BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041268
         (217 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P20144|WUN1_SOLTU Wound-induced protein 1 OS=Solanum tuberosum GN=WUN1 PE=2 SV=1
          Length = 105

 Score =  133 bits (335), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 73/124 (58%), Positives = 84/124 (67%), Gaps = 19/124 (15%)

Query: 94  MHLLTGSTTASSASQSSFVFVPLSITSFGPIVLAEGCDHSRQISWVHAWTVADGIITQVR 153
           M +LTG+    +AS   F F+  +I  FG +VL EGCD +R I+WVHAWTV DG+ITQVR
Sbjct: 1   MQILTGTAKFDNAS---FQFLHKTIDVFGSVVLVEGCDPTRSITWVHAWTVTDGVITQVR 57

Query: 154 EYFNTSLTVTRFGKDLSGQSQRKKSPPSDFPSTAEINPVHCPSVWESSVSNRDGKSVPGL 213
           EYFNTSLTVTRFGK             SD  S   I  +HCPSVWESS+ NR GKSVPGL
Sbjct: 58  EYFNTSLTVTRFGK-------------SDISS---ITTLHCPSVWESSLPNRVGKSVPGL 101

Query: 214 VLAL 217
           VLAL
Sbjct: 102 VLAL 105


>sp|O08841|QSOX1_CAVPO Sulfhydryl oxidase 1 OS=Cavia porcellus GN=QSOX1 PE=2 SV=2
          Length = 613

 Score = 32.0 bits (71), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 8/55 (14%)

Query: 13  SQNKFISFPVSLFLLFHFLRLFRQELANSQQKNPEDSEN--KNQRVVLALYDALK 65
           S++ F  FP SL++LFHFL +       + QKN E S+     Q V+ A+ + ++
Sbjct: 397 SESHFRGFPCSLWILFHFLTV------QASQKNAESSQKPANGQEVLQAIRNYVR 445


>sp|Q8NQ42|KGUA_CORGL Guanylate kinase OS=Corynebacterium glutamicum (strain ATCC 13032 /
           DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=gmk
           PE=3 SV=2
          Length = 190

 Score = 31.6 bits (70), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 45  NPEDSENKNQRVVLALYDALKSRDVETVHKILAPDLEWWFHGPPTHQFMMHLLTGSTTAS 104
            P +   +N R VL   D   +R++ +    L PD E  F  PP+ + ++  LTG  T S
Sbjct: 91  GPVNEARQNGRPVLVEVDLAGARNIAS----LIPDAETIFLAPPSWEVLVERLTGRGTES 146


>sp|Q33884|CCF2_ARATH Putative cytochrome c biogenesis ccmF C-terminal-like mitochondrial
           protein 3 (Fragment) OS=Arabidopsis thaliana GN=CCMFN2
           PE=1 SV=2
          Length = 203

 Score = 30.8 bits (68), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 115 PLSITSFGPIVLAEGCDHSRQISWVHAWTVADGIIT 150
           P+   SF P VLA  C HS  + ++H+WT+   I+T
Sbjct: 78  PVENASFMPWVLATACIHSVILPFLHSWTLFLNIVT 113


>sp|Q6IUU3|QSOX1_RAT Sulfhydryl oxidase 1 OS=Rattus norvegicus GN=Qsox1 PE=1 SV=1
          Length = 750

 Score = 30.4 bits (67), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 13  SQNKFISFPVSLFLLFHFLRLFRQELANSQQKNPEDSENKNQRVVLALYDALKSRDV 69
           S+  F  FP SL++LFHFL +     + +  + P D +   Q +   +      RD 
Sbjct: 399 SEPHFRGFPCSLWVLFHFLTVQAHRYSEAHPQEPADGQEVLQAMRSYVQSFFGCRDC 455


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.132    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,708,310
Number of Sequences: 539616
Number of extensions: 3215494
Number of successful extensions: 7100
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7095
Number of HSP's gapped (non-prelim): 9
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)