Query 041268
Match_columns 217
No_of_seqs 164 out of 1111
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:26:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07107 WI12: Wound-induced p 100.0 3E-34 6.5E-39 218.9 6.0 109 94-217 1-109 (109)
2 COG3631 Ketosteroid isomerase- 99.7 1E-16 2.2E-21 127.8 14.2 114 50-167 3-132 (133)
3 PF07858 LEH: Limonene-1,2-epo 99.7 3.3E-15 7.2E-20 117.9 15.6 110 52-165 2-123 (125)
4 TIGR02096 conserved hypothetic 99.7 3E-15 6.5E-20 115.4 15.0 108 55-166 2-129 (129)
5 PRK08241 RNA polymerase factor 99.6 2.2E-14 4.8E-19 128.9 16.3 117 46-167 209-333 (339)
6 TIGR02960 SigX5 RNA polymerase 99.6 1.2E-13 2.5E-18 123.1 15.6 113 48-166 201-323 (324)
7 PF07366 SnoaL: SnoaL-like pol 99.5 2.8E-13 6.1E-18 104.7 13.7 106 56-165 2-126 (126)
8 PF12680 SnoaL_2: SnoaL-like d 99.5 5.4E-13 1.2E-17 96.7 12.1 92 57-152 1-102 (102)
9 cd00781 ketosteroid_isomerase 99.5 2E-13 4.4E-18 104.5 9.7 107 50-160 2-119 (122)
10 PRK09636 RNA polymerase sigma 99.3 3.4E-10 7.4E-15 100.2 16.5 110 48-162 168-287 (293)
11 COG4308 LimA Limonene-1,2-epox 99.2 7.6E-11 1.6E-15 91.6 10.0 114 48-165 3-126 (130)
12 COG4922 Uncharacterized protei 99.0 3.6E-09 7.7E-14 81.8 9.2 103 49-157 3-114 (129)
13 TIGR02957 SigX4 RNA polymerase 99.0 3.1E-08 6.8E-13 87.4 15.8 107 49-162 162-278 (281)
14 COG5485 Predicted ester cyclas 98.9 2E-08 4.4E-13 78.5 9.9 107 55-166 10-131 (131)
15 PRK09635 sigI RNA polymerase s 98.6 6.5E-07 1.4E-11 79.7 13.3 106 49-163 172-282 (290)
16 PF03284 PHZA_PHZB: Phenazine 98.5 7.9E-07 1.7E-11 71.5 9.9 115 50-169 17-152 (162)
17 COG4538 Uncharacterized conser 98.3 1.7E-05 3.7E-10 59.9 11.7 97 53-154 5-109 (112)
18 PF14534 DUF4440: Domain of un 98.3 1.7E-05 3.7E-10 57.8 11.3 91 54-148 2-104 (107)
19 PF13474 SnoaL_3: SnoaL-like d 98.1 0.00011 2.3E-09 55.1 12.6 98 54-153 2-115 (121)
20 TIGR02246 conserved hypothetic 98.1 0.00012 2.7E-09 55.5 12.8 79 50-129 3-85 (128)
21 cd00531 NTF2_like Nuclear tran 97.7 0.0028 6.2E-08 46.2 13.2 101 54-157 2-124 (124)
22 COG4319 Ketosteroid isomerase 97.6 0.00047 1E-08 55.2 9.3 78 51-129 10-90 (137)
23 PF12893 Lumazine_bd_2: Putati 96.9 0.019 4E-07 43.8 11.0 77 51-128 4-85 (116)
24 PF13577 SnoaL_4: SnoaL-like d 96.6 0.11 2.5E-06 38.9 12.9 76 50-128 6-87 (127)
25 PF07080 DUF1348: Protein of u 96.6 0.084 1.8E-06 42.3 12.2 107 50-160 9-125 (143)
26 PF08332 CaMKII_AD: Calcium/ca 95.3 1 2.2E-05 35.7 13.3 98 53-153 5-123 (128)
27 PF02136 NTF2: Nuclear transpo 92.9 3 6.5E-05 31.1 12.3 50 54-103 3-56 (118)
28 PF12870 Lumazine_bd: Lumazine 92.5 0.15 3.2E-06 37.4 3.4 33 49-81 5-37 (111)
29 cd00780 NTF2 Nuclear transport 91.2 3.2 7E-05 31.5 9.7 85 53-144 6-101 (119)
30 COG4875 Uncharacterized protei 88.9 7.7 0.00017 31.0 10.0 52 49-100 35-90 (156)
31 PF10184 DUF2358: Uncharacteri 88.2 9.6 0.00021 29.0 11.6 81 66-151 16-112 (113)
32 PRK10069 3-phenylpropionate di 87.7 15 0.00032 30.4 13.4 31 55-85 24-54 (183)
33 PF11533 DUF3225: Protein of u 86.1 4.2 9.1E-05 32.2 7.1 69 53-125 12-84 (125)
34 cd00667 ring_hydroxylating_dio 84.2 1.3 2.9E-05 35.2 3.7 33 54-86 7-39 (160)
35 TIGR03231 anthran_1_2_B anthra 79.0 2.8 6.1E-05 34.0 3.8 31 56-86 4-34 (155)
36 TIGR03232 benzo_1_2_benB benzo 75.6 2.7 5.8E-05 34.2 2.8 23 64-86 12-34 (155)
37 PF05223 MecA_N: NTF2-like N-t 75.4 2.3 4.9E-05 32.6 2.2 29 52-80 2-30 (118)
38 PF00866 Ring_hydroxyl_B: Ring 65.0 5.5 0.00012 31.7 2.4 24 63-86 5-28 (145)
39 PF11453 DUF2950: Protein of u 59.9 32 0.00069 30.8 6.4 52 51-102 5-57 (271)
40 COG5517 Small subunit of pheny 48.3 13 0.00028 30.7 1.9 24 63-86 20-43 (164)
41 PF11006 DUF2845: Protein of u 42.7 33 0.00071 24.9 3.2 19 136-154 67-85 (87)
42 COG4395 Uncharacterized protei 40.4 9.2 0.0002 34.3 -0.0 30 51-80 154-183 (281)
43 COG4460 Uncharacterized protei 37.0 1.3E+02 0.0028 23.6 5.8 58 57-118 16-75 (130)
44 PF04280 Tim44: Tim44-like dom 36.7 19 0.00042 28.0 1.3 29 52-80 23-51 (147)
45 PF10055 DUF2292: Uncharacteri 36.6 60 0.0013 20.4 3.2 15 139-153 17-31 (38)
46 PLN02382 probable sucrose-phos 36.5 2.6E+02 0.0056 26.2 9.0 72 53-128 284-371 (413)
47 PF09697 Porph_ging: Protein o 33.9 20 0.00044 25.4 0.9 7 209-215 63-69 (70)
48 COG3558 Uncharacterized protei 30.5 23 0.00049 28.2 0.7 53 50-102 11-65 (154)
49 PF08869 XisI: XisI protein; 30.1 1.2E+02 0.0025 23.5 4.6 44 124-167 42-86 (111)
50 TIGR03580 EF_0832 conserved hy 29.9 24 0.00052 30.0 0.8 21 197-217 148-172 (233)
51 PF14188 DUF4311: Domain of un 26.4 31 0.00066 29.1 0.9 13 205-217 161-173 (213)
52 PF15631 Imm-NTF2-2: NTF2 fold 25.4 1.8E+02 0.0039 20.5 4.5 41 113-153 21-63 (66)
53 PF02607 B12-binding_2: B12 bi 23.6 59 0.0013 22.4 1.8 27 54-80 2-28 (79)
54 TIGR00984 3a0801s03tim44 mitoc 22.6 57 0.0012 30.6 2.0 26 55-80 253-278 (378)
55 PF10437 Lip_prot_lig_C: Bacte 20.5 1.4E+02 0.0031 21.1 3.3 18 141-158 21-38 (86)
No 1
>PF07107 WI12: Wound-induced protein WI12; InterPro: IPR009798 This entry consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum (Common ice plant) (Q9XES3 from SWISSPROT). Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development [].
Probab=100.00 E-value=3e-34 Score=218.93 Aligned_cols=109 Identities=61% Similarity=1.083 Sum_probs=90.7
Q ss_pred HHHHhhhhhccccCCCceEEEEEEEEEeCCEEEEEeeCCceeecEEEEEEEECCEEEEEEEEeCHHHHHHHhcCCCCCcc
Q 041268 94 MHLLTGSTTASSASQSSFVFVPLSITSFGPIVLAEGCDHSRQISWVHAWTVADGIITQVREYFNTSLTVTRFGKDLSGQS 173 (217)
Q Consensus 94 ~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd~VvveG~~g~~~~~~v~vftv~DGkIteireY~Dt~~lv~~lg~~~~~~~ 173 (217)
|++|+|.... ...|+|.|++|.+.|++|+|||.+.....+|||+||++||+||++||||||..+|+.++..+.+.
T Consensus 1 MrlLTG~~~~----~~sF~F~P~sV~afG~~ViaEG~~~~~~~yWVHaWTV~dGiITqlREYFNT~ltVt~l~~~~~~~- 75 (109)
T PF07107_consen 1 MRLLTGASTS----SSSFRFVPRSVDAFGSTVIAEGCDETRSVYWVHAWTVKDGIITQLREYFNTSLTVTRLGPGASGS- 75 (109)
T ss_pred CeeeeCCCCC----cCcEEEeccEEEEECCEEEEecccCcCcEEEEEEEEecCCEEEeeeeeeeeEEEEEeccccCCcc-
Confidence 5678885432 36899999999999999999997666689999999999999999999999999999999754321
Q ss_pred ccCCCCCCCCCCCCccCCCCCCcccccccCCCCCCCCCceeeeC
Q 041268 174 QRKKSPPSDFPSTAEINPVHCPSVWESSVSNRDGKSVPGLVLAL 217 (217)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~~~~~~~pglvlai 217 (217)
.+.+.....+|++||||+++|+++||||||||||
T Consensus 76 ----------~~~~~~~~~~~~~vWqS~~~d~~~~SlPGLVLAI 109 (109)
T PF07107_consen 76 ----------SSSDSAPSSHCPCVWQSRLPDRAGKSLPGLVLAI 109 (109)
T ss_pred ----------cccccccCCCCCceecccccccccCCcCCEEEeC
Confidence 1111223467888999999999999999999998
No 2
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=99.73 E-value=1e-16 Score=127.80 Aligned_cols=114 Identities=23% Similarity=0.242 Sum_probs=93.0
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcCCC--------cHHHHHHHHhhhhhccccCCCceEEEEEEEEEe
Q 041268 50 ENKNQRVVLALYDALKSRDVETVHKILAPDLEWWFHGPP--------THQFMMHLLTGSTTASSASQSSFVFVPLSITSF 121 (217)
Q Consensus 50 ~~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp~--------G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~ 121 (217)
+++|+++|+++|+|+.+||.+.+.+|+++|++|+.+|.+ |.+....++...... ....++++..++.+
T Consensus 3 ~~~~~~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~r~----~~~~~~~~~~~~~~ 78 (133)
T COG3631 3 EMDNTDLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLPRL----IEDGRFTVETVYVS 78 (133)
T ss_pred cchhhhHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhChhh----cccccccceEEEEc
Confidence 778999999999999999999999999999999998842 344445555555443 35678899999999
Q ss_pred CCEEEEEee-------CCce-eecEEEEEEEECCEEEEEEEEeCHHHHHHHhcC
Q 041268 122 GPIVLAEGC-------DHSR-QISWVHAWTVADGIITQVREYFNTSLTVTRFGK 167 (217)
Q Consensus 122 Gd~VvveG~-------~g~~-~~~~v~vftv~DGkIteireY~Dt~~lv~~lg~ 167 (217)
||.+++.+. .|+. ...++++++++||||+++++|+|+..+.+++|+
T Consensus 79 gD~~~~v~~~~~~~~~~G~~~~~~~~~v~~vrdGrI~~~~~y~D~~~~~~a~~~ 132 (133)
T COG3631 79 GDPVGAVFRTRGRVSRTGKPYENRYAFVIRVRDGRITRYREYVDTLALAEALGG 132 (133)
T ss_pred CCceEEEEEecCcccccCceeecceEEEEEEeCCEEEEEEEEechHhHHHHhcC
Confidence 999885531 3443 455677999999999999999999999999986
No 3
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=99.67 E-value=3.3e-15 Score=117.89 Aligned_cols=110 Identities=27% Similarity=0.300 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHhcCCHH-HHHhhccCCEEEEEcCC---CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEeCCEEEE
Q 041268 52 KNQRVVLALYDALKSRDVE-TVHKILAPDLEWWFHGP---PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSFGPIVLA 127 (217)
Q Consensus 52 ~nk~lV~~fyeA~~~gD~e-~l~aLlA~Dvvw~~~Gp---~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd~Vvv 127 (217)
+|.++|++|++|+..+|++ ++..++++|++|+..|- .|++.++++|.++... ...+.++++++.++|+.|+.
T Consensus 2 ~~~~vV~~F~~a~~~~D~~~a~~~~~~~d~vy~Nvplp~i~G~~~~~~~l~~~~~~----~~~~e~~i~~iaadg~~Vlt 77 (125)
T PF07858_consen 2 TPEEVVRAFLAALEDRDVDAALASLFDDDAVYHNVPLPPIRGRDAIRAFLRGFLDS----LSGFEFDIHRIAADGDVVLT 77 (125)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHCEECC-EEEETTTEEEESHHHHHHHHHCCHCC----CEEEEEEEEEEEEETTEEEE
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHhcCCCcEEEeCCCCCcccHHHHHHHHHHHhcc----cceeEEEEEEEeecCCEEEE
Confidence 5899999999999999976 56789999999998873 4999999999998443 46788999999999999999
Q ss_pred Ee-----e-CC-ceeecEEE-EEEEECCEEEEEEEEeCHHHHHHHh
Q 041268 128 EG-----C-DH-SRQISWVH-AWTVADGIITQVREYFNTSLTVTRF 165 (217)
Q Consensus 128 eG-----~-~g-~~~~~~v~-vftv~DGkIteireY~Dt~~lv~~l 165 (217)
|- . +| ....-||+ +|+|+||||+.||+|||...+..++
T Consensus 78 ER~D~l~~~dG~~~~~~~V~GvfEv~dGkI~~WRDYFD~~~~~~a~ 123 (125)
T PF07858_consen 78 ERTDVLRFADGPLRIQFPVCGVFEVRDGKITLWRDYFDLADFLKAT 123 (125)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEEETTEEEEEEEE--HHHHHHHH
T ss_pred EeEeeeeeecCCeEEEEEEEEEEEEECCEEEEEeccCCHHHHHHHh
Confidence 94 2 35 34455677 9999999999999999999888764
No 4
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=99.67 E-value=3e-15 Score=115.38 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCHHHHHhhccCCEEEEEcCC----CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEeCC-EEEEEe
Q 041268 55 RVVLALYDALKSRDVETVHKILAPDLEWWFHGP----PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSFGP-IVLAEG 129 (217)
Q Consensus 55 ~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp----~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd-~VvveG 129 (217)
+++++||+|++++|++.+.++++||++|..+++ .|++.+.+++...... .+++++++.+++..++ .|+++.
T Consensus 2 ~iv~~~~~a~~~~d~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~v~~~~ 77 (129)
T TIGR02096 2 ELAQHWIEAFNRGDMDAVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTA----FPDLLVDVVVCRNDEGVRVAAEW 77 (129)
T ss_pred HHHHHHHHHHHCCCHHHHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHh----CchhhceeEEEEecCCcEEEEEE
Confidence 689999999999999999999999999998763 3588888888887665 3677888888877665 888873
Q ss_pred e--------------CCc-eeecEEEEEEEECCEEEEEEEEeCHHHHHHHhc
Q 041268 130 C--------------DHS-RQISWVHAWTVADGIITQVREYFNTSLTVTRFG 166 (217)
Q Consensus 130 ~--------------~g~-~~~~~v~vftv~DGkIteireY~Dt~~lv~~lg 166 (217)
. .|. .....+++|+|+||||+++++|+|+..+.+++|
T Consensus 78 ~~~g~~~g~~~g~~~~g~~~~~~~~~~~~~~~gkI~~~~~y~D~~~~~~qlg 129 (129)
T TIGR02096 78 TVHGTYRTAFLGLPASGKTYSIRGVTFFVFDDGKIKRETTYYNLATFLRQLG 129 (129)
T ss_pred EEeeeeccccCCCCCCCCEEEeeeeEEEEEeCCEEEEEEEEecHHHHHHhhC
Confidence 1 222 345678899999999999999999999999986
No 5
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=99.61 E-value=2.2e-14 Score=128.87 Aligned_cols=117 Identities=18% Similarity=0.282 Sum_probs=92.0
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcCC----CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEe
Q 041268 46 PEDSENKNQRVVLALYDALKSRDVETVHKILAPDLEWWFHGP----PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSF 121 (217)
Q Consensus 46 ~~~~~~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp----~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~ 121 (217)
.....+.++++|++||+|+++||++++.+||+||++|+.++. .|++.+..++.+..... ....+++. ..+++
T Consensus 209 ~~~~~~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~--~~~~~~~~--~~~~~ 284 (339)
T PRK08241 209 REPDDPEERALLARYVAAFEAYDVDALVALLTEDATWSMPPFPLWYRGRDAIAAFLAGQCPGA--GCGGSRLV--PTRAN 284 (339)
T ss_pred CCCCChHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEEcCCCCCcccCHHHHHHHHHhhcccc--CCCceEEE--EeecC
Confidence 334568899999999999999999999999999999998763 37889999998863220 11344554 44789
Q ss_pred CCEEEEEee---CC-ceeecEEEEEEEECCEEEEEEEEeCHHHHHHHhcC
Q 041268 122 GPIVLAEGC---DH-SRQISWVHAWTVADGIITQVREYFNTSLTVTRFGK 167 (217)
Q Consensus 122 Gd~VvveG~---~g-~~~~~~v~vftv~DGkIteireY~Dt~~lv~~lg~ 167 (217)
|+.|+++.. .| .....++++|+|+||||+++++|+|+ ...+++|.
T Consensus 285 g~~v~~~~~~~~~g~~~~~~~v~v~~v~dGkI~~~~~y~d~-~~~~~~~~ 333 (339)
T PRK08241 285 GQPAFAQYMRDPDGGGHRPWALHVLELRGGRIAHVTSFLDT-TLFPRFGL 333 (339)
T ss_pred CCeEEEEEEEcCCCCeeecceEEEEEEeCCEEEEEEEEcCh-hhhhhcCC
Confidence 999999852 22 24566789999999999999999999 56677776
No 6
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=99.56 E-value=1.2e-13 Score=123.12 Aligned_cols=113 Identities=15% Similarity=0.232 Sum_probs=92.1
Q ss_pred CCchHHHHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcCC----CcHHHHHHHHhhh--hhccccCCCceEEEEEEEEEe
Q 041268 48 DSENKNQRVVLALYDALKSRDVETVHKILAPDLEWWFHGP----PTHQFMMHLLTGS--TTASSASQSSFVFVPLSITSF 121 (217)
Q Consensus 48 ~~~~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp----~G~~~~~~~L~g~--~~~~~~~~~~~~f~p~~iia~ 121 (217)
...+.++++|++||+|+++||++.+.+||+||++|+.+.. .|++.+..++.+. ... ...+++.+ ...+
T Consensus 201 ~~~~~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~----~~~~~~~~--~~~~ 274 (324)
T TIGR02960 201 PPSPEEQDLLERYIAAFESYDLDALTALLHEDAIWEMPPYTLWYQGRPAIVGFIHTVCPGEG----AAGMRLLP--TIAN 274 (324)
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHhcCCeEEEcCCCCcceeCHHHHHHHHHHhccccc----CCceeEEE--eeec
Confidence 3556799999999999999999999999999999997742 3888899999887 332 24556654 5588
Q ss_pred CCEEEEEee----CCceeecEEEEEEEECCEEEEEEEEeCHHHHHHHhc
Q 041268 122 GPIVLAEGC----DHSRQISWVHAWTVADGIITQVREYFNTSLTVTRFG 166 (217)
Q Consensus 122 Gd~VvveG~----~g~~~~~~v~vftv~DGkIteireY~Dt~~lv~~lg 166 (217)
|+.+++... ++.....++++|+|+||||++++.|+|+..+..++|
T Consensus 275 g~~~~v~~~~~~~~~~~~~~~v~~~~~~dGkI~~~~~~~~~~~~~~~~~ 323 (324)
T TIGR02960 275 GQPAAAMYMRRPDAERHTAFQLHVLEIRGGRITHVTAFLDGPSLFAAFG 323 (324)
T ss_pred CCceEEEEEEcCCCCeeeeeEEEEEEEcCCcEEEEEEEcCCHHHHhhcC
Confidence 998888742 223467789999999999999999999999988887
No 7
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=99.53 E-value=2.8e-13 Score=104.68 Aligned_cols=106 Identities=18% Similarity=0.304 Sum_probs=86.6
Q ss_pred HHHHHHH-HHhcCCHHHHHhhccCCEEEEEcCC---CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEeCCEEEEE---
Q 041268 56 VVLALYD-ALKSRDVETVHKILAPDLEWWFHGP---PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSFGPIVLAE--- 128 (217)
Q Consensus 56 lV~~fye-A~~~gD~e~l~aLlA~Dvvw~~~Gp---~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd~Vvve--- 128 (217)
+|+++|. +++++|++.+.++++||++++.++. .|.+++..++...... ++++++++.+++++||+|+++
T Consensus 2 ~v~~~~~~~~n~~d~~~~~~~~~~d~~~~~~~~~~~~G~~~~~~~~~~~~~a----fPD~~~~i~~~~~~gd~v~~~~~~ 77 (126)
T PF07366_consen 2 IVRRFYEEVWNRGDLDALDELVAPDVVFHDPGPGPPVGREGFKEFLKELRAA----FPDLRFEIEDVVAEGDRVAVRWTF 77 (126)
T ss_dssp HHHHHHHHHHHTT-GCHHHGTEEEEEEEEGCTTTEEEHHHHHHHHHHHHHHH----STTTEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHhCCCHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHHHHHHH----CCCCEEEEEEEEEECCEEEEEEEE
Confidence 4566665 5799999999999999999987653 3788888888887765 588999999999999999998
Q ss_pred -ee----------CCc-eeecEEEEEEEECCEEEEEEEEeCHHHHHHHh
Q 041268 129 -GC----------DHS-RQISWVHAWTVADGIITQVREYFNTSLTVTRF 165 (217)
Q Consensus 129 -G~----------~g~-~~~~~v~vftv~DGkIteireY~Dt~~lv~~l 165 (217)
|+ .|. .....+.+|+|+||||++.|.|+|...+.+||
T Consensus 78 ~Gth~g~~~g~~ptgk~v~~~~~~~~~~~~gkI~e~~~~~D~~~~~~QL 126 (126)
T PF07366_consen 78 TGTHTGEFMGIPPTGKPVEFRGMSIFRFEDGKIVEEWVYFDELSLLRQL 126 (126)
T ss_dssp EEEESSEBTTBE-TTEEEEEEEEEEEEEETTEEEEEEEEECHHHHHHHT
T ss_pred EEeecCCcCCcCCCCCEEEEEEEEEEEEECCEEEEEEEEECHHHHHhhC
Confidence 32 111 34555679999999999999999999999886
No 8
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=99.50 E-value=5.4e-13 Score=96.69 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=78.0
Q ss_pred HHHHHHHHhcCCHHHHHhhccCCEEEEEcCC--CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEeCCEEEEEee----
Q 041268 57 VLALYDALKSRDVETVHKILAPDLEWWFHGP--PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSFGPIVLAEGC---- 130 (217)
Q Consensus 57 V~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp--~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd~VvveG~---- 130 (217)
|++||+|++++|++.+.++|+||++|+.+++ .|++.+..+++..... ....++++.++.++||.|++++.
T Consensus 1 V~~~~~a~~~~d~~~i~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~gd~v~~~~~~~~~ 76 (102)
T PF12680_consen 1 VRRFFEAWNAGDLDAIAALFAPDAVFHDPGGTLRGREAIREFFEEFFES----FPDIRFEIHDIFADGDRVVVEWTVTGT 76 (102)
T ss_dssp HHHHHHHHHTTHHHHHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHH----EEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CHHHHHHHHcCCHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHhc----CCceEEEEEEEEEcCCEEEEEEEEEEE
Confidence 7899999999999999999999999998864 4899999999888764 36789999999999999999842
Q ss_pred ---CCc-eeecEEEEEEEECCEEEEE
Q 041268 131 ---DHS-RQISWVHAWTVADGIITQV 152 (217)
Q Consensus 131 ---~g~-~~~~~v~vftv~DGkItei 152 (217)
+|. .....+++|+++||||+++
T Consensus 77 ~~~~g~~~~~~~~~~~~~~dgkI~~~ 102 (102)
T PF12680_consen 77 TPPTGQPISFRGCSVFRFEDGKIVEH 102 (102)
T ss_dssp ETTTSCEEEEEEEEEEEEETTEEEEE
T ss_pred EcCCCCEEEEEEEEEEEEECCEEEEC
Confidence 233 3455677999999999985
No 9
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=99.49 E-value=2e-13 Score=104.46 Aligned_cols=107 Identities=13% Similarity=0.087 Sum_probs=83.2
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcC-C---CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEeCCEE
Q 041268 50 ENKNQRVVLALYDALKSRDVETVHKILAPDLEWWFHG-P---PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSFGPIV 125 (217)
Q Consensus 50 ~~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~G-p---~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd~V 125 (217)
.+.+++++++|++|++++|.+.+.+||+||++|..+. + .|++.+.+++...... ...+++........|+.+
T Consensus 2 ~~~~~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~~~----~~~~~~~~~~~~~~g~~~ 77 (122)
T cd00781 2 PQEMKAAVQRYVEAVNAGDPEGIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSLGG----AKRLELTGPVRASHGGEA 77 (122)
T ss_pred cHHHHHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHhcc----CceEEecCceeeecCCEE
Confidence 3568999999999999999999999999999998653 2 4888999999887543 234555555556778877
Q ss_pred EEEe----e-C-CceeecEEEEEEEE-CCEEEEEEEEeCHHH
Q 041268 126 LAEG----C-D-HSRQISWVHAWTVA-DGIITQVREYFNTSL 160 (217)
Q Consensus 126 vveG----~-~-g~~~~~~v~vftv~-DGkIteireY~Dt~~ 160 (217)
+++. . . +.....++++|+|. ||||+++++|||...
T Consensus 78 ~~~~~~~~~~~g~~~~~~~~~v~~~~~dGkI~~~~~y~d~~~ 119 (122)
T cd00781 78 AFAFRVEFEWEGQPCVVRVIDVMRFDADGRIVSMRAYWGPVN 119 (122)
T ss_pred EEEEEEEEEeCCceEEEEEEEEEEECCCccChHHHHhcCccc
Confidence 6663 1 2 23456678899995 799999999999764
No 10
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=99.25 E-value=3.4e-10 Score=100.19 Aligned_cols=110 Identities=18% Similarity=0.146 Sum_probs=85.6
Q ss_pred CCchHHHHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcCC----------CcHHHHHHHHhhhhhccccCCCceEEEEEE
Q 041268 48 DSENKNQRVVLALYDALKSRDVETVHKILAPDLEWWFHGP----------PTHQFMMHLLTGSTTASSASQSSFVFVPLS 117 (217)
Q Consensus 48 ~~~~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp----------~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~ 117 (217)
...+.++++|++|++|+++||++++.+||+||++|+.+|+ .|++.+.++|.+..... ..........
T Consensus 168 ~~~~~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~---~~~~~~~~~~ 244 (293)
T PRK09636 168 VSDEEGAELVEAFFAALASGDLDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLARRY---GPGGSTLVRL 244 (293)
T ss_pred CCchHHHHHHHHHHHHHHhCCHHHHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHhhhc---cCCCceEEEE
Confidence 4556789999999999999999999999999999998763 27889999998886541 1112233344
Q ss_pred EEEeCCEEEEEeeCCceeecEEEEEEEECCEEEEEEEEeCHHHHH
Q 041268 118 ITSFGPIVLAEGCDHSRQISWVHAWTVADGIITQVREYFNTSLTV 162 (217)
Q Consensus 118 iia~Gd~VvveG~~g~~~~~~v~vftv~DGkIteireY~Dt~~lv 162 (217)
+..+|+-.++....+. ...+..++++||+|+++....||.++.
T Consensus 245 ~~vnG~~a~~~~~~~~--~~~~~~~~~~~g~I~~i~~~~~p~kl~ 287 (293)
T PRK09636 245 ALVNGLPGFVTAEADG--EPQTTALEVEDGKIVAIYDVRNPDKLT 287 (293)
T ss_pred EEECCceeEEEEeCCc--eEEEEEEEEECCEEEEEEEEcCHHHhc
Confidence 5677887777754443 255778899999999999999999884
No 11
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.24 E-value=7.6e-11 Score=91.56 Aligned_cols=114 Identities=25% Similarity=0.288 Sum_probs=88.4
Q ss_pred CCchHHHHHHHHHHHHHhcCCHHHHH-hhccCCEEEEEcCC---CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEeCC
Q 041268 48 DSENKNQRVVLALYDALKSRDVETVH-KILAPDLEWWFHGP---PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSFGP 123 (217)
Q Consensus 48 ~~~~~nk~lV~~fyeA~~~gD~e~l~-aLlA~Dvvw~~~Gp---~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd 123 (217)
++..++.++|+.|.+|+.+-|.++.. .+..+|-+|..+|- +|......+|.+.... ...++|++.++.++|.
T Consensus 3 ~~~~~pi~~V~aF~aA~~~~d~~~avr~~~~~d~v~~n~gis~i~G~~~~ia~l~~~~~~----~~~~ef~I~riAadg~ 78 (130)
T COG4308 3 STMPEPIRTVEAFLAALQEDDGDAAVRRLGTPDTVYNNVGISTIHGPAETIALLRPRMAG----ILGFEFKILRIAADGG 78 (130)
T ss_pred CcCCCcHHHHHHHHHHHHhcCccHHHHHhcCCCeeeccCCcccccchhhhhhhhccccCC----cceeEEEEEEEecccc
Confidence 34567999999999999999887665 55558888877762 5778888888853332 3678999999999999
Q ss_pred EEEEEee----CCc-eeecEEE-EEEEECCEEEEEEEEeCHHHHHHHh
Q 041268 124 IVLAEGC----DHS-RQISWVH-AWTVADGIITQVREYFNTSLTVTRF 165 (217)
Q Consensus 124 ~VvveG~----~g~-~~~~~v~-vftv~DGkIteireY~Dt~~lv~~l 165 (217)
.|..|-. .|. ...-||+ +|+|.||||+.||+|||-..+..+.
T Consensus 79 ~VltER~D~~~~g~~~~~~~V~GvfEV~~~rI~~WRDYFDv~~l~k~~ 126 (130)
T COG4308 79 AVLTERLDARIDGPLWVQFWVCGVFEVEDGRIVLWRDYFDVNDLFKQT 126 (130)
T ss_pred eehhhhhhhhccCCcEEEEEEEEEEEEeCCEEEeehhhhhHHHHHhhc
Confidence 9999842 222 2345677 9999999999999999998776653
No 12
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.98 E-value=3.6e-09 Score=81.79 Aligned_cols=103 Identities=16% Similarity=0.220 Sum_probs=82.7
Q ss_pred CchHHHHHHHHHHHH-HhcCCHHHHHhhccCCEEEEEcCC---CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEeCCE
Q 041268 49 SENKNQRVVLALYDA-LKSRDVETVHKILAPDLEWWFHGP---PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSFGPI 124 (217)
Q Consensus 49 ~~~~nk~lV~~fyeA-~~~gD~e~l~aLlA~Dvvw~~~Gp---~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd~ 124 (217)
....|+++|-.||.- |++|.++...+++.+ .|..|.| .|++++.++|+++.... +..+..+.+.+++||.
T Consensus 3 q~~~N~~~v~~~y~~~~~~g~veka~a~~vd--~YiQHnp~vpdGk~~fv~fFt~ffk~~----P~~~~kiVr~iadGdL 76 (129)
T COG4922 3 QLHANKQVVIQFYRTLFEAGEVEKADAYLVD--RYIQHNPMVPDGKDGFVRFFTEFFKEK----PRISTKIVRVIADGDL 76 (129)
T ss_pred hhhhhHHHHHHHHHHHHHCCCHHHhhhhhhh--HHHhcCCCCCCchHHHHHHHHHHHHhC----ccccceeeEEeccCCE
Confidence 456799999999995 889999999999994 4555654 48999999999998752 4456778899999999
Q ss_pred EEEEe-----eCCceeecEEEEEEEECCEEEEEEEEeC
Q 041268 125 VLAEG-----CDHSRQISWVHAWTVADGIITQVREYFN 157 (217)
Q Consensus 125 VvveG-----~~g~~~~~~v~vftv~DGkIteireY~D 157 (217)
|.+.- ..|.....+++.|++.||||++.|+-.+
T Consensus 77 V~vh~hqt~~~pg~~~~v~~DtfR~ddgkivEHWDviq 114 (129)
T COG4922 77 VTVHYHQTVSEPGSYTTVTFDTFRIDDGKIVEHWDVIQ 114 (129)
T ss_pred EEEEEeeeeCCCCcceeEEEEEEEeeCCceeeccchhh
Confidence 99982 2355556678899999999999887544
No 13
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=98.96 E-value=3.1e-08 Score=87.40 Aligned_cols=107 Identities=14% Similarity=0.181 Sum_probs=80.1
Q ss_pred CchHHHHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcCC----------CcHHHHHHHHhhhhhccccCCCceEEEEEEE
Q 041268 49 SENKNQRVVLALYDALKSRDVETVHKILAPDLEWWFHGP----------PTHQFMMHLLTGSTTASSASQSSFVFVPLSI 118 (217)
Q Consensus 49 ~~~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp----------~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~i 118 (217)
.....+++|++|.+|+.+||++++.+||+||++++.+|+ .|.+.+.++|.+..... ...+++.+.
T Consensus 162 ~~~~~~~~~~~f~~a~~~gD~~~l~~lL~~dv~~~~dggg~~~~~~~p~~G~~~v~~~~~~~~~~~---~~~~~~~~~-- 236 (281)
T TIGR02957 162 SREESRQLLERFVEAAQTGDLDGLLELLAEDVVLYGDGGGKVRAALRPIYGADRVARFFFGLVRRL---GPGGRVDPV-- 236 (281)
T ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHhhceEEEecCCCcCCCCCcccccHHHHHHHHHHHhccc---CCCceEEEE--
Confidence 445688999999999999999999999999999998764 28888899988865421 123444443
Q ss_pred EEeCCEEEEEeeCCceeecEEEEEEEECCEEEEEEEEeCHHHHH
Q 041268 119 TSFGPIVLAEGCDHSRQISWVHAWTVADGIITQVREYFNTSLTV 162 (217)
Q Consensus 119 ia~Gd~VvveG~~g~~~~~~v~vftv~DGkIteireY~Dt~~lv 162 (217)
..+|.-.++.-.+|. ...+..|+++||+|+++....||.++.
T Consensus 237 ~vnG~p~~~~~~~~~--~~~~~~~~~~~g~I~~i~~~~nP~kl~ 278 (281)
T TIGR02957 237 DVNGQPAVLVRIDGK--LAYVVTFAIEGGGIQNIYIVRNPEKLA 278 (281)
T ss_pred EECCCceEEEEeCCc--EEEEEEEEEECCEEEEEEEEcCHHHhc
Confidence 455655544423342 345667889999999999999999874
No 14
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=98.87 E-value=2e-08 Score=78.46 Aligned_cols=107 Identities=14% Similarity=0.083 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcCCHHHHHhhccCCEEEEEcCCCcHHHHHHHHhhhhhccccCCCceEEEEEEEEEeCCEEEEEee----
Q 041268 55 RVVLALYDALKSRDVETVHKILAPDLEWWFHGPPTHQFMMHLLTGSTTASSASQSSFVFVPLSITSFGPIVLAEGC---- 130 (217)
Q Consensus 55 ~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd~VvveG~---- 130 (217)
+++++|+++++..+++.+....+.++. ..+.+.|-.++.+++.+.+.. .++++|+.+.++++|+.|++++.
T Consensus 10 ~~y~Ay~d~ln~q~~~~l~~fv~~~v~-~ng~~~glsgyr~ml~~df~a----iPdl~f~ie~lvae~~~vaarl~Fdct 84 (131)
T COG5485 10 DRYRAYLDCLNRQAWDELGSFVDGNVM-HNGRLQGLSGYREMLVRDFSA----IPDLSFEIERLVAEGDRVAARLTFDCT 84 (131)
T ss_pred HHHHHHHHhhhhhhhhhcccCCcCeee-eCCceechHHHHHHHHhhHhh----CCCcceEEEEEeecCCceEEEEEEccC
Confidence 688899999999999998888777764 333356777888888887765 58999999999999999999952
Q ss_pred ----------CCcee-ecEEEEEEEECCEEEEEEEEeCHHHHHHHhc
Q 041268 131 ----------DHSRQ-ISWVHAWTVADGIITQVREYFNTSLTVTRFG 166 (217)
Q Consensus 131 ----------~g~~~-~~~v~vftv~DGkIteireY~Dt~~lv~~lg 166 (217)
+|+.. ..-.++++|.||||+++|..+|...+.+|||
T Consensus 85 p~G~i~Gip~nGkrV~Fse~vfy~f~~~KI~~vwsv~Dk~ai~rQL~ 131 (131)
T COG5485 85 PSGEIMGIPPNGKRVRFSENVFYEFENGKIVEVWSVIDKMAIERQLG 131 (131)
T ss_pred cCceEeccCCCCcEEEeehhhhhhhcCCeEEeeehhccHHHHHHhhC
Confidence 23322 2223478999999999999999999999885
No 15
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=98.63 E-value=6.5e-07 Score=79.73 Aligned_cols=106 Identities=15% Similarity=0.149 Sum_probs=77.5
Q ss_pred CchHHHHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcCC-----CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEeCC
Q 041268 49 SENKNQRVVLALYDALKSRDVETVHKILAPDLEWWFHGP-----PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSFGP 123 (217)
Q Consensus 49 ~~~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp-----~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd 123 (217)
.....+++|++|.+|+.+||++++.+||+||+..-.+.+ .|.+.+.+++.+.... ..+++.+. ...|.
T Consensus 172 ~~~~~~~~~~~f~~a~~~gd~~~l~~ll~~d~~~~~~~~~~~~~~G~~~v~~~~~~~~~~-----~~~~~~~~--~~ng~ 244 (290)
T PRK09635 172 EPAQHRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWSH-----PATVLVAQ--PVCGQ 244 (290)
T ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHhhhhhcCCCcCCCCccccCHHHHHHHHHHhhcc-----CceEEEEe--eeCCC
Confidence 445678999999999999999999999999996322211 3888899999876432 33455544 45565
Q ss_pred EEEEEeeCCceeecEEEEEEEECCEEEEEEEEeCHHHHHH
Q 041268 124 IVLAEGCDHSRQISWVHAWTVADGIITQVREYFNTSLTVT 163 (217)
Q Consensus 124 ~VvveG~~g~~~~~~v~vftv~DGkIteireY~Dt~~lv~ 163 (217)
-.++.-.+|. ...+++|++.||||+.+..+.||.++..
T Consensus 245 p~~~~~~~~~--~~~~~~~~~~~~~I~~i~~~~np~kl~~ 282 (290)
T PRK09635 245 PAVLAFVNRA--LAGVLALSIEAGKITKIHVLVQPSTLDP 282 (290)
T ss_pred ceEEEEeCCc--eEEEEEEEEECCEEEEEEEEcCHHHhhh
Confidence 5544322332 3457789999999999999999998854
No 16
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=98.54 E-value=7.9e-07 Score=71.53 Aligned_cols=115 Identities=16% Similarity=0.195 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHhhccCCEE---EEEcCC-----CcHHHHHHHHhhhhhccccCCCceEEEEEEEEE-
Q 041268 50 ENKNQRVVLALYDALKSRDVETVHKILAPDLE---WWFHGP-----PTHQFMMHLLTGSTTASSASQSSFVFVPLSITS- 120 (217)
Q Consensus 50 ~~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvv---w~~~Gp-----~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia- 120 (217)
.+.|+++|+.|... ...|-=.=..||++|-. |+...+ .|++.+++........ ++++.+.-.++..
T Consensus 17 R~~NR~~Ve~Ym~t-~g~~RL~Rh~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwslkc----FPDWeW~nv~ifeT 91 (162)
T PF03284_consen 17 RRINRATVEQYMNT-KGQDRLRRHELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSLKC----FPDWEWYNVRIFET 91 (162)
T ss_dssp HHHHHHHHHHHHC---GGGGGGGGGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHHHH----STT-EEEEEEEEEB
T ss_pred HHhhHHHHHHHHHc-CchhhhhhheeeccCCccccccCCCCceEEEEhHHHHHHHHHHHHHH----CCCcEEEEEEeecc
Confidence 56799999998873 33333344589999963 544432 3887776665555555 5788887777754
Q ss_pred -eCCEEEEE--ee-----CC----ceeecEEEEEEEECCEEEEEEEEeCHHHHHHHhcCCC
Q 041268 121 -FGPIVLAE--GC-----DH----SRQISWVHAWTVADGIITQVREYFNTSLTVTRFGKDL 169 (217)
Q Consensus 121 -~Gd~Vvve--G~-----~g----~~~~~~v~vftv~DGkIteireY~Dt~~lv~~lg~~~ 169 (217)
+++.+.|| |. .| -....++|.|+++||||++.|||+|+..-.++||-.+
T Consensus 92 ~DP~~fwVEcdG~G~i~fpGypeg~y~NHfiHsFel~nGkI~~~REFmNp~qq~RaLgi~v 152 (162)
T PF03284_consen 92 QDPNHFWVECDGRGKILFPGYPEGYYENHFIHSFELENGKIKRNREFMNPFQQLRALGIPV 152 (162)
T ss_dssp SSTTEEEEEEEEEEEE--TTS--EEEEEEEEEEEEEETTEEEEEEEEE-HHHHHHHTT---
T ss_pred cCCCEEEEEecCccceecCCCCcccceeeeEEEEEeeCCEEEeehhhcCHHHHHHHcCCCC
Confidence 46789998 32 22 2356678999999999999999999999999999754
No 17
>COG4538 Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=1.7e-05 Score=59.88 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHhhccCCEEEE-EcCC---CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEeCCEEEEE
Q 041268 53 NQRVVLALYDALKSRDVETVHKILAPDLEWW-FHGP---PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSFGPIVLAE 128 (217)
Q Consensus 53 nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~-~~Gp---~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd~Vvve 128 (217)
...+|++-.+|.+++|.++.+..|++|+++. +++. .|.+.++.+....+.- +....+...-+.-|+.|+=+
T Consensus 5 ~ed~vq~Ql~AYNa~Dvdaf~a~f~DD~vv~~f~a~~~~gg~aaira~y~e~FaE-----p~~~~~ll~Rv~vGs~ViDH 79 (112)
T COG4538 5 PEDVVQRQLAAYNAGDVDAFAAEFDDDAVVTTFDALDGDGGTAAIRAAYGEQFAE-----PAPEISLLDRVSVGSYVIDH 79 (112)
T ss_pred hhHHHHHHHHhhccccHHHHHhhcccceEEEecccccccCcHHHHHHHHHHHhcC-----CCccceeeeeEEeccEEecc
Confidence 5678999999999999999999999999875 5553 3555666665555442 34456666666778777765
Q ss_pred e---e-CCceeecEEEEEEEECCEEEEEEE
Q 041268 129 G---C-DHSRQISWVHAWTVADGIITQVRE 154 (217)
Q Consensus 129 G---~-~g~~~~~~v~vftv~DGkIteire 154 (217)
- + +|+......|+|||.+|||.++|-
T Consensus 80 Ehvtr~~g~ge~dvaciYtv~~g~Iar~wf 109 (112)
T COG4538 80 EHVTRGTGGGERDVACIYTVVEGLIARLWF 109 (112)
T ss_pred eeeccCCCCCceeEEEEEEEeCCeeeeeee
Confidence 2 1 233356678899999999999874
No 18
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=98.29 E-value=1.7e-05 Score=57.78 Aligned_cols=91 Identities=16% Similarity=0.271 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcCC--CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEeCCEEEEEee-
Q 041268 54 QRVVLALYDALKSRDVETVHKILAPDLEWWFHGP--PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSFGPIVLAEGC- 130 (217)
Q Consensus 54 k~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp--~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd~VvveG~- 130 (217)
+++.++|.+|++++|.+.+.++++||+++..++. .+++.+.+.+...... ...++++...+...||.+++.|.
T Consensus 2 ~a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~~~~~~~----~~~~~~~~~~v~~~gd~a~~~~~~ 77 (107)
T PF14534_consen 2 RALEEQYEDAFNAGDIDALASLYADDFVFVGPGGTILGKEAILAAFKSGFAR----FSSIKFEDVEVRVLGDTAVVRGRW 77 (107)
T ss_dssp HHHHHHHHHHHHTTHHHHHHTTEEEEEEEEETTSEEEEHHHHHHHHHHHCEE----EEEEEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHhhhCCCEEEECCCCCEeCHHHHHHHHhhccCC----CceEEEEEEEEEEECCEEEEEEEE
Confidence 4688999999999999999999999999987764 2666666666543221 24567777788888999888862
Q ss_pred ------CCc---eeecEEEEEEEECCE
Q 041268 131 ------DHS---RQISWVHAWTVADGI 148 (217)
Q Consensus 131 ------~g~---~~~~~v~vftv~DGk 148 (217)
+|. .......+|+-+||+
T Consensus 78 ~~~~~~~g~~~~~~~~~~~v~~k~~g~ 104 (107)
T PF14534_consen 78 TFTWRGDGEPVTIRGRFTSVWKKQDGK 104 (107)
T ss_dssp EEEETTTTEEEEEEEEEEEEEEEETTE
T ss_pred EEEEecCCceEEEEEEEEEEEEEeCCE
Confidence 221 233345578777875
No 19
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=98.12 E-value=0.00011 Score=55.08 Aligned_cols=98 Identities=13% Similarity=0.266 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcCC----CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEeCCEEEEEe
Q 041268 54 QRVVLALYDALKSRDVETVHKILAPDLEWWFHGP----PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSFGPIVLAEG 129 (217)
Q Consensus 54 k~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp----~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd~VvveG 129 (217)
++++++|++|++++|.+.+.++++||+++...++ .|.+.+.+++....... ..-.+.+....+...++.+++.+
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~a~~~~ 79 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESF--RPISIEFEDVQVSVSGDVAVVTG 79 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTH--SEEEEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhC--ceEEEEEEEEEEEECCCEEEEEE
Confidence 4689999999999999999999999999987665 37888888887754431 11233444456667788888874
Q ss_pred e-------CCce---eecEEEEEEEECC--EEEEEE
Q 041268 130 C-------DHSR---QISWVHAWTVADG--IITQVR 153 (217)
Q Consensus 130 ~-------~g~~---~~~~v~vftv~DG--kIteir 153 (217)
. ++.. ......+|+-+|| ||+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~r~t~v~~k~~~~Wki~h~H 115 (121)
T PF13474_consen 80 EFRLRFRNDGEEIEMRGRATFVFRKEDGGWKIVHIH 115 (121)
T ss_dssp EEEEEEECTTCEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEecCCccceeeEEEEEEEEEECCEEEEEEEE
Confidence 2 2221 1223347777777 666554
No 20
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=98.10 E-value=0.00012 Score=55.49 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=57.2
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHhhccCCEEEE-EcCC--CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEeC-CEE
Q 041268 50 ENKNQRVVLALYDALKSRDVETVHKILAPDLEWW-FHGP--PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSFG-PIV 125 (217)
Q Consensus 50 ~~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~-~~Gp--~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~G-d~V 125 (217)
++.-++++.+|++|++++|++.+.++|++|++|. ..|. .|++.+.+++....... .....++++...+...| +.+
T Consensus 3 ~~~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~A 81 (128)
T TIGR02246 3 ERAIRALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGP-YKGTRVTIDVIEVRFLGPDLA 81 (128)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhccc-CCCcEEEeeeEEEEecCCCEE
Confidence 4567899999999999999999999999999997 4554 48888888887654321 00112566666666556 566
Q ss_pred EEEe
Q 041268 126 LAEG 129 (217)
Q Consensus 126 vveG 129 (217)
++.+
T Consensus 82 ~~~~ 85 (128)
T TIGR02246 82 IVHA 85 (128)
T ss_pred EEEE
Confidence 6554
No 21
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=97.65 E-value=0.0028 Score=46.18 Aligned_cols=101 Identities=10% Similarity=0.030 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcCC-------CcHHHHHHHHhhhhhccccCCCceEE-EEEEEEEeCC-E
Q 041268 54 QRVVLALYDALKSRDVETVHKILAPDLEWWFHGP-------PTHQFMMHLLTGSTTASSASQSSFVF-VPLSITSFGP-I 124 (217)
Q Consensus 54 k~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp-------~G~~~~~~~L~g~~~~~~~~~~~~~f-~p~~iia~Gd-~ 124 (217)
++++.+|+.++.++|.+.+..++++|+.|..+++ .|++.+..++...... .....++ ....+...++ .
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~---~~~~~h~~~~~~~~~~~~~~ 78 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFG---PSRTRHLVSNVDVQPGDDGE 78 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCC---CCceEEEEEeEEEEeCCCCE
Confidence 5789999999999999999999999999988773 3777888888776431 0122233 3344444443 2
Q ss_pred EE---EEe----eC-Cc-eeecEEEEEEEE----CCEEEEEEEEeC
Q 041268 125 VL---AEG----CD-HS-RQISWVHAWTVA----DGIITQVREYFN 157 (217)
Q Consensus 125 Vv---veG----~~-g~-~~~~~v~vftv~----DGkIteireY~D 157 (217)
+. +.+ .. +. ........+++. ++||++.+.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~i~~~~~~~~ 124 (124)
T cd00531 79 GVVVSVFGVLRTRGDGEQDVFAGGQTFVLRPQGGGGKIANRRFRLD 124 (124)
T ss_pred EEEEEEEEEEEEccCCceeEEEEEEEEEEEEeCCEEEEEEEEEecC
Confidence 11 112 12 11 122223355554 689999888775
No 22
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=97.64 E-value=0.00047 Score=55.24 Aligned_cols=78 Identities=12% Similarity=0.193 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHhhccCCEEEEEc-CC--CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEeCCEEEE
Q 041268 51 NKNQRVVLALYDALKSRDVETVHKILAPDLEWWFH-GP--PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSFGPIVLA 127 (217)
Q Consensus 51 ~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~-Gp--~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd~Vvv 127 (217)
..-++++..+-+|++++|.++++++++||++|--+ |+ .|++.+.+.|++..... .....++++-.++.+.||.+++
T Consensus 10 ~~I~a~i~dw~~Av~a~D~~av~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~~~~~-~~~~~f~~~el~v~~~GD~a~~ 88 (137)
T COG4319 10 DAIRAAIADWAAAVRAKDADAVADFYTDDAVVFPPPGLQRKGKAAIRKAFEGIFAMG-IGPLKFTLEELQVHESGDVAFV 88 (137)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcCCceEEecCCCCcccCHHHHHHHHHHHHHhc-cCCCcceeeeeeeeccCCEEEE
Confidence 45566777777799999999999999999987644 33 48999999999887653 1123344444556699999999
Q ss_pred Ee
Q 041268 128 EG 129 (217)
Q Consensus 128 eG 129 (217)
.+
T Consensus 89 ~~ 90 (137)
T COG4319 89 TA 90 (137)
T ss_pred EE
Confidence 85
No 23
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=96.94 E-value=0.019 Score=43.79 Aligned_cols=77 Identities=16% Similarity=0.098 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcCCC-----cHHHHHHHHhhhhhccccCCCceEEEEEEEEEeCCEE
Q 041268 51 NKNQRVVLALYDALKSRDVETVHKILAPDLEWWFHGPP-----THQFMMHLLTGSTTASSASQSSFVFVPLSITSFGPIV 125 (217)
Q Consensus 51 ~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp~-----G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd~V 125 (217)
..=+++|..|++++..||.+.+.++|+||+.+...... ..+.+..++.....-. ........++..|...|+..
T Consensus 4 ~~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~i~~i~i~g~~A 82 (116)
T PF12893_consen 4 AAIEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPK-PPGQERKESILSIDIDGDVA 82 (116)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H--SSTT-EEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhcccc-CCCCCceeEEEEEEEECCEE
Confidence 44578999999999999999999999999976544321 3445666665532000 11345677778888889988
Q ss_pred EEE
Q 041268 126 LAE 128 (217)
Q Consensus 126 vve 128 (217)
.|.
T Consensus 83 ~a~ 85 (116)
T PF12893_consen 83 SAK 85 (116)
T ss_dssp EEE
T ss_pred EEE
Confidence 887
No 24
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=96.57 E-value=0.11 Score=38.86 Aligned_cols=76 Identities=12% Similarity=0.075 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcCC-----CcHHHHHHHHhhhhhccccCCCceE-EEEEEEEEeCC
Q 041268 50 ENKNQRVVLALYDALKSRDVETVHKILAPDLEWWFHGP-----PTHQFMMHLLTGSTTASSASQSSFV-FVPLSITSFGP 123 (217)
Q Consensus 50 ~~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp-----~G~~~~~~~L~g~~~~~~~~~~~~~-f~p~~iia~Gd 123 (217)
+..=++++.+|..++..+|++.+.++|++|++|.+.+. .|.+.+.+++....... ....+ .....|..+||
T Consensus 6 ~~~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~---~~~~H~~~~~~v~~dgd 82 (127)
T PF13577_consen 6 RAAIRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFDGF---AATRHMVTNPVVDVDGD 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHHHE---EEEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcccc---cceeEEccceEEEEcCC
Confidence 44567788899999999999999999999999998863 37888888887764321 11111 12233445788
Q ss_pred EEEEE
Q 041268 124 IVLAE 128 (217)
Q Consensus 124 ~Vvve 128 (217)
.+.+.
T Consensus 83 ~A~~~ 87 (127)
T PF13577_consen 83 TATVR 87 (127)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76665
No 25
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=96.56 E-value=0.084 Score=42.30 Aligned_cols=107 Identities=17% Similarity=0.155 Sum_probs=75.8
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcCC--CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEeCCEEEE
Q 041268 50 ENKNQRVVLALYDALKSRDVETVHKILAPDLEWWFHGP--PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSFGPIVLA 127 (217)
Q Consensus 50 ~~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp--~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd~Vvv 127 (217)
.++..+-|+..=+|++.+|++.+.--+++|.+|..-.. .|++.+..||+..... --++++.-.-..-.|++++|
T Consensus 9 ~etA~~KVr~AEdaWNsrdP~~ValaYT~Ds~WRNR~eF~~GR~~I~~FLtrKW~r----E~~YrLiKELwaf~~nRIAV 84 (143)
T PF07080_consen 9 RETAIQKVRAAEDAWNSRDPEKVALAYTPDSVWRNRDEFLTGREEIVAFLTRKWER----ELDYRLIKELWAFTDNRIAV 84 (143)
T ss_dssp HHHHHHHHHHHHHHHTTT-HHHHHTTEEEEEEEEETTEEE-SHHHHHHHHHHHHHH----SEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhccccCChhHheeccCCCCcccCcccccCcHHHHHHHHHHHHHH----hhhhhhHHhhhhccCCeEEE
Confidence 45677888988999999999999999999999985543 5899999999987654 13445444444555889999
Q ss_pred Ee----e--CCc-eeecEEEEEEE-ECCEEEEEEEEeCHHH
Q 041268 128 EG----C--DHS-RQISWVHAWTV-ADGIITQVREYFNTSL 160 (217)
Q Consensus 128 eG----~--~g~-~~~~~v~vftv-~DGkIteireY~Dt~~ 160 (217)
+= . .|. ...+.---|+| .+|++.+-..-.|...
T Consensus 85 RF~YE~~d~~gqW~RsyGnEnWeFd~~GlM~~R~aSiND~~ 125 (143)
T PF07080_consen 85 RFAYEWHDDSGQWFRSYGNENWEFDEDGLMRRRHASINDVP 125 (143)
T ss_dssp EEEEEEE-TTS-EEEEEEEEEEEE-TTS-EEEEEEEEEEEE
T ss_pred EEeEEEEcCCCCEEecccccccccCCCccHHHhhcccCCcc
Confidence 81 1 232 34445558999 6699888777666543
No 26
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=95.26 E-value=1 Score=35.68 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcC--C---CcHHHHHHHHhhhhhccccCCCce--EEEEEEEEEeCC-E
Q 041268 53 NQRVVLALYDALKSRDVETVHKILAPDLEWWFHG--P---PTHQFMMHLLTGSTTASSASQSSF--VFVPLSITSFGP-I 124 (217)
Q Consensus 53 nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~G--p---~G~~~~~~~L~g~~~~~~~~~~~~--~f~p~~iia~Gd-~ 124 (217)
=.++.+++.+|+..||++++.++++||+..-.+- + .|.+....+|....... .... ++.-.+|.--|+ .
T Consensus 5 I~~l~~~w~~ai~tgD~~~~~~ly~~d~av~~Pt~s~~~~~g~~~~~~YF~~~l~~~---~~~~~~tI~~p~V~~lg~~~ 81 (128)
T PF08332_consen 5 IAALFDRWNDAIQTGDPETYAKLYAPDVAVFEPTVSNQLREGLEFHKFYFDHFLAKK---PQGVNTTILNPHVRLLGDNA 81 (128)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHEEEEEEEEEGGGTTSEEESCHHHHHHHHHTGTTT---SSCEEEEEEEEEEEEESTTE
T ss_pred HHHHHHHHHHHHHcCCHHHHhhhcCCCeeEeccccCCceecChHHHHHHHhcccccC---CCceeeEecCCeEEEcCCCE
Confidence 4567888999999999999999999995432221 2 25566666666443321 1222 233344444454 6
Q ss_pred EEEEee--------CCc---eeecEEEEEEEECC--EEEEEE
Q 041268 125 VLAEGC--------DHS---RQISWVHAWTVADG--IITQVR 153 (217)
Q Consensus 125 VvveG~--------~g~---~~~~~v~vftv~DG--kIteir 153 (217)
+++.|. +|. .....-.+|.-.|| ||+++.
T Consensus 82 Ai~~gvy~f~~~d~~G~~~~~~areT~v~~~~~g~W~ivhhH 123 (128)
T PF08332_consen 82 AIDAGVYTFQFVDKDGVPRTVQARETRVWQKRDGKWKIVHHH 123 (128)
T ss_dssp EEEEEEEEEEEESTTSSEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEeeEEEEEeecCCCCeeeEEEeEEEEEEEeCCeEEEEEEe
Confidence 666552 232 23344558888898 576654
No 27
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=92.87 E-value=3 Score=31.06 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHhhccCCEEE-EEcCC---CcHHHHHHHHhhhhhc
Q 041268 54 QRVVLALYDALKSRDVETVHKILAPDLEW-WFHGP---PTHQFMMHLLTGSTTA 103 (217)
Q Consensus 54 k~lV~~fyeA~~~gD~e~l~aLlA~Dvvw-~~~Gp---~G~~~~~~~L~g~~~~ 103 (217)
...|+.||++++++|.+.|.+++++|... +..|. .|++.+.+++......
T Consensus 3 ~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~~ 56 (118)
T PF02136_consen 3 NSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPAT 56 (118)
T ss_dssp HHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCCc
Confidence 46899999999999999999999777654 44554 3889999999888543
No 28
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=92.50 E-value=0.15 Score=37.37 Aligned_cols=33 Identities=33% Similarity=0.487 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHHHHhcCCHHHHHhhccCCEE
Q 041268 49 SENKNQRVVLALYDALKSRDVETVHKILAPDLE 81 (217)
Q Consensus 49 ~~~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvv 81 (217)
...++.++|+.||.|+.+||++.+.+++.++..
T Consensus 5 ~~~~P~~~v~~f~~al~~gd~~~a~~~~~~~~~ 37 (111)
T PF12870_consen 5 SSSTPEEVVKNFFDALKNGDYEKAYAYLSPESR 37 (111)
T ss_dssp ----HHHHHHHHHHHHCTT-HHHHHHTB--TT-
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHhhCcccc
Confidence 456688999999999999999999999999864
No 29
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=91.17 E-value=3.2 Score=31.45 Aligned_cols=85 Identities=14% Similarity=0.215 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcC-C--CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEe----CC-E
Q 041268 53 NQRVVLALYDALKSRDVETVHKILAPDLEWWFHG-P--PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSF----GP-I 124 (217)
Q Consensus 53 nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~G-p--~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~----Gd-~ 124 (217)
-.+.|+.||..+. .|.+.|..+++++..+.+.| . .|.+.+...+..... ...++++..+.+. +. .
T Consensus 6 ~~~Fv~~YY~~l~-~~~~~L~~fY~~~s~~~~~~~~~~~g~~~I~~~l~~lp~------~~~~~~i~~~d~q~~~~~~il 78 (119)
T cd00780 6 AKAFVQQYYSIFD-NNREGLHRLYGDTSMLSREGMKQVTGRDAIVEKLSSLPF------QKTKHKITTVDSQPTPSGGVI 78 (119)
T ss_pred HHHHHHHHHHHHh-cCHHHHHhhcCCCcEEEECCceEecCHHHHHHHHHhCCC------cceEEEEEEEeeeEcCCCCEE
Confidence 4568999999999 88999999999999988888 3 488888888877641 1234444444322 22 4
Q ss_pred EEEEee---CCceeecEEEEEEE
Q 041268 125 VLAEGC---DHSRQISWVHAWTV 144 (217)
Q Consensus 125 VvveG~---~g~~~~~~v~vftv 144 (217)
|.|.|. ++.....+.+.|.+
T Consensus 79 i~V~G~~~~~~~~~~~F~q~F~L 101 (119)
T cd00780 79 VMVTGSLKLDEQPPRKFSQTFVL 101 (119)
T ss_pred EEEEEEEEECCCCceeEeEEEEE
Confidence 445572 33333455665555
No 30
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=88.89 E-value=7.7 Score=30.98 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=34.9
Q ss_pred CchHHHHHHHHHHHHHhcCCHHHHHhhccCCEEEE-EcC--CC-cHHHHHHHHhhh
Q 041268 49 SENKNQRVVLALYDALKSRDVETVHKILAPDLEWW-FHG--PP-THQFMMHLLTGS 100 (217)
Q Consensus 49 ~~~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~-~~G--p~-G~~~~~~~L~g~ 100 (217)
++.+-.++.+++-+++..||++.+.+.+++|.+.. ... ++ .+.++.+++.+.
T Consensus 35 t~~~vAaLFdrWN~~L~TGdP~kV~anyApDaVLLPT~Sn~vR~s~~ei~DYF~~F 90 (156)
T COG4875 35 TEREVAALFDRWNAALTTGDPNKVAANYAPDAVLLPTMSNQVRSSRSEILDYFSHF 90 (156)
T ss_pred cHHHHHHHHHHHHhhhhcCChHHHHhhcCCceEeecccccccccCHHHHHHHHHHH
Confidence 34445566777777888999999999999998864 222 12 334555555554
No 31
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=88.25 E-value=9.6 Score=29.01 Aligned_cols=81 Identities=17% Similarity=0.054 Sum_probs=51.6
Q ss_pred cCCHHHHHhhccCCEEEEEcCC--CcHHHHHHH---HhhhhhccccCCCceEEEEEEEEEeCC-EEEEEe----e-----
Q 041268 66 SRDVETVHKILAPDLEWWFHGP--PTHQFMMHL---LTGSTTASSASQSSFVFVPLSITSFGP-IVLAEG----C----- 130 (217)
Q Consensus 66 ~gD~e~l~aLlA~Dvvw~~~Gp--~G~~~~~~~---L~g~~~~~~~~~~~~~f~p~~iia~Gd-~VvveG----~----- 130 (217)
.|+.+ .+++++||++..+-. .|.+...+. +...... .....++++.++...++ .|.++. .
T Consensus 16 ~~~~~--~~iY~~dv~F~Dp~~~f~g~~~Y~~~~~~l~~l~~~---~~~~~~~~v~~i~~~~~~~I~~rW~~~g~~~l~w 90 (113)
T PF10184_consen 16 TGDLD--YSIYDEDVVFIDPIVSFKGLDRYKRNLWALRFLGRL---FFSDPSLEVLSIEQDGEDTIRARWRLRGVPRLPW 90 (113)
T ss_pred cCCCC--hhhcCCCeEEECCCCceecHHHHHHHHHHHHHHHhh---ccCCcEEEEEEEEECCCCEEEEEEEEEEEeCCCc
Confidence 45544 469999999874432 366665555 3333221 24567899999999887 777763 1
Q ss_pred CCceeecEEEEEEE-ECCEEEE
Q 041268 131 DHSRQISWVHAWTV-ADGIITQ 151 (217)
Q Consensus 131 ~g~~~~~~v~vftv-~DGkIte 151 (217)
...........|++ .||+|.+
T Consensus 91 ~p~~~~~G~S~~~ln~~g~I~~ 112 (113)
T PF10184_consen 91 RPRISFDGTSTYTLNSDGLIYR 112 (113)
T ss_pred CCcEEEEEEEEEEECCCCcEEe
Confidence 11223444558888 7899986
No 32
>PRK10069 3-phenylpropionate dioxygenase subunit beta; Provisional
Probab=87.66 E-value=15 Score=30.40 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCHHHHHhhccCCEEEEEc
Q 041268 55 RVVLALYDALKSRDVETVHKILAPDLEWWFH 85 (217)
Q Consensus 55 ~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~ 85 (217)
+++-++-.++.++|++.+.+||++|+.|+.|
T Consensus 24 ~~l~~eA~lLD~~d~~~Wl~lft~D~~Y~~P 54 (183)
T PRK10069 24 QFLYREARLLDEWRYDDWLALLAEDIHYTMP 54 (183)
T ss_pred HHHHHHHHHhchhhHHHHHHhhccccEEEcc
Confidence 3444444458999999999999999998864
No 33
>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function.; PDB: 2OWP_A 2RCD_B.
Probab=86.12 E-value=4.2 Score=32.21 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHhhccCCEE-EEEcCC---CcHHHHHHHHhhhhhccccCCCceEEEEEEEEEeCCEE
Q 041268 53 NQRVVLALYDALKSRDVETVHKILAPDLE-WWFHGP---PTHQFMMHLLTGSTTASSASQSSFVFVPLSITSFGPIV 125 (217)
Q Consensus 53 nk~lV~~fyeA~~~gD~e~l~aLlA~Dvv-w~~~Gp---~G~~~~~~~L~g~~~~~~~~~~~~~f~p~~iia~Gd~V 125 (217)
-.+...+|.+||.++|.+.|.+||.+|-. ..+-.. .|++.+.+|-...... ...-++.-..|...|+.+
T Consensus 12 v~aaf~~YE~AL~~nDv~~Ld~lFw~~p~TvRyg~~E~LyG~~aI~aFR~~R~~~----~~~R~l~~~~itt~G~d~ 84 (125)
T PF11533_consen 12 VTAAFDRYERALMANDVDALDALFWDDPRTVRYGAGENLYGHDAIRAFRAARPGG----GPARTLERTVITTFGRDF 84 (125)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHCB--STT-EEEETTEEEESHHHHHHHHHHS--T----TTT-EEEEEEEEEETTTE
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHhccCCceEEECCCccccCHHHHHHHHhcCCCC----CCCcEEEEEEEEEecCce
Confidence 45677888899999999999999998842 233322 3888888877766433 234466667788888633
No 34
>cd00667 ring_hydroxylating_dioxygenases_beta Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.
Probab=84.18 E-value=1.3 Score=35.24 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcC
Q 041268 54 QRVVLALYDALKSRDVETVHKILAPDLEWWFHG 86 (217)
Q Consensus 54 k~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~G 86 (217)
.+++-++-.++..+|++.+.+||++|++|+.+.
T Consensus 7 ~~ll~~ya~~LD~~~~~~w~~lft~D~~y~~~~ 39 (160)
T cd00667 7 EQFLYREARLLDDRRWDEWLALFAEDCHYWVPA 39 (160)
T ss_pred HHHHHHHHHHhcccCHHHHHHhhccccEEEcce
Confidence 356666667799999999999999999998654
No 35
>TIGR03231 anthran_1_2_B anthranilate 1,2-dioxygenase, small subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the small subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase small subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=78.96 E-value=2.8 Score=34.01 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCHHHHHhhccCCEEEEEcC
Q 041268 56 VVLALYDALKSRDVETVHKILAPDLEWWFHG 86 (217)
Q Consensus 56 lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~G 86 (217)
++-++-..+.+++++.+.++|++|+.||.|.
T Consensus 4 ~l~~ea~llD~~~~~~W~~lf~~d~~Y~vP~ 34 (155)
T TIGR03231 4 FLYRKAELCDAQDWDAYLDLFDEDSEFHLPQ 34 (155)
T ss_pred HHHHHHHHhcccCHHHHHHHhCcCceEEeec
Confidence 3444445689999999999999999999965
No 36
>TIGR03232 benzo_1_2_benB benzoate 1,2-dioxygenase, small subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family should all act on benzoate, but several have additional known activities on various benozate analogs. Some members actually may be named more suitably according to such alternate an activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=75.59 E-value=2.7 Score=34.18 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=21.8
Q ss_pred HhcCCHHHHHhhccCCEEEEEcC
Q 041268 64 LKSRDVETVHKILAPDLEWWFHG 86 (217)
Q Consensus 64 ~~~gD~e~l~aLlA~Dvvw~~~G 86 (217)
+.+++++.+.+||++|+.||+|.
T Consensus 12 LD~~~~~eWl~L~~eD~~Y~vP~ 34 (155)
T TIGR03232 12 LDDEQWDDWLECYRADASFWMPA 34 (155)
T ss_pred hhhhhHHHHHHhcccCeEEEEEe
Confidence 89999999999999999999876
No 37
>PF05223 MecA_N: NTF2-like N-terminal transpeptidase domain; InterPro: IPR007887 The multiple antibiotic resistance of methicillin-resistant strains of Staphylococcus aureus (MRSA) has become a major clinical problem worldwide. Methicillin resistance in MRSA strains is due to the acquisition of the mecA gene via horizontal transfer from an unidentified species which encodes penicillin-binding protein 2a (PBP2a). The structure of the N-terminal domain from MecA is known [] Q53707 from SWISSPROT and is found to be similar to that found in NTF2 IPR002075 from INTERPRO. The length of the PBP2A N-terminal domain (which positions the transpeptidase active site more than 100A from the expected C terminus of the transmembrane anchor) suggests a possible structural role and potentially gives the transpeptidase domain substantial reach from the cell membrane. This domain seems unlikely to have an enzymatic function.; GO: 0046677 response to antibiotic; PDB: 1MWS_B 1MWT_B 1MWR_A 1MWU_A 1VQQ_A.
Probab=75.44 E-value=2.3 Score=32.59 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHhhccCCE
Q 041268 52 KNQRVVLALYDALKSRDVETVHKILAPDL 80 (217)
Q Consensus 52 ~nk~lV~~fyeA~~~gD~e~l~aLlA~Dv 80 (217)
+.++.+++|++||++||++.+.++++.+.
T Consensus 2 ~p~~~~~~f~~aw~~~dy~~m~~~~~~~~ 30 (118)
T PF05223_consen 2 SPEETAEAFLEAWEKGDYAAMYELTSDPS 30 (118)
T ss_dssp ---HHHHHHHHHHHTT-HHHHHHTB-HHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHhhchhh
Confidence 46789999999999999999999998874
No 38
>PF00866 Ring_hydroxyl_B: Ring hydroxylating beta subunit; InterPro: IPR000391 The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonhaem iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centres to a terminal dioxygenase []. Aromatic-ring-hydroxylating dioxygenases oxidise aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilise a mononuclear non-haem iron centre to catalyse the addition of dioxygen to their respective substrates. Naphthalene 1,2-dioxygenase (NDO) from Pseudomonas sp. NCIB9816-4 has a domain structure and iron coordination of the Rieske domain is very similar to that of the cytochrome bc1 domain. The active-site iron centre of one of the alpha subunits is directly connected by hydrogen bonds through a single amino acid, Asp205, to the Rieske [2Fe-2S] centre in a neighbouring alpha subunit. This may be the main route for electron transfer [].; GO: 0003824 catalytic activity, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 1ULJ_B 1ULI_D 1WQL_B 2GBX_D 2GBW_B 2XSH_D 2XR8_X 2XRX_V 2YFL_B 2YFJ_J ....
Probab=64.99 E-value=5.5 Score=31.70 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=21.0
Q ss_pred HHhcCCHHHHHhhccCCEEEEEcC
Q 041268 63 ALKSRDVETVHKILAPDLEWWFHG 86 (217)
Q Consensus 63 A~~~gD~e~l~aLlA~Dvvw~~~G 86 (217)
.+..++++.+.+||++|+.||++.
T Consensus 5 lLD~~~~~eWl~l~~~D~~Y~vp~ 28 (145)
T PF00866_consen 5 LLDERRYDEWLALFTEDCHYWVPA 28 (145)
T ss_dssp HHHTT-HHHHHHTEEEEEEEEEEE
T ss_pred HhhhhHHHHHHHHhccCeEEEEEe
Confidence 488999999999999999999876
No 39
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=59.92 E-value=32 Score=30.76 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcCC-CcHHHHHHHHhhhhh
Q 041268 51 NKNQRVVLALYDALKSRDVETVHKILAPDLEWWFHGP-PTHQFMMHLLTGSTT 102 (217)
Q Consensus 51 ~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp-~G~~~~~~~L~g~~~ 102 (217)
.++.+.+.+|-+|+.++|.++|.++|.+|..=..++. -..+...+|+.....
T Consensus 5 ~tPe~Aa~Al~~Av~~~d~~aL~~vLG~~~~~~vp~~~~d~~~~~~Fl~~w~~ 57 (271)
T PF11453_consen 5 PTPEAAADALVDAVATNDEDALAKVLGPDWRDLVPSGGADREDRYRFLRAWAE 57 (271)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHhCccHHhccCCCCccHHHHHHHHHHHHh
Confidence 4577889999999999999999999999975444432 246788888887754
No 40
>COG5517 Small subunit of phenylpropionate dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.25 E-value=13 Score=30.69 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=22.2
Q ss_pred HHhcCCHHHHHhhccCCEEEEEcC
Q 041268 63 ALKSRDVETVHKILAPDLEWWFHG 86 (217)
Q Consensus 63 A~~~gD~e~l~aLlA~Dvvw~~~G 86 (217)
++.++|+++..++|.+++.||++.
T Consensus 20 llDd~dwd~Wla~f~e~~~y~m~~ 43 (164)
T COG5517 20 LLDDRDWDAWLAQFDEQAEYWMPP 43 (164)
T ss_pred HhccccHHHHHHHHHhhheEeCCc
Confidence 389999999999999999999876
No 41
>PF11006 DUF2845: Protein of unknown function (DUF2845); InterPro: IPR021268 This bacterial family of proteins has no known function.
Probab=42.67 E-value=33 Score=24.95 Aligned_cols=19 Identities=11% Similarity=0.349 Sum_probs=15.5
Q ss_pred ecEEEEEEEECCEEEEEEE
Q 041268 136 ISWVHAWTVADGIITQVRE 154 (217)
Q Consensus 136 ~~~v~vftv~DGkIteire 154 (217)
..++.+++|+|||+++++.
T Consensus 67 ~~~~~~l~f~~Gkl~~I~~ 85 (87)
T PF11006_consen 67 NGFMQILTFENGKLVRIES 85 (87)
T ss_pred CCcEEEEEEECCEEEEEEe
Confidence 3456789999999999874
No 42
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.38 E-value=9.2 Score=34.29 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHhhccCCE
Q 041268 51 NKNQRVVLALYDALKSRDVETVHKILAPDL 80 (217)
Q Consensus 51 ~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dv 80 (217)
+.-++..+..-+|+..+|.+++..|+++++
T Consensus 154 ~~a~~a~~~Iq~a~~~~D~~tL~~L~tpev 183 (281)
T COG4395 154 NGARAAYEMIQQAYGAGDRKTLRELLTPEV 183 (281)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHhcCHHH
Confidence 345556666666788999999999999986
No 43
>COG4460 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.98 E-value=1.3e+02 Score=23.65 Aligned_cols=58 Identities=9% Similarity=0.103 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCHHHHHhhccCCEEEEEcCCC--cHHHHHHHHhhhhhccccCCCceEEEEEEE
Q 041268 57 VLALYDALKSRDVETVHKILAPDLEWWFHGPP--THQFMMHLLTGSTTASSASQSSFVFVPLSI 118 (217)
Q Consensus 57 V~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp~--G~~~~~~~L~g~~~~~~~~~~~~~f~p~~i 118 (217)
+..++.+-..+-.|+++.-|++|+....|++. .+..+..++.....+ .+.+.+++.++
T Consensus 16 i~dWl~~~~adtldal~arfaedftMitP~GviLD~~Alg~~frs~rac----rpGl~I~ie~i 75 (130)
T COG4460 16 IVDWLVAARADTLDALRARFAEDFTMITPSGVILDRDALGDHFRSSRAC----RPGLAISIEDI 75 (130)
T ss_pred HHHHHHhcccccHHHHHHHHhcCceEecCCceEeccHHHHHHHHhccCC----CCCeEEEEecc
Confidence 44455554567789999999999998877753 456777777766555 35566555443
No 44
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.
Probab=36.68 E-value=19 Score=27.96 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHhhccCCE
Q 041268 52 KNQRVVLALYDALKSRDVETVHKILAPDL 80 (217)
Q Consensus 52 ~nk~lV~~fyeA~~~gD~e~l~aLlA~Dv 80 (217)
.-+++...+.+|+.+||.+.+..++++++
T Consensus 23 ~ak~~f~~i~~A~~~~D~~~l~~~~t~~~ 51 (147)
T PF04280_consen 23 EAKEAFLPIQEAWAKGDLEALRPLLTEEL 51 (147)
T ss_dssp HHHHTHHHHHHHHHHT-HHHHHHHB-HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhCHHH
Confidence 35667777888999999999999999986
No 45
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=36.65 E-value=60 Score=20.39 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=11.7
Q ss_pred EEEEEEECCEEEEEE
Q 041268 139 VHAWTVADGIITQVR 153 (217)
Q Consensus 139 v~vftv~DGkIteir 153 (217)
-..+++.||+|+++.
T Consensus 17 sV~iiiqdG~vvQIe 31 (38)
T PF10055_consen 17 SVTIIIQDGRVVQIE 31 (38)
T ss_pred eEEEEEECCEEEEEE
Confidence 336778999999985
No 46
>PLN02382 probable sucrose-phosphatase
Probab=36.53 E-value=2.6e+02 Score=26.17 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=44.1
Q ss_pred HHHHHH--HHHHHHhcCC-------HHHHHhhccCCEEEEEcCCC--cHHHHHHHHhhhhhccccCCCc--eEEEEEEE-
Q 041268 53 NQRVVL--ALYDALKSRD-------VETVHKILAPDLEWWFHGPP--THQFMMHLLTGSTTASSASQSS--FVFVPLSI- 118 (217)
Q Consensus 53 nk~lV~--~fyeA~~~gD-------~e~l~aLlA~Dvvw~~~Gp~--G~~~~~~~L~g~~~~~~~~~~~--~~f~p~~i- 118 (217)
-.++|+ .+|+.|.+|+ ++.+.+.++|++++..+.+. ...+....|+..... .++ +++.+.++
T Consensus 284 ~~evv~~~~~~e~W~~~~~~~~~~~~~~l~~~~~p~~~~v~p~G~~~~~~~~~~~~~~~~G~----~~g~~~~i~vd~~~ 359 (413)
T PLN02382 284 AHEVVKFYLFYEKWRRGEVENSDEVFQRLKSSCAPNGVFVHPSGVEKSLHDSIDELRSCYGD----KKGKKFRVWVDRVL 359 (413)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhcCCCeeEECCCcccCCHHHHHHHHHHhhCC----CCCCEEEEEEeeEE
Confidence 444544 4566777776 78899999999998766542 344566666655333 244 66655443
Q ss_pred --EEeCCEEEEE
Q 041268 119 --TSFGPIVLAE 128 (217)
Q Consensus 119 --ia~Gd~Vvve 128 (217)
....+.++|.
T Consensus 360 ~~~~~~~~~~v~ 371 (413)
T PLN02382 360 STQLGPDTWLVK 371 (413)
T ss_pred EEEEcCCeEEEE
Confidence 3334666665
No 47
>PF09697 Porph_ging: Protein of unknown function (Porph_ging); InterPro: IPR019115 This family of proteins of unknown function is found in species belonging to the bacteroidetes.
Probab=33.92 E-value=20 Score=25.41 Aligned_cols=7 Identities=57% Similarity=1.308 Sum_probs=6.2
Q ss_pred CCCceee
Q 041268 209 SVPGLVL 215 (217)
Q Consensus 209 ~~pglvl 215 (217)
.||||||
T Consensus 63 GLPGLIL 69 (70)
T PF09697_consen 63 GLPGLIL 69 (70)
T ss_pred CCCeEEe
Confidence 5999998
No 48
>COG3558 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.52 E-value=23 Score=28.22 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHhhccCCEEEEEcCC--CcHHHHHHHHhhhhh
Q 041268 50 ENKNQRVVLALYDALKSRDVETVHKILAPDLEWWFHGP--PTHQFMMHLLTGSTT 102 (217)
Q Consensus 50 ~~~nk~lV~~fyeA~~~gD~e~l~aLlA~Dvvw~~~Gp--~G~~~~~~~L~g~~~ 102 (217)
.+...+-|+..=++++++|.+.+.--+++|-.|..-.. .|++.+..||++...
T Consensus 11 ~eta~~kvr~aed~wnsrdp~kv~layt~ds~wrnraef~~gre~i~~fl~rkw~ 65 (154)
T COG3558 11 AETAIQKVRMAEDAWNSRDPAKVALAYTEDSFWRNRAEFFQGREKIQEFLTRKWD 65 (154)
T ss_pred HHHHHHHHHHhHhccccCChhheeeeeccchhhhhHHHHHccHHHHHHHHHhhhh
Confidence 44566778888889999999999999999998864332 478888889887644
No 49
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=30.10 E-value=1.2e+02 Score=23.54 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=29.4
Q ss_pred EEEEEeeCCceeecEEE-EEEEECCEEEEEEEEeCHHHHHHHhcC
Q 041268 124 IVLAEGCDHSRQISWVH-AWTVADGIITQVREYFNTSLTVTRFGK 167 (217)
Q Consensus 124 ~VvveG~~g~~~~~~v~-vftv~DGkIteireY~Dt~~lv~~lg~ 167 (217)
.++..||++...++.+. -+.++||||-=-++-.+....-+.+-.
T Consensus 42 ll~~~GW~~~~ri~g~~iH~dI~dgKIWIq~d~TE~gIa~eLve~ 86 (111)
T PF08869_consen 42 LLMSVGWDNQRRIHGCLIHLDIKDGKIWIQRDGTEDGIAEELVEA 86 (111)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEETTEEEEEEESSSSHHHHHHHHT
T ss_pred EEEEeeEECCEEEEEEEEEEEEECCeEEEEcCchhhHHHHHHHHc
Confidence 35555988776555444 577899999888877776655554433
No 50
>TIGR03580 EF_0832 conserved hypothetical protein EF_0832/AHA_3913. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=29.90 E-value=24 Score=29.96 Aligned_cols=21 Identities=33% Similarity=0.697 Sum_probs=14.4
Q ss_pred ccccccC----CCCCCCCCceeeeC
Q 041268 197 VWESSVS----NRDGKSVPGLVLAL 217 (217)
Q Consensus 197 ~w~s~~~----~~~~~~~pglvlai 217 (217)
+|---+. --.++.+|||||.|
T Consensus 148 ~w~Ti~GGla~liMGNavPG~VLGI 172 (233)
T TIGR03580 148 FWGTIFGGLAQLIMGNAVPGVVLGI 172 (233)
T ss_pred cHHHHHhhHHHHHhcCCCcceeeee
Confidence 4654443 23578999999986
No 51
>PF14188 DUF4311: Domain of unknown function (DUF4311)
Probab=26.42 E-value=31 Score=29.06 Aligned_cols=13 Identities=46% Similarity=0.876 Sum_probs=10.7
Q ss_pred CCCCCCCceeeeC
Q 041268 205 RDGKSVPGLVLAL 217 (217)
Q Consensus 205 ~~~~~~pglvlai 217 (217)
..++.+||+||.|
T Consensus 161 iMGNAvPG~VLGI 173 (213)
T PF14188_consen 161 IMGNAVPGIVLGI 173 (213)
T ss_pred HhcCCCcceeeEe
Confidence 3568999999986
No 52
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=25.39 E-value=1.8e+02 Score=20.47 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=25.4
Q ss_pred EEEEEEEEeCCEEEEEee-C-CceeecEEEEEEEECCEEEEEE
Q 041268 113 FVPLSITSFGPIVLAEGC-D-HSRQISWVHAWTVADGIITQVR 153 (217)
Q Consensus 113 f~p~~iia~Gd~VvveG~-~-g~~~~~~v~vftv~DGkIteir 153 (217)
=.|-.+..++|..+++|. . +..--.+..+..=.||||..+.
T Consensus 21 ekP~~v~~~~~~WiV~Gtl~~~~~GGv~~I~I~K~dgkVl~v~ 63 (66)
T PF15631_consen 21 EKPYRVTLDGDSWIVEGTLPPGMLGGVFYIEIRKKDGKVLNVT 63 (66)
T ss_pred cCCeEEecCCCeEEEEeecCCCccCCeEEEEEEccCCeEEEEE
Confidence 345677788999999985 2 1111112224444899998874
No 53
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=23.58 E-value=59 Score=22.39 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHhhccCCE
Q 041268 54 QRVVLALYDALKSRDVETVHKILAPDL 80 (217)
Q Consensus 54 k~lV~~fyeA~~~gD~e~l~aLlA~Dv 80 (217)
.++++++++|+.++|.+.+.+++..=+
T Consensus 2 ~~~~~~l~~al~~~d~~~~~~~~~~~l 28 (79)
T PF02607_consen 2 EELIERLLDALLAGDEEEAEALLEEAL 28 (79)
T ss_dssp HHHHHHHHHHHHTT-CCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 357899999999999888877776544
No 54
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=22.64 E-value=57 Score=30.56 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCHHHHHhhccCCE
Q 041268 55 RVVLALYDALKSRDVETVHKILAPDL 80 (217)
Q Consensus 55 ~lV~~fyeA~~~gD~e~l~aLlA~Dv 80 (217)
.++....+|+..||.+.|..+|++++
T Consensus 253 aI~p~ILeAf~kGD~e~LK~~lse~v 278 (378)
T TIGR00984 253 YIVPEILEAYVKGDLEVLKSWCSEAP 278 (378)
T ss_pred HHHHHHHHHHHcCCHHHHHHhhCHHH
Confidence 34688899999999999999999995
No 55
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=20.51 E-value=1.4e+02 Score=21.14 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.3
Q ss_pred EEEEECCEEEEEEEEeCH
Q 041268 141 AWTVADGIITQVREYFNT 158 (217)
Q Consensus 141 vftv~DGkIteireY~Dt 158 (217)
-+.|++|+|..++-|-|-
T Consensus 21 ~~~V~~G~I~~i~i~gDf 38 (86)
T PF10437_consen 21 HLNVKNGIIKDIKIYGDF 38 (86)
T ss_dssp EEEEETTEEEEEEEEECB
T ss_pred EEEEECCEEEEEEEECCC
Confidence 577899999999998763
Done!