RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 041271
(310 letters)
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 79.1 bits (194), Expect = 5e-17
Identities = 30/212 (14%), Positives = 66/212 (31%), Gaps = 27/212 (12%)
Query: 32 DGDKIVCKASLPAVRMEDVKIDINDKELTLT-RELNIADGGTILRRFLKVSRNFDLPDGV 90
++ + E++ I + +L + ++ + R+ LP V
Sbjct: 110 GRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESV---GRSIPLPPSV 166
Query: 91 KRSNFKSTSMEDGVLTVTFTRDAAATANTSSRS--------------VYKKVIAFLNAVI 136
R++ ++T D VL + + ++
Sbjct: 167 DRNHIQATITTDDVLVIEAPVNEPNYKAIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIV 226
Query: 137 YWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFT 196
E K L+ + P +DVK+ + + + + +EE+ + EF
Sbjct: 227 TAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKV---YVHGVTGKEEKTENASHSEHREFY 283
Query: 197 DGKIIRRFKLPADVRLDDFKTEMEEDGVLTVT 228
+ F P V + E+ DG++ V
Sbjct: 284 -----KAFVTPEVVDASKTQAEI-VDGLMVVE 309
Score = 49.8 bits (118), Expect = 4e-07
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 152 LPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVR 211
+ K E++ I+ + + K++V + GD E R LP V
Sbjct: 120 VKNFKAEEITIKADKN----KLVVRAQKSVACGDAAMS---ESVG-----RSIPLPPSVD 167
Query: 212 LDDFKTEMEEDGVLTVTFTKPIKPKKTQQQ 241
+ + + D VL + K +
Sbjct: 168 RNHIQATITTDDVLVIEAPVNEPNYKAIKL 197
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 73.1 bits (180), Expect = 5e-16
Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 17/102 (16%)
Query: 143 DKHVLKASLLPGMKKEDVKIEIEDDG-----AELKMIVLLETEEEEGDTIPEWLLEEFTD 197
+ HV KA L PG+KKE+VK+E+ED E + +E++ D W E +
Sbjct: 53 EAHVFKADL-PGVKKEEVKVEVEDGNVLVVSGERT-----KEKEDKNDK---WHRVERSS 103
Query: 198 GKIIRRFKLPADVRLDDFKTEMEEDGVLTVTFTK--PIKPKK 237
GK +RRF+L D ++++ K + E+GVLTVT K KP+
Sbjct: 104 GKFVRRFRLLEDAKVEEVKAGL-ENGVLTVTVPKAEVKKPEV 144
Score = 50.8 bits (122), Expect = 4e-08
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 9 LPAFITESSKFIDSSNISTRWEYDGDKIVCKASLPAVRMEDVKIDI-NDKELTLTRELNI 67
+PA S+ +N W+ + V KA LP V+ E+VK+++ + L ++ E
Sbjct: 28 VPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTK 87
Query: 68 A---DGGTIL---RRFLKVSRNFDLPDGVKRSNFKSTSMEDGVLTVTFTRDAAATANT 119
R K R F L + K K+ +E+GVLTVT +
Sbjct: 88 EKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKA-GLENGVLTVTVPKAEVKKPEV 144
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 70.6 bits (174), Expect = 1e-15
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 143 DKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIR 202
+ VL A L PG+ ++++++ ++ E+ E + E G R
Sbjct: 14 NHFVLYADL-PGIDPSQIEVQMDKGILSIRGERKSESSTETER----FSRIERRYGSFHR 68
Query: 203 RFKLPADVRLDDFKTEMEEDGVLTVTFTK 231
RF LP D +GVL + K
Sbjct: 69 RFALPDSADADGITAAG-RNGVLEIRIPK 96
Score = 55.2 bits (134), Expect = 4e-10
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 32 DGDKIVCKASLPAVRMEDVKIDINDKELTLT----RELNIADGGTIL--RRFLKVSRNFD 85
+ + V A LP + +++ ++ L++ E + RR+ R F
Sbjct: 12 EVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFA 71
Query: 86 LPDGVKRSNFKSTSMEDGVLTVTFTRDAAA 115
LPD + + +GVL + + AA
Sbjct: 72 LPDSADADGITA-AGRNGVLEIRIPKRPAA 100
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 69.0 bits (169), Expect = 2e-14
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 143 DKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIR 202
+ A L PG+ KED+ + D E++ E E + +I R
Sbjct: 66 QHIKVIAWL-PGVNKEDIILNAVGDTLEIRAKRSPLMITESERI---IYSEIPEEEEIYR 121
Query: 203 RFKLPADVRLDDFKTEMEEDGVLTVTFTK--PIKPKK 237
KLPA V+ ++ + E+GVL+V K K
Sbjct: 122 TIKLPATVKEENASAKF-ENGVLSVILPKAESSIKKG 157
Score = 54.7 bits (132), Expect = 2e-09
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 32 DGDKIVCKASLPAVRMEDVKIDINDKELTLT----RELNIADGGTIL---RRFLKVSRNF 84
I A LP V ED+ ++ L + + I ++ R
Sbjct: 64 GDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTI 123
Query: 85 DLPDGVKRSNFKSTSMEDGVLTVTFTRDAAATA 117
LP VK N + E+GVL+V + ++
Sbjct: 124 KLPATVKEENASA-KFENGVLSVILPKAESSIK 155
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 62.6 bits (153), Expect = 1e-12
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 143 DKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIR 202
V+ A L G KE +K + +I+ E E E L + + +
Sbjct: 34 GYLVVVADL-AGFNKEKIKARVSGQNE---LIIEAEREITEPGV---KYLTQRP-KYVRK 85
Query: 203 RFKLPADVRLD-DFKTEMEEDGVLTVTFTKPIKPKKTQQ 240
+LP +V D + + E+GVLT+ PI +
Sbjct: 86 VIRLPYNVAKDAEISGKY-ENGVLTIRI--PIAGTSVFK 121
Score = 55.7 bits (135), Expect = 4e-10
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 32 DGDKIVCKASLPAVRMEDVKIDI-NDKELTLTRELNIADGGTIL--RRFLKVSRNFDLPD 88
+G +V A L E +K + EL + E I + G +R V + LP
Sbjct: 32 EGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPY 91
Query: 89 GVKRSNFKSTSMEDGVLTVT 108
V + S E+GVLT+
Sbjct: 92 NVAKDAEISGKYENGVLTIR 111
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 54.0 bits (130), Expect = 9e-10
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 152 LPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVR 211
+ E++ +++ D V + EE ++ EF RR++LP V
Sbjct: 19 VKHFSPEEISVKVVGD------HVEVHARHEERPDEHGFIAREFH-----RRYRLPPGVD 67
Query: 212 LDDFKTEMEEDGVLTVTFTKPIKPKKTQQQLISK 245
+ + +GVL++ T +K
Sbjct: 68 PAAVTSALSPEGVLSIQATPASAQASLPSPPAAK 101
Score = 51.3 bits (123), Expect = 9e-09
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 32 DGDKIVCKASLPAVRMEDVKIDINDKELTLT--RELNIADGGTILRRFLKVSRNFDLPDG 89
D + E++ + + + + E + G I R F R + LP G
Sbjct: 9 DPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREF---HRRYRLPPG 65
Query: 90 VKRSNFKSTSMEDGVLTVTFTRDAAATA 117
V + S +GVL++ T +A +
Sbjct: 66 VDPAAVTSALSPEGVLSIQATPASAQAS 93
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 52.0 bits (125), Expect = 4e-09
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 32 DGDKIVCKASLPAVRMEDVKIDINDKELTLT--RELNIADGGTILRRFLKVSRNFDLPDG 89
D+ + +++ + D + +T + G I R F +R + LP G
Sbjct: 5 TADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCF---TRKYTLPPG 61
Query: 90 VKRSNFKSTSMEDGVLTVT 108
V + S+ +G LTV
Sbjct: 62 VDPTQVSSSLSPEGTLTVE 80
Score = 48.5 bits (116), Expect = 7e-08
Identities = 12/81 (14%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 152 LPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVR 211
+ +++ ++ +D + + + + + ++ FT R++ LP V
Sbjct: 15 VNHFAPDELTVKTKDG----VVEITGKHAARQDEH--GYISRCFT-----RKYTLPPGVD 63
Query: 212 LDDFKTEMEEDGVLTVTFTKP 232
+ + +G LTV P
Sbjct: 64 PTQVSSSLSPEGTLTVEAPMP 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 6e-09
Identities = 59/341 (17%), Positives = 109/341 (31%), Gaps = 119/341 (34%)
Query: 16 SSKFIDSSNIS------TRWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIAD 69
++K ++ N+S TR K V A I ++ +TLT + +
Sbjct: 255 NAKAWNAFNLSCKILLTTR-----FKQVTDFLSAATT---THISLDHHSMTLTPD----E 302
Query: 70 GGTILRRFLKVSRNFDLPDGVKRSNFKSTSM-----EDGVLTVTFTR----DAAATANTS 120
++L ++L R DLP V +N + S+ DG+ T + D T S
Sbjct: 303 VKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 121 S---------RSVYKKVIAFLNAV--------IYW--------ETSLDKHVLKASLLPGM 155
S R ++ ++ F + + W ++K + K SL+
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK-LHKYSLVEKQ 420
Query: 156 KKE----------DVKIEIEDDGAELKMIV------------------------------ 175
KE ++K+++E++ A + IV
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 176 LLETE-EEEGDTIPEWLLE-EFTDGKIIRRFKLPADVR------LDDFKTEMEEDGVLTV 227
L E E L+ F + KI R + L K
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKF---------- 529
Query: 228 TFTKPIKPKKTQ-QQLISKLLGFLAKAAA----APFAKLNQ 263
+ I + ++L++ +L FL K + + L +
Sbjct: 530 -YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Score = 41.4 bits (96), Expect = 3e-04
Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 28/174 (16%)
Query: 125 YKKVIA-FLNAVIYWETSLD-KHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEE 182
YK +++ F +A + + D K V + KE++ I A + L T
Sbjct: 18 YKDILSVFEDAFV---DNFDCKDVQD-MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 183 EGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKTEMEEDGVLTVTFTKPIKPKKTQQQL 242
+ + + +++F + + +K KTE + ++T + + Q+
Sbjct: 74 KQEEM----VQKFVEEVLRINYKFLM----SPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 243 ISKLLGFLAKAAAAPFAKLNQKSKLLRVLSAKKLI--SKLG----VLAKAAPVC 290
+K +++ P+ KL + LL + AK ++ LG + A VC
Sbjct: 126 FAKY--NVSR--LQPYLKL--RQALLELRPAKNVLIDGVLGSGKTWV--ALDVC 171
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 50.9 bits (122), Expect = 9e-09
Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 141 SLDKHVLKASL-LPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGK 199
+++K +L + E++K+++ D ++ + + EE ++ EF
Sbjct: 2 AMEKDRFSVNLDVKHFSPEELKVKVLGD------VIEVHGKHEERQDEHGFISREFH--- 52
Query: 200 IIRRFKLPADVRLDDFKTEMEEDGVLTVTFTKPIKPKKTQ 239
R++++PADV + M DGVLTV + +
Sbjct: 53 --RKYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPER 90
Score = 50.5 bits (121), Expect = 2e-08
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 30 EYDGDKIVCKASLPAVRMEDVKIDINDKELTLT--RELNIADGGTILRRFLKVSRNFDLP 87
+ D+ + E++K+ + + + E + G I R F R + +P
Sbjct: 2 AMEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREF---HRKYRIP 58
Query: 88 DGVKRSNFKSTSMEDGVLTVT 108
V S+ DGVLTV
Sbjct: 59 ADVDPLTITSSMSSDGVLTVN 79
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 51.5 bits (123), Expect = 3e-08
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 32 DGDKIVCKASLPAVRMEDVKIDINDKELTLT--RELNIADGGTILRRFLKVSRNFDLPDG 89
+ D+ + E++K+ + + + E + G I R F R + +P
Sbjct: 71 EKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREF---HRKYRIPAD 127
Query: 90 VKRSNFKSTSMEDGVLTVTFTRDAAATA 117
V S+ DGVLTV R +
Sbjct: 128 VDPLTITSSLSSDGVLTVNGPRKQVSGP 155
Score = 50.7 bits (121), Expect = 6e-08
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 152 LPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVR 211
+ E++K+++ D ++ + + EE ++ EF R++++PADV
Sbjct: 81 VKHFSPEELKVKVLGD------VIEVHGKHEERQDEHGFISREFH-----RKYRIPADVD 129
Query: 212 LDDFKTEMEEDGVLTVTFTKPIKPKK 237
+ + DGVLTV +
Sbjct: 130 PLTITSSLSSDGVLTVNGPRKQVSGP 155
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 48.3 bits (115), Expect = 1e-07
Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 152 LPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVR 211
+ ED+ +++++D + + + E + D + + RR++LP++V
Sbjct: 20 VKHFSPEDLTVKVQED----FVEIHGKHNERQDDH-------GYISREFHRRYRLPSNVD 68
Query: 212 LDDFKTEMEEDGVLTVTFTKPIKPKKTQQQ 241
+ DG+LT + K
Sbjct: 69 QSALSCSLSADGMLTFSGPKIPSGVDAGHS 98
Score = 47.9 bits (114), Expect = 1e-07
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 32 DGDKIVCKASLPAVRMEDVKIDINDKELTLT--RELNIADGGTILRRFLKVSRNFDLPDG 89
D DK V + ED+ + + + + + D G I R F R + LP
Sbjct: 10 DRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREF---HRRYRLPSN 66
Query: 90 VKRSNFKSTSMEDGVLTVTFTRDAAAT 116
V +S + DG+LT + + +
Sbjct: 67 VDQSALSCSLSADGMLTFSGPKIPSGV 93
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.004
Identities = 54/321 (16%), Positives = 96/321 (29%), Gaps = 100/321 (31%)
Query: 62 TRELNIADG---------------GTILR-RFLKVSRNFDLP---DGVKRSNFKSTSMED 102
TR L ++ G + L+ +F K LP +G + +T E
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK-----ILPEPTEGFAADDEPTTPAE- 59
Query: 103 GVLTVTFTRDAAATANTSSRSVYKKVIAFLNAVI-YWETSL----DKHVLKASLLPGMKK 157
L F ++ S + +V LN + +E D H L A LL
Sbjct: 60 --LVGKFLGYVSSLVEPSKVGQFDQV---LNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 158 EDVK------------------IEIEDDGAELKMIVLLETEEEEGDTI---------PEW 190
VK + + + A L E + +
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSA------LFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 191 LLEEF-----TDGKIIRRFKLPADVRLDDFKTEMEEDGVLTVTFTKPI-------KPKKT 238
EE T ++ + L + + + FT+ + P T
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV---FTQGLNILEWLENPSNT 225
Query: 239 --QQQLIS-----KLLGFLAKAAAAPFAKLNQKS--KLLRVLSAKKLISKLGVLAKAAPV 289
+ L+S L+G + A AKL + +L L S+ G++ A +
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ-GLVT-AVAI 283
Query: 290 CILCGHASSNSGSSNNSNSQR 310
A ++S S + ++
Sbjct: 284 ------AETDSWESFFVSVRK 298
Score = 33.1 bits (75), Expect = 0.12
Identities = 35/280 (12%), Positives = 78/280 (27%), Gaps = 98/280 (35%)
Query: 63 REL-NIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDGVLTVTFTRDAAATANTSS 121
+++ N AD K + F + D V +N + LT+ F
Sbjct: 1643 QDVWNRAD------NHFKDTYGFSILDIV-INNPVN-------LTIHFG-------GEKG 1681
Query: 122 RSVYKKVIAFLNAVIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKM-------I 174
+ + + A + +ET +D + + + + + L +
Sbjct: 1682 KRIRENYSAMI-----FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 175 VLLE---TE--EEEGDTIPEWL-----LEEFT------------DG-KIIR-RFKL---- 206
L+E E + +G + L E+ +++ R
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 207 -PAD-----------VRLDDFKTEMEEDGVLTVTFTKPIKPKKTQ-----------QQLI 243
P D + ++ + V + + + QQ +
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYV--VERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 244 SKLLGFLAKAAAAPFAKLNQKSKLLRVLSAKKL-ISKLGV 282
A A L+ + +L + +K+ I +L
Sbjct: 1855 ------AAGDLRA----LDTVTNVLNFIKLQKIDIIELQK 1884
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 34.5 bits (79), Expect = 0.042
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 54 INDKELTLTR---ELNIADGGTILRRFLKVSRNFDLPDGVKRSNFKSTSMEDGVLTVTFT 110
+ K++ LT+ E+ + G +R RN LP + ++ L ++F
Sbjct: 316 FDKKQVKLTQYGPEVTVEAGD---QR-----RNIFLPPALSGRPITGAKFQNNYLIISFL 367
Query: 111 RDA 113
Sbjct: 368 EHH 370
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding,
apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB:
1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Length = 94
Score = 28.9 bits (65), Expect = 0.64
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 203 RFKLPADVRLDDFKTEMEEDGVLTVTFTKPIKPKKTQQQLISKLLGFLAK 252
R L D++ M DG LT++ + ++ + TQQQ + L+ + K
Sbjct: 15 REALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILK 64
>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase
family 51; 2.50A {Bifidobacterium longum}
Length = 574
Score = 30.7 bits (68), Expect = 0.65
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 2/110 (1%)
Query: 2 SLSINMDLPAFITESSKFIDSSNISTRWEYDGDKIVCKAS-LPAVRMEDVKIDINDKELT 60
+ + + P TE+ + + + W+ + A A + ID++
Sbjct: 445 AYAPAISSPTIHTEAYGDVPAIDAVVTWDEQARTGLLLAVNRDANTPHTLTIDLSGLPGL 504
Query: 61 LTRELNIADGGTILRRFLKVSRN-FDLPDGVKRSNFKSTSMEDGVLTVTF 109
+L N + P+ V G T T
Sbjct: 505 PGLGTLALGKAQLLHEDDPYRTNTAEAPEAVTPQPLDIAMNATGTCTATL 554
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.68
Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 157 KEDVKIEIE--DDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDD 214
+E+ + ++ D +++ E +++ LEE+ + + K + R+ D
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKD--------LEEWNQRQSEQVEKNKINNRIAD 142
Query: 215 --FKTEMEED 222
F + + D
Sbjct: 143 KAFYQQPDAD 152
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.76
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 7/27 (25%)
Query: 263 QKSKLLRVLSAKKLISKLGVLA-KAAP 288
+K L KKL + L + A +AP
Sbjct: 18 EKQAL------KKLQASLKLYADDSAP 38
Score = 28.8 bits (63), Expect = 1.7
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 239 QQQLISKLLGFLAKAA--AAPFAKLN 262
++Q + KL L A +AP +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens}
SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Length = 121
Score = 27.7 bits (61), Expect = 2.7
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 157 KEDVKI-EIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLD 213
V + E++++G K + L E+ + W ++ + ++ P L
Sbjct: 6 SGRVAVEEVDEEG---KFVRLRNKSNEDQS-MGNWQIKRQNGDDPLLTYRFPPKFTLK 59
>1ufg_A Lamin A, nuclear lamin; immunoglobulin like fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, structural protein; NMR {Mus musculus}
SCOP: b.1.16.1
Length = 151
Score = 27.8 bits (61), Expect = 3.2
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 157 KEDVKI-EIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLD 213
V + E++++G K + L E+ + W + + ++ P L
Sbjct: 37 SGRVAVEEVDEEG---KFVRLRNKSNEDQS-MGNWQIRRQNGDDPLMTYRFPPKFTLK 90
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG,
northeas structural genomics consortium, SGC; NMR {Homo
sapiens}
Length = 139
Score = 27.3 bits (60), Expect = 3.8
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 157 KEDVKI-EIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLD 213
V I EI+ +G K + L +++ + W ++ +K L
Sbjct: 21 SGSVSIEEIDLEG---KFVQLKNNSDKDQS-LGNWRIKRQVLEGEEIAYKFTPKYILR 74
>2fbl_A Hypothetical protein NE1496; APC5855, PSI, protein structure
initiative, MCSG, midwest center for structural
genomics; 1.90A {Nitrosomonas europaea} SCOP: d.63.1.2
Length = 153
Score = 26.5 bits (58), Expect = 8.8
Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 25/140 (17%)
Query: 75 RRFLKVSRNFDLPDGVKRSNFKSTSMEDGVLTVTFTRDAAATANTSSRSVYKKVIAFLNA 134
R+FL V + + G LT + +
Sbjct: 8 RKFL-V-------ATFPDGELHAVPLRQGYLTTPTDSIELRLRQQGTEYFMTLKSEGGLS 59
Query: 135 VIYWETSLD----KHVLKASLLPGMKK--------EDVKIEIEDDGAELKMIVLLETE-- 180
+E +D + + A+ ++K + E++ L ++L+E E
Sbjct: 60 RQEYEIQIDVTQFEMLWPATEGRRVEKTRYSGKLPDGQLFELDVFAGHLSPLMLVEVEFL 119
Query: 181 ---EEEGDTIPEWLLEEFTD 197
+ P W EE T+
Sbjct: 120 SEDAAQAFIPPPWFGEEVTE 139
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.362
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,608,093
Number of extensions: 285890
Number of successful extensions: 680
Number of sequences better than 10.0: 1
Number of HSP's gapped: 652
Number of HSP's successfully gapped: 44
Length of query: 310
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 217
Effective length of database: 4,105,140
Effective search space: 890815380
Effective search space used: 890815380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.9 bits)