RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 041271
(310 letters)
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 115
Score = 53.1 bits (127), Expect = 9e-10
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 143 DKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIR 202
+ A L PG+ KED+ + D E++ E I + +I R
Sbjct: 20 QHIKVIAWL-PGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSE---IPEEEEIYR 75
Query: 203 RFKLPADVRLDDFKTEMEEDGVLTVTFTK--PIKPKK 237
KLPA V+ ++ + E+GVL+V K K
Sbjct: 76 TIKLPATVKEENASAKF-ENGVLSVILPKAESSIKKG 111
Score = 43.5 bits (102), Expect = 3e-06
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 32 DGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIADGGTILRRFL-------KVSRNF 84
I A LP V ED+ ++ L + + + R ++ R
Sbjct: 18 GDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTI 77
Query: 85 DLPDGVKRSNFKSTSMEDGVLTVTFTRDAAA 115
LP VK N + E+GVL+V + ++
Sbjct: 78 KLPATVKEENASA-KFENGVLSVILPKAESS 107
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
aestivum) [TaxId: 4565]}
Length = 150
Score = 53.6 bits (128), Expect = 2e-09
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 5/108 (4%)
Query: 130 AFLNAVIYWETSLDKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPE 189
AF NA + W+ + + HV KA L PG+KKE+VK+E+ED ++V E +E+ D +
Sbjct: 39 AFANARMDWKETPEAHVFKADL-PGVKKEEVKVEVEDGN---VLVVSGERTKEKEDKNDK 94
Query: 190 WLLEEFTDGKIIRRFKLPADVRLDDFKTEMEEDGVLTVTFTKPIKPKK 237
W E + GK +RRF+L D ++++ K +E +GVLTVT K K
Sbjct: 95 WHRVERSSGKFVRRFRLLEDAKVEEVKAGLE-NGVLTVTVPKAEVKKP 141
Score = 38.2 bits (88), Expect = 3e-04
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 9 LPAFITESSKFIDSSNISTRWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELNIA 68
+PA S+ +N W+ + V KA LP V+ E+VK+++ D + +
Sbjct: 27 VPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTK 86
Query: 69 DGGTIL-------RRFLKVSRNFDLPDGVKRSNFKSTSMEDGVLTVTFTRDAAA 115
+ R K R F L + K K+ +E+GVLTVT +
Sbjct: 87 EKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKA-GLENGVLTVTVPKAEVK 139
>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase
Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
Length = 270
Score = 28.8 bits (64), Expect = 0.84
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 143 DKHVLKASLLPGMKKEDVKIEIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIR 202
K K + G K V E+ + E G ++ L++ + GK
Sbjct: 193 GKPETKRGKMSGRKN--VLRCTSCHRIEVVPANVQEKTCICGGSMQNLLVKYLSHGKRTS 250
Query: 203 RFKLPADVR 211
+ P ++R
Sbjct: 251 EYPRPKEIR 259
>d1ifca_ b.60.1.2 (A:) Intestinal fatty acid binding protein {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 131
Score = 27.9 bits (62), Expect = 0.86
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 21 DSSNISTRWEYDGDKIVCKASLPAVRMEDVKIDINDKELTLTRELN 66
D + ++ W +G+K+V K K N KEL RE++
Sbjct: 74 DGTELTGTWTMEGNKLVGK----------FKRVDNGKELIAVREIS 109
>d2fbla1 d.63.1.2 (A:2-151) Hypothetical protein NE1496
{Nitrosomonas europaea [TaxId: 915]}
Length = 150
Score = 26.9 bits (59), Expect = 1.8
Identities = 25/142 (17%), Positives = 43/142 (30%), Gaps = 25/142 (17%)
Query: 73 ILRRFLKVSRNFDLPDGVKRSNFKSTSMEDGVLTVTF--TRDAAATANTSSRSVYKKVIA 130
I R+FL V+ PDG + + G LT T K
Sbjct: 3 IERKFL-VA---TFPDGE----LHAVPLRQGYLTTPTDSIELRLRQQGTEYFMTLKSEGG 54
Query: 131 FLNAVIYWETSLD--KHVLKASLLPGMKKEDVKIEIED--------DGAELKMIVLLETE 180
+ + + + A+ ++K ++ D L ++L+E E
Sbjct: 55 LSRQEYEIQIDVTQFEMLWPATEGRRVEKTRYSGKLPDGQLFELDVFAGHLSPLMLVEVE 114
Query: 181 -----EEEGDTIPEWLLEEFTD 197
+ P W EE T+
Sbjct: 115 FLSEDAAQAFIPPPWFGEEVTE 136
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier
protein ThiS {Escherichia coli [TaxId: 562]}
Length = 65
Score = 24.6 bits (54), Expect = 3.9
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 14/67 (20%)
Query: 51 KIDINDKELTLTRELNIADGGTILRRF------LKVSRNFDLPDGVKRSNFKSTSMEDG- 103
+I ND+ + + + +L + ++ N + V R + ++DG
Sbjct: 1 QILFNDQAMQCAAGQTVHE---LLEQLDQRQAGAALAINQQI---VPREQWAQHIVQDGD 54
Query: 104 -VLTVTF 109
+L
Sbjct: 55 QILLFQV 61
>d1ds1a_ b.82.2.2 (A:) Clavaminate synthase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 323
Score = 26.6 bits (58), Expect = 4.1
Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 192 LEEFTDGKIIRRFKLPADVR--LDDFKTEMEEDGVL 225
L F D LP + LD F E EDG L
Sbjct: 27 LYAFLDAAHTAAASLPGALATALDTFNAEGSEDGHL 62
>d1sp8a2 d.32.1.3 (A:208-431) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Corn (Zea mays) [TaxId: 4577]}
Length = 224
Score = 25.8 bits (56), Expect = 6.0
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 163 EIEDDGAELKMIVLLETEEEEGDTIPEWLLEEFTDGKIIRRFKLPADVRLDDFKTEMEED 222
E++ A + + D + + T+ +I + + ++
Sbjct: 108 EMQARSAMGGFEFMAPPTSDYYDGVRRRAGDVLTEAQIKE-------CQELGVLVDRDDQ 160
Query: 223 GVLTVTFTKPIKPKKT 238
GVL FTKP+ + T
Sbjct: 161 GVLLQIFTKPVGDRPT 176
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase
LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 170
Score = 25.8 bits (56), Expect = 6.4
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 163 EIEDDGAELKMIVLLETEEE--EGDTIPEWLL 192
+ + +I ET + D +P LL
Sbjct: 139 MVLTSKKGVFLIRERETYADLIAKDIVPPHLL 170
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.362
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,101,504
Number of extensions: 52676
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 23
Length of query: 310
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,240,546
Effective search space: 279122850
Effective search space used: 279122850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)