Consensus 124 ~g~~hs~~~~a~------------~~~iP~l~V~~P---sd~~e~~~~l~~a~~~--~~Pv~i~~ 171 (324)
T 1w85_B 124 TPELHSDSLEGL------------VAQQPGLKVVIP---STPYDAKGLLISAIRD--NDPVIFLE 171 (324)
T ss_dssp CCTTSSCCCHHH------------HTTSTTCEEECC---SSHHHHHHHHHHHHHS--SSCEEEEE
T ss_pred CCCcccccHHHH------------HccCCCCEEEee---CCHHHHHHHHHHHHHc--CCCEEEEe
Confidence 1111111 122 233 38998866 5666667666666554 78999853
No 65
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=43.71 E-value=56 Score=31.75 Aligned_cols=87 Identities=11% Similarity=0.003 Sum_probs=55.6
Q ss_pred ceeeccchHHHHHHHHHHHhhC-CCeeEE-eecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCccCCCCCCCCChhHHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAE-GLKPFC-AIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDTTF 291 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~-G~~pi~-~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~g~~G~tH~~~~d~~~ 291 (309)
|++. ...|++.+-+|-|.|+. |...++ .+..+=...++..|.+. -..+.|++++.........+-..||..+...+
T Consensus 50 ~~v~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l~~A-~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~ 127 (566)
T 1ozh_A 50 RIIP-VRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGMATA-NSEGDPVVALGGAVKRADKAKQVHQSMDTVAM 127 (566)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHHHHH-HHHTCCEEEEEEECCTTTC------CCCHHHH
T ss_pred cEEE-eCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHHHHHHHH-HhcCCCEEEEeCCCccccCCCCcccccCHHHH
Confidence 4444 48899999999999984 655455 35666555666666554 35689999887654442111124778888899
Q ss_pred HhcCCCcEEEE
Q 041265 292 MACLPNMVVMK 302 (309)
Q Consensus 292 ~~~iP~~~v~~ 302 (309)
++.+..+....
T Consensus 128 ~~~~tk~~~~v 138 (566)
T 1ozh_A 128 FSPVTKYAIEV 138 (566)
T ss_dssp HGGGCSEEEEC
T ss_pred HHHHhheEEEc
Confidence 99888765544
No 66
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=43.71 E-value=67 Score=31.09 Aligned_cols=86 Identities=16% Similarity=0.066 Sum_probs=58.6
Q ss_pred ceeeccchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCcc-CCCCCCCCC-hhHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLV-GADGPTHCG-AFDT 289 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~-g~~G~tH~~-~~d~ 289 (309)
|++. ...|++.+-+|-|.|+. |...++. +..+=...++..|.+. -..+.|++++....... -..| .||. .+..
T Consensus 43 ~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l~~A-~~~~~Pll~itg~~~~~~~~~~-~~Q~~~d~~ 119 (563)
T 2uz1_A 43 PIID-TRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNAVTPIANA-WLDRTPVLFLTGSGALRDDETN-TLQAGIDQV 119 (563)
T ss_dssp CEEE-CSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTTHHHHHHH-HHHTCCEEEEEEECCGGGTTSC-CTTCCCCHH
T ss_pred cEEe-eCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHHHHHHHHH-HhcCCCEEEEeCCCCcccCCch-hhhhhccHH
Confidence 4544 57899999999999985 6554554 5665555666666664 45689999987655442 1123 3777 7788
Q ss_pred HHHhcCCCcEEEE
Q 041265 290 TFMACLPNMVVMK 302 (309)
Q Consensus 290 ~~~~~iP~~~v~~ 302 (309)
.+++.+-.+....
T Consensus 120 ~~~~~~tk~~~~v 132 (563)
T 2uz1_A 120 AMAAPITKWAHRV 132 (563)
T ss_dssp HHHGGGCSEEEEC
T ss_pred HHhhhhhceEEEc
Confidence 8999887765444
No 67
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=39.74 E-value=81 Score=30.73 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=56.1
Q ss_pred ccchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc--cCCCCCCCCChhHHHHHh
Q 041265 218 VGIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL--VGADGPTHCGAFDTTFMA 293 (309)
Q Consensus 218 ~gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~--~g~~G~tH~~~~d~~~~~ 293 (309)
....|++.+.+|-|.|+. |...++. +..+=...++..|.+. -..+.|++++...... .+ .| .+|..+...+++
T Consensus 55 ~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~gv~~A-~~~~vPll~itg~~~~~~~g-~~-~~Q~~d~~~~~~ 131 (590)
T 1ybh_A 55 LPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADA-LLDSVPLVAITGQVPRRMIG-TD-AFQETPIVEVTR 131 (590)
T ss_dssp CCSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHH-HHHTCCEEEEEEECCGGGTT-TT-CTTCCCHHHHHG
T ss_pred eeCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHHHHHHHHH-HhhCCCEEEEeCcCCccccC-CC-cccccCHHHHHH
Confidence 456899999999999985 6655553 5665556666666554 4568999998765444 23 23 366777778888
Q ss_pred cCCCcEEEE
Q 041265 294 CLPNMVVMK 302 (309)
Q Consensus 294 ~iP~~~v~~ 302 (309)
.+-.+....
T Consensus 132 ~~~k~~~~v 140 (590)
T 1ybh_A 132 SITKHNYLV 140 (590)
T ss_dssp GGSSEEEEC
T ss_pred HHhCeEEec
Confidence 887765443
No 68
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=39.10 E-value=1.4e+02 Score=29.58 Aligned_cols=77 Identities=12% Similarity=0.147 Sum_probs=45.0
Q ss_pred hHHHHHHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcc-cchhhhHHhhhcCccchhhhhc-CCeEEecCCC
Q 041265 68 MSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQM-HEIDAFSREIEAGSRACFFEDL-GLYYIGPVDG 145 (309)
Q Consensus 68 ~~~EAln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~a~-G~~~~~~vDG 145 (309)
-.++++.+++..+.|++++..+.+++. . .+++. +.++++. .+++. ||.++.+.
T Consensus 435 ~~~~air~~a~~~lpvv~~~t~~g~g~-G------------~dG~tHq~~edla----------~lr~iP~l~V~~Pa-- 489 (651)
T 2e6k_A 435 YMRPAIRLAALMGVPTVFVFTHDSIAL-G------------EDGPTHQPVEHLM----------SLRAMPNLFVIRPA-- 489 (651)
T ss_dssp GSHHHHHHHHHHTCCCEEEEECCSGGG-C------------TTCTTTCCSSHHH----------HHHTSTTCEEECCS--
T ss_pred HHHHHHHHHHhcCCCEEEEEECCcccc-C------------CCcCccccHHHHH----------HhcCCCCcEEEecC--
Confidence 567889999888999988864443321 0 01111 2223321 23443 89999775
Q ss_pred CCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 146 HNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 146 ~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
|..++..+++.+.+.. ++|++|..
T Consensus 490 -d~~E~~~~l~~A~~~~-~~Pv~i~~ 513 (651)
T 2e6k_A 490 -DAYETFYAWLVALRRK-EGPTALVL 513 (651)
T ss_dssp -SHHHHHHHHHHHHHCC-SSCEEEEC
T ss_pred -CHHHHHHHHHHHHHcC-CCCEEEEE
Confidence 5555666666554421 56999865
No 69
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=37.71 E-value=92 Score=30.82 Aligned_cols=99 Identities=16% Similarity=0.215 Sum_probs=57.0
Q ss_pred hhHhHhHhcCCCCeEEEEEeCCccccchHHHH-HHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCccc-chhh
Q 041265 41 GMAVGRDLLGKNNHVISVIVEGATIARMSYEA-INNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMH-EIDA 118 (309)
Q Consensus 41 G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EA-ln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 118 (309)
|+|.+..+.|. ..++....+.. + ..+|- ++.++..+.|++++.++.++. .+. ++.+ .+.+
T Consensus 378 ~~a~G~A~~G~-rp~~~~~~~F~-~--~a~dqi~~~~a~~~~pvv~~~~~~g~~--g~d------------G~tH~~~~d 439 (629)
T 2o1x_A 378 TTAAGMALQGM-RPVVAIYSTFL-Q--RAYDQVLHDVAIEHLNVTFCIDRAGIV--GAD------------GATHNGVFD 439 (629)
T ss_dssp HHHHHHHHTTC-EEEEEEEHHHH-G--GGHHHHHHTTTTTTCCCEEEEESBBCC--CTT------------CTTTCBCSH
T ss_pred HHHHHHHHcCC-EEEEEecHHHH-H--HHHHHHHHHHhhcCCCEEEEEECCccC--CCC------------CcccCccHH
Confidence 34444444453 33555567653 2 66775 466788789999888876541 111 1111 1112
Q ss_pred hHHhhhcCccchhhhh-cCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEEE
Q 041265 119 FSREIEAGSRACFFED-LGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHVI 172 (309)
Q Consensus 119 ~~~~~~~~~~~~~f~a-~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~~ 172 (309)
. ..|+. -||.++.+ -|..++..+++.+.+. ++|++|-..
T Consensus 440 ~----------a~~r~iP~l~v~~P---~d~~e~~~~~~~a~~~--~~Pv~i~~~ 479 (629)
T 2o1x_A 440 L----------SFLRSIPGVRIGLP---KDAAELRGMLKYAQTH--DGPFAIRYP 479 (629)
T ss_dssp H----------HHTTTSTTCEEECC---SSHHHHHHHHHHHHHS--SSCEEEECC
T ss_pred H----------HHHHccCCcEEEec---CCHHHHHHHHHHHHhC--CCCEEEEec
Confidence 1 12344 49999866 4667777777776665 679998553
No 70
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=35.31 E-value=99 Score=26.77 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=25.9
Q ss_pred chhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC
Q 041265 129 ACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI 161 (309)
Q Consensus 129 ~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~ 161 (309)
...|+.+||+|. ...--+.+++.++++++.+.
T Consensus 47 ~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 47 RETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp HHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 456899999998 65557899999999987654
No 71
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=35.10 E-value=99 Score=30.94 Aligned_cols=85 Identities=15% Similarity=0.058 Sum_probs=57.3
Q ss_pred ceeeccchHHHHHHHHHHHhhC-CCeeEE-eecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc--cCCCCCCCCChhHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAE-GLKPFC-AIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL--VGADGPTHCGAFDT 289 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~-G~~pi~-~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~--~g~~G~tH~~~~d~ 289 (309)
|++ ....|++.+-+|-|.|+. |...++ .+..+=...++..|.+. -..+.||+++...... .+ .+ .+|..+..
T Consensus 122 ~~v-~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~~~gia~A-~~d~vPllvItG~~~~~~~g-~~-a~Q~~Dq~ 197 (677)
T 1t9b_A 122 NFV-LPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADA-FADGIPMVVFTGQVPTSAIG-TD-AFQEADVV 197 (677)
T ss_dssp EEE-CCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHHHHH-HHHTCCEEEEEEECCTTTTT-SC-CTTCCCHH
T ss_pred eEE-EeCChHHHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHHHHH-HHcCCCEEEEeCCCChhhcC-CC-CccccCHH
Confidence 344 468999999999999984 655455 45666556666666554 3568999988764433 22 23 36677777
Q ss_pred HHHhcCCCcEEEE
Q 041265 290 TFMACLPNMVVMK 302 (309)
Q Consensus 290 ~~~~~iP~~~v~~ 302 (309)
.+++.+-.+.+..
T Consensus 198 ~i~~~~tk~~~~v 210 (677)
T 1t9b_A 198 GISRSCTKWNVMV 210 (677)
T ss_dssp HHTGGGSSEEEEC
T ss_pred HHhhhheeEEEEc
Confidence 8888777665444
No 72
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=35.05 E-value=86 Score=30.58 Aligned_cols=86 Identities=6% Similarity=-0.119 Sum_probs=57.5
Q ss_pred ceeeccchHHHHHHHHHHHhhC-CCeeEE-eecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCcc-CCCCCCCCChhHHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAE-GLKPFC-AIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGLV-GADGPTHCGAFDTT 290 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~-G~~pi~-~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~~-g~~G~tH~~~~d~~ 290 (309)
|++. ...|++..-+|-|.|+. |...++ .+..+=...++..|.+. -..+.|++++....... -..+..||..+...
T Consensus 45 ~~v~-~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv~~A-~~~~vPll~itg~~~~~~~~~~~~~Q~~d~~~ 122 (589)
T 2pgn_A 45 RVIN-PATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAMQEA-RTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQS 122 (589)
T ss_dssp TCBC-CSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHHHHH-HHTTCCEEEEEEESCGGGTTCTTCSSCCCGGG
T ss_pred eEEE-eCcHHHHHHHHHHHHHHHCCCEEEEEecCchHHHHHHHHHHH-HhcCCCEEEEecCCcccccCCCCcccccChhh
Confidence 4443 47899999999999984 654444 46776666666667664 46789999987654442 11231577887777
Q ss_pred HHhcCCCcEEEE
Q 041265 291 FMACLPNMVVMK 302 (309)
Q Consensus 291 ~~~~iP~~~v~~ 302 (309)
++.+..+....
T Consensus 123 -~~~~tk~~~~v 133 (589)
T 2pgn_A 123 -FTPIARSTQRV 133 (589)
T ss_dssp -GTTTSSEEEEC
T ss_pred -ccccEEEEeec
Confidence 88777665443
No 73
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=34.33 E-value=1.6e+02 Score=28.42 Aligned_cols=83 Identities=13% Similarity=0.074 Sum_probs=53.8
Q ss_pred ccchHHHHHHHHHHHhh-CCCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc--cCCCCCCCCCh------h
Q 041265 218 VGIAEQHAVTFAAGLAA-EGLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL--VGADGPTHCGA------F 287 (309)
Q Consensus 218 ~gIaE~~~vg~a~GlA~-~G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~--~g~~G~tH~~~------~ 287 (309)
....|++.+.+|.|.|+ .| ..++. +..+=...++..|.+. -..+.|++++...... .+.+...||.. +
T Consensus 46 ~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia~A-~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d 123 (566)
T 2vbi_A 46 YCCNELNCGFSAEGYARSNG-AAAAVVTFSVGAISAMNALGGA-YAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSY 123 (566)
T ss_dssp ECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHHHHH-HHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTH
T ss_pred eeCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHHHHH-HhhCCCEEEEECCCChHHhccCceeeeeccCcchHH
Confidence 46789999999999998 58 55554 4555445556666553 4678999999765544 23222234422 4
Q ss_pred HHHHHhcCCCcEEEE
Q 041265 288 DTTFMACLPNMVVMK 302 (309)
Q Consensus 288 d~~~~~~iP~~~v~~ 302 (309)
...+++.+-.+.+..
T Consensus 124 ~~~~~~~~tk~~~~v 138 (566)
T 2vbi_A 124 QLEMARQVTCAAESI 138 (566)
T ss_dssp HHHHHHTTCSEEEEE
T ss_pred HHHHHhhhEeEEEEe
Confidence 568888887654443
No 74
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=33.38 E-value=1.2e+02 Score=29.55 Aligned_cols=84 Identities=10% Similarity=-0.019 Sum_probs=56.7
Q ss_pred eccchHHHHHHHHHHHhhC-CCeeE-E-eecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc-cCCCCCCCCChhHHHHH
Q 041265 217 DVGIAEQHAVTFAAGLAAE-GLKPF-C-AIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL-VGADGPTHCGAFDTTFM 292 (309)
Q Consensus 217 ~~gIaE~~~vg~a~GlA~~-G~~pi-~-~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~-~g~~G~tH~~~~d~~~~ 292 (309)
-....|++.+-+|.|.|+. |-+|. + .+..+=...++..|.+. .+.+.|++++...... .-..| .+|..+...++
T Consensus 69 i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l~~A-~~~~vPlvvItg~~p~~~~~~~-~~Q~~d~~~~~ 146 (616)
T 2pan_A 69 ILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSA-SADSIPILCITGQAPRARLHKE-DFQAVDIEAIA 146 (616)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHHHHH-HHTTCCEEEEEEECCGGGTTTT-CTTCCCHHHHH
T ss_pred EeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHHHHH-HhcCCCEEEEecCCcccccCcc-cccccCHHHHH
Confidence 3567899999999999985 44544 4 35666566667777665 4679999998765433 11123 25666667888
Q ss_pred hcCCCcEEEE
Q 041265 293 ACLPNMVVMK 302 (309)
Q Consensus 293 ~~iP~~~v~~ 302 (309)
+.+-.+..-.
T Consensus 147 ~~~tk~~~~v 156 (616)
T 2pan_A 147 KPVSKMAVTV 156 (616)
T ss_dssp GGGSSEEEEC
T ss_pred HHHHHhhccc
Confidence 8877765544
No 75
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=33.37 E-value=1e+02 Score=27.07 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=25.9
Q ss_pred chhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC
Q 041265 129 ACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI 161 (309)
Q Consensus 129 ~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~ 161 (309)
...|+.+||+|. ..+--+.+++.++|+++.+.
T Consensus 62 ~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 62 SKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp HHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCEEE-EecCcCHHHHHHHHHHHHHh
Confidence 456899999998 66667899999999987643
No 76
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=33.23 E-value=1.8e+02 Score=28.03 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=55.5
Q ss_pred ceeeccchHHHHHHHHHHHhh-CCCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc--cCCCCCCCCC----
Q 041265 214 RCFDVGIAEQHAVTFAAGLAA-EGLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL--VGADGPTHCG---- 285 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~-~G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~--~g~~G~tH~~---- 285 (309)
|++. ...|++.+-+|-|.|+ .| ..++. +..+=...++..|.+. -..+.|++++...... .+.+...||.
T Consensus 43 ~~i~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia~A-~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (568)
T 2wvg_A 43 EQVY-CCNELNCGFSAEGYARAKG-AAAAVVTYSVGALSAFDAIGGA-YAENLPVILISGAPNNNDHAAGHVLHHALGKT 119 (568)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHHHHH-HHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred eEec-cCcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHHHHHHHHH-hhhCCCEEEEeCCCChhHhccCcceeeecccc
Confidence 4444 4899999999999997 58 44443 5555445566666553 4678999998765444 2322223442
Q ss_pred --hhHHHHHhcCCCcEEEE
Q 041265 286 --AFDTTFMACLPNMVVMK 302 (309)
Q Consensus 286 --~~d~~~~~~iP~~~v~~ 302 (309)
.+...+++.+-.+....
T Consensus 120 ~~~d~~~~~~~~tk~~~~v 138 (568)
T 2wvg_A 120 DYHYQLEMAKNITAAAEAI 138 (568)
T ss_dssp CCCHHHHHHTTSCSCEEEE
T ss_pred chHHHHHHHHhhEeEEEEe
Confidence 24578898887775444
No 77
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=32.97 E-value=1.8e+02 Score=28.98 Aligned_cols=114 Identities=9% Similarity=0.067 Sum_probs=61.3
Q ss_pred CCC-CCcCCchhhH-hhHhhcccccccchhhHhHhHhcCC-CCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCc
Q 041265 14 HDA-FGVGHSSTSI-SAGLRTRINYFRYVGMAVGRDLLGK-NNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNP 90 (309)
Q Consensus 14 ~d~-~~~G~~g~gl-s~a~~~~~~~~~~~G~A~a~k~~~~-~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn 90 (309)
++. +.+|..=+++ +++. |+|+ .|. -..++....+... ..++++.+++..+.|++++....
T Consensus 413 ~~R~id~gIaE~~~v~~a~----------GlA~----~G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~ 475 (675)
T 1itz_A 413 EERNVRFGVREHGMGAICN----------GIAL----HSPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHD 475 (675)
T ss_dssp TCCBCCCCSCHHHHHHHHH----------HHHT----TCTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECC
T ss_pred CCCeEeecccHHHHHHHHH----------HHHh----cCCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECC
Confidence 444 5667554433 3455 6664 352 2334444444432 67899999998899988886443
Q ss_pred chhhhhhhhhcccchhhccCCcc-cchhhhHHhhhcCccchhhhh-cCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEE
Q 041265 91 QFRQLCQEAFSSKDKKQKFGGQM-HEIDAFSREIEAGSRACFFED-LGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVL 168 (309)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~a-~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~ 168 (309)
+++. . ..++. +.+++.. .|++ -|+.++.+. |..++..+++.+.+.. ++|++
T Consensus 476 g~g~-G------------~dG~tHq~~edla----------~lr~iP~l~V~~Pa---d~~e~~~~l~~a~~~~-~~Pv~ 528 (675)
T 1itz_A 476 SIGL-G------------EDGPTHQPIEHLV----------SFRAMPNILMLRPA---DGNETAGAYKVAVLNR-KRPSI 528 (675)
T ss_dssp SGGG-C------------TTCTTTCCSSHHH----------HHHSSSSCEEECCC---SHHHHHHHHHHHHHCT-TSCEE
T ss_pred cccc-C------------CCCCCcCcHHHHH----------HhccCCCeEEEECC---CHHHHHHHHHHHHHhC-CCcEE
Confidence 3321 0 01111 1223221 1222 478888674 5556666666554421 67999
Q ss_pred EEE
Q 041265 169 IHV 171 (309)
Q Consensus 169 I~~ 171 (309)
|..
T Consensus 529 i~~ 531 (675)
T 1itz_A 529 LAL 531 (675)
T ss_dssp EEE
T ss_pred EEe
Confidence 854
No 78
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=32.87 E-value=2.2e+02 Score=25.36 Aligned_cols=30 Identities=20% Similarity=0.115 Sum_probs=21.6
Q ss_pred CCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEE
Q 041265 136 GLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIH 170 (309)
Q Consensus 136 G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~ 170 (309)
||.++.+ -|..+....++.+.+. ++|++|-
T Consensus 142 ~~~V~~P---~d~~e~~~~l~~a~~~--~~Pv~i~ 171 (324)
T 1umd_B 142 GLKVVAV---STPYDAKGLLKAAIRD--EDPVVFL 171 (324)
T ss_dssp TCEEEEC---CSHHHHHHHHHHHHHC--SSCEEEE
T ss_pred CCEEEEe---CCHHHHHHHHHHHHhc--CCCEEEE
Confidence 8998866 4666666666666555 7899985
No 79
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=32.54 E-value=1.3e+02 Score=28.87 Aligned_cols=82 Identities=12% Similarity=0.040 Sum_probs=55.4
Q ss_pred ccchHHHHHHHHHHHhhC-CCeeEE-eecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc--cCCCCCCCCChhHHHHHh
Q 041265 218 VGIAEQHAVTFAAGLAAE-GLKPFC-AIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL--VGADGPTHCGAFDTTFMA 293 (309)
Q Consensus 218 ~gIaE~~~vg~a~GlA~~-G~~pi~-~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~--~g~~G~tH~~~~d~~~~~ 293 (309)
.-..|++..-+|-|.|+. |...++ .+..+=...++..|.+. -..+.|++++...... .+ .| .+|..+...+++
T Consensus 46 ~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~~~gi~~A-~~~~vPvl~itg~~~~~~~~-~~-~~Q~~d~~~~~~ 122 (549)
T 3eya_A 46 STRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFDC-HRNHVPVLAIAAHIPSSEIG-SG-YFQETHPQELFR 122 (549)
T ss_dssp ECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHH-HHTTCCEEEEEEESCGGGTT-SC-CTTCCCHHHHTS
T ss_pred EeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhhHHHHHHH-HhhCCCEEEEeCCCchhhcC-CC-CCCccCHHHHHh
Confidence 456899999999999984 654444 35666555666666654 4678999998764433 22 23 356677778888
Q ss_pred cCCCcEEEE
Q 041265 294 CLPNMVVMK 302 (309)
Q Consensus 294 ~iP~~~v~~ 302 (309)
.+-.+....
T Consensus 123 ~~tk~~~~v 131 (549)
T 3eya_A 123 ECSHYCELV 131 (549)
T ss_dssp TTCSEEEEC
T ss_pred hhhheEEEe
Confidence 877655443
No 80
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=28.89 E-value=1.2e+02 Score=26.52 Aligned_cols=31 Identities=6% Similarity=0.096 Sum_probs=25.1
Q ss_pred chhhhhcCCeEEecCCCCCHHHHHHHHHHhhc
Q 041265 129 ACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKA 160 (309)
Q Consensus 129 ~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~ 160 (309)
...|+.+||+|. ..+--+.+++.++|+++.+
T Consensus 50 ~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 80 (259)
T 3sir_A 50 TRVLKQLDFEVT-VYKDCRYKDILRTIEYSAS 80 (259)
T ss_dssp HHHHHHTTCEEE-EEEECSHHHHHHHHHHHHT
T ss_pred HHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 456899999998 6555779999999998764
No 81
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=28.38 E-value=2.8e+02 Score=26.68 Aligned_cols=91 Identities=18% Similarity=-0.012 Sum_probs=56.3
Q ss_pred CCceeeccchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc--cCCCCCC-CCC-
Q 041265 212 PIRCFDVGIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL--VGADGPT-HCG- 285 (309)
Q Consensus 212 p~r~~~~gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~--~g~~G~t-H~~- 285 (309)
+.+.+=....|++..-+|-|.|+. |...++. +..+=...++..|.+. -..+.|++++...... .+.+... |+.
T Consensus 58 ~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGpG~~N~~~gv~~A-~~~~vPll~itg~~~~~~~~~~~~~~~~~q 136 (565)
T 2nxw_A 58 QILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAFNMVNAVAGA-YAEKSPVVVISGAPGTTEGNAGLLLHHQGR 136 (565)
T ss_dssp CSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTTHHHHHHH-HHTTCCEEEEEEECCTTCC--CCCC-----
T ss_pred CCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHH-HhhCCCEEEEeCCCChhhhccCcceeeecc
Confidence 334456788999999999999985 6554543 5665555666666554 4678999998765433 2322222 333
Q ss_pred -hh-HHHHHhcCCCcEEEEe
Q 041265 286 -AF-DTTFMACLPNMVVMKD 303 (309)
Q Consensus 286 -~~-d~~~~~~iP~~~v~~P 303 (309)
.+ ...+++.+-.+....+
T Consensus 137 ~~d~q~~~~~~~~k~~~~v~ 156 (565)
T 2nxw_A 137 TLDTQFQVFKEITVAQARLD 156 (565)
T ss_dssp --CHHHHHHTTSCSCEEECC
T ss_pred chhhHHHHHHhhheEEEEeC
Confidence 33 5688888876655443
No 82
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=27.95 E-value=1.6e+02 Score=25.98 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=25.8
Q ss_pred chhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC
Q 041265 129 ACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI 161 (309)
Q Consensus 129 ~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~ 161 (309)
...|+.+||+|. ..+--+.+++.++|+++.+.
T Consensus 75 ~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~ 106 (277)
T 4ehd_A 75 RETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 106 (277)
T ss_dssp HHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhh
Confidence 457899999998 65667899999999987643
No 83
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=27.70 E-value=1e+02 Score=29.47 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=52.8
Q ss_pred ccchHHHHHHHHHHHhhC-CCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc--cCCCCCCCCChhHHHHHh
Q 041265 218 VGIAEQHAVTFAAGLAAE-GLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL--VGADGPTHCGAFDTTFMA 293 (309)
Q Consensus 218 ~gIaE~~~vg~a~GlA~~-G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~--~g~~G~tH~~~~d~~~~~ 293 (309)
....|++.+.+|.|.|+. |...++. +..+=...++..|.+. -..+.|++++...... .+. ++.++..+...+++
T Consensus 43 ~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l~~A-~~~~~Pll~itg~~~~~~~~~-~~~q~~~d~~~~~~ 120 (528)
T 1q6z_A 43 LALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNA-WNSHSPLIVTAGQQTRAMIGV-EALLTNVDAANLPR 120 (528)
T ss_dssp ECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHHHHH-HHTTCCEEEEEEECCHHHHTT-TCTTCCTTGGGSST
T ss_pred EECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHHHHH-hhcCCCEEEEeCCCcccccCC-CcccccccHHHHHH
Confidence 567999999999999985 7665554 4444455666677664 4678999998765444 232 33222245556777
Q ss_pred cCCCcEE
Q 041265 294 CLPNMVV 300 (309)
Q Consensus 294 ~iP~~~v 300 (309)
.+..+..
T Consensus 121 ~~~k~~~ 127 (528)
T 1q6z_A 121 PLVKWSY 127 (528)
T ss_dssp TSCSCEE
T ss_pred HhhHhhh
Confidence 7665543
No 84
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=27.46 E-value=1.5e+02 Score=28.86 Aligned_cols=82 Identities=16% Similarity=0.069 Sum_probs=53.5
Q ss_pred ccchHHHHHHHHHHHhh-CCCeeEE-eecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc--cCCCCCCCCChhHHHHHh
Q 041265 218 VGIAEQHAVTFAAGLAA-EGLKPFC-AIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL--VGADGPTHCGAFDTTFMA 293 (309)
Q Consensus 218 ~gIaE~~~vg~a~GlA~-~G~~pi~-~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~--~g~~G~tH~~~~d~~~~~ 293 (309)
.-..|++..-+|-|.|+ .|...++ .+..+=...++..|.+. -..+.||+++...... .+. + .+|..+...+++
T Consensus 55 ~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~~N~~~gia~A-~~~~vPvl~itG~~~~~~~~~-~-~~Q~~d~~~~~~ 131 (603)
T 4feg_A 55 QVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDA-REDHVPVLALIGQFGTTGMNM-D-TFQEMNENPIYA 131 (603)
T ss_dssp ECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHH-HHTTCCEEEEEEECCTTTTTS-C-CTTCCCCGGGGT
T ss_pred EecChHHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHHHH-HHcCCCEEEEecCCcccccCC-C-ccccccHHHHhh
Confidence 45689999999999997 4655455 35666556666666554 4678999988754333 221 2 345556667777
Q ss_pred cCCCcEEEE
Q 041265 294 CLPNMVVMK 302 (309)
Q Consensus 294 ~iP~~~v~~ 302 (309)
.+-.+....
T Consensus 132 ~~tk~~~~v 140 (603)
T 4feg_A 132 DVADYNVTA 140 (603)
T ss_dssp TTCSEEEEC
T ss_pred hhceEEEEc
Confidence 776654443
No 85
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=26.75 E-value=94 Score=30.03 Aligned_cols=86 Identities=10% Similarity=0.041 Sum_probs=56.6
Q ss_pred ceeeccchHHHHHHHHHHHhh-CCCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc--cCCCCCCCCChhHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAA-EGLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL--VGADGPTHCGAFDT 289 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~-~G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~--~g~~G~tH~~~~d~ 289 (309)
|++- -..|++..-+|-|.|+ .|...++. +..+=...++..|.+. -..+.|++++...... .+ .| .||..+..
T Consensus 48 ~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N~~~gia~A-~~d~vPll~itG~~~~~~~g-~~-~~Q~~d~~ 123 (556)
T 3hww_A 48 IHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEA-GLTGEKLILLTADRPPELID-CG-ANQAIRQP 123 (556)
T ss_dssp EEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHTTHHHHHHH-HHHCCCEEEEEEECCGGGSS-SS-CTTCCCCT
T ss_pred eEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHhhhHHHHHH-HHhCCCeEEEeCCCCHHHhc-cC-CCccccHH
Confidence 4443 5689999999999998 57655553 5666555666666554 3568999988754433 23 23 36777667
Q ss_pred HHHhcCCCcEEEEe
Q 041265 290 TFMACLPNMVVMKD 303 (309)
Q Consensus 290 ~~~~~iP~~~v~~P 303 (309)
.+++.+-.+..-.+
T Consensus 124 ~~~~~~tk~~~~v~ 137 (556)
T 3hww_A 124 GMFASHPTHSISLP 137 (556)
T ss_dssp TTTTTCSSEEEECC
T ss_pred HHHhhheeEEEecC
Confidence 77777766655443
No 86
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=26.68 E-value=2.1e+02 Score=22.59 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=25.4
Q ss_pred chhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC
Q 041265 129 ACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI 161 (309)
Q Consensus 129 ~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~ 161 (309)
...|+.+||++. ..+--..+++.+.++++.+.
T Consensus 47 ~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 47 RETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp HHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHHh
Confidence 456899999998 65667899999999877543
No 87
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=26.11 E-value=3e+02 Score=27.42 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=59.5
Q ss_pred CCcCCchhh-HhhHhhcccccccchhhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhh
Q 041265 17 FGVGHSSTS-ISAGLRTRINYFRYVGMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQL 95 (309)
Q Consensus 17 ~~~G~~g~g-ls~a~~~~~~~~~~~G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~ 95 (309)
+.+|..=++ .++|. |+|+. +--..++..+.+-.. ..++++.+++..+.|++++....+++.
T Consensus 406 ~d~GIaE~~~v~~a~----------GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~- 467 (663)
T 3kom_A 406 LSYGVREFGMAAIMN----------GLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGL- 467 (663)
T ss_dssp EECCSCHHHHHHHHH----------HHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGG-
T ss_pred EecCccHHHHHHHHH----------HHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCcccc-
Confidence 556666553 33444 66653 223335555555542 467899988888899988753332211
Q ss_pred hhhhhcccchhhccCCccc-chhhhHHhhhcCccchhhhh-cCCeEEecCCCCCHHHHHHHHHHhhc-CCCCCcEEEEE
Q 041265 96 CQEAFSSKDKKQKFGGQMH-EIDAFSREIEAGSRACFFED-LGLYYIGPVDGHNLEDLAYVLKQVKA-IPDPGAVLIHV 171 (309)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~a-~G~~~~~~vDG~D~~~l~~al~~a~~-~~~~~P~~I~~ 171 (309)
. .+++.+ .+++.. .|+. -|+.++.+. |..++..+++.+.+ . ++|++|-.
T Consensus 468 G------------~dG~THq~~ed~a----------~lr~iPnl~V~~Pa---d~~e~~~~l~~A~~~~--~~Pv~ir~ 519 (663)
T 3kom_A 468 G------------EDGPTHQPIEHVP----------SLRLIPNLSVWRPA---DTIETMIAWKEAVKSK--DTPSVMVL 519 (663)
T ss_dssp C------------TTCTTTCCSSHHH----------HHHTSTTCEEECCC---SHHHHHHHHHHHHHCS--SCCEEEEC
T ss_pred C------------CCCCCcCCHHHHH----------HHhcCCCcEEEeeC---CHHHHHHHHHHHHHhC--CCCEEEEc
Confidence 0 111111 122221 1121 378888774 55566666666554 4 78999843
No 88
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=25.64 E-value=2.8e+02 Score=27.47 Aligned_cols=96 Identities=11% Similarity=-0.006 Sum_probs=51.7
Q ss_pred hhHhHhHhcCCCCeEEEEEeCCccccchHHHHHHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCccc-chhhh
Q 041265 41 GMAVGRDLLGKNNHVISVIVEGATIARMSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQMH-EIDAF 119 (309)
Q Consensus 41 G~A~a~k~~~~~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 119 (309)
|+|+. +--..++..+.+=. -..++++.+++..+.|++++....+++. . .+++.+ .+++.
T Consensus 400 GlA~~----gG~~P~~~~f~~F~---~~~~~~ir~~a~~~~pv~~~~t~~g~g~-G------------~dG~THq~~ed~ 459 (632)
T 3l84_A 400 AFARY----GIFLPFSATFFIFS---EYLKPAARIAALMKIKHFFIFTHDSIGV-G------------EDGPTHQPIEQL 459 (632)
T ss_dssp HHHHH----SSCEEEEEEEGGGH---HHHHHHHHHHHHHTCCCEEEEECCSGGG-C------------TTCGGGSCSSHH
T ss_pred HHHHc----CCCEEEEEecHHHH---HHHHHHHHHHhccCCCEEEEEECCCcCC-C------------CCCCCCCCHhHH
Confidence 66653 22233444444433 2578899988888899988754433321 0 011111 12222
Q ss_pred HHhhhcCccchhhhh-cCCeEEecCCCCCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 120 SREIEAGSRACFFED-LGLYYIGPVDGHNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 120 ~~~~~~~~~~~~f~a-~G~~~~~~vDG~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
. .|++ -|+.++.+.| ..++..+++.+.+. ++|++|-.
T Consensus 460 a----------~lr~iP~l~V~~P~d---~~e~~~~l~~A~~~--~~Pv~ir~ 497 (632)
T 3l84_A 460 S----------TFRAMPNFLTFRPAD---GVENVKAWQIALNA--DIPSAFVL 497 (632)
T ss_dssp H----------HHHHSSSCEEECCSS---HHHHHHHHHHHHHC--SSCEEEEC
T ss_pred H----------HHhcCCCCEEEecCC---HHHHHHHHHHHHhC--CCCEEEEE
Confidence 1 1222 4889987754 55555555555544 78998853
No 89
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=25.13 E-value=1.1e+02 Score=27.59 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=25.4
Q ss_pred chhhhhcCCeEEecCCCCCHHHHHHHHHHhhcC
Q 041265 129 ACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKAI 161 (309)
Q Consensus 129 ~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~~ 161 (309)
...|+.+||+|. ...--+.+++.++|+++.+.
T Consensus 100 ~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 131 (305)
T 1f1j_A 100 FKCFRSLGFDVI-VYNDCSCAKMQDLLKKASEE 131 (305)
T ss_dssp HHHHHHHTEEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCEEE-EecCcCHHHHHHHHHHHHHh
Confidence 456899999998 55557899999999987543
No 90
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=25.11 E-value=2.7e+02 Score=27.73 Aligned_cols=77 Identities=9% Similarity=0.134 Sum_probs=43.1
Q ss_pred hHHHHHHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcc-cchhhhHHhhhcCccchhhhh-cCCeEEecCCC
Q 041265 68 MSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQM-HEIDAFSREIEAGSRACFFED-LGLYYIGPVDG 145 (309)
Q Consensus 68 ~~~EAln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~a-~G~~~~~~vDG 145 (309)
..++++.+++..+.|++++....+++. . ..++. +.+++.. .|++ -|+.++.+.
T Consensus 448 ~~~~air~~a~~~lpvv~v~t~~g~g~-G------------~dG~tHq~~edla----------~lr~iP~l~V~~Pa-- 502 (680)
T 1gpu_A 448 YAAGAVRLSALSGHPVIWVATHDSIGV-G------------EDGPTHQPIETLA----------HFRSLPNIQVWRPA-- 502 (680)
T ss_dssp GGHHHHHHHHHHTCCCEEEEECCSGGG-C------------TTCTTTCCSSHHH----------HHHTSSSCEEECCC--
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCcccc-C------------CCCCccCCHHHHH----------HhcCCCCCEEEecC--
Confidence 468889998888899988864433321 0 01111 1222221 1232 488888775
Q ss_pred CCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 146 HNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 146 ~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
|..++..+++.+.+.. ++|++|..
T Consensus 503 -d~~e~~~~l~~A~~~~-~~Pv~i~~ 526 (680)
T 1gpu_A 503 -DGNEVSAAYKNSLESK-HTPSIIAL 526 (680)
T ss_dssp -SHHHHHHHHHHHHHCS-SCCEEEEC
T ss_pred -CHHHHHHHHHHHHHhC-CCcEEEEe
Confidence 4555555555554421 67999853
No 91
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=24.55 E-value=84 Score=24.20 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=22.1
Q ss_pred hhhcCCeEE-ecCCCC----C---HHHHHHHHHHhhcCCCCCcEEEEEEe
Q 041265 132 FEDLGLYYI-GPVDGH----N---LEDLAYVLKQVKAIPDPGAVLIHVIT 173 (309)
Q Consensus 132 f~a~G~~~~-~~vDG~----D---~~~l~~al~~a~~~~~~~P~~I~~~T 173 (309)
++..|++++ -+++.+ . +.+..+.++.+.+. ++|++|||..
T Consensus 51 ~~~~gi~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~--~~~vlVHC~~ 98 (157)
T 3rgo_A 51 WKKAGVEQLRLSTVDMTGVPTLANLHKGVQFALKYQAL--GQCVYVHCKA 98 (157)
T ss_dssp HHHTTCEEEEECCCTTTSSCCHHHHHHHHHHHHHHHHT--TCEEEEESSS
T ss_pred HHHCCCeEEEecCCCCCCCChHHHHHHHHHHHHHHHHC--CCEEEEECCC
Confidence 455566665 133332 1 33444445555554 6799998865
No 92
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=24.23 E-value=4.6e+02 Score=26.06 Aligned_cols=77 Identities=9% Similarity=0.088 Sum_probs=42.6
Q ss_pred hHHHHHHHHhhccCcEEEEEeCcchhhhhhhhhcccchhhccCCcc-cchhhhHHhhhcCccchhhhh-cCCeEEecCCC
Q 041265 68 MSYEAINNAGVLNKALKRLHSNPQFRQLCQEAFSSKDKKQKFGGQM-HEIDAFSREIEAGSRACFFED-LGLYYIGPVDG 145 (309)
Q Consensus 68 ~~~EAln~A~~~~~~Li~i~~nn~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~a-~G~~~~~~vDG 145 (309)
-.++++.+++..+.|++++....+++. . ..++. +.+++.. .|++ -|+.++.+.|
T Consensus 440 ~~~~~ir~~a~~~~pvv~~~t~~g~g~-G------------~dG~tHq~~edla----------~lr~iP~l~V~~Pad- 495 (673)
T 1r9j_A 440 YALGAVRLAAISHHRVIYVATHDSIGV-G------------EDGPTHQPVELVA----------ALRAMPNLQVIRPSD- 495 (673)
T ss_dssp GGHHHHHHHHHHTCCCEEEEECCSGGG-C------------TTCTTTCCSSHHH----------HHHHSTTCEEECCSS-
T ss_pred HHHHHHHHHHhcCCCEEEEEECCccCc-C------------CCCcccCCHHHHH----------HHcCCCCCEEEeCCC-
Confidence 567889999988899888764433321 0 01111 1222221 1222 3788887754
Q ss_pred CCHHHHHHHHHHhhcCCCCCcEEEEE
Q 041265 146 HNLEDLAYVLKQVKAIPDPGAVLIHV 171 (309)
Q Consensus 146 ~D~~~l~~al~~a~~~~~~~P~~I~~ 171 (309)
..++..+++.+.+.. ++|++|..
T Consensus 496 --~~e~~~~l~~a~~~~-~~Pv~i~~ 518 (673)
T 1r9j_A 496 --QTETSGAWAVALSSI-HTPTVLCL 518 (673)
T ss_dssp --HHHHHHHHHHHHHCT-TCCEEEEC
T ss_pred --HHHHHHHHHHHHHhC-CCeEEEEE
Confidence 555555555554321 67999854
No 93
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=23.16 E-value=85 Score=25.89 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=24.3
Q ss_pred chhhhhcCCeEEecCCCCCHHHHHHHHHHhh
Q 041265 129 ACFFEDLGLYYIGPVDGHNLEDLAYVLKQVK 159 (309)
Q Consensus 129 ~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~ 159 (309)
...|+.+||++. ...--+.+++.++++++.
T Consensus 71 ~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~ 100 (178)
T 2h54_A 71 TMLLQNLGYSVD-VKKNLTASDMTTELEAFA 100 (178)
T ss_dssp HHHHHHTTCEEE-EEESCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEE-EecCCCHHHHHHHHHHHH
Confidence 456899999998 555578999999998864
No 94
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=21.68 E-value=1.8e+02 Score=28.11 Aligned_cols=86 Identities=12% Similarity=0.007 Sum_probs=55.3
Q ss_pred eeccchHHHHHHHHHHHhh-CCCeeEEe-ecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc--cCCCCCCCCCh-----
Q 041265 216 FDVGIAEQHAVTFAAGLAA-EGLKPFCA-IYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL--VGADGPTHCGA----- 286 (309)
Q Consensus 216 ~~~gIaE~~~vg~a~GlA~-~G~~pi~~-~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~--~g~~G~tH~~~----- 286 (309)
+-....|++.+-+|.|.|+ .| ..++. +..+=...++..|.+. -..+.|++++...... .+.+...||..
T Consensus 66 ~i~~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N~~~gi~~A-~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~ 143 (570)
T 2vbf_A 66 WIGNANELNASYMADGYARTKK-AAAFLTTFGVGELSAINGLAGS-YAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDF 143 (570)
T ss_dssp EEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHHHHH-HHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCC
T ss_pred EECcCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHHHHHHHHHH-hhhCCCEEEEeCCCCHHHhhccccceeeccccch
Confidence 3456789999999999996 58 54543 5666666667777654 4678999998765443 22223345421
Q ss_pred -hHHHHHhcCCCcEEEEe
Q 041265 287 -FDTTFMACLPNMVVMKD 303 (309)
Q Consensus 287 -~d~~~~~~iP~~~v~~P 303 (309)
+...+++.+.......+
T Consensus 144 ~~~~~~~~~~tk~~~~v~ 161 (570)
T 2vbf_A 144 KHFMKMHEPVTAARTLLT 161 (570)
T ss_dssp CHHHHHTGGGCSEEEECC
T ss_pred HHHHHHhhhhEEEEEEEC
Confidence 24577777776554443
No 95
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=21.52 E-value=97 Score=25.19 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=24.9
Q ss_pred CCeEEEEEeCCccccchHHHHHHHHhhccCcEEEE
Q 041265 52 NNHVISVIVEGATIARMSYEAINNAGVLNKALKRL 86 (309)
Q Consensus 52 ~~~v~~~~GDG~l~eG~~~EAln~A~~~~~~Li~i 86 (309)
..++++++.||.-+.+...+++..+...+-.+..|
T Consensus 111 ~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~i 145 (218)
T 3ibs_A 111 VGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVL 145 (218)
T ss_dssp CCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEE
T ss_pred CCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEE
Confidence 45799999999999997777776665444344444
No 96
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=20.98 E-value=1.5e+02 Score=28.96 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=55.6
Q ss_pred ceeeccchHHHHHHHHHHHhhC-CCeeEE-eecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc--cCCCCCCCCChhHH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAE-GLKPFC-AIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL--VGADGPTHCGAFDT 289 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~-G~~pi~-~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~--~g~~G~tH~~~~d~ 289 (309)
|++. ...|++..-+|-|.|+. |...+| .+..+=...++..|.+. -..+.|++++...... .+. | .+|..+..
T Consensus 71 ~~i~-~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~~gia~A-~~~~vPlv~ItG~~~~~~~g~-~-~~Q~~d~~ 146 (604)
T 2x7j_A 71 SVHV-QIDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAVVEA-HYSRVPIIVLTADRPHELREV-G-APQAINQH 146 (604)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTTHHHHHHH-HHHTCCEEEEEEECCGGGSSS-C-CTTCCCCT
T ss_pred eEEE-ecChHHHHHHHHHHHHhhCCCEEEEECChhHHHHHHHHHHHH-hhcCCCEEEEeCCCCHHHhCC-C-CCCcCcHH
Confidence 4444 47899999999999985 654444 35666555666666554 3568999988754433 232 2 35666666
Q ss_pred HHHhcCCCcEEEE
Q 041265 290 TFMACLPNMVVMK 302 (309)
Q Consensus 290 ~~~~~iP~~~v~~ 302 (309)
.+++.+-.+....
T Consensus 147 ~~~~~~tk~~~~v 159 (604)
T 2x7j_A 147 FLFGNFVKFFTDS 159 (604)
T ss_dssp TTTGGGSSCEEEC
T ss_pred HHhhhheeeeeec
Confidence 7887777665444
No 97
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=20.60 E-value=2e+02 Score=25.09 Aligned_cols=31 Identities=10% Similarity=0.061 Sum_probs=24.6
Q ss_pred chhhhhcCCeEEecCCCCCHHHHHHHHHHhhc
Q 041265 129 ACFFEDLGLYYIGPVDGHNLEDLAYVLKQVKA 160 (309)
Q Consensus 129 ~~~f~a~G~~~~~~vDG~D~~~l~~al~~a~~ 160 (309)
...|+.+||+|. ..+--+.+++.++|+++.+
T Consensus 52 ~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 82 (277)
T 1nw9_B 52 RRRFSSLHFMVE-VKGDLTAKKMVLALLELAR 82 (277)
T ss_dssp HHHHHHTTEEEE-EEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEE-EEcCCCHHHHHHHHHHHHH
Confidence 456899999998 6555778999999987654
No 98
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=20.23 E-value=2.5e+02 Score=26.91 Aligned_cols=87 Identities=13% Similarity=0.030 Sum_probs=58.5
Q ss_pred ceeeccchHHHHHHHHHHHhhC-CCeeEE-eecHHHHHhHHHHHHHhhhhCCCCeEEEEeCCCc--cCC-CCCCCCChhH
Q 041265 214 RCFDVGIAEQHAVTFAAGLAAE-GLKPFC-AIYSSFLQRCFDQVAHDVDLQKLPVRFAIDRAGL--VGA-DGPTHCGAFD 288 (309)
Q Consensus 214 r~~~~gIaE~~~vg~a~GlA~~-G~~pi~-~~~~~F~~ra~dqi~~~~a~~~~pv~~~~~~~g~--~g~-~G~tH~~~~d 288 (309)
|++. ...|++..-+|-|.|+. |.-.++ .+..+=...++..|.+. -..+.|++++...... .+. .| .+|..+.
T Consensus 47 ~~i~-~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~~~gi~~A-~~~~vPll~itg~~~~~~~~~~~~-~~Q~~dq 123 (564)
T 2q28_A 47 RYIG-FRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTALANA-TVNGFPMIMISGSSDRAIVDLQQG-DYEELDQ 123 (564)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHHHHH-HHHTCCEEEEEEECCHHHHHTTSC-CTTCCCH
T ss_pred cEEe-eCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHHHHHHHHH-HhcCCCEEEEeCCCCccccCCCCC-ccccccH
Confidence 4444 48999999999999986 554444 45666556666666554 4578999988765444 121 23 3667777
Q ss_pred HHHHhcCCCcEEEEe
Q 041265 289 TTFMACLPNMVVMKD 303 (309)
Q Consensus 289 ~~~~~~iP~~~v~~P 303 (309)
..+++.+-.+.+..+
T Consensus 124 ~~~~~~~tk~~~~v~ 138 (564)
T 2q28_A 124 MNAAKPYAKAAFRVN 138 (564)
T ss_dssp HHHHGGGSSEEEECC
T ss_pred HHHHHHhhheeeecC
Confidence 789998877655443
No 99
>1njh_A Protein YOJF; structural genomics, PSI, protein structure initiative center for structural genomics, MCSG, unknown function; 1.70A {Bacillus subtilis} SCOP: b.128.1.1
Probab=20.13 E-value=1.2e+02 Score=23.39 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHhhcCCCCCcEEEEEEeeecc
Q 041265 147 NLEDLAYVLKQVKAIPDPGAVLIHVITEKEK 177 (309)
Q Consensus 147 D~~~l~~al~~a~~~~~~~P~~I~~~T~kg~ 177 (309)
+.+++.+.|++.. ++|+.||+.|.-|-
T Consensus 8 ~~~~VQ~~L~~f~----~~~VYiHlETTnGA 34 (119)
T 1njh_A 8 IKEDVQASLERYA----DRPVYIHLETTTGS 34 (119)
T ss_dssp CHHHHHHHHHHTT----TSCEEEEEEEEECC
T ss_pred CHHHHHHHHHHhc----CCceEEEEEecCch
Confidence 6777888888776 56999999998764
Done!