BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041271
         (310 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
          Length = 151

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 5/96 (5%)

Query: 130 AFLNAVIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLXXXXXXGDTIPE 189
           AF NA + W+ + + HV KA L PG+KKE+VK+E+ED      ++V         D   +
Sbjct: 40  AFANARMDWKETPEAHVFKADL-PGVKKEEVKVEVEDGNV---LVVSGERTKEKEDKNDK 95

Query: 190 WLLEEFTDGKIIRRFKLPADVRLDDFKTEMEEDGVL 225
           W   E + GK +RRF+L  D ++++ K  + E+GVL
Sbjct: 96  WHRVERSSGKFVRRFRLLEDAKVEEVKAGL-ENGVL 130


>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
           Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
          Length = 101

 Score = 37.0 bits (84), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 5/93 (5%)

Query: 133 NAVIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLXXXXXXGDTIPEWLL 192
           NA + W+ + + HV KA L PG+KKE+VK+E+ED      ++V         D   +W  
Sbjct: 1   NARMDWKETPEAHVFKADL-PGVKKEEVKVEVEDGNV---LVVSGERTKEKEDKNDKWHR 56

Query: 193 EEFTDGKIIRRFKLPADVRLDDFKTEMEEDGVL 225
            E + GK +RRF+L  D ++++ K  + E+GVL
Sbjct: 57  VERSSGKFVRRFRLLEDAKVEEVKAGL-ENGVL 88


>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
           Flexibility In The Small Heat Shock Protein Hsp26
          Length = 93

 Score = 33.9 bits (76), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 5/92 (5%)

Query: 134 AVIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLXXXXXXGDTIPEWLLE 193
           A + W+ + + HV KA L PG+KKE+VK+E+ED      ++V         D   +W   
Sbjct: 1   ARMDWKETPEAHVFKADL-PGVKKEEVKVEVEDGNV---LVVSGERTKEKEDKNDKWHRV 56

Query: 194 EFTDGKIIRRFKLPADVRLDDFKTEMEEDGVL 225
           E + GK +RRF+L  D ++++ K  + E+GVL
Sbjct: 57  ERSSGKFVRRFRLLEDAKVEEVKAGL-ENGVL 87


>pdb|1AK0|A Chain A, P1 Nuclease In Complex With A Substrate Analog
          Length = 270

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 2   SLSINMDLPAFITESSKFIDSSNIS------TRWEYDGDKIVCKASLP----AVRMEDVK 51
           +L  N++   +  ++  +I   NIS      TRW  D + +VC   +P    A++  D+ 
Sbjct: 175 TLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQTGDLY 234

Query: 52  IDINDKELTLTRELNIADGGTILRRFLK 79
               D  +  T EL IA GG  L  ++ 
Sbjct: 235 PTYYDSVID-TIELQIAKGGYRLANWIN 261


>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
          Length = 147

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 12/87 (13%)

Query: 143 DKHVLKASLLPGMKKEDVKIEIEDDGAELKM----IVLLXXXXXXGDTIPEWLLEEFTDG 198
           D+H+   + LPG+ KED+ +    D  E++     +++          IPE       + 
Sbjct: 51  DQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPE-------EE 103

Query: 199 KIIRRFKLPADVRLDDFKTEMEEDGVL 225
           +I R  KLPA V+ ++   +  E+GVL
Sbjct: 104 EIYRTIKLPATVKEENASAKF-ENGVL 129


>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
           Shock Protein Hsp16.5
 pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
           Shock Protein Hsp16.5
          Length = 161

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 12/87 (13%)

Query: 143 DKHVLKASLLPGMKKEDVKIEIEDDGAELKM----IVLLXXXXXXGDTIPEWLLEEFTDG 198
           D+H+   + LPG+ KED+ +    D  E++     +++          IPE       + 
Sbjct: 65  DQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPE-------EE 117

Query: 199 KIIRRFKLPADVRLDDFKTEMEEDGVL 225
           +I R  KLPA V+ ++   +  E+GVL
Sbjct: 118 EIYRTIKLPATVKEENASAKF-ENGVL 143


>pdb|4I95|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_00036)
           From Bacteroides Eggerthii Dsm 20697 At 1.81 A
           Resolution
 pdb|4I95|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_00036)
           From Bacteroides Eggerthii Dsm 20697 At 1.81 A
           Resolution
          Length = 142

 Score = 27.7 bits (60), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 80  VSRNFDLPDGVKRSNFKSTSMEDGVLTVTFTRDAAATANTSSRSVYKKVIAFLNAVIYWE 139
           VS N D+P  +K SN      +DG + V FT      A  +    Y+++    +A  Y E
Sbjct: 22  VSENPDIPGVLKPSNTFKVLSDDGRI-VNFTIRPGTDAIITGYGTYRQI----SAAAYKE 76

Query: 140 TSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLXXXXXXGDTIPEWLLEEF 195
            S++K++     LP +  +D  +E E     +  +         G+ +  W  E +
Sbjct: 77  -SIEKNI----HLPXLDNKDNILEFEXGAGGVXYLKYFIEKDLNGNELNTWFHETW 127


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,957,479
Number of Sequences: 62578
Number of extensions: 245491
Number of successful extensions: 543
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 531
Number of HSP's gapped (non-prelim): 12
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)