Query 041271
Match_columns 310
No_of_seqs 227 out of 2306
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:28:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 99.9 3.3E-23 7.1E-28 175.7 13.7 106 132-248 31-137 (142)
2 COG0071 IbpA Molecular chapero 99.9 5.4E-23 1.2E-27 175.3 13.9 109 131-246 38-146 (146)
3 PRK10743 heat shock protein Ib 99.9 6.2E-23 1.3E-27 173.2 13.5 102 134-246 35-137 (137)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 1.6E-22 3.5E-27 159.3 11.5 91 135-231 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 2E-21 4.4E-26 154.9 13.2 102 137-246 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 2.8E-21 6.1E-26 152.2 11.5 91 134-231 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.8 1.4E-20 3E-25 147.9 12.5 89 134-231 1-90 (90)
8 PRK10743 heat shock protein Ib 99.8 2.2E-20 4.9E-25 157.7 11.3 88 24-114 34-126 (137)
9 PRK11597 heat shock chaperone 99.8 4.8E-20 1E-24 156.3 11.5 90 22-114 30-124 (142)
10 cd06497 ACD_alphaA-crystallin_ 99.8 1.2E-19 2.6E-24 141.6 11.0 82 137-231 4-86 (86)
11 cd06472 ACD_ScHsp26_like Alpha 99.8 1.6E-19 3.4E-24 142.2 10.2 85 26-111 1-92 (92)
12 COG0071 IbpA Molecular chapero 99.8 4.5E-19 9.6E-24 151.2 12.4 93 23-116 39-137 (146)
13 cd06479 ACD_HspB7_like Alpha c 99.8 2.5E-19 5.5E-24 138.2 9.1 79 137-231 2-81 (81)
14 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 4.7E-19 1E-23 137.3 10.6 82 137-231 1-83 (83)
15 cd06471 ACD_LpsHSP_like Group 99.8 5.4E-19 1.2E-23 139.2 10.3 85 25-111 1-93 (93)
16 cd06498 ACD_alphaB-crystallin_ 99.8 7E-19 1.5E-23 136.7 10.7 83 138-232 2-84 (84)
17 cd06481 ACD_HspB9_like Alpha c 99.8 1.3E-18 2.8E-23 136.0 10.4 83 140-231 4-87 (87)
18 cd06476 ACD_HspB2_like Alpha c 99.8 3.7E-18 8E-23 132.4 10.9 82 138-231 2-83 (83)
19 cd06470 ACD_IbpA-B_like Alpha- 99.8 3.3E-18 7.1E-23 134.4 10.6 84 25-111 1-90 (90)
20 cd06479 ACD_HspB7_like Alpha c 99.8 1.6E-18 3.5E-23 133.8 8.3 79 28-111 2-81 (81)
21 cd06482 ACD_HspB10 Alpha cryst 99.8 5.4E-18 1.2E-22 132.5 10.2 82 141-231 6-87 (87)
22 cd06475 ACD_HspB1_like Alpha c 99.7 7.5E-18 1.6E-22 131.4 10.2 83 136-230 3-85 (86)
23 cd06464 ACD_sHsps-like Alpha-c 99.7 1.2E-17 2.5E-22 128.4 11.2 88 137-231 1-88 (88)
24 cd06475 ACD_HspB1_like Alpha c 99.7 1.4E-17 3E-22 129.9 9.6 83 27-111 3-86 (86)
25 cd06497 ACD_alphaA-crystallin_ 99.7 1.6E-17 3.5E-22 129.6 10.0 81 28-111 4-86 (86)
26 cd06477 ACD_HspB3_Like Alpha c 99.7 3E-17 6.5E-22 127.2 10.8 79 139-230 3-82 (83)
27 cd06526 metazoan_ACD Alpha-cry 99.7 1.9E-17 4E-22 128.0 9.1 77 142-231 6-83 (83)
28 cd06482 ACD_HspB10 Alpha cryst 99.7 2.3E-17 5.1E-22 128.9 9.3 78 32-110 6-86 (87)
29 cd06476 ACD_HspB2_like Alpha c 99.7 2.7E-17 5.9E-22 127.5 9.2 81 29-111 2-83 (83)
30 cd06498 ACD_alphaB-crystallin_ 99.7 3E-17 6.5E-22 127.5 9.3 81 29-112 2-84 (84)
31 PF00011 HSP20: Hsp20/alpha cr 99.7 5.6E-17 1.2E-21 129.2 10.9 89 28-117 1-93 (102)
32 cd06478 ACD_HspB4-5-6 Alpha-cr 99.7 5E-17 1.1E-21 125.9 9.8 81 28-111 1-83 (83)
33 cd06481 ACD_HspB9_like Alpha c 99.7 4.3E-17 9.2E-22 127.5 9.3 80 31-111 4-87 (87)
34 cd06477 ACD_HspB3_Like Alpha c 99.7 8.6E-17 1.9E-21 124.6 8.6 78 30-110 3-82 (83)
35 cd06526 metazoan_ACD Alpha-cry 99.7 2.1E-16 4.6E-21 122.1 8.6 77 33-111 6-83 (83)
36 cd06464 ACD_sHsps-like Alpha-c 99.7 6.1E-16 1.3E-20 118.8 10.0 83 28-111 1-88 (88)
37 cd06480 ACD_HspB8_like Alpha-c 99.6 1.7E-15 3.6E-20 119.3 9.5 82 138-231 10-91 (91)
38 KOG0710 Molecular chaperone (s 99.6 8.7E-16 1.9E-20 137.1 6.7 115 127-246 78-195 (196)
39 KOG3591 Alpha crystallins [Pos 99.6 1.7E-14 3.6E-19 126.3 11.2 105 134-251 63-167 (173)
40 cd06480 ACD_HspB8_like Alpha-c 99.5 5.3E-14 1.1E-18 110.8 8.4 80 29-110 10-90 (91)
41 cd00298 ACD_sHsps_p23-like Thi 99.3 1.1E-11 2.3E-16 91.7 9.5 80 138-231 1-80 (80)
42 KOG0710 Molecular chaperone (s 99.3 3.7E-12 8E-17 113.8 6.1 94 22-116 82-184 (196)
43 cd00298 ACD_sHsps_p23-like Thi 99.3 4.3E-11 9.2E-16 88.5 9.2 80 29-111 1-80 (80)
44 KOG3591 Alpha crystallins [Pos 99.2 1.4E-10 3.1E-15 101.6 9.5 91 25-117 63-154 (173)
45 cd06469 p23_DYX1C1_like p23_li 98.9 4.7E-09 1E-13 79.4 8.7 69 138-232 1-69 (78)
46 cd06469 p23_DYX1C1_like p23_li 98.9 1.3E-08 2.7E-13 77.0 8.9 71 29-114 1-71 (78)
47 PF05455 GvpH: GvpH; InterPro 98.7 1.5E-07 3.2E-12 82.2 9.4 78 24-116 91-172 (177)
48 PF05455 GvpH: GvpH; InterPro 98.5 8.3E-07 1.8E-11 77.6 10.4 79 130-232 88-168 (177)
49 cd06463 p23_like Proteins cont 98.5 7.2E-07 1.6E-11 67.1 9.0 73 139-232 2-74 (84)
50 cd06463 p23_like Proteins cont 98.4 1.5E-06 3.3E-11 65.3 8.9 76 29-114 1-76 (84)
51 cd06466 p23_CS_SGT1_like p23_l 98.2 7.5E-06 1.6E-10 62.4 7.6 75 137-232 1-75 (84)
52 cd06466 p23_CS_SGT1_like p23_l 98.1 9.2E-06 2E-10 61.9 7.2 77 28-114 1-77 (84)
53 PF04969 CS: CS domain; Inter 97.9 0.00038 8.1E-09 51.7 11.6 77 134-231 1-79 (79)
54 PF04969 CS: CS domain; Inter 97.6 0.0012 2.6E-08 49.0 11.0 77 25-111 1-79 (79)
55 cd06465 p23_hB-ind1_like p23_l 97.2 0.0036 7.9E-08 50.3 9.8 77 134-232 1-77 (108)
56 PF08190 PIH1: pre-RNA process 97.2 0.0018 4E-08 61.5 8.9 65 33-110 260-327 (328)
57 cd06465 p23_hB-ind1_like p23_l 97.2 0.0049 1.1E-07 49.5 10.0 78 25-113 1-78 (108)
58 PF08190 PIH1: pre-RNA process 97.1 0.0025 5.4E-08 60.6 9.1 66 142-230 260-327 (328)
59 cd06489 p23_CS_hSgt1_like p23_ 97.0 0.0052 1.1E-07 47.0 8.1 75 137-232 1-75 (84)
60 cd06489 p23_CS_hSgt1_like p23_ 97.0 0.005 1.1E-07 47.1 7.9 76 28-113 1-76 (84)
61 cd06467 p23_NUDC_like p23_like 96.7 0.015 3.2E-07 44.3 8.7 72 137-232 2-75 (85)
62 cd06467 p23_NUDC_like p23_like 96.5 0.032 6.9E-07 42.4 9.4 74 28-114 2-77 (85)
63 cd06488 p23_melusin_like p23_l 96.5 0.031 6.7E-07 43.3 9.2 79 26-114 2-80 (87)
64 cd06488 p23_melusin_like p23_l 96.3 0.038 8.2E-07 42.8 9.1 77 135-232 2-78 (87)
65 cd06493 p23_NUDCD1_like p23_NU 96.3 0.036 7.8E-07 42.6 8.9 72 137-232 2-75 (85)
66 cd06468 p23_CacyBP p23_like do 96.3 0.054 1.2E-06 41.9 10.0 77 135-232 3-83 (92)
67 cd06494 p23_NUDCD2_like p23-li 96.0 0.069 1.5E-06 42.2 9.2 75 133-232 5-81 (93)
68 cd06493 p23_NUDCD1_like p23_NU 96.0 0.092 2E-06 40.3 9.8 74 28-114 2-77 (85)
69 cd06468 p23_CacyBP p23_like do 95.8 0.11 2.3E-06 40.2 9.6 79 26-114 3-85 (92)
70 cd06494 p23_NUDCD2_like p23-li 94.5 0.54 1.2E-05 37.1 9.9 77 24-114 5-83 (93)
71 cd00237 p23 p23 binds heat sho 94.0 0.81 1.8E-05 36.9 10.1 78 25-114 2-79 (106)
72 cd00237 p23 p23 binds heat sho 94.0 0.81 1.8E-05 36.9 10.0 76 134-232 2-77 (106)
73 KOG1309 Suppressor of G2 allel 93.3 0.28 6.1E-06 43.3 6.6 79 133-232 3-81 (196)
74 PLN03088 SGT1, suppressor of 93.0 0.45 9.7E-06 46.2 8.5 79 133-232 156-234 (356)
75 PLN03088 SGT1, suppressor of 92.9 0.48 1E-05 46.0 8.4 81 24-114 156-236 (356)
76 KOG1309 Suppressor of G2 allel 92.8 0.37 7.9E-06 42.6 6.7 79 24-112 3-81 (196)
77 cd06492 p23_mNUDC_like p23-lik 91.0 1.9 4.2E-05 33.4 8.3 71 138-232 3-77 (87)
78 cd06495 p23_NUDCD3_like p23-li 90.4 2.2 4.7E-05 34.3 8.3 79 133-232 4-85 (102)
79 cd06490 p23_NCB5OR p23_like do 89.8 4.1 8.9E-05 31.4 9.2 75 136-232 1-78 (87)
80 cd06490 p23_NCB5OR p23_like do 89.0 5.1 0.00011 30.9 9.2 76 27-114 1-80 (87)
81 cd06492 p23_mNUDC_like p23-lik 82.2 19 0.00042 27.7 9.4 72 29-113 3-78 (87)
82 cd06495 p23_NUDCD3_like p23-li 76.8 37 0.00079 27.2 10.1 79 25-113 5-86 (102)
83 PF14913 DPCD: DPCD protein fa 71.4 16 0.00035 32.7 6.8 78 23-114 85-171 (194)
84 PF14913 DPCD: DPCD protein fa 69.9 37 0.0008 30.4 8.7 78 132-232 85-169 (194)
85 PF13349 DUF4097: Domain of un 63.8 69 0.0015 26.6 9.2 83 134-229 66-148 (166)
86 CHL00140 rpl6 ribosomal protei 58.9 73 0.0016 28.0 8.7 140 47-232 12-176 (178)
87 TIGR03654 L6_bact ribosomal pr 54.1 81 0.0018 27.6 8.1 44 47-110 11-54 (175)
88 PRK05498 rplF 50S ribosomal pr 53.5 72 0.0016 28.0 7.7 44 47-110 12-55 (178)
89 KOG2265 Nuclear distribution p 52.7 73 0.0016 28.2 7.4 78 132-232 17-95 (179)
90 COG5091 SGT1 Suppressor of G2 45.1 19 0.00041 34.3 2.7 52 13-64 165-216 (368)
91 PF12992 DUF3876: Domain of un 40.4 95 0.0021 24.6 5.8 45 18-62 18-68 (95)
92 PF10571 UPF0547: Uncharacteri 37.2 11 0.00023 22.8 -0.1 15 283-297 10-24 (26)
93 KOG1667 Zn2+-binding protein M 34.6 1.4E+02 0.0031 28.1 6.7 84 24-116 214-297 (320)
94 PF00347 Ribosomal_L6: Ribosom 34.0 64 0.0014 23.5 3.7 46 47-110 2-47 (77)
95 PF04972 BON: BON domain; Int 33.5 76 0.0016 22.2 3.9 24 43-66 12-35 (64)
96 PF08308 PEGA: PEGA domain; I 33.0 1.4E+02 0.0031 21.3 5.4 39 26-64 26-66 (71)
97 PF10070 DUF2309: Uncharacteri 32.6 36 0.00079 36.9 2.9 31 269-299 482-512 (788)
98 COG5091 SGT1 Suppressor of G2 30.9 31 0.00066 32.9 1.8 83 130-232 173-255 (368)
99 PF13349 DUF4097: Domain of un 29.9 3.2E+02 0.0069 22.5 9.2 36 25-64 66-101 (166)
100 PRK05518 rpl6p 50S ribosomal p 29.1 2.3E+02 0.0049 25.1 6.9 45 157-230 13-57 (180)
101 cd01759 PLAT_PL PLAT/LH2 domai 26.9 3.2E+02 0.007 22.2 7.0 46 200-252 46-92 (113)
102 TIGR03654 L6_bact ribosomal pr 26.5 2.5E+02 0.0054 24.5 6.7 44 157-230 11-54 (175)
103 KOG1667 Zn2+-binding protein M 26.2 2.5E+02 0.0055 26.5 6.8 82 131-232 212-293 (320)
104 TIGR03653 arch_L6P archaeal ri 25.7 3E+02 0.0066 24.0 7.0 45 157-230 7-51 (170)
105 PF04972 BON: BON domain; Int 25.0 1.1E+02 0.0024 21.3 3.5 25 153-181 12-36 (64)
106 PTZ00027 60S ribosomal protein 24.9 2.5E+02 0.0053 25.0 6.4 48 157-231 13-60 (190)
107 PF09972 DUF2207: Predicted me 24.6 6.8E+02 0.015 24.6 16.2 36 196-232 130-176 (511)
108 PRK05498 rplF 50S ribosomal pr 24.0 2.7E+02 0.0058 24.3 6.5 44 157-230 12-55 (178)
109 KOG3247 Uncharacterized conser 20.7 62 0.0013 32.5 1.9 79 23-115 2-82 (466)
110 PF01954 DUF104: Protein of un 20.3 1.3E+02 0.0029 21.7 3.1 32 213-249 3-34 (60)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.90 E-value=3.3e-23 Score=175.67 Aligned_cols=106 Identities=17% Similarity=0.292 Sum_probs=92.4
Q ss_pred ecceEEEee-cCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCc
Q 041271 132 LNAVIYWET-SLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADV 210 (310)
Q Consensus 132 ~~p~vdv~e-t~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~v 210 (310)
..|++||.+ ++++|.|.++ |||++++||+|++++|. |+| +|+++. +.++.+|+++|+.+|.|.|+|.||.+|
T Consensus 31 ~~P~vdI~e~~~~~y~v~ad-lPGv~kedi~V~v~~~~--LtI--~ge~~~--~~~~~~~~~~Er~~g~F~R~f~LP~~v 103 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLA-LAGFRQEDLDIQLEGTR--LTV--KGTPEQ--PEKEVKWLHQGLVNQPFSLSFTLAENM 103 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEE-eCCCCHHHeEEEEECCE--EEE--EEEEcc--ccCCCcEEEEEEeCcEEEEEEECCCCc
Confidence 348899998 5779999999 99999999999999999 999 999764 345678999999999999999999999
Q ss_pred ccCCeEEEeeeCCEEEEEEeCCCCCCCCCceEEEEecC
Q 041271 211 RLDDFKTEMEEDGVLTVTFTKPIKPKKTQQQLISKLLG 248 (310)
Q Consensus 211 d~~~I~A~l~~dGvL~ItvPK~~~~~~~~~r~I~I~~~ 248 (310)
|.+ +|+|+ ||||+|++||. .++..++++|+|+..
T Consensus 104 d~~--~A~~~-nGVL~I~lPK~-~~~~~~~rkI~I~~~ 137 (142)
T PRK11597 104 EVS--GATFV-NGLLHIDLIRN-EPEAIAPQRIAISER 137 (142)
T ss_pred ccC--cCEEc-CCEEEEEEecc-CccccCCcEEEECCc
Confidence 998 69999 99999999997 333445699999543
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.4e-23 Score=175.30 Aligned_cols=109 Identities=31% Similarity=0.450 Sum_probs=100.0
Q ss_pred eecceEEEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCc
Q 041271 131 FLNAVIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADV 210 (310)
Q Consensus 131 ~~~p~vdv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~v 210 (310)
.+.|++||.++++.|.|.++ ||||+++||+|+++++. |+| +|+++.+...+...|+++|+.+|.|.|+|.||..|
T Consensus 38 ~~~P~vdi~e~~~~~~I~~e-lPG~~kedI~I~~~~~~--l~I--~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v 112 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAE-LPGVDKEDIEITVEGNT--LTI--RGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKV 112 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEE-cCCCChHHeEEEEECCE--EEE--EEEecccccccCCceEEEEEEeeeEEEEEECcccc
Confidence 36799999999999999999 99999999999999999 999 99998877778889999999999999999999999
Q ss_pred ccCCeEEEeeeCCEEEEEEeCCCCCCCCCceEEEEe
Q 041271 211 RLDDFKTEMEEDGVLTVTFTKPIKPKKTQQQLISKL 246 (310)
Q Consensus 211 d~~~I~A~l~~dGvL~ItvPK~~~~~~~~~r~I~I~ 246 (310)
+.+.++|+|+ ||||+|++||. +++....++|+|+
T Consensus 113 ~~~~~~A~~~-nGvL~I~lpk~-~~~~~~~~~i~I~ 146 (146)
T COG0071 113 DPEVIKAKYK-NGLLTVTLPKA-EPEEKKPKRIEIE 146 (146)
T ss_pred cccceeeEee-CcEEEEEEecc-ccccccCceeecC
Confidence 9999999999 99999999999 4444455888773
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.90 E-value=6.2e-23 Score=173.24 Aligned_cols=102 Identities=14% Similarity=0.288 Sum_probs=90.7
Q ss_pred ceEEEe-ecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCccc
Q 041271 134 AVIYWE-TSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRL 212 (310)
Q Consensus 134 p~vdv~-et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~ 212 (310)
|++||. +++++|.|.++ |||++++||+|+++++. |+| +|+++.+ .++.+|+++|+.+|+|.|+|.||.+||.
T Consensus 35 p~~di~ee~~~~~~v~ae-lPGv~kedi~V~v~~~~--LtI--~ge~~~~--~~~~~~~~~Er~~g~F~R~~~LP~~Vd~ 107 (137)
T PRK10743 35 PPYNVELVDENHYRIAIA-VAGFAESELEITAQDNL--LVV--KGAHADE--QKERTYLYQGIAERNFERKFQLAENIHV 107 (137)
T ss_pred CcEEEEEcCCCEEEEEEE-CCCCCHHHeEEEEECCE--EEE--EEEECcc--ccCCcEEEEEEECCEEEEEEECCCCccc
Confidence 889999 58999999999 99999999999999999 999 9997654 3556799999999999999999999999
Q ss_pred CCeEEEeeeCCEEEEEEeCCCCCCCCCceEEEEe
Q 041271 213 DDFKTEMEEDGVLTVTFTKPIKPKKTQQQLISKL 246 (310)
Q Consensus 213 ~~I~A~l~~dGvL~ItvPK~~~~~~~~~r~I~I~ 246 (310)
++ |+|+ ||||+|++||. .++..++|+|+|+
T Consensus 108 ~~--A~~~-dGVL~I~lPK~-~~~~~~~r~I~I~ 137 (137)
T PRK10743 108 RG--ANLV-NGLLYIDLERV-IPEAKKPRRIEIN 137 (137)
T ss_pred Cc--CEEe-CCEEEEEEeCC-CccccCCeEEeeC
Confidence 94 9999 99999999997 3444556999984
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.89 E-value=1.6e-22 Score=159.27 Aligned_cols=91 Identities=42% Similarity=0.721 Sum_probs=85.5
Q ss_pred eEEEeecCcEEEEEEecCCCCCCCCeEEEEECC-eeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccC
Q 041271 135 VIYWETSLDKHVLKASLLPGMKKEDVKIEIEDD-GAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLD 213 (310)
Q Consensus 135 ~vdv~et~~~~~i~~~~lPG~~~edI~V~v~~~-~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~ 213 (310)
++||.|+++.|.|.++ ||||+++||+|+++++ . |+| +|+++.+...++.+|+++|+.+|.|.|+|.||.++|.+
T Consensus 1 ~~dv~E~~~~~~i~~~-lPGv~~edi~i~v~~~~~--L~I--~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~ 75 (92)
T cd06472 1 RVDWKETPEAHVFKAD-VPGVKKEDVKVEVEDGRV--LRI--SGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADAD 75 (92)
T ss_pred CccEEEcCCeEEEEEE-CCCCChHhEEEEEeCCCE--EEE--EEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHH
Confidence 4799999999999999 9999999999999976 6 999 99987766667788999999999999999999999999
Q ss_pred CeEEEeeeCCEEEEEEeC
Q 041271 214 DFKTEMEEDGVLTVTFTK 231 (310)
Q Consensus 214 ~I~A~l~~dGvL~ItvPK 231 (310)
.|+|.|+ ||+|+|++||
T Consensus 76 ~i~A~~~-nGvL~I~lPK 92 (92)
T cd06472 76 EVKAFLE-NGVLTVTVPK 92 (92)
T ss_pred HCEEEEE-CCEEEEEecC
Confidence 9999999 9999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.87 E-value=2e-21 Score=154.95 Aligned_cols=102 Identities=30% Similarity=0.455 Sum_probs=84.9
Q ss_pred EEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeE
Q 041271 137 YWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFK 216 (310)
Q Consensus 137 dv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~ 216 (310)
||.++++.|.|.++ ||||.++||+|+++++. |.| +|.+. ....+..++..|++++.|.|+|.||.++|.+.|+
T Consensus 1 di~e~~~~~~i~~~-lpG~~~edi~I~~~~~~--L~I--~g~~~--~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~ 73 (102)
T PF00011_consen 1 DIKEDEDEYIIKVD-LPGFDKEDIKIKVDDNK--LVI--SGKRK--EEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIK 73 (102)
T ss_dssp EEEESSSEEEEEEE--TTS-GGGEEEEEETTE--EEE--EEEEE--GEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-E
T ss_pred CeEECCCEEEEEEE-CCCCChHHEEEEEecCc--cce--eceee--eeeeeeeeeecccccceEEEEEcCCCcCCcceEE
Confidence 78999999999999 99999999999999999 999 99987 4455667888999999999999999999999999
Q ss_pred EEeeeCCEEEEEEeCCCCCCCCCceEEEEe
Q 041271 217 TEMEEDGVLTVTFTKPIKPKKTQQQLISKL 246 (310)
Q Consensus 217 A~l~~dGvL~ItvPK~~~~~~~~~r~I~I~ 246 (310)
|.|+ ||+|+|++||....+....++|+|+
T Consensus 74 a~~~-~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 74 ASYE-NGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEET-TSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEec-CCEEEEEEEccccccCCCCeEEEeC
Confidence 9998 9999999999955545577999985
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.86 E-value=2.8e-21 Score=152.18 Aligned_cols=91 Identities=31% Similarity=0.505 Sum_probs=83.1
Q ss_pred ceEEEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeeccc--CCCccEEEEeeecceEEEEEECCCCcc
Q 041271 134 AVIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEG--DTIPEWLLEEFTDGKIIRRFKLPADVR 211 (310)
Q Consensus 134 p~vdv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~--~~~~~~~~~E~~~g~F~R~~~LP~~vd 211 (310)
+++||.++++.|+|.++ |||++++||+|++.++. |+| +|+++...+ ....+|+++|+.+|.|.|+|.|| +++
T Consensus 1 ~~~di~e~~~~~~i~~~-lPGv~~edi~v~~~~~~--L~I--~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~ 74 (93)
T cd06471 1 MKTDIKETDDEYIVEAD-LPGFKKEDIKLDYKDGY--LTI--SAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVD 74 (93)
T ss_pred CceeEEEcCCEEEEEEE-CCCCCHHHeEEEEECCE--EEE--EEEEccccccccccCCEEEEeeeccEEEEEEECC-CCC
Confidence 36899999999999999 99999999999999999 999 999876432 33457999999999999999999 799
Q ss_pred cCCeEEEeeeCCEEEEEEeC
Q 041271 212 LDDFKTEMEEDGVLTVTFTK 231 (310)
Q Consensus 212 ~~~I~A~l~~dGvL~ItvPK 231 (310)
.+.|+|+|+ ||+|+|++||
T Consensus 75 ~~~i~A~~~-dGvL~I~lPK 93 (93)
T cd06471 75 EEEIKAKYE-NGVLKITLPK 93 (93)
T ss_pred HHHCEEEEE-CCEEEEEEcC
Confidence 999999999 9999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.85 E-value=1.4e-20 Score=147.89 Aligned_cols=89 Identities=22% Similarity=0.422 Sum_probs=82.1
Q ss_pred ceEEEeecC-cEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCccc
Q 041271 134 AVIYWETSL-DKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRL 212 (310)
Q Consensus 134 p~vdv~et~-~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~ 212 (310)
|++||.+++ +.|.|.++ |||++++||+|+++++. |+| +|+++.+.. .+.+|+++|+.+|.|.|+|.||.++|.
T Consensus 1 p~~di~e~~~~~~~v~~~-lPG~~kedi~v~~~~~~--L~I--~g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~ 74 (90)
T cd06470 1 PPYNIEKTGENNYRITLA-VAGFSEDDLEIEVENNQ--LTV--TGKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKV 74 (90)
T ss_pred CCeeeEEcCCCeEEEEEE-CCCCCHHHeEEEEECCE--EEE--EEEEccccc-CCCcEEEEEEeceEEEEEEECCCCceE
Confidence 678999975 99999999 99999999999999999 999 999877655 667899999999999999999999998
Q ss_pred CCeEEEeeeCCEEEEEEeC
Q 041271 213 DDFKTEMEEDGVLTVTFTK 231 (310)
Q Consensus 213 ~~I~A~l~~dGvL~ItvPK 231 (310)
+ +|.|+ ||+|+|++|+
T Consensus 75 ~--~A~~~-~GvL~I~l~~ 90 (90)
T cd06470 75 K--GAELE-NGLLTIDLER 90 (90)
T ss_pred C--eeEEe-CCEEEEEEEC
Confidence 5 89999 9999999986
No 8
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.83 E-value=2.2e-20 Score=157.66 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=78.4
Q ss_pred CceeeEEE-eCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEec----ccceeEEeecceEEeeeCCcccCcCCccee
Q 041271 24 NISTRWEY-DGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIA----DGGTILRRFLKVSRNFDLPDGVKRSNFKST 98 (310)
Q Consensus 24 ~~~~dv~E-~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~----~~~~~er~~g~f~R~~~LP~~vd~~~~~~A 98 (310)
.|++||++ +++.|+|.++||||+++||+|.++++.|+|+|+++.+ .+...||++|+|.|+|.||+.|+ .+ +|
T Consensus 34 ~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd-~~--~A 110 (137)
T PRK10743 34 YPPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIH-VR--GA 110 (137)
T ss_pred CCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcc-cC--cC
Confidence 48899994 9999999999999999999999999999999997653 23567899999999999999999 54 49
Q ss_pred eeeCCeEEEEeecccc
Q 041271 99 SMEDGVLTVTFTRDAA 114 (310)
Q Consensus 99 ~~~dGvL~I~lPK~~~ 114 (310)
.|+||+|+|++||...
T Consensus 111 ~~~dGVL~I~lPK~~~ 126 (137)
T PRK10743 111 NLVNGLLYIDLERVIP 126 (137)
T ss_pred EEeCCEEEEEEeCCCc
Confidence 9999999999999633
No 9
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.83 E-value=4.8e-20 Score=156.34 Aligned_cols=90 Identities=18% Similarity=0.202 Sum_probs=79.5
Q ss_pred CCCceeeEEE-eCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEec----ccceeEEeecceEEeeeCCcccCcCCcc
Q 041271 22 SSNISTRWEY-DGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIA----DGGTILRRFLKVSRNFDLPDGVKRSNFK 96 (310)
Q Consensus 22 ~~~~~~dv~E-~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~----~~~~~er~~g~f~R~~~LP~~vd~~~~~ 96 (310)
...|++||+| +++.|+|.++||||+++||+|.++++.|+|+|+++.+ .+.+.||++|+|.|+|.||+.|| .+
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd-~~-- 106 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENME-VS-- 106 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcc-cC--
Confidence 3458999998 5789999999999999999999999999999997642 24567899999999999999999 44
Q ss_pred eeeeeCCeEEEEeecccc
Q 041271 97 STSMEDGVLTVTFTRDAA 114 (310)
Q Consensus 97 ~A~~~dGvL~I~lPK~~~ 114 (310)
+|.|+||+|+|++||...
T Consensus 107 ~A~~~nGVL~I~lPK~~~ 124 (142)
T PRK11597 107 GATFVNGLLHIDLIRNEP 124 (142)
T ss_pred cCEEcCCEEEEEEeccCc
Confidence 699999999999999743
No 10
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.82 E-value=1.2e-19 Score=141.59 Aligned_cols=82 Identities=21% Similarity=0.350 Sum_probs=73.0
Q ss_pred EEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeE
Q 041271 137 YWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFK 216 (310)
Q Consensus 137 dv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~ 216 (310)
+|.+++++|.|.++ ||||+++||+|++.++. |+| +|++.... +...|+.+ .|.|+|.||.+||.+.|+
T Consensus 4 ~v~e~~~~~~v~~d-lpG~~~edi~V~v~~~~--L~I--~g~~~~~~--~~~~~~~~-----ef~R~~~LP~~Vd~~~i~ 71 (86)
T cd06497 4 EVRSDRDKFTIYLD-VKHFSPEDLTVKVLDDY--VEI--HGKHSERQ--DDHGYISR-----EFHRRYRLPSNVDQSAIT 71 (86)
T ss_pred eEEEcCCEEEEEEE-CCCCCHHHeEEEEECCE--EEE--EEEEccee--CCCCEEEE-----EEEEEEECCCCCChHHeE
Confidence 68999999999999 99999999999999999 999 99864332 33456655 499999999999999999
Q ss_pred EEe-eeCCEEEEEEeC
Q 041271 217 TEM-EEDGVLTVTFTK 231 (310)
Q Consensus 217 A~l-~~dGvL~ItvPK 231 (310)
|.| + ||+|+|++||
T Consensus 72 A~~~~-dGvL~I~~PK 86 (86)
T cd06497 72 CSLSA-DGMLTFSGPK 86 (86)
T ss_pred EEeCC-CCEEEEEecC
Confidence 999 7 9999999998
No 11
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.81 E-value=1.6e-19 Score=142.17 Aligned_cols=85 Identities=31% Similarity=0.497 Sum_probs=76.7
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCceEEEEeC-CEEEEEEEEEec------ccceeEEeecceEEeeeCCcccCcCCccee
Q 041271 26 STRWEYDGDKIVCKASLPAVRMEDVKIDIND-KELTLTRELNIA------DGGTILRRFLKVSRNFDLPDGVKRSNFKST 98 (310)
Q Consensus 26 ~~dv~E~ed~y~v~vdLPGv~~edI~V~v~~-~~L~I~g~~~~~------~~~~~er~~g~f~R~~~LP~~vd~~~~~~A 98 (310)
++||+|+++.|+|.++||||+++||+|.+++ +.|+|+|++..+ .+...+|.+|+|.|+|.||..++ .+.++|
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~-~~~i~A 79 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENAD-ADEVKA 79 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCC-HHHCEE
Confidence 4799999999999999999999999999986 489999998643 13456788999999999999999 889999
Q ss_pred eeeCCeEEEEeec
Q 041271 99 SMEDGVLTVTFTR 111 (310)
Q Consensus 99 ~~~dGvL~I~lPK 111 (310)
.|+||+|+|++||
T Consensus 80 ~~~nGvL~I~lPK 92 (92)
T cd06472 80 FLENGVLTVTVPK 92 (92)
T ss_pred EEECCEEEEEecC
Confidence 9999999999996
No 12
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.5e-19 Score=151.16 Aligned_cols=93 Identities=25% Similarity=0.344 Sum_probs=85.3
Q ss_pred CCceeeEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEec------ccceeEEeecceEEeeeCCcccCcCCcc
Q 041271 23 SNISTRWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIA------DGGTILRRFLKVSRNFDLPDGVKRSNFK 96 (310)
Q Consensus 23 ~~~~~dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~------~~~~~er~~g~f~R~~~LP~~vd~~~~~ 96 (310)
..|++||+|+++.|+|.++||||+++||+|.++++.|+|+|+++.+ .+...+|.+|+|.|+|.||..|+ .+.+
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~-~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVD-PEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccccc-ccce
Confidence 5799999999999999999999999999999999999999999752 23467889999999999999999 7789
Q ss_pred eeeeeCCeEEEEeecccccc
Q 041271 97 STSMEDGVLTVTFTRDAAAT 116 (310)
Q Consensus 97 ~A~~~dGvL~I~lPK~~~a~ 116 (310)
+|.|+||+|+|++||...+.
T Consensus 118 ~A~~~nGvL~I~lpk~~~~~ 137 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEPEE 137 (146)
T ss_pred eeEeeCcEEEEEEecccccc
Confidence 99999999999999988764
No 13
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.80 E-value=2.5e-19 Score=138.20 Aligned_cols=79 Identities=18% Similarity=0.283 Sum_probs=71.7
Q ss_pred EEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeE
Q 041271 137 YWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFK 216 (310)
Q Consensus 137 dv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~ 216 (310)
||.|++++|.|.++ ||||+||||+|+++++. |+| +|+++.+. . ..+|+|.|+|.||.+||++.|+
T Consensus 2 ~v~e~~~~~~v~~d-lpG~~pedi~V~v~~~~--L~I--~ger~~~~----~------~~~g~F~R~~~LP~~vd~e~v~ 66 (81)
T cd06479 2 NVKTLGDTYQFAVD-VSDFSPEDIIVTTSNNQ--IEV--HAEKLASD----G------TVMNTFTHKCQLPEDVDPTSVS 66 (81)
T ss_pred CccCcCCeEEEEEE-CCCCCHHHeEEEEECCE--EEE--EEEEeccC----C------CEEEEEEEEEECCCCcCHHHeE
Confidence 68899999999999 99999999999999999 999 99975432 1 2489999999999999999999
Q ss_pred EEe-eeCCEEEEEEeC
Q 041271 217 TEM-EEDGVLTVTFTK 231 (310)
Q Consensus 217 A~l-~~dGvL~ItvPK 231 (310)
|.| + ||+|+|++++
T Consensus 67 A~l~~-~GvL~I~~~~ 81 (81)
T cd06479 67 SSLGE-DGTLTIKARR 81 (81)
T ss_pred EEecC-CCEEEEEecC
Confidence 998 8 9999999986
No 14
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.80 E-value=4.7e-19 Score=137.29 Aligned_cols=82 Identities=18% Similarity=0.333 Sum_probs=71.6
Q ss_pred EEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeE
Q 041271 137 YWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFK 216 (310)
Q Consensus 137 dv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~ 216 (310)
++.+++++|.|.++ ||||+++||+|++.++. |+| +|++..+. +...|+.+ .|.|+|.||.+||.+.|+
T Consensus 1 ~~~~~~~~~~v~~d-lpG~~~edI~V~v~~~~--L~I--~g~~~~~~--~~~~~~~~-----ef~R~~~LP~~vd~~~i~ 68 (83)
T cd06478 1 EVRLDKDRFSVNLD-VKHFSPEELSVKVLGDF--VEI--HGKHEERQ--DEHGFISR-----EFHRRYRLPPGVDPAAIT 68 (83)
T ss_pred CeeecCceEEEEEE-CCCCCHHHeEEEEECCE--EEE--EEEEceEc--CCCCEEEE-----EEEEEEECCCCcChHHeE
Confidence 36789999999999 99999999999999999 999 99865432 23456554 499999999999999999
Q ss_pred EEe-eeCCEEEEEEeC
Q 041271 217 TEM-EEDGVLTVTFTK 231 (310)
Q Consensus 217 A~l-~~dGvL~ItvPK 231 (310)
|.| + ||+|+|++||
T Consensus 69 A~~~~-dGvL~I~~PK 83 (83)
T cd06478 69 SSLSA-DGVLTISGPR 83 (83)
T ss_pred EEECC-CCEEEEEecC
Confidence 999 7 9999999998
No 15
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.79 E-value=5.4e-19 Score=139.16 Aligned_cols=85 Identities=28% Similarity=0.418 Sum_probs=76.9
Q ss_pred ceeeEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEec--------ccceeEEeecceEEeeeCCcccCcCCcc
Q 041271 25 ISTRWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIA--------DGGTILRRFLKVSRNFDLPDGVKRSNFK 96 (310)
Q Consensus 25 ~~~dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~--------~~~~~er~~g~f~R~~~LP~~vd~~~~~ 96 (310)
+++||+|+++.|+|.++||||+++||+|.++++.|+|+|+++.. .+...+|.+|+|.|+|.|| .++ .+.+
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~-~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVD-EEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCC-HHHC
Confidence 36999999999999999999999999999999999999998742 1345678999999999999 688 7789
Q ss_pred eeeeeCCeEEEEeec
Q 041271 97 STSMEDGVLTVTFTR 111 (310)
Q Consensus 97 ~A~~~dGvL~I~lPK 111 (310)
+|.|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999996
No 16
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.79 E-value=7e-19 Score=136.67 Aligned_cols=83 Identities=22% Similarity=0.349 Sum_probs=71.6
Q ss_pred EeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeEE
Q 041271 138 WETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKT 217 (310)
Q Consensus 138 v~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~A 217 (310)
+.+++++|.|.++ ||||+++||+|++.++. |+| +|++..+. +...|+. ++|.|+|.||.+||.+.|+|
T Consensus 2 ~~~~~~~~~v~~d-lpG~~~edi~V~v~~~~--L~I--~g~~~~~~--~~~~~~~-----~eF~R~~~LP~~vd~~~i~A 69 (84)
T cd06498 2 MRLEKDKFSVNLD-VKHFSPEELKVKVLGDF--IEI--HGKHEERQ--DEHGFIS-----REFQRKYRIPADVDPLTITS 69 (84)
T ss_pred eEeCCceEEEEEE-CCCCCHHHeEEEEECCE--EEE--EEEEccee--CCCCEEE-----EEEEEEEECCCCCChHHcEE
Confidence 5678999999999 99999999999999999 999 99865433 2345554 35999999999999999999
Q ss_pred EeeeCCEEEEEEeCC
Q 041271 218 EMEEDGVLTVTFTKP 232 (310)
Q Consensus 218 ~l~~dGvL~ItvPK~ 232 (310)
+|++||+|+|++||.
T Consensus 70 ~~~~dGvL~I~lPk~ 84 (84)
T cd06498 70 SLSPDGVLTVCGPRK 84 (84)
T ss_pred EeCCCCEEEEEEeCC
Confidence 993399999999985
No 17
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.78 E-value=1.3e-18 Score=136.05 Aligned_cols=83 Identities=17% Similarity=0.324 Sum_probs=74.0
Q ss_pred ecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeEEEe
Q 041271 140 TSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKTEM 219 (310)
Q Consensus 140 et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~A~l 219 (310)
+.++.|.|.++ ||||+++||+|+++++. |+| +|+++.+.......|. +.+|.|.|+|.||.+||.+.|+|.|
T Consensus 4 ~~~d~~~v~~d-lpG~~~edI~V~v~~~~--L~I--~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~ 75 (87)
T cd06481 4 DGKEGFSLKLD-VRGFSPEDLSVRVDGRK--LVV--TGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSL 75 (87)
T ss_pred CccceEEEEEE-CCCCChHHeEEEEECCE--EEE--EEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEe
Confidence 56789999999 99999999999999999 999 9998766555555554 3589999999999999999999999
Q ss_pred -eeCCEEEEEEeC
Q 041271 220 -EEDGVLTVTFTK 231 (310)
Q Consensus 220 -~~dGvL~ItvPK 231 (310)
+ ||+|+|++|+
T Consensus 76 ~~-dGvL~I~~P~ 87 (87)
T cd06481 76 SP-SGHLHIRAPR 87 (87)
T ss_pred CC-CceEEEEcCC
Confidence 8 9999999996
No 18
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.77 E-value=3.7e-18 Score=132.35 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=69.9
Q ss_pred EeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeEE
Q 041271 138 WETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKT 217 (310)
Q Consensus 138 v~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~A 217 (310)
+..++++|.|.++ ||||+++||+|++.++. |+| +|+++... +...|+ +++|.|+|.||.+||.+.|+|
T Consensus 2 ~~~~~d~y~v~~d-lpG~~~edi~V~v~~~~--L~I--~g~~~~~~--~~~~~~-----~~eF~R~~~LP~~vd~~~v~A 69 (83)
T cd06476 2 VESEDDKYQVFLD-VCHFTPDEITVRTVDNL--LEV--SARHPQRM--DRHGFV-----SREFTRTYILPMDVDPLLVRA 69 (83)
T ss_pred eeccCCeEEEEEE-cCCCCHHHeEEEEECCE--EEE--EEEEccee--cCCCEE-----EEEEEEEEECCCCCChhhEEE
Confidence 4567899999999 99999999999999999 999 99975432 223344 346999999999999999999
Q ss_pred EeeeCCEEEEEEeC
Q 041271 218 EMEEDGVLTVTFTK 231 (310)
Q Consensus 218 ~l~~dGvL~ItvPK 231 (310)
.|..||+|+|++||
T Consensus 70 ~~~~dGvL~I~~Pr 83 (83)
T cd06476 70 SLSHDGILCIQAPR 83 (83)
T ss_pred EecCCCEEEEEecC
Confidence 99439999999997
No 19
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.77 E-value=3.3e-18 Score=134.38 Aligned_cols=84 Identities=23% Similarity=0.307 Sum_probs=74.8
Q ss_pred ceeeEEEeC-CEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecc-----cceeEEeecceEEeeeCCcccCcCCccee
Q 041271 25 ISTRWEYDG-DKIVCKASLPAVRMEDVKIDINDKELTLTRELNIAD-----GGTILRRFLKVSRNFDLPDGVKRSNFKST 98 (310)
Q Consensus 25 ~~~dv~E~e-d~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~-----~~~~er~~g~f~R~~~LP~~vd~~~~~~A 98 (310)
|++||+|++ +.|+|.++||||+++||+|.++++.|+|+|+++... +...+|.+|+|.|+|.||.+++ . .+|
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd-~--~~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVK-V--KGA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCce-E--Cee
Confidence 579999975 999999999999999999999999999999987543 2345788999999999999999 3 489
Q ss_pred eeeCCeEEEEeec
Q 041271 99 SMEDGVLTVTFTR 111 (310)
Q Consensus 99 ~~~dGvL~I~lPK 111 (310)
.|+||+|+|++++
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 9999999999984
No 20
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.76 E-value=1.6e-18 Score=133.77 Aligned_cols=79 Identities=23% Similarity=0.347 Sum_probs=72.6
Q ss_pred eEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeee-eCCeEE
Q 041271 28 RWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSM-EDGVLT 106 (310)
Q Consensus 28 dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~-~dGvL~ 106 (310)
||.|+++.|.|.++||||+++||+|.++++.|+|+|+++.+++ +.+|+|.|+|.||.+|| .+.++|.| +||+|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~----~~~g~F~R~~~LP~~vd-~e~v~A~l~~~GvL~ 76 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDG----TVMNTFTHKCQLPEDVD-PTSVSSSLGEDGTLT 76 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCC----CEEEEEEEEEECCCCcC-HHHeEEEecCCCEEE
Confidence 6899999999999999999999999999999999999875542 36899999999999999 99999997 999999
Q ss_pred EEeec
Q 041271 107 VTFTR 111 (310)
Q Consensus 107 I~lPK 111 (310)
|++++
T Consensus 77 I~~~~ 81 (81)
T cd06479 77 IKARR 81 (81)
T ss_pred EEecC
Confidence 99874
No 21
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.76 E-value=5.4e-18 Score=132.50 Aligned_cols=82 Identities=16% Similarity=0.237 Sum_probs=71.8
Q ss_pred cCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeEEEee
Q 041271 141 SLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKTEME 220 (310)
Q Consensus 141 t~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~A~l~ 220 (310)
++++|.|.++ ||||+++||+|++.++. |+| +|+++.+++.+. .+|+++|+|.|+|.||.+||.+.|+|+|+
T Consensus 6 ~~~~~~v~ad-lPG~~kedI~V~v~~~~--L~I--~ger~~~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~ 76 (87)
T cd06482 6 DSSNVLASVD-VCGFEPDQVKVKVKDGK--VQV--SAERENRYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYG 76 (87)
T ss_pred cCCEEEEEEE-CCCCCHHHeEEEEECCE--EEE--EEEEecccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEc
Confidence 5789999999 99999999999999999 999 999876543322 24788999999999999999999999999
Q ss_pred eCCEEEEEEeC
Q 041271 221 EDGVLTVTFTK 231 (310)
Q Consensus 221 ~dGvL~ItvPK 231 (310)
.+|+|+|..|.
T Consensus 77 ~~~~l~i~~~~ 87 (87)
T cd06482 77 LGSVVKIETPC 87 (87)
T ss_pred CCCEEEEeeCC
Confidence 44599999884
No 22
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.75 E-value=7.5e-18 Score=131.44 Aligned_cols=83 Identities=17% Similarity=0.298 Sum_probs=72.3
Q ss_pred EEEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCe
Q 041271 136 IYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDF 215 (310)
Q Consensus 136 vdv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I 215 (310)
.||+|++++|.|.++ ||||+++||+|++.++. |+| +|++..++. ...|. .++|.|+|.||.+||.+.|
T Consensus 3 ~~i~e~~~~~~v~~d-lPG~~~edi~V~v~~~~--L~I--~g~~~~~~~--~~~~~-----~~~f~R~f~LP~~vd~~~v 70 (86)
T cd06475 3 SEIRQTADRWKVSLD-VNHFAPEELVVKTKDGV--VEI--TGKHEEKQD--EHGFV-----SRCFTRKYTLPPGVDPTAV 70 (86)
T ss_pred ceEEEcCCeEEEEEE-CCCCCHHHEEEEEECCE--EEE--EEEECcCcC--CCCEE-----EEEEEEEEECCCCCCHHHc
Confidence 489999999999999 99999999999999999 999 998754322 22232 4589999999999999999
Q ss_pred EEEeeeCCEEEEEEe
Q 041271 216 KTEMEEDGVLTVTFT 230 (310)
Q Consensus 216 ~A~l~~dGvL~ItvP 230 (310)
+|.|.+||+|+|++|
T Consensus 71 ~A~~~~dGvL~I~lP 85 (86)
T cd06475 71 TSSLSPDGILTVEAP 85 (86)
T ss_pred EEEECCCCeEEEEec
Confidence 999944999999998
No 23
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.75 E-value=1.2e-17 Score=128.44 Aligned_cols=88 Identities=43% Similarity=0.618 Sum_probs=80.6
Q ss_pred EEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeE
Q 041271 137 YWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFK 216 (310)
Q Consensus 137 dv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~ 216 (310)
++.++++.|.|.++ ||||++++|+|++.++. |.| +|++........ .+...|+.++.|.|+|.||..+|.+.++
T Consensus 1 ~i~e~~~~~~i~~~-lpg~~~~~i~V~v~~~~--l~I--~g~~~~~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~ 74 (88)
T cd06464 1 DVYETDDAYVVEAD-LPGFKKEDIKVEVEDGV--LTI--SGEREEEEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIK 74 (88)
T ss_pred CcEEcCCEEEEEEE-CCCCCHHHeEEEEECCE--EEE--EEEEecccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcE
Confidence 46788999999999 99999999999999999 999 999876554443 7788999999999999999999999999
Q ss_pred EEeeeCCEEEEEEeC
Q 041271 217 TEMEEDGVLTVTFTK 231 (310)
Q Consensus 217 A~l~~dGvL~ItvPK 231 (310)
|.|+ ||+|+|++||
T Consensus 75 a~~~-~G~L~I~~pk 88 (88)
T cd06464 75 ASLE-NGVLTITLPK 88 (88)
T ss_pred EEEe-CCEEEEEEcC
Confidence 9999 9999999997
No 24
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.73 E-value=1.4e-17 Score=129.93 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=72.8
Q ss_pred eeEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeee-CCeE
Q 041271 27 TRWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSME-DGVL 105 (310)
Q Consensus 27 ~dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~-dGvL 105 (310)
.||+|+++.|.|.++||||++++|+|.++++.|+|+|++...+.. .....++|.|+|.||..|| .+.++|.|. ||+|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~-~~~~~~~f~R~f~LP~~vd-~~~v~A~~~~dGvL 80 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDE-HGFVSRCFTRKYTLPPGVD-PTAVTSSLSPDGIL 80 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCC-CCEEEEEEEEEEECCCCCC-HHHcEEEECCCCeE
Confidence 589999999999999999999999999999999999998653321 1233568999999999999 899999997 9999
Q ss_pred EEEeec
Q 041271 106 TVTFTR 111 (310)
Q Consensus 106 ~I~lPK 111 (310)
+|++|.
T Consensus 81 ~I~lP~ 86 (86)
T cd06475 81 TVEAPI 86 (86)
T ss_pred EEEecC
Confidence 999983
No 25
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.73 E-value=1.6e-17 Score=129.57 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=70.9
Q ss_pred eEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecc-cceeEEeecceEEeeeCCcccCcCCcceeee-eCCeE
Q 041271 28 RWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIAD-GGTILRRFLKVSRNFDLPDGVKRSNFKSTSM-EDGVL 105 (310)
Q Consensus 28 dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~-~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~-~dGvL 105 (310)
+|.++++.|.|.++||||+++||+|.++++.|+|+|++.... ..++.+ ..|.|+|.||.+|| .+.++|.| +||+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~--~ef~R~~~LP~~Vd-~~~i~A~~~~dGvL 80 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYIS--REFHRRYRLPSNVD-QSAITCSLSADGML 80 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEE--EEEEEEEECCCCCC-hHHeEEEeCCCCEE
Confidence 689999999999999999999999999999999999975432 222322 25999999999999 88999999 89999
Q ss_pred EEEeec
Q 041271 106 TVTFTR 111 (310)
Q Consensus 106 ~I~lPK 111 (310)
+|++||
T Consensus 81 ~I~~PK 86 (86)
T cd06497 81 TFSGPK 86 (86)
T ss_pred EEEecC
Confidence 999996
No 26
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.73 E-value=3e-17 Score=127.20 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=68.9
Q ss_pred eecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeEEE
Q 041271 139 ETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKTE 218 (310)
Q Consensus 139 ~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~A~ 218 (310)
.++++.|.|.++ ||||++|||+|++.++. |+| +|++..+.. ...|. .++|.|+|.||.+||.+.|+|.
T Consensus 3 ~e~~~~~~v~~d-lpG~~~edI~V~v~~~~--L~I--~ge~~~~~~--~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~ 70 (83)
T cd06477 3 EEGKPMFQILLD-VVQFRPEDIIIQVFEGW--LLI--KGQHGVRMD--EHGFI-----SRSFTRQYQLPDGVEHKDLSAM 70 (83)
T ss_pred ccCCceEEEEEE-cCCCCHHHeEEEEECCE--EEE--EEEEccccC--CCCEE-----EEEEEEEEECCCCcchheEEEE
Confidence 478899999999 99999999999999999 999 999866432 23332 3499999999999999999999
Q ss_pred e-eeCCEEEEEEe
Q 041271 219 M-EEDGVLTVTFT 230 (310)
Q Consensus 219 l-~~dGvL~ItvP 230 (310)
| + ||+|+|+.|
T Consensus 71 ~~~-dGvL~I~~~ 82 (83)
T cd06477 71 LCH-DGILVVETK 82 (83)
T ss_pred EcC-CCEEEEEec
Confidence 8 7 999999986
No 27
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.73 E-value=1.9e-17 Score=128.02 Aligned_cols=77 Identities=27% Similarity=0.470 Sum_probs=68.1
Q ss_pred CcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeEEEeee
Q 041271 142 LDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKTEMEE 221 (310)
Q Consensus 142 ~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~A~l~~ 221 (310)
++.|.|.++ ||||+++||+|+++++. |+| +|+++.... .. ++.+++|.|+|.||.+||.+.++|+|.
T Consensus 6 ~~~~~v~~d-lpG~~~edI~v~v~~~~--L~I--~g~~~~~~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~- 72 (83)
T cd06526 6 DEKFQVTLD-VKGFKPEELKVKVSDNK--LVV--EGKHEERED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLS- 72 (83)
T ss_pred CeeEEEEEE-CCCCCHHHcEEEEECCE--EEE--EEEEeeecc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeC-
Confidence 369999999 99999999999999998 999 999876433 12 234789999999999999999999999
Q ss_pred C-CEEEEEEeC
Q 041271 222 D-GVLTVTFTK 231 (310)
Q Consensus 222 d-GvL~ItvPK 231 (310)
| |+|+|++||
T Consensus 73 ~~GvL~I~~Pk 83 (83)
T cd06526 73 SDGVLTIEAPK 83 (83)
T ss_pred CCcEEEEEecC
Confidence 7 999999997
No 28
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.72 E-value=2.3e-17 Score=128.89 Aligned_cols=78 Identities=18% Similarity=0.340 Sum_probs=70.9
Q ss_pred eCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecc--cceeEEeecceEEeeeCCcccCcCCcceeeeeCC-eEEEE
Q 041271 32 DGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIAD--GGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDG-VLTVT 108 (310)
Q Consensus 32 ~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~--~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dG-vL~I~ 108 (310)
+++.|+|.++||||+++||+|.+.++.|+|+|+++.++ ....+|++|+|.|+|.||.+|| .+.++|.|+|| +|+|.
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd-~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVD-EKDVTYSYGLGSVVKIE 84 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcC-hHHcEEEEcCCCEEEEe
Confidence 57899999999999999999999999999999987543 3455899999999999999999 89999999987 99998
Q ss_pred ee
Q 041271 109 FT 110 (310)
Q Consensus 109 lP 110 (310)
.|
T Consensus 85 ~~ 86 (87)
T cd06482 85 TP 86 (87)
T ss_pred eC
Confidence 77
No 29
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.72 E-value=2.7e-17 Score=127.48 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=70.3
Q ss_pred EEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeee-CCeEEE
Q 041271 29 WEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSME-DGVLTV 107 (310)
Q Consensus 29 v~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~-dGvL~I 107 (310)
+.-+++.|.|.++||||+++||+|.+.++.|+|+|+++.... ..++..+.|.|+|.||..|| .+.++|.|. ||+|+|
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~-~~~~~~~eF~R~~~LP~~vd-~~~v~A~~~~dGvL~I 79 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMD-RHGFVSREFTRTYILPMDVD-PLLVRASLSHDGILCI 79 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceec-CCCEEEEEEEEEEECCCCCC-hhhEEEEecCCCEEEE
Confidence 456899999999999999999999999999999999854322 22244567999999999999 999999996 999999
Q ss_pred Eeec
Q 041271 108 TFTR 111 (310)
Q Consensus 108 ~lPK 111 (310)
++|+
T Consensus 80 ~~Pr 83 (83)
T cd06476 80 QAPR 83 (83)
T ss_pred EecC
Confidence 9996
No 30
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.72 E-value=3e-17 Score=127.53 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=70.1
Q ss_pred EEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecc-cceeEEeecceEEeeeCCcccCcCCcceeeee-CCeEE
Q 041271 29 WEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIAD-GGTILRRFLKVSRNFDLPDGVKRSNFKSTSME-DGVLT 106 (310)
Q Consensus 29 v~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~-~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~-dGvL~ 106 (310)
+.++++.|.|.++||||+++||+|.++++.|+|+|++..+. ..++ ..+.|.|+|.||.+|| .+.++|.|+ ||+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~--~~~eF~R~~~LP~~vd-~~~i~A~~~~dGvL~ 78 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGF--ISREFQRKYRIPADVD-PLTITSSLSPDGVLT 78 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCE--EEEEEEEEEECCCCCC-hHHcEEEeCCCCEEE
Confidence 57889999999999999999999999999999999875432 2222 2346999999999999 999999995 99999
Q ss_pred EEeecc
Q 041271 107 VTFTRD 112 (310)
Q Consensus 107 I~lPK~ 112 (310)
|++|+.
T Consensus 79 I~lPk~ 84 (84)
T cd06498 79 VCGPRK 84 (84)
T ss_pred EEEeCC
Confidence 999974
No 31
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.72 E-value=5.6e-17 Score=129.23 Aligned_cols=89 Identities=28% Similarity=0.436 Sum_probs=73.7
Q ss_pred eEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEe-c-c--cceeEEeecceEEeeeCCcccCcCCcceeeeeCC
Q 041271 28 RWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNI-A-D--GGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDG 103 (310)
Q Consensus 28 dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~-~-~--~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dG 103 (310)
||.|+++.|.|.++||||.+++|+|.++++.|+|+|++.. . + +...++++++|.|+|.||..++ .+.++|.|+||
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd-~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVD-PDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB--GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCC-cceEEEEecCC
Confidence 7999999999999999999999999999999999999982 2 1 2345677899999999999999 89999999999
Q ss_pred eEEEEeeccccccc
Q 041271 104 VLTVTFTRDAAATA 117 (310)
Q Consensus 104 vL~I~lPK~~~a~a 117 (310)
+|+|++|+......
T Consensus 80 vL~I~~pk~~~~~~ 93 (102)
T PF00011_consen 80 VLTITIPKKEEEED 93 (102)
T ss_dssp EEEEEEEBSSSCTT
T ss_pred EEEEEEEccccccC
Confidence 99999999887654
No 32
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.71 E-value=5e-17 Score=125.92 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=69.8
Q ss_pred eEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecc-cceeEEeecceEEeeeCCcccCcCCcceeee-eCCeE
Q 041271 28 RWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIAD-GGTILRRFLKVSRNFDLPDGVKRSNFKSTSM-EDGVL 105 (310)
Q Consensus 28 dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~-~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~-~dGvL 105 (310)
++.++++.|.|.++||||+++||+|.++++.|+|+|++.... ..++.+ ..|.|+|.||.+|| .+.++|.| +||+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~--~ef~R~~~LP~~vd-~~~i~A~~~~dGvL 77 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFIS--REFHRRYRLPPGVD-PAAITSSLSADGVL 77 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEE--EEEEEEEECCCCcC-hHHeEEEECCCCEE
Confidence 367899999999999999999999999999999999875432 222322 35999999999999 88999999 69999
Q ss_pred EEEeec
Q 041271 106 TVTFTR 111 (310)
Q Consensus 106 ~I~lPK 111 (310)
+|++||
T Consensus 78 ~I~~PK 83 (83)
T cd06478 78 TISGPR 83 (83)
T ss_pred EEEecC
Confidence 999996
No 33
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.71 E-value=4.3e-17 Score=127.46 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=71.9
Q ss_pred EeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecc---cceeEEeecceEEeeeCCcccCcCCcceeee-eCCeEE
Q 041271 31 YDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIAD---GGTILRRFLKVSRNFDLPDGVKRSNFKSTSM-EDGVLT 106 (310)
Q Consensus 31 E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~---~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~-~dGvL~ 106 (310)
+.++.|.|.++||||+++||+|.++++.|+|+|++...+ ...+.+.+|+|.|+|.||..|| .+.++|.| +||+|+
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd-~~~i~A~~~~dGvL~ 82 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVD-PEAVTCSLSPSGHLH 82 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcC-hHHeEEEeCCCceEE
Confidence 568999999999999999999999999999999986432 2455678999999999999999 88999999 999999
Q ss_pred EEeec
Q 041271 107 VTFTR 111 (310)
Q Consensus 107 I~lPK 111 (310)
|++|+
T Consensus 83 I~~P~ 87 (87)
T cd06481 83 IRAPR 87 (87)
T ss_pred EEcCC
Confidence 99985
No 34
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.69 E-value=8.6e-17 Score=124.64 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=68.1
Q ss_pred EEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecc-cceeEEeecceEEeeeCCcccCcCCcceeee-eCCeEEE
Q 041271 30 EYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIAD-GGTILRRFLKVSRNFDLPDGVKRSNFKSTSM-EDGVLTV 107 (310)
Q Consensus 30 ~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~-~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~-~dGvL~I 107 (310)
.|+++.|.|.++||||+++||+|.++++.|+|+|+++.+. ..+ +..++|.|+|.||.+|+ .+.++|.| +||+|+|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~--~~~r~F~R~~~LP~~Vd-~~~v~A~~~~dGvL~I 79 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHG--FISRSFTRQYQLPDGVE-HKDLSAMLCHDGILVV 79 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCC--EEEEEEEEEEECCCCcc-hheEEEEEcCCCEEEE
Confidence 5789999999999999999999999999999999987542 222 23459999999999999 99999997 8999999
Q ss_pred Eee
Q 041271 108 TFT 110 (310)
Q Consensus 108 ~lP 110 (310)
+.+
T Consensus 80 ~~~ 82 (83)
T cd06477 80 ETK 82 (83)
T ss_pred Eec
Confidence 875
No 35
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.67 E-value=2.1e-16 Score=122.08 Aligned_cols=77 Identities=19% Similarity=0.377 Sum_probs=69.1
Q ss_pred CCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeC-CeEEEEeec
Q 041271 33 GDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMED-GVLTVTFTR 111 (310)
Q Consensus 33 ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~d-GvL~I~lPK 111 (310)
.+.|.|.++||||+++||+|.++++.|+|+|+++.... ...+.+++|.|+|.||..|| .+.++|.|.| |+|+|++||
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~-~~~~~~~~f~r~~~LP~~vd-~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEERED-EHGYVSREFTRRYQLPEGVD-PDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeecc-CCCEEEEEEEEEEECCCCCC-hHHeEEEeCCCcEEEEEecC
Confidence 36999999999999999999999999999999876543 33456789999999999999 8899999998 999999996
No 36
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.66 E-value=6.1e-16 Score=118.82 Aligned_cols=83 Identities=31% Similarity=0.474 Sum_probs=75.7
Q ss_pred eEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEeccc-----ceeEEeecceEEeeeCCcccCcCCcceeeeeC
Q 041271 28 RWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADG-----GTILRRFLKVSRNFDLPDGVKRSNFKSTSMED 102 (310)
Q Consensus 28 dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~-----~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~d 102 (310)
|+.|+++.|.+.++||||++++|+|.++++.|.|+|++..... ...++.+|.|.|+|.||..++ .+.++|.|.|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd-~~~i~a~~~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVD-PDKIKASLEN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcC-HHHcEEEEeC
Confidence 5789999999999999999999999999999999999986533 346677899999999999999 7799999999
Q ss_pred CeEEEEeec
Q 041271 103 GVLTVTFTR 111 (310)
Q Consensus 103 GvL~I~lPK 111 (310)
|+|.|++|+
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999986
No 37
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.63 E-value=1.7e-15 Score=119.29 Aligned_cols=82 Identities=13% Similarity=0.231 Sum_probs=71.4
Q ss_pred EeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeEE
Q 041271 138 WETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKT 217 (310)
Q Consensus 138 v~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~A 217 (310)
+.++++.|.|.++ +.||++|||+|++.++. |+| +|+++.+..+ . .|. .++|.|+|.||.+||.+.|+|
T Consensus 10 ~~~~~~~f~v~ld-v~gF~pEDL~Vkv~~~~--L~V--~Gkh~~~~~e-~-g~~-----~r~F~R~~~LP~~Vd~~~v~s 77 (91)
T cd06480 10 PPNSSEPWKVCVN-VHSFKPEELTVKTKDGF--VEV--SGKHEEQQKE-G-GIV-----SKNFTKKIQLPPEVDPVTVFA 77 (91)
T ss_pred CCCCCCcEEEEEE-eCCCCHHHcEEEEECCE--EEE--EEEECcccCC-C-CEE-----EEEEEEEEECCCCCCchhEEE
Confidence 3468889999999 99999999999999999 999 9998755422 2 332 478999999999999999999
Q ss_pred EeeeCCEEEEEEeC
Q 041271 218 EMEEDGVLTVTFTK 231 (310)
Q Consensus 218 ~l~~dGvL~ItvPK 231 (310)
.|.+||+|+|++|.
T Consensus 78 ~l~~dGvL~IeaP~ 91 (91)
T cd06480 78 SLSPEGLLIIEAPQ 91 (91)
T ss_pred EeCCCCeEEEEcCC
Confidence 99889999999984
No 38
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8.7e-16 Score=137.13 Aligned_cols=115 Identities=37% Similarity=0.500 Sum_probs=98.8
Q ss_pred heeeeecceEEEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccC--CCccEEEEeeecceEEEEE
Q 041271 127 KVIAFLNAVIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGD--TIPEWLLEEFTDGKIIRRF 204 (310)
Q Consensus 127 ~~~~~~~p~vdv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~--~~~~~~~~E~~~g~F~R~~ 204 (310)
.....+.+++++.++.+.|.+.++ +||+++++++|+++++. +|+| +|+++.+.+. ....|+..|+.+|.|.|+|
T Consensus 78 ~~~~~~~~~~~v~e~~~~~~~~~~-~Pgl~ke~iKv~~~~~~-~l~i--sGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~ 153 (196)
T KOG0710|consen 78 EAKSEARVPWDVKESPDAHEFKVD-LPGLKKEDIKVEVEDEK-VLTI--SGERKKEEEESGSGKKWKRVERKLGKFKRRF 153 (196)
T ss_pred cccccccCCcccccCCCceEEEee-CCCCCchhceEEeccCc-EEEE--ecccccccccccCCccceeehhcccceEeee
Confidence 334556788889999999999999 99999999999999994 5999 9999877654 5678899999999999999
Q ss_pred ECCCCcccCCeEEEeeeCCEEEEEEeCCCCC-CCCCceEEEEe
Q 041271 205 KLPADVRLDDFKTEMEEDGVLTVTFTKPIKP-KKTQQQLISKL 246 (310)
Q Consensus 205 ~LP~~vd~~~I~A~l~~dGvL~ItvPK~~~~-~~~~~r~I~I~ 246 (310)
.||++++.+.|+|.|. ||||+|++||.... +++..+.|.|.
T Consensus 154 ~lPenv~~d~ikA~~~-nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 154 ELPENVDVDEIKAEME-NGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred cCCccccHHHHHHHhh-CCeEEEEEecccccccCCccceeecc
Confidence 9999999999999999 99999999999332 45655666653
No 39
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.7e-14 Score=126.30 Aligned_cols=105 Identities=24% Similarity=0.348 Sum_probs=87.2
Q ss_pred ceEEEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccC
Q 041271 134 AVIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLD 213 (310)
Q Consensus 134 p~vdv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~ 213 (310)
...++..+++.|.+.+| +..|++|+|+|.+.++. |.| .|++...+ ++..+. .+.|.|+|.||++||++
T Consensus 63 ~~~~~~~~~~~F~V~lD-V~~F~PeEl~Vk~~~~~--l~V--~gkHeer~--d~~G~v-----~R~F~R~y~LP~~vdp~ 130 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLD-VHQFKPEELKVKTDDNT--LEV--EGKHEEKE--DEHGYV-----SRSFVRKYLLPEDVDPT 130 (173)
T ss_pred cccccccCCCcEEEEEE-cccCcccceEEEeCCCE--EEE--Eeeecccc--CCCCeE-----EEEEEEEecCCCCCChh
Confidence 45678889999999999 99999999999999999 999 88865543 222232 45899999999999999
Q ss_pred CeEEEeeeCCEEEEEEeCCCCCCCCCceEEEEecCccc
Q 041271 214 DFKTEMEEDGVLTVTFTKPIKPKKTQQQLISKLLGFLA 251 (310)
Q Consensus 214 ~I~A~l~~dGvL~ItvPK~~~~~~~~~r~I~I~~~~~~ 251 (310)
.|++.|.+||+|+|++||.+ ......|.|+|+.....
T Consensus 131 ~V~S~LS~dGvLtI~ap~~~-~~~~~er~ipI~~~~~~ 167 (173)
T KOG3591|consen 131 SVTSTLSSDGVLTIEAPKPP-PKQDNERSIPIEQVGPS 167 (173)
T ss_pred heEEeeCCCceEEEEccCCC-CcCccceEEeEeecCcc
Confidence 99999999999999999993 33335799999876443
No 40
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.51 E-value=5.3e-14 Score=110.79 Aligned_cols=80 Identities=10% Similarity=0.105 Sum_probs=67.9
Q ss_pred EEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeee-CCeEEE
Q 041271 29 WEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSME-DGVLTV 107 (310)
Q Consensus 29 v~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~-dGvL~I 107 (310)
+..+++.|.|.+++.||++|||+|.+.++.|+|+|+++..+... ....++|.|+|.||..|| .+.++|.+. ||+|+|
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~-g~~~r~F~R~~~LP~~Vd-~~~v~s~l~~dGvL~I 87 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEG-GIVSKNFTKKIQLPPEVD-PVTVFASLSPEGLLII 87 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCC-CEEEEEEEEEEECCCCCC-chhEEEEeCCCCeEEE
Confidence 34678999999999999999999999999999999988653211 233588999999999999 777777776 999999
Q ss_pred Eee
Q 041271 108 TFT 110 (310)
Q Consensus 108 ~lP 110 (310)
.+|
T Consensus 88 eaP 90 (91)
T cd06480 88 EAP 90 (91)
T ss_pred EcC
Confidence 987
No 41
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.33 E-value=1.1e-11 Score=91.70 Aligned_cols=80 Identities=43% Similarity=0.686 Sum_probs=70.1
Q ss_pred EeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeEE
Q 041271 138 WETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKT 217 (310)
Q Consensus 138 v~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~A 217 (310)
|.++++.|.|+++ +||+.+++++|.+.++. |.| +|....... .+...+.|.+.+.||..++++.++|
T Consensus 1 ~~q~~~~v~i~i~-~~~~~~~~i~v~~~~~~--l~v--~~~~~~~~~--------~~~~~~~~~~~~~L~~~i~~~~~~~ 67 (80)
T cd00298 1 WYQTDDEVVVTVD-LPGVKKEDIKVEVEDNV--LTI--SGKREEEEE--------RERSYGEFERSFELPEDVDPEKSKA 67 (80)
T ss_pred CEEcCCEEEEEEE-CCCCCHHHeEEEEECCE--EEE--EEEEcCCCc--------ceEeeeeEEEEEECCCCcCHHHCEE
Confidence 4578899999999 99999999999999999 999 887653322 3445678999999999999999999
Q ss_pred EeeeCCEEEEEEeC
Q 041271 218 EMEEDGVLTVTFTK 231 (310)
Q Consensus 218 ~l~~dGvL~ItvPK 231 (310)
.+. +|+|+|++||
T Consensus 68 ~~~-~~~l~i~l~K 80 (80)
T cd00298 68 SLE-NGVLEITLPK 80 (80)
T ss_pred EEE-CCEEEEEEcC
Confidence 999 9999999997
No 42
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.7e-12 Score=113.83 Aligned_cols=94 Identities=27% Similarity=0.409 Sum_probs=83.2
Q ss_pred CCCceeeEEEeCCEEEEEEEcCCCCCCceEEEEeCC-EEEEEEEEEecc--------cceeEEeecceEEeeeCCcccCc
Q 041271 22 SSNISTRWEYDGDKIVCKASLPAVRMEDVKIDINDK-ELTLTRELNIAD--------GGTILRRFLKVSRNFDLPDGVKR 92 (310)
Q Consensus 22 ~~~~~~dv~E~ed~y~v~vdLPGv~~edI~V~v~~~-~L~I~g~~~~~~--------~~~~er~~g~f~R~~~LP~~vd~ 92 (310)
....++++.|.++.|.+.++|||+++++++|.++++ .|+|+|++..++ +...++.+|.|.|++.||++++
T Consensus 82 ~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~- 160 (196)
T KOG0710|consen 82 EARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVD- 160 (196)
T ss_pred cccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCcccc-
Confidence 345678889999999999999999999999999777 799999987542 3456899999999999999998
Q ss_pred CCcceeeeeCCeEEEEeecccccc
Q 041271 93 SNFKSTSMEDGVLTVTFTRDAAAT 116 (310)
Q Consensus 93 ~~~~~A~~~dGvL~I~lPK~~~a~ 116 (310)
.+.++|.|+||+|.|.+|+.....
T Consensus 161 ~d~ikA~~~nGVL~VvvpK~~~~~ 184 (196)
T KOG0710|consen 161 VDEIKAEMENGVLTVVVPKLEPLL 184 (196)
T ss_pred HHHHHHHhhCCeEEEEEecccccc
Confidence 899999999999999999987754
No 43
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.25 E-value=4.3e-11 Score=88.46 Aligned_cols=80 Identities=30% Similarity=0.608 Sum_probs=71.3
Q ss_pred EEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCCeEEEE
Q 041271 29 WEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDGVLTVT 108 (310)
Q Consensus 29 v~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dGvL~I~ 108 (310)
|.++++.|.|++++||+.+++++|.++++.|.|+|.+..... .+...+.|.+.+.||..++ .+.+++.+.+|.|.|.
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~--~~~~~~~~~~~~~L~~~i~-~~~~~~~~~~~~l~i~ 77 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEE--RERSYGEFERSFELPEDVD-PEKSKASLENGVLEIT 77 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCc--ceEeeeeEEEEEECCCCcC-HHHCEEEEECCEEEEE
Confidence 578899999999999999999999999999999998764433 4455778999999999999 8899999999999999
Q ss_pred eec
Q 041271 109 FTR 111 (310)
Q Consensus 109 lPK 111 (310)
+||
T Consensus 78 l~K 80 (80)
T cd00298 78 LPK 80 (80)
T ss_pred EcC
Confidence 986
No 44
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.4e-10 Score=101.60 Aligned_cols=91 Identities=21% Similarity=0.294 Sum_probs=76.4
Q ss_pred ceeeEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEec-ccceeEEeecceEEeeeCCcccCcCCcceeeeeCC
Q 041271 25 ISTRWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIA-DGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDG 103 (310)
Q Consensus 25 ~~~dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~-~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dG 103 (310)
...++..++++|.|.+|+..|++++|.|.+.++.|.|+|++.+. +.++... ..|.|+|.||.+||.....++...||
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~--R~F~R~y~LP~~vdp~~V~S~LS~dG 140 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVS--RSFVRKYLLPEDVDPTSVTSTLSSDG 140 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEE--EEEEEEecCCCCCChhheEEeeCCCc
Confidence 45788899999999999999999999999999999999999765 3333332 35899999999999666667777899
Q ss_pred eEEEEeeccccccc
Q 041271 104 VLTVTFTRDAAATA 117 (310)
Q Consensus 104 vL~I~lPK~~~a~a 117 (310)
+|+|..|+......
T Consensus 141 vLtI~ap~~~~~~~ 154 (173)
T KOG3591|consen 141 VLTIEAPKPPPKQD 154 (173)
T ss_pred eEEEEccCCCCcCc
Confidence 99999998876543
No 45
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=98.95 E-value=4.7e-09 Score=79.37 Aligned_cols=69 Identities=23% Similarity=0.339 Sum_probs=63.2
Q ss_pred EeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeEE
Q 041271 138 WETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKT 217 (310)
Q Consensus 138 v~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~A 217 (310)
|.++++.+.|+++ +||+++++++|+++++. |.| ++ ..|.+.+.||..||++..+|
T Consensus 1 W~Qt~~~v~i~i~-~p~v~~~~v~v~~~~~~--l~i--~~--------------------~~~~~~~~l~~~I~~e~~~~ 55 (78)
T cd06469 1 WSQTDEDVKISVP-LKGVKTSKVDIFCSDLY--LKV--NF--------------------PPYLFELDLAAPIDDEKSSA 55 (78)
T ss_pred CcccCCEEEEEEE-eCCCccccceEEEecCE--EEE--cC--------------------CCEEEEEeCcccccccccEE
Confidence 3578899999999 99999999999999998 888 55 14788899999999999999
Q ss_pred EeeeCCEEEEEEeCC
Q 041271 218 EMEEDGVLTVTFTKP 232 (310)
Q Consensus 218 ~l~~dGvL~ItvPK~ 232 (310)
++. +|.|.|++||.
T Consensus 56 ~~~-~~~l~i~L~K~ 69 (78)
T cd06469 56 KIG-NGVLVFTLVKK 69 (78)
T ss_pred EEe-CCEEEEEEEeC
Confidence 999 99999999998
No 46
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=98.88 E-value=1.3e-08 Score=77.00 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=64.9
Q ss_pred EEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCCeEEEE
Q 041271 29 WEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDGVLTVT 108 (310)
Q Consensus 29 v~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dGvL~I~ 108 (310)
|.++++.+.|.+++||+++++++|.++++.|.|++ ..|.+.+.||..++ ++.+++.+.+|.|.|+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~--------------~~~~~~~~l~~~I~-~e~~~~~~~~~~l~i~ 65 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF--------------PPYLFELDLAAPID-DEKSSAKIGNGVLVFT 65 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC--------------CCEEEEEeCccccc-ccccEEEEeCCEEEEE
Confidence 56899999999999999999999999999999985 34788999999999 8899999999999999
Q ss_pred eecccc
Q 041271 109 FTRDAA 114 (310)
Q Consensus 109 lPK~~~ 114 (310)
++|...
T Consensus 66 L~K~~~ 71 (78)
T cd06469 66 LVKKEP 71 (78)
T ss_pred EEeCCC
Confidence 999754
No 47
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.65 E-value=1.5e-07 Score=82.23 Aligned_cols=78 Identities=22% Similarity=0.377 Sum_probs=62.9
Q ss_pred CceeeEEEeCC-EEEEEEEcCCCCCCc-eEEEEe--CCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceee
Q 041271 24 NISTRWEYDGD-KIVCKASLPAVRMED-VKIDIN--DKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTS 99 (310)
Q Consensus 24 ~~~~dv~E~ed-~y~v~vdLPGv~~ed-I~V~v~--~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~ 99 (310)
.+.+++.+.++ +++|.++||||++++ |+|.++ .+.|+|+. -+.|.+++.||.. + .+.++++
T Consensus 91 ~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~-------------~~~~~krv~L~~~-~-~e~~~~t 155 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRV-------------GEKYLKRVALPWP-D-PEITSAT 155 (177)
T ss_pred eeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEec-------------CCceEeeEecCCC-c-cceeeEE
Confidence 56789999888 699999999999888 888886 56677762 2346788999976 4 6788999
Q ss_pred eeCCeEEEEeecccccc
Q 041271 100 MEDGVLTVTFTRDAAAT 116 (310)
Q Consensus 100 ~~dGvL~I~lPK~~~a~ 116 (310)
|.||+|+|++-+.....
T Consensus 156 ~nNgILEIri~~~~~~~ 172 (177)
T PF05455_consen 156 FNNGILEIRIRRTEESS 172 (177)
T ss_pred EeCceEEEEEeecCCCC
Confidence 99999999998776543
No 48
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.52 E-value=8.3e-07 Score=77.60 Aligned_cols=79 Identities=20% Similarity=0.369 Sum_probs=63.3
Q ss_pred eeecceEEEeecCc-EEEEEEecCCCCCCCC-eEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECC
Q 041271 130 AFLNAVIYWETSLD-KHVLKASLLPGMKKED-VKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLP 207 (310)
Q Consensus 130 ~~~~p~vdv~et~~-~~~i~~~~lPG~~~ed-I~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP 207 (310)
....+.+++.+.++ .+.|.++ |||+++++ |+|+++.+...|+| ... +.+.+++.||
T Consensus 88 ~~~~~~vdtre~dDge~~VvAd-LPGVs~dd~idV~l~~d~~~L~i--~~~-------------------~~~~krv~L~ 145 (177)
T PF05455_consen 88 DEESIHVDTRERDDGELVVVAD-LPGVSDDDAIDVTLDDDEGALTI--RVG-------------------EKYLKRVALP 145 (177)
T ss_pred CcceeeeeeEecCCCcEEEEEe-CCCCCcccceeeEeecCCceEEE--ecC-------------------CceEeeEecC
Confidence 33457788888777 6999999 99999998 99999966633666 211 2367889999
Q ss_pred CCcccCCeEEEeeeCCEEEEEEeCC
Q 041271 208 ADVRLDDFKTEMEEDGVLTVTFTKP 232 (310)
Q Consensus 208 ~~vd~~~I~A~l~~dGvL~ItvPK~ 232 (310)
.. +.+..+++|+ ||||.|.+-+.
T Consensus 146 ~~-~~e~~~~t~n-NgILEIri~~~ 168 (177)
T PF05455_consen 146 WP-DPEITSATFN-NGILEIRIRRT 168 (177)
T ss_pred CC-ccceeeEEEe-CceEEEEEeec
Confidence 66 6888999999 99999999988
No 49
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.52 E-value=7.2e-07 Score=67.11 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=63.7
Q ss_pred eecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeEEE
Q 041271 139 ETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKTE 218 (310)
Q Consensus 139 ~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~A~ 218 (310)
.++++.+.|.+. +||..+++++|.+.++. |+| ++... . .+.|...+.|+..|+++..+++
T Consensus 2 ~Q~~~~v~i~v~-~~~~~~~~~~v~~~~~~--l~i--~~~~~-----~----------~~~~~~~~~L~~~I~~~~s~~~ 61 (84)
T cd06463 2 YQTLDEVTITIP-LKDVTKKDVKVEFTPKS--LTV--SVKGG-----G----------GKEYLLEGELFGPIDPEESKWT 61 (84)
T ss_pred cccccEEEEEEE-cCCCCccceEEEEecCE--EEE--EeeCC-----C----------CCceEEeeEccCccchhhcEEE
Confidence 568899999999 99999999999999999 999 55421 0 2357788899999999999999
Q ss_pred eeeCCEEEEEEeCC
Q 041271 219 MEEDGVLTVTFTKP 232 (310)
Q Consensus 219 l~~dGvL~ItvPK~ 232 (310)
+. +|.|.|+++|.
T Consensus 62 ~~-~~~l~i~L~K~ 74 (84)
T cd06463 62 VE-DRKIEITLKKK 74 (84)
T ss_pred Ee-CCEEEEEEEEC
Confidence 99 99999999998
No 50
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.44 E-value=1.5e-06 Score=65.31 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=66.4
Q ss_pred EEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCCeEEEE
Q 041271 29 WEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDGVLTVT 108 (310)
Q Consensus 29 v~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dGvL~I~ 108 (310)
|.++++.+.|.+.+||+.+++++|.++++.|.|++... ..+.|...+.|+..++ .+...+.+.+|.|.|.
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~---------~~~~~~~~~~L~~~I~-~~~s~~~~~~~~l~i~ 70 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGG---------GGKEYLLEGELFGPID-PEESKWTVEDRKIEIT 70 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCC---------CCCceEEeeEccCccc-hhhcEEEEeCCEEEEE
Confidence 46789999999999999999999999999999997542 1245788899999999 8889999999999999
Q ss_pred eecccc
Q 041271 109 FTRDAA 114 (310)
Q Consensus 109 lPK~~~ 114 (310)
++|...
T Consensus 71 L~K~~~ 76 (84)
T cd06463 71 LKKKEP 76 (84)
T ss_pred EEECCC
Confidence 999765
No 51
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.18 E-value=7.5e-06 Score=62.42 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=64.9
Q ss_pred EEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeE
Q 041271 137 YWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFK 216 (310)
Q Consensus 137 dv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~ 216 (310)
|+.++++.+.|.+. +||+.++++.|.++++. |.| .+... . .+.|...+.|+..|+++..+
T Consensus 1 dW~Qt~~~v~i~v~-~~~~~~~~v~v~~~~~~--l~i--~~~~~------~---------~~~~~~~~~L~~~I~~~~s~ 60 (84)
T cd06466 1 DWYQTDTSVTVTIY-AKNVDKEDVKVEFNEQS--LSV--SIILP------G---------GSEYQLELDLFGPIDPEQSK 60 (84)
T ss_pred CccccCCEEEEEEE-ECCCCHHHCEEEEecCE--EEE--EEECC------C---------CCeEEEecccccccCchhcE
Confidence 57889999999999 99999999999999999 888 54421 0 12477788999999999999
Q ss_pred EEeeeCCEEEEEEeCC
Q 041271 217 TEMEEDGVLTVTFTKP 232 (310)
Q Consensus 217 A~l~~dGvL~ItvPK~ 232 (310)
+.+. +|.|.|++.|.
T Consensus 61 ~~~~-~~~vei~L~K~ 75 (84)
T cd06466 61 VSVL-PTKVEITLKKA 75 (84)
T ss_pred EEEe-CeEEEEEEEcC
Confidence 9999 99999999998
No 52
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.13 E-value=9.2e-06 Score=61.92 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=66.8
Q ss_pred eEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCCeEEE
Q 041271 28 RWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDGVLTV 107 (310)
Q Consensus 28 dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dGvL~I 107 (310)
||+++++.+.|.+.+||+.++++.|.++++.|.|++... ..+.|...+.|...++ ++..++.+.+|.+.|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~---------~~~~~~~~~~L~~~I~-~~~s~~~~~~~~vei 70 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP---------GGSEYQLELDLFGPID-PEQSKVSVLPTKVEI 70 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECC---------CCCeEEEecccccccC-chhcEEEEeCeEEEE
Confidence 688999999999999999999999999999999986431 1225677889999999 888899999999999
Q ss_pred Eeecccc
Q 041271 108 TFTRDAA 114 (310)
Q Consensus 108 ~lPK~~~ 114 (310)
.+.|...
T Consensus 71 ~L~K~~~ 77 (84)
T cd06466 71 TLKKAEP 77 (84)
T ss_pred EEEcCCC
Confidence 9999764
No 53
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=97.87 E-value=0.00038 Score=51.73 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=61.8
Q ss_pred ceEEEeecCcEEEEEEecCCCC--CCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcc
Q 041271 134 AVIYWETSLDKHVLKASLLPGM--KKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVR 211 (310)
Q Consensus 134 p~vdv~et~~~~~i~~~~lPG~--~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd 211 (310)
|+++|.++++.+.|.+. +++. +++|++|.+.++. |.| +... . .. ..|.-.+.|...|+
T Consensus 1 ~~y~W~Qt~~~V~v~i~-~~~~~~~~~dv~v~~~~~~--l~v--~~~~--~--~~-----------~~~~~~~~L~~~I~ 60 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIP-VKPVDISKEDVKVDFTDTS--LSV--SIKS--G--DG-----------KEYLLEGELFGEID 60 (79)
T ss_dssp SSEEEEEESSEEEEEEE--TTTTSSGGGEEEEEETTE--EEE--EEEE--T--TS-----------CEEEEEEEBSS-BE
T ss_pred CCeEEEECCCEEEEEEE-EcCCCCChHHeEEEEEeeE--EEE--EEEc--c--CC-----------ceEEEEEEEeeeEc
Confidence 57899999999999999 9654 5999999999999 888 4321 1 00 14666778999999
Q ss_pred cCCeEEEeeeCCEEEEEEeC
Q 041271 212 LDDFKTEMEEDGVLTVTFTK 231 (310)
Q Consensus 212 ~~~I~A~l~~dGvL~ItvPK 231 (310)
++..+..+. ++.|.|++.|
T Consensus 61 ~~~s~~~~~-~~~i~i~L~K 79 (79)
T PF04969_consen 61 PDESTWKVK-DNKIEITLKK 79 (79)
T ss_dssp CCCEEEEEE-TTEEEEEEEB
T ss_pred chhcEEEEE-CCEEEEEEEC
Confidence 999999999 9999999987
No 54
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=97.63 E-value=0.0012 Score=48.97 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=61.7
Q ss_pred ceeeEEEeCCEEEEEEEcCCC--CCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeC
Q 041271 25 ISTRWEYDGDKIVCKASLPAV--RMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMED 102 (310)
Q Consensus 25 ~~~dv~E~ed~y~v~vdLPGv--~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~d 102 (310)
|+.+|.++++...|.+.+++. ++++++|.++++.|.|+.....+ ..|.-.+.|...++ ++.....+.+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~---------~~~~~~~~L~~~I~-~~~s~~~~~~ 70 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDG---------KEYLLEGELFGEID-PDESTWKVKD 70 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTS---------CEEEEEEEBSS-BE-CCCEEEEEET
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCC---------ceEEEEEEEeeeEc-chhcEEEEEC
Confidence 568999999999999999665 49999999999999999543111 23566778999999 8888999999
Q ss_pred CeEEEEeec
Q 041271 103 GVLTVTFTR 111 (310)
Q Consensus 103 GvL~I~lPK 111 (310)
+.|.|.+.|
T Consensus 71 ~~i~i~L~K 79 (79)
T PF04969_consen 71 NKIEITLKK 79 (79)
T ss_dssp TEEEEEEEB
T ss_pred CEEEEEEEC
Confidence 999998875
No 55
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.22 E-value=0.0036 Score=50.32 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=64.3
Q ss_pred ceEEEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccC
Q 041271 134 AVIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLD 213 (310)
Q Consensus 134 p~vdv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~ 213 (310)
|++++..+.+.+.|++. +||+ ++++|.+..+. |.| ++... ..+. .|.-.+.|...|+++
T Consensus 1 p~~~W~Qt~~~V~i~i~-~~~~--~~~~V~~~~~~--l~v--~~~~~----~~~~----------~y~~~~~L~~~I~pe 59 (108)
T cd06465 1 PPVLWAQRSDVVYLTIE-LPDA--KDPKIKLEPTS--LSF--KAKGG----GGGK----------KYEFDLEFYKEIDPE 59 (108)
T ss_pred CceeeeECCCEEEEEEE-eCCC--CCcEEEEECCE--EEE--EEEcC----CCCe----------eEEEEeEhhhhcccc
Confidence 57899999999999999 9998 99999999999 999 55321 0111 255567899999999
Q ss_pred CeEEEeeeCCEEEEEEeCC
Q 041271 214 DFKTEMEEDGVLTVTFTKP 232 (310)
Q Consensus 214 ~I~A~l~~dGvL~ItvPK~ 232 (310)
.-+.++. ++.|.|++.|.
T Consensus 60 ~s~~~v~-~~kveI~L~K~ 77 (108)
T cd06465 60 ESKYKVT-GRQIEFVLRKK 77 (108)
T ss_pred ccEEEec-CCeEEEEEEEC
Confidence 9999999 89999999998
No 56
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.17 E-value=0.0018 Score=61.52 Aligned_cols=65 Identities=25% Similarity=0.433 Sum_probs=56.8
Q ss_pred CCEEEEEEEcCCC-CCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeee--CCeEEEEe
Q 041271 33 GDKIVCKASLPAV-RMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSME--DGVLTVTF 109 (310)
Q Consensus 33 ed~y~v~vdLPGv-~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~--dGvL~I~l 109 (310)
.+.++|+++|||+ +..+|.+++.+..|.|.... ..|.-.+.||..|+ .+..+|.|. .+.|+|++
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~------------~~y~L~l~LP~~V~-~~~~~Akf~~~~~~L~vtl 326 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSEDRLSLSSPK------------PKYRLDLPLPYPVD-EDNGKAKFDKKTKTLTVTL 326 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCCEEEEEeCC------------CceEEEccCCCccc-CCCceEEEccCCCEEEEEE
Confidence 5889999999999 78999999999999999422 14678899999999 888999996 58999999
Q ss_pred e
Q 041271 110 T 110 (310)
Q Consensus 110 P 110 (310)
|
T Consensus 327 p 327 (328)
T PF08190_consen 327 P 327 (328)
T ss_pred E
Confidence 8
No 57
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.16 E-value=0.0049 Score=49.54 Aligned_cols=78 Identities=13% Similarity=0.205 Sum_probs=64.9
Q ss_pred ceeeEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCCe
Q 041271 25 ISTRWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDGV 104 (310)
Q Consensus 25 ~~~dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dGv 104 (310)
|+++|+.+++...|.+.+||+ ++++|.+..+.|.|++.... + ...|.-.+.|...++ ++..+..+.++.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~--~------~~~y~~~~~L~~~I~-pe~s~~~v~~~k 69 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGG--G------GKKYEFDLEFYKEID-PEESKYKVTGRQ 69 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCC--C------CeeEEEEeEhhhhcc-ccccEEEecCCe
Confidence 468999999999999999998 88999999999999974310 0 112456678999999 888889999999
Q ss_pred EEEEeeccc
Q 041271 105 LTVTFTRDA 113 (310)
Q Consensus 105 L~I~lPK~~ 113 (310)
+.|++.|..
T Consensus 70 veI~L~K~~ 78 (108)
T cd06465 70 IEFVLRKKE 78 (108)
T ss_pred EEEEEEECC
Confidence 999999976
No 58
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.10 E-value=0.0025 Score=60.60 Aligned_cols=66 Identities=26% Similarity=0.426 Sum_probs=55.0
Q ss_pred CcEEEEEEecCCCC-CCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeEEEee
Q 041271 142 LDKHVLKASLLPGM-KKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKTEME 220 (310)
Q Consensus 142 ~~~~~i~~~~lPG~-~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~A~l~ 220 (310)
.+.+.|+++ |||+ +..+|++.|.+.. |.| ..... .|+-.+.||..||.+..+|+|.
T Consensus 260 p~~lvv~i~-LP~~~s~~~i~LdV~~~~--l~l--~~~~~------------------~y~L~l~LP~~V~~~~~~Akf~ 316 (328)
T PF08190_consen 260 PEELVVEIE-LPGVESASDIDLDVSEDR--LSL--SSPKP------------------KYRLDLPLPYPVDEDNGKAKFD 316 (328)
T ss_pred CceEEEEEE-CCCcCccceeEEEEeCCE--EEE--EeCCC------------------ceEEEccCCCcccCCCceEEEc
Confidence 578899999 9999 7899999999999 888 33210 2455689999999999999995
Q ss_pred -eCCEEEEEEe
Q 041271 221 -EDGVLTVTFT 230 (310)
Q Consensus 221 -~dGvL~ItvP 230 (310)
..++|+||+|
T Consensus 317 ~~~~~L~vtlp 327 (328)
T PF08190_consen 317 KKTKTLTVTLP 327 (328)
T ss_pred cCCCEEEEEEE
Confidence 1499999998
No 59
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=96.96 E-value=0.0052 Score=47.01 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=61.8
Q ss_pred EEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeE
Q 041271 137 YWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFK 216 (310)
Q Consensus 137 dv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~ 216 (310)
||+++++.+.|++. ++|+.++++.|+++++. |.+ ++... .+. .|.-.+.|...|+++..+
T Consensus 1 dW~Q~~~~V~iti~-~k~~~~~~~~v~~~~~~--l~~--~~~~~-----~~~----------~y~~~~~L~~~I~p~~s~ 60 (84)
T cd06489 1 DWYQTESQVVITIL-IKNVKPEDVSVEFEKRE--LSA--TVKLP-----SGN----------DYSLKLHLLHPIVPEQSS 60 (84)
T ss_pred CccccCCEEEEEEE-ECCCCHHHCEEEEeCCE--EEE--EEECC-----CCC----------cEEEeeecCceecchhcE
Confidence 57889999999999 99999999999999999 988 54421 111 244457888999999888
Q ss_pred EEeeeCCEEEEEEeCC
Q 041271 217 TEMEEDGVLTVTFTKP 232 (310)
Q Consensus 217 A~l~~dGvL~ItvPK~ 232 (310)
.... .+-+.|++.|.
T Consensus 61 ~~v~-~~kiei~L~K~ 75 (84)
T cd06489 61 YKIL-STKIEIKLKKT 75 (84)
T ss_pred EEEe-CcEEEEEEEcC
Confidence 8888 88899999998
No 60
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=96.95 E-value=0.005 Score=47.12 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=62.8
Q ss_pred eEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCCeEEE
Q 041271 28 RWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDGVLTV 107 (310)
Q Consensus 28 dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dGvL~I 107 (310)
||+.+++...|.+.++|+.++++.|.+.++.|.+++... ++ ..|.-.++|-..++ ++..+.....+-+.|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~--~~-------~~y~~~~~L~~~I~-p~~s~~~v~~~kiei 70 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLP--SG-------NDYSLKLHLLHPIV-PEQSSYKILSTKIEI 70 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECC--CC-------CcEEEeeecCceec-chhcEEEEeCcEEEE
Confidence 688999999999999999999999999999999996541 00 13556678888888 777778888888999
Q ss_pred Eeeccc
Q 041271 108 TFTRDA 113 (310)
Q Consensus 108 ~lPK~~ 113 (310)
.+.|..
T Consensus 71 ~L~K~~ 76 (84)
T cd06489 71 KLKKTE 76 (84)
T ss_pred EEEcCC
Confidence 999864
No 61
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=96.70 E-value=0.015 Score=44.27 Aligned_cols=72 Identities=33% Similarity=0.480 Sum_probs=58.2
Q ss_pred EEeecCcEEEEEEecCC-CCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCe
Q 041271 137 YWETSLDKHVLKASLLP-GMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDF 215 (310)
Q Consensus 137 dv~et~~~~~i~~~~lP-G~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I 215 (310)
++.++++...|++. +| ++.++|++|++.++. |.| +... ..+ .-.-.|...|+++..
T Consensus 2 ~W~Qt~~~V~i~i~-~~~~~~~~dv~v~~~~~~--l~v--~~~~--------~~~----------~l~~~L~~~I~~~~s 58 (85)
T cd06467 2 SWTQTLDEVTVTIP-LPEGTKSKDVKVEITPKH--LKV--GVKG--------GEP----------LLDGELYAKVKVDES 58 (85)
T ss_pred EEEeeCCEEEEEEE-CCCCCcceeEEEEEEcCE--EEE--EECC--------CCc----------eEcCcccCceeEcCC
Confidence 57889999999999 87 799999999999999 888 4321 111 112358889999998
Q ss_pred EEEeeeC-CEEEEEEeCC
Q 041271 216 KTEMEED-GVLTVTFTKP 232 (310)
Q Consensus 216 ~A~l~~d-GvL~ItvPK~ 232 (310)
+-.+. + ..|.|+++|.
T Consensus 59 ~w~~~-~~~~v~i~L~K~ 75 (85)
T cd06467 59 TWTLE-DGKLLEITLEKR 75 (85)
T ss_pred EEEEe-CCCEEEEEEEEC
Confidence 88899 8 9999999998
No 62
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=96.50 E-value=0.032 Score=42.36 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=58.9
Q ss_pred eEEEeCCEEEEEEEcC-CCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeC-CeE
Q 041271 28 RWEYDGDKIVCKASLP-AVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMED-GVL 105 (310)
Q Consensus 28 dv~E~ed~y~v~vdLP-Gv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~d-GvL 105 (310)
+|.++++...|.+.+| +++++|++|.+..+.|.|+... +.+.-...|...++ ++...-.+.+ ..+
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~------------~~~~l~~~L~~~I~-~~~s~w~~~~~~~v 68 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG------------GEPLLDGELYAKVK-VDESTWTLEDGKLL 68 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC------------CCceEcCcccCcee-EcCCEEEEeCCCEE
Confidence 5889999999999997 6899999999999999998531 11122335788888 6666677888 899
Q ss_pred EEEeecccc
Q 041271 106 TVTFTRDAA 114 (310)
Q Consensus 106 ~I~lPK~~~ 114 (310)
.+++.|...
T Consensus 69 ~i~L~K~~~ 77 (85)
T cd06467 69 EITLEKRNE 77 (85)
T ss_pred EEEEEECCC
Confidence 999999765
No 63
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=96.45 E-value=0.031 Score=43.25 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=64.8
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCCeE
Q 041271 26 STRWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDGVL 105 (310)
Q Consensus 26 ~~dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dGvL 105 (310)
+.||+.+++..+|.+.+.|+.++++++.++.+.|.|+..-.. .-.|.-.+.|-..++ ++..+......-+
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~---------~~~y~~~l~L~~~I~-~~~s~~~v~~~kv 71 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEG---------NKEFQLDIELWGVID-VEKSSVNMLPTKV 71 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCC---------CceEEEEeeccceEC-hhHcEEEecCcEE
Confidence 579999999999999999999999999999999988753310 013566778889999 7777778888999
Q ss_pred EEEeecccc
Q 041271 106 TVTFTRDAA 114 (310)
Q Consensus 106 ~I~lPK~~~ 114 (310)
.|.+.|...
T Consensus 72 ei~L~K~~~ 80 (87)
T cd06488 72 EIKLRKAEP 80 (87)
T ss_pred EEEEEeCCC
Confidence 999998754
No 64
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=96.34 E-value=0.038 Score=42.76 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=63.5
Q ss_pred eEEEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCC
Q 041271 135 VIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDD 214 (310)
Q Consensus 135 ~vdv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~ 214 (310)
+.||+.+++.+.|.+. +.|+.++++.+.++++. |.| +.... . +. .|.-.+.|-..|+++.
T Consensus 2 R~dW~Qs~~~V~ItI~-~k~~~~~~~~v~~~~~~--l~v--~~~~~--~---~~----------~y~~~l~L~~~I~~~~ 61 (87)
T cd06488 2 RHDWHQTGSHVVVSVY-AKNSNPELSVVEANSTV--LTI--HIVFE--G---NK----------EFQLDIELWGVIDVEK 61 (87)
T ss_pred CccEeeCCCEEEEEEE-ECcCCccceEEEecCCE--EEE--EEECC--C---Cc----------eEEEEeeccceEChhH
Confidence 4789999999999999 99999999999999988 888 43211 0 11 3555678889999999
Q ss_pred eEEEeeeCCEEEEEEeCC
Q 041271 215 FKTEMEEDGVLTVTFTKP 232 (310)
Q Consensus 215 I~A~l~~dGvL~ItvPK~ 232 (310)
.+-... .+-+.|++.|.
T Consensus 62 s~~~v~-~~kvei~L~K~ 78 (87)
T cd06488 62 SSVNML-PTKVEIKLRKA 78 (87)
T ss_pred cEEEec-CcEEEEEEEeC
Confidence 888888 89999999998
No 65
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=96.34 E-value=0.036 Score=42.60 Aligned_cols=72 Identities=22% Similarity=0.418 Sum_probs=56.7
Q ss_pred EEeecCcEEEEEEecCC-CCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCe
Q 041271 137 YWETSLDKHVLKASLLP-GMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDF 215 (310)
Q Consensus 137 dv~et~~~~~i~~~~lP-G~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I 215 (310)
++.++.+...|.+. +| |++++|++|.+..+. |.| ... .. . .+ -.-.|...|+++.-
T Consensus 2 ~W~Qt~~~V~v~i~-~p~~~~~~dv~v~~~~~~--l~v--~~~--~~-----~----------~~-~~g~L~~~I~~d~S 58 (85)
T cd06493 2 YWQQTEEDLTLTIR-LPEDTTKEDIRIKFLPDH--ISI--ALK--DQ-----A----------PL-LEGKLYSSIDHESS 58 (85)
T ss_pred ccEEeCCEEEEEEE-CCCCCChhhEEEEEecCE--EEE--EeC--CC-----C----------eE-EeCcccCcccccCc
Confidence 57889999999999 96 999999999999999 888 431 00 0 11 12368888999997
Q ss_pred EEEeeeCC-EEEEEEeCC
Q 041271 216 KTEMEEDG-VLTVTFTKP 232 (310)
Q Consensus 216 ~A~l~~dG-vL~ItvPK~ 232 (310)
+=.+. +| .|.|++.|.
T Consensus 59 tw~i~-~~~~l~i~L~K~ 75 (85)
T cd06493 59 TWIIK-ENKSLEVSLIKK 75 (85)
T ss_pred EEEEe-CCCEEEEEEEEC
Confidence 77777 77 799999998
No 66
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=96.34 E-value=0.054 Score=41.93 Aligned_cols=77 Identities=12% Similarity=0.217 Sum_probs=61.8
Q ss_pred eEEEeecCcEEEEEEecCCCCCC---CCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEE-CCCCc
Q 041271 135 VIYWETSLDKHVLKASLLPGMKK---EDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFK-LPADV 210 (310)
Q Consensus 135 ~vdv~et~~~~~i~~~~lPG~~~---edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~-LP~~v 210 (310)
..++.++++.+.|.+. +|+..+ ++++|++..+. |.| ++.. .++. .|.-.+. |-..|
T Consensus 3 ~y~W~Qt~~~V~i~i~-~~~~~~~~~~~v~v~~~~~~--l~v--~~~~-----~~~~----------~~~~~~~~L~~~I 62 (92)
T cd06468 3 KYAWDQSDKFVKIYIT-LKGVHQLPKENIQVEFTERS--FEL--KVHD-----LNGK----------NYRFTINRLLKKI 62 (92)
T ss_pred eeeeecCCCEEEEEEE-ccCCCcCCcccEEEEecCCE--EEE--EEEC-----CCCc----------EEEEEehHhhCcc
Confidence 4689999999999999 999887 99999999999 888 5531 1111 2333343 88899
Q ss_pred ccCCeEEEeeeCCEEEEEEeCC
Q 041271 211 RLDDFKTEMEEDGVLTVTFTKP 232 (310)
Q Consensus 211 d~~~I~A~l~~dGvL~ItvPK~ 232 (310)
+++..+..+. .+-+.|++.|.
T Consensus 63 ~~e~s~~~~~-~~ki~i~L~K~ 83 (92)
T cd06468 63 DPEKSSFKVK-TDRIVITLAKK 83 (92)
T ss_pred CccccEEEEe-CCEEEEEEEeC
Confidence 9999999999 89999999998
No 67
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.03 E-value=0.069 Score=42.17 Aligned_cols=75 Identities=24% Similarity=0.401 Sum_probs=58.8
Q ss_pred cceEEEeecCcEEEEEEecCC-CCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcc
Q 041271 133 NAVIYWETSLDKHVLKASLLP-GMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVR 211 (310)
Q Consensus 133 ~p~vdv~et~~~~~i~~~~lP-G~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd 211 (310)
.+...+..+.+.+.|++. +| |.+++|++|.+..+. |.|.+.|+ .+ -.| .|...|+
T Consensus 5 ~~~y~W~QT~~eV~v~i~-lp~~~~~kdv~V~i~~~~--l~V~~~g~----------~~-----l~G------~L~~~I~ 60 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVN-VPPGTRAKDVKCKLGSRD--ISLAVKGQ----------EV-----LKG------KLFDSVV 60 (93)
T ss_pred CCCcEEEeEcCEEEEEEE-CCCCCceeeEEEEEEcCE--EEEEECCE----------EE-----EcC------cccCccC
Confidence 466789999999999998 76 999999999999999 88821111 01 122 4677888
Q ss_pred cCCeEEEeeeCCE-EEEEEeCC
Q 041271 212 LDDFKTEMEEDGV-LTVTFTKP 232 (310)
Q Consensus 212 ~~~I~A~l~~dGv-L~ItvPK~ 232 (310)
++.-.=.++ +|- |.|.+.|.
T Consensus 61 ~destWtle-d~k~l~I~L~K~ 81 (93)
T cd06494 61 ADECTWTLE-DRKLIRIVLTKS 81 (93)
T ss_pred cccCEEEEE-CCcEEEEEEEeC
Confidence 888777888 765 89999998
No 68
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=96.03 E-value=0.092 Score=40.31 Aligned_cols=74 Identities=12% Similarity=0.234 Sum_probs=55.9
Q ss_pred eEEEeCCEEEEEEEcC-CCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCC-eE
Q 041271 28 RWEYDGDKIVCKASLP-AVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDG-VL 105 (310)
Q Consensus 28 dv~E~ed~y~v~vdLP-Gv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dG-vL 105 (310)
+|..+++...|.+.+| |++++|++|.+..+.|.|.... + ...-.-.|...++ .+...-..++| .|
T Consensus 2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~----~--------~~~~~g~L~~~I~-~d~Stw~i~~~~~l 68 (85)
T cd06493 2 YWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKD----Q--------APLLEGKLYSSID-HESSTWIIKENKSL 68 (85)
T ss_pred ccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCC----C--------CeEEeCcccCccc-ccCcEEEEeCCCEE
Confidence 5889999999999996 9999999999999999997410 0 0112336778888 65655555666 69
Q ss_pred EEEeecccc
Q 041271 106 TVTFTRDAA 114 (310)
Q Consensus 106 ~I~lPK~~~ 114 (310)
.|.+.|...
T Consensus 69 ~i~L~K~~~ 77 (85)
T cd06493 69 EVSLIKKDE 77 (85)
T ss_pred EEEEEECCC
Confidence 999998764
No 69
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=95.85 E-value=0.11 Score=40.20 Aligned_cols=79 Identities=11% Similarity=0.265 Sum_probs=61.7
Q ss_pred eeeEEEeCCEEEEEEEcCCCCC---CceEEEEeCCEEEEEEEEEecccceeEEeecceEEeee-CCcccCcCCcceeeee
Q 041271 26 STRWEYDGDKIVCKASLPAVRM---EDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFD-LPDGVKRSNFKSTSME 101 (310)
Q Consensus 26 ~~dv~E~ed~y~v~vdLPGv~~---edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~-LP~~vd~~~~~~A~~~ 101 (310)
..+|.++++...|.+.+|+..+ ++++|.++.+.|.|.+... ++. .|.-.+. |-..++ ++..+....
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~--~~~-------~~~~~~~~L~~~I~-~e~s~~~~~ 72 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDL--NGK-------NYRFTINRLLKKID-PEKSSFKVK 72 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECC--CCc-------EEEEEehHhhCccC-ccccEEEEe
Confidence 4689999999999999999976 9999999999999996321 111 1233443 778888 777778888
Q ss_pred CCeEEEEeecccc
Q 041271 102 DGVLTVTFTRDAA 114 (310)
Q Consensus 102 dGvL~I~lPK~~~ 114 (310)
.+-+.|.+.|...
T Consensus 73 ~~ki~i~L~K~~~ 85 (92)
T cd06468 73 TDRIVITLAKKKE 85 (92)
T ss_pred CCEEEEEEEeCCC
Confidence 8889999988764
No 70
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=94.52 E-value=0.54 Score=37.06 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=57.5
Q ss_pred CceeeEEEeCCEEEEEEEcC-CCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeC
Q 041271 24 NISTRWEYDGDKIVCKASLP-AVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMED 102 (310)
Q Consensus 24 ~~~~dv~E~ed~y~v~vdLP-Gv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~d 102 (310)
....+|..+.+...|++.+| |+++.|+.|.+..+.|.|.-+- .+.-.| .|...|+ .+...=.+++
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g-------~~~l~G------~L~~~I~-~destWtled 70 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKG-------QEVLKG------KLFDSVV-ADECTWTLED 70 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECC-------EEEEcC------cccCccC-cccCEEEEEC
Confidence 34567999999999999888 7999999999999999998311 111123 4666777 5555556777
Q ss_pred Ce-EEEEeecccc
Q 041271 103 GV-LTVTFTRDAA 114 (310)
Q Consensus 103 Gv-L~I~lPK~~~ 114 (310)
|- |.|.+.|...
T Consensus 71 ~k~l~I~L~K~~~ 83 (93)
T cd06494 71 RKLIRIVLTKSNR 83 (93)
T ss_pred CcEEEEEEEeCCC
Confidence 75 8999998754
No 71
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=94.02 E-value=0.81 Score=36.94 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=57.2
Q ss_pred ceeeEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCCe
Q 041271 25 ISTRWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDGV 104 (310)
Q Consensus 25 ~~~dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dGv 104 (310)
|+++|..+.+...|++++|+ .+|++|.++.+.|+++|... ++.. |.-.+.|=..++ ++..+.....--
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~--~g~~-------y~~~l~l~~~I~-pe~Sk~~v~~r~ 69 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNG--DNVK-------IYNEIELYDRVD-PNDSKHKRTDRS 69 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECC--CCcE-------EEEEEEeecccC-cccCeEEeCCce
Confidence 67999999999999999998 58999999999999998331 1111 233456666777 555555555666
Q ss_pred EEEEeecccc
Q 041271 105 LTVTFTRDAA 114 (310)
Q Consensus 105 L~I~lPK~~~ 114 (310)
+.+.+.|...
T Consensus 70 ve~~L~K~~~ 79 (106)
T cd00237 70 ILCCLRKGKE 79 (106)
T ss_pred EEEEEEeCCC
Confidence 7777877753
No 72
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=93.96 E-value=0.81 Score=36.94 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=56.9
Q ss_pred ceEEEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccC
Q 041271 134 AVIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLD 213 (310)
Q Consensus 134 p~vdv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~ 213 (310)
|.+++.++.+.+.|++. +|+ .+|++|+++++. |.+ +|... ++.. +.-.+.|=..|+++
T Consensus 2 p~v~WaQr~~~V~ltI~-v~d--~~d~~v~l~~~~--l~f--~~~~~-----~g~~----------y~~~l~l~~~I~pe 59 (106)
T cd00237 2 AKTLWYDRRDYVFIEFC-VED--SKDVKVDFEKSK--LTF--SCLNG-----DNVK----------IYNEIELYDRVDPN 59 (106)
T ss_pred CcceeeECCCEEEEEEE-eCC--CCCcEEEEecCE--EEE--EEECC-----CCcE----------EEEEEEeecccCcc
Confidence 67899999999999999 999 589999999999 999 76321 1121 22345666778888
Q ss_pred CeEEEeeeCCEEEEEEeCC
Q 041271 214 DFKTEMEEDGVLTVTFTKP 232 (310)
Q Consensus 214 ~I~A~l~~dGvL~ItvPK~ 232 (310)
.-+-... .--+.|.+.|.
T Consensus 60 ~Sk~~v~-~r~ve~~L~K~ 77 (106)
T cd00237 60 DSKHKRT-DRSILCCLRKG 77 (106)
T ss_pred cCeEEeC-CceEEEEEEeC
Confidence 7666665 55677788887
No 73
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=93.29 E-value=0.28 Score=43.31 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=58.9
Q ss_pred cceEEEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCccc
Q 041271 133 NAVIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRL 212 (310)
Q Consensus 133 ~p~vdv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~ 212 (310)
.++.|++++....+|++. .+|+.++|+.|++.++. |.| ..+.+. +. .|.-...|-..|.+
T Consensus 3 k~r~DwyQt~~~vvIti~-~k~v~~~~v~v~~s~~~--l~~----~~~~~~---g~----------~~~l~~~L~~~I~p 62 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIF-AKNVPKEDVNVEISENT--LSI----VIQLPS---GS----------EYNLQLKLYHEIIP 62 (196)
T ss_pred cccceeecCCceEEEEEE-ecCCCccceeEEeecce--EEE----EEecCC---ch----------hhhhhHHhcccccc
Confidence 467899999999999999 99999999999999998 887 322221 11 13323346677777
Q ss_pred CCeEEEeeeCCEEEEEEeCC
Q 041271 213 DDFKTEMEEDGVLTVTFTKP 232 (310)
Q Consensus 213 ~~I~A~l~~dGvL~ItvPK~ 232 (310)
+..+-+.- ---+.|+++|.
T Consensus 63 e~~s~k~~-stKVEI~L~K~ 81 (196)
T KOG1309|consen 63 EKSSFKVF-STKVEITLAKA 81 (196)
T ss_pred cceeeEee-eeeEEEEeccc
Confidence 77666665 56778999996
No 74
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.04 E-value=0.45 Score=46.21 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=64.4
Q ss_pred cceEEEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCccc
Q 041271 133 NAVIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRL 212 (310)
Q Consensus 133 ~p~vdv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~ 212 (310)
.++.||+.+++.+.|.+. +.|+.++++.|++.++. |.| +... . .+. .|...+.|-..|++
T Consensus 156 ~~r~dWyQs~~~V~i~i~-~k~~~~~~~~v~~~~~~--l~v--~~~~--~---~~~----------~y~~~~~L~~~I~p 215 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVF-AKGVPAENVNVDFGEQI--LSV--VIEV--P---GED----------AYHLQPRLFGKIIP 215 (356)
T ss_pred ccccceeecCCEEEEEEE-ecCCChHHcEEEeecCE--EEE--EEec--C---CCc----------ceeecccccccccc
Confidence 478999999999999999 99999999999999999 888 4321 1 111 24445788899999
Q ss_pred CCeEEEeeeCCEEEEEEeCC
Q 041271 213 DDFKTEMEEDGVLTVTFTKP 232 (310)
Q Consensus 213 ~~I~A~l~~dGvL~ItvPK~ 232 (310)
+..+..+. .--+.|++.|.
T Consensus 216 ~~s~~~v~-~~Kiei~l~K~ 234 (356)
T PLN03088 216 DKCKYEVL-STKIEIRLAKA 234 (356)
T ss_pred cccEEEEe-cceEEEEEecC
Confidence 99888888 67899999998
No 75
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.91 E-value=0.48 Score=46.03 Aligned_cols=81 Identities=10% Similarity=0.113 Sum_probs=63.4
Q ss_pred CceeeEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCC
Q 041271 24 NISTRWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDG 103 (310)
Q Consensus 24 ~~~~dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dG 103 (310)
.++.||+.+++..+|.|-+.|+.++++.|.+.++.|.|+-... .+ -.|.-.+.|=..|+ ++..+....--
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~--~~-------~~y~~~~~L~~~I~-p~~s~~~v~~~ 225 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVP--GE-------DAYHLQPRLFGKII-PDKCKYEVLST 225 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecC--CC-------cceeeccccccccc-ccccEEEEecc
Confidence 3679999999999999999999999999999999999985321 00 13455577888888 77777777666
Q ss_pred eEEEEeecccc
Q 041271 104 VLTVTFTRDAA 114 (310)
Q Consensus 104 vL~I~lPK~~~ 114 (310)
-+.|.|.|...
T Consensus 226 Kiei~l~K~~~ 236 (356)
T PLN03088 226 KIEIRLAKAEP 236 (356)
T ss_pred eEEEEEecCCC
Confidence 78888887653
No 76
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=92.83 E-value=0.37 Score=42.61 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=54.0
Q ss_pred CceeeEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCC
Q 041271 24 NISTRWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDG 103 (310)
Q Consensus 24 ~~~~dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dG 103 (310)
.++.||++++...+|.+-.+|+.++|+.|.+.++.|.|..+-..++ .|.-...|=..+. ++..+...---
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~---------~~~l~~~L~~~I~-pe~~s~k~~st 72 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGS---------EYNLQLKLYHEII-PEKSSFKVFST 72 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCch---------hhhhhHHhccccc-ccceeeEeeee
Confidence 4678999999999999999999999999999999999985543211 1222222334444 44444444444
Q ss_pred eEEEEeecc
Q 041271 104 VLTVTFTRD 112 (310)
Q Consensus 104 vL~I~lPK~ 112 (310)
-+.|+++|.
T Consensus 73 KVEI~L~K~ 81 (196)
T KOG1309|consen 73 KVEITLAKA 81 (196)
T ss_pred eEEEEeccc
Confidence 456666664
No 77
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=90.98 E-value=1.9 Score=33.35 Aligned_cols=71 Identities=30% Similarity=0.483 Sum_probs=51.9
Q ss_pred EeecCcEEEEEEecCC-C--CCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCC
Q 041271 138 WETSLDKHVLKASLLP-G--MKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDD 214 (310)
Q Consensus 138 v~et~~~~~i~~~~lP-G--~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~ 214 (310)
+..+.++..|++. +| | +++.|++|.+..+. |.|.+.|+ .... .| .|...|+++.
T Consensus 3 W~QT~~ev~v~v~-l~~~~~~~~kdv~v~i~~~~--l~v~~~g~----------~~~i----~G------~L~~~V~~de 59 (87)
T cd06492 3 WTQTLSEVELKVP-FKVSFRLKGKDVVVDIQRKH--LKVGLKGQ----------PPII----DG------ELYNEVKVEE 59 (87)
T ss_pred cEeecCEEEEEEE-CCCCCCccceEEEEEEecCE--EEEEECCC----------ceEE----eC------cccCcccccc
Confidence 4567788899998 75 3 89999999999999 88811111 1111 12 4667788887
Q ss_pred eEEEeeeCC-EEEEEEeCC
Q 041271 215 FKTEMEEDG-VLTVTFTKP 232 (310)
Q Consensus 215 I~A~l~~dG-vL~ItvPK~ 232 (310)
-.=.++ +| .|.|++-|.
T Consensus 60 s~Wtle-d~~~l~i~L~K~ 77 (87)
T cd06492 60 SSWLIE-DGKVVTVNLEKI 77 (87)
T ss_pred cEEEEe-CCCEEEEEEEEC
Confidence 777788 86 899999998
No 78
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=90.41 E-value=2.2 Score=34.30 Aligned_cols=79 Identities=11% Similarity=0.339 Sum_probs=56.9
Q ss_pred cceEEEeecCcEEEEEEecCC-C-CCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCc
Q 041271 133 NAVIYWETSLDKHVLKASLLP-G-MKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADV 210 (310)
Q Consensus 133 ~p~vdv~et~~~~~i~~~~lP-G-~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~v 210 (310)
...+.+..|.+...|.+. +| | .+..|+.|.+..+. |.| .-. . .+...... .| .|...|
T Consensus 4 ~e~Y~WtQTl~eV~V~i~-lp~~~~~~kdv~v~i~~~~--l~v--~~~--~---~~~~~~~i----~G------~L~~~V 63 (102)
T cd06495 4 RENYTWSQDYTDVEVRVP-VPKDVVKGRQVSVDLQSSS--IRV--SVR--D---GGGEKVLM----EG------EFTHKI 63 (102)
T ss_pred CCceEEEeECCeEEEEEE-CCCCCccceEEEEEEEcCE--EEE--EEe--c---CCCCceEE----eC------cccCcc
Confidence 356778899999999999 99 6 46899999999999 888 221 0 00000111 12 477788
Q ss_pred ccCCeEEEeeeCCE-EEEEEeCC
Q 041271 211 RLDDFKTEMEEDGV-LTVTFTKP 232 (310)
Q Consensus 211 d~~~I~A~l~~dGv-L~ItvPK~ 232 (310)
+.+.-.=.++ ||- |.|++-|.
T Consensus 64 ~~des~Wtle-d~~~l~I~L~K~ 85 (102)
T cd06495 64 NTENSLWSLE-PGKCVLLSLSKC 85 (102)
T ss_pred cCccceEEEe-CCCEEEEEEEEC
Confidence 8888777788 865 89999998
No 79
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=89.77 E-value=4.1 Score=31.40 Aligned_cols=75 Identities=11% Similarity=0.160 Sum_probs=50.6
Q ss_pred EEEeecCcEEEEEEecCCC--CCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccC
Q 041271 136 IYWETSLDKHVLKASLLPG--MKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLD 213 (310)
Q Consensus 136 vdv~et~~~~~i~~~~lPG--~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~ 213 (310)
.||+.+++..+|.+. ..+ ...+++.+....+. |.| +-. .. +. .|...+.|=..|+++
T Consensus 1 ~DWyQt~~~Vtitiy-~K~~~~~~~~v~v~~~~~~--l~v--~~~--~~----~~----------~~~~~~~L~~~I~~~ 59 (87)
T cd06490 1 YDWFQTDSEVTIVVY-TKSKGNPADIVIVDDQQRE--LRV--EII--LG----DK----------SYLLHLDLSNEVQWP 59 (87)
T ss_pred CCceECCCEEEEEEE-EcccCCCCccEEEECCCCE--EEE--EEE--CC----Cc----------eEEEeeeccccCCCC
Confidence 378999999999999 985 44555556656666 777 322 11 11 255566787888877
Q ss_pred -CeEEEeeeCCEEEEEEeCC
Q 041271 214 -DFKTEMEEDGVLTVTFTKP 232 (310)
Q Consensus 214 -~I~A~l~~dGvL~ItvPK~ 232 (310)
.++.... -|-+.|++.|.
T Consensus 60 ~~~~~~~~-~~KVEI~L~K~ 78 (87)
T cd06490 60 CEVRISTE-TGKIELVLKKK 78 (87)
T ss_pred cEEEEccc-CceEEEEEEcC
Confidence 4444444 57889999998
No 80
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=88.96 E-value=5.1 Score=30.87 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=52.4
Q ss_pred eeEEEeCCEEEEEEEcCC--CCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeee--C
Q 041271 27 TRWEYDGDKIVCKASLPA--VRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSME--D 102 (310)
Q Consensus 27 ~dv~E~ed~y~v~vdLPG--v~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~--d 102 (310)
.||+.+++..+|.+-..+ ...+++.+....+.|.|+-... .-.|...+.|=..++ ++. ...+. -
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~----------~~~~~~~~~L~~~I~-~~~-~~~~~~~~ 68 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG----------DKSYLLHLDLSNEVQ-WPC-EVRISTET 68 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC----------CceEEEeeeccccCC-CCc-EEEEcccC
Confidence 389999999999999886 4555566666777898873221 112455667777777 543 44444 6
Q ss_pred CeEEEEeecccc
Q 041271 103 GVLTVTFTRDAA 114 (310)
Q Consensus 103 GvL~I~lPK~~~ 114 (310)
|-++|.+.|.+.
T Consensus 69 ~KVEI~L~K~e~ 80 (87)
T cd06490 69 GKIELVLKKKEP 80 (87)
T ss_pred ceEEEEEEcCCC
Confidence 788899988764
No 81
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=82.15 E-value=19 Score=27.71 Aligned_cols=72 Identities=25% Similarity=0.284 Sum_probs=50.2
Q ss_pred EEEeCCEEEEEEEcC---CCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCC-e
Q 041271 29 WEYDGDKIVCKASLP---AVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDG-V 104 (310)
Q Consensus 29 v~E~ed~y~v~vdLP---Gv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dG-v 104 (310)
|..+.+...|.+.+| |+++.|++|.+..+.|.|.-+. . ..--.=.|...|+ .+...=..+|| .
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g-----~-------~~~i~G~L~~~V~-~des~Wtled~~~ 69 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKG-----Q-------PPIIDGELYNEVK-VEESSWLIEDGKV 69 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECC-----C-------ceEEeCcccCccc-ccccEEEEeCCCE
Confidence 567788899999986 3789999999999999997311 0 0011124666777 54444456786 7
Q ss_pred EEEEeeccc
Q 041271 105 LTVTFTRDA 113 (310)
Q Consensus 105 L~I~lPK~~ 113 (310)
|.|.+-|..
T Consensus 70 l~i~L~K~~ 78 (87)
T cd06492 70 VTVNLEKIN 78 (87)
T ss_pred EEEEEEECC
Confidence 999998874
No 82
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=76.77 E-value=37 Score=27.17 Aligned_cols=79 Identities=13% Similarity=0.262 Sum_probs=53.7
Q ss_pred ceeeEEEeCCEEEEEEEcC-CC-CCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeC
Q 041271 25 ISTRWEYDGDKIVCKASLP-AV-RMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMED 102 (310)
Q Consensus 25 ~~~dv~E~ed~y~v~vdLP-Gv-~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~d 102 (310)
....|..+.+...|++.|| |. +..||.|.+..+.|.|.-+.. .... .--.| .|+..|+ .+...=.++|
T Consensus 5 e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~--~~~~-~~i~G------~L~~~V~-~des~Wtled 74 (102)
T cd06495 5 ENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDG--GGEK-VLMEG------EFTHKIN-TENSLWSLEP 74 (102)
T ss_pred CceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecC--CCCc-eEEeC------cccCccc-CccceEEEeC
Confidence 3456889999999999999 54 688999999999999984210 0000 01122 4667777 4444445677
Q ss_pred Ce-EEEEeeccc
Q 041271 103 GV-LTVTFTRDA 113 (310)
Q Consensus 103 Gv-L~I~lPK~~ 113 (310)
|- |.|.+-|..
T Consensus 75 ~~~l~I~L~K~~ 86 (102)
T cd06495 75 GKCVLLSLSKCS 86 (102)
T ss_pred CCEEEEEEEECC
Confidence 54 799998863
No 83
>PF14913 DPCD: DPCD protein family
Probab=71.36 E-value=16 Score=32.65 Aligned_cols=78 Identities=13% Similarity=0.220 Sum_probs=56.1
Q ss_pred CCceeeEEEeCCEEEEEE-EcCCCCCCceEEEEeC--CEEEEEEEEEecccceeEEeecceEEeeeCCcc------cCcC
Q 041271 23 SNISTRWEYDGDKIVCKA-SLPAVRMEDVKIDIND--KELTLTRELNIADGGTILRRFLKVSRNFDLPDG------VKRS 93 (310)
Q Consensus 23 ~~~~~dv~E~ed~y~v~v-dLPGv~~edI~V~v~~--~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~------vd~~ 93 (310)
.+|-+=-..+...|.-++ +|| +..+--+|.+++ +.++|+-.. -.|...|.+|+- ++ .
T Consensus 85 ~nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtN------------KKYyKk~~IPDl~R~~l~l~-~ 150 (194)
T PF14913_consen 85 SNPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTN------------KKYYKKFSIPDLDRCGLPLE-Q 150 (194)
T ss_pred CCCEEEEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECcC------------ccceeEecCCcHHhhCCCcc-h
Confidence 345555578999999999 888 888988888854 568888321 244667777752 23 4
Q ss_pred CcceeeeeCCeEEEEeecccc
Q 041271 94 NFKSTSMEDGVLTVTFTRDAA 114 (310)
Q Consensus 94 ~~~~A~~~dGvL~I~lPK~~~ 114 (310)
+..+....+..|-|+..|+..
T Consensus 151 ~~ls~~h~nNTLIIsYkKP~~ 171 (194)
T PF14913_consen 151 SALSFAHQNNTLIISYKKPKE 171 (194)
T ss_pred hhceeeeecCeEEEEecCcHH
Confidence 567788889999999877644
No 84
>PF14913 DPCD: DPCD protein family
Probab=69.85 E-value=37 Score=30.41 Aligned_cols=78 Identities=14% Similarity=0.308 Sum_probs=58.4
Q ss_pred ecceEEEeecCcEEEEEE-ecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCC-
Q 041271 132 LNAVIYWETSLDKHVLKA-SLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPAD- 209 (310)
Q Consensus 132 ~~p~vdv~et~~~~~i~~-~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~- 209 (310)
.+|.+--.+|...|+.++ + || +.++-.+|+++++.+.++| +-. + ..|+++|.+|+-
T Consensus 85 ~nP~~~r~dTk~~fqWRIRN-LP-YP~dvYsVtvd~~~r~ivv--RTt--------N----------KKYyKk~~IPDl~ 142 (194)
T PF14913_consen 85 SNPIFVRRDTKTSFQWRIRN-LP-YPKDVYSVTVDEDERCIVV--RTT--------N----------KKYYKKFSIPDLD 142 (194)
T ss_pred CCCEEEEEcCccceEEEEcc-CC-CCccceEEEEcCCCcEEEE--ECc--------C----------ccceeEecCCcHH
Confidence 456666688999999998 5 77 7788888888876544777 322 1 146677888842
Q ss_pred -----cccCCeEEEeeeCCEEEEEEeCC
Q 041271 210 -----VRLDDFKTEMEEDGVLTVTFTKP 232 (310)
Q Consensus 210 -----vd~~~I~A~l~~dGvL~ItvPK~ 232 (310)
.+.+.++..+. |..|.|+..|.
T Consensus 143 R~~l~l~~~~ls~~h~-nNTLIIsYkKP 169 (194)
T PF14913_consen 143 RCGLPLEQSALSFAHQ-NNTLIISYKKP 169 (194)
T ss_pred hhCCCcchhhceeeee-cCeEEEEecCc
Confidence 37788999999 99999999887
No 85
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=63.84 E-value=69 Score=26.64 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=48.9
Q ss_pred ceEEEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccC
Q 041271 134 AVIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLD 213 (310)
Q Consensus 134 p~vdv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~ 213 (310)
..+.+...++ ..+++. . ..+.++++.+++. |.| ..+. ...-....|..... ...-.-.+.||.++..+
T Consensus 66 ~~V~I~~~~~-~~i~v~-~---~~k~~~~~~~~~~--L~I--~~~~--~~~~~~~~~~~~~~-~~~~~i~I~lP~~~~l~ 133 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVE-Y---NGKKPEISVEGGT--LTI--KSKD--RESFFFKGFNFNNS-DNKSKITIYLPKDYKLD 133 (166)
T ss_pred eeEEEEEcCC-ccEEEE-E---cCcEEEEEEcCCE--EEE--EEec--ccccccceEEEccc-CCCcEEEEEECCCCcee
Confidence 4455655444 555666 4 2126888888888 999 4431 11101112222211 23345568889888888
Q ss_pred CeEEEeeeCCEEEEEE
Q 041271 214 DFKTEMEEDGVLTVTF 229 (310)
Q Consensus 214 ~I~A~l~~dGvL~Itv 229 (310)
+++.... +|-++|.=
T Consensus 134 ~i~i~~~-~G~i~i~~ 148 (166)
T PF13349_consen 134 KIDIKTS-SGDITIED 148 (166)
T ss_pred EEEEEec-cccEEEEc
Confidence 8888888 88888763
No 86
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=58.89 E-value=73 Score=27.98 Aligned_cols=140 Identities=15% Similarity=0.196 Sum_probs=0.0
Q ss_pred CCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCCeEEEEeecc------cccccccc
Q 041271 47 MEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDGVLTVTFTRD------AAATANTS 120 (310)
Q Consensus 47 ~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dGvL~I~lPK~------~~a~a~~~ 120 (310)
|++|+|.++++.|+|+| ..|+..+.| ...+....+++.+.+..+.. ...+..+-
T Consensus 12 P~~V~v~i~~~~v~vkG------------p~G~l~~~~--------~~~v~i~~~~~~i~v~~~~~~k~~~a~~gt~~sl 71 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKG------------PKGTLSRKI--------PDLITIEIQDNSLFVSKKDESKKARALHGLYRTL 71 (178)
T ss_pred CCCCEEEEECCEEEEEC------------CCEEEEEEC--------CCCeEEEEeCCEEEEEcCCCCHHHHHHHHHHHHH
Q ss_pred ccccchheeeeecceEE---------------EeecCcEEEEEEecCCCCCCCCeEEEEECC-eeeEEEEEEEEeeeccc
Q 041271 121 SRSVYKKVIAFLNAVIY---------------WETSLDKHVLKASLLPGMKKEDVKIEIEDD-GAELKMIVLLETEEEEG 184 (310)
Q Consensus 121 s~~~~~~~~~~~~p~vd---------------v~et~~~~~i~~~~lPG~~~edI~V~v~~~-~~~L~I~~~g~~~~~~~ 184 (310)
-..+.......+.-.+. ...-+..+.+.+. +| ++++|++.++ . |.| +|.-++.
T Consensus 72 I~Nmi~GVt~Gf~~~L~lvGvGyr~~~~g~~l~l~LG~sh~i~~~-IP----~gv~v~~~~~t~--I~i--~G~dke~-- 140 (178)
T CHL00140 72 INNMVIGVSEGFEKKLELQGVGYRAQVQGKDLILNLGYSHPVKIK-IP----PGISVEVENNTN--ITI--KGIDKEL-- 140 (178)
T ss_pred HHHHHhhcccCceEEEEEEEEEEEEEEeCCcEEEEecCCeeEEEE-CC----CCeEEEeCCCCE--EEE--EECCHHH--
Q ss_pred CCCccEEEEeeecceEE---EEEECCCCcccCCeEEEeeeCCEEEEEEeCC
Q 041271 185 DTIPEWLLEEFTDGKII---RRFKLPADVRLDDFKTEMEEDGVLTVTFTKP 232 (310)
Q Consensus 185 ~~~~~~~~~E~~~g~F~---R~~~LP~~vd~~~I~A~l~~dGvL~ItvPK~ 232 (310)
.|.|. |+|.-|+.+....|. |. |=.+...--|.
T Consensus 141 ------------Vgq~AA~Ir~~r~pepYKGKGI~--y~-~e~i~~K~gK~ 176 (178)
T CHL00140 141 ------------VGQFAAKIRSVRPPEPYKGKGIR--YK-GEVIRRKAGKA 176 (178)
T ss_pred ------------HHHHHHHHhccCCCCCcCCccEe--EC-CEEEEEecccC
No 87
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=54.06 E-value=81 Score=27.61 Aligned_cols=44 Identities=30% Similarity=0.402 Sum_probs=30.0
Q ss_pred CCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCCeEEEEee
Q 041271 47 MEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDGVLTVTFT 110 (310)
Q Consensus 47 ~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dGvL~I~lP 110 (310)
|++|+|.++++.|+|+|.+ |+..+.| |..+. ...+++.+.+...
T Consensus 11 P~~V~v~~~~~~v~v~Gp~------------G~l~~~l--~~~i~------i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGNVVTVKGPK------------GELSRTL--HPGVT------VKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeCCEEEEEcCC------------eEEEEEc--CCCeE------EEEECCEEEEEec
Confidence 6899999999999999854 4444444 44333 3457776666644
No 88
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=53.48 E-value=72 Score=27.99 Aligned_cols=44 Identities=27% Similarity=0.315 Sum_probs=29.9
Q ss_pred CCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCCeEEEEee
Q 041271 47 MEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDGVLTVTFT 110 (310)
Q Consensus 47 ~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dGvL~I~lP 110 (310)
|++|+|.++++.|+|+|.+ |...+.| |..++ ...+++.|.+...
T Consensus 12 P~~V~v~~~~~~v~vkGp~------------G~l~~~~--~~~v~------i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTINGNVVTVKGPK------------GELSRTL--NPDVT------VKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEECCEEEEECCC------------EEEEEEc--CCCeE------EEEECCEEEEEcC
Confidence 5899999999999999854 4455555 44333 3446776666643
No 89
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=52.73 E-value=73 Score=28.17 Aligned_cols=78 Identities=26% Similarity=0.434 Sum_probs=56.9
Q ss_pred ecceEEEeecCcEEEEEEecCCCC-CCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCc
Q 041271 132 LNAVIYWETSLDKHVLKASLLPGM-KKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADV 210 (310)
Q Consensus 132 ~~p~vdv~et~~~~~i~~~~lPG~-~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~v 210 (310)
..+.+.|..|=..+.|.+.+.||+ +..+|.|.+.... |.|.+.|+. ... -| .|...|
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~h--I~V~~kg~~----------~il----dG------~L~~~v 74 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKH--IKVGLKGQP----------PIL----DG------ELSHSV 74 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeeeE--EEEecCCCC----------cee----cC------cccccc
Confidence 456778889999999999844588 8999999999998 777112211 111 12 366778
Q ss_pred ccCCeEEEeeeCCEEEEEEeCC
Q 041271 211 RLDDFKTEMEEDGVLTVTFTKP 232 (310)
Q Consensus 211 d~~~I~A~l~~dGvL~ItvPK~ 232 (310)
+.+.-.=.++ +|.+.|.+-++
T Consensus 75 k~des~WtiE-d~k~i~i~l~K 95 (179)
T KOG2265|consen 75 KVDESTWTIE-DGKMIVILLKK 95 (179)
T ss_pred ccccceEEec-CCEEEEEEeec
Confidence 8888778899 99888888776
No 90
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=45.12 E-value=19 Score=34.26 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=40.2
Q ss_pred hccCcccccCCCceeeEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEE
Q 041271 13 ITESSKFIDSSNISTRWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRE 64 (310)
Q Consensus 13 ~~~~~~~~~~~~~~~dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~ 64 (310)
+.+.|.-.....++.|+.++.+...|-+--|-++.++|++.+++++|.|+-+
T Consensus 165 ~~~~~qE~~~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q 216 (368)
T COG5091 165 IETAPQESPKMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQ 216 (368)
T ss_pred cccCcccCccceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeee
Confidence 3344444334456778888888888888888899999999999999999944
No 91
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=40.36 E-value=95 Score=24.58 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=35.3
Q ss_pred ccccC-CCceeeEEEeCCEEEEEEEcCCC-----CCCceEEEEeCCEEEEE
Q 041271 18 KFIDS-SNISTRWEYDGDKIVCKASLPAV-----RMEDVKIDINDKELTLT 62 (310)
Q Consensus 18 ~~~~~-~~~~~dv~E~ed~y~v~vdLPGv-----~~edI~V~v~~~~L~I~ 62 (310)
.|... ..|.+.|+++++.|.|.+--+.. +++...|.-+++.+.|.
T Consensus 18 ~W~Sv~~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g~~fI~ 68 (95)
T PF12992_consen 18 EWESVNGKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDGNLFIE 68 (95)
T ss_pred EeEccCCCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCCEEEEe
Confidence 34443 36899999999999999866554 67777788888888888
No 92
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=37.17 E-value=11 Score=22.77 Aligned_cols=15 Identities=27% Similarity=0.580 Sum_probs=11.6
Q ss_pred ccccCceEEEecccc
Q 041271 283 LAKAAPVCILCGHAS 297 (310)
Q Consensus 283 ~~~~~~~~~~~~~~~ 297 (310)
+..++-.|.+|||.-
T Consensus 10 V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 10 VPESAKFCPHCGYDF 24 (26)
T ss_pred chhhcCcCCCCCCCC
Confidence 355778899999964
No 93
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=34.60 E-value=1.4e+02 Score=28.07 Aligned_cols=84 Identities=11% Similarity=0.160 Sum_probs=62.6
Q ss_pred CceeeEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCC
Q 041271 24 NISTRWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDG 103 (310)
Q Consensus 24 ~~~~dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dG 103 (310)
..+-||..+++..+|.|..-|.-++.-.|..++-.|.|+-..... ..+|...+.|=.-|+ .+..++.+---
T Consensus 214 ~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~g--------na~fd~d~kLwgvvn-ve~s~v~m~~t 284 (320)
T KOG1667|consen 214 KCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFG--------NASFDLDYKLWGVVN-VEESSVVMGET 284 (320)
T ss_pred cchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCC--------Cceeeccceeeeeec-hhhceEEeecc
Confidence 457899999999999999999999999999999999888332100 114555666666666 66677777777
Q ss_pred eEEEEeecccccc
Q 041271 104 VLTVTFTRDAAAT 116 (310)
Q Consensus 104 vL~I~lPK~~~a~ 116 (310)
-.+|.+++.++..
T Consensus 285 kVEIsl~k~ep~s 297 (320)
T KOG1667|consen 285 KVEISLKKAEPGS 297 (320)
T ss_pred eEEEEEeccCCCC
Confidence 7788888776543
No 94
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=33.98 E-value=64 Score=23.54 Aligned_cols=46 Identities=28% Similarity=0.374 Sum_probs=30.7
Q ss_pred CCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeeeeCCeEEEEee
Q 041271 47 MEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDGVLTVTFT 110 (310)
Q Consensus 47 ~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~~dGvL~I~lP 110 (310)
|+.++|.++++.+++.|... ..++.+|..+. +....+|+.+.+...
T Consensus 2 P~gV~v~~~~~~i~v~G~~g--------------~l~~~~~~~v~----v~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVKGPKG--------------ELSRPIPPGVK----VEIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEETTEEEEESSSS--------------EEEEEETTTEE----EEEEEETTSEEEEEE
T ss_pred CCcEEEEEeCcEEEEECCCE--------------eEEEECCCCee----EEEEcCCCceEEEEC
Confidence 57899999999999997441 34556676654 333356776666554
No 95
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=33.47 E-value=76 Score=22.18 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=19.7
Q ss_pred CCCCCCceEEEEeCCEEEEEEEEE
Q 041271 43 PAVRMEDVKIDINDKELTLTRELN 66 (310)
Q Consensus 43 PGv~~edI~V~v~~~~L~I~g~~~ 66 (310)
++++..+|+|.+.++.+++.|.-.
T Consensus 12 ~~~~~~~i~v~v~~g~v~L~G~v~ 35 (64)
T PF04972_consen 12 PWLPDSNISVSVENGVVTLSGEVP 35 (64)
T ss_dssp -CTT-TTEEEEEECTEEEEEEEES
T ss_pred cccCCCeEEEEEECCEEEEEeeCc
Confidence 367777899999999999999874
No 96
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=32.97 E-value=1.4e+02 Score=21.27 Aligned_cols=39 Identities=5% Similarity=0.043 Sum_probs=30.2
Q ss_pred eeeEE-EeCCEEEEEEEcCCCCCCceEEEEe-CCEEEEEEE
Q 041271 26 STRWE-YDGDKIVCKASLPAVRMEDVKIDIN-DKELTLTRE 64 (310)
Q Consensus 26 ~~dv~-E~ed~y~v~vdLPGv~~edI~V~v~-~~~L~I~g~ 64 (310)
++.+. -..+.|.|++..+|+..-.-.|.+. +....|...
T Consensus 26 p~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~ 66 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVT 66 (71)
T ss_pred cceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEE
Confidence 44555 5688999999999999988888885 667777654
No 97
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=32.61 E-value=36 Score=36.89 Aligned_cols=31 Identities=29% Similarity=0.487 Sum_probs=25.4
Q ss_pred eeehhhHHHHhhhcccccCceEEEeccccCC
Q 041271 269 RVLSAKKLISKLGVLAKAAPVCILCGHASSN 299 (310)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (310)
+|--++.++.-+|.--.-||+-.+|||.|+.
T Consensus 482 ~~~~ae~~Lr~mGLt~~FAplVvl~GHGS~s 512 (788)
T PF10070_consen 482 QADLAEGALRSMGLTENFAPLVVLVGHGSSS 512 (788)
T ss_pred HHHHHHHHHHHcCCccCCCCeEEEecCCCCC
Confidence 3445677888899888999999999998763
No 98
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=30.90 E-value=31 Score=32.88 Aligned_cols=83 Identities=13% Similarity=0.054 Sum_probs=61.3
Q ss_pred eeecceEEEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCC
Q 041271 130 AFLNAVIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPAD 209 (310)
Q Consensus 130 ~~~~p~vdv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~ 209 (310)
......+|+.+|.....|-+. -|-+..|+|++-+++|. |.| +-.. + ..+ -.|.-...|-..
T Consensus 173 ~~~~i~yd~s~Ts~t~~ifiy-~~pv~deqVs~~~e~NT--L~I--~~q~--~---~~~---------~~~~~~~~Ly~e 233 (368)
T COG5091 173 PKMEIAYDFSETSDTAIIFIY-RPPVGDEQVSPVLEGNT--LSI--SYQP--R---RLR---------LWNDITISLYKE 233 (368)
T ss_pred ccceeeeeccccceeEEEEEe-cCCCCccccceeecCCc--cee--eeec--c---ccc---------hHHHhhhhhhhh
Confidence 345677888889888888888 89999999999999999 999 4332 1 111 124445677788
Q ss_pred cccCCeEEEeeeCCEEEEEEeCC
Q 041271 210 VRLDDFKTEMEEDGVLTVTFTKP 232 (310)
Q Consensus 210 vd~~~I~A~l~~dGvL~ItvPK~ 232 (310)
|+++...-++- --.+.|++-|.
T Consensus 234 v~P~~~s~k~f-sK~~e~~l~KV 255 (368)
T COG5091 234 VYPDIRSIKSF-SKRVEVHLRKV 255 (368)
T ss_pred cCcchhhhhhc-chhheehhhhh
Confidence 88888776666 46778888776
No 99
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=29.92 E-value=3.2e+02 Score=22.53 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=23.0
Q ss_pred ceeeEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEE
Q 041271 25 ISTRWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRE 64 (310)
Q Consensus 25 ~~~dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~ 64 (310)
..+.|...++ ..+.++. ..+.+++..+++.|.|..+
T Consensus 66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~~L~I~~~ 101 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEY---NGKKPEISVEGGTLTIKSK 101 (166)
T ss_pred eeEEEEEcCC-ccEEEEE---cCcEEEEEEcCCEEEEEEe
Confidence 3455555443 4455555 2126888889999999866
No 100
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=29.12 E-value=2.3e+02 Score=25.07 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=30.2
Q ss_pred CCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeEEEeeeCCEEEEEEe
Q 041271 157 KEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKTEMEEDGVLTVTFT 230 (310)
Q Consensus 157 ~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~A~l~~dGvL~ItvP 230 (310)
|++++|+++++. ++| +|. .|...+.|.-| .++..++ +|-|.|+..
T Consensus 13 P~~V~v~i~~~~--v~V--kGp------------------~G~L~~~~~~~------~v~i~~~-~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEGLV--VTV--KGP------------------KGELTRDFWYP------GVTISVE-DGKVVIETE 57 (180)
T ss_pred CCCCEEEEECCE--EEE--ECC------------------CeEEEEEecCC------cEEEEEE-CCEEEEEEC
Confidence 688999999988 888 765 34455444322 3555667 887777754
No 101
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=26.94 E-value=3.2e+02 Score=22.20 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=30.7
Q ss_pred EEEEEECCCCc-ccCCeEEEeeeCCEEEEEEeCCCCCCCCCceEEEEecCcccc
Q 041271 200 IIRRFKLPADV-RLDDFKTEMEEDGVLTVTFTKPIKPKKTQQQLISKLLGFLAK 252 (310)
Q Consensus 200 F~R~~~LP~~v-d~~~I~A~l~~dGvL~ItvPK~~~~~~~~~r~I~I~~~~~~~ 252 (310)
+..-+....++ +...|+-..+ +-+|-...|+. ..++|.|+.++...
T Consensus 46 ys~li~~d~dvG~l~~Vkf~W~-~~~~n~~~p~~------~~~~I~Vq~Ge~~~ 92 (113)
T cd01759 46 YSAFIDVDVDVGPLTKVKFIWN-NNVINITLPKV------GAEKITVQSGKDGK 92 (113)
T ss_pred EEEEEEccCCCCCEEEEEEEEe-CCccCCCCCeE------EEEEEEEEeCCCcc
Confidence 44455555554 5556777777 77776666666 44899999887654
No 102
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=26.49 E-value=2.5e+02 Score=24.52 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=30.0
Q ss_pred CCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeEEEeeeCCEEEEEEe
Q 041271 157 KEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKTEMEEDGVLTVTFT 230 (310)
Q Consensus 157 ~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~A~l~~dGvL~ItvP 230 (310)
|++++|+++++. |+| +|. .|...+.| |. .+...++ ++.|.|...
T Consensus 11 P~~V~v~~~~~~--v~v--~Gp------------------~G~l~~~l--~~-----~i~i~~~-~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGNV--VTV--KGP------------------KGELSRTL--HP-----GVTVKVE-DGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeCCE--EEE--EcC------------------CeEEEEEc--CC-----CeEEEEE-CCEEEEEec
Confidence 589999999988 888 765 34455544 43 3445567 787777754
No 103
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=26.23 E-value=2.5e+02 Score=26.49 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=64.3
Q ss_pred eecceEEEeecCcEEEEEEecCCCCCCCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCc
Q 041271 131 FLNAVIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADV 210 (310)
Q Consensus 131 ~~~p~vdv~et~~~~~i~~~~lPG~~~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~v 210 (310)
...-+-||..++..++|.+. --|.-++--.|+.+.-. |.| +-.. . .. -.+|...+.|=.-|
T Consensus 212 V~~cR~Dwhqt~~~Vti~VY-~k~~lpe~s~iean~~~--l~V--~ivf--~--~g----------na~fd~d~kLwgvv 272 (320)
T KOG1667|consen 212 VVKCRHDWHQTNGFVTINVY-AKGALPETSNIEANGTT--LHV--SIVF--G--FG----------NASFDLDYKLWGVV 272 (320)
T ss_pred cccchhhhhhcCCeEEEEEE-eccCCcccceeeeCCeE--EEE--EEEe--c--CC----------Cceeeccceeeeee
Confidence 34567899999999999999 99999998888888777 777 2221 0 01 12577778887888
Q ss_pred ccCCeEEEeeeCCEEEEEEeCC
Q 041271 211 RLDDFKTEMEEDGVLTVTFTKP 232 (310)
Q Consensus 211 d~~~I~A~l~~dGvL~ItvPK~ 232 (310)
+++.-.+.|- .--..|+++|.
T Consensus 273 nve~s~v~m~-~tkVEIsl~k~ 293 (320)
T KOG1667|consen 273 NVEESSVVMG-ETKVEISLKKA 293 (320)
T ss_pred chhhceEEee-cceEEEEEecc
Confidence 9999999998 88899999998
No 104
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=25.67 E-value=3e+02 Score=23.97 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=30.1
Q ss_pred CCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeEEEeeeCCEEEEEEe
Q 041271 157 KEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKTEMEEDGVLTVTFT 230 (310)
Q Consensus 157 ~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~A~l~~dGvL~ItvP 230 (310)
|++++|+++++. ++| +|.. |+..+.|. |. .|....+ +|.|+|..+
T Consensus 7 P~~V~v~i~~~~--i~v--kGp~------------------G~L~~~~~-~~-----~v~i~~~-~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGNI--VTV--KGPK------------------GEVTRELW-YP-----GIEISVE-DGKVVIETD 51 (170)
T ss_pred CCCCEEEEeCCE--EEE--ECCC------------------eEEEEEEe-CC-----cEEEEEe-CCEEEEEeC
Confidence 588999999998 999 7663 44554442 22 3445567 887777754
No 105
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=25.05 E-value=1.1e+02 Score=21.32 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=20.0
Q ss_pred CCCCCCCeEEEEECCeeeEEEEEEEEeee
Q 041271 153 PGMKKEDVKIEIEDDGAELKMIVLLETEE 181 (310)
Q Consensus 153 PG~~~edI~V~v~~~~~~L~I~~~g~~~~ 181 (310)
++++..+|+|.+.++. +.+ +|....
T Consensus 12 ~~~~~~~i~v~v~~g~--v~L--~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVENGV--VTL--SGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEECTE--EEE--EEEESS
T ss_pred cccCCCeEEEEEECCE--EEE--EeeCcH
Confidence 4677779999999999 999 998754
No 106
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=24.88 E-value=2.5e+02 Score=25.04 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=31.7
Q ss_pred CCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeEEEeeeCCEEEEEEeC
Q 041271 157 KEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKTEMEEDGVLTVTFTK 231 (310)
Q Consensus 157 ~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~A~l~~dGvL~ItvPK 231 (310)
|++++|+++++. ++| +|. .|...+.|.=|. ..|....+ ||.|.|+-+.
T Consensus 13 P~~V~V~i~~~~--v~V--kGp------------------~G~L~~~~~~~~----~~i~i~~~-~~~i~v~~~~ 60 (190)
T PTZ00027 13 PEGVTVTVKSRK--VTV--TGK------------------YGELTRSFRHLP----VDIKLSKD-GKYIKVEMWF 60 (190)
T ss_pred CCCCEEEEECCE--EEE--ECC------------------CceEEEEecCCC----ceEEEEeC-CCEEEEEeCC
Confidence 689999999988 899 665 345555443211 24555667 8877777443
No 107
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=24.57 E-value=6.8e+02 Score=24.57 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=26.4
Q ss_pred ecceEEEEEECCCCcccCCeEEE-----------eeeCCEEEEEEeCC
Q 041271 196 TDGKIIRRFKLPADVRLDDFKTE-----------MEEDGVLTVTFTKP 232 (310)
Q Consensus 196 ~~g~F~R~~~LP~~vd~~~I~A~-----------l~~dGvL~ItvPK~ 232 (310)
....+.-++.||.+++...+-+. .+ +|.++++.+..
T Consensus 130 ~i~~v~v~i~~P~~~~~~~~~~~~g~~~~~~~~~~~-~~~v~~~~~~l 176 (511)
T PF09972_consen 130 PIENVTVTITLPKPVDNSKAWGHPGPYGGTVEIDDD-DGTVTFTTDNL 176 (511)
T ss_pred ccceEEEEEECCCCCcceEEEEeccCCCccceeeec-CCEEEEEEecc
Confidence 35678888999976666444333 56 89999999997
No 108
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=24.03 E-value=2.7e+02 Score=24.35 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=30.5
Q ss_pred CCCeEEEEECCeeeEEEEEEEEeeecccCCCccEEEEeeecceEEEEEECCCCcccCCeEEEeeeCCEEEEEEe
Q 041271 157 KEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKTEMEEDGVLTVTFT 230 (310)
Q Consensus 157 ~edI~V~v~~~~~~L~I~~~g~~~~~~~~~~~~~~~~E~~~g~F~R~~~LP~~vd~~~I~A~l~~dGvL~ItvP 230 (310)
|++++|+++++. |+| +|. .|...+.| |.. |...++ ++.|.|...
T Consensus 12 P~~V~v~~~~~~--v~v--kGp------------------~G~l~~~~--~~~-----v~i~~~-~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTINGNV--VTV--KGP------------------KGELSRTL--NPD-----VTVKVE-DNEITVTRP 55 (178)
T ss_pred CCCCEEEEECCE--EEE--ECC------------------CEEEEEEc--CCC-----eEEEEE-CCEEEEEcC
Confidence 589999999998 999 776 34555555 433 444567 787777644
No 109
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.72 E-value=62 Score=32.46 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=60.0
Q ss_pred CCceeeEEEeCCEEEEEEEcCCCCCCceEEEEeCCEEEEEEEEEecccceeEEeecceEEeeeCCcccCcCCcceeee--
Q 041271 23 SNISTRWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSM-- 100 (310)
Q Consensus 23 ~~~~~dv~E~ed~y~v~vdLPGv~~edI~V~v~~~~L~I~g~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~~~~A~~-- 100 (310)
-+|.+-+..+++...+.+..|-++...+.+...++..+.+ .|.+..++.+|..+.......|.+
T Consensus 2 ltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~--------------~~pyflrl~~p~~~~~d~~~n~s~d~ 67 (466)
T KOG3247|consen 2 LTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFS--------------AGPYFLRLAGPGMVEDDARPNASYDA 67 (466)
T ss_pred CCceeeeeecCceEEEEeeccccchhccchhhHhhhhhhc--------------cchhHHhhcCcchhhhhccccCcccc
Confidence 3678889999999999999998888888888888877777 455566677777766444444444
Q ss_pred eCCeEEEEeeccccc
Q 041271 101 EDGVLTVTFTRDAAA 115 (310)
Q Consensus 101 ~dGvL~I~lPK~~~a 115 (310)
++|...|.+||....
T Consensus 68 kd~~~~vK~~K~~~~ 82 (466)
T KOG3247|consen 68 KDGYAHVKVPKFHPG 82 (466)
T ss_pred ccceeEEeecCCCcc
Confidence 589999999986543
No 110
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=20.32 E-value=1.3e+02 Score=21.70 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=18.0
Q ss_pred CCeEEEeeeCCEEEEEEeCCCCCCCCCceEEEEecCc
Q 041271 213 DDFKTEMEEDGVLTVTFTKPIKPKKTQQQLISKLLGF 249 (310)
Q Consensus 213 ~~I~A~l~~dGvL~ItvPK~~~~~~~~~r~I~I~~~~ 249 (310)
..|+|.|+ ||+|.-.=|-. -+...++.|.+..
T Consensus 3 ~~I~aiYe-~GvlkPl~~~~----L~Eg~~V~i~I~~ 34 (60)
T PF01954_consen 3 KVIEAIYE-NGVLKPLEPVD----LPEGEEVKITIEE 34 (60)
T ss_dssp --EEEEEE-TTEEEECS---------TTEEEEEEE--
T ss_pred ceEEEEEE-CCEEEECCCCC----CCCCCEEEEEEec
Confidence 45899999 99998653333 4455667776654
Done!