BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041268
         (217 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EBT|A Chain A, Crystal Structure Of A Ntf2-Like Protein Of Unknown
           Function (Bpss0132) From Burkholderia Pseudomallei
           K96243 At 1.30 A Resolution
          Length = 132

 Score = 26.9 bits (58), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 15/123 (12%)

Query: 51  NKNQRVVLALYDALKSRDVETVHKILAPDLEW--------WFHGPPTH------QFMMHL 96
           + N + V   Y+A   RD+  V   LAPD+ W        +  G   H       F+ H+
Sbjct: 3   SNNXQTVRESYEAFHRRDLPGVLAALAPDVRWTHPDGXSPYGLGGTKHGHDEVIAFIRHV 62

Query: 97  LTGXXXXXXXXXXXFVFVPLSITSFGPIVLAEGCDHSRQISWVHAWTVADGIITQVREYF 156
            T            F+     I   G   +      S  + +VH W   +G      ++F
Sbjct: 63  PT-HIAEXRLAPDEFIESGERIVVLGTRRVTAVNGRSATLKFVHVWRFENGRAVTFEDHF 121

Query: 157 NTS 159
           +T+
Sbjct: 122 DTA 124


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,195,238
Number of Sequences: 62578
Number of extensions: 213358
Number of successful extensions: 364
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 5
length of query: 217
length of database: 14,973,337
effective HSP length: 95
effective length of query: 122
effective length of database: 9,028,427
effective search space: 1101468094
effective search space used: 1101468094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)