BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041272
(267 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255544606|ref|XP_002513364.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus
communis]
gi|223547272|gb|EEF48767.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus
communis]
Length = 286
Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 140/187 (74%), Positives = 163/187 (87%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ VWKHV++KGDTVVDATCGNG+DTL +LKMVADES G VYG+DIQS+AL +TSS
Sbjct: 80 TEVAHLVWKHVLQKGDTVVDATCGNGHDTLALLKMVADESGNGHVYGMDIQSDALDNTSS 139
Query: 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
LLD+T + EK LVKLF++CHSRMEEIVP++T VRLVAFNLGYLPGGDK++ T E T +
Sbjct: 140 LLDETVTSEEKELVKLFSICHSRMEEIVPENTPVRLVAFNLGYLPGGDKAITTVPEKTLL 199
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
ALEAA+R+L+PGGLIS+VVYVGHPGGREELE VE FA L VDDWICCKFQMLNRP+APV
Sbjct: 200 ALEAAKRVLMPGGLISLVVYVGHPGGREELETVETFASGLPVDDWICCKFQMLNRPVAPV 259
Query: 261 LVFLFKR 267
+ FLFKR
Sbjct: 260 VAFLFKR 266
>gi|224094180|ref|XP_002310087.1| predicted protein [Populus trichocarpa]
gi|222852990|gb|EEE90537.1| predicted protein [Populus trichocarpa]
Length = 203
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 141/187 (75%), Positives = 162/187 (86%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ +WK VV+ GDTV+DATCGNGYDTL MLKMVADE G VYG+DIQ +ALK TSS
Sbjct: 17 TEVAHLIWKRVVQNGDTVIDATCGNGYDTLAMLKMVADELGRGRVYGMDIQGDALKRTSS 76
Query: 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
LLD++ + EK LVKLF++CHSRMEEIVP ++ VRLVAFNLGYLPGGDK++ T SETT++
Sbjct: 77 LLDESVTLKEKELVKLFSICHSRMEEIVPANSPVRLVAFNLGYLPGGDKTITTASETTQL 136
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
ALEAA++ILIPGGLIS+VVYVGHPGG EELE VEAFA LSVD+WICCKFQMLNRPLAPV
Sbjct: 137 ALEAAKKILIPGGLISLVVYVGHPGGMEELETVEAFASGLSVDNWICCKFQMLNRPLAPV 196
Query: 261 LVFLFKR 267
LV LFKR
Sbjct: 197 LVLLFKR 203
>gi|359494606|ref|XP_002263914.2| PREDICTED: putative rRNA methylase ytqB [Vitis vinifera]
Length = 215
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 138/187 (73%), Positives = 162/187 (86%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ VWKHVV+KGDTVVDATCGNGYDTL MLKMVAD S GCVYG+DIQ +AL++TSS
Sbjct: 29 TRVAHLVWKHVVQKGDTVVDATCGNGYDTLAMLKMVADGSGRGCVYGMDIQKDALENTSS 88
Query: 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
LL+++ + EK LVKLF +CHSRMEE+VPKST +RLVAFNLGYLPGGDK V TTS TT +
Sbjct: 89 LLNESVNPIEKELVKLFTICHSRMEEVVPKSTTLRLVAFNLGYLPGGDKEVTTTSATTIL 148
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
AL+AA RIL GGLIS++VYVGHPGGR+ELE ++AFA LSV+DW+C +FQMLNRPLAPV
Sbjct: 149 ALQAATRILASGGLISLIVYVGHPGGRDELETIQAFASELSVEDWVCSEFQMLNRPLAPV 208
Query: 261 LVFLFKR 267
L+FLFKR
Sbjct: 209 LIFLFKR 215
>gi|297736150|emb|CBI24188.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 138/187 (73%), Positives = 162/187 (86%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ VWKHVV+KGDTVVDATCGNGYDTL MLKMVAD S GCVYG+DIQ +AL++TSS
Sbjct: 73 TRVAHLVWKHVVQKGDTVVDATCGNGYDTLAMLKMVADGSGRGCVYGMDIQKDALENTSS 132
Query: 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
LL+++ + EK LVKLF +CHSRMEE+VPKST +RLVAFNLGYLPGGDK V TTS TT +
Sbjct: 133 LLNESVNPIEKELVKLFTICHSRMEEVVPKSTTLRLVAFNLGYLPGGDKEVTTTSATTIL 192
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
AL+AA RIL GGLIS++VYVGHPGGR+ELE ++AFA LSV+DW+C +FQMLNRPLAPV
Sbjct: 193 ALQAATRILASGGLISLIVYVGHPGGRDELETIQAFASELSVEDWVCSEFQMLNRPLAPV 252
Query: 261 LVFLFKR 267
L+FLFKR
Sbjct: 253 LIFLFKR 259
>gi|356557016|ref|XP_003546814.1| PREDICTED: putative rRNA methylase ytqB-like [Glycine max]
Length = 285
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/209 (65%), Positives = 166/209 (79%), Gaps = 12/209 (5%)
Query: 71 KDSPLSG---TLI---------TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVAD 118
KDSP SG L+ T A+ VWKHVV+KGDTV+DATCGNG+DTL ML +VAD
Sbjct: 77 KDSPFSGLEDALVSYLFGKKRATDIAHMVWKHVVQKGDTVIDATCGNGFDTLAMLNLVAD 136
Query: 119 ESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA 178
+S GCVY LDIQ +AL +TS LL+++ + EK LVKLFN+CHS+ME VP++ + RLVA
Sbjct: 137 DSHNGCVYALDIQKDALDNTSLLLEESLNPNEKQLVKLFNICHSKMENAVPRNASFRLVA 196
Query: 179 FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFAR 238
FNLGYLPGGDK +IT S+TT +ALEAA+RIL+PGGLIS+VVYVGHPGGREELE VE+FA
Sbjct: 197 FNLGYLPGGDKEIITRSKTTLLALEAAKRILMPGGLISIVVYVGHPGGREELEVVESFAG 256
Query: 239 SLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L V++WICCK QMLNRP AP+ +FLFKR
Sbjct: 257 RLCVENWICCKLQMLNRPCAPIPIFLFKR 285
>gi|147801353|emb|CAN63608.1| hypothetical protein VITISV_019132 [Vitis vinifera]
Length = 285
Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 132/181 (72%), Positives = 155/181 (85%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ VWKHVV+KGDTVVDATCGNGYDTL MLKMVAD S GCVYG+DIQ +AL++TSS
Sbjct: 73 TRVAHLVWKHVVQKGDTVVDATCGNGYDTLAMLKMVADGSGRGCVYGMDIQKDALENTSS 132
Query: 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
LL+++ + EK LVKLF +CHSRMEE+VPKST +RLVAFNLGYLPGGDK V TTS TT +
Sbjct: 133 LLNESVNPIEKELVKLFTICHSRMEEVVPKSTTLRLVAFNLGYLPGGDKEVTTTSATTIL 192
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
AL+AA RIL GGLIS++VYVGHPGGR+ELE ++AFA LSV+DW+C +FQMLNRPLAP
Sbjct: 193 ALQAATRILASGGLISLIVYVGHPGGRDELETIQAFASELSVEDWVCSEFQMLNRPLAPE 252
Query: 261 L 261
L
Sbjct: 253 L 253
>gi|30684861|ref|NP_683312.2| S-adenosyl-L-methionine-dependent methyltransferase
domain-containing protein [Arabidopsis thaliana]
gi|26983794|gb|AAN86149.1| unknown protein [Arabidopsis thaliana]
gi|332191331|gb|AEE29452.1| S-adenosyl-L-methionine-dependent methyltransferase
domain-containing protein [Arabidopsis thaliana]
Length = 274
Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 151/259 (58%), Positives = 182/259 (70%), Gaps = 14/259 (5%)
Query: 17 SFAIP-RNTLLPFPAAALSKANVNVLRFSSSCCSAASFQQKQSCSTNNCTPLPLCKDSPL 75
S+++P R TL+ F + N LR SC A+F S S N P+ +D
Sbjct: 20 SYSLPIRKTLMTFDFRIAMQRN-PCLRIRRSC--VAAFSSTPSHSRN--FPIRGLEDV-F 73
Query: 76 SGTLI-----TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSA--GCVYGL 128
G L T A+ VW+ V++KGDTV+DATCGNG DTL MLKMV +S G VY +
Sbjct: 74 VGYLFGRKKATEVAHVVWEQVIQKGDTVIDATCGNGNDTLAMLKMVMHDSVGCGGYVYAM 133
Query: 129 DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGD 188
DIQ +A++STSSLLD+ EK VKLFN+CHS+M EIVP++ VR+VAFNLGYLPGG+
Sbjct: 134 DIQKDAIESTSSLLDQAVGSKEKECVKLFNLCHSKMGEIVPENARVRMVAFNLGYLPGGN 193
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
KS+IT S+TT AL+AAERIL PGGLIS+VVY+GHPGGREELE VEAF L V DWICC
Sbjct: 194 KSIITLSDTTLSALKAAERILKPGGLISLVVYIGHPGGREELEVVEAFGSGLPVSDWICC 253
Query: 249 KFQMLNRPLAPVLVFLFKR 267
KFQMLNRPLAPVLVF+FKR
Sbjct: 254 KFQMLNRPLAPVLVFMFKR 272
>gi|297844572|ref|XP_002890167.1| hypothetical protein ARALYDRAFT_471841 [Arabidopsis lyrata subsp.
lyrata]
gi|297336009|gb|EFH66426.1| hypothetical protein ARALYDRAFT_471841 [Arabidopsis lyrata subsp.
lyrata]
Length = 274
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 129/189 (68%), Positives = 156/189 (82%), Gaps = 2/189 (1%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSA--GCVYGLDIQSEALKST 138
T A+ VW+ V++KGD V+DATCGNG DTL MLKMV ++S G VY +DIQ +A++ST
Sbjct: 84 TEVAHVVWEQVIQKGDMVIDATCGNGNDTLAMLKMVMNDSVGCGGYVYAMDIQKDAIEST 143
Query: 139 SSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETT 198
SSLLD+ EK VKLFN+CHS+M EIVP+++ VR+VAFNLGYLPGG+KS+IT S+TT
Sbjct: 144 SSLLDQAVGSKEKECVKLFNICHSKMGEIVPENSRVRMVAFNLGYLPGGNKSIITVSDTT 203
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
AL+AAERIL+PGGLIS+VVY+GHPGGREELE VEAF L V DW+CCKFQMLNRPLA
Sbjct: 204 LSALKAAERILMPGGLISLVVYIGHPGGREELEVVEAFGSGLPVSDWVCCKFQMLNRPLA 263
Query: 259 PVLVFLFKR 267
PVLVF+FKR
Sbjct: 264 PVLVFMFKR 272
>gi|449444276|ref|XP_004139901.1| PREDICTED: putative rRNA methylase YtqB-like [Cucumis sativus]
gi|449516207|ref|XP_004165139.1| PREDICTED: putative rRNA methylase YtqB-like [Cucumis sativus]
Length = 265
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 127/187 (67%), Positives = 157/187 (83%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ VWK +V+KGDTVVDATCGNGYDTL M+KMVADES + VY +D+Q+EAL+STS+
Sbjct: 79 TEVAHSVWKCIVKKGDTVVDATCGNGYDTLAMVKMVADESGSARVYAMDVQNEALESTSA 138
Query: 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
LLD++ S+ EK LVKL ++CHSRME+++ + + V LVAFNLGYLPGG+K++ T SETT
Sbjct: 139 LLDESLSEKEKKLVKLSSICHSRMEDVILEDSPVSLVAFNLGYLPGGNKAITTKSETTFQ 198
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
AL+AA RIL PGGLIS+VVYVGHPGG EELE +E F+ L+V++WICCK QMLNRPLAPV
Sbjct: 199 ALKAAHRILKPGGLISLVVYVGHPGGMEELETIEKFSSDLAVENWICCKLQMLNRPLAPV 258
Query: 261 LVFLFKR 267
VFLFKR
Sbjct: 259 PVFLFKR 265
>gi|242091049|ref|XP_002441357.1| hypothetical protein SORBIDRAFT_09g025160 [Sorghum bicolor]
gi|241946642|gb|EES19787.1| hypothetical protein SORBIDRAFT_09g025160 [Sorghum bicolor]
Length = 272
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 122/188 (64%), Positives = 152/188 (80%), Gaps = 1/188 (0%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ VW+++V+KGDTVVDATCGNG DTL +LKMVADE++ G VYG+DIQ A++STSS
Sbjct: 85 TEVAHAVWRNIVQKGDTVVDATCGNGNDTLALLKMVADETAQGRVYGMDIQDSAIESTSS 144
Query: 141 LLDKTTSK-AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTK 199
L + ++GLVKLF +CHSRMEEIVPK VRLVAFNLGYLPGGDK+VIT TT+
Sbjct: 145 FLKMSVDDDHQRGLVKLFPICHSRMEEIVPKDAPVRLVAFNLGYLPGGDKTVITVPRTTE 204
Query: 200 MALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
+AL+AA ++L GGLIS++VY+GHPGGR+EL+ VE+FA SL VD W CK QMLNRP+AP
Sbjct: 205 LALQAASKLLSSGGLISVLVYIGHPGGRDELDVVESFASSLPVDTWATCKLQMLNRPIAP 264
Query: 260 VLVFLFKR 267
VL+ L K+
Sbjct: 265 VLILLNKK 272
>gi|115464835|ref|NP_001056017.1| Os05g0511700 [Oryza sativa Japonica Group]
gi|113579568|dbj|BAF17931.1| Os05g0511700 [Oryza sativa Japonica Group]
gi|218197087|gb|EEC79514.1| hypothetical protein OsI_20592 [Oryza sativa Indica Group]
gi|222632196|gb|EEE64328.1| hypothetical protein OsJ_19168 [Oryza sativa Japonica Group]
Length = 260
Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 120/184 (65%), Positives = 146/184 (79%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VW+ +VRKGDTVVDATCGNG DT MLKMVADE G VYGLDIQ A+ STSS L
Sbjct: 77 AHAVWRSIVRKGDTVVDATCGNGNDTFAMLKMVADERVQGRVYGLDIQESAIASTSSFLK 136
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ E LVKLF +CHSRMEE+VPK VRLVAFNLGYLPGGDK++IT +TT++AL+
Sbjct: 137 MAVNSHELELVKLFTICHSRMEEVVPKDFPVRLVAFNLGYLPGGDKTIITVPKTTELALQ 196
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
AA I+ GGLIS++VY+GHPGGR+EL+ VE+FA SL +D W+ CKF+MLNRP APVL+
Sbjct: 197 AASSIVSSGGLISVLVYIGHPGGRDELDVVESFASSLPIDTWMSCKFEMLNRPAAPVLIL 256
Query: 264 LFKR 267
L+K+
Sbjct: 257 LYKK 260
>gi|326500516|dbj|BAK06347.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 259
Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 119/187 (63%), Positives = 151/187 (80%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ VW+ +VRKGDTVVDATCGNG DT +LKMV+DE+ G VYG+DIQ A+ +TSS
Sbjct: 73 TEVAHAVWRSIVRKGDTVVDATCGNGNDTFALLKMVSDETGRGRVYGMDIQDSAIDNTSS 132
Query: 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
L+ EK LVKLF++CHSRME+IVPK + VRLVAFNLGYLPGGDK++IT +TT++
Sbjct: 133 FLNMAVDTHEKELVKLFSICHSRMEDIVPKGSPVRLVAFNLGYLPGGDKTIITVPKTTEL 192
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
AL+AA RI+ GGLIS++VY+GH GGR+EL+ VE+FA SL VD W+ CKF+M+NRP+APV
Sbjct: 193 ALQAASRIVSSGGLISVLVYIGHLGGRDELDIVESFASSLPVDTWVSCKFEMVNRPVAPV 252
Query: 261 LVFLFKR 267
LV L K+
Sbjct: 253 LVLLHKK 259
>gi|357133042|ref|XP_003568137.1| PREDICTED: putative rRNA methylase ytqB-like [Brachypodium
distachyon]
Length = 261
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 120/187 (64%), Positives = 148/187 (79%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ VW+ +VRKGDTVVDATCGNG DT +LKMVADE G VYG+DIQ A+ STSS
Sbjct: 75 TEVAHSVWRSIVRKGDTVVDATCGNGNDTFALLKMVADERGQGRVYGMDIQDSAIDSTSS 134
Query: 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
L+ E LVKLF++CHSRME+IVPK + VRLVAFNLGYLPGGDK++IT TT++
Sbjct: 135 FLEMAVDSHEMELVKLFSVCHSRMEDIVPKDSPVRLVAFNLGYLPGGDKTIITIPRTTEL 194
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
AL+AA RI+ GGLIS++VY+GH GGR+EL+ VE+FA SL VD W+ CKF+M+NRP+APV
Sbjct: 195 ALQAASRIVSSGGLISVLVYIGHLGGRDELDIVESFASSLPVDTWVSCKFEMINRPVAPV 254
Query: 261 LVFLFKR 267
LV L K+
Sbjct: 255 LVLLHKK 261
>gi|294464647|gb|ADE77832.1| unknown [Picea sitchensis]
Length = 187
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/181 (58%), Positives = 137/181 (75%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
VW+HVVR GD V+DATCGNG+DTL + KMV ES G +YG+D+Q AL++TS LLD T
Sbjct: 7 VWRHVVRGGDFVIDATCGNGHDTLALAKMVCTESRKGLIYGMDVQQSALQNTSCLLDSTL 66
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
S E+ V+LF +CHSRME+I+PK + RLVAFNLGYLPGG K +IT SETT +AL+AA
Sbjct: 67 SPNERQHVRLFPLCHSRMEDILPKGLSARLVAFNLGYLPGGSKELITRSETTLLALDAAA 126
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
++L GGLIS++ Y+GH GGREE E V +FA L W+ ++++LNRP PVL+FLF+
Sbjct: 127 KVLGSGGLISVMSYIGHRGGREEYETVRSFATKLPTTTWVSSEYEILNRPSGPVLIFLFR 186
Query: 267 R 267
R
Sbjct: 187 R 187
>gi|4966367|gb|AAD34698.1|AC006341_26 Similar to gi|2293301 YtqB from Bacillus subtilis sequence
gb|AF008220 [Arabidopsis thaliana]
Length = 160
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/158 (70%), Positives = 129/158 (81%), Gaps = 2/158 (1%)
Query: 112 MLKMVADESSA--GCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169
MLKMV +S G VY +DIQ +A++STSSLLD+ EK VKLFN+CHS+M EIVP
Sbjct: 1 MLKMVMHDSVGCGGYVYAMDIQKDAIESTSSLLDQAVGSKEKECVKLFNLCHSKMGEIVP 60
Query: 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREE 229
++ VR+VAFNLGYLPGG+KS+IT S+TT AL+AAERIL PGGLIS+VVY+GHPGGREE
Sbjct: 61 ENARVRMVAFNLGYLPGGNKSIITLSDTTLSALKAAERILKPGGLISLVVYIGHPGGREE 120
Query: 230 LEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
LE VEAF L V DWICCKFQMLNRPLAPVLVF+FKR
Sbjct: 121 LEVVEAFGSGLPVSDWICCKFQMLNRPLAPVLVFMFKR 158
>gi|48475074|gb|AAT44143.1| unknown protein, similar to rRNA methylase [Oryza sativa Japonica
Group]
Length = 153
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 97/153 (63%), Positives = 120/153 (78%)
Query: 115 MVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174
MVADE G VYGLDIQ A+ STSS L + E LVKLF +CHSRMEE+VPK V
Sbjct: 1 MVADERVQGRVYGLDIQESAIASTSSFLKMAVNSHELELVKLFTICHSRMEEVVPKDFPV 60
Query: 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVE 234
RLVAFNLGYLPGGDK++IT +TT++AL+AA I+ GGLIS++VY+GHPGGR+EL+ VE
Sbjct: 61 RLVAFNLGYLPGGDKTIITVPKTTELALQAASSIVSSGGLISVLVYIGHPGGRDELDVVE 120
Query: 235 AFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+FA SL +D W+ CKF+MLNRP APVL+ L+K+
Sbjct: 121 SFASSLPIDTWMSCKFEMLNRPAAPVLILLYKK 153
>gi|413945998|gb|AFW78647.1| hypothetical protein ZEAMMB73_301644 [Zea mays]
Length = 183
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/148 (65%), Positives = 118/148 (79%), Gaps = 1/148 (0%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
T A+ W+++V+KGDTVVDATCGNG DTL +LKMVADE+ G VYG+DIQ A+++TSS
Sbjct: 36 TEVAHAFWRNIVQKGDTVVDATCGNGNDTLALLKMVADETGRGRVYGMDIQDSAIENTSS 95
Query: 141 LLD-KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTK 199
L + ++GLVKLF +CHSRMEEIVPK VRLVAFNLGYLPGGDK+VIT TT+
Sbjct: 96 FLKMAVDDEHQRGLVKLFPICHSRMEEIVPKDAPVRLVAFNLGYLPGGDKTVITVPRTTE 155
Query: 200 MALEAAERILIPGGLISMVVYVGHPGGR 227
+AL AA RIL GGLIS++VY+GHPGGR
Sbjct: 156 LALRAASRILSSGGLISVLVYIGHPGGR 183
>gi|302786828|ref|XP_002975185.1| hypothetical protein SELMODRAFT_57713 [Selaginella moellendorffii]
gi|300157344|gb|EFJ23970.1| hypothetical protein SELMODRAFT_57713 [Selaginella moellendorffii]
Length = 184
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 95/184 (51%), Positives = 127/184 (69%), Gaps = 1/184 (0%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A VWK +VR GDTVVD TCGNG DTL++ ++V+ S G VYG DIQ EAL+ TS LL+
Sbjct: 2 ARSVWKRIVRPGDTVVDTTCGNGIDTLLLARLVSPGSLLGRVYGFDIQKEALERTSLLLE 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + ++ V+LF CHS+M E++ K RLV +NLGYLP GDK +IT + TT +L
Sbjct: 62 QHLTPEQRNRVELFQDCHSKMGEVL-KDVRARLVVYNLGYLPHGDKELITRAPTTIQSLH 120
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ +L PGGL+S++ YVGHPGG+EE EAV+ FA L +WIC + L+RPLAP L+
Sbjct: 121 CSLDLLQPGGLVSVICYVGHPGGQEEYEAVKEFASLLPPSEWICTHLEQLHRPLAPHLIL 180
Query: 264 LFKR 267
L K+
Sbjct: 181 LAKK 184
>gi|384251727|gb|EIE25204.1| hypothetical protein COCSUDRAFT_65151 [Coccomyxa subellipsoidea
C-169]
Length = 336
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 123/193 (63%), Gaps = 6/193 (3%)
Query: 75 LSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA 134
L G +T A G W H VR+GDTVVDATCGNG D+ + + + + G + DIQ +A
Sbjct: 149 LRGARVTSLAQGEWHHFVREGDTVVDATCGNGNDSKWLAEKIGPK---GQLVAFDIQEDA 205
Query: 135 LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITT 194
++STS++L+ V+ + CHS++EE V A R V FNLG+LPGGD+S+I+
Sbjct: 206 IRSTSAVLEDEVDPELLPTVRFVHGCHSKLEEHV---QAARFVCFNLGFLPGGDRSIISQ 262
Query: 195 SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN 254
T+ A++AA IL PGG+IS++ YVGHPGG EE AV+ A + ++ + ++LN
Sbjct: 263 PATSVAAVKAAMNILEPGGIISVLAYVGHPGGMEEYRAVQEMATQVHPQEFTVLEQRILN 322
Query: 255 RPLAPVLVFLFKR 267
RP +PVL+ L++R
Sbjct: 323 RPNSPVLIMLWRR 335
>gi|168027071|ref|XP_001766054.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682697|gb|EDQ69113.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 152
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 106/153 (69%), Gaps = 1/153 (0%)
Query: 115 MVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174
MV +++ G VY D+Q +AL ++S LLD+ ++ VKL +CHS++E IV + T +
Sbjct: 1 MVCADNALGYVYAFDVQEDALANSSYLLDQRLDSVQRKRVKLLRLCHSQLENIVGE-TPI 59
Query: 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVE 234
RLV FNLGYLPGGD +V+T +TT AL+++ +L GGLIS+V YVGHPGGREE +AV
Sbjct: 60 RLVTFNLGYLPGGDHNVVTNVDTTIQALQSSSNVLQSGGLISVVAYVGHPGGREEYDAVM 119
Query: 235 AFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
F L + W+C + + +NRPL+P L+ +FKR
Sbjct: 120 DFGSKLPKNTWVCSQHEWVNRPLSPRLILMFKR 152
>gi|410464458|ref|ZP_11317890.1| Putative rRNA methylase [Desulfovibrio magneticus str. Maddingley
MBC34]
gi|409982421|gb|EKO38878.1| Putative rRNA methylase [Desulfovibrio magneticus str. Maddingley
MBC34]
Length = 209
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 118/183 (64%), Gaps = 8/183 (4%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ V+R GD VDAT GNG+DT ++ ++V +G V+G D+Q+EA++S LL
Sbjct: 15 ILAEVLRPGDLAVDATVGNGHDTALLARLV---GPSGLVHGFDVQAEAIESAGRLL-AAV 70
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEA 204
AE+ V+L+ + H R+ E++P++ R A FNLGYLPGGD++ +T ETT ALEA
Sbjct: 71 GLAER--VRLYALGHERLAEVLPQADHGRAAAVVFNLGYLPGGDETRVTRPETTLAALEA 128
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
+ +IL PGG+I++ Y GH GG EE +AV A+ RSL W +++++N+P P++ F+
Sbjct: 129 SRKILAPGGVIALACYGGHSGGAEETQAVAAWCRSLPFAGWRVARYELINKPGGPIVAFI 188
Query: 265 FKR 267
+
Sbjct: 189 AHK 191
>gi|282889803|ref|ZP_06298342.1| hypothetical protein pah_c004o195 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175913|ref|YP_004652723.1| rRNA methylase [Parachlamydia acanthamoebae UV-7]
gi|281500377|gb|EFB42657.1| hypothetical protein pah_c004o195 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480271|emb|CCB86869.1| hypothetical rRNA methylase [Parachlamydia acanthamoebae UV-7]
Length = 204
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 118/195 (60%), Gaps = 8/195 (4%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
PL + + +A N WK +V GDTV+DATCGNG+DTL++ K+V D SS+GCV G+D+Q +
Sbjct: 6 PLFQSHLDVAHNH-WKKLVNPGDTVIDATCGNGHDTLILAKLVLD-SSSGCVIGMDVQPQ 63
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST--AVRLVAFNLGYLPGGDKSV 191
A+ +T L K S + + L CHS I P T +V+L+ +NLGYLP DKS+
Sbjct: 64 AIAATREKLAKELSANQMERLHLHCACHS----IFPIQTENSVQLIVYNLGYLPKSDKSL 119
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
T TT ++L+AA ++ PGG +S+ Y GH G+ E EA+ F + L +W C
Sbjct: 120 TTCVNTTLISLQAALSLIAPGGAVSLTCYPGHEEGKREEEAILNFVQKLRPQEWSCSYQT 179
Query: 252 MLNRPLAPVLVFLFK 266
+NR AP L+ + K
Sbjct: 180 WVNRQKAPGLLLIQK 194
>gi|302832722|ref|XP_002947925.1| hypothetical protein VOLCADRAFT_88325 [Volvox carteri f.
nagariensis]
gi|300266727|gb|EFJ50913.1| hypothetical protein VOLCADRAFT_88325 [Volvox carteri f.
nagariensis]
Length = 425
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 106/171 (61%), Gaps = 8/171 (4%)
Query: 79 LITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST 138
L+T VW V++ GDT VDATCGNG+DTL + + V G V+G DIQ A+ +T
Sbjct: 6 LLTKTPQAVWAQVLQPGDTAVDATCGNGHDTLFLAQAVGPR---GHVHGFDIQDAAISAT 62
Query: 139 SSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPG-GDKSVITTSET 197
++ + + + + L + CHS + E+ S R+VAFNLGYLPG GDK VIT +++
Sbjct: 63 RERVEAHLTASSRPTITLHHTCHSGLRELC-GSGVARVVAFNLGYLPGTGDKRVITATQS 121
Query: 198 TKMALEAAERIL---IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDW 245
T A+EAA ++ +PGG+IS++ YVGHPGG+EE EAV LS W
Sbjct: 122 TVAAVEAALEVVCVVMPGGIISILAYVGHPGGQEEYEAVGRLVSELSPSYW 172
>gi|239905436|ref|YP_002952175.1| hypothetical protein DMR_07980 [Desulfovibrio magneticus RS-1]
gi|239795300|dbj|BAH74289.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 209
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 111/178 (62%), Gaps = 8/178 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
VR GD VDAT GNG+DT ++ ++V +G V+G D+Q+EA+ S LL AE+
Sbjct: 20 VRPGDLAVDATVGNGHDTALLARLV---GPSGLVHGFDVQAEAIASAERLL-AAAGLAER 75
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L + H R+ E++P++ R A FNLGYLPGGD++ T +TT ALEA+ IL
Sbjct: 76 --VRLHVLGHERLAEVLPEADHGRATAVVFNLGYLPGGDETRTTRPQTTLAALEASREIL 133
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
PGG+I++ Y GH GG EE EAV A+ RSL W +++++N+P P++ + +
Sbjct: 134 APGGVIALACYGGHAGGAEETEAVAAWCRSLPFAGWRVARYELINKPGGPIVAVIAHK 191
>gi|326803839|ref|YP_004321657.1| putative rRNA methylase [Aerococcus urinae ACS-120-V-Col10a]
gi|326650099|gb|AEA00282.1| putative rRNA methylase [Aerococcus urinae ACS-120-V-Col10a]
Length = 188
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 115/184 (62%), Gaps = 6/184 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + K ++ G T +DAT GNG+DTL++ ++V +G VYG D+Q +A+++T +LL+
Sbjct: 9 SHHIIKGHLQTGMTALDATIGNGHDTLLLAQIVG---QSGQVYGFDLQKQAIRATQALLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K + + V L++ H+++ + + + LV FNLGYLP GDKS+IT E+T A+E
Sbjct: 66 KHHCQEQ---VSLYHDSHAKISQYLKADDYLDLVIFNLGYLPKGDKSIITKPESTIPAIE 122
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
++ L PGG++ + Y+GHPGGREE A++ F + D + F+ LN+ P +F
Sbjct: 123 SSLSRLNPGGILLVAAYLGHPGGREEASAIQDFLSQIDQDQYSASHFEFLNQKHLPPKLF 182
Query: 264 LFKR 267
L +R
Sbjct: 183 LVER 186
>gi|227510589|ref|ZP_03940638.1| rRNA methylase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
gi|227190241|gb|EEI70308.1| rRNA methylase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
Length = 191
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 107/181 (59%), Gaps = 5/181 (2%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K V GD V+D T GNG DTL++ K+V + G VYG DIQ +AL+ T SLL K
Sbjct: 14 LLKEAVSTGDQVIDGTIGNGNDTLLLAKLVGEN---GTVYGFDIQQQALQHTISLLKKNL 70
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
S + V+L+ H+ ++ I+ + + FNLGYLPGGDKS+IT S +T AL A
Sbjct: 71 SSLQN--VQLYKKSHAEIDNILDDNVRISAAIFNLGYLPGGDKSIITKSTSTLTALTACL 128
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
+ L GGL+ MV+Y GHPGG++E ++V F ++L ++ + +N+ P V +
Sbjct: 129 KKLQIGGLVVMVIYYGHPGGKKEEKSVVNFCQNLPQKNFAVLNYSFVNQAHEPPFVLAIQ 188
Query: 267 R 267
+
Sbjct: 189 K 189
>gi|147677534|ref|YP_001211749.1| tRNA(1-methyladenosine) methyltransferase and related
methyltransferases [Pelotomaculum thermopropionicum SI]
gi|146273631|dbj|BAF59380.1| tRNA(1-methyladenosine) methyltransferase and related
methyltransferases [Pelotomaculum thermopropionicum SI]
Length = 192
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 103/176 (58%), Gaps = 9/176 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
VR G T VDAT GNG DTL + +V E G VY DIQ +AL++T S L+K
Sbjct: 20 VRNGGTAVDATAGNGNDTLFLAGLVGPE---GLVYAFDIQEKALQATRSALEKA---GMS 73
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
G V L H ME+IV V V FNLGYLPGG+ SV T TT AL+AA +L P
Sbjct: 74 GRVVLVRAGHEEMEKIV--RGPVDAVIFNLGYLPGGEHSVTTRPGTTVRALQAALNLLRP 131
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFLFK 266
GG + +VVY GHPGGREE +AVE A SL + + + +NR APV+V + K
Sbjct: 132 GGRVGVVVYTGHPGGREECDAVEKMASSLDGNLYNVIRINFINRSGAAPVVVVIEK 187
>gi|373466151|ref|ZP_09557563.1| putative rRNA methylase [Lactobacillus kisonensis F0435]
gi|371756954|gb|EHO45754.1| putative rRNA methylase [Lactobacillus kisonensis F0435]
Length = 191
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V+ GDTVVD T GNG+DTL + +V + G +YG DIQ+ A+K+T LL E
Sbjct: 19 VKSGDTVVDCTVGNGHDTLFLANLVGPQ---GTIYGFDIQASAIKNTRRLLANNHVNLEN 75
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V L+N+ HS ++EI+P T + FNLGYLPGGDK+++T SETT A++ L
Sbjct: 76 --VYLYNLSHSLVDEILPYETTIAGAIFNLGYLPGGDKTIVTYSETTIKAIQGCLSRLCK 133
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
G++ +V+Y GHPGG +E + V F + L + ++ +N+ P V + +R
Sbjct: 134 NGIVVLVIYYGHPGGEKEKKDVLEFGKHLDQKRYNVLTYKFINQQHWPPFVMVIQR 189
>gi|297621034|ref|YP_003709171.1| rRNA methylase [Waddlia chondrophila WSU 86-1044]
gi|297376335|gb|ADI38165.1| putative rRNA methylase [Waddlia chondrophila WSU 86-1044]
gi|337293151|emb|CCB91142.1| hypothetical rRNA methylase [Waddlia chondrophila 2032/99]
Length = 204
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 116/196 (59%), Gaps = 7/196 (3%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
PL + I +A + WK +V+ GD V+DATCGNG+DTL++ ++ S G +Y D+Q +
Sbjct: 6 PLFHSHIDLA-HKHWKSLVKPGDIVIDATCGNGHDTLVLAQLALTVES-GKLYACDLQKD 63
Query: 134 ALKST-SSLLDKTTSKAEKGLVKLFNMCHSRM-EEIVPKSTAVRLVAFNLGYLPGGDKSV 191
A+ ST SLL+K K + + + CHS +EI P S VRL A+NLGYLPGGDK+
Sbjct: 64 AINSTKQSLLEKLEKKIVERIF-FVHGCHSSFPDEIQPNS--VRLAAYNLGYLPGGDKAK 120
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
T +ETT +++ A + GG++S+ Y GH G+ E + + FA L W C +
Sbjct: 121 TTQTETTLQSIQKALEAVQDGGMVSITCYPGHTEGKREEKHILEFASKLDPKRWSLCHHR 180
Query: 252 MLNRPLAPVLVFLFKR 267
LNR AP L+ + KR
Sbjct: 181 WLNRSKAPSLLLIQKR 196
>gi|345303462|ref|YP_004825364.1| rRNA methylase [Rhodothermus marinus SG0.5JP17-172]
gi|345112695|gb|AEN73527.1| rRNA methylase [Rhodothermus marinus SG0.5JP17-172]
Length = 202
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 111/192 (57%), Gaps = 20/192 (10%)
Query: 72 DSP--LSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLD 129
D P L GT + A+ + V++ G+ VDAT GNG+DTL + + V + G VYG D
Sbjct: 7 DRPFFLEGTAL---AHRIVTSVLQPGEVAVDATVGNGHDTLFLARQVGPQ---GHVYGFD 60
Query: 130 IQSEALKSTSSLLDKTTSKAEKGL---VKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYL 184
+Q EAL T L+ E GL V L M H M + VP + R+ V FNLGYL
Sbjct: 61 VQEEALARTRRRLE------EAGLHERVTLLRMGHEHMAKAVPAAWHGRIGAVMFNLGYL 114
Query: 185 PGG-DKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVD 243
PGG D+S IT +TT ALEAA R+L PGG++++V Y GHPGG EE EAV +A L D
Sbjct: 115 PGGSDRSCITRPQTTLPALEAALRLLRPGGVLTVVAYRGHPGGAEEAEAVRQWAEMLDPD 174
Query: 244 DWICCKFQMLNR 255
++ ++ NR
Sbjct: 175 RFVAARYAFCNR 186
>gi|159477717|ref|XP_001696955.1| rRNA methylase [Chlamydomonas reinhardtii]
gi|158274867|gb|EDP00647.1| rRNA methylase [Chlamydomonas reinhardtii]
Length = 293
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 124/225 (55%), Gaps = 13/225 (5%)
Query: 45 SSCCSAASFQQKQSCSTNNCTPLPLCKDSPL-------SGTLITIAANGVWKHVVRKGDT 97
+ C+A++ Q Q+ + DSPL +G+ + AA W +R GDT
Sbjct: 56 TRVCAASATAQVQAVALAPGEAPATSPDSPLGLVDVLSTGSRLITAAQAAWAQALRPGDT 115
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157
VDAT GNG+DTL + + V G V G DIQ A ST L+ S + + L
Sbjct: 116 AVDATMGNGHDTLFLAQAVG---PTGHVIGFDIQEAATASTRERLESHLSAEVRPRLSLH 172
Query: 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGG-DKSVITTSETTKM-ALEAAERILIPGGLI 215
CHSR++E+ S R+VAFNLGYLPG DK V TTS T + A+EAA +++PGGLI
Sbjct: 173 TACHSRLQELA-GSGRARVVAFNLGYLPGAPDKLVTTTSTNTTVEAVEAALEVVMPGGLI 231
Query: 216 SMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
+++ Y H GG EE EAV+A LS W + ++LNRP AP+
Sbjct: 232 TILSYTRHSGGLEEYEAVKALTSELSPSYWTASETRLLNRPTAPI 276
>gi|268316762|ref|YP_003290481.1| rRNA methylase [Rhodothermus marinus DSM 4252]
gi|262334296|gb|ACY48093.1| putative rRNA methylase [Rhodothermus marinus DSM 4252]
Length = 187
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 103/171 (60%), Gaps = 15/171 (8%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V++ G+ VDAT GNG+DTL + + V + G VYG D+Q EAL T L+ E
Sbjct: 10 VLQPGEMAVDATVGNGHDTLFLARQVGPQ---GHVYGFDVQEEALARTRRRLE------E 60
Query: 151 KGL---VKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGG-DKSVITTSETTKMALEA 204
GL V L M H M + VP + R+ V FNLGYLPGG D+S IT +TT ALEA
Sbjct: 61 AGLHERVTLLRMGHEHMAKAVPVAWHGRIGAVMFNLGYLPGGSDRSCITRPQTTVPALEA 120
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR 255
A R+L PGG++++V Y GHPGG EE EAV +A +L D ++ ++ NR
Sbjct: 121 ALRLLRPGGVLTVVAYRGHPGGAEEAEAVRRWAETLDPDRFVAARYAFCNR 171
>gi|406027183|ref|YP_006726015.1| rRNA methylase [Lactobacillus buchneri CD034]
gi|405125672|gb|AFS00433.1| putative rRNA methylase [Lactobacillus buchneri CD034]
Length = 190
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 102/176 (57%), Gaps = 5/176 (2%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V GDTVVD T GNG+DTL + +V + G VYG DIQ++A+++T +LL + +
Sbjct: 18 VDSGDTVVDCTMGNGHDTLFLANLVGKQ---GTVYGFDIQAQAVENTKALLKTNHVRTKN 74
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V L+N+ H++++EI+P T + FNLGYLPGGDK+++T ETT A++ L
Sbjct: 75 --VYLYNISHAKVDEILPYETMISGAIFNLGYLPGGDKTIVTYPETTIAAIKGCLNHLCH 132
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
G+I +V Y GHPGG E V F L + K+ LN+ P ++ +R
Sbjct: 133 NGVIVVVAYYGHPGGEREKNTVLEFGSQLDQKRYSVLKYSFLNQQHFPPILMAIQR 188
>gi|227524748|ref|ZP_03954797.1| rRNA methylase [Lactobacillus hilgardii ATCC 8290]
gi|227088102|gb|EEI23414.1| rRNA methylase [Lactobacillus hilgardii ATCC 8290]
Length = 191
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 5/181 (2%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K V GD V+D T GNG DTL++ K+V + G VYG DIQ +AL+ T SLL+K
Sbjct: 14 LLKEAVSTGDQVIDGTIGNGNDTLLLAKLVGEN---GTVYGFDIQQQALQHTISLLEKNL 70
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
S + V+L+ H+ ++ ++ + + FNLGYLPGGDKS+IT S +T AL
Sbjct: 71 SGLQN--VQLYKKSHAEIDNVLDNNVRISAAIFNLGYLPGGDKSIITKSTSTLTALTTCL 128
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
+ L GGL+ +VVY GHPGG++E E+V F ++L ++ + +N+ P V +
Sbjct: 129 KKLQVGGLVVIVVYYGHPGGKKEEESVVDFCQNLPQKNFAVLNYSFVNQAHEPPFVLAIQ 188
Query: 267 R 267
+
Sbjct: 189 K 189
>gi|386721185|ref|YP_006187510.1| hypothetical protein B2K_03215 [Paenibacillus mucilaginosus K02]
gi|384088309|gb|AFH59745.1| hypothetical protein B2K_03215 [Paenibacillus mucilaginosus K02]
Length = 193
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 108/176 (61%), Gaps = 7/176 (3%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
GDT VDAT GNG DTL + ++V G V+ D+Q AL+ T+ L + + ++ V
Sbjct: 21 GDTAVDATAGNGNDTLFLARLVG---GTGTVHAFDVQPRALEQTALRLGRELPEGQQ-RV 76
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212
L H ME+++P+ RL A FNLGYLPG D + +T E+T AL+A+ ++L G
Sbjct: 77 HLHLRSHGEMEQVLPEEARGRLAAVMFNLGYLPGDDHATVTLPESTLEALQASAKLLRRG 136
Query: 213 GLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA-PVLVFLFKR 267
G+I+ V+Y GHPGGREE +AVE +A LS ++ +++ +N+ + P L+ + KR
Sbjct: 137 GIITAVLYTGHPGGREEADAVEQWAAGLSQREFQVLQYRFVNQVHSPPYLIAVEKR 192
>gi|295398842|ref|ZP_06808836.1| rRNA methylase [Aerococcus viridans ATCC 11563]
gi|294972932|gb|EFG48765.1| rRNA methylase [Aerococcus viridans ATCC 11563]
Length = 188
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 105/188 (55%), Gaps = 6/188 (3%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
I + + K V KGD V+DAT G G DTL++ ++V E G VYGLDIQ++A+
Sbjct: 5 IVTVTHQIMKEKVHKGDHVLDATVGKGNDTLLLSQLVGQE---GIVYGLDIQAQAIAFAE 61
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTK 199
L + +A+ KLF HS +++++P ++ FNLGYLP GDK +IT S+TT
Sbjct: 62 KRL---SEEAKFKNTKLFVKNHSELDQVIPTDEKLQSAIFNLGYLPSGDKEIITQSDTTV 118
Query: 200 MALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
A++ L GL+ + YVGHPGG EE EAV+++ + F LN+ P
Sbjct: 119 KAIQTVLERLDKMGLLLIASYVGHPGGMEEFEAVQSYLEKCDQKSYNVAMFNFLNQKNLP 178
Query: 260 VLVFLFKR 267
+F+ +R
Sbjct: 179 PRLFIVER 186
>gi|338733290|ref|YP_004671763.1| putative rRNA methylase [Simkania negevensis Z]
gi|336482673|emb|CCB89272.1| hypothetical rRNA methylase [Simkania negevensis Z]
Length = 195
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 107/183 (58%), Gaps = 8/183 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ WK ++ GD V+DATCGNGYD+L + +MV+ G V +DIQ A+ +T L
Sbjct: 18 AHQYWKSFLKPGDFVIDATCGNGYDSLALAQMVS-----GHVLCIDIQERAINATREKLK 72
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K + + + K+ E P A L+ +NLGYLPG DK+V+T + T +L+
Sbjct: 73 KNLTPS---IFKVITYHLGSHEHFPPLKAAPSLIVYNLGYLPGSDKTVVTDAFETLKSLK 129
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
A +L PGG I + YVGHPGG EE + + +F++SL+ +D+ C Q +NR +P L+
Sbjct: 130 EALSLLKPGGAICLTCYVGHPGGEEEEKMLLSFSKSLNKNDFNVCYHQWINRLKSPSLLL 189
Query: 264 LFK 266
+ K
Sbjct: 190 IQK 192
>gi|255085586|ref|XP_002505224.1| predicted protein [Micromonas sp. RCC299]
gi|226520493|gb|ACO66482.1| predicted protein [Micromonas sp. RCC299]
Length = 226
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 118/207 (57%), Gaps = 11/207 (5%)
Query: 71 KDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVAD--------ESSA 122
+D ++ + T A+ +W+ V+R GDTVVDAT GNG+DT+ + +++AD S
Sbjct: 18 EDVIVTNSRTTDMAHTLWRAVMRPGDTVVDATMGNGWDTVALARILADLDASPAGDASKP 77
Query: 123 GCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLG 182
G V D+Q +AL ST + + + + + V L H RMEE V ++ AV +V FNLG
Sbjct: 78 GRVVAFDVQEDALTSTRARVREMLTPDQASRVDLVLKSHERMEEHV-RTDAVGVVCFNLG 136
Query: 183 YLPG--GDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSL 240
YLPG DK V T TT A+ + R+L PGG++++V Y GH GG EE+EAV SL
Sbjct: 137 YLPGPTADKEVRTRRTTTVSAVASGVRVLRPGGVLTVVGYTGHEGGWEEVEAVMELVSSL 196
Query: 241 SVDDWICCKFQMLNRPLAPVLVFLFKR 267
++ ++NR P L+ + ++
Sbjct: 197 DPREFTATNHSVVNRDNCPQLIAVHRK 223
>gi|78355142|ref|YP_386591.1| rRNA methylase [Desulfovibrio alaskensis G20]
gi|78217547|gb|ABB36896.1| rRNA methylase [Desulfovibrio alaskensis G20]
Length = 195
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 102/172 (59%), Gaps = 7/172 (4%)
Query: 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144
+G+ + VVR DTVVDAT GNG+DTL + +V + G VYG D+Q++AL++T+ L +
Sbjct: 17 HGLVRQVVRSADTVVDATAGNGHDTLFLAGLVGPQ---GRVYGFDVQAQALENTARRLQR 73
Query: 145 TTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA-FNLGYLPGGDKSVITTSETTKMALE 203
++ + V LF+ H ++P T A FNLGYLPG DK V+TT TT+ AL
Sbjct: 74 HGAERQ---VTLFHAGHEAAGRLLPAGTENLACAMFNLGYLPGSDKQVVTTWHTTEAALR 130
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR 255
A +L GGL+++ +Y GH GG E AV F +L D W ++ LN+
Sbjct: 131 AVMPLLRAGGLVTLHLYTGHAGGSAEAAAVHDFCAALPWDGWRVLRYDFLNK 182
>gi|315641876|ref|ZP_07896868.1| rRNA methylase [Enterococcus italicus DSM 15952]
gi|315482444|gb|EFU72984.1| rRNA methylase [Enterococcus italicus DSM 15952]
Length = 187
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 18/190 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST----- 138
++ + K ++ GD VVDAT GNG+DT + ++V G V+ D+Q AL +T
Sbjct: 9 SHQLAKEIILSGDCVVDATMGNGHDTAFLAQLVG---PTGHVFAFDVQKPALIATEQRLL 65
Query: 139 -SSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET 197
+ LLD+TT L + H + + PK TA++L FNLGYLP DK +IT SE
Sbjct: 66 AADLLDRTT---------LIHDGHEQFTQYFPKQTALKLAIFNLGYLPSSDKQIITHSEH 116
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
T A++ +L G I +V Y GHPGG+EEL+ V+AF ++L +++ +Q +N+
Sbjct: 117 TLAAIQQMLPVLAKRGRILLVAYYGHPGGQEELDHVQAFCQTLPQEEYQVMTYQFINQRN 176
Query: 258 APVLVFLFKR 267
AP ++F ++
Sbjct: 177 APPILFCIEK 186
>gi|15618895|ref|NP_225181.1| YtgB-like rRNA methylase [Chlamydophila pneumoniae CWL029]
gi|15836518|ref|NP_301042.1| rRNA methylase [Chlamydophila pneumoniae J138]
gi|16752040|ref|NP_445406.1| hypothetical protein CP0868 [Chlamydophila pneumoniae AR39]
gi|33242355|ref|NP_877296.1| rRNA methylase [Chlamydophila pneumoniae TW-183]
gi|384449828|ref|YP_005662430.1| putative methyltransferase [Chlamydophila pneumoniae LPCoLN]
gi|4377315|gb|AAD19124.1| YtgB-like predicted rRNA methylase [Chlamydophila pneumoniae
CWL029]
gi|7189780|gb|AAF38657.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
gi|8979360|dbj|BAA99194.1| rRNA methylase [Chlamydophila pneumoniae J138]
gi|33236866|gb|AAP98953.1| putative rRNA methylase [Chlamydophila pneumoniae TW-183]
gi|269302789|gb|ACZ32889.1| putative methyltransferase [Chlamydophila pneumoniae LPCoLN]
Length = 200
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 112/184 (60%), Gaps = 9/184 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ ++K V GDTV+DATCGNG D+L + +++ E G + DIQ EAL + L +
Sbjct: 16 SHEIFKTTVVPGDTVIDATCGNGNDSLFLARLLQGE---GRLVVYDIQKEALSNALLLFE 72
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
S+ E+ ++++ H E I+ K V+L+ +NLGYLP G+K + T + TT+++LE
Sbjct: 73 THLSEQERSVIEMKEQSH---EHILEKD--VKLIHYNLGYLPKGNKEITTLARTTEISLE 127
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
A I+ P GLI++V Y GHP G +E +VE+ A+ L +W F + NR AP L F
Sbjct: 128 YALNIVRPDGLITVVCYPGHPEGEKETHSVESLAQRLHPKEWCVSSFYVANRCRAPRL-F 186
Query: 264 LFKR 267
+F+R
Sbjct: 187 IFQR 190
>gi|39995796|ref|NP_951747.1| rRNA methyltransferase [Geobacter sulfurreducens PCA]
gi|409911238|ref|YP_006889703.1| rRNA methyltransferase [Geobacter sulfurreducens KN400]
gi|39982560|gb|AAR34020.1| rRNA methyltransferase, putative [Geobacter sulfurreducens PCA]
gi|298504804|gb|ADI83527.1| rRNA methyltransferase, putative [Geobacter sulfurreducens KN400]
Length = 189
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 103/175 (58%), Gaps = 9/175 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ GD VVDATCGNG+DTL + ++V E G V+ DIQ AL +T+ L+
Sbjct: 17 RERVKPGDRVVDATCGNGHDTLFLAELVGPE---GRVWAFDIQDAALAATAKRLEAAGCG 73
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
V+L N H R+ E+VP V V FNLG+LPG + ITT TT AL+ A +
Sbjct: 74 ER---VELVNGGHERLAELVPGP--VTAVVFNLGFLPGAENGTITTPATTGAALDQATEL 128
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLV 262
L+PGG++++ VY GHPGG EE AV+A+A SL + + + NR AP LV
Sbjct: 129 LLPGGIVTVAVYTGHPGGPEEEAAVDAWAASLPPARFNVWRCRQGNRSSAAPYLV 183
>gi|365851980|ref|ZP_09392392.1| putative rRNA methylase [Lactobacillus parafarraginis F0439]
gi|363715615|gb|EHL99044.1| putative rRNA methylase [Lactobacillus parafarraginis F0439]
Length = 191
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 95/176 (53%), Gaps = 5/176 (2%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V GDTV+D T GNG+DTL + ++V S G VYG DIQ A++ T L T +
Sbjct: 19 VNAGDTVIDGTVGNGHDTLFLAQLVG---SRGTVYGFDIQERAIQQTQERL--TAAPINH 73
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V LFN H + ++P V FNLGYLPGG+K +IT +ETT L L
Sbjct: 74 THVHLFNRGHQEIASVLPPMAQVSGAIFNLGYLPGGNKQLITHAETTIQGLRGCISHLTV 133
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG+I +VVY GHPGG+ E V+ F +L + K++ +N+ P V ++
Sbjct: 134 GGIIVIVVYYGHPGGQTEKNQVDNFCAALPQKQFAVLKYEFINQVHQPPFVLGIQK 189
>gi|226312973|ref|YP_002772867.1| hypothetical protein BBR47_33860 [Brevibacillus brevis NBRC 100599]
gi|226095921|dbj|BAH44363.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 186
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 109/185 (58%), Gaps = 10/185 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V+ G+TVVDAT GNG DTL + ++V +E G V DIQ +A++ T L+
Sbjct: 9 ARKLIRERVQVGETVVDATMGNGNDTLFLAQLVQEE---GKVIAFDIQPQAIEKTRERLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ +GL M + EEI + FNLGYLPGGDK + T + +T A++
Sbjct: 66 R------EGLANRVEMKLASHEEIDKLEILAAAIMFNLGYLPGGDKEITTQASSTIQAIQ 119
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLV 262
+ R+L PGG++++++Y GHP G E EAVEAF LS D++ K+Q +N+ AP L+
Sbjct: 120 SGLRVLRPGGIMTVMIYWGHPAGETEKEAVEAFCHELSQLDYLVLKYQYINQQNQAPFLL 179
Query: 263 FLFKR 267
+ +R
Sbjct: 180 AIERR 184
>gi|227513603|ref|ZP_03943652.1| rRNA methylase [Lactobacillus buchneri ATCC 11577]
gi|227083119|gb|EEI18431.1| rRNA methylase [Lactobacillus buchneri ATCC 11577]
Length = 191
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 107/181 (59%), Gaps = 5/181 (2%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K V GD V+D T GNG DTL++ K+V + G VYG DIQ +AL+ T SLL+K
Sbjct: 14 LLKEAVSTGDQVIDGTIGNGNDTLLLAKLVGEN---GTVYGFDIQQQALQHTISLLEKNL 70
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
S + V+L+ H+ ++ ++ + + FNLGYLPGGDKS+IT S +T AL
Sbjct: 71 SGLQN--VQLYKKSHAEIDNVLDNNVRISAAIFNLGYLPGGDKSIITKSTSTLTALTTCL 128
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
+ L GGL+ +VVY GHPGG++E ++V F ++L ++ + +N+ P V +
Sbjct: 129 KKLQVGGLVVIVVYYGHPGGKKEEKSVVDFCQNLPQKNFAVLNYSFVNQAHEPPFVLAIQ 188
Query: 267 R 267
+
Sbjct: 189 K 189
>gi|299469608|emb|CBN76462.1| methylase-related [Ectocarpus siliculosus]
Length = 451
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 109/184 (59%), Gaps = 3/184 (1%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ +W+ V GDTV+D T GNG+D+L + K+VA + G +Y +D+Q A+++T L
Sbjct: 269 AHLLWRQVAGPGDTVLDCTAGNGHDSLELAKIVALKDGVGSLYVMDVQERAIEATRERLR 328
Query: 144 KTTSKAEKGLVKLFNMCHSRM-EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL 202
+ L N M E+ P S V+LV +NLG+LPGGDKS+ T E T ++
Sbjct: 329 SELGELALKRSTLINGNFREMPAELEPLS--VQLVVYNLGWLPGGDKSITTKLEDTLESI 386
Query: 203 EAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
EAA+R++ GG+IS+++Y GH G+ E EAV +A L+ W + +NR +P L+
Sbjct: 387 EAAKRVVKHGGMISVMLYRGHAEGKRETEAVRDYAAGLAHSQWRVFMHERINRADSPELL 446
Query: 263 FLFK 266
+FK
Sbjct: 447 TIFK 450
>gi|380032199|ref|YP_004889190.1| methyltransferase, SAM-dependent [Lactobacillus plantarum WCFS1]
gi|342241442|emb|CCC78676.1| methyltransferase, SAM-dependent [Lactobacillus plantarum WCFS1]
Length = 197
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 112/196 (57%), Gaps = 12/196 (6%)
Query: 78 TLITIAANGVWKH-----VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQS 132
TLI +++ + H VV GD V+DAT GNG+DT+ + K+V + G V G DIQS
Sbjct: 8 TLIQLSSALAYSHALMNQVVNPGDHVIDATVGNGHDTVYLAKLVG---TTGHVDGFDIQS 64
Query: 133 EALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVI 192
A+++T++ LDK + V L+ H + + + ++ FNLGYLPGGDK +I
Sbjct: 65 AAIEATTTALDKAALTHQ---VTLWQTGHEHIADKIAADQPIKCAVFNLGYLPGGDKQII 121
Query: 193 TTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQM 252
T TT A++A + L+ GLI ++VY GHPGG E +AV + +L + ++Q
Sbjct: 122 TKPTTTLTAIKAIQERLVTNGLIILLVYAGHPGGATEAQAVLDYVTNLDQHQFQVLQYQF 181
Query: 253 LNR-PLAPVLVFLFKR 267
+N+ + P L+ + KR
Sbjct: 182 INQVHVPPYLLAIQKR 197
>gi|337745019|ref|YP_004639181.1| hypothetical protein KNP414_00721 [Paenibacillus mucilaginosus
KNP414]
gi|379718608|ref|YP_005310739.1| hypothetical protein PM3016_626 [Paenibacillus mucilaginosus 3016]
gi|336296208|gb|AEI39311.1| conserved protein YtqB [Paenibacillus mucilaginosus KNP414]
gi|378567280|gb|AFC27590.1| hypothetical protein PM3016_626 [Paenibacillus mucilaginosus 3016]
Length = 193
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 107/176 (60%), Gaps = 7/176 (3%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
GDT VDAT GNG DTL + ++V G V+ D+Q AL+ T+ L + + ++ V
Sbjct: 21 GDTAVDATAGNGNDTLFLARLVG---GTGTVHAFDVQPRALEQTALRLGRELPEGQQ-RV 76
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212
L H ME ++P+ R+ A FNLGYLPG D + +T E+T AL+A+ ++L G
Sbjct: 77 HLHLRSHGEMERVLPEEARGRVAAVMFNLGYLPGDDHATVTLPESTLEALQASAKLLRRG 136
Query: 213 GLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA-PVLVFLFKR 267
G+I+ V+Y GHPGGREE +AVE +A LS ++ +++ +N+ + P L+ + KR
Sbjct: 137 GIITAVLYTGHPGGREEADAVEKWAAGLSQREFQVLQYRFVNQVHSPPYLIAVEKR 192
>gi|322420924|ref|YP_004200147.1| rRNA methylase [Geobacter sp. M18]
gi|320127311|gb|ADW14871.1| rRNA methylase [Geobacter sp. M18]
Length = 195
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 102/177 (57%), Gaps = 9/177 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ VR GD VDATCGNG+DT ++ ++ + G V+ D+Q+ A+ +T LL++
Sbjct: 23 RERVRPGDLAVDATCGNGFDTALLAQLAGE---TGRVWAFDVQARAISATRELLEREGRL 79
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A V+L H R+ E VP+ VR V FNLGYLPGG+ ++IT T AL A +
Sbjct: 80 AN---VELLETGHERLAEFVPQG--VRAVVFNLGYLPGGETALITDPSNTVSALNQAAEL 134
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFL 264
L P G+I++ +Y GH GG EE AVE + +L + + + LNRP AP LV +
Sbjct: 135 LAPLGIITIALYTGHEGGPEEAAAVEKWGAALHPGRFNVWRHRQLNRPDTAPYLVLV 191
>gi|196250012|ref|ZP_03148707.1| putative rRNA methylase [Geobacillus sp. G11MC16]
gi|196210526|gb|EDY05290.1| putative rRNA methylase [Geobacillus sp. G11MC16]
Length = 190
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 108/189 (57%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V +GD +DAT GNG+DT+ + ++V D +G V+G DIQ EA+ +T++ L
Sbjct: 10 ARFLLERAVTEGDLAIDATVGNGHDTVYLAELVGD---SGHVFGFDIQPEAIAATTARL- 65
Query: 144 KTTSKAEKGL---VKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
+E+GL V LF HS + +P R+ FNLGYLPGGDK ++T E+T
Sbjct: 66 -----SEQGLHDRVTLFQQSHSELLTALPSDVYGRIAGAVFNLGYLPGGDKQIVTQPEST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E I+ PGG+I +VVY GHP G+ E +A+ + RSL K++ LNR
Sbjct: 121 IQAVEQLLSIMKPGGVIVLVVYHGHPEGKIERDALLDYVRSLDQQHTHVLKYEFLNRRND 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIIALEK 189
>gi|297583531|ref|YP_003699311.1| putative rRNA methylase [Bacillus selenitireducens MLS10]
gi|297141988|gb|ADH98745.1| putative rRNA methylase [Bacillus selenitireducens MLS10]
Length = 188
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 98/167 (58%), Gaps = 6/167 (3%)
Query: 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG 152
++GDTVVDAT GNG+DT+ + ++V ++G VYG DIQ AL +T L+K K +
Sbjct: 19 QEGDTVVDATVGNGHDTVYLAELVG---ASGSVYGFDIQKTALDAT---LNKLQQKGLEE 72
Query: 153 LVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212
V L + H ++ +P+ V FNLGYLPG DK +IT +TT A++ + L G
Sbjct: 73 RVALIHDGHEQLGAYIPQEKTVHAAVFNLGYLPGHDKEIITVPKTTITAVQELMQRLKKG 132
Query: 213 GLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
G+I +VVY GHPGG E + + F RSL ++W ++ N+ P
Sbjct: 133 GIIVLVVYHGHPGGDIERDQLREFTRSLPQEEWHVLEYGFTNQKNHP 179
>gi|254556277|ref|YP_003062694.1| methyltransferase () [Lactobacillus plantarum JDM1]
gi|418274864|ref|ZP_12890319.1| methyltransferase, SAM-dependent [Lactobacillus plantarum subsp.
plantarum NC8]
gi|448820854|ref|YP_007414016.1| Methyltransferase, SAM-dependent [Lactobacillus plantarum ZJ316]
gi|254045204|gb|ACT61997.1| methyltransferase (putative) [Lactobacillus plantarum JDM1]
gi|376009557|gb|EHS82884.1| methyltransferase, SAM-dependent [Lactobacillus plantarum subsp.
plantarum NC8]
gi|448274351|gb|AGE38870.1| Methyltransferase, SAM-dependent [Lactobacillus plantarum ZJ316]
Length = 175
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 104/178 (58%), Gaps = 7/178 (3%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
VV GD V+DAT GNG+DT+ + K+V + G V G DIQS A+++T++ LDK +
Sbjct: 4 VVNPGDHVIDATVGNGHDTVYLAKLVG---TTGHVDGFDIQSAAIEATTTALDKAALTHQ 60
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V L+ H + + + ++ FNLGYLPGGDK +IT TT A++A + L+
Sbjct: 61 ---VTLWQTGHEHIADKIAADQPIKCAVFNLGYLPGGDKQIITKPTTTLTAIKAIQERLV 117
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFKR 267
GLI ++VY GHPGG E +AV + +L + ++Q +N+ + P L+ + KR
Sbjct: 118 TNGLIILLVYAGHPGGATEAQAVLDYVTNLDQHQFQVLQYQFINQVHVPPYLLAIQKR 175
>gi|197119722|ref|YP_002140149.1| rRNA methyltransferase [Geobacter bemidjiensis Bem]
gi|197089082|gb|ACH40353.1| rRNA methyltransferase, putative [Geobacter bemidjiensis Bem]
Length = 192
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 103/179 (57%), Gaps = 9/179 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ VR GD +DATCGNG+DTL++ ++ + G V+ D+Q A+ +T +LL++
Sbjct: 19 RQRVRPGDRALDATCGNGFDTLLLAELAGE---GGEVWAFDVQPRAIAATRALLEREGRL 75
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A V L H R+ E VP A FNLGYLPGG+ S++T T AL A ++
Sbjct: 76 A---TVHLLEAGHERVSEFVPVGLAA--AVFNLGYLPGGETSLVTDPARTVTALTQAAKL 130
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDW-ICCKFQMLNRPLAPVLVFLFK 266
L PGG++++ +Y GH GG EE +AV + SL ++ + C Q+ P+AP LV + K
Sbjct: 131 LKPGGVVTIALYTGHEGGPEEAQAVHEWGASLPPREYNVWCSRQLNRSPVAPYLVLVEK 189
>gi|422419279|ref|ZP_16496234.1| methylase protein [Listeria seeligeri FSL N1-067]
gi|313632956|gb|EFR99886.1| methylase protein [Listeria seeligeri FSL N1-067]
Length = 191
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 112/185 (60%), Gaps = 9/185 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD VVDATCGNG+DTL++ ++V G V G DIQ A+ +T + L+
Sbjct: 10 AHDTLQKVVRPGDYVVDATCGNGHDTLLLAELVG---VNGHVLGFDIQQVAIATTKTRLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++ V+L H+ + E +T VR FNLGYLPGGDK + TT+++T ++++
Sbjct: 67 NAAVSSQ---VELICASHATIPEYA--TTPVRAAIFNLGYLPGGDKKITTTADSTLLSIQ 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLV 262
+L GG+I +V+Y GHP G++E +AV F ++S ++ +Q +N+ AP ++
Sbjct: 122 HLMELLEVGGVIILVIYHGHPEGKQEKQAVVRFCETISQQEFHVLSYQFINQQNDAPFVI 181
Query: 263 FLFKR 267
+ KR
Sbjct: 182 IIEKR 186
>gi|187735461|ref|YP_001877573.1| rRNA methylase [Akkermansia muciniphila ATCC BAA-835]
gi|187425513|gb|ACD04792.1| putative rRNA methylase [Akkermansia muciniphila ATCC BAA-835]
Length = 235
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 103/168 (61%), Gaps = 15/168 (8%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
VV GD VVDAT GNG+DT+ + ++V ++G V+ D+Q EA+++T L+K
Sbjct: 64 VVSPGDAVVDATAGNGHDTVFLARLVG---TSGQVHAFDVQEEAIRATRERLEK------ 114
Query: 151 KGL----VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
+GL V+L H R+ E+V V+ + FNLGYLPGGDK +T +E T ALE A
Sbjct: 115 EGLLTPSVQLHLASHDRLAELV--GGPVKAIVFNLGYLPGGDKKTVTRTECTLAALEQAA 172
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN 254
++ P GL+S++ Y GH GG+EE EAVEAF L W K+Q+LN
Sbjct: 173 ALIAPNGLLSVMCYPGHEGGKEEAEAVEAFLSRLPHHSWRAGKYQLLN 220
>gi|398814325|ref|ZP_10573006.1| putative methyltransferase [Brevibacillus sp. BC25]
gi|398036594|gb|EJL29803.1| putative methyltransferase [Brevibacillus sp. BC25]
Length = 186
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 108/185 (58%), Gaps = 10/185 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V+ G+TVVDAT GNG DTL + ++V +E G V DIQ +A++ T L+
Sbjct: 9 ARKLIRERVQVGETVVDATMGNGNDTLFLAQLVQEE---GKVIAFDIQPQAIEKTRERLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ +GL M + EEI + FNLGYLPGGDK + T + +T A++
Sbjct: 66 R------EGLANRVEMKLASHEEIDKLEINAAAIMFNLGYLPGGDKEITTQASSTIRAIQ 119
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLV 262
+ RIL PGG++++++Y GH G E EAVEAF LS D++ K+Q +N+ AP L+
Sbjct: 120 SGLRILRPGGIMTVMIYWGHSAGETEKEAVEAFCHELSQLDYLVLKYQYINQQNQAPFLL 179
Query: 263 FLFKR 267
+ +R
Sbjct: 180 AIERR 184
>gi|308180246|ref|YP_003924374.1| methyltransferase () [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308045737|gb|ADN98280.1| methyltransferase (putative) [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 175
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 104/178 (58%), Gaps = 7/178 (3%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
VV GD V+DAT GNG+DT+ + K+V + G V G DIQS A+++T++ LDK +
Sbjct: 4 VVNPGDHVIDATVGNGHDTVYLAKLVG---TTGRVDGFDIQSAAIEATTTALDKAALTHQ 60
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V L+ H + + + ++ FNLGYLPGGDK +IT TT A++A + L+
Sbjct: 61 ---VTLWQTGHEHIADKIAADQPIKCAVFNLGYLPGGDKQIITKPTTTLTAIKAIQERLV 117
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFKR 267
GLI ++VY GHPGG E +AV + +L + ++Q +N+ + P L+ + KR
Sbjct: 118 TNGLIILLVYAGHPGGATEAQAVLDYVTNLDQHQFQVLQYQFINQVHVPPYLLAIQKR 175
>gi|303282207|ref|XP_003060395.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457866|gb|EEH55164.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 249
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 118/217 (54%), Gaps = 5/217 (2%)
Query: 56 KQSCSTNNCTPL-PLCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLK 114
+++ + C P P +D S T A +W +R GD +DAT GNG+DT+ + +
Sbjct: 29 RRAAPRDACAPEEPHLEDVLSSSGRTTDMARSLWAAALRVGDVAIDATAGNGHDTVALAR 88
Query: 115 MVA--DESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172
+VA D +AG V D+Q+ A+ S + + + A V+L + H M VP
Sbjct: 89 LVARDDADAAGRVVAYDVQASAVASARARVTRELPPATAARVELRHASHDTMAADVPTPD 148
Query: 173 AVRLVAFNLGYLPGGD--KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREEL 230
+V +V FNLGYLPG D KSV TT++ T A+ A +L GG++++V YVGH GG EE
Sbjct: 149 SVGVVCFNLGYLPGADSDKSVTTTTDATVRAVTTATGLLREGGVVTVVAYVGHDGGAEET 208
Query: 231 EAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
AV AF +L ++ +LNR +P LV + +R
Sbjct: 209 AAVLAFCATLDPKRFVVSHHVVLNRKNSPQLVAVHRR 245
>gi|289434949|ref|YP_003464821.1| methylase [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171193|emb|CBH27735.1| methylase protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 191
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 111/185 (60%), Gaps = 9/185 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD VVDATCGNG+DTL++ ++V G V G DIQ A+ +T + L+
Sbjct: 10 AHDTLRKVVRPGDYVVDATCGNGHDTLLLAELVG---VNGHVLGFDIQQVAIAATKTRLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++ V+L H+ + E +T VR FNLGYLPGGDK + TT+++T ++++
Sbjct: 67 NAAVSSQ---VELICASHATIPEYA--TTPVRAAIFNLGYLPGGDKKITTTADSTLLSIQ 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLV 262
+L GG+I +V+Y GHP G++E +AV F ++S ++ +Q +N+ AP +
Sbjct: 122 HLMELLEVGGVIILVIYHGHPEGKQEKQAVVRFCETISQQEFHVLSYQFINQQNDAPFAI 181
Query: 263 FLFKR 267
+ KR
Sbjct: 182 IIEKR 186
>gi|392957030|ref|ZP_10322555.1| putative rRNA methylase [Bacillus macauensis ZFHKF-1]
gi|391876932|gb|EIT85527.1| putative rRNA methylase [Bacillus macauensis ZFHKF-1]
Length = 191
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 103/180 (57%), Gaps = 9/180 (5%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V +G+ VD TCGNG+DTL + +V + G VYG D+Q +A+ T+ L+ +
Sbjct: 17 VCHEGEIAVDGTCGNGHDTLFLANLVGE---TGHVYGFDVQEQAIAVTTERLEAASLLKR 73
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLV--AFNLGYLPGGDKSVITTSETTKMALEAAERI 208
V LF H ++E ++P R+ FNLGYLPG DK+++T ETT +A++
Sbjct: 74 ---VTLFQQGHHQLEHLLPADAKGRVACAVFNLGYLPGSDKAIVTKGETTILAVKQLLTY 130
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFLFKR 267
L GG+I +V+Y GH GGREE EAV FAR+L + ++ +N+ P +V + KR
Sbjct: 131 LKEGGIIVLVIYHGHEGGREEKEAVLQFARNLPQKEAHVLQYGFINQSNTPPFIVAIEKR 190
>gi|414154710|ref|ZP_11411027.1| putative rRNA methylase ytqB [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411453541|emb|CCO08931.1| putative rRNA methylase ytqB [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 190
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 106/181 (58%), Gaps = 16/181 (8%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
++++G T VD T GNG+DTLM+ ++V + G VY DIQS+AL +T L AE
Sbjct: 18 ILQEGHTAVDGTMGNGHDTLMLAELVG---ARGKVYAFDIQSQALNNTRRRL------AE 68
Query: 151 KGL----VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
GL V+L H +++ V ++ ++ FNLGYLPGGD SVIT +TT A+
Sbjct: 69 AGLLDGRVQLIQDGHQHIKQYVQQT--IQGAIFNLGYLPGGDHSVITRPDTTLTAIRHTL 126
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLF 265
+L P G + +VVY GHPGGR E EAVEA A L + + +LNR P AP ++ +
Sbjct: 127 ELLAPAGRLVVVVYPGHPGGRVEQEAVEALAARLDSLQFRVLRMTLLNRPPSAPGVIMIE 186
Query: 266 K 266
K
Sbjct: 187 K 187
>gi|300769233|ref|ZP_07079121.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|300493262|gb|EFK28442.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ATCC
14917]
Length = 175
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 103/178 (57%), Gaps = 7/178 (3%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
VV GD V+DAT GNG+DT+ + +V + G V G DIQS A+++T++ LDK +
Sbjct: 4 VVNPGDHVIDATVGNGHDTVYLANLVG---TTGHVDGFDIQSAAIEATTTALDKAALTHQ 60
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V L+ H + + + ++ FNLGYLPGGDK +IT TT A++A + L+
Sbjct: 61 ---VTLWQTGHEHIADKIAADQPIKCAVFNLGYLPGGDKQIITKPTTTLTAIKAIQERLV 117
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFKR 267
GLI ++VY GHPGG E +AV + +L + ++Q +N+ + P L+ + KR
Sbjct: 118 TNGLIILLVYAGHPGGATEAQAVLDYVTNLDQHQFQVLQYQFINQVHVPPYLLAIQKR 175
>gi|385799907|ref|YP_005836311.1| rRNA methylase [Halanaerobium praevalens DSM 2228]
gi|309389271|gb|ADO77151.1| rRNA methylase [Halanaerobium praevalens DSM 2228]
Length = 190
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 111/177 (62%), Gaps = 9/177 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ +GD V+DAT GNGYDT + ++V G VY D+Q++A+++T+ LL K + E+
Sbjct: 21 IDEGDLVIDATAGNGYDTKFLAELV---KKKGKVYAFDLQAKAIENTNKLL-KEHNLLER 76
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V+LF H +++ + K ++ V FNLGYLPGGDK++IT +E+T +ALE + ++L
Sbjct: 77 --VELFQTGHQNLDQYLNKK--IKAVIFNLGYLPGGDKALITKAESTILALEHSLKLLKK 132
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFLFKR 267
G+I +V+Y GH GG +E A+ F +L + ++ LN+P + P +V + KR
Sbjct: 133 MGIIILVIYSGHLGGEKEKRAIFDFVNNLDSKRYNVLNYRFLNQPGIPPEIVAIKKR 189
>gi|315303476|ref|ZP_07874063.1| methylase protein [Listeria ivanovii FSL F6-596]
gi|313628158|gb|EFR96704.1| methylase protein [Listeria ivanovii FSL F6-596]
Length = 191
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 111/185 (60%), Gaps = 9/185 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ ++VVR GD VVDATCGNG+DTL++ ++V G V G DIQ A+ +T + L+
Sbjct: 10 AHDTLRNVVRPGDYVVDATCGNGHDTLLLAELVG---VNGYVLGFDIQQVAIDATRTRLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++ V L H+ + E + VR FNLGYLPGGDK + TT+++T ++++
Sbjct: 67 NAAVSSQ---VNLICASHATIPEYA--TNPVRAAIFNLGYLPGGDKKITTTADSTLLSIQ 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLV 262
+L GG+I +V+Y GHP G++E +AV F ++S ++ +Q +N+ AP ++
Sbjct: 122 HLMELLEVGGVIILVIYHGHPEGKQEKQAVVRFCETISQQEFHVLSYQFINQQNDAPFVI 181
Query: 263 FLFKR 267
+ KR
Sbjct: 182 VIEKR 186
>gi|392988424|ref|YP_006487017.1| SAM-dependent methyltransferase, MraW methylase family protein
[Enterococcus hirae ATCC 9790]
gi|392335844|gb|AFM70126.1| SAM-dependent methyltransferase, MraW methylase family protein
[Enterococcus hirae ATCC 9790]
Length = 189
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
+++ GD +DAT GNGYDTL M ++V G VY DIQ AL+ST +K +A
Sbjct: 16 ILQPGDHAIDATMGNGYDTLFMAELVG---KTGHVYSFDIQPAALQSTK---EKLAEQAL 69
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V L+ H + +V ++ FNLGYLP DK++IT ETTK+A+E + L
Sbjct: 70 TDRVSLYLQGHETLGNVVAPEQPIKAGIFNLGYLPKSDKAIITLPETTKIAMEEILKRLA 129
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
P G + +VVY GH GG+ EL+ V+ F + L D + +Q +N+ P +++
Sbjct: 130 PRGRMIIVVYYGHEGGKSELDMVQQFCQRLPQDQYNVLNYQFINQKNNPPILY 182
>gi|303246235|ref|ZP_07332515.1| putative rRNA methylase [Desulfovibrio fructosovorans JJ]
gi|302492298|gb|EFL52170.1| putative rRNA methylase [Desulfovibrio fructosovorans JJ]
Length = 193
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 102/175 (58%), Gaps = 8/175 (4%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
G VDAT GNG D L + +VA + G V+ DIQ+EAL+ T L+ + L
Sbjct: 21 GRVAVDATAGNGNDALALAGLVAPD---GVVHCFDIQAEALEKTRKRLE---AAGLGHLA 74
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212
+ H M +P++ R+ A FNLG+LPGGD++VIT +TT AL+AA +L P
Sbjct: 75 RYHAAGHEAMLSRLPRAHHGRVAAAVFNLGFLPGGDEAVITRPKTTLAALDAASAVLAPD 134
Query: 213 GLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
G I++V Y GHPGG +E EAV A+ +L W +++++N+P P++ F +R
Sbjct: 135 GGIAVVCYTGHPGGADETEAVAAWCVNLPFHAWRAARYELVNKPGCPIIAFFVER 189
>gi|325568219|ref|ZP_08144627.1| rRNA methylase [Enterococcus casseliflavus ATCC 12755]
gi|325158252|gb|EGC70404.1| rRNA methylase [Enterococcus casseliflavus ATCC 12755]
Length = 192
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 105/184 (57%), Gaps = 8/184 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + K VV+ G T VDAT GNG+DT ++ +V G V+ DIQ +AL++T L
Sbjct: 9 SHTLLKEVVQPGHTAVDATMGNGFDTELLASLVG---PTGQVFAFDIQEQALQATKKRL- 64
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
T K V+L + H + ++V S V FNLGYLP GDK++IT +TTK ALE
Sbjct: 65 --TEKELLPQVQLIHQGHETLADVV--SGPVHAAIFNLGYLPKGDKAIITLPDTTKTALE 120
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
A L+P G I +V Y GH GG EL+ V +F + L +++ +Q +N+ P ++F
Sbjct: 121 ALLTRLVPKGRIILVCYYGHAGGEAELKEVHSFCQQLPQEEYNVLSYQFINQRNQPPILF 180
Query: 264 LFKR 267
+R
Sbjct: 181 CIER 184
>gi|134298946|ref|YP_001112442.1| putative rRNA methylase [Desulfotomaculum reducens MI-1]
gi|134051646|gb|ABO49617.1| putative rRNA methylase [Desulfotomaculum reducens MI-1]
Length = 185
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 101/177 (57%), Gaps = 8/177 (4%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
++R GD VD T GNG+DTL++ ++V S G VY DIQ +A+ +T L +
Sbjct: 13 ILRNGDLAVDGTMGNGHDTLLLAQLVG---SQGKVYAFDIQEQAIDNTRQRLVSQNLFDQ 69
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
+ VKL + H ++ + +R +NLGYLPGGD VIT +ETT +ALE +L
Sbjct: 70 R--VKLIHDGHQNIKHYI--EHPIRAAIYNLGYLPGGDHGVITKTETTLIALEHTLNLLS 125
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFK 266
GG + +VVY GHPGG++E EAVE L + K ++NR P AP +V + K
Sbjct: 126 SGGRMVIVVYPGHPGGQQEKEAVEQMVSQLDSLHYKVLKMTLVNRPPSAPGVVLIEK 182
>gi|381151271|ref|ZP_09863140.1| putative S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Methylomicrobium album BG8]
gi|380883243|gb|EIC29120.1| putative S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Methylomicrobium album BG8]
Length = 192
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 91/141 (64%), Gaps = 8/141 (5%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
G VDAT GNGYDTL +L+ VA AG VYG DIQ AL+S D+ + + +
Sbjct: 22 GAVAVDATVGNGYDTLFLLQKVA---PAGRVYGFDIQQLALESVQ---DRMANPDFRDCL 75
Query: 155 KLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212
LF+ H+ M+E++P++ V V FNLGYLPGGDKSVIT +E+T AL AA R+L P
Sbjct: 76 TLFHRSHAEMDEMLPQAQHGLVSAVMFNLGYLPGGDKSVITRAESTLAALSAASRLLSPE 135
Query: 213 GLISMVVYVGHPGGREELEAV 233
G+I++V Y GH GG +E E V
Sbjct: 136 GIITIVAYPGHVGGAQECEQV 156
>gi|357051448|ref|ZP_09112640.1| hypothetical protein HMPREF9478_02623 [Enterococcus saccharolyticus
30_1]
gi|355379784|gb|EHG26935.1| hypothetical protein HMPREF9478_02623 [Enterococcus saccharolyticus
30_1]
Length = 191
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 105/187 (56%), Gaps = 14/187 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + VV+ G TVVDAT GNG+DT ++ +V E G VY DIQ +A+ +T L
Sbjct: 9 SHTLLQEVVKPGQTVVDATMGNGHDTELLATLVGPE---GKVYAFDIQEQAVTTTKERL- 64
Query: 144 KTTSKAEKGL---VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
KGL V+L + H + + VP AV FNLGYLP DK +IT ETT+
Sbjct: 65 -----LAKGLLPQVELIHQGHETVADYVPD--AVHAAIFNLGYLPKSDKKIITLPETTEQ 117
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
AL+A + ++P G I +V Y GH GG EELEAV F R L + +Q +N+ P
Sbjct: 118 ALQALIQRIVPCGRIILVCYYGHEGGPEELEAVHRFCRQLPQAQFNVLSYQFINQRNQPP 177
Query: 261 LVFLFKR 267
++F +R
Sbjct: 178 VLFCIER 184
>gi|257870816|ref|ZP_05650469.1| SAM-dependent methyltransferase [Enterococcus gallinarum EG2]
gi|257804980|gb|EEV33802.1| SAM-dependent methyltransferase [Enterococcus gallinarum EG2]
Length = 186
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 105/187 (56%), Gaps = 14/187 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + VV+ G TVVDAT GNG+DT ++ +V E G VY DIQ +A+ +T L
Sbjct: 4 SHTLLQEVVKPGQTVVDATMGNGHDTELLATLVGPE---GKVYAFDIQEQAVTTTKERL- 59
Query: 144 KTTSKAEKGL---VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
KGL V+L + H + + VP AV FNLGYLP DK +IT ETT+
Sbjct: 60 -----LAKGLLPQVELIHQGHETVADYVPD--AVHAAIFNLGYLPKSDKKIITLPETTEQ 112
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
AL+A + ++P G I +V Y GH GG EELEAV F R L + +Q +N+ P
Sbjct: 113 ALQALIQRIVPCGRIILVCYYGHEGGPEELEAVHRFCRQLPQAQFNVLSYQFINQRNQPP 172
Query: 261 LVFLFKR 267
++F +R
Sbjct: 173 VLFCIER 179
>gi|404497668|ref|YP_006721774.1| efflux pump, RND superfamily, and rRNA methyltransferase [Geobacter
metallireducens GS-15]
gi|418067363|ref|ZP_12704708.1| hopanoid biosynthesis associated RND transporter like protein HpnN
[Geobacter metallireducens RCH3]
gi|78195270|gb|ABB33037.1| efflux pump, RND superfamily, and rRNA methyltransferase, putative
[Geobacter metallireducens GS-15]
gi|373558968|gb|EHP85285.1| hopanoid biosynthesis associated RND transporter like protein HpnN
[Geobacter metallireducens RCH3]
Length = 1128
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 20/216 (9%)
Query: 42 RFSSSCCSAASFQQKQSCSTNNC-------TPLPLCKDSPLSGTLITIAANGVWKHVVRK 94
RF S + A+ S +P+P + LSG + A+ + +R
Sbjct: 903 RFRSQPIAEATMNGNNSGRDEGFRVDAFARSPVPGPRSRGLSGAVQL--AHFFLQERLRP 960
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
GD VDATCGNG+DTL + ++V + G V+ D+Q++AL +T L + + V
Sbjct: 961 GDRAVDATCGNGHDTLFLAQLVGPQ---GRVWAFDVQAKALAATEERLAEAGCRDR---V 1014
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGL 214
L + H R+ E+V + VR V FNLG+LPG + +TT ETT LE A +L+PGGL
Sbjct: 1015 ALVHGGHERLAEVV--TGPVRAVVFNLGFLPGAPRETVTTPETTIAGLEQAAALLLPGGL 1072
Query: 215 ISMVVYVGHPGGREELEAVEAFARSL---SVDDWIC 247
+++ VY GHPGG +E AVE +A +L + W C
Sbjct: 1073 VTVAVYTGHPGGADEGAAVEDWAAALPPGRFNVWHC 1108
>gi|294501591|ref|YP_003565291.1| putative rRNA methylase [Bacillus megaterium QM B1551]
gi|295706939|ref|YP_003600014.1| rRNA methylase [Bacillus megaterium DSM 319]
gi|294351528|gb|ADE71857.1| putative rRNA methylase [Bacillus megaterium QM B1551]
gi|294804598|gb|ADF41664.1| putative rRNA methylase [Bacillus megaterium DSM 319]
Length = 189
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 109/196 (55%), Gaps = 17/196 (8%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+T A V +GD +DAT GNG+DTL + +V D G VYG DIQ +
Sbjct: 8 PFARTLLTNA--------VAQGDVAIDATAGNGHDTLFLANLVGD---TGHVYGFDIQPQ 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
A+++T L T + V L HS + ++P+S R+ FNLGYLPGGDK +
Sbjct: 57 AIQATQQRL---TEHHVENRVTLIQESHSNIN-MLPRSIKGRVTGAVFNLGYLPGGDKDI 112
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+TTSETT A+E +L P G+I +V+Y GH G++E + + + ++L D +++
Sbjct: 113 VTTSETTISAIEQLLDLLAPEGVIVLVIYHGHEQGKQERDDLLTYVQNLDQKDVHVLQYR 172
Query: 252 MLNRPLAPVLVFLFKR 267
+N+ P + ++
Sbjct: 173 FMNQQNNPPFIIAIEK 188
>gi|435853023|ref|YP_007314342.1| putative S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Halobacteroides halobius
DSM 5150]
gi|433669434|gb|AGB40249.1| putative S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Halobacteroides halobius
DSM 5150]
Length = 190
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ KG ++DAT GNGYDT M ++V +G ++G D+Q EA+K L+K + K +
Sbjct: 20 IAKGAKLIDATVGNGYDTKFMAELVG---RSGTIWGFDVQEEAIKRAKERLEKASLKEQ- 75
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
VKL N H M + +S V + FNLGYLPGG+K VIT +ETT A++ +L
Sbjct: 76 --VKLINDGHQNMSNYINQS--VDGILFNLGYLPGGNKKVITQAETTLQAVKEGLDLLKA 131
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG++ +V+Y+GH GGREE + + +A L + ++ +N+ P V K+
Sbjct: 132 GGVLVLVIYLGHEGGREERQVLFDYAIELDEKAYNVLHYKFINQKKEPPQVLAIKK 187
>gi|296133196|ref|YP_003640443.1| putative rRNA methylase [Thermincola potens JR]
gi|296031774|gb|ADG82542.1| putative rRNA methylase [Thermincola potens JR]
Length = 189
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 97/162 (59%), Gaps = 10/162 (6%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
G TV+DAT GNGYDTL + + V G VYG DIQ+EA+++T L K +GL+
Sbjct: 23 GATVIDATVGNGYDTLFLAEAVG---VVGRVYGFDIQAEAIENTKLRLLK------EGLL 73
Query: 155 KLFNMCHSRMEEIVPKSTA-VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
+ + H E + + T + + FNLGYLPGGD VIT TT MALE A ++L PGG
Sbjct: 74 ERVLLFHEGHENLAHRVTENIDGIMFNLGYLPGGDHRVITKPSTTIMALEGALKLLKPGG 133
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR 255
L ++VVY GH GG +E +A++ + L + + C K +NR
Sbjct: 134 LATVVVYPGHEGGADEAQALDEYVAHLPKNAYSCVKITFVNR 175
>gi|16803702|ref|NP_465187.1| hypothetical protein lmo1662 [Listeria monocytogenes EGD-e]
gi|386050638|ref|YP_005968629.1| hypothetical protein [Listeria monocytogenes FSL R2-561]
gi|404284157|ref|YP_006685054.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes SLCC2372]
gi|405758712|ref|YP_006687988.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes SLCC2479]
gi|16411098|emb|CAC99740.1| lmo1662 [Listeria monocytogenes EGD-e]
gi|346424484|gb|AEO26009.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-561]
gi|404233659|emb|CBY55062.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes SLCC2372]
gi|404236594|emb|CBY57996.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes SLCC2479]
Length = 191
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 109/185 (58%), Gaps = 9/185 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD VVDATCGNG+DTL++ ++V G V G DIQ A+ +T++ L+
Sbjct: 10 AHDTLRKVVRSGDYVVDATCGNGHDTLLLAELVG---INGHVLGFDIQQLAIDATNTRLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++ V+L H+R+ E K VR FNLGYLPGGDK + TT+++T ++
Sbjct: 67 NAGVSSQ---VELVCASHARIPEYTSKP--VRAAIFNLGYLPGGDKEITTTADSTLESIG 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLV 262
+L GG+I +V+Y GHP G++E +AV F ++ D+ + +N + AP ++
Sbjct: 122 HLMELLEVGGVIILVIYHGHPAGKQEKDAVMTFCEAIPQQDFHVLSYNFINQKNDAPFVI 181
Query: 263 FLFKR 267
+ KR
Sbjct: 182 IIEKR 186
>gi|315282619|ref|ZP_07870989.1| methylase protein [Listeria marthii FSL S4-120]
gi|313613730|gb|EFR87504.1| methylase protein [Listeria marthii FSL S4-120]
Length = 192
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 111/185 (60%), Gaps = 9/185 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD VVDATCGNG+DTL++ ++V G V G DIQ A+ +T++ L+
Sbjct: 10 AHDTLRKVVRSGDYVVDATCGNGHDTLLLAELVG---VNGHVLGFDIQQLAIDATNTRLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ ++ V+L H+R+ E K VR FNLGYLPGGDK + TT+++T ++
Sbjct: 67 NAGASSQ---VELVCASHARIPEYTSKP--VRAAIFNLGYLPGGDKEITTTADSTLESIG 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLV 262
+L GG+I +V+Y GHP G++E +AV F ++ ++ ++ +N + AP ++
Sbjct: 122 HLMELLEVGGVIILVIYHGHPAGKQEKDAVVTFCEAIPQQNFHVLSYKFINQKNDAPFVI 181
Query: 263 FLFKR 267
+ KR
Sbjct: 182 IIEKR 186
>gi|78043668|ref|YP_360801.1| hypothetical protein CHY_1982 [Carboxydothermus hydrogenoformans
Z-2901]
gi|77995783|gb|ABB14682.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 200
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 100/180 (55%), Gaps = 9/180 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ VV+ GD VDAT GNG DTL + V + G VY DIQ +ALK T L K
Sbjct: 16 QEVVQAGDVAVDATAGNGNDTLFLAHRVGEN---GKVYAFDIQEQALKITEQKL-KEAGV 71
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
AE+ + L H ++ + V ++ FNLGYLPGGDKS++T TT L ++
Sbjct: 72 AERAVFIL--DSHEKVLKYV--RVPIKAAVFNLGYLPGGDKSIVTKPSTTITGLAECYKL 127
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA-PVLVFLFKR 267
L+PGG+I++ VYVGH GG EE +E F++ + + K + LNRP P L + KR
Sbjct: 128 LLPGGIITVTVYVGHAGGEEERMVIEEFSQKIPDREGYVIKHEFLNRPQTYPKLYIIGKR 187
>gi|374623289|ref|ZP_09695802.1| putative rRNA methylase [Ectothiorhodospira sp. PHS-1]
gi|373942403|gb|EHQ52948.1| putative rRNA methylase [Ectothiorhodospira sp. PHS-1]
Length = 195
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 100/176 (56%), Gaps = 10/176 (5%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
+++ GD VDAT GNG+DTL + + V D AG V+ DIQ+ AL +T L+ AE
Sbjct: 19 ILKPGDLAVDATAGNGHDTLFLARTVGD---AGHVWAFDIQTAALDATRKRLE-AAGVAE 74
Query: 151 KGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
+ V L H +E +P +R V FNLGYLPGGD +IT ET+ ALEAA +
Sbjct: 75 R--VTLIRDGHQHLERHLPDQARGRIRAVTFNLGYLPGGDHGIITRPETSLAALEAARAV 132
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
L P G+IS+++Y GH GG EE EA+ A+ + + + + C PVLV L
Sbjct: 133 LGPDGIISLMIYRGHSGGLEEFEAIRAWLQQVHPE--LHCFPHQPAGDDGPVLVLL 186
>gi|148263095|ref|YP_001229801.1| putative rRNA methylase [Geobacter uraniireducens Rf4]
gi|146396595|gb|ABQ25228.1| putative rRNA methylase [Geobacter uraniireducens Rf4]
Length = 200
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 92/162 (56%), Gaps = 8/162 (4%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
GD VVDATCGNG DTL + ++V G V+ D+Q EAL + L + + V
Sbjct: 24 GDRVVDATCGNGQDTLFLARLVG---PLGMVWAFDVQEEALAKARTHLSEAGCLSR---V 77
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGL 214
KL H ++ V V+ V FNLGYLPG DK+ IT ETT AL+ +E +L PGG+
Sbjct: 78 KLLQAGHEQLAAHV--EGPVQAVVFNLGYLPGSDKACITLPETTLAALKQSETVLFPGGI 135
Query: 215 ISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP 256
I + VY GHPGGREE AVE + SL + + +NRP
Sbjct: 136 IVIAVYTGHPGGREEGAAVEQWVASLPYQSYSVWCSRQINRP 177
>gi|422422367|ref|ZP_16499320.1| methylase protein [Listeria seeligeri FSL S4-171]
gi|313637570|gb|EFS02980.1| methylase protein [Listeria seeligeri FSL S4-171]
Length = 191
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 111/185 (60%), Gaps = 9/185 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD VVDATCGNG+DTL++ ++V G V G DIQ A+ +T + L+
Sbjct: 10 AHDTLQKVVRPGDYVVDATCGNGHDTLLLAELVG---VNGHVLGFDIQQVAIAATKTRLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++ V+L H+ + E +T VR FNLGYLPGGDK + TT+++T ++++
Sbjct: 67 NAAVSSQ---VELICASHATIPEYA--TTPVRAAIFNLGYLPGGDKKITTTADSTLISIQ 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLV 262
+L GG+I +V+Y GH G++E +AV F ++S ++ +Q +N+ AP ++
Sbjct: 122 HLMELLEVGGVIILVIYHGHQEGKQEKQAVVRFCETISQQEFHVLSYQFINQQNDAPFVI 181
Query: 263 FLFKR 267
+ KR
Sbjct: 182 VIEKR 186
>gi|386053914|ref|YP_005971472.1| hypothetical protein [Listeria monocytogenes Finland 1998]
gi|346646565|gb|AEO39190.1| conserved hypothetical protein [Listeria monocytogenes Finland
1998]
gi|441471393|emb|CCQ21148.1| Putative rRNA methylase ytqB [Listeria monocytogenes]
gi|441474525|emb|CCQ24279.1| Putative rRNA methylase ytqB [Listeria monocytogenes N53-1]
Length = 191
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 108/185 (58%), Gaps = 9/185 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD VVDATCGNG+DTL++ ++V G V G DIQ A+ +T++ L
Sbjct: 10 AHDTLRKVVRSGDYVVDATCGNGHDTLLLAELVG---VNGHVLGFDIQQLAIDATNTRLK 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++ V+L H+R+ E K VR FNLGYLPGGDK + TT+++T ++
Sbjct: 67 NAGVSSQ---VELVCASHARIPEYTSKP--VRAAIFNLGYLPGGDKEITTTADSTLESIG 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLV 262
+L GG+I +V+Y GHP G++E +AV F ++ D+ + +N + AP ++
Sbjct: 122 HLMELLEVGGVIILVIYHGHPAGKQEKDAVMTFCEAIPQQDFHVLSYNFINQKNDAPFVI 181
Query: 263 FLFKR 267
+ KR
Sbjct: 182 IIEKR 186
>gi|334341581|ref|YP_004546561.1| rRNA methylase [Desulfotomaculum ruminis DSM 2154]
gi|334092935|gb|AEG61275.1| rRNA methylase [Desulfotomaculum ruminis DSM 2154]
Length = 200
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 106/179 (59%), Gaps = 8/179 (4%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+R GD +D T GNG+DTL + ++V G V DIQS+AL++T + L+
Sbjct: 18 EEVLRPGDAALDGTMGNGHDTLALARLV---GPGGKVTAFDIQSQALENTQTRLNAAGVW 74
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
++ ++L H +++ V ++ +R FNLGYLPGGD +IT +ETT ALE A +
Sbjct: 75 DDR--IRLVLDGHQHIKKYV--TSPIRAAIFNLGYLPGGDHGMITRTETTLQALEQALDL 130
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFLFK 266
L+PGG + +VVY GH GG +E EAVE L+ + K +LNRP AP ++ + K
Sbjct: 131 LVPGGRLVVVVYPGHCGGDQEKEAVEQKMSGLAAQQFRVIKVNLLNRPATAPGVIMIEK 189
>gi|284802054|ref|YP_003413919.1| hypothetical protein LM5578_1809 [Listeria monocytogenes 08-5578]
gi|284995196|ref|YP_003416964.1| hypothetical protein LM5923_1761 [Listeria monocytogenes 08-5923]
gi|284057616|gb|ADB68557.1| hypothetical protein LM5578_1809 [Listeria monocytogenes 08-5578]
gi|284060663|gb|ADB71602.1| hypothetical protein LM5923_1761 [Listeria monocytogenes 08-5923]
Length = 191
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 108/185 (58%), Gaps = 9/185 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD VVDATCGNG+DTL++ ++V G V G DIQ A+ +T++ L
Sbjct: 10 AHDTLRKVVRSGDYVVDATCGNGHDTLLLAELVG---VNGHVLGFDIQQLAIDATNTRLK 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++ V+L H+R+ E K VR FNLGYLPGGDK + TT+++T ++
Sbjct: 67 NAGVSSQ---VELVCASHARIPEYTSKP--VRAAIFNLGYLPGGDKEITTTADSTLESIG 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLV 262
+L GG+I +V+Y GHP G+ E +AV F ++ D+ +Q +N + AP ++
Sbjct: 122 HLMELLEVGGVIILVIYHGHPAGKLEKDAVVTFCEAIPQQDFHVLSYQFINQKNDAPFVI 181
Query: 263 FLFKR 267
+ KR
Sbjct: 182 VIEKR 186
>gi|347549060|ref|YP_004855388.1| hypothetical protein LIV_1638 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982131|emb|CBW86125.1| Conserved hypothetical protein [Listeria ivanovii subsp. ivanovii
PAM 55]
Length = 191
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 111/187 (59%), Gaps = 13/187 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD VVDATCGNG+DTL++ ++V G V G DIQ A+ +T + L+
Sbjct: 10 AHDTLRKVVRPGDYVVDATCGNGHDTLLLAELVG---VNGHVLGFDIQQVAIDTTRTRLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPK--STAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
++ V+L H+ +PK + VR FNLGYLPGGDK + TT+++T ++
Sbjct: 67 NAVVSSQ---VELICASHA----TIPKYATNPVRAAIFNLGYLPGGDKKITTTADSTLIS 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APV 260
++ +L GG+I +V+Y GHP G++E +AV F ++ ++ +Q +N+ AP
Sbjct: 120 IQHLMELLEVGGVIILVIYHGHPEGKQEKQAVVRFCENICQQEFHVLSYQFINQQNDAPF 179
Query: 261 LVFLFKR 267
L+ + KR
Sbjct: 180 LIVIEKR 186
>gi|329943117|ref|ZP_08291891.1| rRNA methylase family protein [Chlamydophila psittaci Cal10]
gi|332287699|ref|YP_004422600.1| SAM-dependent methyltransferase [Chlamydophila psittaci 6BC]
gi|384450858|ref|YP_005663458.1| rRNA methylase [Chlamydophila psittaci 6BC]
gi|384451852|ref|YP_005664450.1| SAM-dependent methyltransferase [Chlamydophila psittaci 01DC11]
gi|384452826|ref|YP_005665423.1| SAM-dependent methyltransferase [Chlamydophila psittaci 08DC60]
gi|384453805|ref|YP_005666401.1| SAM-dependent methyltransferase [Chlamydophila psittaci C19/98]
gi|384454784|ref|YP_005667379.1| SAM-dependent methyltransferase [Chlamydophila psittaci 02DC15]
gi|407454332|ref|YP_006733440.1| rRNA methylase family protein [Chlamydia psittaci 84/55]
gi|407457021|ref|YP_006735594.1| rRNA methylase family protein [Chlamydia psittaci VS225]
gi|407458342|ref|YP_006736647.1| rRNA methylase family protein [Chlamydia psittaci WS/RT/E30]
gi|407460961|ref|YP_006738736.1| rRNA methylase family protein [Chlamydia psittaci WC]
gi|449071418|ref|YP_007438498.1| hypothetical protein AO9_03980 [Chlamydophila psittaci Mat116]
gi|325506523|gb|ADZ18161.1| SAM-dependent methyltransferase [Chlamydophila psittaci 6BC]
gi|328814664|gb|EGF84654.1| rRNA methylase family protein [Chlamydophila psittaci Cal10]
gi|328914952|gb|AEB55785.1| rRNA methylase [Chlamydophila psittaci 6BC]
gi|334692586|gb|AEG85805.1| SAM-dependent methyltransferase [Chlamydophila psittaci C19/98]
gi|334693562|gb|AEG86780.1| SAM-dependent methyltransferase [Chlamydophila psittaci 01DC11]
gi|334694541|gb|AEG87758.1| SAM-dependent methyltransferase [Chlamydophila psittaci 02DC15]
gi|334695515|gb|AEG88731.1| SAM-dependent methyltransferase [Chlamydophila psittaci 08DC60]
gi|405781091|gb|AFS19841.1| rRNA methylase family protein [Chlamydia psittaci 84/55]
gi|405784282|gb|AFS23029.1| rRNA methylase family protein [Chlamydia psittaci VS225]
gi|405784928|gb|AFS23674.1| rRNA methylase family protein [Chlamydia psittaci WS/RT/E30]
gi|405787077|gb|AFS25821.1| rRNA methylase family protein [Chlamydia psittaci WC]
gi|449039926|gb|AGE75350.1| hypothetical protein AO9_03980 [Chlamydophila psittaci Mat116]
Length = 197
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 110/192 (57%), Gaps = 10/192 (5%)
Query: 75 LSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA 134
L G ++ ++ +++HV+ GDT VDATCGNG D L++ +++ G + D+Q EA
Sbjct: 8 LQGNVVRLSHE-IFQHVLTPGDTAVDATCGNGKDCLILARIL---QGKGKLVAYDVQREA 63
Query: 135 LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITT 194
L S L K+ S EK +++ M H + E + +L +NLGYLP GDKS+ T
Sbjct: 64 LTKASLLCSKSLSNEEKSIIEFKEMSHEHINE-----SGAKLFHYNLGYLPNGDKSITTL 118
Query: 195 SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN 254
+TT M+++ A ++ P G++++V Y GH G E+ +VE A +L W F ++N
Sbjct: 119 EKTTIMSIQKALTLVAPQGVVTVVCYPGHAEGANEMCSVEGLACTLDPKLWEVGSFYIMN 178
Query: 255 RPLAPVLVFLFK 266
R AP L F+F+
Sbjct: 179 RYKAPRL-FVFR 189
>gi|392376930|ref|YP_004064708.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
gi|313848273|emb|CBY17274.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
Length = 198
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 110/192 (57%), Gaps = 10/192 (5%)
Query: 75 LSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA 134
L G ++ ++ +++HV+ GDT VDATCGNG D L++ +++ G + D+Q EA
Sbjct: 9 LQGNVVRLSHE-IFQHVLTPGDTAVDATCGNGKDCLILARIL---QGKGKLVAYDVQREA 64
Query: 135 LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITT 194
L S L K+ S EK +++ M H + E + +L +NLGYLP GDKS+ T
Sbjct: 65 LTKASLLCSKSLSNEEKSIIEFKEMSHEHINE-----SGAKLFHYNLGYLPNGDKSITTL 119
Query: 195 SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN 254
+TT M+++ A ++ P G++++V Y GH G E+ +VE A +L W F ++N
Sbjct: 120 EKTTIMSIQKALTLVAPQGVVTVVCYPGHAEGANEMCSVEGLACTLDPKLWEVGSFYIMN 179
Query: 255 RPLAPVLVFLFK 266
R AP L F+F+
Sbjct: 180 RYKAPRL-FVFR 190
>gi|433546731|ref|ZP_20503035.1| hypothetical protein D478_23653 [Brevibacillus agri BAB-2500]
gi|432181951|gb|ELK39548.1| hypothetical protein D478_23653 [Brevibacillus agri BAB-2500]
Length = 186
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 108/185 (58%), Gaps = 10/185 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++G+TV+DAT GNG DTL + ++V + G V DIQ +A+ T L+
Sbjct: 9 ARKLIRERVQQGETVIDATMGNGNDTLFLAQLVQE---TGKVIAFDIQPQAIAKTKDRLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ +GL + + EEI + + FNLGYLPGGDK + T + +T A+E
Sbjct: 66 R------EGLADRVELKLASHEEIESLNVQAAAIMFNLGYLPGGDKEITTQASSTIRAIE 119
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLV 262
+ R+L PGG++++++Y GH G E EAVEAF LS +++ K+Q +N+ AP L+
Sbjct: 120 SGLRVLRPGGIMTVMIYWGHAAGEVEKEAVEAFCHELSQLEFLVLKYQYINQQNQAPFLL 179
Query: 263 FLFKR 267
+ +R
Sbjct: 180 AIERR 184
>gi|257866928|ref|ZP_05646581.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC30]
gi|257873261|ref|ZP_05652914.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC10]
gi|257800984|gb|EEV29914.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC30]
gi|257807425|gb|EEV36247.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC10]
Length = 187
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 105/187 (56%), Gaps = 14/187 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + K V++ G T VDAT GNG+DT ++ +V G V+ DIQ +AL++T L
Sbjct: 4 SHTLLKEVLQPGQTAVDATMGNGFDTELLASLVG---PTGQVFAFDIQEQALQATKKRL- 59
Query: 144 KTTSKAEKGL---VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
AEK L V+L + H + E+V S V FNLGYLP GDK++IT +TTK
Sbjct: 60 -----AEKELLAQVQLIHQGHETLAEVV--SGPVHAAIFNLGYLPQGDKAIITLPDTTKT 112
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
ALEA L P G I +V Y GH GG EL+ V +F + L + + +Q +N+ P
Sbjct: 113 ALEALLTRLAPKGRIILVCYYGHAGGEAELKEVHSFCQQLPQEKFNVLSYQFINQRNQPP 172
Query: 261 LVFLFKR 267
++F +R
Sbjct: 173 ILFCIER 179
>gi|389871486|ref|YP_006378905.1| putative rRNA methylase [Advenella kashmirensis WT001]
gi|388536735|gb|AFK61923.1| putative rRNA methylase [Advenella kashmirensis WT001]
Length = 188
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 107/189 (56%), Gaps = 16/189 (8%)
Query: 67 LPLCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVY 126
+PL K TL+ HVV G V+DAT GNG+DTL + ++V + AG VY
Sbjct: 1 MPLLKTVAFVHTLLA-------GHVV-AGARVIDATMGNGHDTLQLARLVGE---AGHVY 49
Query: 127 GLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPG 186
DIQ +AL +T++ L +A L+ + H+ M + V S V + FNLGYLPG
Sbjct: 50 AFDIQRDALAATAARLGHENLQARATLI---HDSHAHMLDYV--SEPVSAIIFNLGYLPG 104
Query: 187 GDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246
DKS T + +T A+++A +L PGGL+ + +Y GHP G +E EA+E F LS + +
Sbjct: 105 ADKSCATQANSTLAAVKSALTLLAPGGLLLIAIYWGHPAGADEKEALEPFVAQLSPEQYR 164
Query: 247 CCKFQMLNR 255
K++ +NR
Sbjct: 165 VLKYEFINR 173
>gi|347534518|ref|YP_004841188.1| hypothetical protein LSA_08500 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504574|gb|AEN99256.1| hypothetical protein LSA_08500 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 204
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 110/187 (58%), Gaps = 13/187 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + K +V+ GD VVDAT G G DTL + ++V + G VY DIQ++A + T L++
Sbjct: 28 SHTLLKEIVKPGDVVVDATAGKGNDTLFLAQLVGER---GHVYSFDIQAQATQLTQRLVE 84
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ + + ++ N H + V P + A+ FNLGYLP GD ++T +TT +
Sbjct: 85 QHQVEQQTTVI---NDGHENLTNYVKSPITAAI----FNLGYLPEGDHKIVTKPQTTLKS 137
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPV 260
+++ ++L P G+I +V+Y GHPGG++E E V FA+S+ + ++Q +N+ P+
Sbjct: 138 VQSMMKLLKPNGIIILVIYYGHPGGKQEKEQVLQFAKSIDQHQFNVLQYQFINQIHEPPI 197
Query: 261 LVFLFKR 267
L+ L KR
Sbjct: 198 LLALQKR 204
>gi|257877004|ref|ZP_05656657.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC20]
gi|257811170|gb|EEV39990.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC20]
Length = 187
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 105/187 (56%), Gaps = 14/187 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + K V++ G T VDAT GNG+DT ++ +V G V+ DIQ +AL++T L
Sbjct: 4 SHTLLKEVLQPGQTAVDATMGNGFDTELLASLVG---PTGQVFAFDIQEQALQATKKRL- 59
Query: 144 KTTSKAEKGL---VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
AEK L V+L + H + E+V S V FNLGYLP GDK++IT +TTK
Sbjct: 60 -----AEKELLAQVQLIHQGHETLAEVV--SGPVHAAIFNLGYLPKGDKAIITLPDTTKT 112
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
ALEA L P G I +V Y GH GG EL+ V +F + L + + +Q +N+ P
Sbjct: 113 ALEALLTRLAPKGRIILVCYYGHAGGEAELKEVHSFCQQLPQEAFNVLSYQFINQRNQPP 172
Query: 261 LVFLFKR 267
++F +R
Sbjct: 173 ILFCIER 179
>gi|399055624|ref|ZP_10743319.1| Putative rRNA methylase [Brevibacillus sp. CF112]
gi|398046833|gb|EJL39417.1| Putative rRNA methylase [Brevibacillus sp. CF112]
Length = 186
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 108/185 (58%), Gaps = 10/185 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++G+TV+DAT GNG DTL + ++V + G V DIQ +A+ T L+
Sbjct: 9 ARKLIRERVQQGETVIDATMGNGNDTLFLAQLVQE---TGKVIAFDIQPQAIAKTKDRLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ +GL + + EEI + + FNLGYLPGGDK + T + +T A+E
Sbjct: 66 R------EGLADRVELKLASHEEIESLNVQAAAIMFNLGYLPGGDKEITTQAGSTIRAIE 119
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLV 262
+ R+L PGG++++++Y GH G E EAVEAF LS +++ K+Q +N+ AP L+
Sbjct: 120 SGLRVLRPGGIMTVMIYWGHAAGEVEKEAVEAFCHELSQLEFLVLKYQYINQQNQAPFLL 179
Query: 263 FLFKR 267
+ +R
Sbjct: 180 AIERR 184
>gi|418068846|ref|ZP_12706127.1| SAM-dependent methyltransferase [Pediococcus acidilactici MA18/5M]
gi|357538504|gb|EHJ22525.1| SAM-dependent methyltransferase [Pediococcus acidilactici MA18/5M]
Length = 187
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 102/179 (56%), Gaps = 11/179 (6%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
VV+ GD VVDAT GNG+DTL + +V S G V+ DIQ+ AL +T + ++K +
Sbjct: 16 VVQPGDHVVDATMGNGHDTLFLANLV---QSQGRVFSFDIQAAALSATEARIEKQLPDHQ 72
Query: 151 KGLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
V+L H ++ + V P S AV FNLGYLPGGDK +IT S +T A++ R+
Sbjct: 73 H--VQLIQDSHDQLAQYVDTPISGAV----FNLGYLPGGDKQIITHSASTIAAVQQCLRL 126
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG + +V Y GHPGG EL + F +L + C +++ +N+ P ++ +R
Sbjct: 127 LKVGGRVVLVCYYGHPGGAAELAKLLEFTANLDQHQFTCLRYEFINQVHQPPILLAIER 185
>gi|253699523|ref|YP_003020712.1| rRNA methylase [Geobacter sp. M21]
gi|251774373|gb|ACT16954.1| putative rRNA methylase [Geobacter sp. M21]
Length = 195
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 100/173 (57%), Gaps = 9/173 (5%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
GD V+DATCGNG+DTL++ ++ + G V+ D+Q A+ +T +LL++ A V
Sbjct: 25 GDLVLDATCGNGFDTLLLAELTGE---GGEVWAFDVQPRAIAATRALLEREGRLAA---V 78
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGL 214
L H R+ E VP A FNLGYLPGG+ +++T T AL +L PGG+
Sbjct: 79 HLLEAGHERVSEFVPAGLAA--AVFNLGYLPGGETNLVTDPVRTVSALGQTAMLLKPGGI 136
Query: 215 ISMVVYVGHPGGREELEAVEAFARSLSVDDW-ICCKFQMLNRPLAPVLVFLFK 266
I++ +Y GH GG EE +AV + SLS ++ + C Q+ P+AP LV + K
Sbjct: 137 ITIALYTGHEGGPEEAQAVHEWGASLSPREYNVWCSRQLNRPPVAPYLVLVEK 189
>gi|381211777|ref|ZP_09918848.1| hypothetical protein LGrbi_17758 [Lentibacillus sp. Grbi]
Length = 189
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 100/186 (53%), Gaps = 9/186 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + K V +GDTV+DATCGNG+DTL + ++V +E G V+G DIQ EA+ +T LD
Sbjct: 9 SHHLMKEAVSQGDTVIDATCGNGHDTLFLSRIVGEE---GHVFGFDIQEEAIANTKYRLD 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETTKMA 201
+ + + HS +P RL FNLGYLPG DKSVIT SETT +A
Sbjct: 66 QNNRRN----ATVIKDSHSNFVHHIPVDKLTRLGGAIFNLGYLPGSDKSVITRSETTILA 121
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
+E L G++ +VVY GH GG E E + + R L + + +N+ P
Sbjct: 122 IEGILSHLKQNGIVVLVVYHGHEGGDLEREQLMRYVRLLDQKLYHVLYYGFINQKNDPPF 181
Query: 262 VFLFKR 267
+ ++
Sbjct: 182 ILAIQK 187
>gi|420264575|ref|ZP_14767204.1| rRNA methylase [Enterococcus sp. C1]
gi|394767889|gb|EJF48119.1| rRNA methylase [Enterococcus sp. C1]
Length = 192
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 103/184 (55%), Gaps = 8/184 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + K V++ G T VDAT GNG+DT ++ +V G V+ DIQ +AL++T L
Sbjct: 9 SHTLLKEVLQPGQTAVDATMGNGFDTELLASLVG---PTGQVFAFDIQEQALQATKKRL- 64
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
T K V+L + H + ++V S V FNLGYLP GDK++IT +TTK ALE
Sbjct: 65 --TEKELLAQVQLIHQGHETLADVV--SGPVHAAIFNLGYLPKGDKAIITLPDTTKTALE 120
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
L P G I +V Y GH GG EL+ V +F + L +++ +Q +N+ P ++F
Sbjct: 121 VLLTRLAPKGRIILVCYYGHAGGEAELKEVHSFCQQLPQEEYNVLSYQFINQRNQPPILF 180
Query: 264 LFKR 267
+R
Sbjct: 181 CIER 184
>gi|304384539|ref|ZP_07366885.1| rRNA methylase [Pediococcus acidilactici DSM 20284]
gi|304328733|gb|EFL95953.1| rRNA methylase [Pediococcus acidilactici DSM 20284]
Length = 187
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 102/179 (56%), Gaps = 11/179 (6%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
VV+ GD VVDAT GNG+DTL + +V S G V+ DIQ+ AL +T + L+K +
Sbjct: 16 VVQPGDHVVDATMGNGHDTLFLANLV---QSQGQVFSFDIQAAALSATEARLEKQLPDHQ 72
Query: 151 KGLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
V+L H ++ + V P S AV FNLGYLPGGDK +IT S +T A++ ++
Sbjct: 73 H--VQLIQDSHDQLTQYVDTPISGAV----FNLGYLPGGDKQIITHSASTIAAVQQCLQL 126
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG + +V Y GHPGG EL + F +L + C +++ +N+ P ++ +R
Sbjct: 127 LKVGGRVVLVCYYGHPGGAAELAKLLEFTANLDQHQFTCLRYEFINQVHQPPILLAIER 185
>gi|56421381|ref|YP_148699.1| hypothetical protein GK2846 [Geobacillus kaustophilus HTA426]
gi|56381223|dbj|BAD77131.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 195
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 98/173 (56%), Gaps = 14/173 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V +GD VDAT GNG+DT+ + + V D G V+G DIQSEA+ + S+ L A+
Sbjct: 18 VNEGDIAVDATVGNGHDTVYLAQRVGD---FGHVFGFDIQSEAITAASARL------AKH 68
Query: 152 GL---VKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
GL LF HS + E +P R+ FNLGYLPGG+K ++T E+T A+
Sbjct: 69 GLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGYLPGGNKQIVTQPESTIEAVRQLL 128
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
++ PGG+I +VVY GHP G+ E +A+ + RSL K++ +NR P
Sbjct: 129 SVMKPGGVIVLVVYHGHPEGKRERDALLDYVRSLDQRRVHALKYEFINRQNNP 181
>gi|270291587|ref|ZP_06197807.1| SAM-dependent methyltransferase [Pediococcus acidilactici 7_4]
gi|270279906|gb|EFA25744.1| SAM-dependent methyltransferase [Pediococcus acidilactici 7_4]
Length = 187
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 102/179 (56%), Gaps = 11/179 (6%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
VV+ GD VVDAT GNG+DTL + +V S G V+ DIQ+ AL +T + L+K +
Sbjct: 16 VVQPGDHVVDATMGNGHDTLFLANLV---QSQGRVFSFDIQTAALSATEARLEKQLPDHQ 72
Query: 151 KGLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
V+L H ++ + V P S AV FNLGYLPGGDK +IT S +T A++ ++
Sbjct: 73 H--VQLIQDSHDQLTQYVDTPISGAV----FNLGYLPGGDKQIITHSASTIAAVQQCLQL 126
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG + +V Y GHPGG EL + F +L + C +++ +N+ P ++ +R
Sbjct: 127 LKVGGRVVLVCYYGHPGGAAELAKLLEFTANLDQHQFTCLRYEFINQVHQPPILLAIER 185
>gi|217964188|ref|YP_002349866.1| methylase protein [Listeria monocytogenes HCC23]
gi|386008435|ref|YP_005926713.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes L99]
gi|386027039|ref|YP_005947815.1| putative bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone
methylase/ S-adenosylmethionine:2-DMK methyltransferas
[Listeria monocytogenes M7]
gi|217333458|gb|ACK39252.1| methylase protein [Listeria monocytogenes HCC23]
gi|307571245|emb|CAR84424.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes L99]
gi|336023620|gb|AEH92757.1| putative rRNA methylase [Listeria monocytogenes M7]
Length = 191
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 109/185 (58%), Gaps = 9/185 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD V+DATCGNG+DTL++ ++V G V G DIQ A+ +T + L+
Sbjct: 10 AHDTLRKVVRPGDYVIDATCGNGHDTLLLAELVGIN---GHVLGFDIQQVAVDATKARLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++ V+L H+R+ V S VR FNLGYLPGGDK + TT+++T ++
Sbjct: 67 NAGVSSQ---VELVCASHARIP--VYTSRPVRAAIFNLGYLPGGDKEITTTADSTLESIG 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLV 262
++L GG+I +V+Y GHP G+ E +AV F ++ D+ +Q +N + AP ++
Sbjct: 122 HLMQLLEVGGVIILVIYHGHPAGKLEKDAVVTFCEAIPQQDFHVLSYQFINQKNDAPFVI 181
Query: 263 FLFKR 267
+ KR
Sbjct: 182 VIEKR 186
>gi|384044568|ref|YP_005492585.1| MraW methylase family SAM-dependent methyltransferase [Bacillus
megaterium WSH-002]
gi|345442259|gb|AEN87276.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
megaterium WSH-002]
Length = 189
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 108/196 (55%), Gaps = 17/196 (8%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+T A V GD +DAT GNG+DTL + +V D G VYG DIQ +
Sbjct: 8 PFARTLLTNA--------VAAGDVAIDATAGNGHDTLFLANLVGD---TGHVYGFDIQPQ 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
A+++T L T EK V L HS + ++P S R+ FNLGYLPGGDK +
Sbjct: 57 AIQATQQRL--TEHHVEK-RVTLIQESHSNIN-MLPHSINGRVTGAVFNLGYLPGGDKDI 112
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+TTSETT A+E +L P G+I +V+Y GH G++E + + + ++L + +++
Sbjct: 113 VTTSETTISAIEQLLDLLAPEGVIVLVIYHGHEQGKQERDDLLTYVQNLDQKNVHVLQYR 172
Query: 252 MLNRPLAPVLVFLFKR 267
+N+ P + ++
Sbjct: 173 FMNQQNNPPFIIAIEK 188
>gi|433462484|ref|ZP_20420069.1| rRNA methylase YtqB [Halobacillus sp. BAB-2008]
gi|432188824|gb|ELK45975.1| rRNA methylase YtqB [Halobacillus sp. BAB-2008]
Length = 190
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 103/183 (56%), Gaps = 8/183 (4%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K + +GD V+D TCGNG+DTL + +V D G VYG DIQ A+K+T+ L +
Sbjct: 13 LMKQFIEEGDVVIDGTCGNGHDTLFLTNLVGD---TGHVYGFDIQKVAVKNTTERLKEAG 69
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEA 204
++ + + HS+++ + + R+ A +NLGYLPG DK+VIT E T +++
Sbjct: 70 NENR---ATILHESHSQVKTSISREHKKRVQAAIYNLGYLPGSDKTVITKPEETLASVQE 126
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
IL PGGL+ +VVY GH GG EE +A+ + +L ++ + +N+ P +
Sbjct: 127 TLSILKPGGLLVLVVYHGHEGGEEEKDALLEYLTALDSKEYHVLHYGFINQKRKPPFILA 186
Query: 265 FKR 267
++
Sbjct: 187 VEK 189
>gi|333373496|ref|ZP_08465406.1| rRNA methylase [Desmospora sp. 8437]
gi|332969910|gb|EGK08912.1| rRNA methylase [Desmospora sp. 8437]
Length = 200
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 100/182 (54%), Gaps = 12/182 (6%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
K V+ G VDAT GNG DTL + + V +G V+G DIQ EAL T L +
Sbjct: 15 KGVLNPGSFAVDATVGNGNDTLFLARAVG---VSGLVHGFDIQQEALDRTEERLREA--- 68
Query: 149 AEKGLVKLFNMCHSRMEEIVPKS--TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
G V L H +M E +P VR V FNLGYLP G+ +VIT + TT ALE +
Sbjct: 69 GLAGRVTLHRAGHEQMAETLPPDWRGKVRAVMFNLGYLPRGNPTVITHAGTTLPALEQSL 128
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDW--ICCKFQMLNRPLAPVLVFL 264
L PGG++++++Y GHPGG+EE E V + L + +CC Q LNR AP+L +
Sbjct: 129 EWLAPGGILTVMLYTGHPGGKEEAEQVMNILKRLDARRFRTVCC--QTLNRQQAPLLTAV 186
Query: 265 FK 266
K
Sbjct: 187 AK 188
>gi|407455604|ref|YP_006734495.1| rRNA methylase family protein [Chlamydia psittaci GR9]
gi|405782147|gb|AFS20896.1| rRNA methylase family protein [Chlamydia psittaci GR9]
Length = 197
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 109/192 (56%), Gaps = 10/192 (5%)
Query: 75 LSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA 134
L G ++ ++ +++HV+ GDT VDATCGNG D L++ +++ G + D+Q EA
Sbjct: 8 LQGNVVRLSHE-IFQHVLTPGDTAVDATCGNGKDCLILARIL---QGKGKLVAYDVQREA 63
Query: 135 LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITT 194
L S L K+ S EK +++ M H + E + +L +NLGYLP GDKS+ T
Sbjct: 64 LTKASLLCSKSLSNEEKSIIEFKEMSHEHINE-----SGAKLFHYNLGYLPNGDKSITTL 118
Query: 195 SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN 254
+T M+++ A ++ P G++++V Y GH G E+ +VE A +L W F ++N
Sbjct: 119 EKTIIMSIQKALTLVAPQGVVTVVCYPGHAEGANEMCSVEGLACTLDPKLWEVGSFYIMN 178
Query: 255 RPLAPVLVFLFK 266
R AP L F+F+
Sbjct: 179 RYKAPRL-FVFR 189
>gi|374298658|ref|YP_005050297.1| rRNA methylase [Desulfovibrio africanus str. Walvis Bay]
gi|332551594|gb|EGJ48638.1| rRNA methylase [Desulfovibrio africanus str. Walvis Bay]
Length = 206
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 102/186 (54%), Gaps = 14/186 (7%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ +R GD VDAT GNG D +++ + V AG V+ DIQ A+ L
Sbjct: 14 ILHQALRPGDLAVDATLGNGRDAVLLAESV---GQAGKVFCFDIQEVAIHRARERL---- 66
Query: 147 SKAEKGL---VKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMA 201
A GL V++F H R+ E +P + VR FNLG+LPG D+ +IT ETT A
Sbjct: 67 --AAAGLLERVQIFRAGHERLTEHLPPESQGHVRAATFNLGFLPGSDRRIITRPETTLAA 124
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
L + PGG++S+ VY GHPGG+ E EA+ A+ SL+ W +++ +N+P+ +
Sbjct: 125 LAVLLPFMAPGGIVSIAVYTGHPGGQAEGEAIAAWCGSLAPTIWRVARYEQVNKPVNREV 184
Query: 262 VFLFKR 267
++L +R
Sbjct: 185 LYLLER 190
>gi|47093774|ref|ZP_00231523.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
H7858]
gi|254931605|ref|ZP_05264964.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|254993628|ref|ZP_05275818.1| hypothetical protein LmonocytoFSL_12013 [Listeria monocytogenes FSL
J2-064]
gi|405750012|ref|YP_006673478.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes ATCC 19117]
gi|417316466|ref|ZP_12103114.1| hypothetical protein LM1816_09707 [Listeria monocytogenes J1816]
gi|417317755|ref|ZP_12104362.1| hypothetical protein LM220_15815 [Listeria monocytogenes J1-220]
gi|424823424|ref|ZP_18248437.1| Methylase protein [Listeria monocytogenes str. Scott A]
gi|47017861|gb|EAL08645.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
H7858]
gi|293583158|gb|EFF95190.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|328465028|gb|EGF36307.1| hypothetical protein LM1816_09707 [Listeria monocytogenes J1816]
gi|328474002|gb|EGF44815.1| hypothetical protein LM220_15815 [Listeria monocytogenes J1-220]
gi|332312104|gb|EGJ25199.1| Methylase protein [Listeria monocytogenes str. Scott A]
gi|404219212|emb|CBY70576.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes ATCC 19117]
Length = 192
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 110/187 (58%), Gaps = 13/187 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD V+DATCGNG+DTL++ ++V G V G DIQ A+ +T + L+
Sbjct: 10 AHDTLRKVVRPGDYVIDATCGNGHDTLLLAELVGIN---GHVLGFDIQQMAVDATKARLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMA 201
++ V+L H+R +P T+ VR FNLGYLPGGDK + TT+++T +
Sbjct: 67 NAGVSSQ---VELVCASHAR----IPAYTSRPVRAAIFNLGYLPGGDKEITTTADSTLES 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPV 260
+ ++L GG+I +V+Y GHP G+ E +AV F ++ D+ +Q +N + AP
Sbjct: 120 IGHLMQLLEVGGVIILVIYHGHPAGKIEKDAVVTFCEAIPQQDFHVLSYQFINQKNDAPF 179
Query: 261 LVFLFKR 267
++ + KR
Sbjct: 180 VIIIEKR 186
>gi|310640916|ref|YP_003945674.1| rRNA methylase [Paenibacillus polymyxa SC2]
gi|386040016|ref|YP_005958970.1| hypothetical protein PPM_1326 [Paenibacillus polymyxa M1]
gi|309245866|gb|ADO55433.1| Putative rRNA methylase [Paenibacillus polymyxa SC2]
gi|343096054|emb|CCC84263.1| hypothetical protein PPM_1326 [Paenibacillus polymyxa M1]
Length = 193
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 102/182 (56%), Gaps = 12/182 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK--A 149
V+ GDT VDAT G G DTL + K G VYG DIQ AL L++ TS A
Sbjct: 18 VQPGDTAVDATVGTGADTLFLAKAAGKR---GRVYGFDIQQAALDYARRRLEEDTSPSLA 74
Query: 150 EKGLVKLFNMCHSRMEEIVPK--STAVRLVAFNLGYLP--GGDKSVITTSETTKMALEAA 205
E V L H M E+VP V V FNLGYLP G D +VIT +++T +ALEAA
Sbjct: 75 E---VSLLLQGHEHMREVVPDLLHGKVAAVMFNLGYLPSEGADPTVITHTDSTLVALEAA 131
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
++L P G+++ V+Y GH GGREE EAV +A +L V ++ L R +P +V +
Sbjct: 132 LQLLRPRGILTAVLYPGHAGGREEAEAVLHWASTLPVSSGQSIIYRQLQRDASPYVVAVE 191
Query: 266 KR 267
K+
Sbjct: 192 KK 193
>gi|406592661|ref|YP_006739841.1| rRNA methylase family protein [Chlamydia psittaci CP3]
gi|405788533|gb|AFS27276.1| rRNA methylase family protein [Chlamydia psittaci CP3]
Length = 197
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 110/192 (57%), Gaps = 10/192 (5%)
Query: 75 LSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA 134
L G ++ ++ + +++HV+ GDT VDATCGNG D L++ +++ G + D+Q EA
Sbjct: 8 LQGNVVRLS-HEIFQHVLTPGDTAVDATCGNGKDCLILARIL---QGKGKLVAYDVQREA 63
Query: 135 LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITT 194
L S L + S EK +++ M H + E + +L +NLGYLP GDKS+ T
Sbjct: 64 LTKASLLCSTSLSNEEKSIIEFKEMSHEHINE-----SGAKLFHYNLGYLPNGDKSITTL 118
Query: 195 SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN 254
+TT M+++ A ++ P G++++V Y GH G E+ +VE A +L W F ++N
Sbjct: 119 EKTTIMSIQKALTLVAPQGVVTVVCYPGHAEGANEMCSVEGLACTLDPKLWEVGSFYIMN 178
Query: 255 RPLAPVLVFLFK 266
R AP L F+F+
Sbjct: 179 RYKAPRL-FVFR 189
>gi|406593720|ref|YP_006740899.1| rRNA methylase family protein [Chlamydia psittaci NJ1]
gi|405789592|gb|AFS28334.1| rRNA methylase family protein [Chlamydia psittaci NJ1]
Length = 197
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 110/192 (57%), Gaps = 10/192 (5%)
Query: 75 LSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA 134
L G ++ ++ + +++HV+ GDT VDATCGNG D L++ +++ G + D+Q EA
Sbjct: 8 LQGNVVQLS-HEIFQHVLTPGDTAVDATCGNGKDCLILARIL---QGKGKLVAYDVQREA 63
Query: 135 LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITT 194
L S L + S EK +++ M H + E + +L +NLGYLP GDKS+ T
Sbjct: 64 LTKASLLCSTSLSNEEKSIIEFKEMSHEHISE-----SGAKLFHYNLGYLPNGDKSITTL 118
Query: 195 SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN 254
+TT M+++ A ++ P G++++V Y GH G E+ +VE A +L W F ++N
Sbjct: 119 EKTTIMSIQKALTLVAPQGVVTVVCYPGHAEGANEMCSVERLACTLDPKLWEVGSFYIMN 178
Query: 255 RPLAPVLVFLFK 266
R AP L F+F+
Sbjct: 179 RYKAPRL-FVFR 189
>gi|431064124|ref|ZP_19493471.1| rRNA methylase [Enterococcus faecium E1604]
gi|431131437|ref|ZP_19498988.1| rRNA methylase [Enterococcus faecium E1613]
gi|430565997|gb|ELB05120.1| rRNA methylase [Enterococcus faecium E1613]
gi|430568765|gb|ELB07795.1| rRNA methylase [Enterococcus faecium E1604]
Length = 188
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 105/180 (58%), Gaps = 6/180 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD VVDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 9 SHTLLQEILQPGDHVVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATREKLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + V LF H + E++ + ++ FNLGYLP DK++IT ETT+ A+E
Sbjct: 66 QHQLEER---VSLFLQGHETLGEVIAEQQDLKAGIFNLGYLPKSDKAIITMPETTRTAME 122
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+P G + +VVY GH GG +EL+ V++F L+ + + ++ +N+ P +++
Sbjct: 123 EILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLTQETYNVLNYRFINQKNQPPILY 182
>gi|47097507|ref|ZP_00235048.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
F6854]
gi|254829466|ref|ZP_05234153.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|254912336|ref|ZP_05262348.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936663|ref|ZP_05268360.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|386047313|ref|YP_005965645.1| methylase [Listeria monocytogenes J0161]
gi|47014122|gb|EAL05114.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
F6854]
gi|258601881|gb|EEW15206.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258609259|gb|EEW21867.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|293590317|gb|EFF98651.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|345534304|gb|AEO03745.1| methylase [Listeria monocytogenes J0161]
Length = 191
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 110/187 (58%), Gaps = 13/187 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD V+DATCGNG+DTL++ ++V G V G DIQ A+ +T + L+
Sbjct: 10 AHDTLRKVVRPGDYVIDATCGNGHDTLLLAELVGIN---GHVLGFDIQQVAVDATKARLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMA 201
++ V+L H+R +P T+ VR FNLGYLPGGDK + TT+++T +
Sbjct: 67 NAGVSSQ---VELVCASHAR----IPAYTSRPVRAAIFNLGYLPGGDKEITTTADSTLES 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPV 260
+ ++L GG+I +V+Y GHP G+ E +AV F ++ D+ +Q +N + AP
Sbjct: 120 IGHLMQLLEVGGVIILVIYHGHPAGKLEKDAVVTFCEAIPQQDFHVLSYQFINQKNDAPF 179
Query: 261 LVFLFKR 267
++ + KR
Sbjct: 180 VIVIEKR 186
>gi|407459590|ref|YP_006737693.1| rRNA methylase family protein [Chlamydia psittaci M56]
gi|405786624|gb|AFS25369.1| rRNA methylase family protein [Chlamydia psittaci M56]
Length = 197
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 109/192 (56%), Gaps = 10/192 (5%)
Query: 75 LSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA 134
L G ++ ++ +++HV+ GDT VDATCGNG D L++ +++ G + D+Q EA
Sbjct: 8 LQGNVVRLSHE-IFQHVLTPGDTAVDATCGNGKDCLILARIL---QGKGKLVAYDLQREA 63
Query: 135 LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITT 194
L S L + S EK +++ M H + E + +L +NLGYLP GDKS+ T
Sbjct: 64 LTKASLLCSTSLSNEEKSIIEFKEMSHEHINE-----SGAKLFHYNLGYLPNGDKSITTL 118
Query: 195 SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN 254
+TT M+++ A ++ P G++++V Y GH G E+ +VE A +L W F ++N
Sbjct: 119 EKTTIMSIQKALTLVAPQGVVTVVCYPGHAEGANEMCSVEGLACTLDPKLWEVGSFYIMN 178
Query: 255 RPLAPVLVFLFK 266
R AP L F+F+
Sbjct: 179 RYKAPRL-FVFR 189
>gi|290893255|ref|ZP_06556242.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|404408105|ref|YP_006690820.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes SLCC2376]
gi|290557237|gb|EFD90764.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|404242254|emb|CBY63654.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes SLCC2376]
Length = 191
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 111/187 (59%), Gaps = 13/187 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + + VVR GD V+DATCGNG+DTL++ ++V G V G DIQ A+ +T + L+
Sbjct: 10 AHDMLRKVVRPGDYVIDATCGNGHDTLLLAELVGIN---GHVLGFDIQQVAVDATKARLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMA 201
++ V+L H+R +P T+ VR FNLGYLPGGDK + TT+++T +
Sbjct: 67 NAGVSSQ---VELVCASHAR----IPAYTSRPVRAAIFNLGYLPGGDKEITTTADSTLES 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPV 260
+ ++L GG+I +V+Y GHP G+ E +AV F ++ D+ +Q +N+ AP
Sbjct: 120 IGHLIQLLEVGGVIILVIYHGHPAGKLEKDAVVTFCEAIPQQDFHVLSYQFINQKNDAPF 179
Query: 261 LVFLFKR 267
++ + KR
Sbjct: 180 VIVIEKR 186
>gi|15674247|ref|NP_268422.1| hypothetical protein L141634 [Lactococcus lactis subsp. lactis
Il1403]
gi|12725336|gb|AAK06363.1|AE006455_9 hypothetical protein L141634 [Lactococcus lactis subsp. lactis
Il1403]
Length = 196
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 107/196 (54%), Gaps = 20/196 (10%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + K +++ D VVDAT GNGYDT + ++ A+ VY D+Q EAL +T LD
Sbjct: 8 AHWMLKDIIKTNDVVVDATMGNGYDTQFLAELGAN------VYAFDVQEEALNATEKRLD 61
Query: 144 KTTSKA---EKGLVKLF-----NMC---HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVI 192
K EK L KL N+ H ++ E V + ++ FNLGYLP DKSV+
Sbjct: 62 DAGIKNQIFEKNLSKLLTEPSVNLVLSGHEKLSEYVKEP--IKAAIFNLGYLPKTDKSVV 119
Query: 193 TTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQM 252
T ++TT AL+A L+ GG I++++Y GH GG EE AV + SL DW +
Sbjct: 120 TKADTTLTALDALTNQLVVGGRIAIMIYYGHEGGMEEKNAVIKWTSSLPQKDWEVTSYAP 179
Query: 253 LNR-PLAPVLVFLFKR 267
LN+ P+LV + KR
Sbjct: 180 LNQIHTPPILVLIEKR 195
>gi|377809903|ref|YP_005005124.1| putative rRNA methylase [Pediococcus claussenii ATCC BAA-344]
gi|361056644|gb|AEV95448.1| putative rRNA methylase [Pediococcus claussenii ATCC BAA-344]
Length = 185
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 101/181 (55%), Gaps = 8/181 (4%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
V + ++ KGD V+DAT GNG+DT + K V + G VY DIQ +A+ T D+ T
Sbjct: 12 VLQEIINKGDNVIDATMGNGHDTQFLAKSVG---ATGHVYAFDIQQDAINHTK---DRLT 65
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
L N HS+++ V S + FNLGYLPG +KS+IT TT A+ +
Sbjct: 66 QLDLISQTTLINDSHSKIDNYV--SNPISAAIFNLGYLPGNNKSIITHFSTTIPAINSCL 123
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
R+L GG I++V Y GHPGG++EL+ + + + ++ +++ LN+ P ++ + +
Sbjct: 124 RLLKVGGRIAVVCYYGHPGGKDELDHITHYLSQIEQQEFSVLRYEFLNQINQPPILLIIE 183
Query: 267 R 267
+
Sbjct: 184 K 184
>gi|314940365|ref|ZP_07847527.1| rRNA methylase family protein [Enterococcus faecium TX0133a04]
gi|313640405|gb|EFS04985.1| rRNA methylase family protein [Enterococcus faecium TX0133a04]
Length = 196
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD VVDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 9 SHTLLQEILQPGDHVVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATRERLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + V LF H + E++ + ++ FNLGYLP DK++IT ETT+ A+E
Sbjct: 66 QRQLEER---VSLFLQGHETLGEVIAEQQNLKAGIFNLGYLPKSDKAIITMPETTRTAME 122
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+P G + +VVY GH GG +EL+ V++F L + + ++ +N+ P +++
Sbjct: 123 EILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLPQETYNVLNYRFINQKNQPPILY 182
>gi|261418138|ref|YP_003251820.1| rRNA methylase [Geobacillus sp. Y412MC61]
gi|319767902|ref|YP_004133403.1| rRNA methylase [Geobacillus sp. Y412MC52]
gi|261374595|gb|ACX77338.1| putative rRNA methylase [Geobacillus sp. Y412MC61]
gi|317112768|gb|ADU95260.1| rRNA methylase [Geobacillus sp. Y412MC52]
Length = 195
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 97/173 (56%), Gaps = 14/173 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V +GD VDAT GNG+DT+ + + V + G V+G DIQ EA+ + S+ L AE
Sbjct: 18 VNEGDIAVDATVGNGHDTVYLAERVGE---TGHVFGFDIQPEAITAASARL------AEH 68
Query: 152 GL---VKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
GL LF HS + E +P R+ FNLGYLPGG+K ++T E+T A+
Sbjct: 69 GLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGYLPGGNKQIVTQPESTIEAVRQLL 128
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
++ PGG+I +VVY GHP G+ E +A+ + RSL K++ +NR P
Sbjct: 129 SVMKPGGVIVLVVYHGHPEGKRERDALLDYVRSLDQRRVHALKYEFINRQNNP 181
>gi|405755824|ref|YP_006679288.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes SLCC2540]
gi|404225024|emb|CBY76386.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes SLCC2540]
Length = 192
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 109/187 (58%), Gaps = 13/187 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD V+DATCGNG+DTL++ ++V G V G DIQ A+ T + L+
Sbjct: 10 AHDTLRKVVRPGDYVIDATCGNGHDTLLLAELVG---INGHVLGFDIQQVAVDETKARLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMA 201
++ V+L H+R +P T+ VR FNLGYLPGGDK + TT+++T +
Sbjct: 67 NAGVSSQ---VELVCASHAR----IPAYTSRPVRAAIFNLGYLPGGDKEITTTADSTLES 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPV 260
+ ++L GG+I +V+Y GHP G+ E +AV F ++ D+ +Q +N + AP
Sbjct: 120 IGHLIQLLEVGGVIILVIYHGHPAGKIEKDAVVTFCEAIPQQDFHVLSYQFINQKNDAPF 179
Query: 261 LVFLFKR 267
++ + KR
Sbjct: 180 VIIIEKR 186
>gi|375009972|ref|YP_004983605.1| hypothetical protein [Geobacillus thermoleovorans CCB_US3_UF5]
gi|448239126|ref|YP_007403184.1| putative rRNA methylase [Geobacillus sp. GHH01]
gi|359288821|gb|AEV20505.1| hypothetical protein GTCCBUS3UF5_32030 [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|445207968|gb|AGE23433.1| putative rRNA methylase [Geobacillus sp. GHH01]
Length = 195
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 97/173 (56%), Gaps = 14/173 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V +GD VDAT GNG+DT+ + + V + G V+G DIQ EA+ + S+ L AE
Sbjct: 18 VNEGDIAVDATVGNGHDTVYLAERVGE---TGHVFGFDIQPEAITAASARL------AEH 68
Query: 152 GL---VKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
GL LF HS + E +P R+ FNLGYLPGG+K ++T E+T A+
Sbjct: 69 GLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGYLPGGNKQIVTQPESTIEAVRQLL 128
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
++ PGG+I +VVY GHP G+ E +A+ + RSL K++ +NR P
Sbjct: 129 SVMKPGGVIVLVVYHGHPEGKRERDALLDYVRSLDQRRVHALKYEFINRQNNP 181
>gi|381184642|ref|ZP_09893193.1| hypothetical protein KKC_14610 [Listeriaceae bacterium TTU M1-001]
gi|380315491|gb|EIA19036.1| hypothetical protein KKC_14610 [Listeriaceae bacterium TTU M1-001]
Length = 186
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 102/181 (56%), Gaps = 8/181 (4%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K +V GD V+DATCGNG+DTL + +V G VY DIQ EA++ T++ L +
Sbjct: 13 LLKKIVFAGDAVLDATCGNGHDTLFLANLVG---PNGTVYAFDIQEEAIEHTTTRLIENN 69
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
S + VKLF H+ + V + ++ +NLGYLPGGDKS+ T S++T ++
Sbjct: 70 SLNQ---VKLFKKSHAEISRYVLEP--IKAAIYNLGYLPGGDKSITTRSDSTIESITQVL 124
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
L+P G++ +V+Y GH G+ E A+ +A SL D+ ++ +N+ P + +
Sbjct: 125 EKLVPQGIVILVIYHGHDAGKAEKNAILKYAESLPQKDFHVLRYGFINQQNNPPFIVAIE 184
Query: 267 R 267
+
Sbjct: 185 K 185
>gi|293563986|ref|ZP_06678393.1| methyltransferase [Enterococcus faecium E1162]
gi|291604076|gb|EFF33603.1| methyltransferase [Enterococcus faecium E1162]
Length = 189
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD VVDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 9 SHTLLQEILQPGDHVVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATRERLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + V LF H + E++ + ++ FNLGYLP DK++IT ETT+ A+E
Sbjct: 66 QRQLEER---VSLFLQGHETLGEVIAEQQNLKAGIFNLGYLPKSDKAIITMPETTRTAME 122
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+P G + +VVY GH GG +EL+ V++F L + + ++ +N+ P +++
Sbjct: 123 EILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLPQETYNVLNYRFINQKNQPPILY 182
>gi|386043972|ref|YP_005962777.1| methylase [Listeria monocytogenes 10403S]
gi|404410964|ref|YP_006696552.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes SLCC5850]
gi|404413741|ref|YP_006699328.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes SLCC7179]
gi|345537206|gb|AEO06646.1| methylase [Listeria monocytogenes 10403S]
gi|404230790|emb|CBY52194.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes SLCC5850]
gi|404239440|emb|CBY60841.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes SLCC7179]
Length = 191
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 109/187 (58%), Gaps = 13/187 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD V+DATCGNG+DTL++ ++V G V G DIQ A+ +T + L+
Sbjct: 10 AHDTLRKVVRPGDYVIDATCGNGHDTLLLAELVGIN---GHVLGFDIQQVAVDATKARLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMA 201
++ V+L H+R +P T+ VR FNLGYLPGGDK + TT+++T +
Sbjct: 67 NAGVSSQ---VELVCASHAR----IPAYTSRPVRAAIFNLGYLPGGDKEITTTADSTLES 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPV 260
+ +L GG+I +V+Y GHP G++E +AV F ++ D+ + +N + AP
Sbjct: 120 IGHLMELLEVGGVIILVIYHGHPAGKQEKDAVMTFCEAIPQQDFHVLSYNFINQKNDAPF 179
Query: 261 LVFLFKR 267
++ + KR
Sbjct: 180 VIIIEKR 186
>gi|69244085|ref|ZP_00602621.1| Putative rRNA methylase [Enterococcus faecium DO]
gi|260562444|ref|ZP_05832954.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|261206890|ref|ZP_05921580.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289567067|ref|ZP_06447464.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|293569441|ref|ZP_06680737.1| methyltransferase [Enterococcus faecium E1071]
gi|294613891|ref|ZP_06693829.1| methyltransferase [Enterococcus faecium E1636]
gi|294619127|ref|ZP_06698619.1| methyltransferase [Enterococcus faecium E1679]
gi|294622187|ref|ZP_06701252.1| methyltransferase [Enterococcus faecium U0317]
gi|314943338|ref|ZP_07850113.1| rRNA methylase family protein [Enterococcus faecium TX0133C]
gi|314949262|ref|ZP_07852608.1| rRNA methylase family protein [Enterococcus faecium TX0082]
gi|314953920|ref|ZP_07856778.1| rRNA methylase family protein [Enterococcus faecium TX0133A]
gi|314993190|ref|ZP_07858571.1| rRNA methylase family protein [Enterococcus faecium TX0133B]
gi|314997352|ref|ZP_07862309.1| rRNA methylase family protein [Enterococcus faecium TX0133a01]
gi|383329903|ref|YP_005355787.1| rRNA methylase family protein [Enterococcus faecium Aus0004]
gi|389869717|ref|YP_006377140.1| rRNA methylase [Enterococcus faecium DO]
gi|406586146|ref|ZP_11061082.1| rRNA methylase family protein [Enterococcus sp. GMD2E]
gi|406590138|ref|ZP_11064534.1| rRNA methylase family protein [Enterococcus sp. GMD1E]
gi|410936360|ref|ZP_11368227.1| rRNA methylase [Enterococcus sp. GMD5E]
gi|415893213|ref|ZP_11550105.1| methyltransferase [Enterococcus faecium E4453]
gi|416135161|ref|ZP_11598461.1| methyltransferase [Enterococcus faecium E4452]
gi|424788995|ref|ZP_18215722.1| putative rRNA methylase [Enterococcus faecium V689]
gi|424811439|ref|ZP_18236697.1| putative rRNA methylase [Enterococcus faecium S447]
gi|424840568|ref|ZP_18265204.1| putative rRNA methylase [Enterococcus faecium R501]
gi|424860015|ref|ZP_18283985.1| putative rRNA methylase [Enterococcus faecium R499]
gi|424887113|ref|ZP_18310720.1| putative rRNA methylase [Enterococcus faecium R497]
gi|424951778|ref|ZP_18366845.1| putative rRNA methylase [Enterococcus faecium R496]
gi|424954328|ref|ZP_18369231.1| putative rRNA methylase [Enterococcus faecium R494]
gi|424957246|ref|ZP_18371983.1| putative rRNA methylase [Enterococcus faecium R446]
gi|424962308|ref|ZP_18376671.1| putative rRNA methylase [Enterococcus faecium P1986]
gi|424965800|ref|ZP_18379707.1| putative rRNA methylase [Enterococcus faecium P1190]
gi|424968013|ref|ZP_18381676.1| putative rRNA methylase [Enterococcus faecium P1140]
gi|424972881|ref|ZP_18386191.1| putative rRNA methylase [Enterococcus faecium P1139]
gi|424974244|ref|ZP_18387488.1| putative rRNA methylase [Enterococcus faecium P1137]
gi|424978239|ref|ZP_18391183.1| putative rRNA methylase [Enterococcus faecium P1123]
gi|424982540|ref|ZP_18395191.1| putative rRNA methylase [Enterococcus faecium ERV99]
gi|424984868|ref|ZP_18397382.1| putative rRNA methylase [Enterococcus faecium ERV69]
gi|424988277|ref|ZP_18400607.1| putative rRNA methylase [Enterococcus faecium ERV38]
gi|424991118|ref|ZP_18403290.1| putative rRNA methylase [Enterococcus faecium ERV26]
gi|424995693|ref|ZP_18407558.1| putative rRNA methylase [Enterococcus faecium ERV168]
gi|424997195|ref|ZP_18408961.1| putative rRNA methylase [Enterococcus faecium ERV165]
gi|425001515|ref|ZP_18413025.1| putative rRNA methylase [Enterococcus faecium ERV161]
gi|425004397|ref|ZP_18415710.1| putative rRNA methylase [Enterococcus faecium ERV102]
gi|425009093|ref|ZP_18420126.1| putative rRNA methylase [Enterococcus faecium ERV1]
gi|425010442|ref|ZP_18421392.1| putative rRNA methylase [Enterococcus faecium E422]
gi|425013891|ref|ZP_18424593.1| putative rRNA methylase [Enterococcus faecium E417]
gi|425017397|ref|ZP_18427902.1| putative rRNA methylase [Enterococcus faecium C621]
gi|425021577|ref|ZP_18431820.1| putative rRNA methylase [Enterococcus faecium C497]
gi|425023990|ref|ZP_18434082.1| putative rRNA methylase [Enterococcus faecium C1904]
gi|425033801|ref|ZP_18438740.1| putative rRNA methylase [Enterococcus faecium 515]
gi|425035896|ref|ZP_18440702.1| putative rRNA methylase [Enterococcus faecium 514]
gi|425039267|ref|ZP_18443822.1| putative rRNA methylase [Enterococcus faecium 513]
gi|425043426|ref|ZP_18447666.1| putative rRNA methylase [Enterococcus faecium 511]
gi|425045158|ref|ZP_18449274.1| putative rRNA methylase [Enterococcus faecium 510]
gi|425047350|ref|ZP_18451310.1| putative rRNA methylase [Enterococcus faecium 509]
gi|425053070|ref|ZP_18456634.1| putative rRNA methylase [Enterococcus faecium 506]
gi|425058867|ref|ZP_18462231.1| putative rRNA methylase [Enterococcus faecium 504]
gi|425061222|ref|ZP_18464474.1| putative rRNA methylase [Enterococcus faecium 503]
gi|427397570|ref|ZP_18890052.1| hypothetical protein HMPREF9307_02228 [Enterococcus durans
FB129-CNAB-4]
gi|430821764|ref|ZP_19440352.1| rRNA methylase [Enterococcus faecium E0045]
gi|430827384|ref|ZP_19445527.1| rRNA methylase [Enterococcus faecium E0164]
gi|430830027|ref|ZP_19448094.1| rRNA methylase [Enterococcus faecium E0269]
gi|430834143|ref|ZP_19452152.1| rRNA methylase [Enterococcus faecium E0679]
gi|430837604|ref|ZP_19455567.1| rRNA methylase [Enterococcus faecium E0680]
gi|430840283|ref|ZP_19458211.1| rRNA methylase [Enterococcus faecium E0688]
gi|430845630|ref|ZP_19463513.1| rRNA methylase [Enterococcus faecium E1050]
gi|430848344|ref|ZP_19466165.1| rRNA methylase [Enterococcus faecium E1133]
gi|430850230|ref|ZP_19467993.1| rRNA methylase [Enterococcus faecium E1185]
gi|430854242|ref|ZP_19471960.1| rRNA methylase [Enterococcus faecium E1258]
gi|430856245|ref|ZP_19473947.1| rRNA methylase [Enterococcus faecium E1392]
gi|430859227|ref|ZP_19476840.1| rRNA methylase [Enterococcus faecium E1552]
gi|430861007|ref|ZP_19478601.1| rRNA methylase [Enterococcus faecium E1573]
gi|430922059|ref|ZP_19485382.1| rRNA methylase [Enterococcus faecium E1575]
gi|430969349|ref|ZP_19487914.1| rRNA methylase [Enterococcus faecium E1576]
gi|431016520|ref|ZP_19490371.1| rRNA methylase [Enterococcus faecium E1578]
gi|431242707|ref|ZP_19503795.1| rRNA methylase [Enterococcus faecium E1622]
gi|431261947|ref|ZP_19505777.1| rRNA methylase [Enterococcus faecium E1623]
gi|431322866|ref|ZP_19509078.1| rRNA methylase [Enterococcus faecium E1626]
gi|431470603|ref|ZP_19514441.1| rRNA methylase [Enterococcus faecium E1630]
gi|431520978|ref|ZP_19516692.1| rRNA methylase [Enterococcus faecium E1634]
gi|431564876|ref|ZP_19519785.1| rRNA methylase [Enterococcus faecium E1731]
gi|431705103|ref|ZP_19525164.1| rRNA methylase [Enterococcus faecium E1904]
gi|431744341|ref|ZP_19533211.1| rRNA methylase [Enterococcus faecium E2071]
gi|431747753|ref|ZP_19536523.1| rRNA methylase [Enterococcus faecium E2134]
gi|431750414|ref|ZP_19539132.1| rRNA methylase [Enterococcus faecium E2297]
gi|431755377|ref|ZP_19544027.1| rRNA methylase [Enterococcus faecium E2883]
gi|431761344|ref|ZP_19549918.1| rRNA methylase [Enterococcus faecium E3346]
gi|431766582|ref|ZP_19555058.1| rRNA methylase [Enterococcus faecium E4215]
gi|431769045|ref|ZP_19557474.1| rRNA methylase [Enterococcus faecium E1321]
gi|431771710|ref|ZP_19560089.1| rRNA methylase [Enterococcus faecium E1644]
gi|431773271|ref|ZP_19561599.1| rRNA methylase [Enterococcus faecium E2369]
gi|431777949|ref|ZP_19566189.1| rRNA methylase [Enterococcus faecium E2560]
gi|431780687|ref|ZP_19568859.1| rRNA methylase [Enterococcus faecium E4389]
gi|431783753|ref|ZP_19571845.1| rRNA methylase [Enterococcus faecium E6012]
gi|431786854|ref|ZP_19574850.1| rRNA methylase [Enterococcus faecium E6045]
gi|447913791|ref|YP_007395203.1| SAM-dependent methyltransferase, MraW methylase family
[Enterococcus faecium NRRL B-2354]
gi|68196542|gb|EAN10968.1| Putative rRNA methylase [Enterococcus faecium DO]
gi|260073129|gb|EEW61474.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|260078868|gb|EEW66569.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289161146|gb|EFD09049.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|291587861|gb|EFF19713.1| methyltransferase [Enterococcus faecium E1071]
gi|291593256|gb|EFF24827.1| methyltransferase [Enterococcus faecium E1636]
gi|291594613|gb|EFF25998.1| methyltransferase [Enterococcus faecium E1679]
gi|291598284|gb|EFF29376.1| methyltransferase [Enterococcus faecium U0317]
gi|313588566|gb|EFR67411.1| rRNA methylase family protein [Enterococcus faecium TX0133a01]
gi|313592304|gb|EFR71149.1| rRNA methylase family protein [Enterococcus faecium TX0133B]
gi|313594119|gb|EFR72964.1| rRNA methylase family protein [Enterococcus faecium TX0133A]
gi|313597950|gb|EFR76795.1| rRNA methylase family protein [Enterococcus faecium TX0133C]
gi|313644361|gb|EFS08941.1| rRNA methylase family protein [Enterococcus faecium TX0082]
gi|364092260|gb|EHM34647.1| methyltransferase [Enterococcus faecium E4452]
gi|364092845|gb|EHM35172.1| methyltransferase [Enterococcus faecium E4453]
gi|378939597|gb|AFC64669.1| rRNA methylase family protein [Enterococcus faecium Aus0004]
gi|388534966|gb|AFK60158.1| rRNA methylase [Enterococcus faecium DO]
gi|402917089|gb|EJX37905.1| putative rRNA methylase [Enterococcus faecium S447]
gi|402920645|gb|EJX41142.1| putative rRNA methylase [Enterococcus faecium R501]
gi|402922857|gb|EJX43202.1| putative rRNA methylase [Enterococcus faecium V689]
gi|402926000|gb|EJX46075.1| putative rRNA methylase [Enterococcus faecium R499]
gi|402928899|gb|EJX48707.1| putative rRNA methylase [Enterococcus faecium R496]
gi|402933386|gb|EJX52824.1| putative rRNA methylase [Enterococcus faecium R497]
gi|402937081|gb|EJX56221.1| putative rRNA methylase [Enterococcus faecium R494]
gi|402941057|gb|EJX59815.1| putative rRNA methylase [Enterococcus faecium P1986]
gi|402942544|gb|EJX61120.1| putative rRNA methylase [Enterococcus faecium P1190]
gi|402944043|gb|EJX62491.1| putative rRNA methylase [Enterococcus faecium R446]
gi|402951984|gb|EJX69846.1| putative rRNA methylase [Enterococcus faecium P1139]
gi|402953130|gb|EJX70870.1| putative rRNA methylase [Enterococcus faecium P1140]
gi|402957105|gb|EJX74516.1| putative rRNA methylase [Enterococcus faecium P1137]
gi|402960595|gb|EJX77721.1| putative rRNA methylase [Enterococcus faecium ERV99]
gi|402962889|gb|EJX79795.1| putative rRNA methylase [Enterococcus faecium P1123]
gi|402967627|gb|EJX84164.1| putative rRNA methylase [Enterococcus faecium ERV69]
gi|402972546|gb|EJX88744.1| putative rRNA methylase [Enterococcus faecium ERV38]
gi|402976620|gb|EJX92495.1| putative rRNA methylase [Enterococcus faecium ERV168]
gi|402977610|gb|EJX93412.1| putative rRNA methylase [Enterococcus faecium ERV26]
gi|402986298|gb|EJY01430.1| putative rRNA methylase [Enterococcus faecium ERV161]
gi|402986660|gb|EJY01773.1| putative rRNA methylase [Enterococcus faecium ERV165]
gi|402989485|gb|EJY04409.1| putative rRNA methylase [Enterococcus faecium ERV102]
gi|402990475|gb|EJY05346.1| putative rRNA methylase [Enterococcus faecium ERV1]
gi|402999959|gb|EJY14119.1| putative rRNA methylase [Enterococcus faecium E422]
gi|402999979|gb|EJY14137.1| putative rRNA methylase [Enterococcus faecium E417]
gi|403004415|gb|EJY18227.1| putative rRNA methylase [Enterococcus faecium C621]
gi|403006278|gb|EJY19936.1| putative rRNA methylase [Enterococcus faecium C497]
gi|403008271|gb|EJY21791.1| putative rRNA methylase [Enterococcus faecium C1904]
gi|403008280|gb|EJY21799.1| putative rRNA methylase [Enterococcus faecium 515]
gi|403016532|gb|EJY29346.1| putative rRNA methylase [Enterococcus faecium 514]
gi|403016752|gb|EJY29549.1| putative rRNA methylase [Enterococcus faecium 513]
gi|403020013|gb|EJY32578.1| putative rRNA methylase [Enterococcus faecium 511]
gi|403027756|gb|EJY39626.1| putative rRNA methylase [Enterococcus faecium 510]
gi|403031669|gb|EJY43267.1| putative rRNA methylase [Enterococcus faecium 506]
gi|403034193|gb|EJY45658.1| putative rRNA methylase [Enterococcus faecium 509]
gi|403037199|gb|EJY48505.1| putative rRNA methylase [Enterococcus faecium 504]
gi|403041833|gb|EJY52822.1| putative rRNA methylase [Enterococcus faecium 503]
gi|404461583|gb|EKA07480.1| rRNA methylase family protein [Enterococcus sp. GMD2E]
gi|404469800|gb|EKA14519.1| rRNA methylase family protein [Enterococcus sp. GMD1E]
gi|410735306|gb|EKQ77220.1| rRNA methylase [Enterococcus sp. GMD5E]
gi|425722119|gb|EKU85017.1| hypothetical protein HMPREF9307_02228 [Enterococcus durans
FB129-CNAB-4]
gi|430438103|gb|ELA48588.1| rRNA methylase [Enterococcus faecium E0045]
gi|430443992|gb|ELA53904.1| rRNA methylase [Enterococcus faecium E0164]
gi|430479151|gb|ELA56420.1| rRNA methylase [Enterococcus faecium E0269]
gi|430485666|gb|ELA62566.1| rRNA methylase [Enterococcus faecium E0679]
gi|430487183|gb|ELA63950.1| rRNA methylase [Enterococcus faecium E0680]
gi|430489836|gb|ELA66408.1| rRNA methylase [Enterococcus faecium E0688]
gi|430495369|gb|ELA71548.1| rRNA methylase [Enterococcus faecium E1050]
gi|430535293|gb|ELA75710.1| rRNA methylase [Enterococcus faecium E1133]
gi|430535855|gb|ELA76246.1| rRNA methylase [Enterococcus faecium E1185]
gi|430539260|gb|ELA79518.1| rRNA methylase [Enterococcus faecium E1258]
gi|430543971|gb|ELA84021.1| rRNA methylase [Enterococcus faecium E1552]
gi|430545129|gb|ELA85116.1| rRNA methylase [Enterococcus faecium E1392]
gi|430550746|gb|ELA90524.1| rRNA methylase [Enterococcus faecium E1573]
gi|430553875|gb|ELA93550.1| rRNA methylase [Enterococcus faecium E1575]
gi|430554770|gb|ELA94342.1| rRNA methylase [Enterococcus faecium E1576]
gi|430559384|gb|ELA98740.1| rRNA methylase [Enterococcus faecium E1578]
gi|430571661|gb|ELB10543.1| rRNA methylase [Enterococcus faecium E1622]
gi|430576614|gb|ELB15257.1| rRNA methylase [Enterococcus faecium E1623]
gi|430578186|gb|ELB16759.1| rRNA methylase [Enterococcus faecium E1626]
gi|430583574|gb|ELB21933.1| rRNA methylase [Enterococcus faecium E1630]
gi|430585121|gb|ELB23422.1| rRNA methylase [Enterococcus faecium E1634]
gi|430589675|gb|ELB27801.1| rRNA methylase [Enterococcus faecium E1731]
gi|430596705|gb|ELB34527.1| rRNA methylase [Enterococcus faecium E1904]
gi|430604758|gb|ELB42189.1| rRNA methylase [Enterococcus faecium E2134]
gi|430605508|gb|ELB42905.1| rRNA methylase [Enterococcus faecium E2071]
gi|430609642|gb|ELB46825.1| rRNA methylase [Enterococcus faecium E2297]
gi|430616922|gb|ELB53813.1| rRNA methylase [Enterococcus faecium E2883]
gi|430621485|gb|ELB58246.1| rRNA methylase [Enterococcus faecium E3346]
gi|430626076|gb|ELB62668.1| rRNA methylase [Enterococcus faecium E4215]
gi|430628130|gb|ELB64584.1| rRNA methylase [Enterococcus faecium E1321]
gi|430632874|gb|ELB69070.1| rRNA methylase [Enterococcus faecium E1644]
gi|430636888|gb|ELB72938.1| rRNA methylase [Enterococcus faecium E2369]
gi|430638443|gb|ELB74379.1| rRNA methylase [Enterococcus faecium E2560]
gi|430639075|gb|ELB74960.1| rRNA methylase [Enterococcus faecium E4389]
gi|430644558|gb|ELB80163.1| rRNA methylase [Enterococcus faecium E6012]
gi|430644894|gb|ELB80468.1| rRNA methylase [Enterococcus faecium E6045]
gi|445189500|gb|AGE31142.1| SAM-dependent methyltransferase, MraW methylase family
[Enterococcus faecium NRRL B-2354]
Length = 188
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD VVDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 9 SHTLLQEILQPGDHVVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATRERLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + V LF H + E++ + ++ FNLGYLP DK++IT ETT+ A+E
Sbjct: 66 QRQLEER---VSLFLQGHETLGEVIAEQQNLKAGIFNLGYLPKSDKAIITMPETTRTAME 122
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+P G + +VVY GH GG +EL+ V++F L + + ++ +N+ P +++
Sbjct: 123 EILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLPQETYNVLNYRFINQKNQPPILY 182
>gi|406594457|ref|YP_006741937.1| rRNA methylase family protein [Chlamydia psittaci MN]
gi|405782889|gb|AFS21637.1| rRNA methylase family protein [Chlamydia psittaci MN]
Length = 197
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 109/192 (56%), Gaps = 10/192 (5%)
Query: 75 LSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA 134
L G ++ ++ +++HV+ GDT VDATCGNG D L++ +++ G + D+Q EA
Sbjct: 8 LQGNVVRLSHE-IFQHVLTPGDTAVDATCGNGKDCLILARIL---QGKGKLVAYDVQREA 63
Query: 135 LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITT 194
L S L + S EK +++ M H + E + +L +NLGYLP GD+S+ T
Sbjct: 64 LTKASLLCSTSLSNEEKSIIEFKEMSHEHINE-----SGAKLFHYNLGYLPNGDRSITTL 118
Query: 195 SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN 254
+TT M+++ A ++ P G++++V Y GH G E+ +VE A +L W F ++N
Sbjct: 119 EKTTIMSIQKALTLVAPQGVVTVVCYPGHAEGANEMCSVEGLACTLDPKLWEVGSFYIMN 178
Query: 255 RPLAPVLVFLFK 266
R AP L F+F+
Sbjct: 179 RYKAPRL-FVFR 189
>gi|297528996|ref|YP_003670271.1| rRNA methylase [Geobacillus sp. C56-T3]
gi|297252248|gb|ADI25694.1| putative rRNA methylase [Geobacillus sp. C56-T3]
Length = 195
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 97/173 (56%), Gaps = 14/173 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V +GD VDAT GNG+DT+ + + V + G V+G DIQ EA+ + S+ L AE
Sbjct: 18 VNEGDIAVDATVGNGHDTVYLAERVGE---TGHVFGFDIQPEAITAASARL------AEH 68
Query: 152 GL---VKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
GL LF HS + E +P R+ FNLGYLPGG+K ++T E+T A+
Sbjct: 69 GLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGYLPGGNKQIVTQPESTIEAVRQLL 128
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
++ PGG+I +VVY GHP G+ E +A+ + RSL K++ +NR P
Sbjct: 129 SVMKPGGVIVLVVYHGHPEGKRERDALLDYVRSLDQRRVHVLKYEFINRQNNP 181
>gi|205374580|ref|ZP_03227375.1| putative rRNA methylase [Bacillus coahuilensis m4-4]
Length = 190
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 108/187 (57%), Gaps = 9/187 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V KGD V+DAT GNG+DTL + ++V +E G V+ DIQ+EA+ ST L
Sbjct: 10 ARDLLQSAVDKGDIVIDATMGNGHDTLYLAQLVGEE---GHVFAFDIQNEAIDSTRMQLK 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMA 201
K S +G V L + H +++ VP V+ FNLGYLPGGDK ++TT+ TT A
Sbjct: 67 K--SGITEG-VTLIHRGHEHVKDAVPADVHGNVKGAIFNLGYLPGGDKRIVTTANTTIQA 123
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPV 260
+E+ I+ P G+I +V+Y GH G+EE + + + +L ++Q +N+ P
Sbjct: 124 IESLLSIMSPEGVIVLVIYHGHDEGKEERDKLLTYVENLDQKMAHVLRYQFINQQNHPPF 183
Query: 261 LVFLFKR 267
+V + KR
Sbjct: 184 IVAIEKR 190
>gi|118579003|ref|YP_900253.1| putative rRNA methylase [Pelobacter propionicus DSM 2379]
gi|118501713|gb|ABK98195.1| putative rRNA methylase [Pelobacter propionicus DSM 2379]
Length = 196
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 105/176 (59%), Gaps = 9/176 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ GD VDATCGNG+DTL++ +V +G V+ D+Q A+ +TS L + AE+
Sbjct: 27 IQPGDLAVDATCGNGHDTLLLANLVG---PSGRVWAFDVQERAISATSRRLGQA-GMAER 82
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V+L H + E VP T VR V FNLGYLPGGD+S+IT +TT+ AL+ A +L+P
Sbjct: 83 --VELILGGHESLAEQVP--TPVRGVMFNLGYLPGGDRSIITRPKTTRTALDQALSLLLP 138
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLFK 266
GG++++ Y GH GG E E + ++ +L + + +N P AP L+ + K
Sbjct: 139 GGILAVTAYPGHAGGDCEEEMLREWSATLPQPLFHAWRMGQVNTPPGAPYLILIQK 194
>gi|138896384|ref|YP_001126837.1| hypothetical protein GTNG_2747 [Geobacillus thermodenitrificans
NG80-2]
gi|134267897|gb|ABO68092.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
Length = 191
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 106/190 (55%), Gaps = 15/190 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V +GD +DAT GNG+DT+ + ++V D +G V+G DIQ EA+ +T++ L
Sbjct: 10 ARFLLERAVTEGDLAIDATVGNGHDTVYLAELVGD---SGHVFGFDIQPEAIAATTARL- 65
Query: 144 KTTSKAEKGL---VKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETT 198
+E+GL V LF HS + +P R+ FNLGYLPGGDK ++T E
Sbjct: 66 -----SEQGLLDRVTLFQQSHSELLTALPSDVYGRIGGAVFNLGYLPGGDKQIVTQPEYA 120
Query: 199 KMA-LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
+ + + I+ PGG+I +VVY GHP G+ E +A+ + RSL K++ LNR
Sbjct: 121 RFSRISRFLSIMKPGGVIVLVVYHGHPEGKIERDALLDYVRSLDQQHTHVLKYEFLNRRN 180
Query: 258 APVLVFLFKR 267
P + ++
Sbjct: 181 DPPFIIALEK 190
>gi|427442228|ref|ZP_18925569.1| SAM-dependent methyltransferase [Pediococcus lolii NGRI 0510Q]
gi|425786769|dbj|GAC46357.1| SAM-dependent methyltransferase [Pediococcus lolii NGRI 0510Q]
Length = 187
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 102/179 (56%), Gaps = 11/179 (6%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
VV+ GD VVDAT GNG+DTL + +V S G V+ DIQ+ AL +T + L+K +
Sbjct: 16 VVQPGDHVVDATMGNGHDTLFLANLV---QSQGRVFSFDIQAAALSATEARLEKQLPDHQ 72
Query: 151 KGLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
V+L H ++ + V P S AV FNLGYLPGG+K +IT S +T A++ ++
Sbjct: 73 H--VQLIQDSHDQLAQYVDTPISGAV----FNLGYLPGGNKQIITHSASTIAAVQQCLQL 126
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG + +V Y GHPGG EL + F +L + C +++ +N+ P ++ +R
Sbjct: 127 LKVGGRVVLVCYYGHPGGAAELAKLLEFTANLDQHQFTCLRYEFINQVHQPPILLAIER 185
>gi|410858713|ref|YP_006974653.1| conserved hypothetical protein [Chlamydia psittaci 01DC12]
gi|410811608|emb|CCO02261.1| conserved hypothetical protein [Chlamydia psittaci 01DC12]
Length = 198
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 109/192 (56%), Gaps = 10/192 (5%)
Query: 75 LSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA 134
L G ++ ++ +++HV+ GDT VDATCGNG D L++ +++ G + D+Q EA
Sbjct: 9 LQGNVVRLSHE-IFQHVLTPGDTAVDATCGNGKDCLILARIL---QGKGKLVAYDVQREA 64
Query: 135 LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITT 194
L S L + S EK +++ M H + E + +L +NLGYLP GD+S+ T
Sbjct: 65 LTKASLLCSTSLSNEEKSIIEFKEMSHEHINE-----SGAKLFHYNLGYLPNGDRSITTL 119
Query: 195 SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN 254
+TT M+++ A ++ P G++++V Y GH G E+ +VE A +L W F ++N
Sbjct: 120 EKTTIMSIQKALTLVAPQGVVTVVCYPGHAEGANEMCSVEGLACTLDPKLWEVGSFYIMN 179
Query: 255 RPLAPVLVFLFK 266
R AP L F+F+
Sbjct: 180 RYKAPRL-FVFR 190
>gi|257880445|ref|ZP_05660098.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257883258|ref|ZP_05662911.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257886333|ref|ZP_05665986.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257891525|ref|ZP_05671178.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257894534|ref|ZP_05674187.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|257814673|gb|EEV43431.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257818916|gb|EEV46244.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257822189|gb|EEV49319.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257827885|gb|EEV54511.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257830913|gb|EEV57520.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
Length = 189
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD VVDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 10 SHTLLQEILQPGDHVVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATRERLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + V LF H + E++ + ++ FNLGYLP DK++IT ETT+ A+E
Sbjct: 67 QRQLEER---VSLFLQGHETLGEVIAEQQNLKAGIFNLGYLPKSDKAIITMPETTRTAME 123
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+P G + +VVY GH GG +EL+ V++F L + + ++ +N+ P +++
Sbjct: 124 EILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLPQETYNVLNYRFINQKNQPPILY 183
>gi|227550265|ref|ZP_03980314.1| rRNA methylase [Enterococcus faecium TX1330]
gi|227180590|gb|EEI61562.1| rRNA methylase [Enterococcus faecium TX1330]
Length = 189
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD VVDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 9 SHTLLQEILQPGDHVVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATREKLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + V LF H + E++ + ++ FNLGYLP DK++IT ETT+ A+E
Sbjct: 66 QHQLEER---VSLFLQGHETLGEVIAEQQDLKAGIFNLGYLPKSDKAIITMPETTRTAME 122
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+P G + +VVY GH GG +EL+ V++F L + + ++ +N+ P +++
Sbjct: 123 EILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLPQETYNVLNYRFINQKNQPPILY 182
>gi|46907893|ref|YP_014282.1| hypothetical protein LMOf2365_1686 [Listeria monocytogenes serotype
4b str. F2365]
gi|405752887|ref|YP_006676352.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes SLCC2378]
gi|424714540|ref|YP_007015255.1| Putative rRNA methylase ytqB [Listeria monocytogenes serotype 4b
str. LL195]
gi|46881162|gb|AAT04459.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b
str. F2365]
gi|404222087|emb|CBY73450.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes SLCC2378]
gi|424013724|emb|CCO64264.1| Putative rRNA methylase ytqB [Listeria monocytogenes serotype 4b
str. LL195]
Length = 192
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 109/187 (58%), Gaps = 13/187 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD V+DATCGNG+DTL++ ++V G V G DIQ A+ T + L+
Sbjct: 10 AHDTLRKVVRPGDYVIDATCGNGHDTLLLAELVG---INGHVLGFDIQQMAVDETKARLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMA 201
++ V+L H+R +P T+ VR FNLGYLPGGDK + TT+++T +
Sbjct: 67 NAGVSSQ---VELVCASHAR----IPAYTSRPVRAAIFNLGYLPGGDKEITTTADSTLES 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPV 260
+ ++L GG++ +V+Y GHP G+ E +AV F ++ D+ +Q +N + AP
Sbjct: 120 IGHLMQLLEVGGVVILVIYHGHPAGKIEKDAVVTFCEAIPQQDFHVLSYQFINQKNDAPF 179
Query: 261 LVFLFKR 267
++ + KR
Sbjct: 180 VIIIEKR 186
>gi|357405338|ref|YP_004917262.1| rRNA methylase [Methylomicrobium alcaliphilum 20Z]
gi|351718003|emb|CCE23668.1| putative rRNA methylase [Methylomicrobium alcaliphilum 20Z]
Length = 173
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 91/152 (59%), Gaps = 8/152 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ GD +DAT GNG+DTL + + V G V G DIQ A+ T S L++ T +
Sbjct: 1 MQAGDYAIDATVGNGHDTLFLARHVG---PGGIVLGFDIQQSAIDKTRSRLEQETIDTQ- 56
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+LF + H+ M I+P R+ V FNLGYLPGGDK +IT ++TT AL A R+L
Sbjct: 57 --VELFRVSHAEMTNIIPMQFHGRIKAVMFNLGYLPGGDKLLITRTDTTIAALNQALRML 114
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLS 241
P GL++++ Y GHPGG +E + V+ + L
Sbjct: 115 APDGLLTILAYPGHPGGDQEADEVDKWCADLE 146
>gi|257900323|ref|ZP_05679976.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|257838235|gb|EEV63309.1| conserved hypothetical protein [Enterococcus faecium Com15]
Length = 189
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD VVDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 10 SHTLLQEILQPGDHVVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATREKLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + V LF H + E++ + ++ FNLGYLP DK++IT ETT+ A+E
Sbjct: 67 QHQLEER---VSLFLQGHETLGEVIAEQQDLKAGIFNLGYLPKSDKAIITMPETTRTAME 123
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+P G + +VVY GH GG +EL+ V++F L + + ++ +N+ P +++
Sbjct: 124 EILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLPQETYNVLNYRFINQKNQPPILY 183
>gi|293571991|ref|ZP_06683004.1| SAM-dependent methyltransferase [Enterococcus faecium E980]
gi|430842867|ref|ZP_19460774.1| rRNA methylase [Enterococcus faecium E1007]
gi|431602216|ref|ZP_19522592.1| rRNA methylase [Enterococcus faecium E1861]
gi|431739300|ref|ZP_19528235.1| rRNA methylase [Enterococcus faecium E1972]
gi|431742439|ref|ZP_19531332.1| rRNA methylase [Enterococcus faecium E2039]
gi|291607915|gb|EFF37224.1| SAM-dependent methyltransferase [Enterococcus faecium E980]
gi|430492578|gb|ELA68942.1| rRNA methylase [Enterococcus faecium E1007]
gi|430589984|gb|ELB28076.1| rRNA methylase [Enterococcus faecium E1861]
gi|430596028|gb|ELB33885.1| rRNA methylase [Enterococcus faecium E1972]
gi|430600197|gb|ELB37855.1| rRNA methylase [Enterococcus faecium E2039]
Length = 188
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD VVDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 9 SHTLLQEILQPGDHVVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATREKLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + V LF H + E++ + ++ FNLGYLP DK++IT ETT+ A+E
Sbjct: 66 QHQLEER---VSLFLQGHETLGEVIAEQQDLKAGIFNLGYLPKSDKAIITMPETTRTAME 122
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+P G + +VVY GH GG +EL+ V++F L + + ++ +N+ P +++
Sbjct: 123 EILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLPQETYNVLNYRFINQKNQPPILY 182
>gi|293377844|ref|ZP_06624028.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
gi|424764604|ref|ZP_18192024.1| putative rRNA methylase [Enterococcus faecium TX1337RF]
gi|425055818|ref|ZP_18459284.1| putative rRNA methylase [Enterococcus faecium 505]
gi|431753576|ref|ZP_19542245.1| rRNA methylase [Enterococcus faecium E2620]
gi|431758744|ref|ZP_19547367.1| rRNA methylase [Enterococcus faecium E3083]
gi|431764074|ref|ZP_19552620.1| rRNA methylase [Enterococcus faecium E3548]
gi|292643528|gb|EFF61654.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
gi|402418694|gb|EJV50984.1| putative rRNA methylase [Enterococcus faecium TX1337RF]
gi|403033070|gb|EJY44596.1| putative rRNA methylase [Enterococcus faecium 505]
gi|430611609|gb|ELB48686.1| rRNA methylase [Enterococcus faecium E2620]
gi|430616559|gb|ELB53455.1| rRNA methylase [Enterococcus faecium E3083]
gi|430621378|gb|ELB58145.1| rRNA methylase [Enterococcus faecium E3548]
Length = 188
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD VVDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 9 SHTLLQEILQPGDHVVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATREKLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + V LF H + E++ + ++ FNLGYLP DK++IT ETT+ A+E
Sbjct: 66 QHQLEER---VSLFLQGHETLGEVIAEQQDLKAGIFNLGYLPKSDKAIITMPETTRTAME 122
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+P G + +VVY GH GG +EL+ V++F L + + ++ +N+ P +++
Sbjct: 123 EILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLPQETYNVLNYRFINQKNQPPILY 182
>gi|410461575|ref|ZP_11315223.1| SAM-dependent methyltransferase [Bacillus azotoformans LMG 9581]
gi|409925662|gb|EKN62869.1| SAM-dependent methyltransferase [Bacillus azotoformans LMG 9581]
Length = 191
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 105/174 (60%), Gaps = 8/174 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + + V++GD +DAT GNG+DT+++ +V S+G VYG DIQ +AL+ L
Sbjct: 10 AHSLLEAAVKEGDIAIDATVGNGHDTVLLANLVG---SSGKVYGFDIQQDALEKAHLRLQ 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMA 201
+ + V+LF H ++E ++P ++ A FNLGYLPGGDK+++TT +++ A
Sbjct: 67 EYELQIR---VELFLKSHDQIESVIPPELHKKIKAAIFNLGYLPGGDKTIVTTPDSSISA 123
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR 255
++ ++ PGG+I +VVY GHP G+ E + + + +++ ++Q LN+
Sbjct: 124 VKQLLTMMPPGGIIVLVVYHGHPEGQIERDQLIQYVKTIDQKQAQVLQYQFLNQ 177
>gi|365156312|ref|ZP_09352634.1| hypothetical protein HMPREF1015_03240 [Bacillus smithii 7_3_47FAA]
gi|363627449|gb|EHL78341.1| hypothetical protein HMPREF1015_03240 [Bacillus smithii 7_3_47FAA]
Length = 191
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 104/186 (55%), Gaps = 8/186 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V GD VVDAT GNG+DT+ + +V ++ G V+ D+Q+EALK T L+
Sbjct: 10 ARTLLEKAVTPGDAVVDATMGNGHDTVFLANLVGEK---GKVFAFDVQTEALKKTKERLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMA 201
+ V L++ H + +P+ ++ A FNLGYLPG DKS++T ETTK A
Sbjct: 67 QHQLTDR---VVLYHRGHEELIRTIPEKFHGKITAAIFNLGYLPGSDKSIVTKPETTKEA 123
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
+E I+ PGG+I +VVY GH G+ E + + +F RS+ +Q +N+ P
Sbjct: 124 VEQLLEIMAPGGVIVLVVYHGHEEGKREKDELCSFVRSIDQSIAHVLLYQFINQINDPPF 183
Query: 262 VFLFKR 267
+ F++
Sbjct: 184 IIAFEK 189
>gi|257888992|ref|ZP_05668645.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257825055|gb|EEV51978.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
Length = 189
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD VVDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 10 SHTLLQEILQPGDHVVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATREKLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + V LF H + E++ + ++ FNLGYLP DK++IT ETT+ A+E
Sbjct: 67 QHQLEER---VSLFLQGHETLGEVIAEQQDLKAGIFNLGYLPKSDKAIITMPETTRTAME 123
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+P G + +VVY GH GG +EL+ V++F L + + ++ +N+ P +++
Sbjct: 124 EILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLPQETYNVLNYRFINQKNQPPILY 183
>gi|431388037|ref|ZP_19511643.1| rRNA methylase [Enterococcus faecium E1627]
gi|430580302|gb|ELB18775.1| rRNA methylase [Enterococcus faecium E1627]
Length = 188
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD +VDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 9 SHTLLQEILQPGDHIVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATRERLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + V LF H + E++ + ++ FNLGYLP DK++IT ETT+ A+E
Sbjct: 66 QRQLEER---VSLFLQGHETLGEVIAEQQNLKAGIFNLGYLPKSDKAIITMPETTRTAME 122
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+P G + +VVY GH GG +EL+ V++F L + + ++ +N+ P +++
Sbjct: 123 EILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLPQETYNVLNYRFINQKNQPPILY 182
>gi|379726974|ref|YP_005319159.1| MraW methylase family SAM-dependent methyltransferase
[Melissococcus plutonius DAT561]
gi|376317877|dbj|BAL61664.1| SAM-dependent methyltransferase, MraW methylase family
[Melissococcus plutonius DAT561]
Length = 187
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 96/170 (56%), Gaps = 8/170 (4%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS-LLDKTTSKAEKGL 153
GD VVDAT GNG DTL + K+V D+ G VY DIQ +AL+ T L++ +
Sbjct: 20 GDHVVDATMGNGNDTLFLAKLVGDK---GKVYAFDIQKQALERTRQRLIENQVIQC---- 72
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
+LF H +E+++P T + FNLGYLP DK ++T ETT A+E L G
Sbjct: 73 TELFQQGHETIEQVLPIETTLSAAIFNLGYLPKSDKEIVTLPETTIQAIEQLLIRLKSKG 132
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ +V+Y GH GG+EEL+AV + + L + + +Q +N+ P ++F
Sbjct: 133 RLLLVIYYGHSGGQEELKAVSYYCQQLPQEQFNVLSYQFINQKNQPPILF 182
>gi|332687128|ref|YP_004456902.1| MraW methylase family SAM-dependent methyltransferase
[Melissococcus plutonius ATCC 35311]
gi|332371137|dbj|BAK22093.1| SAM-dependent methyltransferase, MraW methylase family
[Melissococcus plutonius ATCC 35311]
Length = 187
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 98/174 (56%), Gaps = 8/174 (4%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS-LLDKTTSKAEKGL 153
GD VVDAT GNG DTL + K+V D+ G VY DIQ +AL+ T L++ +
Sbjct: 20 GDHVVDATMGNGNDTLFLAKLVGDK---GKVYAFDIQKQALERTRQRLIENQVIQC---- 72
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
+LF H +E+++P T + FNLGYLP DK ++T ETT A+E L G
Sbjct: 73 TELFQQGHETIEQVLPIETTLSAAIFNLGYLPKSDKEIVTLPETTIQAIEQLLIRLKSKG 132
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+ +V+Y GH GG+EEL+AV + + L + + +Q +N+ P ++F ++
Sbjct: 133 RLLLVIYYGHSGGQEELKAVSCYCQQLPQEQFNVLSYQFINQKNQPPILFCIEK 186
>gi|385831889|ref|YP_005869702.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis
CV56]
gi|418039351|ref|ZP_12677647.1| Transferase transferring one-carbon groups [Lactococcus lactis
subsp. cremoris CNCM I-1631]
gi|326407897|gb|ADZ64968.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis
CV56]
gi|354692144|gb|EHE91993.1| Transferase transferring one-carbon groups [Lactococcus lactis
subsp. cremoris CNCM I-1631]
Length = 196
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 107/196 (54%), Gaps = 20/196 (10%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + K +++ D VVDAT GNGYDT + ++ A+ VY D+Q EAL +T LD
Sbjct: 8 AHWMLKDIIKTNDVVVDATMGNGYDTQFLAELGAN------VYAFDVQEEALNATEKRLD 61
Query: 144 KTTSKA---EKGLVKLF-----NMC---HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVI 192
K EK L L N+ H ++ E V + ++ FNLGYLP DKSV+
Sbjct: 62 DAGIKNQIFEKNLSNLLTEPSVNLVLSGHEKLSEYVKEP--IKAAIFNLGYLPKTDKSVV 119
Query: 193 TTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQM 252
T ++TT AL+A L+ GG I++++Y GH GG EE +AV + SL DW +
Sbjct: 120 TKADTTLTALDALTNQLVVGGRIAIMIYYGHEGGMEEKDAVIKWTSSLPQKDWEVTSYAP 179
Query: 253 LNR-PLAPVLVFLFKR 267
LN+ P+LV + KR
Sbjct: 180 LNQIHTPPILVLIEKR 195
>gi|254824274|ref|ZP_05229275.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|254852289|ref|ZP_05241637.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|255521499|ref|ZP_05388736.1| hypothetical protein LmonocFSL_09805 [Listeria monocytogenes FSL
J1-175]
gi|404281226|ref|YP_006682124.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes SLCC2755]
gi|404287092|ref|YP_006693678.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes serotype 7 str. SLCC2482]
gi|258605595|gb|EEW18203.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|293593509|gb|EFG01270.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|404227861|emb|CBY49266.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes SLCC2755]
gi|404246021|emb|CBY04246.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes serotype 7 str. SLCC2482]
Length = 192
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 109/187 (58%), Gaps = 13/187 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD +DATCGNG+DTL++ ++V G V G DIQ A+ +T + L+
Sbjct: 10 AHDTLRKVVRPGDYAIDATCGNGHDTLLLAELVGIN---GHVLGFDIQQMAVDATKARLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMA 201
++ V+L H+R +P T+ VR FNLGYLPGGDK + TT+++T +
Sbjct: 67 NAGVSSQ---VELVCASHAR----IPAYTSRPVRAAIFNLGYLPGGDKEITTTADSTLES 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPV 260
+ ++L GG+I +V+Y GHP G+ E +AV F ++ D+ +Q +N + AP
Sbjct: 120 IGHLIQVLEVGGVIILVIYHGHPAGKIEKDAVVTFCEAIPQQDFHVLSYQFINQKNDAPF 179
Query: 261 LVFLFKR 267
++ + KR
Sbjct: 180 VIIIEKR 186
>gi|295113991|emb|CBL32628.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Enterococcus sp. 7L76]
Length = 187
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 18/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS---- 139
++ + K VV GD V+DAT GNG+DT + ++V S+G V+ DIQ EAL +T
Sbjct: 9 SHQLLKEVVEPGDFVIDATMGNGHDTAFLAELVG---SSGEVFAFDIQKEALINTEQKLT 65
Query: 140 --SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET 197
+LL +TT LF + H + ++ + T + FNLGYLP +K +IT T
Sbjct: 66 ELNLLPQTT---------LFPLGHEHLHAVLDEETEITAAIFNLGYLPKSNKEIITKPAT 116
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
TK AL+ L+ G I +VVY GH GG EEL+ V + ++L D + +++ +N+
Sbjct: 117 TKQALDGLLPHLVKGSRIILVVYYGHEGGSEELDLVTNYTQALPQDVYSVLRYEFINQKN 176
Query: 258 APVLVF 263
P ++F
Sbjct: 177 QPPVLF 182
>gi|431219509|ref|ZP_19501336.1| rRNA methylase [Enterococcus faecium E1620]
gi|430569559|gb|ELB08555.1| rRNA methylase [Enterococcus faecium E1620]
Length = 188
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD VVDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 9 SHTLLQEILQPGDHVVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATRERLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + V LF H + E++ + ++ FNLGYLP DK++IT ETT+ A+E
Sbjct: 66 QRQLEER---VSLFLQGHETLGEVIAEQQNLKAGIFNLGYLPKSDKAIITMPETTRTAME 122
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+P G + +VVY GH GG +EL+ V++F L + + ++ +N+ P +++
Sbjct: 123 EILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLLQETYNVLNYRFINQKNQPPILY 182
>gi|226224265|ref|YP_002758372.1| hypothetical protein Lm4b_01675 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|386732402|ref|YP_006205898.1| hypothetical protein MUO_08550 [Listeria monocytogenes 07PF0776]
gi|406704444|ref|YP_006754798.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes L312]
gi|225876727|emb|CAS05436.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|384391160|gb|AFH80230.1| hypothetical protein MUO_08550 [Listeria monocytogenes 07PF0776]
gi|406361474|emb|CBY67747.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
monocytogenes L312]
Length = 192
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 109/187 (58%), Gaps = 13/187 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD V+D TCGNG+DTL++ ++V G V G DIQ A+ +T + L+
Sbjct: 10 AHDTLRKVVRPGDYVIDTTCGNGHDTLLLAELVGIN---GHVLGFDIQQMAVDATKARLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMA 201
++ V+L H+R +P T+ VR FNLGYLPGGDK + TT+++T +
Sbjct: 67 NAGVSSQ---VELVCASHAR----IPAYTSRPVRAAIFNLGYLPGGDKEITTTADSTLES 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPV 260
+ ++L GG+I +V+Y GHP G+ E +AV F ++ D+ +Q +N + AP
Sbjct: 120 IGHLMQLLEVGGVIILVIYHGHPAGKIEKDAVVTFCEAIPQQDFHVLSYQFINQKNDAPF 179
Query: 261 LVFLFKR 267
++ + KR
Sbjct: 180 VIIIEKR 186
>gi|407795506|ref|ZP_11142465.1| rRNA methylase YtqB [Salimicrobium sp. MJ3]
gi|407020391|gb|EKE33104.1| rRNA methylase YtqB [Salimicrobium sp. MJ3]
Length = 190
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 106/183 (57%), Gaps = 9/183 (4%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K V +GD +DATCGNG+DTL + + + +G VYG DIQ +A+++T++ L +
Sbjct: 13 LMKKAVTEGDIAIDATCGNGHDTLFLASLTKE---SGHVYGFDIQKDAIEATAARLKENN 69
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMALEA 204
S + V L H+ + +P+ +R FNLG+LPG DK+V+TT E T A++
Sbjct: 70 SVHQ---VTLNEASHAEALKYIPEERHPNIRGAIFNLGFLPGSDKTVVTTPEHTIEAIDN 126
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVF 263
++ GGL+ +VVY GH GG++E E V +A +L K++ LN + AP +V
Sbjct: 127 ILSVMEKGGLVVLVVYHGHEGGKKEKEKVMEYAGNLDQRSVHVLKYEFLNQKNNAPFIVA 186
Query: 264 LFK 266
L K
Sbjct: 187 LEK 189
>gi|116492413|ref|YP_804148.1| SAM-dependent methyltransferase [Pediococcus pentosaceus ATCC
25745]
gi|421894556|ref|ZP_16325043.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
[Pediococcus pentosaceus IE-3]
gi|116102563|gb|ABJ67706.1| SAM-dependent methyltransferase [Pediococcus pentosaceus ATCC
25745]
gi|385272471|emb|CCG90415.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
[Pediococcus pentosaceus IE-3]
Length = 187
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 103/179 (57%), Gaps = 11/179 (6%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
+V+ GD V+DAT GNG+DTL + ++V S G V+ D+Q AL+ T +L +
Sbjct: 16 IVQPGDVVIDATMGNGHDTLFLSELV---QSTGRVFSFDVQKAALEQTRALFEHQHQTLI 72
Query: 151 KGLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
V+L + H +++ V P + A+ FNLGYLPGGDKS+IT +T A++ +
Sbjct: 73 N--VELIHASHDQIDHYVTEPITGAI----FNLGYLPGGDKSIITHPTSTISAVQQSLNQ 126
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG I +V Y GHPGG+EEL+ + +F L + C +++ +N+ P ++ +R
Sbjct: 127 LKIGGRIILVCYYGHPGGQEELQQLLSFVAELDQHHYSCLRYEFINQINNPPILLCIER 185
>gi|229546650|ref|ZP_04435375.1| rRNA methylase [Enterococcus faecalis TX1322]
gi|256854344|ref|ZP_05559708.1| SAM-dependent methyltransferase [Enterococcus faecalis T8]
gi|307276225|ref|ZP_07557354.1| rRNA methylase family protein [Enterococcus faecalis TX2134]
gi|307296183|ref|ZP_07576012.1| rRNA methylase family protein [Enterococcus faecalis TX0411]
gi|384517853|ref|YP_005705158.1| rRNA methylase family protein [Enterococcus faecalis 62]
gi|421512882|ref|ZP_15959674.1| SAM-dependent methyltransferase, MraW methylase family
[Enterococcus faecalis ATCC 29212]
gi|422685386|ref|ZP_16743605.1| rRNA methylase family protein [Enterococcus faecalis TX4000]
gi|422725088|ref|ZP_16781557.1| rRNA methylase family protein [Enterococcus faecalis TX0312]
gi|229308217|gb|EEN74204.1| rRNA methylase [Enterococcus faecalis TX1322]
gi|256709904|gb|EEU24948.1| SAM-dependent methyltransferase [Enterococcus faecalis T8]
gi|306496114|gb|EFM65695.1| rRNA methylase family protein [Enterococcus faecalis TX0411]
gi|306507081|gb|EFM76222.1| rRNA methylase family protein [Enterococcus faecalis TX2134]
gi|315029896|gb|EFT41828.1| rRNA methylase family protein [Enterococcus faecalis TX4000]
gi|315159950|gb|EFU03967.1| rRNA methylase family protein [Enterococcus faecalis TX0312]
gi|323479986|gb|ADX79425.1| rRNA methylase family protein [Enterococcus faecalis 62]
gi|401674003|gb|EJS80369.1| SAM-dependent methyltransferase, MraW methylase family
[Enterococcus faecalis ATCC 29212]
Length = 187
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 18/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS---- 139
++ + K VV GD V+DAT GNG+DT + ++V +G V+ DIQ EAL +T
Sbjct: 9 SHQLLKEVVEPGDFVIDATMGNGHDTAFLAELVG---PSGEVFAFDIQKEALINTEQKLT 65
Query: 140 --SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET 197
+LL +TT LF + H + ++ + T + FNLGYLP +K +IT T
Sbjct: 66 ELNLLPQTT---------LFPLGHEHLHAVLDEETEITAAIFNLGYLPKSNKEIITKPAT 116
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
TK AL+ L+ G I +VVY GH GG EEL+ V + +SL D + +++ +N+
Sbjct: 117 TKQALDGLLPHLVKGSRIILVVYYGHEGGSEELDLVTNYTQSLPQDVYSVLRYEFINQKN 176
Query: 258 APVLVF 263
P ++F
Sbjct: 177 QPPVLF 182
>gi|225181671|ref|ZP_03735111.1| putative rRNA methylase [Dethiobacter alkaliphilus AHT 1]
gi|225167652|gb|EEG76463.1| putative rRNA methylase [Dethiobacter alkaliphilus AHT 1]
Length = 184
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 97/176 (55%), Gaps = 14/176 (7%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL- 153
G VDATCGNG+DTL + + V G V DIQ +A+ +T L AE L
Sbjct: 19 GGVAVDATCGNGHDTLFLAQQVG---PGGTVLAFDIQQQAVDATKERL------AEAALL 69
Query: 154 --VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V+L+ H+ +++ V + + + FNLGYLPG D V+T +TT AL A L
Sbjct: 70 DRVQLYTDSHANLDDYV--QSGIDAMMFNLGYLPGSDHEVVTQPQTTVAALGVAVEKLNK 127
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
G+I++VVY GH GG EE +AV FA +L D+I ++Q++N+ P L+ R
Sbjct: 128 NGIITLVVYTGHAGGPEEYQAVRKFAATLPQRDYIVLEYQLINQINRPPLLLAITR 183
>gi|281492941|ref|YP_003354921.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis
KF147]
gi|281376593|gb|ADA66079.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis
KF147]
Length = 196
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 106/196 (54%), Gaps = 20/196 (10%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + K +++ D VVDAT GNGYDT + ++ A+ VY D+Q EAL +T LD
Sbjct: 8 AHWMLKDIIKTNDVVVDATMGNGYDTQFLAELGAN------VYAFDVQEEALNATEKRLD 61
Query: 144 KTTSKA---EKGLVKLF-----NMC---HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVI 192
K EK L L N+ H ++ E V + ++ FNLGYLP DKSV+
Sbjct: 62 DAGIKNQIFEKNLSNLLTEPSVNLVLSGHEKLSEYVKEP--IKAAIFNLGYLPKTDKSVV 119
Query: 193 TTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQM 252
T ++TT AL+A L+ GG I++++Y GH GG EE AV + SL DW +
Sbjct: 120 TKADTTLTALDALTNQLVVGGRIAIMIYYGHEGGMEEKNAVIKWTSSLPQKDWEVTSYAP 179
Query: 253 LNR-PLAPVLVFLFKR 267
LN+ P+LV + KR
Sbjct: 180 LNQIHTPPILVLIEKR 195
>gi|116873097|ref|YP_849878.1| methylase [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116741975|emb|CAK21099.1| methylase protein [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 191
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 106/187 (56%), Gaps = 13/187 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD V+DATCGNG+DTL++ +V G V G DIQ +A+ +T + L+
Sbjct: 10 AHDTLRKVVRPGDYVIDATCGNGHDTLLLADLVGIN---GHVLGFDIQQQAINATKTRLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPK--STAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ LV C S +PK + VR FNLGYLPGGDK + TT+++T +
Sbjct: 67 NAGVTPQVELV-----CASHA--FIPKYATKPVRAAIFNLGYLPGGDKEITTTADSTLES 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPV 260
L R+L GG+I +V+Y GHP G+ E +AV F ++ ++ + +N + AP
Sbjct: 120 LGHLMRLLEVGGVIILVIYHGHPAGKLEKDAVVTFCEAIPQQNFHVLSYNFINQKNDAPF 179
Query: 261 LVFLFKR 267
++ + KR
Sbjct: 180 VIVIEKR 186
>gi|16800839|ref|NP_471107.1| hypothetical protein lin1771 [Listeria innocua Clip11262]
gi|16414258|emb|CAC97002.1| lin1771 [Listeria innocua Clip11262]
Length = 191
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 107/185 (57%), Gaps = 9/185 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD V+DATCGNG+DTL++ ++V G V G DIQ A+ +T + L+
Sbjct: 10 AHDTLRKVVRSGDYVIDATCGNGHDTLLLAELVG---VNGHVLGFDIQQMAIDATKTRLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++ V+L H+ + E K VR FNLGYLPGGDK + TT+++T ++
Sbjct: 67 NAGVASQ---VELVCASHALIPEYATKP--VRAAIFNLGYLPGGDKEITTTADSTLESIG 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLV 262
++L GG+I +V+Y GHP G+ E +AV F ++ D+ + +N + AP ++
Sbjct: 122 HLMQLLEVGGVIIIVIYHGHPAGKVEKDAVLTFCEAIPQQDFHVLSYNFINQKNDAPFVI 181
Query: 263 FLFKR 267
+ KR
Sbjct: 182 IIEKR 186
>gi|300766053|ref|ZP_07076022.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017]
gi|300513255|gb|EFK40333.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017]
Length = 192
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 104/185 (56%), Gaps = 9/185 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD +DATCGNG+DTL++ ++V G V G DIQ A+ +T + L+
Sbjct: 10 AHDTLRKVVRPGDYAIDATCGNGHDTLLLAELVGIN---GHVLGFDIQQMAVDATKARLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++ LV C S S VR FNLGYLPGGDK + TT+++T ++
Sbjct: 67 NAGVSSQMELV-----CASHARIPAYTSRPVRAAIFNLGYLPGGDKEITTTADSTLESIG 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLV 262
++L GG+I +V+Y GHP G+ E +AV F ++ D+ +Q +N + AP ++
Sbjct: 122 HLIQVLEVGGVIILVIYHGHPAGKIEKDAVVTFCEAIPQQDFHVLSYQFINQKNDAPFVI 181
Query: 263 FLFKR 267
+ KR
Sbjct: 182 IIEKR 186
>gi|423100751|ref|ZP_17088458.1| putative rRNA methylase [Listeria innocua ATCC 33091]
gi|370792975|gb|EHN60818.1| putative rRNA methylase [Listeria innocua ATCC 33091]
Length = 191
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 107/185 (57%), Gaps = 9/185 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD V+DATCGNG+DTL++ ++V G V G DIQ A+ +T + L+
Sbjct: 10 AHDTLRKVVRSGDYVIDATCGNGHDTLLLAELVG---VNGHVLGFDIQQMAIDATKTRLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++ V+L H+ + E K VR FNLGYLPGGDK + TT+++T ++
Sbjct: 67 NAGVASQ---VELVCASHALIPEYATKP--VRAAIFNLGYLPGGDKEITTTADSTLESIG 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLV 262
++L GG+I +V+Y GHP G+ E +AV F ++ D+ + +N + AP ++
Sbjct: 122 HLMQLLEVGGVIILVIYHGHPAGKVEKDAVLTFCEAIPQQDFHVLSYNFINQKNDAPFVI 181
Query: 263 FLFKR 267
+ KR
Sbjct: 182 VIEKR 186
>gi|431050761|ref|ZP_19493430.1| rRNA methylase [Enterococcus faecium E1590]
gi|430560299|gb|ELA99603.1| rRNA methylase [Enterococcus faecium E1590]
Length = 188
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 103/180 (57%), Gaps = 6/180 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD VVDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 9 SHTLLQEILQPGDHVVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATREKLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + V LF H + E++ + ++ FNLGYLP DK +IT ETT+ A+E
Sbjct: 66 QHQLEER---VSLFLQGHETLGEVIAEQQDLKAGIFNLGYLPKSDKVIITMPETTRTAME 122
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+P G + +VVY GH GG +EL+ V++F L + + ++ +N+ P +++
Sbjct: 123 EILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLPQETYNVLNYRFINQKNQPPILY 182
>gi|374674337|dbj|BAL52228.1| hypothetical protein lilo_2232 [Lactococcus lactis subsp. lactis
IO-1]
Length = 196
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 105/196 (53%), Gaps = 20/196 (10%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + K ++ D VVDAT GNGYDT + ++ A+ VY D+Q EAL +T LD
Sbjct: 8 AHWMLKDIINTNDVVVDATMGNGYDTQFLAELGAN------VYAFDVQEEALNATEKRLD 61
Query: 144 KTTSKAE-----------KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVI 192
K + + LV L H ++ E V + ++ FNLGYLP DKSV+
Sbjct: 62 DAGIKNQIFEKNLSNLLTEPLVNLVLSGHEKLSEYVKEP--IKAAIFNLGYLPKTDKSVV 119
Query: 193 TTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQM 252
T ++TT AL+A L+ GG I++++Y GH GG EE +AV + SL DW +
Sbjct: 120 TKADTTLTALDALTNQLVVGGRIAIMIYYGHEGGMEEKDAVIKWTSSLPQKDWEVTSYAP 179
Query: 253 LNR-PLAPVLVFLFKR 267
LN+ P+LV + KR
Sbjct: 180 LNQIHTPPILVLIEKR 195
>gi|257897586|ref|ZP_05677239.1| rRNA methylase, partial [Enterococcus faecium Com12]
gi|257834151|gb|EEV60572.1| rRNA methylase [Enterococcus faecium Com12]
Length = 181
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 6/176 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD VVDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 10 SHTLLQEILQPGDHVVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATREKLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + V LF H + E++ + ++ FNLGYLP DK++IT ETT+ A+E
Sbjct: 67 QHQLEER---VSLFLQGHETLGEVIAEQQDLKAGIFNLGYLPKSDKAIITMPETTRTAME 123
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
+ L+P G + +VVY GH GG +EL+ V++F L + + ++ +N+ P
Sbjct: 124 EILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLPQETYNVLNYRFINQKNQP 179
>gi|408790605|ref|ZP_11202223.1| SAM-dependent methyltransferase, MraW methylase family
[Lactobacillus florum 2F]
gi|408520152|gb|EKK20246.1| SAM-dependent methyltransferase, MraW methylase family
[Lactobacillus florum 2F]
Length = 186
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 101/177 (57%), Gaps = 9/177 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V GDTVVDAT GNG+DTL + ++V G VY DIQ +A+++T +LL+ +
Sbjct: 18 VHPGDTVVDATAGNGHDTLFLAQLVGHH---GHVYSFDIQKKAIQATRALLENHHVETP- 73
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V L N H + V + A + FNLGYLPG D + TT++TT +A++ L
Sbjct: 74 --VSLINTGHENADHYVKEPLAAAI--FNLGYLPGADHQLATTAQTTVIAMQKLLANLRR 129
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFKR 267
G++ +VVYVGH G ++E +AV F L D+ ++Q +N+ P+L+ + KR
Sbjct: 130 HGVLLLVVYVGHHGSQQEQQAVLNFVTRLPQTDFHVMQYQFINQINHPPMLIAIEKR 186
>gi|312109860|ref|YP_003988176.1| rRNA methylase [Geobacillus sp. Y4.1MC1]
gi|336234280|ref|YP_004586896.1| rRNA methylase [Geobacillus thermoglucosidasius C56-YS93]
gi|311214961|gb|ADP73565.1| rRNA methylase [Geobacillus sp. Y4.1MC1]
gi|335361135|gb|AEH46815.1| rRNA methylase [Geobacillus thermoglucosidasius C56-YS93]
Length = 191
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 112/206 (54%), Gaps = 21/206 (10%)
Query: 67 LPLCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVY 126
+ L K P + TL+ +A N +GD VDAT GNG+DTL + + V + +G V+
Sbjct: 1 MKLAKILPFTRTLMDLAVN--------EGDIAVDATVGNGHDTLYLAQRVGE---SGHVF 49
Query: 127 GLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYL 184
G DIQ EA+ +TS+ L + V LF H ++ E +P R+ FNLGYL
Sbjct: 50 GFDIQKEAISATSARLQEHNMLQR---VTLFQASHDQLIEKIPAHYHGRITGAMFNLGYL 106
Query: 185 PGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDD 244
PGGDK ++T ++T A+E +I+ G+I +VVY GHP G E +A+ + +++
Sbjct: 107 PGGDKRIVTKPDSTIRAIEQLLQIMAKEGIIVIVVYHGHPEGAIERDALLHYTKAIDQKR 166
Query: 245 WICCKFQMLNR---PLAPVLVFLFKR 267
K++ +N+ P P ++ L KR
Sbjct: 167 AHVLKYEFINQMNNP--PFIIALEKR 190
>gi|430824552|ref|ZP_19443107.1| rRNA methylase [Enterococcus faecium E0120]
gi|430868476|ref|ZP_19482806.1| rRNA methylase [Enterococcus faecium E1574]
gi|430440991|gb|ELA51140.1| rRNA methylase [Enterococcus faecium E0120]
gi|430549141|gb|ELA88986.1| rRNA methylase [Enterococcus faecium E1574]
Length = 188
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 107/185 (57%), Gaps = 7/185 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD VVDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 9 SHTLLQEILQPGDHVVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATRERLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + V LF H + E++ + ++ FNLGYLP DK++IT ETT+ A+E
Sbjct: 66 QRQLEER---VSLFLQGHETLGEVIAEQQNLKAGIFNLGYLPKSDKAIITMPETTRTAME 122
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLV 262
+ L+P G + +VVY GH GG +EL+ V++F L + + ++ +N+ +P+L
Sbjct: 123 EILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLPQETYNVLNYRFINQKNQSPILY 182
Query: 263 FLFKR 267
+ K+
Sbjct: 183 CIEKK 187
>gi|408356227|ref|YP_006844758.1| hypothetical protein AXY_08640 [Amphibacillus xylanus NBRC 15112]
gi|407726998|dbj|BAM46996.1| hypothetical protein AXY_08640 [Amphibacillus xylanus NBRC 15112]
Length = 193
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 105/187 (56%), Gaps = 11/187 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS-LL 142
A+ + + V+ GD VVDATCGNG+DT+M+ + D G VY DIQ+EA+++T L
Sbjct: 9 AHHLIEQAVQPGDCVVDATCGNGHDTVMLSRATGD---LGKVYAFDIQAEAIENTKKRLA 65
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKM 200
D++ + E L + H R+ + ++ ++ A FNLGYLPG DKSVIT T
Sbjct: 66 DESITNVE-----LIHDSHDRIGYYIDQTENQQIGAAIFNLGYLPGSDKSVITKPNHTID 120
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
A++ L GGLI VVY GHPGG+EE +A+ + + L + C + +N+ P
Sbjct: 121 AIQQIIDRLKLGGLIVCVVYHGHPGGKEEKDALLEYVKQLDQKIFNCISYGFINQKNNPP 180
Query: 261 LVFLFKR 267
V ++
Sbjct: 181 FVIAIEK 187
>gi|423718907|ref|ZP_17693089.1| rRNA methylase [Geobacillus thermoglucosidans TNO-09.020]
gi|383367810|gb|EID45085.1| rRNA methylase [Geobacillus thermoglucosidans TNO-09.020]
Length = 191
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 112/206 (54%), Gaps = 21/206 (10%)
Query: 67 LPLCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVY 126
+ L K P + TL+ +A N +GD VDAT GNG+DTL + + V + +G V+
Sbjct: 1 MKLAKILPFTRTLMDLAVN--------EGDIAVDATVGNGHDTLYLAQRVGE---SGHVF 49
Query: 127 GLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYL 184
G DIQ EA+ +TS+ L + V LF H ++ E +P R+ FNLGYL
Sbjct: 50 GFDIQKEAIAATSARLQEHNMLQR---VTLFQASHDQLIEKIPAHYHGRITGAMFNLGYL 106
Query: 185 PGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDD 244
PGGDK ++T ++T A+E +I+ G+I +VVY GHP G E +A+ + +++
Sbjct: 107 PGGDKRIVTKPDSTIRAIEQLLQIMAKEGIIVIVVYHGHPEGAIERDALLHYTKAIDQKR 166
Query: 245 WICCKFQMLNR---PLAPVLVFLFKR 267
K++ +N+ P P ++ L KR
Sbjct: 167 AHVLKYEFINQMNNP--PFIIALEKR 190
>gi|257418397|ref|ZP_05595391.1| SAM-dependent methyltransferase [Enterococcus faecalis T11]
gi|422694332|ref|ZP_16752324.1| rRNA methylase family protein [Enterococcus faecalis TX4244]
gi|422736247|ref|ZP_16792511.1| rRNA methylase family protein [Enterococcus faecalis TX1341]
gi|257160225|gb|EEU90185.1| SAM-dependent methyltransferase [Enterococcus faecalis T11]
gi|315148160|gb|EFT92176.1| rRNA methylase family protein [Enterococcus faecalis TX4244]
gi|315166998|gb|EFU11015.1| rRNA methylase family protein [Enterococcus faecalis TX1341]
Length = 187
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 102/186 (54%), Gaps = 18/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS---- 139
++ + K VV GD V+DAT GNG+DT + ++V +G V+ DIQ EAL +T
Sbjct: 9 SHQLLKEVVEPGDFVIDATMGNGHDTAFLAELVG---PSGEVFAFDIQKEALINTEQKLT 65
Query: 140 --SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET 197
+LL +TT LF + H + ++ + T + FNLGYLP +K +IT T
Sbjct: 66 ELNLLSQTT---------LFPLGHEHLHAVLDEETEITAAIFNLGYLPKSNKEIITKPAT 116
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
TK AL+ L+ G I +VVY GH GG EEL+ V + ++L D + +++ +N+
Sbjct: 117 TKQALDGLLPHLVKGSRIILVVYYGHEGGSEELDLVTNYTQALPQDVYSVLRYEFINQKN 176
Query: 258 APVLVF 263
P ++F
Sbjct: 177 QPPVLF 182
>gi|29375384|ref|NP_814538.1| hypothetical protein EF0794 [Enterococcus faecalis V583]
gi|227517764|ref|ZP_03947813.1| rRNA methylase [Enterococcus faecalis TX0104]
gi|227554910|ref|ZP_03984957.1| rRNA methylase [Enterococcus faecalis HH22]
gi|256959922|ref|ZP_05564093.1| SAM-dependent methyltransferase [Enterococcus faecalis Merz96]
gi|293385211|ref|ZP_06631028.1| putative rRNA methylase [Enterococcus faecalis R712]
gi|293388325|ref|ZP_06632838.1| putative rRNA methylase [Enterococcus faecalis S613]
gi|300859754|ref|ZP_07105842.1| putative rRNA methylase [Enterococcus faecalis TUSoD Ef11]
gi|312907134|ref|ZP_07766126.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 512]
gi|312979287|ref|ZP_07790986.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 516]
gi|422696749|ref|ZP_16754701.1| rRNA methylase family protein [Enterococcus faecalis TX1346]
gi|422713734|ref|ZP_16770483.1| rRNA methylase family protein [Enterococcus faecalis TX0309A]
gi|422718340|ref|ZP_16775003.1| rRNA methylase family protein [Enterococcus faecalis TX0309B]
gi|422727886|ref|ZP_16784307.1| rRNA methylase family protein [Enterococcus faecalis TX0012]
gi|422732071|ref|ZP_16788417.1| rRNA methylase family protein [Enterococcus faecalis TX0645]
gi|422738921|ref|ZP_16794107.1| rRNA methylase family protein [Enterococcus faecalis TX2141]
gi|424678106|ref|ZP_18114950.1| putative rRNA methylase [Enterococcus faecalis ERV103]
gi|424681110|ref|ZP_18117904.1| putative rRNA methylase [Enterococcus faecalis ERV116]
gi|424685668|ref|ZP_18122360.1| putative rRNA methylase [Enterococcus faecalis ERV129]
gi|424687023|ref|ZP_18123678.1| putative rRNA methylase [Enterococcus faecalis ERV25]
gi|424689681|ref|ZP_18126245.1| putative rRNA methylase [Enterococcus faecalis ERV31]
gi|424693544|ref|ZP_18129974.1| putative rRNA methylase [Enterococcus faecalis ERV37]
gi|424698257|ref|ZP_18134555.1| putative rRNA methylase [Enterococcus faecalis ERV41]
gi|424701344|ref|ZP_18137518.1| putative rRNA methylase [Enterococcus faecalis ERV62]
gi|424702769|ref|ZP_18138913.1| putative rRNA methylase [Enterococcus faecalis ERV63]
gi|424711886|ref|ZP_18144093.1| putative rRNA methylase [Enterococcus faecalis ERV65]
gi|424717999|ref|ZP_18147269.1| putative rRNA methylase [Enterococcus faecalis ERV68]
gi|424722409|ref|ZP_18151469.1| putative rRNA methylase [Enterococcus faecalis ERV72]
gi|424723600|ref|ZP_18152558.1| putative rRNA methylase [Enterococcus faecalis ERV73]
gi|424733111|ref|ZP_18161680.1| putative rRNA methylase [Enterococcus faecalis ERV81]
gi|424746222|ref|ZP_18174471.1| putative rRNA methylase [Enterococcus faecalis ERV85]
gi|424755184|ref|ZP_18183070.1| putative rRNA methylase [Enterococcus faecalis ERV93]
gi|424760892|ref|ZP_18188480.1| putative rRNA methylase [Enterococcus faecalis R508]
gi|428766315|ref|YP_007152426.1| SAM-dependent methyltransferase [Enterococcus faecalis str.
Symbioflor 1]
gi|29342844|gb|AAO80608.1| conserved hypothetical protein [Enterococcus faecalis V583]
gi|227074787|gb|EEI12750.1| rRNA methylase [Enterococcus faecalis TX0104]
gi|227175966|gb|EEI56938.1| rRNA methylase [Enterococcus faecalis HH22]
gi|256950418|gb|EEU67050.1| SAM-dependent methyltransferase [Enterococcus faecalis Merz96]
gi|291077508|gb|EFE14872.1| putative rRNA methylase [Enterococcus faecalis R712]
gi|291082293|gb|EFE19256.1| putative rRNA methylase [Enterococcus faecalis S613]
gi|300850572|gb|EFK78321.1| putative rRNA methylase [Enterococcus faecalis TUSoD Ef11]
gi|310626845|gb|EFQ10128.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 512]
gi|311287945|gb|EFQ66501.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 516]
gi|315145295|gb|EFT89311.1| rRNA methylase family protein [Enterococcus faecalis TX2141]
gi|315151636|gb|EFT95652.1| rRNA methylase family protein [Enterococcus faecalis TX0012]
gi|315161913|gb|EFU05930.1| rRNA methylase family protein [Enterococcus faecalis TX0645]
gi|315174703|gb|EFU18720.1| rRNA methylase family protein [Enterococcus faecalis TX1346]
gi|315573416|gb|EFU85607.1| rRNA methylase family protein [Enterococcus faecalis TX0309B]
gi|315581334|gb|EFU93525.1| rRNA methylase family protein [Enterococcus faecalis TX0309A]
gi|402352161|gb|EJU87020.1| putative rRNA methylase [Enterococcus faecalis ERV116]
gi|402352255|gb|EJU87107.1| putative rRNA methylase [Enterococcus faecalis ERV103]
gi|402358130|gb|EJU92815.1| putative rRNA methylase [Enterococcus faecalis ERV129]
gi|402366096|gb|EJV00497.1| putative rRNA methylase [Enterococcus faecalis ERV25]
gi|402367130|gb|EJV01479.1| putative rRNA methylase [Enterococcus faecalis ERV31]
gi|402371966|gb|EJV06105.1| putative rRNA methylase [Enterococcus faecalis ERV62]
gi|402373019|gb|EJV07111.1| putative rRNA methylase [Enterococcus faecalis ERV41]
gi|402373978|gb|EJV08025.1| putative rRNA methylase [Enterococcus faecalis ERV37]
gi|402382624|gb|EJV16278.1| putative rRNA methylase [Enterococcus faecalis ERV65]
gi|402383143|gb|EJV16759.1| putative rRNA methylase [Enterococcus faecalis ERV68]
gi|402386201|gb|EJV19708.1| putative rRNA methylase [Enterococcus faecalis ERV63]
gi|402388915|gb|EJV22339.1| putative rRNA methylase [Enterococcus faecalis ERV72]
gi|402392219|gb|EJV25485.1| putative rRNA methylase [Enterococcus faecalis ERV81]
gi|402397590|gb|EJV30598.1| putative rRNA methylase [Enterococcus faecalis ERV85]
gi|402397632|gb|EJV30636.1| putative rRNA methylase [Enterococcus faecalis ERV73]
gi|402401276|gb|EJV34059.1| putative rRNA methylase [Enterococcus faecalis ERV93]
gi|402402743|gb|EJV35442.1| putative rRNA methylase [Enterococcus faecalis R508]
gi|427184488|emb|CCO71712.1| SAM-dependent methyltransferase [Enterococcus faecalis str.
Symbioflor 1]
Length = 187
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 102/186 (54%), Gaps = 18/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS---- 139
++ + K VV GD V+DAT GNG+DT + ++V +G V+ DIQ EAL +T
Sbjct: 9 SHQLLKEVVEPGDFVIDATMGNGHDTAFLAELVG---PSGEVFAFDIQKEALINTEQKLT 65
Query: 140 --SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET 197
+LL +TT LF + H + ++ + T + FNLGYLP +K +IT T
Sbjct: 66 ELNLLPQTT---------LFPLGHEHLHAVLDEETEITAAIFNLGYLPKSNKEIITKPTT 116
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
TK AL+ L+ G I +VVY GH GG EEL+ V + ++L D + +++ +N+
Sbjct: 117 TKQALDGLLPHLVKGSRIILVVYYGHEGGSEELDLVTNYTQALPQDVYSVLRYEFINQKN 176
Query: 258 APVLVF 263
P ++F
Sbjct: 177 QPPVLF 182
>gi|299823066|ref|ZP_07054952.1| rRNA methyltransferase [Listeria grayi DSM 20601]
gi|299816595|gb|EFI83833.1| rRNA methyltransferase [Listeria grayi DSM 20601]
Length = 187
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 104/184 (56%), Gaps = 8/184 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + K +R G V+D TCGNG DT+++ ++V + G V+ DIQS+A+++T
Sbjct: 10 AHDLLKKAIRPGGQVIDGTCGNGNDTVLLAELVGEN---GQVFAFDIQSQAIEATRQ--- 63
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K T + V L H ++ E V T ++ FNLGYLPGGDK + T + +T ++E
Sbjct: 64 KLTEQNLLAPVTLIQDSHDQISEHV--KTPIQAAIFNLGYLPGGDKQITTRASSTIKSVE 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L P G++ +VVY GHP G+ E E +EAF L ++ +++ +N+ P V
Sbjct: 122 QILALLEPNGILIIVVYHGHPEGKIEKEQLEAFTTELPQQEFHVLQYRYVNQKNNPPYVL 181
Query: 264 LFKR 267
+ ++
Sbjct: 182 VIEK 185
>gi|452821194|gb|EME28227.1| methylase protein [Galdieria sulphuraria]
Length = 237
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 111/221 (50%), Gaps = 23/221 (10%)
Query: 25 LLPFPAAALSKANVNVLRFSSSCCSAASFQQKQSCSTNNCTPLPLCKDSPLSGTLITIAA 84
LLP L + N+ ++ SS C AS+ K L LC+
Sbjct: 14 LLPLDCFRLHRVNMRGIKKSSYIC-CASYHSK----------LSLCQQKDF--------L 54
Query: 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144
+ VW V+ GD+ +DATCG G D+L + K+V + G + DIQ+ A+ T +LL
Sbjct: 55 DAVWSSHVQPGDSCIDATCGKGRDSLRIAKLVGPK---GFLLACDIQTYAIYQTEALLRS 111
Query: 145 TTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEA 204
++ V+ H + + V K ++RL+++NLGYLP GD+ + TT+ TT +LE+
Sbjct: 112 EIDPSQYPRVEFVCNSHEFLSKYV-KDNSIRLISYNLGYLPNGDRQIRTTARTTTNSLES 170
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDW 245
L G+IS+V YVGHPGG EE V + L D W
Sbjct: 171 LLPKLCHSGIISLVCYVGHPGGLEERSEVLNYVAKLPKDTW 211
>gi|229548736|ref|ZP_04437461.1| rRNA methylase [Enterococcus faecalis ATCC 29200]
gi|255971252|ref|ZP_05421838.1| SAM-dependent methyltransferase [Enterococcus faecalis T1]
gi|255973871|ref|ZP_05424457.1| SAM-dependent methyltransferase [Enterococcus faecalis T2]
gi|256617679|ref|ZP_05474525.1| SAM-dependent methyltransferase [Enterococcus faecalis ATCC 4200]
gi|256761557|ref|ZP_05502137.1| SAM-dependent methyltransferase [Enterococcus faecalis T3]
gi|256957340|ref|ZP_05561511.1| SAM-dependent methyltransferase [Enterococcus faecalis DS5]
gi|256964373|ref|ZP_05568544.1| SAM-dependent methyltransferase [Enterococcus faecalis HIP11704]
gi|257077664|ref|ZP_05572025.1| SAM-dependent methyltransferase [Enterococcus faecalis JH1]
gi|257081052|ref|ZP_05575413.1| SAM-dependent methyltransferase [Enterococcus faecalis E1Sol]
gi|257083713|ref|ZP_05578074.1| SAM-dependent methyltransferase [Enterococcus faecalis Fly1]
gi|257086149|ref|ZP_05580510.1| SAM-dependent methyltransferase [Enterococcus faecalis D6]
gi|257089221|ref|ZP_05583582.1| SAM-dependent methyltransferase [Enterococcus faecalis CH188]
gi|257421046|ref|ZP_05598036.1| SAM-dependent methyltransferase [Enterococcus faecalis X98]
gi|294779821|ref|ZP_06745207.1| conserved hypothetical protein [Enterococcus faecalis PC1.1]
gi|307270146|ref|ZP_07551463.1| rRNA methylase family protein [Enterococcus faecalis TX4248]
gi|307271402|ref|ZP_07552677.1| rRNA methylase family protein [Enterococcus faecalis TX0855]
gi|307284441|ref|ZP_07564604.1| rRNA methylase family protein [Enterococcus faecalis TX0860]
gi|307289509|ref|ZP_07569455.1| rRNA methylase family protein [Enterococcus faecalis TX0109]
gi|312901667|ref|ZP_07760937.1| rRNA methylase family protein [Enterococcus faecalis TX0470]
gi|312904994|ref|ZP_07764129.1| rRNA methylase family protein [Enterococcus faecalis TX0635]
gi|312951836|ref|ZP_07770726.1| rRNA methylase family protein [Enterococcus faecalis TX0102]
gi|384512492|ref|YP_005707585.1| rRNA methylase [Enterococcus faecalis OG1RF]
gi|397699184|ref|YP_006536972.1| rRNA methylase family protein [Enterococcus faecalis D32]
gi|422688863|ref|ZP_16747000.1| rRNA methylase family protein [Enterococcus faecalis TX0630]
gi|422692119|ref|ZP_16750144.1| rRNA methylase family protein [Enterococcus faecalis TX0031]
gi|422703890|ref|ZP_16761706.1| rRNA methylase family protein [Enterococcus faecalis TX1302]
gi|422707875|ref|ZP_16765412.1| rRNA methylase family protein [Enterococcus faecalis TX0043]
gi|422710583|ref|ZP_16767628.1| rRNA methylase family protein [Enterococcus faecalis TX0027]
gi|422721487|ref|ZP_16778076.1| rRNA methylase family protein [Enterococcus faecalis TX0017]
gi|422722369|ref|ZP_16778930.1| rRNA methylase family protein [Enterococcus faecalis TX2137]
gi|422867182|ref|ZP_16913782.1| putative rRNA methylase [Enterococcus faecalis TX1467]
gi|424671981|ref|ZP_18108964.1| putative rRNA methylase [Enterococcus faecalis 599]
gi|430361920|ref|ZP_19426936.1| rRNA methylase [Enterococcus faecalis OG1X]
gi|430370255|ref|ZP_19428951.1| rRNA methylase [Enterococcus faecalis M7]
gi|229306129|gb|EEN72125.1| rRNA methylase [Enterococcus faecalis ATCC 29200]
gi|255962270|gb|EET94746.1| SAM-dependent methyltransferase [Enterococcus faecalis T1]
gi|255966743|gb|EET97365.1| SAM-dependent methyltransferase [Enterococcus faecalis T2]
gi|256597206|gb|EEU16382.1| SAM-dependent methyltransferase [Enterococcus faecalis ATCC 4200]
gi|256682808|gb|EEU22503.1| SAM-dependent methyltransferase [Enterococcus faecalis T3]
gi|256947836|gb|EEU64468.1| SAM-dependent methyltransferase [Enterococcus faecalis DS5]
gi|256954869|gb|EEU71501.1| SAM-dependent methyltransferase [Enterococcus faecalis HIP11704]
gi|256985694|gb|EEU72996.1| SAM-dependent methyltransferase [Enterococcus faecalis JH1]
gi|256989082|gb|EEU76384.1| SAM-dependent methyltransferase [Enterococcus faecalis E1Sol]
gi|256991743|gb|EEU79045.1| SAM-dependent methyltransferase [Enterococcus faecalis Fly1]
gi|256994179|gb|EEU81481.1| SAM-dependent methyltransferase [Enterococcus faecalis D6]
gi|256998033|gb|EEU84553.1| SAM-dependent methyltransferase [Enterococcus faecalis CH188]
gi|257162870|gb|EEU92830.1| SAM-dependent methyltransferase [Enterococcus faecalis X98]
gi|294453095|gb|EFG21511.1| conserved hypothetical protein [Enterococcus faecalis PC1.1]
gi|306499527|gb|EFM68898.1| rRNA methylase family protein [Enterococcus faecalis TX0109]
gi|306503249|gb|EFM72502.1| rRNA methylase family protein [Enterococcus faecalis TX0860]
gi|306511934|gb|EFM80929.1| rRNA methylase family protein [Enterococcus faecalis TX0855]
gi|306513515|gb|EFM82130.1| rRNA methylase family protein [Enterococcus faecalis TX4248]
gi|310630187|gb|EFQ13470.1| rRNA methylase family protein [Enterococcus faecalis TX0102]
gi|310631690|gb|EFQ14973.1| rRNA methylase family protein [Enterococcus faecalis TX0635]
gi|311291278|gb|EFQ69834.1| rRNA methylase family protein [Enterococcus faecalis TX0470]
gi|315027553|gb|EFT39485.1| rRNA methylase family protein [Enterococcus faecalis TX2137]
gi|315031264|gb|EFT43196.1| rRNA methylase family protein [Enterococcus faecalis TX0017]
gi|315035316|gb|EFT47248.1| rRNA methylase family protein [Enterococcus faecalis TX0027]
gi|315153165|gb|EFT97181.1| rRNA methylase family protein [Enterococcus faecalis TX0031]
gi|315154866|gb|EFT98882.1| rRNA methylase family protein [Enterococcus faecalis TX0043]
gi|315164614|gb|EFU08631.1| rRNA methylase family protein [Enterococcus faecalis TX1302]
gi|315578129|gb|EFU90320.1| rRNA methylase family protein [Enterococcus faecalis TX0630]
gi|327534381|gb|AEA93215.1| rRNA methylase [Enterococcus faecalis OG1RF]
gi|329577652|gb|EGG59082.1| putative rRNA methylase [Enterococcus faecalis TX1467]
gi|397335823|gb|AFO43495.1| rRNA methylase family protein [Enterococcus faecalis D32]
gi|402357537|gb|EJU92243.1| putative rRNA methylase [Enterococcus faecalis 599]
gi|429512216|gb|ELA01825.1| rRNA methylase [Enterococcus faecalis OG1X]
gi|429515536|gb|ELA05049.1| rRNA methylase [Enterococcus faecalis M7]
Length = 187
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 102/186 (54%), Gaps = 18/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS---- 139
++ + K VV GD V+DAT GNG+DT + ++V +G V+ DIQ EAL +T
Sbjct: 9 SHQLLKEVVEPGDFVIDATMGNGHDTAFLAELVG---PSGEVFAFDIQKEALINTEQKLT 65
Query: 140 --SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET 197
+LL +TT LF + H + ++ + T + FNLGYLP +K +IT T
Sbjct: 66 ELNLLPQTT---------LFPLGHEHLHAVLDEETEITAAIFNLGYLPKSNKEIITKPAT 116
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
TK AL+ L+ G I +VVY GH GG EEL+ V + ++L D + +++ +N+
Sbjct: 117 TKQALDGLLPHLVKGSRIILVVYYGHEGGSEELDLVTNYTQALPQDVYSVLRYEFINQKN 176
Query: 258 APVLVF 263
P ++F
Sbjct: 177 QPPVLF 182
>gi|257415363|ref|ZP_05592357.1| SAM-dependent methyltransferase [Enterococcus faecalis ARO1/DG]
gi|422700688|ref|ZP_16758531.1| rRNA methylase family protein [Enterococcus faecalis TX1342]
gi|257157191|gb|EEU87151.1| SAM-dependent methyltransferase [Enterococcus faecalis ARO1/DG]
gi|315170873|gb|EFU14890.1| rRNA methylase family protein [Enterococcus faecalis TX1342]
Length = 187
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 102/186 (54%), Gaps = 18/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS---- 139
++ + K VV GD V+DAT GNG+DT + ++V +G V+ DIQ EAL +T
Sbjct: 9 SHQLLKEVVEPGDFVIDATMGNGHDTAFLAELVG---PSGEVFAFDIQKEALINTEQKLT 65
Query: 140 --SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET 197
+LL +TT LF + H + ++ + T + FNLGYLP +K +IT T
Sbjct: 66 ELNLLPQTT---------LFPLGHEHLHAVLDEETEITAAIFNLGYLPKSNKKIITKPAT 116
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
TK AL+ L+ G I +VVY GH GG EEL+ V + ++L D + +++ +N+
Sbjct: 117 TKQALDGLLPHLVKGSRIILVVYYGHEGGSEELDLVTNYTQALPQDVYSVLRYEFINQKN 176
Query: 258 APVLVF 263
P ++F
Sbjct: 177 QPPVLF 182
>gi|344943968|ref|ZP_08783254.1| rRNA methylase [Methylobacter tundripaludum SV96]
gi|344259626|gb|EGW19899.1| rRNA methylase [Methylobacter tundripaludum SV96]
Length = 191
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 105/187 (56%), Gaps = 9/187 (4%)
Query: 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142
AA+ + + ++R GD +DAT GNG+DT+ + + V +G VYG DIQ A+ ST L
Sbjct: 9 AAHDLIRDILRPGDIAIDATVGNGHDTVFLAEQVG---PSGHVYGFDIQQAAIDST---L 62
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVP--KSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
+K + L + H+ M+E +P VR++ FNLGYLPGGDK+VIT +++T
Sbjct: 63 EKFRQAPSPEYLTLIHASHADMDEKIPAYHHGKVRVIMFNLGYLPGGDKTVITLTDSTLT 122
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDW-ICCKFQMLNRPLAP 259
AL A RIL G+I+++ Y GH GG E V+ + L + + + + ++ AP
Sbjct: 123 ALTVAARILAVEGIITLLAYPGHQGGDLETGQVKNWCEQLDTEQFEVSTIYSTEHKDSAP 182
Query: 260 VLVFLFK 266
L + K
Sbjct: 183 RLFVIRK 189
>gi|424825395|ref|ZP_18250382.1| hypothetical protein CAB1_0763 [Chlamydophila abortus LLG]
gi|333410494|gb|EGK69481.1| hypothetical protein CAB1_0763 [Chlamydophila abortus LLG]
Length = 198
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 10/192 (5%)
Query: 75 LSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA 134
L G ++ ++ +++HV+ GDTVVDATCGNG D L++ +++ G + D+Q EA
Sbjct: 9 LQGNVVRLSHE-IFQHVLTPGDTVVDATCGNGKDCLILARIL---QGKGKLVAYDVQREA 64
Query: 135 LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITT 194
L L + S EK +++ M H + E +L +NLGYLP GDKSV T
Sbjct: 65 LMRAFLLCSTSLSNEEKSIIEFKEMSHEHISE-----PGAKLFHYNLGYLPQGDKSVTTL 119
Query: 195 SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN 254
+TT ++++ A ++ P G++++V Y GH G E+ +VE A +L W F ++N
Sbjct: 120 EKTTMISIQKALTLVAPQGVVTVVCYPGHAEGANEMCSVEGLACTLDPKLWEVGSFYIMN 179
Query: 255 RPLAPVLVFLFK 266
R AP L F+F+
Sbjct: 180 RYKAPRL-FVFR 190
>gi|222056740|ref|YP_002539102.1| rRNA methylase [Geobacter daltonii FRC-32]
gi|221566029|gb|ACM22001.1| putative rRNA methylase [Geobacter daltonii FRC-32]
Length = 228
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 102/175 (58%), Gaps = 8/175 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V+ GD VVDATCGNG+DTL + +V E G V+ D+Q +AL+ T LL++
Sbjct: 60 VKPGDRVVDATCGNGHDTLFLAGLVEAE---GAVFAFDVQEQALEKTRLLLEENKCLDR- 115
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V+LF+ H + VP V+ VAFNLGYLPG DKS IT + TT ALE A +++
Sbjct: 116 --VQLFHAGHQELAAYVPDP--VQAVAFNLGYLPGSDKSCITRAATTLAALEQASYLVVS 171
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
GG+I +V+Y GH GG EE AVE +ARSL C Q+ AP +V K
Sbjct: 172 GGVIVVVIYPGHDGGGEEAAAVEYWARSLPRSFSAWCSRQVNRSSAAPYVVLAAK 226
>gi|299535356|ref|ZP_07048678.1| SAM-dependent methyltransferase [Lysinibacillus fusiformis ZC1]
gi|424737641|ref|ZP_18166092.1| SAM-dependent methyltransferase [Lysinibacillus fusiformis ZB2]
gi|298729117|gb|EFI69670.1| SAM-dependent methyltransferase [Lysinibacillus fusiformis ZC1]
gi|422948496|gb|EKU42875.1| SAM-dependent methyltransferase [Lysinibacillus fusiformis ZB2]
Length = 191
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 99/185 (53%), Gaps = 10/185 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS-SLL 142
A + K + +GDTVVDAT GNG+DTL + ++V DE G VY D+Q EA+ +T LL
Sbjct: 10 AQQLLKDNIEEGDTVVDATAGNGHDTLFLAQLVGDE---GQVYAFDVQKEAVDATLLRLL 66
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL 202
D + LV N H + + V K + FNLGYLPG + +IT TT A+
Sbjct: 67 DHGLE--HRALV--LNKGHEEVTQFVHKPVTAAI--FNLGYLPGSNHDIITRPNTTIQAI 120
Query: 203 EAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
E ++L GGLI +V+Y GHPGG+EE + + + L K+ LN+ P V
Sbjct: 121 ENILKLLKVGGLIVLVIYHGHPGGKEERDKIIDYVSQLPQKYVHVLKYAFLNQQNDPPFV 180
Query: 263 FLFKR 267
++
Sbjct: 181 IALEK 185
>gi|339009478|ref|ZP_08642050.1| hypothetical protein BRLA_c32970 [Brevibacillus laterosporus LMG
15441]
gi|421872696|ref|ZP_16304313.1| rRNA methylase family protein [Brevibacillus laterosporus GI-9]
gi|338773956|gb|EGP33487.1| hypothetical protein BRLA_c32970 [Brevibacillus laterosporus LMG
15441]
gi|372458111|emb|CCF13862.1| rRNA methylase family protein [Brevibacillus laterosporus GI-9]
Length = 184
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 105/177 (59%), Gaps = 10/177 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V +G+TVVDAT GNG DTL + ++V + G VY D+QSEA++ T + L++ E+
Sbjct: 17 VEEGETVVDATMGNGNDTLFLAQLVGER---GKVYAYDVQSEAIEKTRARLEREQV-VER 72
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V L H +M+EI A+ V FNLGYLPGG+K + T + TT A+EA L
Sbjct: 73 --VNLLLTSHEQMKEI---PVAIGAVMFNLGYLPGGNKDITTQANTTIRAIEAGLDKLRT 127
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFLFKR 267
GG++++++Y GH G E EAV + L +++ ++Q +N+ AP ++ + KR
Sbjct: 128 GGIMTIIIYWGHEAGAVEKEAVVDYCEKLPQTEYLVLRYQYMNQQNQAPFIIAIEKR 184
>gi|29840531|ref|NP_829637.1| hypothetical protein CCA00774 [Chlamydophila caviae GPIC]
gi|29834880|gb|AAP05515.1| conserved hypothetical protein [Chlamydophila caviae GPIC]
Length = 198
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 106/190 (55%), Gaps = 10/190 (5%)
Query: 75 LSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA 134
L G ++ ++ +++ V+ GDTVVDATCGNG D L++ +++ G + D+Q EA
Sbjct: 9 LQGNVVQLSHE-IFQKVLTPGDTVVDATCGNGKDCLILARLL---KGKGKLIAYDVQKEA 64
Query: 135 LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITT 194
L T+ L K+ S E+ +++ M H + E +L +NLGYLP GDK + T
Sbjct: 65 LNRTALLCSKSLSPEERSVIEFKEMSHEHINE-----AGAKLFHYNLGYLPNGDKRITTL 119
Query: 195 SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN 254
TT ++++ A ++ P G+I++V Y GH G E+ ++E A L W F ++N
Sbjct: 120 ETTTMLSIQKALDLVAPQGVITVVCYPGHEEGSHEMVSIEKLAIGLDSRLWEVGSFYIMN 179
Query: 255 RPLAP-VLVF 263
R AP +L+F
Sbjct: 180 RNKAPRLLIF 189
>gi|422809744|ref|ZP_16858155.1| SAM-dependent methyltransferase, MraW methylase family [Listeria
monocytogenes FSL J1-208]
gi|378753358|gb|EHY63943.1| SAM-dependent methyltransferase, MraW methylase family [Listeria
monocytogenes FSL J1-208]
Length = 191
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 109/187 (58%), Gaps = 13/187 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD V+DATCGNG+DTL++ ++V G V G DIQ A+ +T + L+
Sbjct: 10 AHDTLRKVVRPGDYVIDATCGNGHDTLLLAELVGIN---GHVLGFDIQQVAVDATKARLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMA 201
++ V+L H+R +P T+ VR FNLGYLPGG+K + TT+++T +
Sbjct: 67 NAGISSQ---VELICASHAR----IPAYTSRPVRAAIFNLGYLPGGNKEITTTADSTLES 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPV 260
+ +L GG+I +V+Y GH G+ E +AV AF ++ D+ +Q +N + AP
Sbjct: 120 IGHLMELLEVGGVIILVIYHGHAAGKLEKDAVMAFCETIPQQDFHVLSYQFINQKNDAPF 179
Query: 261 LVFLFKR 267
++ + KR
Sbjct: 180 VIVIEKR 186
>gi|293553710|ref|ZP_06674333.1| methyltransferase [Enterococcus faecium E1039]
gi|291602136|gb|EFF32365.1| methyltransferase [Enterococcus faecium E1039]
Length = 173
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 99/171 (57%), Gaps = 6/171 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD VVDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 9 SHTLLQEILQPGDHVVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATRERLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + V LF H + E++ + ++ FNLGYLP DK++IT ETT+ A+E
Sbjct: 66 QRQLEER---VSLFLQGHETLGEVIAEQQNLKAGIFNLGYLPKSDKAIITMPETTRTAME 122
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN 254
+ L+P G + +VVY GH GG +EL+ V++F L + + ++ +N
Sbjct: 123 EILKRLVPRGRLILVVYYGHEGGEKELDMVDSFCSKLPQETYNVLNYRFIN 173
>gi|427394136|ref|ZP_18887638.1| hypothetical protein HMPREF9698_01273 [Alloiococcus otitis ATCC
51267]
gi|425730177|gb|EKU93019.1| hypothetical protein HMPREF9698_01273 [Alloiococcus otitis ATCC
51267]
Length = 187
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 94/168 (55%), Gaps = 7/168 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V KGD V+DAT GNG D L + +V E G + G DIQ +AL T L+ + A+
Sbjct: 17 VEKGDLVIDATLGNGKDALFLSNLVGKE---GKLIGFDIQVQALAKTQERLEAESCPAK- 72
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
LF H M +A + + FNLGYLPG DK++ T ++TT A+EA IL P
Sbjct: 73 --TTLFLAGHENMASYCHNDSA-KAIVFNLGYLPGSDKTLTTQAQTTIKAVEAGLDILQP 129
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
GGL++++VY GH G+ E E +E + + L ++ K+Q LN+ P
Sbjct: 130 GGLMTLMVYAGHSEGQVEKEELEVYLQGLDQSNYTVFKYQPLNQKNTP 177
>gi|328956888|ref|YP_004374274.1| putative RNA methylase [Carnobacterium sp. 17-4]
gi|328673212|gb|AEB29258.1| putative RNA methylase [Carnobacterium sp. 17-4]
Length = 187
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 12/176 (6%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL- 153
GD+V+DAT GNG DT+++ +V G VYG D+Q +A++ T L T GL
Sbjct: 20 GDSVIDATVGNGNDTVLLATLVG---KNGMVYGFDLQEKAIEKTKEKLLLT------GLF 70
Query: 154 --VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V LFN H + ++P+ T + FNLGYLP GDK++ITT TT +A++ L
Sbjct: 71 NQVMLFNQGHETIGSVLPQDTLIAGAIFNLGYLPNGDKTIITTGNTTLIAVKEILSRLRK 130
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GGL+ +VVY GH GG+EE +AV + ++LS D+ ++ LN+ P L+ ++
Sbjct: 131 GGLLLLVVYHGHNGGKEEKDAVLTYVQTLSQTDYTVLRYDFLNQKNNPPLLIAIEK 186
>gi|291522365|emb|CBK80658.1| Putative rRNA methylase [Coprococcus catus GD/7]
Length = 195
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 94/176 (53%), Gaps = 8/176 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+R GDTV D T GNG+DT M ++ D G VY DIQ EAL T +LL T +
Sbjct: 21 IRPGDTVCDCTMGNGHDTAYMCRLTGD---TGTVYSFDIQPEALSRTEALL---TEEHLL 74
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+L HS +++ + +R FNLGYLP GD +VIT +T A+EAA I
Sbjct: 75 TPARLILDSHSHLKQYI--DHPIRFFVFNLGYLPDGDPTVITKGTSTLEAIEAALSITET 132
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG +++ Y GHPGG EE AVE F +L + K NR P +++L K+
Sbjct: 133 GGGGAVLSYYGHPGGAEEKAAVEEFLHNLPPKYFSVMKIDSFNRKNTPPVLYLIKK 188
>gi|297616627|ref|YP_003701786.1| rRNA methylase [Syntrophothermus lipocalidus DSM 12680]
gi|297144464|gb|ADI01221.1| putative rRNA methylase [Syntrophothermus lipocalidus DSM 12680]
Length = 193
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 100/179 (55%), Gaps = 13/179 (7%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
VV GD VVDATCGNG DT+ + ++V ++ G V +D+Q A++ T SLL K +
Sbjct: 20 VVEPGDFVVDATCGNGKDTVFLARLVGEK---GKVLAIDVQPLAVERTKSLLQKEGLGSR 76
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V L HS + + V+ FNLGYLPGGDK V+T ETT A+ ++
Sbjct: 77 ---VTLVRDDHSLIRHYL--REPVKAAMFNLGYLPGGDKRVVTRPETTIAAMREILSAVV 131
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWIC---CKFQMLNRPLAPVLVFLFK 266
PGGL+++V Y GHPGG EELEA+ + R L ++ C ++ P P L+ + K
Sbjct: 132 PGGLVTVVAYTGHPGGIEELEALLRYVRGLPQHEFSVMQSCYINQVHHP--PQLIAVGK 188
>gi|335429812|ref|ZP_08556710.1| rRNA methylase [Haloplasma contractile SSD-17B]
gi|334889822|gb|EGM28107.1| rRNA methylase [Haloplasma contractile SSD-17B]
Length = 193
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 10/176 (5%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGD +DAT GNG+D+L + K+V + +G VYG DIQ +A++ T +LLD+ K E+
Sbjct: 20 KGDIAIDATIGNGHDSLFLSKLVGE---SGHVYGYDIQKQAIEKTRNLLDQ--HKIEQ-- 72
Query: 154 VKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V LF+ H + + VP S V FNLGYLPG DK+V T TT A+ +IL
Sbjct: 73 VTLFHKGHEYILDTVPSSLYGNVSSAIFNLGYLPGSDKTVTTKGSTTIKAINQLLQILKV 132
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFLFK 266
GG+I +VVY GHP G+ E + + + +L+ ++Q +N+ AP ++ + K
Sbjct: 133 GGIIVLVVYHGHPEGQVEKDELLDYVSTLNQKYAHVLRYQFVNQKNHAPFIIAIEK 188
>gi|410455683|ref|ZP_11309558.1| rRNA methylase [Bacillus bataviensis LMG 21833]
gi|409928893|gb|EKN65987.1| rRNA methylase [Bacillus bataviensis LMG 21833]
Length = 190
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 102/186 (54%), Gaps = 8/186 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + VV+ GD VVDAT GNG+DT+ + +V + G VYG D+Q EA+ +TS D
Sbjct: 10 AKNLLDRVVKPGDVVVDATVGNGHDTIFLASLVGE---TGKVYGFDVQEEAISATS---D 63
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKST--AVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ T V LF+ H ++ + +P ++ FNLGYLPG DK+++T +ETT A
Sbjct: 64 RLTEHNLSEWVTLFHAGHEQLSDKIPADDHGKIKGAIFNLGYLPGSDKTIVTRAETTIAA 123
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
+E +++ P G+I +V+Y GH G E + + + + L ++Q +N+ P
Sbjct: 124 IEQLLKMMAPEGIIVLVIYHGHEQGAVERDFLLPYCQQLDQKTAHVLQYQFINQQNNPPF 183
Query: 262 VFLFKR 267
+ ++
Sbjct: 184 IVAIEK 189
>gi|239828101|ref|YP_002950725.1| rRNA methylase [Geobacillus sp. WCH70]
gi|239808394|gb|ACS25459.1| putative rRNA methylase [Geobacillus sp. WCH70]
Length = 191
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 16/203 (7%)
Query: 67 LPLCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVY 126
+ L K P + TL+ +A N +GD VVDAT GNG+DTL + + V + +G V+
Sbjct: 1 MKLAKILPFTRTLMDLAVN--------EGDIVVDATVGNGHDTLYLAQRVGE---SGHVF 49
Query: 127 GLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYL 184
G DIQ EA+ TS+ L + V LF H ++ E +P R+ FNLGYL
Sbjct: 50 GFDIQKEAIAKTSARLQEHNMLNR---VTLFQASHDQLIEKIPSIYHGRITGAMFNLGYL 106
Query: 185 PGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDD 244
PGGDK ++T ++T A+E +I+ G+I +VVY GHP G E + + + +++
Sbjct: 107 PGGDKRIVTKPDSTIRAIEQLMQIMAKEGIIVLVVYHGHPEGIIERDELLNYVKTIDQKR 166
Query: 245 WICCKFQMLNRPLAPVLVFLFKR 267
K++ +N+ P + ++
Sbjct: 167 AHVLKYEFINQINNPPFIIAIEK 189
>gi|164688312|ref|ZP_02212340.1| hypothetical protein CLOBAR_01957 [Clostridium bartlettii DSM
16795]
gi|164602725|gb|EDQ96190.1| putative rRNA methylase [Clostridium bartlettii DSM 16795]
Length = 190
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 104/182 (57%), Gaps = 14/182 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
++++++GD VVDAT GNGYDT+ + K V + G VY D+Q EALKST+ K +K
Sbjct: 19 ENIIQEGDVVVDATMGNGYDTVYLAKKVGEN---GKVYAFDVQEEALKSTT----KKVNK 71
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
E V+L H M++ V + V + FNLGYLP +IT ++TT A++ +
Sbjct: 72 EELNNVELILDGHQNMDKYVKEE--VSCIVFNLGYLPRAKHQIITKADTTLEAIKKGLEL 129
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVD--DWICCKF-QMLNRPLAPVLVFLF 265
L P G++S+ +Y GH GG EE V + +L + + +C KF +N P P L+ +
Sbjct: 130 LKPNGVMSIAIYSGHEGGMEEKNEVYKYTETLDQNYFNVLCTKFINQINNP--PELLLIE 187
Query: 266 KR 267
K+
Sbjct: 188 KK 189
>gi|242281044|ref|YP_002993173.1| rRNA methylase [Desulfovibrio salexigens DSM 2638]
gi|242123938|gb|ACS81634.1| putative rRNA methylase [Desulfovibrio salexigens DSM 2638]
Length = 190
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 105/186 (56%), Gaps = 9/186 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A V V+ G VDAT GNGYDT+ + + + G V+G DIQ +A+ T L+
Sbjct: 10 AKSVLCEVLHPGCIGVDATVGNGYDTVFLSEKAGPD---GHVFGFDIQEDAVNQTEQRLN 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETTKMA 201
+ A +F+ H M E++P R+ V FNLG+LPG DK+VIT S+TT A
Sbjct: 67 EECLPANW---TIFHSGHENMLELIPSEFHGRVNAVMFNLGFLPGSDKTVITKSKTTLAA 123
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV- 260
+EA+ +L GG++ + +Y GHPGG +E AV + +L + + +M+N+P P+
Sbjct: 124 IEASLDLLAKGGMLCIAIYAGHPGGDDEDVAVREYCNALDYHTYRVIQSEMINKPGHPIR 183
Query: 261 LVFLFK 266
++F+ K
Sbjct: 184 MLFVTK 189
>gi|308068128|ref|YP_003869733.1| SAM-dependent methyltransferase [Paenibacillus polymyxa E681]
gi|305857407|gb|ADM69195.1| SAM-dependent methyltransferase [Paenibacillus polymyxa E681]
Length = 193
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 101/182 (55%), Gaps = 12/182 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK--A 149
V+ GDT +DAT G G DTL + K G VYG DIQ EAL L++ S A
Sbjct: 18 VQPGDTAIDATVGTGADTLFLAKAAGKR---GRVYGFDIQQEALHCARRRLEENASPSLA 74
Query: 150 EKGLVKLFNMCHSRMEEIVPK--STAVRLVAFNLGYLP--GGDKSVITTSETTKMALEAA 205
E V L H +M E VP V V FNLGYLP G D +VIT +++T +AL+AA
Sbjct: 75 E---VSLQLQSHEQMREAVPDMLHGKVAAVMFNLGYLPSEGADPTVITHTDSTLVALDAA 131
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
++L P G+++ V+Y GH GG EE EAV +A +L V ++ L R +P +V +
Sbjct: 132 LQLLRPRGILTAVLYPGHAGGSEEAEAVLQWASALPVSSGQSIIYRQLQRAASPYVVAVE 191
Query: 266 KR 267
K+
Sbjct: 192 KK 193
>gi|212638269|ref|YP_002314789.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1]
gi|212559749|gb|ACJ32804.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1]
Length = 191
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 112/204 (54%), Gaps = 17/204 (8%)
Query: 67 LPLCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVY 126
+ L + P + +LI +A V++GD VVDAT GNG+DTL + + V +G V+
Sbjct: 2 MKLMRILPFARSLIDLA--------VKEGDIVVDATIGNGHDTLYLAERVG---QSGHVF 50
Query: 127 GLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYL 184
G DIQ++A+++T+ L + + V L H+ ++ +P R+ FNLGYL
Sbjct: 51 GFDIQAQAIENTTKRLHEHHMETR---VTLVQASHAEIDAHIPPEYKGRITGAMFNLGYL 107
Query: 185 PGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDD 244
PGGDK ++T +T A+E I+ P G+I +V+Y GHP G E +A+ + R++
Sbjct: 108 PGGDKQIVTKPNSTIAAIEQLLDIMAPEGIIVLVIYHGHPEGAIERDALLQYVRTIDQQR 167
Query: 245 WICCKFQMLNR-PLAPVLVFLFKR 267
+++ +N+ P +V + KR
Sbjct: 168 AHVVRYEFINQINQPPFIVAIEKR 191
>gi|89898047|ref|YP_515157.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
gi|89331419|dbj|BAE81012.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
Length = 197
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 104/190 (54%), Gaps = 9/190 (4%)
Query: 75 LSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA 134
L G ++ ++ + +++ ++ GDTVVDATCGNG D L++ +++ G + D+Q A
Sbjct: 8 LQGNVVRLS-HEIFQEILTPGDTVVDATCGNGKDCLVLARLL---QGRGKLVAYDVQRRA 63
Query: 135 LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITT 194
L + L SK E+ +++ M H + E +L +NLGYLP GDKS+ T
Sbjct: 64 LDQAALLCSTFLSKEEREIIEFKEMSHEYINE-----AGAKLFHYNLGYLPCGDKSITTL 118
Query: 195 SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN 254
TT ++++ A ++ P G++++V Y GH G E +AVE AR L W F ++N
Sbjct: 119 ERTTLISIQKALDLVAPQGVVTVVCYPGHEEGVNETQAVERLARELDSRLWEVGSFYIMN 178
Query: 255 RPLAPVLVFL 264
R AP L+
Sbjct: 179 RNRAPRLLIF 188
>gi|386715143|ref|YP_006181466.1| rRNA methylase YtqB [Halobacillus halophilus DSM 2266]
gi|384074699|emb|CCG46192.1| probable rRNA methylase YtqB [Halobacillus halophilus DSM 2266]
Length = 190
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 104/186 (55%), Gaps = 8/186 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + ++V+ GD +DATCGNG+DTL + +V ++ G VY DIQ +A+ T L
Sbjct: 10 AHSLMENVINDGDIAIDATCGNGHDTLFLTGLVGEK---GYVYSFDIQEQAIIKTRERLK 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPK--STAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
K ++ V L H+++ + + + + ++ FNLGYLPG DK+V+TT + T +
Sbjct: 67 KHQAEER---VTLVQDSHAQLAKYISQVHQSQIKGAIFNLGYLPGSDKTVVTTPKETLSS 123
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
+E L GG+I +V+Y GH GG++E +A+ + SL + ++ +N+ P
Sbjct: 124 IEQLLSFLQQGGIIVLVIYHGHAGGKQEKDALMEYVASLDQKSFKVLQYSFINQRNTPPF 183
Query: 262 VFLFKR 267
+ ++
Sbjct: 184 IIAIEK 189
>gi|329922238|ref|ZP_08277940.1| putative rRNA methylase [Paenibacillus sp. HGF5]
gi|328942275|gb|EGG38545.1| putative rRNA methylase [Paenibacillus sp. HGF5]
Length = 196
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 102/182 (56%), Gaps = 12/182 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK--TTSKA 149
+R GD +DAT G G DTL + K S G VY DIQ +AL+ T LDK T + A
Sbjct: 18 LRPGDIALDATAGTGADTLYLAKCTG---SKGKVYAFDIQEQALQLTRERLDKEPTGTLA 74
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPG--GDKSVITTSETTKMALEAA 205
E V L HS M E VP+ R+ + FNLGYLP DK ++T + +T ALEAA
Sbjct: 75 E---VSLLLQSHSLMRECVPEIEHGRMGAIMFNLGYLPADSSDKRIMTETASTLTALEAA 131
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
+L PGG+I++V+Y GH GG E +AV+A+A L ++ L R AP L+ L
Sbjct: 132 IELLRPGGIITIVLYPGHKGGDAEADAVQAWAGELPQHKVQTILYRGLQRSEAPYLIALE 191
Query: 266 KR 267
++
Sbjct: 192 RK 193
>gi|260583635|ref|ZP_05851383.1| SAM-dependent methyltransferase [Granulicatella elegans ATCC
700633]
gi|260158261|gb|EEW93329.1| SAM-dependent methyltransferase [Granulicatella elegans ATCC
700633]
Length = 186
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 97/184 (52%), Gaps = 8/184 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + ++ GD V+DAT GNG DT+ + K+V E G V+ DIQ AL T+ +
Sbjct: 9 SHSILQECIKPGDCVIDATMGNGNDTIFLSKLVQSE---GKVFAFDIQEAALIRTNEKIQ 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ +K L+ C S ++ FNLGYLPG DKS+ITT ++T A+E
Sbjct: 66 ELDTKENIHLI-----CDSHANLSTYVQQPIQAAIFNLGYLPGSDKSIITTPDSTIRAIE 120
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
L GG I +V Y GH GG EL ++ F +L +W ++Q +N+ P + F
Sbjct: 121 TIMEQLTIGGRIVLVCYWGHEGGDTELSQLQKFLPTLDQHEWTVLQYQFINQQNQPPICF 180
Query: 264 LFKR 267
+ +R
Sbjct: 181 VIER 184
>gi|392529421|ref|ZP_10276558.1| putative RNA methylase [Carnobacterium maltaromaticum ATCC 35586]
gi|414083144|ref|YP_006991852.1| rRNA methylase family protein [Carnobacterium maltaromaticum LMA28]
gi|412996728|emb|CCO10537.1| rRNA methylase family protein [Carnobacterium maltaromaticum LMA28]
Length = 187
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 105/184 (57%), Gaps = 11/184 (5%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS--LLDK 144
+ K + GD+V+DAT GNG DT+ + +V G V+G DIQ EA+++T LL
Sbjct: 12 LLKQAITNGDSVIDATVGNGGDTVFLASLVG---PFGKVFGFDIQKEAIETTQQKLLLTG 68
Query: 145 TTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEA 204
T + E LF H ++ ++PK++ + FNLGYLP DKS+IT ++TT +A+E
Sbjct: 69 LTEQVE-----LFQQGHETIDSVLPKNSQIAAAIFNLGYLPTSDKSIITQADTTLLAIEH 123
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVF 263
L GL+ +VVY GH GG E +AV + ++L +++ ++ +N R P L+
Sbjct: 124 ILPRLRKTGLVVIVVYYGHDGGLAEKDAVLNYCQTLPQEEFNVLQYGFINQRNQPPFLLA 183
Query: 264 LFKR 267
+ K+
Sbjct: 184 IEKK 187
>gi|424780789|ref|ZP_18207659.1| SAM-dependent methyltransferase, MraW methylase family
[Catellicoccus marimammalium M35/04/3]
gi|422842714|gb|EKU27163.1| SAM-dependent methyltransferase, MraW methylase family
[Catellicoccus marimammalium M35/04/3]
Length = 190
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 6/166 (3%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
+G VDAT GNG DTL + +++ D+ G V+ DIQ +AL++T +K T
Sbjct: 18 EGGVAVDATMGNGNDTLFLSQLLEDQ---GQVFAFDIQEQALQNTR---EKLTENQAPEN 71
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
L+++ H +MEE++P+ ++ FNLGYLP DK +IT ETT A E L GG
Sbjct: 72 TTLYHLGHEKMEEVLPEDIQIQAAIFNLGYLPKSDKKIITLPETTLKAFEFILNHLAVGG 131
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
+ V+Y GH GG EE AV ++A L + +Q +N+ P
Sbjct: 132 RLVCVLYYGHEGGEEEKNAVLSYAAKLPQQQYQVLTYQFINQIHCP 177
>gi|194017839|ref|ZP_03056448.1| YtqB [Bacillus pumilus ATCC 7061]
gi|194010491|gb|EDW20064.1| YtqB [Bacillus pumilus ATCC 7061]
Length = 193
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 97/177 (54%), Gaps = 10/177 (5%)
Query: 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG 152
+KGD V+DAT GNG+DTL + +V + G V+ D+Q EA++ T L +
Sbjct: 19 QKGDIVIDATMGNGHDTLYLADLVGHD---GQVFAFDVQEEAIQQTRKRLGEGYP----- 70
Query: 153 LVKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V L + H ++ + +P+ + FNLGYLPGGDK+V T + TT A+E L
Sbjct: 71 YVHLIHDGHEKLAQHLPRDVYGHISGAVFNLGYLPGGDKAVTTQAHTTIEAIEQLLDWLK 130
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
PGGLI +V+Y GHP G++E E + + RSL ++ +Q +N P V ++
Sbjct: 131 PGGLIVLVIYHGHPEGKKEKEVLLDYCRSLPHEEVQVLSYQYMNIQNDPPFVVAIEK 187
>gi|325109448|ref|YP_004270516.1| rRNA methylase [Planctomyces brasiliensis DSM 5305]
gi|324969716|gb|ADY60494.1| rRNA methylase [Planctomyces brasiliensis DSM 5305]
Length = 185
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 91/155 (58%), Gaps = 9/155 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + V+ GD V+DAT GNG+DTL++ + V E G V+ DIQ A++ T L
Sbjct: 10 AHAAVQQAVQPGDCVIDATAGNGHDTLILAEAVFPE---GQVHAFDIQPSAIEQTRLRLP 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMA 201
S +V L+ H+ M +P + ++ A FNLGYLPGGDK + T +T A
Sbjct: 67 ANLSS----IVSLYQASHAEMPLHLPPESRGQVAAILFNLGYLPGGDKELTTRESSTLAA 122
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAF 236
L+ A L PGGL+S++ YVGHPGG E EAVE++
Sbjct: 123 LQIAADWLKPGGLLSILAYVGHPGGGAEAEAVESW 157
>gi|375088503|ref|ZP_09734841.1| hypothetical protein HMPREF9703_00923 [Dolosigranulum pigrum ATCC
51524]
gi|374561468|gb|EHR32807.1| hypothetical protein HMPREF9703_00923 [Dolosigranulum pigrum ATCC
51524]
Length = 187
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 100/170 (58%), Gaps = 11/170 (6%)
Query: 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVK 155
D V+DAT GNG+D+L + + + E G +YG DIQ +A+ T++ L + V
Sbjct: 21 DCVIDATIGNGHDSLFLKQHIGRE---GHLYGFDIQEQAITQTTNRLKQADCLHN---VT 74
Query: 156 LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215
L H +M+ + + + + FNLGYLP DKS+ITT +TT ALE + +++ PGG++
Sbjct: 75 LIQAGHEQMQAHISTNETISAIVFNLGYLPSADKSIITTPDTTIAALEQSLQLIKPGGIV 134
Query: 216 SMVVYVGHPGGREELEAVEAFARSLSVDDW--ICCK-FQMLNRPLAPVLV 262
++++Y GH GG+ E E V +F ++L + IC + +N+P P L+
Sbjct: 135 TVMIYYGHDGGQAEKEYVLSFFQALDQQAFSVICYRPLNQINQP--PFLI 182
>gi|417941210|ref|ZP_12584497.1| MraW methylase-like family protein [Streptococcus oralis SK313]
gi|419779847|ref|ZP_14305704.1| MraW methylase-like family protein [Streptococcus oralis SK100]
gi|343388503|gb|EGV01089.1| MraW methylase-like family protein [Streptococcus oralis SK313]
gi|383185864|gb|EIC78353.1| MraW methylase-like family protein [Streptococcus oralis SK100]
Length = 185
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 101/184 (54%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTQERLD 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ K + ++K H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 62 QAGMKNAQLILK----GHETLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 115 KLCHLLVKGGRIAIMIYYGHEGGDTERDAVLDFVSQLNQQEYTAAIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|322375523|ref|ZP_08050036.1| SAM-dependent methyltransferase, MraW methylase family
[Streptococcus sp. C300]
gi|321279786|gb|EFX56826.1| SAM-dependent methyltransferase, MraW methylase family
[Streptococcus sp. C300]
Length = 187
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 101/184 (54%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD
Sbjct: 10 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTQERLD 63
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ K + ++K H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 64 QAGMKNAQLILK----GHETLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEALE 116
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 117 NLCHLLVKGGRIAIMIYYGHEGGDTERDAVLDFVSQLNQQEYTVAIYRTLNQVNNPPFLV 176
Query: 264 LFKR 267
+ ++
Sbjct: 177 MIEK 180
>gi|114320671|ref|YP_742354.1| rRNA methylase [Alkalilimnicola ehrlichii MLHE-1]
gi|114227065|gb|ABI56864.1| putative rRNA methylase [Alkalilimnicola ehrlichii MLHE-1]
Length = 194
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 86/150 (57%), Gaps = 8/150 (5%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
GD VDAT GNG+DT+ + V ++G V+ DIQ AL +T L ++
Sbjct: 21 GDRAVDATAGNGHDTVFLADQV---GASGHVWAFDIQPTALAATRQRL---RARGLASRA 74
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212
L H + E +P L A FNLGYLPGGD++++T ETT+ AL AA R L PG
Sbjct: 75 TLVAAGHETLAEHLPPQVQGGLAAVMFNLGYLPGGDRALVTRPETTRAALSAAWRALAPG 134
Query: 213 GLISMVVYVGHPGGREELEAVEAFARSLSV 242
G+IS+++Y GHPGG +E +A+ + L V
Sbjct: 135 GVISLMIYRGHPGGEQEYQALRDWCSGLGV 164
>gi|417915671|ref|ZP_12559280.1| putative rRNA methylase [Streptococcus mitis bv. 2 str. SK95]
gi|342833510|gb|EGU67791.1| putative rRNA methylase [Streptococcus mitis bv. 2 str. SK95]
Length = 185
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 101/186 (54%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VDAT GNG+DTL + K+ A VY DIQ +AL+ T L+
Sbjct: 8 AHDFLAEVVTKEDIAVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTQDRLN 61
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
E GL V+L H +++ V K+ A FNLGYLP DKSVIT +TT A
Sbjct: 62 ------EAGLENVQLILQGHETLDQFVTKAKAG---IFNLGYLPSADKSVITQPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE ++LI GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 113 LEKLCQLLIKGGRIAIMIYYGHEGGDTERDAVLDFVSQLNQQEYTAAIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|126651273|ref|ZP_01723480.1| SAM-dependent methyltransferase [Bacillus sp. B14905]
gi|126591802|gb|EAZ85885.1| SAM-dependent methyltransferase [Bacillus sp. B14905]
Length = 192
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 99/185 (53%), Gaps = 10/185 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST-SSLL 142
A + K V +GD VVDAT GNG+DTL + ++V DE G VY D+Q EA+ +T LL
Sbjct: 10 AQQLLKDSVEEGDAVVDATAGNGHDTLFLAQLVGDE---GQVYAFDVQKEAVDATLHRLL 66
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL 202
D V + N H + V K A + FNLGYLPGG+ +IT TT A+
Sbjct: 67 DHGLEHR----VLVLNKGHEEVANFVHKKVAAAI--FNLGYLPGGNHDIITKPSTTIQAI 120
Query: 203 EAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
E ++L GGLI +V+Y GHPGG+EE + V F L K++ LN+ P V
Sbjct: 121 EDLLKLLKVGGLIILVIYHGHPGGKEERDTVIDFVSQLPQKYVHVLKYEFLNQQNDPPFV 180
Query: 263 FLFKR 267
++
Sbjct: 181 IALEK 185
>gi|153953679|ref|YP_001394444.1| rRNA methylase [Clostridium kluyveri DSM 555]
gi|219854301|ref|YP_002471423.1| hypothetical protein CKR_0958 [Clostridium kluyveri NBRC 12016]
gi|146346560|gb|EDK33096.1| Predicted rRNA methylase [Clostridium kluyveri DSM 555]
gi|219568025|dbj|BAH06009.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 189
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 102/177 (57%), Gaps = 9/177 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++GD VDAT GNG DT+ + ++V +G VY DIQ +A+K+T K K
Sbjct: 21 LKEGDIAVDATMGNGNDTVFLAEIVG---QSGKVYAFDIQQDAIKNTQK---KIAYKNLF 74
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
VKL N H M+ + S V+LV FNLGYLP G+ S+ T ++TT +AL+ A ++
Sbjct: 75 KYVKLINDGHENMDNYI--SEKVKLVIFNLGYLPKGEHSITTRADTTLIALKKALNLIDK 132
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA-PVLVFLFKR 267
G++ +VVY GH G+ E ++E + ++L + K +N+ + P+L+ + KR
Sbjct: 133 NGVVILVVYYGHEQGKFEKMSLERYVKTLHQKKYNVVKINFINQINSPPMLIIIEKR 189
>gi|417934964|ref|ZP_12578284.1| MraW methylase-like family protein [Streptococcus mitis bv. 2 str.
F0392]
gi|340771534|gb|EGR94049.1| MraW methylase-like family protein [Streptococcus mitis bv. 2 str.
F0392]
Length = 185
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 100/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L+
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTKDRLN 61
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
E GL V+L H +++ V T R FNLGYLP DKSVIT +TT A
Sbjct: 62 ------EAGLENVQLILQGHETLDQFV---TEARAGIFNLGYLPSADKSVITRPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 113 LEKLCHLLVKGGRIAIMIYYGHEGGDSERDAVLDFVSQLNQQEYTATIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|398307991|ref|ZP_10511465.1| hypothetical protein BmojR_00385 [Bacillus mojavensis RO-H-1]
Length = 194
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 99/196 (50%), Gaps = 17/196 (8%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S L+ +AA GD VVDAT GNG+DTL + ++V + G VY DIQ
Sbjct: 8 PYSKELLKMAAG--------DGDIVVDATMGNGHDTLFLAELVGEN---GHVYAFDIQES 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
A+ +T L T + LF+ H ++ E +P+ T ++ A FNLGYLPGGDKS+
Sbjct: 57 AVANTKERLGDTY----QNRTTLFHKSHDKIAESLPQETHGKVAAAVFNLGYLPGGDKSI 112
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
T +T A+E I+ GLI +VVY GHP G+ E V F R L +
Sbjct: 113 TTNGNSTIQAIEQLLSIMKDEGLIVLVVYHGHPEGKTEKNDVLDFCRDLDQQAARVLTYG 172
Query: 252 MLNRPLAPVLVFLFKR 267
+N+ P + ++
Sbjct: 173 FINQQNDPPFIIAIEK 188
>gi|406577864|ref|ZP_11053446.1| hypothetical protein GMD6S_07294 [Streptococcus sp. GMD6S]
gi|404459268|gb|EKA05635.1| hypothetical protein GMD6S_07294 [Streptococcus sp. GMD6S]
Length = 185
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 101/186 (54%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTQERLD 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+T G+ +L H +++ V ++ A FNLGYLP DKSVIT +TT A
Sbjct: 62 QT------GMTNAQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 113 LEKLCHLLVKGGRIAIMIYYGHEGGDTERDAVLDFVSQLNQQEYTAAIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|392948459|ref|ZP_10314068.1| methyltransferase, SAM-dependent [Lactobacillus pentosus KCA1]
gi|392436214|gb|EIW14129.1| methyltransferase, SAM-dependent [Lactobacillus pentosus KCA1]
Length = 175
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 101/178 (56%), Gaps = 7/178 (3%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
VV GD V+DAT GNG+DT+ + K+V + G V G DIQ A+ +T+ L +
Sbjct: 4 VVNPGDHVIDATVGNGHDTVYLAKLVG---TTGHVDGFDIQPAAIAATTKALTAAGFNHQ 60
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
L+ H + + + ++ FNLGYLPGGDKS+IT TT A++A ++ L+
Sbjct: 61 ---ATLWQTGHEHIADKIAADEPIKCAVFNLGYLPGGDKSIITKPTTTLTAIKAIQQRLV 117
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFKR 267
GLI ++VY GHPGG E +AV +A SL + ++Q +N+ + P L+ + KR
Sbjct: 118 TNGLIILLVYAGHPGGAAEAKAVLDYATSLDQHQFQVLQYQFVNQVHVPPYLLAIQKR 175
>gi|438690769|emb|CCP50026.1| hypothetical protein A7249_00893 [Chlamydia trachomatis A/7249]
gi|438691854|emb|CCP49128.1| hypothetical protein A5291_00894 [Chlamydia trachomatis A/5291]
gi|438693227|emb|CCP48229.1| hypothetical protein A363_00895 [Chlamydia trachomatis A/363]
gi|440525759|emb|CCP51010.1| hypothetical protein SOTONK1_00886 [Chlamydia trachomatis
K/SotonK1]
gi|440527544|emb|CCP53028.1| hypothetical protein SOTOND1_00889 [Chlamydia trachomatis
D/SotonD1]
gi|440528435|emb|CCP53919.1| hypothetical protein SOTOND5_00886 [Chlamydia trachomatis
D/SotonD5]
gi|440529326|emb|CCP54810.1| hypothetical protein SOTOND6_00886 [Chlamydia trachomatis
D/SotonD6]
gi|440530218|emb|CCP55702.1| hypothetical protein SOTONE4_00887 [Chlamydia trachomatis
E/SotonE4]
gi|440531115|emb|CCP56599.1| hypothetical protein SOTONE8_00891 [Chlamydia trachomatis
E/SotonE8]
gi|440532008|emb|CCP57518.1| hypothetical protein SOTONF3_00887 [Chlamydia trachomatis
F/SotonF3]
gi|440532900|emb|CCP58410.1| hypothetical protein SOTONG1_00887 [Chlamydia trachomatis
G/SotonG1]
gi|440533794|emb|CCP59304.1| hypothetical protein SOTONIA1_00889 [Chlamydia trachomatis
Ia/SotonIa1]
gi|440534688|emb|CCP60198.1| hypothetical protein SOTONIA3_00889 [Chlamydia trachomatis
Ia/SotonIa3]
gi|440535584|emb|CCP61094.1| hypothetical protein BOUR_00891 [Chlamydia trachomatis E/Bour]
Length = 193
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 98/184 (53%), Gaps = 9/184 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ +++ VV GDT+VDATCGNG D L + +++ G + DIQ EAL ++
Sbjct: 16 SHSIFRQVVEPGDTIVDATCGNGKDALFLAQLL---RGKGHLVVYDIQQEALDRATANFQ 72
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
E+ ++++ H ++E +L +NLGYLP GDK + T SE+T ++
Sbjct: 73 SGLLAEERAIIEMKLCSHEYLQE-----QGAKLFHYNLGYLPSGDKQITTCSESTVTSIY 127
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
A ++ P G++S+V Y GH G EL VE A L W C +NR AP L F
Sbjct: 128 KALELVAPSGIVSVVCYPGHQEGAAELCCVEQVAADLDPSMWEVCTHYSVNRRNAPRL-F 186
Query: 264 LFKR 267
LF+R
Sbjct: 187 LFRR 190
>gi|15605565|ref|NP_220351.1| rRNA methylase [Chlamydia trachomatis D/UW-3/CX]
gi|76789575|ref|YP_328661.1| SAM-dependent methyltransferase [Chlamydia trachomatis A/HAR-13]
gi|237803262|ref|YP_002888456.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
B/Jali20/OT]
gi|237805183|ref|YP_002889337.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255311670|ref|ZP_05354240.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
6276]
gi|255317971|ref|ZP_05359217.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
6276s]
gi|255349234|ref|ZP_05381241.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis 70]
gi|255503771|ref|ZP_05382161.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
70s]
gi|255507452|ref|ZP_05383091.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
D(s)2923]
gi|376282842|ref|YP_005156668.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
A2497]
gi|385240380|ref|YP_005808222.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
G/9768]
gi|385241308|ref|YP_005809149.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
G/11222]
gi|385242235|ref|YP_005810075.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
E/11023]
gi|385243157|ref|YP_005810996.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
G/9301]
gi|385245845|ref|YP_005814668.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
E/150]
gi|385246765|ref|YP_005815587.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
G/11074]
gi|386263188|ref|YP_005816467.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
Sweden2]
gi|389858527|ref|YP_006360769.1| SAM-dependent methyltransferase [Chlamydia trachomatis F/SW4]
gi|389859403|ref|YP_006361644.1| SAM-dependent methyltransferase [Chlamydia trachomatis E/SW3]
gi|389860279|ref|YP_006362519.1| SAM-dependent methyltransferase [Chlamydia trachomatis F/SW5]
gi|3329301|gb|AAC68427.1| putative rRNA methylase [Chlamydia trachomatis D/UW-3/CX]
gi|76168105|gb|AAX51113.1| SAM-dependent methyltransferase [Chlamydia trachomatis A/HAR-13]
gi|231273483|emb|CAX10399.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231274496|emb|CAX11292.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
B/Jali20/OT]
gi|289525876|emb|CBJ15358.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
Sweden2]
gi|296435461|gb|ADH17639.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
E/150]
gi|296436385|gb|ADH18559.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
G/9768]
gi|296437316|gb|ADH19486.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
G/11222]
gi|296438244|gb|ADH20405.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
G/11074]
gi|296439178|gb|ADH21331.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
E/11023]
gi|297140745|gb|ADH97503.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
G/9301]
gi|371908872|emb|CAX09505.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
A2497]
gi|380249599|emb|CCE14896.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
F/SW5]
gi|380250474|emb|CCE14007.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
F/SW4]
gi|380251352|emb|CCE13118.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
E/SW3]
Length = 194
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 98/184 (53%), Gaps = 9/184 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ +++ VV GDT+VDATCGNG D L + +++ G + DIQ EAL ++
Sbjct: 17 SHSIFRQVVEPGDTIVDATCGNGKDALFLAQLL---RGKGHLVVYDIQQEALDRATANFQ 73
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
E+ ++++ H ++E +L +NLGYLP GDK + T SE+T ++
Sbjct: 74 SGLLAEERAIIEMKLCSHEYLQE-----QGAKLFHYNLGYLPSGDKQITTCSESTVTSIY 128
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
A ++ P G++S+V Y GH G EL VE A L W C +NR AP L F
Sbjct: 129 KALELVAPSGIVSVVCYPGHQEGAAELCCVEQVAADLDPSMWEVCTHYSVNRRNAPRL-F 187
Query: 264 LFKR 267
LF+R
Sbjct: 188 LFRR 191
>gi|421767269|ref|ZP_16204025.1| SAM-dependent methyltransferase, MraW methylase family [Lactococcus
garvieae DCC43]
gi|407624267|gb|EKF51039.1| SAM-dependent methyltransferase, MraW methylase family [Lactococcus
garvieae DCC43]
Length = 179
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 106/185 (57%), Gaps = 14/185 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + V+ GD V+DAT GNG+DT+ + ++ + VY DIQ EA+KST ++L
Sbjct: 8 AHKMLSQTVKTGDIVIDATMGNGWDTVFLAELTNN------VYAFDIQKEAIKSTEAMLS 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ +A L H +++ V + V+ FNLGYLP DKS+IT +TT ALE
Sbjct: 62 EKRLQAH-----LILDGHENIDKYV--TQPVKAAIFNLGYLPRTDKSIITRPDTTLKALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLV 262
++ L+P G I +V+Y GH GG+ E + V ++A +L +W K++ +N+ P L+
Sbjct: 115 ILKKKLLPQGQIMIVIYYGHEGGQVEKDTVVSWASALPQAEWHVMKYEPMNQIHNPPFLI 174
Query: 263 FLFKR 267
+ KR
Sbjct: 175 CIEKR 179
>gi|42783939|ref|NP_981186.1| hypothetical protein BCE_4893 [Bacillus cereus ATCC 10987]
gi|42739869|gb|AAS43794.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
Length = 190
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD VDAT GNGYDT + ++V D G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAVDATLGNGYDTCFLAEIVGDN---GKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++S+ TT EK L + L + H + ++P+ ++ FNLGYLPGGD
Sbjct: 57 AIESS------TTRLKEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E ++ P G+I +V+Y GHP G+ E +AV FA L
Sbjct: 111 KHIVTKPNSTISAIEQLLEVIAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|407981096|ref|ZP_11161851.1| rRNA methyltransferase [Bacillus sp. HYC-10]
gi|407412062|gb|EKF33916.1| rRNA methyltransferase [Bacillus sp. HYC-10]
Length = 191
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 98/177 (55%), Gaps = 10/177 (5%)
Query: 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG 152
+KGD V+DAT GNG+DT + +V + G V+ D+Q EA++ TS+ L +
Sbjct: 19 QKGDIVIDATMGNGHDTRYLADLVGKD---GQVFAFDVQKEAIEQTSNRLGEQYP----- 70
Query: 153 LVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V L + H +M +P ++ A FNLGYLPGGDK+V T + TT A++ L
Sbjct: 71 YVHLIHDGHEKMAAHLPADAYGQISAAVFNLGYLPGGDKTVTTQAHTTIEAIKQLLDWLK 130
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
PGGLI +V+Y GHP G++E E + + RSL ++ +Q +N P V ++
Sbjct: 131 PGGLIVLVIYHGHPEGKKEKEVLLDYCRSLHHEEVQVLSYQYMNIHNDPPFVVAIEK 187
>gi|330443800|ref|YP_004376786.1| rRNA methylase [Chlamydophila pecorum E58]
gi|328806910|gb|AEB41083.1| rRNA methylase [Chlamydophila pecorum E58]
Length = 193
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 102/181 (56%), Gaps = 8/181 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ V+ VV GDTVVDATCG G D+L++ +++ E G + DIQ EAL+S L
Sbjct: 16 SHEVFHDVVVPGDTVVDATCGRGLDSLVLARLLQGE---GKLVVYDIQQEALESAQKLFM 72
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ ++ E +++L H E T V+L+ +NLGYLP G+K + T TT +LE
Sbjct: 73 HSLTEKEASIIELKACSHEVFTE-----TQVKLIHYNLGYLPLGNKEITTLENTTLKSLE 127
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+A + + P G+I++V Y GH G E AVE +A L W+ ++NR AP L+
Sbjct: 128 SALQAITPQGVITVVCYPGHDEGARETLAVERWAGRLDPKQWLVSIHYIVNRLKAPRLLV 187
Query: 264 L 264
+
Sbjct: 188 I 188
>gi|385244036|ref|YP_005811882.1| SAM-dependent methyltransferase [Chlamydia trachomatis D-EC]
gi|385244916|ref|YP_005812760.1| SAM-dependent methyltransferase [Chlamydia trachomatis D-LC]
gi|385270573|ref|YP_005813733.1| SAM-dependent methyltransferase [Chlamydia trachomatis A2497]
gi|297748959|gb|ADI51505.1| SAM-dependent methyltransferase [Chlamydia trachomatis D-EC]
gi|297749839|gb|ADI52517.1| SAM-dependent methyltransferase [Chlamydia trachomatis D-LC]
gi|347975713|gb|AEP35734.1| SAM-dependent methyltransferase [Chlamydia trachomatis A2497]
Length = 202
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 98/184 (53%), Gaps = 9/184 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ +++ VV GDT+VDATCGNG D L + +++ G + DIQ EAL ++
Sbjct: 25 SHSIFRQVVEPGDTIVDATCGNGKDALFLAQLL---RGKGHLVVYDIQQEALDRATANFQ 81
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
E+ ++++ H ++E +L +NLGYLP GDK + T SE+T ++
Sbjct: 82 SGLLAEERAIIEMKLCSHEYLQE-----QGAKLFHYNLGYLPSGDKQITTCSESTVTSIY 136
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
A ++ P G++S+V Y GH G EL VE A L W C +NR AP L F
Sbjct: 137 KALELVAPSGIVSVVCYPGHQEGAAELCCVEQVAADLDPSMWEVCTHYSVNRRNAPRL-F 195
Query: 264 LFKR 267
LF+R
Sbjct: 196 LFRR 199
>gi|261408931|ref|YP_003245172.1| putative rRNA methylase [Paenibacillus sp. Y412MC10]
gi|261285394|gb|ACX67365.1| putative rRNA methylase [Paenibacillus sp. Y412MC10]
Length = 196
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 101/182 (55%), Gaps = 12/182 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT--SKA 149
+R GD +DAT G G DTL + K S G VY DIQ +AL+ T LDK + A
Sbjct: 18 LRPGDIALDATAGTGADTLYLAKCTG---SKGKVYAFDIQEQALQLTRERLDKEPPGTLA 74
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPG--GDKSVITTSETTKMALEAA 205
E V L HS M E VP+ R+ + FNLGYLP DK ++T + +T ALEAA
Sbjct: 75 E---VSLLLQSHSLMRECVPEIEHGRMGAIMFNLGYLPADSSDKRIMTETASTLTALEAA 131
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
+L PGG+I++V+Y GH GG E +AV+A+A L ++ L R AP L+ L
Sbjct: 132 IELLRPGGIITIVLYPGHKGGDAEADAVQAWAGELPQHKVQTILYRGLQRSEAPYLIALE 191
Query: 266 KR 267
++
Sbjct: 192 RK 193
>gi|357013661|ref|ZP_09078660.1| hypothetical protein PelgB_29651 [Paenibacillus elgii B69]
Length = 190
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 105/187 (56%), Gaps = 9/187 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + + V+ G+TVVD T G G DT + ++V +G V+ DIQ +AL T+S L+
Sbjct: 10 AHKLIEERVQPGETVVDGTAGGGVDTAFLARLVG---PSGIVHAFDIQQQALDRTASRLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETTKMA 201
+ + V+L H M + +P+ R+ V FNLGYLPG D +T +T A
Sbjct: 67 QECPGRD---VRLHLRSHEAMLDAIPEENHGRIGAVMFNLGYLPGADHETVTEPASTLAA 123
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPV 260
LEA+ R++ GG+I++V+Y GH GG EE VE +A SL + +++ +N+ P
Sbjct: 124 LEASARLIRRGGIITIVLYTGHSGGLEEAAEVERWAASLPQKHFQTLQYRFMNQINHPPY 183
Query: 261 LVFLFKR 267
L+ + KR
Sbjct: 184 LIAIEKR 190
>gi|335029810|ref|ZP_08523313.1| putative rRNA methylase [Streptococcus infantis SK1076]
gi|334268110|gb|EGL86557.1| putative rRNA methylase [Streptococcus infantis SK1076]
Length = 185
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ D VVDAT GNGYDTL + K+ A VY DIQ +AL+ TS +
Sbjct: 8 AHDFLAQVITPEDIVVDATMGNGYDTLFLAKL------AKQVYAFDIQEQALEKTSQRI- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
E GL V L H ++E V T V+ FNLGYLP DKS+IT +TT A
Sbjct: 61 -----QEAGLTNVDLILQGHETVDEYV---TEVKAAIFNLGYLPSADKSIITQPQTTLEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE ++LI GG I++++Y GH GG E +AV F L ++ ++ LN+ P
Sbjct: 113 LEKLCQMLIKGGRIAIMIYYGHEGGDIERDAVLDFVSQLPQQEYTATIYRTLNQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|166154174|ref|YP_001654292.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
434/Bu]
gi|166155049|ref|YP_001653304.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335418|ref|ZP_07223662.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
L2tet1]
gi|165930162|emb|CAP03646.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
434/Bu]
gi|165931037|emb|CAP06600.1| putative SAM-dependent methyltransferase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 194
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 98/184 (53%), Gaps = 9/184 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ +++ VV GDT+VDATCGNG D L + +++ G + DIQ EAL ++
Sbjct: 17 SHSIFRQVVEPGDTIVDATCGNGKDALFLAQLL---RGKGRLVVYDIQQEALDRATANFQ 73
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
E+ ++++ H ++E +L +NLGYLP GDK + T SE+T ++
Sbjct: 74 SGLLAEERAIIEMKLCSHEYLQE-----QGAKLFHYNLGYLPSGDKQITTCSESTVTSIY 128
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
A ++ P G++S+V Y GH G EL VE A L W C +NR AP L F
Sbjct: 129 KALELVAPSGIVSVVCYPGHQEGAAELCCVEQVATDLDPSMWEVCTHYSVNRRNAPRL-F 187
Query: 264 LFKR 267
LF+R
Sbjct: 188 LFRR 191
>gi|339625588|ref|YP_004717067.1| rRNA methylase family protein [Chlamydia trachomatis L2c]
gi|339461316|gb|AEJ77819.1| rRNA methylase family protein [Chlamydia trachomatis L2c]
gi|440526648|emb|CCP52132.1| hypothetical protein L2B8200_00883 [Chlamydia trachomatis
L2b/8200/07]
gi|440536472|emb|CCP61985.1| hypothetical protein L2B795_00883 [Chlamydia trachomatis L2b/795]
gi|440537365|emb|CCP62879.1| hypothetical protein L1440_00886 [Chlamydia trachomatis L1/440/LN]
gi|440538254|emb|CCP63768.1| hypothetical protein L11322_00883 [Chlamydia trachomatis
L1/1322/p2]
gi|440539144|emb|CCP64658.1| hypothetical protein L1115_00883 [Chlamydia trachomatis L1/115]
gi|440540034|emb|CCP65548.1| hypothetical protein L1224_00884 [Chlamydia trachomatis L1/224]
gi|440540924|emb|CCP66438.1| hypothetical protein L225667R_00884 [Chlamydia trachomatis
L2/25667R]
gi|440541812|emb|CCP67326.1| hypothetical protein L3404_00882 [Chlamydia trachomatis L3/404/LN]
gi|440542701|emb|CCP68215.1| hypothetical protein L2BUCH2_00883 [Chlamydia trachomatis
L2b/UCH-2]
gi|440543592|emb|CCP69106.1| hypothetical protein L2BCAN2_00882 [Chlamydia trachomatis
L2b/Canada2]
gi|440544483|emb|CCP69997.1| hypothetical protein L2BLST_00883 [Chlamydia trachomatis L2b/LST]
gi|440545373|emb|CCP70887.1| hypothetical protein L2BAMS1_00883 [Chlamydia trachomatis L2b/Ams1]
gi|440546263|emb|CCP71777.1| hypothetical protein L2BCV204_00883 [Chlamydia trachomatis
L2b/CV204]
gi|440914525|emb|CCP90942.1| hypothetical protein L2BAMS2_00883 [Chlamydia trachomatis L2b/Ams2]
gi|440915415|emb|CCP91832.1| hypothetical protein L2BAMS3_00883 [Chlamydia trachomatis L2b/Ams3]
gi|440916307|emb|CCP92724.1| hypothetical protein L2BCAN1_00885 [Chlamydia trachomatis
L2b/Canada1]
gi|440917200|emb|CCP93617.1| hypothetical protein L2BAMS4_00883 [Chlamydia trachomatis L2b/Ams4]
gi|440918091|emb|CCP94508.1| hypothetical protein L2BAMS5_00884 [Chlamydia trachomatis L2b/Ams5]
Length = 193
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 98/184 (53%), Gaps = 9/184 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ +++ VV GDT+VDATCGNG D L + +++ G + DIQ EAL ++
Sbjct: 16 SHSIFRQVVEPGDTIVDATCGNGKDALFLAQLL---RGKGRLVVYDIQQEALDRATANFQ 72
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
E+ ++++ H ++E +L +NLGYLP GDK + T SE+T ++
Sbjct: 73 SGLLAEERAIIEMKLCSHEYLQE-----QGAKLFHYNLGYLPSGDKQITTCSESTVTSIY 127
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
A ++ P G++S+V Y GH G EL VE A L W C +NR AP L F
Sbjct: 128 KALELVAPSGIVSVVCYPGHQEGAAELCCVEQVATDLDPSMWEVCTHYSVNRRNAPRL-F 186
Query: 264 LFKR 267
LF+R
Sbjct: 187 LFRR 190
>gi|293365734|ref|ZP_06612443.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|419777773|ref|ZP_14303680.1| MraW methylase-like family protein [Streptococcus oralis SK10]
gi|291316102|gb|EFE56546.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|383187930|gb|EIC80369.1| MraW methylase-like family protein [Streptococcus oralis SK10]
Length = 185
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 101/186 (54%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKKVYAFDIQEKALEKTQERLD 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ G+ +L H ++++ V ++ A FNLGYLP DKSVIT +TT A
Sbjct: 62 QA------GMTNAQLILQGHEKLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIKA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 113 LEKLCHLLVKGGRIAIMIYYGHEGGDTERDAVLEFVSQLNQQEYTAAIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|157693437|ref|YP_001487899.1| rRNA methyltransferase [Bacillus pumilus SAFR-032]
gi|157682195|gb|ABV63339.1| possible rRNA methyltransferase [Bacillus pumilus SAFR-032]
Length = 191
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 10/177 (5%)
Query: 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG 152
+KGD V+DAT GNG+DTL + +V + G V+ D+Q EA++ T L +
Sbjct: 19 QKGDIVIDATMGNGHDTLYLADLVGPD---GQVFAFDVQEEAIEQTRKRLGEGYP----- 70
Query: 153 LVKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V L + H ++ +P+ ++ FNLGYLPGGDK+V T + TT A++ L
Sbjct: 71 YVHLIHDGHEKLAHHLPRDVYEQISGAVFNLGYLPGGDKAVTTQAHTTIEAIKQLLDWLK 130
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
PGGLI +V+Y GHP G+ E E + + RSLS + +Q +N P V ++
Sbjct: 131 PGGLIVLVIYHGHPEGKREKEVLLDYCRSLSHEKVQVLSYQYMNIQNDPPFVVAIEK 187
>gi|75763382|ref|ZP_00743117.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218899906|ref|YP_002448317.1| hypothetical protein BCG9842_B0375 [Bacillus cereus G9842]
gi|402563735|ref|YP_006606459.1| hypothetical protein BTG_25105 [Bacillus thuringiensis HD-771]
gi|423358158|ref|ZP_17335661.1| hypothetical protein IC1_00138 [Bacillus cereus VD022]
gi|423560736|ref|ZP_17537012.1| hypothetical protein II5_00140 [Bacillus cereus MSX-A1]
gi|434377904|ref|YP_006612548.1| hypothetical protein BTF1_22305 [Bacillus thuringiensis HD-789]
gi|74489132|gb|EAO52613.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218545685|gb|ACK98079.1| conserved hypothetical protein [Bacillus cereus G9842]
gi|401086651|gb|EJP94873.1| hypothetical protein IC1_00138 [Bacillus cereus VD022]
gi|401203273|gb|EJR10113.1| hypothetical protein II5_00140 [Bacillus cereus MSX-A1]
gi|401792387|gb|AFQ18426.1| hypothetical protein BTG_25105 [Bacillus thuringiensis HD-771]
gi|401876461|gb|AFQ28628.1| hypothetical protein BTF1_22305 [Bacillus thuringiensis HD-789]
Length = 190
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D +G V+G DIQ EA++S+
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGD---SGKVFGFDIQKEAIESS----- 61
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
TT EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 62 -TTHLKEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 ISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLTFAEKLDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|407717401|ref|YP_006838681.1| MraW methylase family SAM-dependent methyltransferase
[Cycloclasticus sp. P1]
gi|407257737|gb|AFT68178.1| SAM-dependent methyltransferase, MraW methylase family
[Cycloclasticus sp. P1]
Length = 189
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 100/167 (59%), Gaps = 13/167 (7%)
Query: 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKS 137
+L+ A N + ++ +GD VDAT GNG+DTL + K + + AG VY D+Q+ AL +
Sbjct: 4 SLVNQAHNNIANYL-SEGDIAVDATMGNGFDTLFLAKQIGE---AGKVYSFDLQAAALHT 59
Query: 138 TSSLLDKTTSKAEKGLVK--LFNMCHSRMEEIVPKST--AVRLVAFNLGYLPGGDKSVIT 193
T L K EK L + L HS++ + K ++R FNLGYLPG DK + T
Sbjct: 60 TEQRLSK-----EKLLHRVCLIQDDHSQLSAYLTKDDVHSIRCAMFNLGYLPGSDKLLQT 114
Query: 194 TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSL 240
T +T ALE+A +L G+IS++ Y GH GGREE E+V+++A++L
Sbjct: 115 TPNSTLQALESAIALLAQPGIISILAYTGHTGGREETESVKSWAKTL 161
>gi|436840987|ref|YP_007325365.1| putative rRNA methylase ytqB [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
gi|432169893|emb|CCO23264.1| putative rRNA methylase ytqB [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
Length = 190
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 99/186 (53%), Gaps = 9/186 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + V+ G VDAT GNGYDT+ + + E G V+ DIQ EA++ T L+
Sbjct: 10 AKSILCEVLEPGCIAVDATAGNGYDTVYLSRQAGVE---GRVFAFDIQEEAIEQTRQRLN 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKS--TAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ LF+ H M ++P+ V +V FNLG+LPG DKS++T ETT A
Sbjct: 67 EECMPENW---TLFHSGHENMLSLIPEEFHGKVNIVMFNLGFLPGSDKSIVTRPETTLKA 123
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV- 260
L + IL G +I + +Y GHPGG EE AV + +L + +MLN+P P+
Sbjct: 124 LADSLEILATGAMICIAIYAGHPGGAEEDAAVREYCTALDYHYVRVIQSEMLNKPGYPIR 183
Query: 261 LVFLFK 266
L+FL K
Sbjct: 184 LLFLTK 189
>gi|218232477|ref|YP_002369548.1| hypothetical protein BCB4264_A4862 [Bacillus cereus B4264]
gi|218160434|gb|ACK60426.1| conserved hypothetical protein [Bacillus cereus B4264]
Length = 190
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD VDAT GNG+DT + ++V D G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++S+ TT EK L + L + H + I+P+ ++ FNLGYLPGGD
Sbjct: 57 AIESS------TTRLKEKKLFERTVLVHDSHDTLLSILPEDAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E ++ P G+I +V+Y GHP G+ E +AV FA L
Sbjct: 111 KHIVTKPNSTISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|30022820|ref|NP_834451.1| SAM-dependent methyltransferase [Bacillus cereus ATCC 14579]
gi|29898379|gb|AAP11652.1| SAM-dependent methyltransferase [Bacillus cereus ATCC 14579]
Length = 190
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S+
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESS----- 61
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
TT EK L + L + H + I+P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 62 -TTRLKEKELFERTVLVHDSHDTLLSILPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 ISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|30264819|ref|NP_847196.1| hypothetical protein BA_5002 [Bacillus anthracis str. Ames]
gi|47530304|ref|YP_021653.1| hypothetical protein GBAA_5002 [Bacillus anthracis str. 'Ames
Ancestor']
gi|49187638|ref|YP_030891.1| hypothetical protein BAS4647 [Bacillus anthracis str. Sterne]
gi|65322120|ref|ZP_00395079.1| COG0500: SAM-dependent methyltransferases [Bacillus anthracis str.
A2012]
gi|165869764|ref|ZP_02214422.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167633949|ref|ZP_02392272.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|167638131|ref|ZP_02396409.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170685777|ref|ZP_02877000.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|170705366|ref|ZP_02895830.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|177651183|ref|ZP_02934014.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190568308|ref|ZP_03021216.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|227817544|ref|YP_002817553.1| hypothetical protein BAMEG_5036 [Bacillus anthracis str. CDC 684]
gi|229604073|ref|YP_002869027.1| hypothetical protein BAA_5015 [Bacillus anthracis str. A0248]
gi|254687560|ref|ZP_05151416.1| hypothetical protein BantC_27450 [Bacillus anthracis str.
CNEVA-9066]
gi|254725125|ref|ZP_05186908.1| hypothetical protein BantA1_22099 [Bacillus anthracis str. A1055]
gi|254736863|ref|ZP_05194569.1| hypothetical protein BantWNA_16981 [Bacillus anthracis str. Western
North America USA6153]
gi|254741898|ref|ZP_05199585.1| hypothetical protein BantKB_12908 [Bacillus anthracis str. Kruger
B]
gi|254754504|ref|ZP_05206539.1| hypothetical protein BantV_18637 [Bacillus anthracis str. Vollum]
gi|254757337|ref|ZP_05209364.1| hypothetical protein BantA9_03431 [Bacillus anthracis str.
Australia 94]
gi|386738653|ref|YP_006211834.1| MraW methylase family SAM-dependent methyltransferase [Bacillus
anthracis str. H9401]
gi|421508617|ref|ZP_15955529.1| MraW methylase family SAM-dependent methyltransferase [Bacillus
anthracis str. UR-1]
gi|421639840|ref|ZP_16080429.1| MraW methylase family SAM-dependent methyltransferase [Bacillus
anthracis str. BF1]
gi|30259494|gb|AAP28682.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
gi|47505452|gb|AAT34128.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49181565|gb|AAT56941.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|164714593|gb|EDR20112.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167513948|gb|EDR89316.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|167530750|gb|EDR93452.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170129491|gb|EDS98354.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|170670241|gb|EDT20981.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|172083009|gb|EDT68071.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190560564|gb|EDV14541.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|227006163|gb|ACP15906.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
gi|229268481|gb|ACQ50118.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
gi|384388505|gb|AFH86166.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
anthracis str. H9401]
gi|401821240|gb|EJT20398.1| MraW methylase family SAM-dependent methyltransferase [Bacillus
anthracis str. UR-1]
gi|403392928|gb|EJY90175.1| MraW methylase family SAM-dependent methyltransferase [Bacillus
anthracis str. BF1]
Length = 190
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D +G V+G DIQ EA++S+
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGD---SGKVFGFDIQKEAIESS----- 61
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
TT EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 62 -TTRLKEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 ISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|423456994|ref|ZP_17433791.1| hypothetical protein IEI_00134 [Bacillus cereus BAG5X2-1]
gi|401149213|gb|EJQ56689.1| hypothetical protein IEI_00134 [Bacillus cereus BAG5X2-1]
Length = 190
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S+
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESS----- 61
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
TT EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 62 -TTRLKEKELFERTVLIHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 ISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLTFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|220932037|ref|YP_002508945.1| putative rRNA methylase [Halothermothrix orenii H 168]
gi|219993347|gb|ACL69950.1| putative rRNA methylase [Halothermothrix orenii H 168]
Length = 196
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 105/176 (59%), Gaps = 7/176 (3%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V+KG TV+DAT GNG+DT + +V ++ G VY DIQ +A++ T +LL K + E+
Sbjct: 26 VKKGSTVIDATAGNGHDTCFLASLVGEK---GQVYSFDIQKKAIEKTKALL-KEQNLEER 81
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V L + H ++ + K + V FNLGYLPGGDK +ITT +TT AL+ ++ P
Sbjct: 82 --VYLIHDGHENLDNYI-KGQFIDGVIFNLGYLPGGDKKIITTPDTTITALKKCLPLIKP 138
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG++ +V+Y GH GG++E E + +A L+ ++ ++ +N+ P V K+
Sbjct: 139 GGIVVIVIYTGHEGGKDEEEKIIKYAEKLNYTEYNVLRYHFINQRKTPPQVLAIKK 194
>gi|379010836|ref|YP_005268648.1| S-adenosyl-L-methionine-dependent methyltransferase MraW2
[Acetobacterium woodii DSM 1030]
gi|375301625|gb|AFA47759.1| S-adenosyl-L-methionine-dependent methyltransferase MraW2
[Acetobacterium woodii DSM 1030]
Length = 207
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 101/178 (56%), Gaps = 11/178 (6%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+ GD VVDAT G G D+L +L+ V S G V+ D+Q+ A++ T +++ +
Sbjct: 33 VINPGDIVVDATAGTGQDSLFLLQCVG---STGRVFSFDVQAAAIQQTKKMIEDSGCS-- 87
Query: 151 KGLVKLFNMCHSRMEEIVPKST----AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
G + H+ + E++ + V+ V FNLGY PGGD+ ++T ETT AL A
Sbjct: 88 -GKITFVQKSHALIVEVLKQENIQLCTVKAVMFNLGYFPGGDQKLVTNVETTLKALSGAL 146
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
+L PGG+I++ +Y GHPGG E EAV +A +L ++ F+ LNR L P LV +
Sbjct: 147 ALLAPGGMITVCLYSGHPGGLAESEAVIKWAETLE-KPFMAHHFRTLNRKLPPTLVLI 203
>gi|206969833|ref|ZP_03230787.1| conserved hypothetical protein [Bacillus cereus AH1134]
gi|365158461|ref|ZP_09354655.1| hypothetical protein HMPREF1014_00118 [Bacillus sp. 7_6_55CFAA_CT2]
gi|423411453|ref|ZP_17388573.1| hypothetical protein IE1_00757 [Bacillus cereus BAG3O-2]
gi|423426889|ref|ZP_17403920.1| hypothetical protein IE5_04578 [Bacillus cereus BAG3X2-2]
gi|423432761|ref|ZP_17409765.1| hypothetical protein IE7_04577 [Bacillus cereus BAG4O-1]
gi|423438196|ref|ZP_17415177.1| hypothetical protein IE9_04377 [Bacillus cereus BAG4X12-1]
gi|206735521|gb|EDZ52689.1| conserved hypothetical protein [Bacillus cereus AH1134]
gi|363626735|gb|EHL77707.1| hypothetical protein HMPREF1014_00118 [Bacillus sp. 7_6_55CFAA_CT2]
gi|401107508|gb|EJQ15455.1| hypothetical protein IE1_00757 [Bacillus cereus BAG3O-2]
gi|401109804|gb|EJQ17722.1| hypothetical protein IE5_04578 [Bacillus cereus BAG3X2-2]
gi|401114217|gb|EJQ22079.1| hypothetical protein IE7_04577 [Bacillus cereus BAG4O-1]
gi|401118576|gb|EJQ26406.1| hypothetical protein IE9_04377 [Bacillus cereus BAG4X12-1]
Length = 190
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 106/199 (53%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD VDAT GNG+DT + ++V D +G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAVDATLGNGHDTCFLAEIVGD---SGKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++S+ TT EK L + L + H + ++P+ ++ FNLGYLPGGD
Sbjct: 57 AIESS------TTRLKEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E ++ P G+I +V+Y GHP G+ E +AV FA L
Sbjct: 111 KHIVTKPNSTISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|218905984|ref|YP_002453818.1| hypothetical protein BCAH820_4872 [Bacillus cereus AH820]
gi|218536553|gb|ACK88951.1| conserved hypothetical protein [Bacillus cereus AH820]
Length = 190
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D +G V+G DIQ EA++S+
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGD---SGKVFGFDIQKEAIESS----- 61
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
TT EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 62 -TTRLKEKELFERTVLVHDSHDTLLSVLPEGAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 ISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|228988006|ref|ZP_04148110.1| hypothetical protein bthur0001_46710 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228771723|gb|EEM20185.1| hypothetical protein bthur0001_46710 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 177
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 14/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S+ TT EK
Sbjct: 5 VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESS------TTRLKEK 55
Query: 152 GLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T A+E
Sbjct: 56 ELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNSTISAIEQLL 115
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+ P + +
Sbjct: 116 EVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYSFINQQNNPPFIVAIE 175
Query: 267 R 267
+
Sbjct: 176 K 176
>gi|433443499|ref|ZP_20408881.1| rRNA methylase [Anoxybacillus flavithermus TNO-09.006]
gi|432002095|gb|ELK22955.1| rRNA methylase [Anoxybacillus flavithermus TNO-09.006]
Length = 191
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 17/204 (8%)
Query: 67 LPLCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVY 126
+ L + P + +LI +A V++GD VVDAT GNG+DTL + + V + G V+
Sbjct: 2 MKLMRILPFARSLIDLA--------VKEGDIVVDATVGNGHDTLYLAERVGE---YGHVF 50
Query: 127 GLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYL 184
G DIQ++A+++T+ L + + V L H+ ++ +P R+ FNLGYL
Sbjct: 51 GFDIQAQAIENTTKRLHEHHIETR---VTLVQASHAELDAHIPPEYKGRITGAMFNLGYL 107
Query: 185 PGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDD 244
PGGDK ++T +T A+E I+ P G+I +V+Y GHP G E +A+ + ++
Sbjct: 108 PGGDKQIVTKPNSTIAAIEQLLDIMAPEGIIVLVIYHGHPEGAIERDALLQYVSTIDQQR 167
Query: 245 WICCKFQMLNR-PLAPVLVFLFKR 267
+++ +N+ P +V + KR
Sbjct: 168 AHVIRYEFMNQINHPPFIVAIEKR 191
>gi|403380037|ref|ZP_10922094.1| hypothetical protein PJC66_09454 [Paenibacillus sp. JC66]
Length = 195
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 95/170 (55%), Gaps = 7/170 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V+ G+ V+DAT GNG DTL + K+ G VYG D+Q AL+ + + K K
Sbjct: 18 VQPGEPVIDATVGNGVDTLFLSKLTG---CKGEVYGFDVQQIALEKAARRWQQDPGK--K 72
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V N H+ M+ IV + A FNLGYLPG D IT +T AL+++ +L
Sbjct: 73 AGVHWLNCSHAEMKSIVSPHHHGHIAAIMFNLGYLPGADPGTITLPASTLAALQSSVELL 132
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
GG++++V+Y GHPGG+EE +AVE +A L+ + K++ +N+ P
Sbjct: 133 RIGGILTVVLYTGHPGGQEEADAVEEWAAKLNPKSFQVIKYERVNQSKRP 182
>gi|149177324|ref|ZP_01855929.1| Putative rRNA methylase superfamily protein [Planctomyces maris DSM
8797]
gi|148843849|gb|EDL58207.1| Putative rRNA methylase superfamily protein [Planctomyces maris DSM
8797]
Length = 189
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 9/168 (5%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
+T A+ + V + G+T VDAT GNG+DT + ++ +G V+ +DIQ +AL T+
Sbjct: 4 LTDQAHALISQVFQPGETAVDATAGNGHDTRFLCELAG---KSGKVFAIDIQQQALDQTA 60
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSET 197
+L + E +L H + E++P R+ V FNLGYLPGGD ++IT +
Sbjct: 61 VML----QELEYHNFELICGDHRLISELIPTQYQGRIGAVMFNLGYLPGGDHNLITQQSS 116
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDW 245
T AL AA+ L PGG+++++ Y GHPGG EE A++ + LS ++
Sbjct: 117 TLTALNAAKEFLRPGGIMTILAYPGHPGGDEETVAIDQWLSQLSAIEY 164
>gi|126699666|ref|YP_001088563.1| rRNA methylase [Clostridium difficile 630]
gi|254975637|ref|ZP_05272109.1| hypothetical protein CdifQC_10019 [Clostridium difficile QCD-66c26]
gi|255093024|ref|ZP_05322502.1| hypothetical protein CdifC_10279 [Clostridium difficile CIP 107932]
gi|255101181|ref|ZP_05330158.1| hypothetical protein CdifQCD-6_10259 [Clostridium difficile
QCD-63q42]
gi|255307055|ref|ZP_05351226.1| hypothetical protein CdifA_10732 [Clostridium difficile ATCC 43255]
gi|255314766|ref|ZP_05356349.1| hypothetical protein CdifQCD-7_10477 [Clostridium difficile
QCD-76w55]
gi|255517441|ref|ZP_05385117.1| hypothetical protein CdifQCD-_10066 [Clostridium difficile
QCD-97b34]
gi|255650551|ref|ZP_05397453.1| hypothetical protein CdifQCD_10241 [Clostridium difficile
QCD-37x79]
gi|255656020|ref|ZP_05401429.1| hypothetical protein CdifQCD-2_10044 [Clostridium difficile
QCD-23m63]
gi|260683649|ref|YP_003214934.1| hypothetical protein CD196_1913 [Clostridium difficile CD196]
gi|260687309|ref|YP_003218443.1| hypothetical protein CDR20291_1956 [Clostridium difficile R20291]
gi|296450551|ref|ZP_06892305.1| rRNA methylase [Clostridium difficile NAP08]
gi|296879327|ref|ZP_06903322.1| rRNA methylase [Clostridium difficile NAP07]
gi|306520499|ref|ZP_07406846.1| hypothetical protein CdifQ_11806 [Clostridium difficile QCD-32g58]
gi|384361276|ref|YP_006199128.1| hypothetical protein CDBI1_09900 [Clostridium difficile BI1]
gi|423089142|ref|ZP_17077504.1| putative rRNA methylase [Clostridium difficile 70-100-2010]
gi|115251103|emb|CAJ68934.1| putative rRNA methylase [Clostridium difficile 630]
gi|260209812|emb|CBA63659.1| conserved hypothetical protein [Clostridium difficile CD196]
gi|260213326|emb|CBE04904.1| conserved hypothetical protein [Clostridium difficile R20291]
gi|296260626|gb|EFH07467.1| rRNA methylase [Clostridium difficile NAP08]
gi|296429870|gb|EFH15722.1| rRNA methylase [Clostridium difficile NAP07]
gi|357558613|gb|EHJ40102.1| putative rRNA methylase [Clostridium difficile 70-100-2010]
Length = 192
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 105/190 (55%), Gaps = 8/190 (4%)
Query: 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKS 137
T IT ++++ +GD V+DAT GNGYDT + + V ++ G VY DIQ EA+KS
Sbjct: 8 TKITDINKFYLENIINEGDIVIDATMGNGYDTRYLAEKVGEK---GFVYAFDIQEEAIKS 64
Query: 138 TSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET 197
T L+K + VKL H +M + + + V V FNLGYLP S+IT +T
Sbjct: 65 TRKKLEK---EGYTDRVKLIFDGHEKMNQYIKEE--VSCVLFNLGYLPRAKHSIITKPDT 119
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
T A++ + +L G+IS+ +Y GH GG+EE + + +L+ D++ + + LN+
Sbjct: 120 TLKAIKLSLEMLKENGVISIAIYTGHDGGQEEKDCIYNLVNNLNQDEFNVLESKFLNQVN 179
Query: 258 APVLVFLFKR 267
P + L ++
Sbjct: 180 NPPQLILIEK 189
>gi|401684892|ref|ZP_10816766.1| MraW methylase-like family protein [Streptococcus sp. BS35b]
gi|418975403|ref|ZP_13523308.1| MraW methylase-like family protein [Streptococcus oralis SK1074]
gi|383347758|gb|EID25732.1| MraW methylase-like family protein [Streptococcus oralis SK1074]
gi|400184405|gb|EJO18649.1| MraW methylase-like family protein [Streptococcus sp. BS35b]
Length = 185
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 100/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTQERLD 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ G+ +L H +++ V ++ A FNLGYLP DKSVIT +TT A
Sbjct: 62 QA------GMTNAQLILQGHETLDQFVKEAKAG---IFNLGYLPSADKSVITQPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 113 LEKLCHLLVKGGRIAIMIYYGHEGGDTERDAVLDFVSQLNQQEYTAAIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|169829678|ref|YP_001699836.1| SAM-dependent methyltransferase [Lysinibacillus sphaericus C3-41]
gi|168994166|gb|ACA41706.1| SAM-dependent methyltransferase [Lysinibacillus sphaericus C3-41]
Length = 192
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 102/185 (55%), Gaps = 10/185 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST-SSLL 142
A + K V +GDTVVDAT GNG+DTL + ++V DE G VY D+Q +A+ +T LL
Sbjct: 10 AQQLLKDSVEEGDTVVDATAGNGHDTLFLAQLVGDE---GQVYAFDVQKKAVDATLHRLL 66
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL 202
D+ S + LV N H + + K A + FNLGYLPG + +IT TT A+
Sbjct: 67 DQ--SLEHRALV--LNKGHEEVANFIHKPVAAAI--FNLGYLPGSNHDIITKPTTTIQAI 120
Query: 203 EAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
E ++L GGLI +V+Y GHPGG+EE + V + L K++ LN+ P +
Sbjct: 121 EDLLKLLKVGGLIILVIYHGHPGGKEERDTVTDYVSQLPQKYVHVLKYEFLNQQNDPPFI 180
Query: 263 FLFKR 267
++
Sbjct: 181 IALEK 185
>gi|312143625|ref|YP_003995071.1| rRNA methylase [Halanaerobium hydrogeniformans]
gi|311904276|gb|ADQ14717.1| rRNA methylase [Halanaerobium hydrogeniformans]
Length = 190
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 101/162 (62%), Gaps = 7/162 (4%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157
++DAT GNG DTL M ++ D+++ + DIQ +A+K+T LL+K +A+ VK+
Sbjct: 26 LIDATAGNGKDTLFMAEL-TDQNTE--ILAFDIQKKAVKNTQKLLEKNNLQAQ---VKVI 79
Query: 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217
+ H+ +++ + ++ + LV FNLGYLPGGDKS+IT +++T A++ + L G+I +
Sbjct: 80 HDSHANLDKYINENQ-LSLVLFNLGYLPGGDKSIITKAQSTLEAVKKSLDFLKKYGIIIL 138
Query: 218 VVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
V+Y GH GG +E +A+ F +L + K++ +N+ P
Sbjct: 139 VIYKGHKGGLKEEKAIIDFVEALDYKKYNVLKYEFINQAAKP 180
>gi|228923508|ref|ZP_04086790.1| hypothetical protein bthur0011_44850 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228836146|gb|EEM81505.1| hypothetical protein bthur0011_44850 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 177
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 14/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S+ TT EK
Sbjct: 5 VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESS------TTRLKEK 55
Query: 152 GLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T A+E
Sbjct: 56 ELFERTVLVHDSHDTLLSVLPEGAKGKVTGAIFNLGYLPGGDKHIVTKPNSTISAIEQLL 115
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+ P + +
Sbjct: 116 EVMTPQGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNNPPFIVAIE 175
Query: 267 R 267
+
Sbjct: 176 K 176
>gi|423582961|ref|ZP_17559072.1| hypothetical protein IIA_04476 [Bacillus cereus VD014]
gi|423634358|ref|ZP_17610011.1| hypothetical protein IK7_00767 [Bacillus cereus VD156]
gi|401210270|gb|EJR17022.1| hypothetical protein IIA_04476 [Bacillus cereus VD014]
gi|401281144|gb|EJR87058.1| hypothetical protein IK7_00767 [Bacillus cereus VD156]
Length = 190
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD VDAT GNG+DT + ++V D G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++S+ TT EK L + L + H + ++P+ ++ FNLGYLPGGD
Sbjct: 57 AIESS------TTRLKEKELFERTVLVHDSHDTLLSVLPEGAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E ++ P G+I +V+Y GHP G+ E +AV FA L
Sbjct: 111 KHIVTKPNSTISAIEQLLEVMTPQGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|419814104|ref|ZP_14338906.1| hypothetical protein GMD2S_02574 [Streptococcus sp. GMD2S]
gi|419817429|ref|ZP_14341591.1| hypothetical protein GMD4S_04033 [Streptococcus sp. GMD4S]
gi|404466005|gb|EKA11369.1| hypothetical protein GMD4S_04033 [Streptococcus sp. GMD4S]
gi|404472215|gb|EKA16649.1| hypothetical protein GMD2S_02574 [Streptococcus sp. GMD2S]
Length = 185
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 98/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTQERLD 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ +L H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 62 QAGMTN----AQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+LI GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 115 KLCYLLIKGGRIAIMIYYGHEGGDTERDAVLDFVSQLNQQEYTAAIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|405760846|ref|YP_006701442.1| rRNA methylase [Streptococcus pneumoniae SPNA45]
gi|404277735|emb|CCM08280.1| putative rRNA methylase [Streptococcus pneumoniae SPNA45]
Length = 185
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +ALK T L
Sbjct: 8 AHDFLAEVVTKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQKQALKKTQERL- 60
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+A+ KL H +++ V K+ A FNLGYLP DKSVIT +TT ALE
Sbjct: 61 ---HQADLTNAKLILQGHETLDQFVTKAKAG---IFNLGYLPSADKSVITRPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 115 KLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|196032979|ref|ZP_03100392.1| conserved hypothetical protein [Bacillus cereus W]
gi|195994408|gb|EDX58363.1| conserved hypothetical protein [Bacillus cereus W]
Length = 190
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S+
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESS----- 61
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
TT EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 62 -TTRLKEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 ISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|49476826|ref|YP_038794.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|296505217|ref|YP_003666917.1| SAM-dependent methyltransferase [Bacillus thuringiensis BMB171]
gi|423549496|ref|ZP_17525823.1| hypothetical protein IGW_00127 [Bacillus cereus ISP3191]
gi|423640183|ref|ZP_17615801.1| hypothetical protein IK9_00128 [Bacillus cereus VD166]
gi|49328382|gb|AAT59028.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|296326269|gb|ADH09197.1| SAM-dependent methyltransferase [Bacillus thuringiensis BMB171]
gi|401191249|gb|EJQ98272.1| hypothetical protein IGW_00127 [Bacillus cereus ISP3191]
gi|401281582|gb|EJR87489.1| hypothetical protein IK9_00128 [Bacillus cereus VD166]
Length = 190
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S+
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESS----- 61
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
TT EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 62 -TTRLKEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 ISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|423584721|ref|ZP_17560808.1| hypothetical protein IIE_00133 [Bacillus cereus VD045]
gi|401235947|gb|EJR42414.1| hypothetical protein IIE_00133 [Bacillus cereus VD045]
Length = 190
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD VDAT GNG+DT + ++V D G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++S+ TT EK L + L + H + I+P+ ++ FNLGYLPGGD
Sbjct: 57 AIESS------TTRLKEKELFERTVLVHDSHDTLLSILPEDAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E ++ P G+I +V+Y GHP G+ E +AV FA L
Sbjct: 111 KHIVTKPNSTISAIEQLLDVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|418324741|ref|ZP_12935970.1| MraW methylase-like family protein [Staphylococcus pettenkoferi
VCU012]
gi|365224864|gb|EHM66123.1| MraW methylase-like family protein [Staphylococcus pettenkoferi
VCU012]
Length = 186
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 97/173 (56%), Gaps = 12/173 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++ V+DATCGNG+DTL + A ++ G VYG DIQ+ A+ T ++ ++
Sbjct: 18 IKEDSIVIDATCGNGHDTLYL----AQQTPQGYVYGFDIQATAISETEERVNGYSN---- 69
Query: 152 GLVKLFNMCHSRM-EEIVPKSTA-VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L H+ + + + P+ + FNLGYLP GDK++IT + +T A+EA +L
Sbjct: 70 --VQLIQDSHANVAQHLAPEHRGHIDAAIFNLGYLPHGDKTIITQAPSTIAAIEAIMEML 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
P G+I +V+Y GHPGG EE +A+ + + ++Q +N+ P +
Sbjct: 128 APEGIIILVIYHGHPGGTEEKDALLEYLSKIDQQKAHVLQYQFINQQNHPPFI 180
>gi|384188827|ref|YP_005574723.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410677150|ref|YP_006929521.1| putative rRNA methylase YtqB [Bacillus thuringiensis Bt407]
gi|423386269|ref|ZP_17363525.1| hypothetical protein ICE_04015 [Bacillus cereus BAG1X1-2]
gi|423527399|ref|ZP_17503844.1| hypothetical protein IGE_00951 [Bacillus cereus HuB1-1]
gi|423631475|ref|ZP_17607222.1| hypothetical protein IK5_04325 [Bacillus cereus VD154]
gi|423650649|ref|ZP_17626219.1| hypothetical protein IKA_04436 [Bacillus cereus VD169]
gi|452201228|ref|YP_007481309.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|326942536|gb|AEA18432.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401263612|gb|EJR69734.1| hypothetical protein IK5_04325 [Bacillus cereus VD154]
gi|401281320|gb|EJR87232.1| hypothetical protein IKA_04436 [Bacillus cereus VD169]
gi|401633699|gb|EJS51472.1| hypothetical protein ICE_04015 [Bacillus cereus BAG1X1-2]
gi|402453074|gb|EJV84881.1| hypothetical protein IGE_00951 [Bacillus cereus HuB1-1]
gi|409176279|gb|AFV20584.1| putative rRNA methylase YtqB [Bacillus thuringiensis Bt407]
gi|452106621|gb|AGG03561.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 190
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD VDAT GNG+DT + ++V D G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++S+ TT EK L + L + H + ++P+ ++ FNLGYLPGGD
Sbjct: 57 AIESS------TTRLKEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E ++ P G+I +V+Y GHP G+ E +AV FA L
Sbjct: 111 KHIVTKPNSTISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLTFAEELDQKQAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|228941931|ref|ZP_04104475.1| hypothetical protein bthur0008_45660 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228961019|ref|ZP_04122647.1| hypothetical protein bthur0005_44710 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228974862|ref|ZP_04135424.1| hypothetical protein bthur0003_46130 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228981455|ref|ZP_04141753.1| hypothetical protein bthur0002_46160 [Bacillus thuringiensis Bt407]
gi|228778280|gb|EEM26549.1| hypothetical protein bthur0002_46160 [Bacillus thuringiensis Bt407]
gi|228784866|gb|EEM32883.1| hypothetical protein bthur0003_46130 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228798652|gb|EEM45637.1| hypothetical protein bthur0005_44710 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228817764|gb|EEM63845.1| hypothetical protein bthur0008_45660 [Bacillus thuringiensis
serovar berliner ATCC 10792]
Length = 177
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 14/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S+ TT EK
Sbjct: 5 VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESS------TTRLKEK 55
Query: 152 GLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T A+E
Sbjct: 56 ELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNSTISAIEQLL 115
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+ P + +
Sbjct: 116 EVMAPEGIIVLVIYHGHPEGQVERDAVLTFAEELDQKQAHVLRYGFINQQNNPPFIVAIE 175
Query: 267 R 267
+
Sbjct: 176 K 176
>gi|206977282|ref|ZP_03238179.1| conserved hypothetical protein [Bacillus cereus H3081.97]
gi|217962239|ref|YP_002340809.1| hypothetical protein BCAH187_A4886 [Bacillus cereus AH187]
gi|222098222|ref|YP_002532279.1| SAM-dependent methyltransferase, mraw methylase family [Bacillus
cereus Q1]
gi|375286753|ref|YP_005107192.1| hypothetical protein BCN_4659 [Bacillus cereus NC7401]
gi|423355236|ref|ZP_17332861.1| hypothetical protein IAU_03310 [Bacillus cereus IS075]
gi|423373293|ref|ZP_17350632.1| hypothetical protein IC5_02348 [Bacillus cereus AND1407]
gi|423570976|ref|ZP_17547221.1| hypothetical protein II7_04197 [Bacillus cereus MSX-A12]
gi|423573553|ref|ZP_17549672.1| hypothetical protein II9_00774 [Bacillus cereus MSX-D12]
gi|423603566|ref|ZP_17579459.1| hypothetical protein IIK_00147 [Bacillus cereus VD102]
gi|423657699|ref|ZP_17632998.1| hypothetical protein IKG_04687 [Bacillus cereus VD200]
gi|206744433|gb|EDZ55843.1| conserved hypothetical protein [Bacillus cereus H3081.97]
gi|217065440|gb|ACJ79690.1| conserved hypothetical protein [Bacillus cereus AH187]
gi|221242280|gb|ACM14990.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
cereus Q1]
gi|358355280|dbj|BAL20452.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401084353|gb|EJP92600.1| hypothetical protein IAU_03310 [Bacillus cereus IS075]
gi|401096788|gb|EJQ04826.1| hypothetical protein IC5_02348 [Bacillus cereus AND1407]
gi|401202958|gb|EJR09806.1| hypothetical protein II7_04197 [Bacillus cereus MSX-A12]
gi|401214671|gb|EJR21396.1| hypothetical protein II9_00774 [Bacillus cereus MSX-D12]
gi|401247545|gb|EJR53881.1| hypothetical protein IIK_00147 [Bacillus cereus VD102]
gi|401288871|gb|EJR94606.1| hypothetical protein IKG_04687 [Bacillus cereus VD200]
Length = 190
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD VDAT GNG+DT + ++V D G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++S+ TT EK L + L + H + ++P+ ++ FNLGYLPGGD
Sbjct: 57 AIESS------TTRLKEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E ++ P G+I +V+Y GHP G+ E +AV FA L
Sbjct: 111 KHIVTKPNSTISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|402555118|ref|YP_006596389.1| hypothetical protein BCK_11430 [Bacillus cereus FRI-35]
gi|401796328|gb|AFQ10187.1| hypothetical protein BCK_11430 [Bacillus cereus FRI-35]
Length = 190
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD VDAT GNG+DT + ++V D G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++S+ TT EK L + L + H + ++P+ ++ FNLGYLPGGD
Sbjct: 57 AIESS------TTRLKEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E ++ P G+I +V+Y GHP G+ E +AV FA L
Sbjct: 111 KHIVTKPNSTISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEKLDQKQAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|229141487|ref|ZP_04270023.1| hypothetical protein bcere0013_45810 [Bacillus cereus BDRD-ST26]
gi|229199766|ref|ZP_04326385.1| hypothetical protein bcere0001_52280 [Bacillus cereus m1293]
gi|228583706|gb|EEK41905.1| hypothetical protein bcere0001_52280 [Bacillus cereus m1293]
gi|228641972|gb|EEK98267.1| hypothetical protein bcere0013_45810 [Bacillus cereus BDRD-ST26]
Length = 177
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 14/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S+ TT EK
Sbjct: 5 VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESS------TTRLKEK 55
Query: 152 GLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T A+E
Sbjct: 56 ELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNSTISAIEQLL 115
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+ P + +
Sbjct: 116 EVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNNPPFIVAIE 175
Query: 267 R 267
+
Sbjct: 176 K 176
>gi|347522551|ref|YP_004780122.1| hypothetical protein LCGT_1945 [Lactococcus garvieae ATCC 49156]
gi|385833935|ref|YP_005871710.1| hypothetical protein [Lactococcus garvieae Lg2]
gi|343181119|dbj|BAK59458.1| conserved hypothetical protein [Lactococcus garvieae ATCC 49156]
gi|343183088|dbj|BAK61426.1| conserved hypothetical protein [Lactococcus garvieae Lg2]
Length = 179
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 96/177 (54%), Gaps = 14/177 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ GD V+DAT GNG+DT + S VY D+Q EAL ST +LL +A
Sbjct: 16 IKPGDVVIDATMGNGWDTAFL------ASLTDKVYAFDVQKEALLSTQALLQDKNLEA-- 67
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
KL H +++ V + V+ FNLGYLP DKS+IT TT AL+ + L+P
Sbjct: 68 ---KLILDGHESIDKYV--TDGVKAAIFNLGYLPRTDKSIITRPSTTLRALDILKEKLLP 122
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFKR 267
G I +VVY GH GG+ E +AV A+A L W K++ LN+ P L+ + KR
Sbjct: 123 HGQIMLVVYYGHEGGQSEKDAVLAWASGLPQAQWHVMKYEPLNQIHTPPFLICIEKR 179
>gi|300855525|ref|YP_003780509.1| rRNA methylase [Clostridium ljungdahlii DSM 13528]
gi|300435640|gb|ADK15407.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
Length = 188
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 100/179 (55%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ KGD VVDAT GNG DT ++ ++V S+G VY DIQ AL++T L K+
Sbjct: 20 LNKGDIVVDATMGNGNDTELLAELVG---SSGKVYSFDIQETALQNTKEKLMKSNVSE-- 74
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
VKL + H M++ V + LV FNLGYLP G+ SV T SETT +AL+ A ++
Sbjct: 75 -WVKLIHDGHENMDKYVKDK--INLVIFNLGYLPKGEHSVTTKSETTLVALKKALNLICK 131
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWIC---CKFQMLNRPLAPVLVFLFKR 267
G+I +VVY GH G E E +E + L+ ++ C +N P P+++ + KR
Sbjct: 132 NGIIILVVYYGHKEGTFEKEELEKYTEKLNQKEYNVINLCFTNQVNNP--PMIIAIEKR 188
>gi|311069541|ref|YP_003974464.1| RNA methylase [Bacillus atrophaeus 1942]
gi|419819801|ref|ZP_14343419.1| putative RNA methylase [Bacillus atrophaeus C89]
gi|310870058|gb|ADP33533.1| putative RNA methylase [Bacillus atrophaeus 1942]
gi|388475920|gb|EIM12625.1| putative RNA methylase [Bacillus atrophaeus C89]
Length = 194
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 102/201 (50%), Gaps = 17/201 (8%)
Query: 69 LCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL 128
L K P S L+ +AA+ KG VVDAT GNG+DTL + K+V + G VY
Sbjct: 3 LKKILPYSKELLQMAAD--------KGSIVVDATMGNGHDTLFLAKLVGEN---GHVYAF 51
Query: 129 DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPG 186
DIQ AL +T L + V LF+ H ++ E +P R+ A FNLGYLPG
Sbjct: 52 DIQESALAATRERLGEEYGPR----VTLFHKSHDKIAESLPPEADGRVAAAIFNLGYLPG 107
Query: 187 GDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246
GDKSV T +T A+E ++ GLI +VVY GH G+ E E V A+ R++
Sbjct: 108 GDKSVTTHGASTIKAIEQLLAMMKEDGLIVLVVYHGHREGKAEKEDVLAYCRNIDQQTAR 167
Query: 247 CCKFQMLNRPLAPVLVFLFKR 267
+ LN+ P + ++
Sbjct: 168 VLSYGYLNQQNDPPFIIAIEK 188
>gi|306824940|ref|ZP_07458283.1| rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|304432767|gb|EFM35740.1| rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
Length = 185
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKRVYAFDIQEQALEKTQERLD 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ A +L H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 62 Q----AGMTNAQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 115 KLCHLLVKGGRIAIMIYYGHEGGDTERDAVLDFVSQLNQQEYTAAIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|196041491|ref|ZP_03108784.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|196027739|gb|EDX66353.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
Length = 190
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNGYDT + ++V D G V+G DIQ EA++S++ L
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGYDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRL- 65
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 66 -----KEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 ISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|306829787|ref|ZP_07462976.1| rRNA methylase [Streptococcus mitis ATCC 6249]
gi|304428138|gb|EFM31229.1| rRNA methylase [Streptococcus mitis ATCC 6249]
Length = 185
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 100/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTQERLD 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ G++ +L H +++ V ++ A FNLGYLP DKSVIT +TT A
Sbjct: 62 QA------GMINAQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E + V F L+ ++ ++ LN+ P
Sbjct: 113 LEKLCHLLVKGGRIAIMIYYGHEGGDTERDVVLEFVSQLNQQEYTAAIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|374604786|ref|ZP_09677738.1| putative rRNA methylase [Paenibacillus dendritiformis C454]
gi|374389616|gb|EHQ60986.1| putative rRNA methylase [Paenibacillus dendritiformis C454]
Length = 201
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 94/182 (51%), Gaps = 7/182 (3%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
K V+ GD VDAT G G DTL + ++V G + DIQ+ AL+ T L+
Sbjct: 15 KERVQPGDRAVDATMGTGVDTLFLARLVGPR---GAIAAFDIQAAALELTRRRLEDAFGA 71
Query: 149 AEKGLVKLFNMCHSRMEEIVPKS--TAVRLVAFNLGYLP--GGDKSVITTSETTKMALEA 204
V+L H+ M +P + V FNLGYLP DK V+T TT ALE
Sbjct: 72 DGGAQVELLQHSHAAMTRALPPAWHGTTAAVMFNLGYLPTVDADKRVMTEPSTTLAALED 131
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
A +L PGG+++ VVY GH GG E +AV A+A +L ++ML RP AP ++ +
Sbjct: 132 ALTLLRPGGVLTAVVYPGHAGGDREADAVRAWAEALPAARGQAVVYRMLQRPEAPYVIAV 191
Query: 265 FK 266
K
Sbjct: 192 EK 193
>gi|315613451|ref|ZP_07888359.1| rRNA methylase [Streptococcus sanguinis ATCC 49296]
gi|315314447|gb|EFU62491.1| rRNA methylase [Streptococcus sanguinis ATCC 49296]
Length = 185
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTQERLD 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ G+ +L H + + V ++ A FNLGYLP DKSVIT +TT A
Sbjct: 62 QA------GMTNAQLILQGHETLNQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 113 LEKLCHLLVKGGRIAIMIYYGHEGGDTERDAVLEFVSQLNQQEYTAAIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|421277138|ref|ZP_15727958.1| SAM-dependent methyltransferase [Streptococcus mitis SPAR10]
gi|395876419|gb|EJG87495.1| SAM-dependent methyltransferase [Streptococcus mitis SPAR10]
Length = 185
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 100/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ TS L
Sbjct: 8 AHDFLAEVITKDDVVVDATMGNGHDTLFLGKL------AKQVYAFDIQEQALEKTSQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
E GL VKL H +++ V ++ A FNLGYLP DKS+IT TT A
Sbjct: 61 -----QESGLTNVKLLLQGHETVDQFVTEAKAA---IFNLGYLPSADKSIITKPHTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE ++L+ GG I++++Y GH GG E +AV + L ++ ++ LN+ P
Sbjct: 113 LEKLCQMLVKGGRIAIMIYYGHEGGDIERDAVMDYVSQLPQQEYTATIYRTLNQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|423548047|ref|ZP_17524405.1| hypothetical protein IGO_04482 [Bacillus cereus HuB5-5]
gi|401176714|gb|EJQ83908.1| hypothetical protein IGO_04482 [Bacillus cereus HuB5-5]
Length = 190
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD VDAT GNG+DT + ++V D G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++S+ TT EK L + L + H + ++P+ ++ FNLGYLPGGD
Sbjct: 57 AIESS------TTRLKEKELFERTVLVHDSHDTLVSVLPEDAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E ++ P G+I +V+Y GHP G+ E +AV FA L
Sbjct: 111 KHIVTKPNSTISAIEQLLDVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKHAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|423478906|ref|ZP_17455621.1| hypothetical protein IEO_04364 [Bacillus cereus BAG6X1-1]
gi|402426435|gb|EJV58559.1| hypothetical protein IEO_04364 [Bacillus cereus BAG6X1-1]
Length = 190
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 14/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S++ L EK
Sbjct: 18 VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRL------KEK 68
Query: 152 GLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
L + L + H + I+P+ ++ FNLGYLPGGDK ++T +T A+E
Sbjct: 69 KLFERTVLVHDSHDTLASILPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNSTISAIEQLL 128
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+ P + +
Sbjct: 129 EVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNNPPFIVAIE 188
Query: 267 R 267
+
Sbjct: 189 K 189
>gi|421489096|ref|ZP_15936484.1| MraW methylase-like family protein [Streptococcus oralis SK304]
gi|400368313|gb|EJP21328.1| MraW methylase-like family protein [Streptococcus oralis SK304]
Length = 185
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKRVYAFDIQEQALEKTQERLD 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ A +L H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 62 Q----AGMTNAQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 115 KLCHLLVKGGRIAIMIYYGHEGGDTERDAVLDFVSQLNQQEYTATIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|52140754|ref|YP_086075.1| SAM-dependent methyltransferase [Bacillus cereus E33L]
gi|51974223|gb|AAU15773.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
cereus E33L]
Length = 190
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD VDAT GNG+DT + +++ D G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAVDATLGNGHDTCFLAEIIGDN---GKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++S+ TT EK L + L + H + ++P+ ++ FNLGYLPGGD
Sbjct: 57 AIESS------TTRLKEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E ++ P G+I +V+Y GHP G+ E +AV FA L
Sbjct: 111 KHIVTKPNSTISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|407473887|ref|YP_006788287.1| rRNA methylase [Clostridium acidurici 9a]
gi|407050395|gb|AFS78440.1| putative rRNA methylase [Clostridium acidurici 9a]
Length = 196
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 108/190 (56%), Gaps = 9/190 (4%)
Query: 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKS 137
++I+IA + V+KG VVDAT GNG DT+ + ++V + G VYG DIQS A+K+
Sbjct: 7 SIISIAKE-IIDRTVKKGSIVVDATVGNGQDTIKLAELVGE---TGKVYGFDIQSIAIKN 62
Query: 138 TSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET 197
T L + + V+L N H +++ + K V + FNLGYLPGGD +++T ++
Sbjct: 63 TKKRL---IQENLENRVELINDGHEKIDCYISKE--VDFIIFNLGYLPGGDHTIVTRKDS 117
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
T A++ + IL P G++ + VY GH G+ E ++ + LS + KF+ +N+
Sbjct: 118 TLEAIKKSLVILKPNGIMLLAVYHGHYEGKVEKRYIDELLKELSQKKFNTLKFEFINQIN 177
Query: 258 APVLVFLFKR 267
P +++ ++
Sbjct: 178 NPPILYAIEK 187
>gi|423082764|ref|ZP_17071353.1| putative rRNA methylase [Clostridium difficile 002-P50-2011]
gi|423086942|ref|ZP_17075332.1| putative rRNA methylase [Clostridium difficile 050-P50-2011]
gi|357545525|gb|EHJ27496.1| putative rRNA methylase [Clostridium difficile 050-P50-2011]
gi|357547882|gb|EHJ29757.1| putative rRNA methylase [Clostridium difficile 002-P50-2011]
Length = 192
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 105/190 (55%), Gaps = 8/190 (4%)
Query: 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKS 137
T IT ++++ +GD V+DAT GNGYDT + + V ++ G VY DIQ EA+KS
Sbjct: 8 TKITDINKFYLENIINEGDIVIDATMGNGYDTRYLAEKVGEK---GFVYAFDIQEEAIKS 64
Query: 138 TSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET 197
T L+K + VKL H +M + + + V V FNLGYLP S+IT +T
Sbjct: 65 TRKKLEK---EGYIDRVKLIFDGHEKMNQYIKEE--VSCVLFNLGYLPRAKHSIITKPDT 119
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
T A++ + +L G+IS+ +Y GH GG+EE + + +L+ D++ + + LN+
Sbjct: 120 TLKAIKLSLEMLKENGVISIAIYTGHDGGQEEKDCIYNLVNNLNQDEFNVLESKFLNQVN 179
Query: 258 APVLVFLFKR 267
P + L ++
Sbjct: 180 NPPQLILIEK 189
>gi|333979342|ref|YP_004517287.1| rRNA methylase [Desulfotomaculum kuznetsovii DSM 6115]
gi|333822823|gb|AEG15486.1| rRNA methylase [Desulfotomaculum kuznetsovii DSM 6115]
Length = 192
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 95/175 (54%), Gaps = 21/175 (12%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST------SSLLDKTTSKAEKG 152
VDAT GNG DTL + + V + G V+ DIQ +AL+ T + LLD+
Sbjct: 27 VDATAGNGRDTLFLARGVGPQ---GKVFAFDIQIQALEKTREQLAGAGLLDR-------- 75
Query: 153 LVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212
V L H M VP AV+ V FNLGYLPGGD +IT E+T AL+AA +L G
Sbjct: 76 -VILLAADHREMAAHVPG--AVKAVMFNLGYLPGGDHRIITRPESTLEALKAALSLLASG 132
Query: 213 GLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFK 266
G IS+VVY GHPG EEL VE F R LS + + NR APV++ L K
Sbjct: 133 GRISLVVYTGHPGATEELRVVEEFTRGLSPRQYTVVRLSFWNRSSRAPVVILLEK 187
>gi|47565176|ref|ZP_00236219.1| SAM-dependent methyltransferase [Bacillus cereus G9241]
gi|47557962|gb|EAL16287.1| SAM-dependent methyltransferase [Bacillus cereus G9241]
Length = 190
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD VDAT GNG+DT + ++V D G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++S+ TT EK L + L + H + ++P+ ++ FNLGYLPGGD
Sbjct: 57 AIESS------TTRLKEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E ++ P G+I +V+Y GHP G+ E +AV FA L
Sbjct: 111 KHIVTKPNSTISAIEQLLDVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|194398444|ref|YP_002037310.1| hypothetical protein SPG_0595 [Streptococcus pneumoniae G54]
gi|419490594|ref|ZP_14030334.1| rRNA methylase [Streptococcus pneumoniae GA47179]
gi|419531899|ref|ZP_14071418.1| rRNA methylase family protein [Streptococcus pneumoniae GA47794]
gi|421274575|ref|ZP_15725407.1| rRNA methylase [Streptococcus pneumoniae GA52612]
gi|194358111|gb|ACF56559.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
gi|379594173|gb|EHZ58983.1| rRNA methylase [Streptococcus pneumoniae GA47179]
gi|379609036|gb|EHZ73778.1| rRNA methylase family protein [Streptococcus pneumoniae GA47794]
gi|395875303|gb|EJG86384.1| rRNA methylase [Streptococcus pneumoniae GA52612]
Length = 185
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +ALK T L
Sbjct: 8 AHDFLAEVVTKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQKQALKKTQERLH 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ GL +L H +++ V K+ A FNLGYLP DKSVIT +TT A
Sbjct: 62 QA------GLTNAQLILQGHETLDQFVTKTKAG---IFNLGYLPSADKSVITRPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 113 LEKLCHLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|398305786|ref|ZP_10509372.1| hypothetical protein BvalD_10085 [Bacillus vallismortis DV1-F-3]
Length = 194
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 103/201 (51%), Gaps = 17/201 (8%)
Query: 69 LCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL 128
L K P S L+ +AA +GD VVDAT GNG+DT + ++V + G VY
Sbjct: 3 LKKILPYSKELLKMAAG--------EGDIVVDATMGNGHDTQFLAELVGEN---GHVYAF 51
Query: 129 DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPG 186
DIQ A+ +T L +T + LF+ H ++ E +P T ++ A FNLGYLPG
Sbjct: 52 DIQESAVANTKERLGETY----QARTTLFHKSHDKIAESLPPETHGKVAAAVFNLGYLPG 107
Query: 187 GDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246
GDKS+ T ++T A+E ++ GL+ +VVY GHP G+ E V F RSL
Sbjct: 108 GDKSITTNGQSTIKAIEQLLSVMKDEGLMVLVVYHGHPEGKAEKNDVLDFCRSLDQQAAR 167
Query: 247 CCKFQMLNRPLAPVLVFLFKR 267
+ +N+ P + ++
Sbjct: 168 VLTYGFINQQNDPPFIVAIEK 188
>gi|423502560|ref|ZP_17479152.1| hypothetical protein IG1_00126 [Bacillus cereus HD73]
gi|449091717|ref|YP_007424158.1| hypothetical protein HD73_5059 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|402460401|gb|EJV92123.1| hypothetical protein IG1_00126 [Bacillus cereus HD73]
gi|449025474|gb|AGE80637.1| hypothetical protein HD73_5059 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 190
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD VDAT GNG+DT + ++V D +G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAVDATLGNGHDTCFLAEIVGD---SGKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++S+ TT EK L + L + H + ++P+ ++ FNLGYLPGGD
Sbjct: 57 AIESS------TTRLKEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E ++ P G+I +V Y GHP G+ E +AV FA L
Sbjct: 111 KHIVTKPNSTISAIEQLLEVMAPEGIIVLVTYHGHPEGQVERDAVLKFAEELDQKQAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|339448544|ref|ZP_08652100.1| methyltransferase (putative) [Lactobacillus fructivorans KCTC 3543]
Length = 191
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 103/185 (55%), Gaps = 14/185 (7%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K V+ GD V+D T G G+DTL + ++V + G V+ DIQ A+ +T+ +++
Sbjct: 13 LLKKTVKPGDNVIDGTAGLGHDTLFLAQLVGQK---GKVFSFDIQQSAIDATNHRINENE 69
Query: 147 SKAEKGLVKLFNMCHSRMEEIV---PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + ++ + H ++ + P S A+ FNLGYLP G+K++IT TT A+
Sbjct: 70 VQPQ---CEVIHDGHENVKRYINDQPISAAI----FNLGYLPTGNKTIITKPATTLKAVS 122
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLV 262
A L P G+I +V+Y GHPGG+EE V FA SL + K+Q +N+ P+L+
Sbjct: 123 AILNNLTPNGIIILVLYYGHPGGKEEKNQVLDFAGSLDQHQYNVLKYQFINQINDPPILI 182
Query: 263 FLFKR 267
+ KR
Sbjct: 183 AIQKR 187
>gi|331266078|ref|YP_004325708.1| hypothetical protein SOR_0705 [Streptococcus oralis Uo5]
gi|326682750|emb|CBZ00367.1| conserved hypothetical protein [Streptococcus oralis Uo5]
Length = 185
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQDKALEKTQERLD 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ A +L H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 62 Q----AGMTNAQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 115 KLCHLLVKGGRIAIMIYYGHEGGDTERDAVLDFVSQLNQQEYTATIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|421858801|ref|ZP_16291055.1| methyltransferase [Paenibacillus popilliae ATCC 14706]
gi|410831654|dbj|GAC41492.1| methyltransferase [Paenibacillus popilliae ATCC 14706]
Length = 201
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 100/193 (51%), Gaps = 8/193 (4%)
Query: 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKS 137
++++ A V K V+ GD VDAT G G DTL + ++V G V DIQ+ AL+
Sbjct: 5 SVLSFAQQAV-KERVQPGDRAVDATMGTGVDTLFLARLVGPR---GAVAAFDIQATALQL 60
Query: 138 TSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS--TAVRLVAFNLGYLP--GGDKSVIT 193
T L+ V+L H+ M +P + A V FNLGYLP DK V+T
Sbjct: 61 TRRRLEDAFGSDGSAQVELLRHSHAAMTLALPPAWQGATAAVMFNLGYLPTVDADKRVMT 120
Query: 194 TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQML 253
TT AL+ A +L PGG+++ VVY GH GG E +AV A+A ++ ++ML
Sbjct: 121 EPSTTLAALKDALTLLRPGGVLTAVVYPGHSGGDREADAVRAWAEAMPAASGQAVAYRML 180
Query: 254 NRPLAPVLVFLFK 266
RP AP + + K
Sbjct: 181 QRPEAPYAIAVEK 193
>gi|401680072|ref|ZP_10811996.1| MraW methylase-like family protein [Veillonella sp. ACP1]
gi|400219199|gb|EJO50070.1| MraW methylase-like family protein [Veillonella sp. ACP1]
Length = 191
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 99/182 (54%), Gaps = 6/182 (3%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKT 145
+W +++ VVDATCGNG+D L + A+ + C +YG+DIQ +A+ ++ LL
Sbjct: 14 IWDRIMKSASVVVDATCGNGHDLLYL----AERAQPECHLYGIDIQEQAISASRELLASK 69
Query: 146 TSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA 205
++ + L N + + + ++T + L+ FNLGYLPGGD S++T + T AL A
Sbjct: 70 KLQSNVTITFLHNSHDIALHQAIKENT-IDLIIFNLGYLPGGDHSIVTQPKNTIEALNNA 128
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
L G+I++V Y G P G EE EA+ L + C +Q +N+ P ++L
Sbjct: 129 FPKLAKDGIITIVAYPGTPEGMEEKEALHTHISQLDQAKYNVCHWQPINQANNPPELYLI 188
Query: 266 KR 267
++
Sbjct: 189 QK 190
>gi|386759625|ref|YP_006232841.1| RNA methylase [Bacillus sp. JS]
gi|384932907|gb|AFI29585.1| RNA methylase [Bacillus sp. JS]
Length = 194
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 101/203 (49%), Gaps = 17/203 (8%)
Query: 67 LPLCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVY 126
+ L K P S L+ +AA +GD VVDAT GNG+DT + ++V G VY
Sbjct: 1 MTLKKILPYSKELLKMAAG--------EGDIVVDATMGNGHDTQFLAELVGQN---GHVY 49
Query: 127 GLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYL 184
DIQ A+ +T L +T + LF+ H ++ E +P T ++ A FNLGYL
Sbjct: 50 AFDIQESAVANTQERLGETY----QARTTLFHKSHDKIAESLPPETHGKVAAAVFNLGYL 105
Query: 185 PGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDD 244
PGGDKS+ T +T A+E I+ GLI +VVY GHP G+ E V F R L
Sbjct: 106 PGGDKSITTNGSSTIKAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLEFCRDLDQQT 165
Query: 245 WICCKFQMLNRPLAPVLVFLFKR 267
+ +N+ P + ++
Sbjct: 166 ARVLTYGFINQQNDPPFIVAIEK 188
>gi|301056259|ref|YP_003794470.1| MraW methylase [Bacillus cereus biovar anthracis str. CI]
gi|300378428|gb|ADK07332.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
cereus biovar anthracis str. CI]
Length = 190
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S+
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESS----- 61
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
TT EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 62 -TTRLKEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 ISAIEQLLGVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|423470952|ref|ZP_17447696.1| hypothetical protein IEM_02258 [Bacillus cereus BAG6O-2]
gi|402433927|gb|EJV65975.1| hypothetical protein IEM_02258 [Bacillus cereus BAG6O-2]
Length = 190
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 14/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V+KGD VDAT GNG+DT + ++V D G V+G DIQ EA++S++ L EK
Sbjct: 18 VKKGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRL------KEK 68
Query: 152 GLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T A+E
Sbjct: 69 ELFERTVLVHDSHDTLVSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNSTISAIEQLL 128
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+ P + +
Sbjct: 129 ELMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNNPPFIVAIE 188
Query: 267 R 267
+
Sbjct: 189 K 189
>gi|229152949|ref|ZP_04281131.1| hypothetical protein bcere0011_44810 [Bacillus cereus m1550]
gi|228630562|gb|EEK87209.1| hypothetical protein bcere0011_44810 [Bacillus cereus m1550]
Length = 177
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 98/181 (54%), Gaps = 14/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V++GD VDAT GNG+DT + ++V + G V+G DIQ EA++S+ TT EK
Sbjct: 5 VKEGDYAVDATLGNGHDTCFLAEIVGNN---GKVFGFDIQKEAIESS------TTRLKEK 55
Query: 152 GLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
L + L + H + I+P ++ FNLGYLPGGDK ++T +T A+E
Sbjct: 56 KLFERTVLVHDSHDTLLSILPGDAKGKVTGAIFNLGYLPGGDKHIVTKPNSTISAIEQLL 115
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
++ P G+I +V+Y GHP GR E +AV FA L ++ +N+ P + +
Sbjct: 116 DVMAPEGIIVLVIYHGHPEGRVERDAVLKFAEELDQKQAHVLRYGFINQQNNPPFIVAIE 175
Query: 267 R 267
+
Sbjct: 176 K 176
>gi|419781899|ref|ZP_14307711.1| putative rRNA methylase [Streptococcus oralis SK610]
gi|383183791|gb|EIC76325.1| putative rRNA methylase [Streptococcus oralis SK610]
Length = 185
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQDKALEKTQERLD 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ A +L H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 62 Q----AGMTNAQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 115 KLCHLLVKGGRIAIMIYYGHEGGDTERDAVLDFVCQLNQQEYTATIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ +R
Sbjct: 175 MIER 178
>gi|15834837|ref|NP_296596.1| hypothetical protein TC0217 [Chlamydia muridarum Nigg]
gi|270285003|ref|ZP_06194397.1| hypothetical protein CmurN_01083 [Chlamydia muridarum Nigg]
gi|270289026|ref|ZP_06195328.1| hypothetical protein CmurW_01138 [Chlamydia muridarum Weiss]
gi|301336401|ref|ZP_07224603.1| hypothetical protein CmurM_01160 [Chlamydia muridarum MopnTet14]
gi|7190256|gb|AAF39089.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
Length = 194
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 9/184 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ +++ VV+ GD +VDATCGNG D L + +++ G + DIQ EAL + +
Sbjct: 17 SHAIFQQVVKPGDVIVDATCGNGKDALFLAQLL---QGKGRLVVYDIQQEALDRAKNHFE 73
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
E+ ++++ H ++E +L +NLGYLP GDK + T +T +++
Sbjct: 74 NHLLIEERRIIEMKLCSHEYIQE-----EGAKLFHYNLGYLPNGDKQITTCRASTIASIQ 128
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
A ++ P G++S+V Y GH G EEL V+ A +L W C +NR AP L F
Sbjct: 129 KALELVSPSGVVSIVCYPGHEEGAEELLCVDQLAVNLDPSKWEVCTHYSVNRKKAPRL-F 187
Query: 264 LFKR 267
LF++
Sbjct: 188 LFRK 191
>gi|358464492|ref|ZP_09174456.1| putative rRNA methylase [Streptococcus sp. oral taxon 058 str.
F0407]
gi|357066892|gb|EHI77025.1| putative rRNA methylase [Streptococcus sp. oral taxon 058 str.
F0407]
Length = 185
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 101/186 (54%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL T L+
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALVKTQDRLN 61
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
E GL V+L H +++ V ++ A FNLGYLP DKSVIT +TT A
Sbjct: 62 ------EAGLENVQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITRPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
L+ +IL+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 113 LDKLCQILVKGGRIAIMIYYGHEGGDIERDAVLDFVSQLNQQEYTAAIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|423591267|ref|ZP_17567298.1| hypothetical protein IIG_00135 [Bacillus cereus VD048]
gi|401233414|gb|EJR39907.1| hypothetical protein IIG_00135 [Bacillus cereus VD048]
Length = 190
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D G V+G DIQ +A++S++ L
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKDAIESSTIRL- 65
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
EK L + L + H + ++PK ++ FNLGYLPGGDK ++T +T
Sbjct: 66 -----KEKELFERTVLVHDSHDTLLSVLPKDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L + ++ +N+
Sbjct: 121 ISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKEAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|416350441|ref|ZP_11680876.1| putative rRNA methylase [Clostridium botulinum C str. Stockholm]
gi|338196280|gb|EGO88483.1| putative rRNA methylase [Clostridium botulinum C str. Stockholm]
Length = 189
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 103/177 (58%), Gaps = 9/177 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++GD VDAT GNG DT+ + ++V D +G VY D+Q EA+ +T K K
Sbjct: 21 LQEGDMAVDATMGNGNDTVFLAELVGD---SGTVYSFDVQKEAIDNTRK---KIIDNKIK 74
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
++L + H +++ + K V+LV FNLGYLP + + T S+TT +A++ + ++
Sbjct: 75 TNIQLIHDGHENIDKYINKD--VKLVMFNLGYLPKAEHKITTKSDTTLIAIKKSLNLIHK 132
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFKR 267
G++ +V+Y GH G+ E AVE FA +L+ ++ K + +N+ P+L+ + KR
Sbjct: 133 NGVVLVVIYHGHENGKLEKVAVEEFASTLNQKEYNVMKLKFINQVNNPPILIAIEKR 189
>gi|171915273|ref|ZP_02930743.1| YtqB [Verrucomicrobium spinosum DSM 4136]
Length = 206
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 99/188 (52%), Gaps = 13/188 (6%)
Query: 88 WKHVVRK-----GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142
W H + + GD VVDAT GNG+DTL + + V E G V+ DIQ++A++ T L
Sbjct: 18 WVHAILEPRLLPGDLVVDATAGNGHDTLFLAQRVLPE---GQVFAFDIQADAIQQTEIRL 74
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKM 200
+ + + + L H + +P +RL FNLGYLPGGDK+ IT ETT
Sbjct: 75 RE--AGVDMSRITLHVAGHETLSAALPTGVHQRLRLCMFNLGYLPGGDKARITQVETTLS 132
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAP 259
A++ A +L GL+++VVY GH GG +E V A + S D W + LN RP P
Sbjct: 133 AIQQAMDLLEEDGLLTVVVYPGHDGGMQEAGRVTAMLEAASPDTWEVQRIGYLNFRPTTP 192
Query: 260 VLVFLFKR 267
+ +R
Sbjct: 193 FCLVARRR 200
>gi|325263526|ref|ZP_08130260.1| putative rRNA methylase [Clostridium sp. D5]
gi|324031235|gb|EGB92516.1| putative rRNA methylase [Clostridium sp. D5]
Length = 188
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 95/176 (53%), Gaps = 9/176 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ GD VDAT GNG DT + ++ S G VY DIQ EAL T+ ++K +
Sbjct: 19 IEPGDVCVDATAGNGNDTEFLCRLAG---STGKVYAFDIQQEALAHTAERIEKLGFGSR- 74
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+L H +M E V + V + FN GYLPGGD ++ T +ET+ +A+E ++L P
Sbjct: 75 --ARLIQDGHEKMGEYVKED--VSAIVFNFGYLPGGDHNISTKAETSILAIEEGMKLLKP 130
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFLFK 266
G+IS+ +Y G G EE EAV ++ +++ W+ Q NR P+ VFL +
Sbjct: 131 DGVISLCIYSGRDSGYEEKEAVLSYLKAVDPRKWLVIVNQFYNRQNDPPIPVFLVR 186
>gi|52081533|ref|YP_080324.1| hypothetical protein BL00061 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319647443|ref|ZP_08001664.1| YtqB protein [Bacillus sp. BT1B_CT2]
gi|423683519|ref|ZP_17658358.1| hypothetical protein MUY_03372 [Bacillus licheniformis WX-02]
gi|52004744|gb|AAU24686.1| conserved protein YtqB [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317390489|gb|EFV71295.1| YtqB protein [Bacillus sp. BT1B_CT2]
gi|383440293|gb|EID48068.1| hypothetical protein MUY_03372 [Bacillus licheniformis WX-02]
Length = 194
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 99/186 (53%), Gaps = 9/186 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + K +GD V+DAT GNG+DT + ++V + +G VY DIQ AL +T+ L
Sbjct: 10 AKELLKTAAGEGDIVIDATMGNGHDTHFLAELVGE---SGHVYAFDIQEAALMNTAERL- 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMA 201
K V L H + +P + ++ A FNLGYLPGGDKSV T S++T +
Sbjct: 66 ---GNEYKDRVTLIQKSHDELTTSLPDDISGKVAAAVFNLGYLPGGDKSVTTKSDSTIAS 122
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
++ +IL GLI +VVY GHP G+ E +A+ F SL D +Q LN+ P
Sbjct: 123 IKQLLKILKNEGLIVLVVYHGHPEGKREKDALLEFCASLDQDTARVLCYQYLNQRNDPPF 182
Query: 262 VFLFKR 267
+ ++
Sbjct: 183 IIAIEK 188
>gi|423489922|ref|ZP_17466604.1| hypothetical protein IEU_04545 [Bacillus cereus BtB2-4]
gi|423495645|ref|ZP_17472289.1| hypothetical protein IEW_04543 [Bacillus cereus CER057]
gi|423497560|ref|ZP_17474177.1| hypothetical protein IEY_00787 [Bacillus cereus CER074]
gi|401150138|gb|EJQ57601.1| hypothetical protein IEW_04543 [Bacillus cereus CER057]
gi|401162491|gb|EJQ69847.1| hypothetical protein IEY_00787 [Bacillus cereus CER074]
gi|402430241|gb|EJV62319.1| hypothetical protein IEU_04545 [Bacillus cereus BtB2-4]
Length = 190
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S++ L
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRL- 65
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 66 -----KEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L + ++ +N+
Sbjct: 121 ISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKEAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|322391712|ref|ZP_08065179.1| rRNA methylase [Streptococcus peroris ATCC 700780]
gi|321145422|gb|EFX40816.1| rRNA methylase [Streptococcus peroris ATCC 700780]
Length = 185
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ ++ K D VVDAT GNGYDTL + ++ A VY DIQ +AL+ TS L
Sbjct: 8 AHDFLAEIINKEDIVVDATMGNGYDTLFLARL------AKQVYAFDIQEQALEKTSQRLQ 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
E GL +L H +++ V + V+ FNLGYLP DK++IT +TT A
Sbjct: 62 ------EAGLTNAELILQGHETVDQFVGE---VKAAIFNLGYLPSADKNIITKPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE R LI GG I++++Y GH GG E +AV F L ++ ++ LN+ P
Sbjct: 113 LEKLCRKLIKGGRIAIMIYYGHEGGDIERDAVMDFVSQLPQQEYTATIYRTLNQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|335039096|ref|ZP_08532281.1| rRNA methylase [Caldalkalibacillus thermarum TA2.A1]
gi|334181023|gb|EGL83603.1| rRNA methylase [Caldalkalibacillus thermarum TA2.A1]
Length = 190
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 102/185 (55%), Gaps = 16/185 (8%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ GD VVDAT GNG+DTL + ++V + G V D+Q EA+ T L +
Sbjct: 16 EQTVQPGDLVVDATMGNGHDTLFLARLVGPK---GKVLAYDVQQEAIDKTKKRLKEAHCL 72
Query: 149 AEKGLVKLFNMCHSRMEEIV-----PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++ V+L + H +EE + P S A+ FNLGYLPG DK+V+T ETT AL
Sbjct: 73 SQ---VQLLHKGHETVEEELQYYGQPLSAAM----FNLGYLPGSDKTVVTQPETTLAALG 125
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLV 262
R L PGGLI++VVY GH GG+ E +A+ A + +++ +N+ P LV
Sbjct: 126 VLARYLKPGGLITIVVYSGHAGGKTERDALLAELGQWDQKQYHVLQYRFINQQNDPPFLV 185
Query: 263 FLFKR 267
+ KR
Sbjct: 186 AIEKR 190
>gi|325841279|ref|ZP_08167380.1| putative rRNA methylase [Turicibacter sp. HGF1]
gi|325489960|gb|EGC92307.1| putative rRNA methylase [Turicibacter sp. HGF1]
Length = 187
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 9/176 (5%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
+V G+TV+DAT GNGYDTL + K+V + +G V+ D+Q EA+ ST + L++ +K E
Sbjct: 19 IVSSGETVIDATAGNGYDTLFLAKLVGE---SGKVFSFDVQQEAIDSTKAKLEE--AKLE 73
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V L H + V + + + FNLGYLPG D+S+ TT ETT A+ +L
Sbjct: 74 N--VSLILDGHQHVLNYVTEEISAAI--FNLGYLPGSDQSITTTGETTWKAVTDMLSLLK 129
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
GLI +V+Y GH G+ E +E +L ++Q +NRP AP +V + K
Sbjct: 130 KNGLIILVIYHGHEEGKVERHFLEDCLATLDSGTTQVLQYQFVNRPTAPFIVAIEK 185
>gi|149181473|ref|ZP_01859969.1| SAM-dependent methyltransferase, MraW methylase family protein
[Bacillus sp. SG-1]
gi|148850874|gb|EDL65028.1| SAM-dependent methyltransferase, MraW methylase family protein
[Bacillus sp. SG-1]
Length = 190
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 100/181 (55%), Gaps = 13/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V GD +DAT GNG+DTL + ++V + G VYG DIQ EAL +T L +T + E+
Sbjct: 18 VNPGDIAIDATLGNGHDTLFLAQLVGEN---GRVYGFDIQEEALFNTRERL-QTHNLQER 73
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V LF H + +VP ++ FNLGYLPGGDK+++T +TT A+EA ++
Sbjct: 74 --VTLFKQGHETVGNVVPPVHYGKVTGAIFNLGYLPGGDKTIVTRPDTTLKAIEALLDMM 131
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQML---NRPLAPVLVFLFK 266
P G+I +V+Y GH G E + + + L + ++Q + N P P +V L K
Sbjct: 132 APEGIIVLVIYHGHREGAVERDYILRYVERLDQNYVHVLRYQFMNGINNP--PFIVALEK 189
Query: 267 R 267
R
Sbjct: 190 R 190
>gi|357038607|ref|ZP_09100404.1| rRNA methylase [Desulfotomaculum gibsoniae DSM 7213]
gi|355359399|gb|EHG07161.1| rRNA methylase [Desulfotomaculum gibsoniae DSM 7213]
Length = 205
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+ KG VDAT GNGYDTL + V + G VY DIQ AL T+ L + +
Sbjct: 27 VLHKGSVAVDATAGNGYDTLFLANSVGE---CGRVYAFDIQQSALDITARRLKQFGLEKN 83
Query: 151 KGLVKLFNMCHSRME-EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V L + H +M+ IVP A FNLGYLPGGD IT TT AL+ A +L
Sbjct: 84 ---VTLIHDGHEKMDLYIVPPVDAF---IFNLGYLPGGDHDKITRPSTTVKALQIALDML 137
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFL 264
PGG IS+VVY GH G EE VE A L + K +NR AP L+F+
Sbjct: 138 NPGGRISIVVYTGHLGAGEESRTVEEMAAKLDPRIFGVLKVTFINRSASAPFLIFI 193
>gi|423670320|ref|ZP_17645349.1| hypothetical protein IKO_04017 [Bacillus cereus VDM034]
gi|423673472|ref|ZP_17648411.1| hypothetical protein IKS_01015 [Bacillus cereus VDM062]
gi|401297259|gb|EJS02871.1| hypothetical protein IKO_04017 [Bacillus cereus VDM034]
gi|401310653|gb|EJS15966.1| hypothetical protein IKS_01015 [Bacillus cereus VDM062]
Length = 190
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 101/189 (53%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S+
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQQEAIESS----- 61
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
T EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 62 -TIHLKEKELFERTVLVHDSHDTLLSVLPEEAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 ISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|322387483|ref|ZP_08061093.1| rRNA methylase [Streptococcus infantis ATCC 700779]
gi|419842693|ref|ZP_14366030.1| putative rRNA methylase [Streptococcus infantis ATCC 700779]
gi|321142012|gb|EFX37507.1| rRNA methylase [Streptococcus infantis ATCC 700779]
gi|385703638|gb|EIG40751.1| putative rRNA methylase [Streptococcus infantis ATCC 700779]
Length = 185
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ TS +
Sbjct: 8 AHDFLAQVITKDDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALQKTSKRI- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
E GL V L H +++ V T V+ FNLGYLP DKS+IT +TT A
Sbjct: 61 -----QEAGLTNVDLILQGHETVDQFV---TEVKAAIFNLGYLPSADKSIITQPQTTLEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E +AV + L ++ ++ LN+ P
Sbjct: 113 LEKLCLMLVKGGRIAIMIYYGHEGGDIERDAVLDYVSQLPQQEYTATIYRTLNQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|172058288|ref|YP_001814748.1| putative rRNA methylase [Exiguobacterium sibiricum 255-15]
gi|171990809|gb|ACB61731.1| putative rRNA methylase [Exiguobacterium sibiricum 255-15]
Length = 196
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 94/178 (52%), Gaps = 7/178 (3%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+ +GD VVD T GNG+DT + + V +G V D+Q +A++ T+ L
Sbjct: 17 VIHEGDCVVDMTAGNGHDTHFLAEQVG---PSGRVIAFDVQEQAIEETTRRLQAAHVF-- 71
Query: 151 KGLVKLFNMCHSRM-EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V L++ H + + + +R FNLGYLPG DKSV TT E T AL A +L
Sbjct: 72 -DWVDLYHESHIHVGARLFAEQRPIRAGVFNLGYLPGSDKSVTTTGEETLEALRALLPVL 130
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+PGGL+ +V+Y GH GR E +AV SL D+ +++ LN+ P + ++
Sbjct: 131 VPGGLVVLVIYHGHSEGRRERDAVLEHVSSLPQQDYAVLQYRFLNQQNNPPFIVAIEK 188
>gi|339640907|ref|ZP_08662351.1| MraW methylase-like family protein [Streptococcus sp. oral taxon
056 str. F0418]
gi|339454176|gb|EGP66791.1| MraW methylase-like family protein [Streptococcus sp. oral taxon
056 str. F0418]
Length = 181
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 98/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K DTVVDAT GNG+DTL + KM A VY DIQ +AL+ T L
Sbjct: 8 AHDFLAEVVTKEDTVVDATMGNGHDTLFLAKM------AKQVYAFDIQEQALEKTRQRL- 60
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++A+ V+L H +++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 61 ---AEADLDNVQLILAGHETLDQYTDHFKAA---IFNLGYLPSADKSVITRPDTTLEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+ GG +++++Y GH GG E +AV F L D+ ++ +N+ P +
Sbjct: 115 KVCQGLVKGGRVAIMIYYGHAGGEVEKDAVLDFVSQLPQQDFTVALYKTINQINNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|423484324|ref|ZP_17461014.1| hypothetical protein IEQ_04102 [Bacillus cereus BAG6X1-2]
gi|401138484|gb|EJQ46052.1| hypothetical protein IEQ_04102 [Bacillus cereus BAG6X1-2]
Length = 190
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD VDAT GNG+DT + ++V D G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++S++ L EK L + L + H + ++P+ ++ FNLGYLPGGD
Sbjct: 57 AIESSTIRL------KEKDLFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E ++ P G+I +V+Y GHP G+ E +AV FA L
Sbjct: 111 KHIVTKPNSTLSAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|423368773|ref|ZP_17346205.1| hypothetical protein IC3_03874 [Bacillus cereus VD142]
gi|401079713|gb|EJP88008.1| hypothetical protein IC3_03874 [Bacillus cereus VD142]
Length = 190
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S++ L
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRL- 65
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 66 -----KEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 IYAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|429759444|ref|ZP_19291943.1| putative rRNA methylase [Veillonella atypica KON]
gi|429179720|gb|EKY20959.1| putative rRNA methylase [Veillonella atypica KON]
Length = 191
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 99/182 (54%), Gaps = 6/182 (3%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKT 145
+W +++ VVDATCGNG+D L + A+ + + C +YG+DIQ +A+ ++ LL
Sbjct: 14 IWDRIMKSASVVVDATCGNGHDLLYL----AERAQSECHLYGIDIQEQAVSASRELLASK 69
Query: 146 TSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA 205
++ + L N + + + ++T + L+ FNLGYLPGGD S+IT T AL A
Sbjct: 70 KLQSNVTITFLHNSHDIALHQEIKENT-IDLIIFNLGYLPGGDHSIITRPHNTIEALNNA 128
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
L G+I++V Y G P G EE EA+ + L + C + +N+ P ++L
Sbjct: 129 FPKLAKDGIITIVAYPGTPEGMEEKEALHKYISQLDQAKYNVCHWHPINQANNPPELYLI 188
Query: 266 KR 267
++
Sbjct: 189 QK 190
>gi|423614799|ref|ZP_17590633.1| hypothetical protein IIO_00125 [Bacillus cereus VD115]
gi|401262455|gb|EJR68597.1| hypothetical protein IIO_00125 [Bacillus cereus VD115]
Length = 190
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S++ L
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRL- 65
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 66 -----KEKKLFERTVLVHDSHDTLVSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 ISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLQYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|293374332|ref|ZP_06620659.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|292646995|gb|EFF64978.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
Length = 187
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 9/176 (5%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
+V G+TV+DAT GNGYDTL + K+V + +G V+ D+Q EA+ ST + L++ +K E
Sbjct: 19 IVSAGETVIDATAGNGYDTLFLAKLVGE---SGKVFSFDVQQEAIDSTKAKLEE--AKLE 73
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V L H + V + + + FNLGYLPG D+S+ TT ETT A+ +L
Sbjct: 74 N--VSLILDGHQHVLNYVTEEISAAI--FNLGYLPGSDQSITTTGETTWKAVTDMLSLLK 129
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
GLI +V+Y GH G+ E +E +L ++Q +NRP AP +V + K
Sbjct: 130 KNGLIILVIYHGHEEGKVERHFLEDCLATLDSGTTQVLQYQFVNRPTAPFIVAIEK 185
>gi|414158757|ref|ZP_11415050.1| hypothetical protein HMPREF9188_01324 [Streptococcus sp. F0441]
gi|410869412|gb|EKS17374.1| hypothetical protein HMPREF9188_01324 [Streptococcus sp. F0441]
Length = 185
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 98/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTQERLD 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ +L H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 62 QAGMTN----AQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 115 KLCHLLVKGGRIAIMIYYGHEGGDIERDAVLDFVSQLNQQEFTVVIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|417936170|ref|ZP_12579487.1| MraW methylase-like family protein [Streptococcus infantis X]
gi|343403079|gb|EGV15584.1| MraW methylase-like family protein [Streptococcus infantis X]
Length = 185
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ TS L
Sbjct: 8 AHDFLAQVITKDDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTSQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
E GL V+L H +++ V T V+ FNLGYLP DKS+IT TT A
Sbjct: 61 -----QESGLTNVELLLQGHETVDQFV---TEVKAAIFNLGYLPTADKSIITKPHTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE ++L+ G I++++Y GH GG E +AV + L ++ ++ LN+ P
Sbjct: 113 LEKLCQMLVKSGRIAIMIYYGHEGGDIERDAVMDYVSQLPQQEYTATIYRTLNQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|404494035|ref|YP_006718141.1| rRNA methyltransferase [Pelobacter carbinolicus DSM 2380]
gi|77546058|gb|ABA89620.1| rRNA methyltransferase, putative [Pelobacter carbinolicus DSM 2380]
Length = 232
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 94/196 (47%), Gaps = 21/196 (10%)
Query: 88 WKH-----VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142
W H V+ G VD T GNG+DTL + V E G V D+QS+AL +TS L
Sbjct: 38 WAHLLLEPVLIPGGLAVDLTAGNGHDTLFLWSRVGAE---GQVLAFDVQSQALLNTSRRL 94
Query: 143 DKTTSKAEK-----------GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSV 191
+ + + G V L CHS + +++ V NLGYLPGGD V
Sbjct: 95 SEAGATVQGVDPGQPVQLHGGGVFLLQACHSYLTQLLDAHPMA--VMANLGYLPGGDHGV 152
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
IT ETT AL +A +L GG + + Y GH GG EE AV F SL W+ F
Sbjct: 153 ITHRETTLKALHSAAELLAVGGRLVVTAYPGHAGGAEESRAVLDFFASLDARQWLVLNFC 212
Query: 252 MLNRPLAPVLVFLFKR 267
NR AP+L+ KR
Sbjct: 213 STNRLQAPLLLVAEKR 228
>gi|384182564|ref|YP_005568326.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324328648|gb|ADY23908.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 190
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V + G V+G DIQ EA++S+
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGEN---GKVFGFDIQKEAIESS----- 61
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
TT EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 62 -TTRLKEKELFERTILVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 ISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|281417413|ref|ZP_06248433.1| putative rRNA methylase [Clostridium thermocellum JW20]
gi|281408815|gb|EFB39073.1| putative rRNA methylase [Clostridium thermocellum JW20]
Length = 188
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 96/177 (54%), Gaps = 20/177 (11%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS------SLL 142
K V++GDTVVDATCGNG DT + +V + G V+G DIQ +A+ +T+ +L+
Sbjct: 16 KMFVKEGDTVVDATCGNGNDTAFLASLVGEN---GRVFGFDIQDKAIANTTKKLTDLNLI 72
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL 202
D+ T L H M++ + V+ V FNLGYLP GD S+ T ETT AL
Sbjct: 73 DRVT---------LIKDGHQNMDKYI--DCPVKAVMFNLGYLPSGDHSISTRPETTIQAL 121
Query: 203 EAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
A +L+ GG+I++V+Y G G EE E V F + + +I + +N+ P
Sbjct: 122 SKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGMDQKKFIVQRTDFINQANCP 178
>gi|442564243|ref|YP_006714519.2| rRNA methylase YtqB [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|440611557|gb|AAU42048.3| putative rRNA methylase YtqB [Bacillus licheniformis DSM 13 = ATCC
14580]
Length = 225
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 99/186 (53%), Gaps = 9/186 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + K +GD V+DAT GNG+DT + ++V + +G VY DIQ AL +T+ L
Sbjct: 41 AKELLKTAAGEGDIVIDATMGNGHDTHFLAELVGE---SGHVYAFDIQEAALMNTAERL- 96
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMA 201
K V L H + +P + ++ A FNLGYLPGGDKSV T S++T +
Sbjct: 97 ---GNEYKDRVTLIQKSHDELTTSLPDDISGKVAAAVFNLGYLPGGDKSVTTKSDSTIAS 153
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
++ +IL GLI +VVY GHP G+ E +A+ F SL D +Q LN+ P
Sbjct: 154 IKQLLKILKNEGLIVLVVYHGHPEGKREKDALLEFCASLDQDTARVLCYQYLNQRNDPPF 213
Query: 262 VFLFKR 267
+ ++
Sbjct: 214 IIAIEK 219
>gi|118479881|ref|YP_897032.1| SAM-dependent methyltransferase [Bacillus thuringiensis str. Al
Hakam]
gi|196043789|ref|ZP_03111026.1| conserved hypothetical protein [Bacillus cereus 03BB108]
gi|225866741|ref|YP_002752119.1| hypothetical protein BCA_4875 [Bacillus cereus 03BB102]
gi|376268687|ref|YP_005121399.1| MraW methylase family SAM-dependent methyltransferase [Bacillus
cereus F837/76]
gi|118419106|gb|ABK87525.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
thuringiensis str. Al Hakam]
gi|196025125|gb|EDX63795.1| conserved hypothetical protein [Bacillus cereus 03BB108]
gi|225787347|gb|ACO27564.1| conserved hypothetical protein [Bacillus cereus 03BB102]
gi|364514487|gb|AEW57886.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
cereus F837/76]
Length = 190
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V + G V+G DIQ EA++S+
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGNN---GKVFGFDIQKEAIESS----- 61
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
TT EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 62 -TTRLKEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 ISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|423394980|ref|ZP_17372181.1| hypothetical protein ICU_00674 [Bacillus cereus BAG2X1-1]
gi|423405842|ref|ZP_17382991.1| hypothetical protein ICY_00527 [Bacillus cereus BAG2X1-3]
gi|401656114|gb|EJS73638.1| hypothetical protein ICU_00674 [Bacillus cereus BAG2X1-1]
gi|401660763|gb|EJS78238.1| hypothetical protein ICY_00527 [Bacillus cereus BAG2X1-3]
Length = 190
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 101/189 (53%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S++ L
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRL- 65
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
EK L L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 66 -----KEKDLFNRAVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 LSAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|152977113|ref|YP_001376630.1| putative rRNA methylase [Bacillus cytotoxicus NVH 391-98]
gi|152025865|gb|ABS23635.1| putative rRNA methylase [Bacillus cytotoxicus NVH 391-98]
Length = 190
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD VDAT GNG+D + ++V + G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAVDATLGNGHDACFLAEIVGEN---GKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++++++ L EKGL + + H + ++P ++ FNLGYLPGGD
Sbjct: 57 AIENSTARL------KEKGLEERTVFIHDSHDTLLSVLPAEAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E I+ P G+I +V+Y GHP G+ E +AV FA SL
Sbjct: 111 KHIVTKPNSTIAAIEQLLEIMAPEGIIVLVIYHGHPEGKIERDAVLQFAESLDQKQAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|406988538|gb|EKE08506.1| hypothetical protein ACD_17C00133G0004 [uncultured bacterium]
Length = 179
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 102/180 (56%), Gaps = 15/180 (8%)
Query: 88 WKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS 147
WK ++ D +DATCGNG+DTL + S V LDIQ A+++T +LL
Sbjct: 11 WKTLLHPSDLAIDATCGNGHDTLFL-------SELSSVISLDIQEAAIRNTEALLASKGK 63
Query: 148 KAEKGLVKLFNMCHSRMEEI-VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
KA L+ + H+ ++ + +P S RL+ +NLGYLPGGDKS+ T TT +++E A+
Sbjct: 64 KA-----TLYRLNHADIDSLSLPHSP--RLIVYNLGYLPGGDKSLTTLLGTTLISVEKAK 116
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
+L G +S+ Y GH G E +A+ +A LS +W C + +NR AP ++++ K
Sbjct: 117 TMLAEDGALSITCYPGHKEGAIEEKALCNWAEKLSYKEWRVCHHRWINRTNAPSILWIEK 176
>gi|423400390|ref|ZP_17377563.1| hypothetical protein ICW_00788 [Bacillus cereus BAG2X1-2]
gi|401655747|gb|EJS73276.1| hypothetical protein ICW_00788 [Bacillus cereus BAG2X1-2]
Length = 190
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 98/181 (54%), Gaps = 14/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S++ L EK
Sbjct: 18 VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRL------KEK 68
Query: 152 GLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
L + L + H + I+P+ ++ FNLGYLPGGDK ++T +T A+E
Sbjct: 69 KLFERTVLVHDSHDTLASILPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNSTISAIEQLL 128
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
+ P G+I +V+Y GHP G+ E +AV FA L ++ +N+ P + +
Sbjct: 129 EAMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNNPPFIVAIE 188
Query: 267 R 267
+
Sbjct: 189 K 189
>gi|423612936|ref|ZP_17588797.1| hypothetical protein IIM_03651 [Bacillus cereus VD107]
gi|401243640|gb|EJR50008.1| hypothetical protein IIM_03651 [Bacillus cereus VD107]
Length = 190
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD VDAT GNG+DT + ++V D G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++S++ L EK L + L + H + ++P+ ++ FNLGYLPGGD
Sbjct: 57 AIESSTIRL------KEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E ++ P G+I +V+Y GHP G+ E +AV FA L
Sbjct: 111 KHIVTKPNSTISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|387930184|ref|ZP_10132861.1| sam-dependent methyltransferase, mraw methylase family protein
[Bacillus methanolicus PB1]
gi|387587002|gb|EIJ79326.1| sam-dependent methyltransferase, mraw methylase family protein
[Bacillus methanolicus PB1]
Length = 190
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V GD VDAT GNG+DTL + +V G VYG DIQ EAL ++ L
Sbjct: 10 ARTLLQKAVSPGDIAVDATLGNGHDTLFLANLVGQN---GRVYGFDIQEEALAASKQRL- 65
Query: 144 KTTSKAEKGL---VKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
AE L V F+ H + E +P + FNLGYLPGGDKS+IT +TT
Sbjct: 66 -----AEHNLIDRVTFFHKGHEHILESIPPVHYGNITGAIFNLGYLPGGDKSIITRPKTT 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E I+ P G+I +V+Y GHP G E + + + L + +++ +N+
Sbjct: 121 ITAIEQLLEIMAPEGIIVLVIYHGHPEGAVERDYLLRYVEKLDQNAVHVLQYRFINQKNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIIAIEK 189
>gi|333984275|ref|YP_004513485.1| rRNA methylase [Methylomonas methanica MC09]
gi|333808316|gb|AEG00986.1| rRNA methylase [Methylomonas methanica MC09]
Length = 191
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 109/193 (56%), Gaps = 11/193 (5%)
Query: 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKS 137
+L IA + + + ++ GD VVDAT GNG+DT+ + + V G V+G D+Q +A++
Sbjct: 5 SLAEIAHDTIGQ-TLQSGDIVVDATVGNGHDTVFLAENVG---RGGKVFGFDVQPQAIQV 60
Query: 138 TSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTS 195
T + + A V LF+ H+ M + +P+ ++ + FNLGYLPG DKSVIT +
Sbjct: 61 TRQRIRQLGLDAR---VTLFHASHADMAQHIPQQFHGCIQAIMFNLGYLPGADKSVITQT 117
Query: 196 ETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDW-ICCKFQMLN 254
++T A+ AA R+L G+I++ Y GH GG EE + + + L D+ + F +
Sbjct: 118 QSTLQAVGAACRLLGAQGVITVTAYPGHAGGDEETHYLTHWLQQLDSADYSVETVFSQHH 177
Query: 255 RPLAPVLVFLFKR 267
+ AP L F+ K+
Sbjct: 178 QAHAPRL-FVIKK 189
>gi|116513225|ref|YP_812132.1| hypothetical protein LACR_2602 [Lactococcus lactis subsp. cremoris
SK11]
gi|116108879|gb|ABJ74019.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. cremoris
SK11]
Length = 211
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 31/209 (14%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + K ++ D VVDAT GNGYDTL + ++ A VY D+Q AL++T L+
Sbjct: 8 AHWMLKDIINVDDVVVDATMGNGYDTLFLAELGAK------VYAFDVQEAALEATEKRLE 61
Query: 144 ---------KTTSKAEKGLVKL----FN----------MCHSRMEEIVPK-STAVRLVAF 179
KT S ++ + L FN + + EE++ + V+ F
Sbjct: 62 NKAIKTQIMKTASPVDQSTLSLKEQTFNEVSMTEPSVDLILAGHEELINYVQSPVKAAIF 121
Query: 180 NLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARS 239
NLGYLP DK+++T +ETT AL + +L+ GG I++V+Y GH GG EE AV +A +
Sbjct: 122 NLGYLPKTDKNIVTRAETTLSALSSLTDLLVVGGRIALVIYYGHEGGEEEKNAVINWAST 181
Query: 240 LSVDDWICCKFQMLNR-PLAPVLVFLFKR 267
L DW + LN+ P+LV + KR
Sbjct: 182 LPQKDWEVTSYAPLNQIHTPPILVLIEKR 210
>gi|309800616|ref|ZP_07694760.1| rRNA methylase [Streptococcus infantis SK1302]
gi|308115762|gb|EFO53294.1| rRNA methylase [Streptococcus infantis SK1302]
Length = 185
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 101/184 (54%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ + D VVDAT GNG+DTL + K+ A VY DIQ +AL+ TS L
Sbjct: 8 AHDFLAQVITQEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTSQRL- 60
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+A+ V+L H +++ V + V+ FNLGYLP DKS+IT +TT AL+
Sbjct: 61 ---QEADLTNVELILQGHETVDQFVRE---VKAAIFNLGYLPSADKSIITQPQTTIEALD 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L +++ ++ LN+ P +
Sbjct: 115 KLCHMLVKGGRIAIMIYYGHEGGDIERDAVMDFVSHLPQEEYTAAIYRTLNQINNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|203282572|pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
gi|203282573|pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
gi|203282574|pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
gi|203282575|pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
gi|203282576|pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
gi|203282577|pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
gi|203282578|pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
gi|203282579|pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
gi|203282580|pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
gi|203282581|pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
Length = 197
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 96/177 (54%), Gaps = 20/177 (11%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS------SLL 142
K V++GDTVVDATCGNG DT + +V + G V+G DIQ +A+ +T+ +L+
Sbjct: 17 KMFVKEGDTVVDATCGNGNDTAFLASLVGEN---GRVFGFDIQDKAIANTTKKLTDLNLI 73
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL 202
D+ T L H M++ + V+ V FNLGYLP GD S+ T ETT AL
Sbjct: 74 DRVT---------LIKDGHQNMDKYI--DCPVKAVMFNLGYLPSGDHSISTRPETTIQAL 122
Query: 203 EAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
A +L+ GG+I++V+Y G G EE E V F + + +I + +N+ P
Sbjct: 123 SKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCP 179
>gi|385262288|ref|ZP_10040398.1| MraW methylase-like family protein [Streptococcus sp. SK643]
gi|385190844|gb|EIF38273.1| MraW methylase-like family protein [Streptococcus sp. SK643]
Length = 185
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV + D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTQDDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTQERLD 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + +L H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 62 QASLTN----ARLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITRPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 115 KLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVSQLNQQEYTATIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|228999537|ref|ZP_04159115.1| hypothetical protein bmyco0003_40920 [Bacillus mycoides Rock3-17]
gi|229007095|ref|ZP_04164721.1| hypothetical protein bmyco0002_39940 [Bacillus mycoides Rock1-4]
gi|228754140|gb|EEM03559.1| hypothetical protein bmyco0002_39940 [Bacillus mycoides Rock1-4]
gi|228760248|gb|EEM09216.1| hypothetical protein bmyco0003_40920 [Bacillus mycoides Rock3-17]
Length = 177
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 101/181 (55%), Gaps = 14/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V++GD VDAT GNG+DT + ++V + G V+G DIQ +A++S+++ L E+
Sbjct: 5 VKEGDYAVDATLGNGHDTCFLAEIVGEH---GKVFGFDIQRKAIESSATHL------KER 55
Query: 152 GLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
GL + L + H + ++P+ ++ FNLGYLPGGDK ++T +T A+E
Sbjct: 56 GLEERTVLVHDSHDTLLSVLPEEAKGKVTGAIFNLGYLPGGDKHIVTKPNSTIAAIEQLL 115
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+ P + +
Sbjct: 116 EVMAPEGIIVLVIYHGHPEGQVERDAVLQFAEELDQKQAHVLRYGFINQQNNPPFIVAIE 175
Query: 267 R 267
+
Sbjct: 176 K 176
>gi|125973214|ref|YP_001037124.1| putative rRNA methylase [Clostridium thermocellum ATCC 27405]
gi|256003689|ref|ZP_05428677.1| putative rRNA methylase [Clostridium thermocellum DSM 2360]
gi|385778876|ref|YP_005688041.1| rRNA methylase [Clostridium thermocellum DSM 1313]
gi|419723107|ref|ZP_14250242.1| rRNA methylase [Clostridium thermocellum AD2]
gi|419724989|ref|ZP_14252044.1| rRNA methylase [Clostridium thermocellum YS]
gi|125713439|gb|ABN51931.1| rRNA methylase [Clostridium thermocellum ATCC 27405]
gi|255992250|gb|EEU02344.1| putative rRNA methylase [Clostridium thermocellum DSM 2360]
gi|316940556|gb|ADU74590.1| rRNA methylase [Clostridium thermocellum DSM 1313]
gi|380771609|gb|EIC05474.1| rRNA methylase [Clostridium thermocellum YS]
gi|380780874|gb|EIC10537.1| rRNA methylase [Clostridium thermocellum AD2]
Length = 188
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 96/177 (54%), Gaps = 20/177 (11%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS------SLL 142
K V++GDTVVDATCGNG DT + +V + G V+G DIQ +A+ +T+ +L+
Sbjct: 16 KMFVKEGDTVVDATCGNGNDTAFLASLVGEN---GRVFGFDIQDKAIANTTKKLTDLNLI 72
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL 202
D+ T L H M++ + V+ V FNLGYLP GD S+ T ETT AL
Sbjct: 73 DRVT---------LIKDGHQNMDKYI--DCPVKAVMFNLGYLPSGDHSISTRPETTIQAL 121
Query: 203 EAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
A +L+ GG+I++V+Y G G EE E V F + + +I + +N+ P
Sbjct: 122 SKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCP 178
>gi|423557675|ref|ZP_17533977.1| hypothetical protein II3_02879 [Bacillus cereus MC67]
gi|401192685|gb|EJQ99697.1| hypothetical protein II3_02879 [Bacillus cereus MC67]
Length = 190
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 98/181 (54%), Gaps = 14/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S++ L EK
Sbjct: 18 VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRL------KEK 68
Query: 152 GLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
L + L + H + I+P ++ FNLGYLPGGDK ++T +T A+E
Sbjct: 69 ELFERTVLVHDSHDTLLSILPDDAKEKVTGAIFNLGYLPGGDKHIVTKPNSTISAIEQLL 128
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+ P + +
Sbjct: 129 DVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNNPPFIVAIE 188
Query: 267 R 267
+
Sbjct: 189 K 189
>gi|253681007|ref|ZP_04861810.1| possible rRNA methylase [Clostridium botulinum D str. 1873]
gi|253562856|gb|EES92302.1| possible rRNA methylase [Clostridium botulinum D str. 1873]
Length = 189
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 102/177 (57%), Gaps = 9/177 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ GD VDAT GNG DT+ + ++V D +G VY D+Q EA+ +T K K
Sbjct: 21 LQHGDIAVDATMGNGNDTVFLAELVGD---SGTVYSFDVQKEAIDNTRK---KIIDNKIK 74
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
++L + H +++ + K V+LV FNLGYLP + + T ++TT +A++ + ++
Sbjct: 75 TNIQLIHDGHENIDKYINKD--VKLVMFNLGYLPKAEHKITTKADTTLIAIKKSLNLIHK 132
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFKR 267
G++ +V+Y GH G+ E AVE FA +L+ ++ K + +N+ P+L+ + KR
Sbjct: 133 NGVVLVVIYHGHENGKLEKVAVEEFASTLNQKEYNVMKLEFINQVNNPPILIAIEKR 189
>gi|350267228|ref|YP_004878535.1| hypothetical protein GYO_3301 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349600115|gb|AEP87903.1| conserved protein YtqB [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 194
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 101/201 (50%), Gaps = 17/201 (8%)
Query: 69 LCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL 128
L K P S L+ +AA +GD VDAT GNG+DT + ++V + G VY
Sbjct: 3 LKKILPYSKELLKMAAG--------EGDIAVDATMGNGHDTQFLAELVGEN---GHVYAF 51
Query: 129 DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPG 186
DIQ A+ +T L +T + LF+ H ++ E +P T ++ A FNLGYLPG
Sbjct: 52 DIQESAVANTKERLGETY----QARTTLFHKSHDKIAESLPPETHGKVAAAVFNLGYLPG 107
Query: 187 GDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246
GDKS+ T +T A+E I+ GLI +VVY GHP G+ E V F R+L
Sbjct: 108 GDKSITTNGNSTIKAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLDFCRNLDQQAAR 167
Query: 247 CCKFQMLNRPLAPVLVFLFKR 267
+ +N+ P + ++
Sbjct: 168 VLTYGFINQQNDPPFIVAIEK 188
>gi|423512856|ref|ZP_17489387.1| hypothetical protein IG3_04353 [Bacillus cereus HuA2-1]
gi|402447369|gb|EJV79222.1| hypothetical protein IG3_04353 [Bacillus cereus HuA2-1]
Length = 190
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S++ L
Sbjct: 10 ARSLLQTTVKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRL- 65
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 66 -----KEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L + ++ +N+
Sbjct: 121 LSAIEQLLGVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKEAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|423660397|ref|ZP_17635566.1| hypothetical protein IKM_00794 [Bacillus cereus VDM022]
gi|401303067|gb|EJS08634.1| hypothetical protein IKM_00794 [Bacillus cereus VDM022]
Length = 190
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S++ L
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRL- 65
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 66 -----KEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L + ++ +N+
Sbjct: 121 LSAIEQLLGVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKEAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|390456810|ref|ZP_10242338.1| SAM-dependent methyltransferase [Paenibacillus peoriae KCTC 3763]
Length = 193
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 103/182 (56%), Gaps = 12/182 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK--A 149
V+ GD VDAT G G DTL + K G VYG DIQ EAL+ L++ TS A
Sbjct: 18 VQPGDAAVDATVGTGADTLFLAKAAGKR---GHVYGFDIQQEALQLARRRLEENTSSPLA 74
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLP--GGDKSVITTSETTKMALEAA 205
E V L H +M E VP + ++ A FNLGYLP G D SVIT +++T ALEAA
Sbjct: 75 E---VSLLLQGHEQMREAVPDNLHGKVAAVMFNLGYLPSEGADPSVITHTDSTLAALEAA 131
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
++L P G+++ V+Y GH GG EE EAV +A +L V ++ L R +P LV +
Sbjct: 132 LQLLRPRGILTAVLYPGHAGGNEEAEAVLQWASALPVSIGQSIIYRQLQRDTSPYLVAVE 191
Query: 266 KR 267
K+
Sbjct: 192 KK 193
>gi|303232176|ref|ZP_07318879.1| methyltransferase domain protein [Veillonella atypica
ACS-049-V-Sch6]
gi|302513282|gb|EFL55321.1| methyltransferase domain protein [Veillonella atypica
ACS-049-V-Sch6]
Length = 191
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 99/182 (54%), Gaps = 6/182 (3%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKT 145
+W +++ VVDATCGNG+D L + A+ + + C +YG+DIQ +A+ ++ LL
Sbjct: 14 IWDRIMKSASVVVDATCGNGHDLLYL----AERAQSECHLYGIDIQEQAVSASRELLASK 69
Query: 146 TSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA 205
++ + L N + + + ++T + L+ FNLGYLPGGD S+IT T AL A
Sbjct: 70 KLQSNVTITFLHNSHDIALHQEIKENT-IDLIIFNLGYLPGGDHSIITRPHNTIEALNNA 128
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
L G+I++V Y G P G EE EA+ + L + C + +N+ P ++L
Sbjct: 129 FPKLAKDGIITIVAYPGTPEGMEEKEALHEYIARLDQAKYNVCHWHPINQANNPPELYLI 188
Query: 266 KR 267
++
Sbjct: 189 QK 190
>gi|423417330|ref|ZP_17394419.1| hypothetical protein IE3_00802 [Bacillus cereus BAG3X2-1]
gi|401108058|gb|EJQ15991.1| hypothetical protein IE3_00802 [Bacillus cereus BAG3X2-1]
Length = 190
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD VDAT GNG+DT + ++V D G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++S++ L EK L + L + H + ++P+ ++ FNLGYLPGGD
Sbjct: 57 AIESSTIRL------KEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E ++ P G+I +V+Y GHP G+ E +AV FA L
Sbjct: 111 KHIVTKPNSTLSAIEQLLDVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|417848296|ref|ZP_12494242.1| MraW methylase-like family protein [Streptococcus mitis SK1073]
gi|339452822|gb|EGP65443.1| MraW methylase-like family protein [Streptococcus mitis SK1073]
Length = 185
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 98/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L+
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTQERLN 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ +L H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 62 QAGMTN----AQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 115 KLCHLLVKGGRIAIMIYYGHEGGDLERDAVLDFVSQLNQQEYTAAIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|383938534|ref|ZP_09991743.1| MraW methylase-like family protein [Streptococcus pseudopneumoniae
SK674]
gi|383714594|gb|EID70591.1| MraW methylase-like family protein [Streptococcus pseudopneumoniae
SK674]
Length = 185
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 100/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTKERLD 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ GL +L H +++ V ++ A FNLGYLP DKSVIT +TT A
Sbjct: 62 QA------GLTNAQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITRPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 113 LEKLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|423451940|ref|ZP_17428793.1| hypothetical protein IEE_00684 [Bacillus cereus BAG5X1-1]
gi|401142746|gb|EJQ50286.1| hypothetical protein IEE_00684 [Bacillus cereus BAG5X1-1]
Length = 190
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 99/181 (54%), Gaps = 14/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S++ L EK
Sbjct: 18 VKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRL------KEK 68
Query: 152 GLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T A+E
Sbjct: 69 ELFERTVLVHDSHDTLVSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNSTISAIEQLL 128
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+ P + +
Sbjct: 129 ELMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNNPPFIVAIE 188
Query: 267 R 267
+
Sbjct: 189 K 189
>gi|311031210|ref|ZP_07709300.1| putative rRNA methylase [Bacillus sp. m3-13]
Length = 190
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 103/186 (55%), Gaps = 14/186 (7%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K + +GD VD T GNG+DTL + ++V + G V+G DIQ+EAL +T +LL
Sbjct: 13 IMKLALTEGDIAVDCTVGNGHDTLFLSELVGEN---GHVFGFDIQAEALSNTKTLL---- 65
Query: 147 SKAEKGL---VKLFNMCHSRMEEIVP--KSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
AE G+ V LF H+++ E +P K +R FNLGYLPGGDK ++T E+T A
Sbjct: 66 --AEHGVESRVTLFEDSHAKVLERIPSEKHHLIRGAIFNLGYLPGGDKEIVTVPESTMEA 123
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
+ + ++ +I +V+Y GHP G+ E +A+ + L +++ +N+ P
Sbjct: 124 VNSLLTVMEKEAVIVLVIYHGHPEGQVERDALLDYVTKLDQKKAHVLQYRFMNQINNPPF 183
Query: 262 VFLFKR 267
+ ++
Sbjct: 184 IIAIEK 189
>gi|294507539|ref|YP_003571597.1| SAM-dependent methyltransferase [Salinibacter ruber M8]
gi|294343867|emb|CBH24645.1| SAM-dependent methyltransferases [Salinibacter ruber M8]
Length = 192
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V +G VDAT GNG+DT + + V + D+Q EAL T L++ A
Sbjct: 18 VGEGGIAVDATVGNGHDTAFLARAVGAGGAVVG---FDVQEEALVETRHRLEREALSAP- 73
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L + H + + ++ R+ A FNLGYLPGGD SV+T ETT+ AL+A L
Sbjct: 74 --VRLVHAGHQTLARHLEEAERGRVGAIMFNLGYLPGGDHSVVTRPETTRQALDAGTEAL 131
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
PGG+I++V Y GH GG EE +AVEA+A +L + ++ N P +F ++
Sbjct: 132 RPGGVITVVAYTGHEGGDEEADAVEAWASALPQAQFRALSYRFPNWSNDPPRLFAVEK 189
>gi|163942480|ref|YP_001647364.1| putative rRNA methylase [Bacillus weihenstephanensis KBAB4]
gi|163864677|gb|ABY45736.1| putative rRNA methylase [Bacillus weihenstephanensis KBAB4]
Length = 190
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 100/186 (53%), Gaps = 8/186 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S++ L
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRLK 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMA 201
K LV + H + ++P+ ++ FNLGYLPGGDK ++T +T A
Sbjct: 67 KKELFERTVLV---HDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNSTLSA 123
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+ P
Sbjct: 124 IEQLLGVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNNPPF 183
Query: 262 VFLFKR 267
+ ++
Sbjct: 184 IVAIEK 189
>gi|352516277|ref|YP_004885594.1| hypothetical protein TEH_01030 [Tetragenococcus halophilus NBRC
12172]
gi|348600384|dbj|BAK93430.1| hypothetical protein TEH_01030 [Tetragenococcus halophilus NBRC
12172]
Length = 187
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 97/181 (53%), Gaps = 8/181 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAL-KSTSSLL 142
++ + K ++ D VVDAT GNG DTL + + V G VY D+Q +AL K+ L+
Sbjct: 9 SHTLLKEILTDYDHVVDATMGNGNDTLFLAQTV---QPNGKVYAFDVQKQALLKTQQRLV 65
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL 202
D + +L H +E + + A++ FNLGYLP DK++ T TT+ AL
Sbjct: 66 DNKLMEH----TELIQDGHEHIENYLTEDEAIKAAIFNLGYLPKSDKTLTTLPATTRKAL 121
Query: 203 EAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
+ + L G I +V Y GH GG+EEL V+ + ++L D + ++Q +N+ P ++
Sbjct: 122 DILLKHLSDKGRIVIVSYYGHAGGKEELTMVDHYCQNLPQDQYNVLRYQFINQKNDPPIL 181
Query: 263 F 263
F
Sbjct: 182 F 182
>gi|423377397|ref|ZP_17354681.1| hypothetical protein IC9_00750 [Bacillus cereus BAG1O-2]
gi|423440506|ref|ZP_17417412.1| hypothetical protein IEA_00836 [Bacillus cereus BAG4X2-1]
gi|423449344|ref|ZP_17426223.1| hypothetical protein IEC_03952 [Bacillus cereus BAG5O-1]
gi|423463570|ref|ZP_17440338.1| hypothetical protein IEK_00757 [Bacillus cereus BAG6O-1]
gi|423532922|ref|ZP_17509340.1| hypothetical protein IGI_00754 [Bacillus cereus HuB2-9]
gi|423541814|ref|ZP_17518205.1| hypothetical protein IGK_03906 [Bacillus cereus HuB4-10]
gi|423622161|ref|ZP_17597939.1| hypothetical protein IK3_00759 [Bacillus cereus VD148]
gi|401128231|gb|EJQ35930.1| hypothetical protein IEC_03952 [Bacillus cereus BAG5O-1]
gi|401169634|gb|EJQ76878.1| hypothetical protein IGK_03906 [Bacillus cereus HuB4-10]
gi|401262259|gb|EJR68403.1| hypothetical protein IK3_00759 [Bacillus cereus VD148]
gi|401639206|gb|EJS56946.1| hypothetical protein IC9_00750 [Bacillus cereus BAG1O-2]
gi|402419649|gb|EJV51928.1| hypothetical protein IEA_00836 [Bacillus cereus BAG4X2-1]
gi|402421771|gb|EJV54019.1| hypothetical protein IEK_00757 [Bacillus cereus BAG6O-1]
gi|402464644|gb|EJV96334.1| hypothetical protein IGI_00754 [Bacillus cereus HuB2-9]
Length = 190
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 101/189 (53%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+D + ++V D G V+G DIQ EA++S++ L
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDACFLAEIVGDN---GKVFGFDIQKEAIESSTIRL- 65
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 66 -----KEKKLFERTVLVHDSHDTLVSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E I+ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 ISAIEQLLEIMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|56964638|ref|YP_176369.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
clausii KSM-K16]
gi|56910881|dbj|BAD65408.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
clausii KSM-K16]
Length = 194
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 108/195 (55%), Gaps = 15/195 (7%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + +L+T A V+ GDTVVDAT GNG+DTL++ K+V + G V G DIQ+
Sbjct: 8 PFAHSLLTSA--------VQPGDTVVDATIGNGHDTLVLAKLVGE---TGVVIGCDIQAS 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI-VPKSTAVRLVAFNLGYLPGGDKSVI 192
AL ST + L K + V LF + H ++ + + ++ + FNLGYLPGGDK V
Sbjct: 57 ALTSTEARLQKAGLDKQ---VSLFQIGHEKLATLPLFVNSTIAAAIFNLGYLPGGDKGVT 113
Query: 193 TTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQM 252
TT +TT A+E L GGLI +VVY GHP G++E + A+ SL + +Q
Sbjct: 114 TTGKTTIAAIEQLFNRLKQGGLIVLVVYHGHPQGKKEKNELLAYVESLPQEKAHAATYQF 173
Query: 253 LNRPLAPVLVFLFKR 267
+N+ P V ++
Sbjct: 174 INQKNDPPFVVAIEK 188
>gi|331092166|ref|ZP_08340996.1| hypothetical protein HMPREF9477_01639 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401938|gb|EGG81512.1| hypothetical protein HMPREF9477_01639 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 186
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 97/173 (56%), Gaps = 12/173 (6%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD--KTT 146
K+ V++G+T VDAT GNG DTL++ ++V ++ G VY DIQ +AL+ T L+ K
Sbjct: 15 KNHVKEGETCVDATAGNGNDTLLLAELVGEK---GKVYAFDIQEQALRRTKERLEEKKLD 71
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
S+AE L H + EIV + V + FN GYLPGGD S+ T E++ A+E
Sbjct: 72 SRAE-----LILQSHEEIGEIVKEE--VSCIVFNFGYLPGGDHSLSTKKESSIKAIETGL 124
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
+L GGL+S+ +Y G G EE + + + R+L ++ + NRP P
Sbjct: 125 SLLKKGGLMSLCIYSGGDSGFEEKDGILQYLRTLDSKKYLVIVSEYYNRPNNP 177
>gi|116333701|ref|YP_795228.1| SAM-dependent methyltransferase [Lactobacillus brevis ATCC 367]
gi|116099048|gb|ABJ64197.1| SAM-dependent methyltransferase [Lactobacillus brevis ATCC 367]
Length = 188
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 93/181 (51%), Gaps = 6/181 (3%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K V G TV+DAT G G DT+ + +V +G V G DIQ AL +T L T
Sbjct: 13 LLKECVGPGATVIDATVGKGNDTVFLANLVG---KSGHVIGFDIQQAALDATQQQLTLTG 69
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
+ V L + H ++ + T V FNLGYLPGGDK +IT ETT A++A
Sbjct: 70 LSQQ---VTLHAVGHEQVAAYLDPETPVAAAIFNLGYLPGGDKQIITRPETTLRAIKALL 126
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
L GG + +VVY GHPGG+ E +AV F + L + ++ +N+ P + +
Sbjct: 127 PHLPRGGRLILVVYAGHPGGQAERQAVLDFCQQLPQKTYQVLQYGFINQIHTPPFLLAIE 186
Query: 267 R 267
R
Sbjct: 187 R 187
>gi|83814943|ref|YP_445647.1| rRNA methylase [Salinibacter ruber DSM 13855]
gi|83756337|gb|ABC44450.1| Putative rRNA methylase superfamily [Salinibacter ruber DSM 13855]
Length = 192
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V +G VDAT GNG+DT + + V + D+Q EAL T L++ A
Sbjct: 18 VGEGGIAVDATVGNGHDTAFLAQAVGAGGAVVG---FDVQEEALVETRHRLEREALSAP- 73
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L + H + + ++ R+ A FNLGYLPGGD SV+T ETT+ AL+A L
Sbjct: 74 --VRLVHAGHQTLARHLEEAERGRVGAIMFNLGYLPGGDHSVVTRPETTRQALDAGTEAL 131
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
PGG+I++V Y GH GG EE +AVEA+A +L + ++ N P +F ++
Sbjct: 132 RPGGVITVVAYTGHEGGDEEADAVEAWASALPQAQFRALSYRFPNWSNDPPRLFAVEK 189
>gi|430757677|ref|YP_007208448.1| hypothetical protein A7A1_2185 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430022197|gb|AGA22803.1| Hypothetical protein YtqB [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 194
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 97/196 (49%), Gaps = 17/196 (8%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S L+ +AA +GD VVDAT GNG+DT + ++V + G VY DIQ
Sbjct: 8 PYSKELLKMAAG--------EGDIVVDATMGNGHDTQFLAELVGEN---GHVYAFDIQES 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
A+ +T L + LF+ H ++ E +P T ++ A FNLGYLPGGDKS+
Sbjct: 57 AVDNTKERL----GDMYQARTTLFHKSHDKIAESLPPETHGKVAAAVFNLGYLPGGDKSI 112
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
T +T A+E I+ GLI +VVY GHP G+ E V F R L +
Sbjct: 113 TTNGSSTIKAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLEFCRDLDQQSARVLTYG 172
Query: 252 MLNRPLAPVLVFLFKR 267
+N+ P + ++
Sbjct: 173 FINQQNDPPFIVAIEK 188
>gi|423519440|ref|ZP_17495921.1| hypothetical protein IG7_04510 [Bacillus cereus HuA2-4]
gi|401158459|gb|EJQ65850.1| hypothetical protein IG7_04510 [Bacillus cereus HuA2-4]
Length = 190
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S++ L
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRL- 65
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 66 -----KEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 LSAIEQLLGVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|423521364|ref|ZP_17497837.1| hypothetical protein IGC_00747 [Bacillus cereus HuA4-10]
gi|401178570|gb|EJQ85747.1| hypothetical protein IGC_00747 [Bacillus cereus HuA4-10]
Length = 190
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+DT + ++V D G V+G DIQ EA++S++ L
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRL- 65
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 66 -----KEKELFERTVLVHDSHDTLLSVLPEDATGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 LSAIEQLLGVMAPEGIIILVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|320102617|ref|YP_004178208.1| rRNA methylase [Isosphaera pallida ATCC 43644]
gi|319749899|gb|ADV61659.1| rRNA methylase [Isosphaera pallida ATCC 43644]
Length = 212
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 97/178 (54%), Gaps = 12/178 (6%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+R GD VDAT G G DT+ + ++V G V G +IQ EA++ LL +
Sbjct: 31 VLRPGDLAVDATVGWGRDTVFLAELVG---PTGQVVGFEIQDEAIRRARDLL---VQRGL 84
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
+ V L + H R+ + + ++ FNLGYLPG D +V T +E+T +ALEA R L
Sbjct: 85 QDRVTLKWLGHERLNDALDNRAVIKAAMFNLGYLPGSDHTVTTRAESTLIALEAVWRRLD 144
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFA--RSLSVD--DWICCKFQMLNRPLAPVLVFL 264
GL+++V Y GHPGG EE AV ++A R+ S D W C F RP P LV +
Sbjct: 145 RSGLVTIVCYPGHPGGMEETHAVASWAADRASSGDAIAW-SCAFLNSRRP-PPRLVIV 200
>gi|417793602|ref|ZP_12440875.1| putative rRNA methylase [Streptococcus oralis SK255]
gi|334272565|gb|EGL90928.1| putative rRNA methylase [Streptococcus oralis SK255]
Length = 185
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 97/184 (52%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DT + K+ A V+ DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTFFLAKL------AKQVFAFDIQEQALEKTQERLD 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ +L H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 62 QAGMTN----AQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 115 KLCHLLVKGGRIAIMIYYGHEGGDTERDAVLDFVSQLNQQEYTAAIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 IIEK 178
>gi|428280530|ref|YP_005562265.1| hypothetical protein BSNT_04441 [Bacillus subtilis subsp. natto
BEST195]
gi|449095492|ref|YP_007427983.1| putative RNA methylase [Bacillus subtilis XF-1]
gi|291485487|dbj|BAI86562.1| hypothetical protein BSNT_04441 [Bacillus subtilis subsp. natto
BEST195]
gi|449029407|gb|AGE64646.1| putative RNA methylase [Bacillus subtilis XF-1]
Length = 194
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 99/201 (49%), Gaps = 17/201 (8%)
Query: 69 LCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL 128
L K P S L+ +AA +GD VVDAT GNG+DT + ++V + G VY
Sbjct: 3 LKKILPYSKELLKMAAG--------EGDIVVDATMGNGHDTQFLAELVGEN---GHVYAF 51
Query: 129 DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPG 186
DIQ A+ +T L + LF+ H ++ E +P T ++ A FNLGYLPG
Sbjct: 52 DIQESAVANTKERL----GDMYQARTTLFHKSHDKIAESLPPETHGKVAAAVFNLGYLPG 107
Query: 187 GDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246
GDKS+ T +T A+E I+ GLI +VVY GHP G+ E V F R L
Sbjct: 108 GDKSITTNGSSTIKAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLEFCRDLDQQSAR 167
Query: 247 CCKFQMLNRPLAPVLVFLFKR 267
+ +N+ P + ++
Sbjct: 168 VLTYGFINQQNDPPFIVAIEK 188
>gi|444422107|ref|ZP_21217771.1| putative rRNA methylase, partial [Streptococcus pneumoniae PNI0446]
gi|444288603|gb|ELU93495.1| putative rRNA methylase, partial [Streptococcus pneumoniae PNI0446]
Length = 188
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 11 AHDFLAEVVTKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQKQALEKTQERL- 63
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+A+ +L H +++ V K+ A FNLGYLP DKSVIT +TT ALE
Sbjct: 64 ---HQADLTNAQLILQGHETLDQFVIKAKAG---IFNLGYLPSADKSVITRPQTTIEALE 117
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 118 KLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPFLV 177
Query: 264 LFKR 267
+ ++
Sbjct: 178 MIEK 181
>gi|15900553|ref|NP_345157.1| hypothetical protein SP_0652 [Streptococcus pneumoniae TIGR4]
gi|111657722|ref|ZP_01408447.1| hypothetical protein SpneT_02001094 [Streptococcus pneumoniae
TIGR4]
gi|421246907|ref|ZP_15703395.1| rRNA methylase family protein [Streptococcus pneumoniae 2082170]
gi|14972124|gb|AAK74797.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
gi|395615063|gb|EJG75080.1| rRNA methylase family protein [Streptococcus pneumoniae 2082170]
Length = 185
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 8 AHDFLAEVVTKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQKQALEKTQERL- 60
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+A+ +L H +++ V K+ A FNLGYLP DKSVIT +TT ALE
Sbjct: 61 ---HQADLTNAQLILQGHETLDQFVIKAKAG---IFNLGYLPAADKSVITRPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 115 KLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|443632396|ref|ZP_21116576.1| hypothetical protein BSI_16470 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443348511|gb|ELS62568.1| hypothetical protein BSI_16470 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 194
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 100/201 (49%), Gaps = 17/201 (8%)
Query: 69 LCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL 128
L K P S L+ +AA +GD VVDAT GNG+DT + ++V + G VY
Sbjct: 3 LKKILPYSKELLKMAAG--------EGDIVVDATMGNGHDTQFLAELVGEN---GHVYAF 51
Query: 129 DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPG 186
DIQ A+ +T L +T + LF+ H ++ E +P ++ A FNLGYLPG
Sbjct: 52 DIQESAVANTKERLGETF----QARTTLFHKSHDKIAESLPPEAHGKVAAAVFNLGYLPG 107
Query: 187 GDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246
GDKS+ T +T A+E I+ GLI +VVY GHP G+ E V F R L
Sbjct: 108 GDKSITTNGSSTVKAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLDFCRDLDQQTAR 167
Query: 247 CCKFQMLNRPLAPVLVFLFKR 267
+ +N+ P + ++
Sbjct: 168 VLTYGFINQQNDPPFIVAIEK 188
>gi|452976860|gb|EME76674.1| rRNA methylase YtqB [Bacillus sonorensis L12]
Length = 194
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 99/186 (53%), Gaps = 9/186 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + K +GD V+DAT GNG+DT + ++V + +G VY DIQ AL +T+ L
Sbjct: 10 AKELLKTAAGEGDIVIDATMGNGHDTFFLAELVGE---SGHVYAFDIQETALLNTAERL- 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMA 201
K V L H + +P+ + ++ A FNLGYLPGGDKSV T SE+T +
Sbjct: 66 ---GNEYKDRVTLIQKSHVELIASLPEGVSGKVAAAVFNLGYLPGGDKSVTTKSESTIAS 122
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
++ IL GLI +VVY GHP G+ E +A+ F SL + +Q LN+ P
Sbjct: 123 IKQLLNILKDEGLIVLVVYHGHPEGKREKDALLEFCASLDQETARVLCYQYLNQRNDPPF 182
Query: 262 VFLFKR 267
+ ++
Sbjct: 183 IIAIEK 188
>gi|354558203|ref|ZP_08977459.1| rRNA methylase [Desulfitobacterium metallireducens DSM 15288]
gi|353548928|gb|EHC18372.1| rRNA methylase [Desulfitobacterium metallireducens DSM 15288]
Length = 192
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 92/167 (55%), Gaps = 14/167 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ GDT +D T G G DTL + + V G VY DIQ+ AL T LL+ E+
Sbjct: 20 IELGDTALDLTAGLGRDTLFLAQAVG---PNGRVYAFDIQAIALAETQRLLE------EE 70
Query: 152 GL---VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
G+ V L H+R++E V S V+L FNLGYLPG D SV T +++T AL+ ++
Sbjct: 71 GVAEWVTLHQADHARVQEFV--SEPVKLAMFNLGYLPGSDHSVTTQAKSTLQALQDVLKL 128
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR 255
L+ G++++ VY GHPGG EE AV F L + + Q +N+
Sbjct: 129 LVENGILALTVYRGHPGGEEEARAVHEFLTDLPPKSYSVLEGQYINQ 175
>gi|415884017|ref|ZP_11546046.1| hypothetical protein MGA3_02520 [Bacillus methanolicus MGA3]
gi|387591812|gb|EIJ84129.1| hypothetical protein MGA3_02520 [Bacillus methanolicus MGA3]
Length = 190
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 94/181 (51%), Gaps = 14/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V GD VDAT GNGYDTL + +V G VYG DIQ EAL ++ L AE
Sbjct: 18 VSPGDVAVDATLGNGYDTLFLANLVG---PNGRVYGFDIQEEALAASKHRL------AEH 68
Query: 152 GL---VKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETTKMALEAAE 206
L V F+ H + E +P ++ FNLGYLPGGDKS++T +TT A+E
Sbjct: 69 NLLDRVTFFHKGHEHILESIPPVHHGKISGAVFNLGYLPGGDKSIVTKPKTTISAIEQLL 128
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
I+ P G+I +V+Y GH G E + + + L ++ +++ +N+ P + +
Sbjct: 129 EIMAPEGIIVVVIYHGHREGAVERDYLLRYVEQLDQNEVHVLQYRFMNQKNNPPFIIAIE 188
Query: 267 R 267
+
Sbjct: 189 K 189
>gi|418086385|ref|ZP_12723556.1| rRNA methylase [Streptococcus pneumoniae GA47033]
gi|418132375|ref|ZP_12769250.1| rRNA methylase [Streptococcus pneumoniae GA11304]
gi|418201937|ref|ZP_12838368.1| rRNA methylase [Streptococcus pneumoniae GA52306]
gi|419512063|ref|ZP_14051697.1| rRNA methylase [Streptococcus pneumoniae GA05578]
gi|353759648|gb|EHD40231.1| rRNA methylase [Streptococcus pneumoniae GA47033]
gi|353808041|gb|EHD88310.1| rRNA methylase [Streptococcus pneumoniae GA11304]
gi|353868619|gb|EHE48505.1| rRNA methylase [Streptococcus pneumoniae GA52306]
gi|379636533|gb|EIA01091.1| rRNA methylase [Streptococcus pneumoniae GA05578]
Length = 179
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 2 AHDFLAEVVTKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQKQALEKTQERL- 54
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+A+ +L H +++ V K+ A FNLGYLP DKSVIT +TT ALE
Sbjct: 55 ---HQADLTNAQLILQGHETLDQFVIKAKAG---IFNLGYLPSADKSVITRPQTTIEALE 108
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 109 KLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPFLV 168
Query: 264 LFKR 267
+ ++
Sbjct: 169 MIEK 172
>gi|296331975|ref|ZP_06874439.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305675631|ref|YP_003867303.1| RNA methylase [Bacillus subtilis subsp. spizizenii str. W23]
gi|296150746|gb|EFG91631.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305413875|gb|ADM38994.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 194
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 102/201 (50%), Gaps = 17/201 (8%)
Query: 69 LCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL 128
L K P S L+ +AA +GD V+DAT GNG+DT + ++V + G VY
Sbjct: 3 LKKILPYSKELLKMAAG--------EGDIVIDATMGNGHDTQFLAELVGEN---GHVYAF 51
Query: 129 DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPG 186
DIQ A+ +T L +A + LF+ H ++ + +P T ++ A FNLGYLPG
Sbjct: 52 DIQESAVANTKERL----GEAYQARTTLFHKSHDKIAKSLPPETHGKVAAAVFNLGYLPG 107
Query: 187 GDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246
GDKS+ T +T A+E I+ GLI +VVY GHP G+ E V F R+L
Sbjct: 108 GDKSITTNGSSTIKAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLDFCRNLDQQAAR 167
Query: 247 CCKFQMLNRPLAPVLVFLFKR 267
+ +N+ P + ++
Sbjct: 168 VLTYGFINQQNDPPFIVAIEK 188
>gi|149005767|ref|ZP_01829506.1| hypothetical protein CGSSp18BS74_09380 [Streptococcus pneumoniae
SP18-BS74]
gi|169834297|ref|YP_001694128.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
Hungary19A-6]
gi|307126848|ref|YP_003878879.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 670-6B]
gi|387626053|ref|YP_006062225.1| putative rRNA methylase [Streptococcus pneumoniae INV104]
gi|417676416|ref|ZP_12325829.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
[Streptococcus pneumoniae GA17545]
gi|417693588|ref|ZP_12342777.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
[Streptococcus pneumoniae GA47901]
gi|418148101|ref|ZP_12784866.1| rRNA methylase [Streptococcus pneumoniae GA13856]
gi|418225089|ref|ZP_12851718.1| rRNA methylase [Streptococcus pneumoniae NP112]
gi|419455052|ref|ZP_13995012.1| rRNA methylase [Streptococcus pneumoniae EU-NP04]
gi|419481677|ref|ZP_14021471.1| rRNA methylase [Streptococcus pneumoniae GA40563]
gi|419516347|ref|ZP_14055965.1| rRNA methylase [Streptococcus pneumoniae GA02506]
gi|421231433|ref|ZP_15688080.1| rRNA methylase family protein [Streptococcus pneumoniae 2080076]
gi|421282854|ref|ZP_15733643.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA04216]
gi|421285646|ref|ZP_15736423.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA60190]
gi|444381791|ref|ZP_21179997.1| putative rRNA methylase [Streptococcus pneumoniae PCS8106]
gi|444385411|ref|ZP_21183484.1| putative rRNA methylase [Streptococcus pneumoniae PCS8203]
gi|444409247|ref|ZP_21205844.1| putative rRNA methylase [Streptococcus pneumoniae PNI0076]
gi|444412002|ref|ZP_21208328.1| putative rRNA methylase [Streptococcus pneumoniae PNI0153]
gi|147762707|gb|EDK69667.1| hypothetical protein CGSSp18BS74_09380 [Streptococcus pneumoniae
SP18-BS74]
gi|168996799|gb|ACA37411.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
Hungary19A-6]
gi|301793835|emb|CBW36228.1| putative rRNA methylase [Streptococcus pneumoniae INV104]
gi|306483910|gb|ADM90779.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 670-6B]
gi|332077081|gb|EGI87543.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
[Streptococcus pneumoniae GA17545]
gi|332204671|gb|EGJ18736.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
[Streptococcus pneumoniae GA47901]
gi|353812776|gb|EHD93009.1| rRNA methylase [Streptococcus pneumoniae GA13856]
gi|353882397|gb|EHE62208.1| rRNA methylase [Streptococcus pneumoniae NP112]
gi|379581356|gb|EHZ46241.1| rRNA methylase [Streptococcus pneumoniae GA40563]
gi|379629509|gb|EHZ94103.1| rRNA methylase [Streptococcus pneumoniae EU-NP04]
gi|379640350|gb|EIA04889.1| rRNA methylase [Streptococcus pneumoniae GA02506]
gi|395596532|gb|EJG56748.1| rRNA methylase family protein [Streptococcus pneumoniae 2080076]
gi|395882720|gb|EJG93764.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA04216]
gi|395887625|gb|EJG98640.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA60190]
gi|444250013|gb|ELU56497.1| putative rRNA methylase [Streptococcus pneumoniae PCS8203]
gi|444254043|gb|ELU60490.1| putative rRNA methylase [Streptococcus pneumoniae PCS8106]
gi|444275334|gb|ELU80961.1| putative rRNA methylase [Streptococcus pneumoniae PNI0153]
gi|444279981|gb|ELU85361.1| putative rRNA methylase [Streptococcus pneumoniae PNI0076]
Length = 185
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 8 AHDFLAEVVTKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQKQALEKTQERL- 60
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+A+ +L H +++ V K+ A FNLGYLP DKSVIT +TT ALE
Sbjct: 61 ---HQADLTNAQLILQGHETLDQFVIKAKAG---IFNLGYLPSADKSVITRPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 115 KLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|385259784|ref|ZP_10037944.1| putative rRNA methylase [Streptococcus sp. SK140]
gi|385193198|gb|EIF40577.1| putative rRNA methylase [Streptococcus sp. SK140]
Length = 185
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ + D VVDAT GNG+DT + K+ A VY DIQ +AL+ TS L
Sbjct: 8 AHDFLAQVITQEDIVVDATMGNGHDTFFLAKL------AKQVYAFDIQEQALEKTSQRLQ 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
E GL +L H +++ V T V+ FNLGYLP DKS+IT +TT A
Sbjct: 62 ------EAGLTNAELILQGHETVDQFV---TEVKAAIFNLGYLPSADKSIITQPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
L+ ++L+ GG I++++Y GH GG E +AV F L ++ ++ LN+ P
Sbjct: 113 LDKLCQMLVKGGRIAIMIYYGHEGGDIERDAVMDFVSHLPQQEYTATIYRTLNQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|89895091|ref|YP_518578.1| hypothetical protein DSY2345 [Desulfitobacterium hafniense Y51]
gi|219669504|ref|YP_002459939.1| rRNA methylase [Desulfitobacterium hafniense DCB-2]
gi|423073552|ref|ZP_17062291.1| putative rRNA methylase [Desulfitobacterium hafniense DP7]
gi|89334539|dbj|BAE84134.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539764|gb|ACL21503.1| putative rRNA methylase [Desulfitobacterium hafniense DCB-2]
gi|361855630|gb|EHL07593.1| putative rRNA methylase [Desulfitobacterium hafniense DP7]
Length = 193
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 97/176 (55%), Gaps = 9/176 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ GD +D T G G DTL + ++V E G V+ D+Q AL+ T LL K AE+
Sbjct: 20 IQPGDIALDLTAGRGRDTLFLAQLVGAE---GRVHAFDVQEVALQETQRLL-KEQQMAER 75
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V L++ H R+ E V V+ FNLGYLPG + + T + +T ALEA ++L
Sbjct: 76 --VHLYHWDHGRLLEKV--QDPVQAAMFNLGYLPGHSQEITTQAASTLAALEAVLQLLRQ 131
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFK 266
GG+I++ VY GHPGG EE AVE F L + + + +N+ P AP + + K
Sbjct: 132 GGVIALTVYRGHPGGLEEAAAVEEFLSCLPRRKYSVLRGEYINQLPNAPYWILVQK 187
>gi|354580050|ref|ZP_08998955.1| rRNA methylase [Paenibacillus lactis 154]
gi|353202481|gb|EHB67930.1| rRNA methylase [Paenibacillus lactis 154]
Length = 196
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 104/180 (57%), Gaps = 8/180 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+R G+ +DAT G G DTL + + V S G VY DIQ EAL+ T S L K +A
Sbjct: 18 LRAGEAALDATAGTGADTLFLARCVG---SKGKVYAFDIQEEALELTRSRLAKE-PQASI 73
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPG--GDKSVITTSETTKMALEAAER 207
G V L H+RM VP+ R+ V FNLGYLP DK ++T E+T ALE++ +
Sbjct: 74 GEVSLRLESHARMNSCVPEQLHGRIGAVMFNLGYLPADTADKQIMTVPESTIAALESSLQ 133
Query: 208 ILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+L PGG+I++V+Y GH GG E AVEA+A SL ++ L RP AP L+ L ++
Sbjct: 134 LLRPGGIITIVLYPGHRGGDTEAAAVEAWAASLPWSTAQTIVYRGLQRPDAPYLIALERK 193
>gi|322377325|ref|ZP_08051816.1| SAM-dependent methyltransferase, MraW methylase family
[Streptococcus sp. M334]
gi|321281525|gb|EFX58534.1| SAM-dependent methyltransferase, MraW methylase family
[Streptococcus sp. M334]
Length = 187
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV + D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 10 AHDFLAEVVTQDDIVVDATMGNGHDTLFLAKL------AKKVYAFDIQEQALEKTQERL- 62
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++A +L H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 63 ---NQAGMTNAQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITRPQTTIEALE 116
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 117 KLCHLLVKGGRIAIMIYYGHEGGDIERDAVLDFVSQLNQQEYTAATYRTLNQVNNPPFLV 176
Query: 264 LFKR 267
+ ++
Sbjct: 177 MIEK 180
>gi|374295874|ref|YP_005046065.1| rRNA methylase [Clostridium clariflavum DSM 19732]
gi|359825368|gb|AEV68141.1| Putative rRNA methylase [Clostridium clariflavum DSM 19732]
Length = 188
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 97/175 (55%), Gaps = 15/175 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V GD V+DAT GNG DT+ + K+V + G V+ DIQ A++ T L K
Sbjct: 19 VEPGDIVIDATAGNGNDTVFLAKLVGEN---GKVFAFDIQKVAIERTREKLLKI------ 69
Query: 152 GL---VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
GL V+L N H +++ + S V+ V FNLGYLPGGD + T +ETT A+E A +
Sbjct: 70 GLMDRVELINDGHENLDKYIQNS--VKAVMFNLGYLPGGDHKIGTKAETTICAIEKAMEL 127
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLV 262
L+ GGLIS+VVY G G EE V + ++ + K + +N+P P+LV
Sbjct: 128 LVAGGLISIVVYHGGDSGFEEKNRVMEYLYNIDPKKYTVMKTEFINQPNCPPILV 182
>gi|399923668|ref|ZP_10781026.1| putative rRNA methylase [Peptoniphilus rhinitidis 1-13]
Length = 181
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 95/173 (54%), Gaps = 13/173 (7%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
G VDAT G G DTL +LK+V + G VYG D+Q +A++ T LL +
Sbjct: 21 GKVAVDATIGKGNDTLKLLKVVGEN---GFVYGFDVQEDAIEKTRVLLKDFNN------Y 71
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGL 214
KLF H +++I A L+ +NLG+LPG DK + T E+T ++LE + +IL GG+
Sbjct: 72 KLFLESHEHIDKI----GAADLIIYNLGFLPGSDKKITTLKESTIISLEKSTKILNKGGI 127
Query: 215 ISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
I +V Y+GH EE AV+ F + L + K + N+ P +V+L ++
Sbjct: 128 IIVVSYLGHENSFEERVAVDEFLKELDQRIFRVEKREFYNQKHNPPIVYLIEK 180
>gi|334134449|ref|ZP_08507959.1| putative rRNA methylase [Paenibacillus sp. HGF7]
gi|333608257|gb|EGL19561.1| putative rRNA methylase [Paenibacillus sp. HGF7]
Length = 201
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 105/182 (57%), Gaps = 11/182 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT---TSK 148
VR GDTVVDAT GNG DTL + ++V G VYG DIQ +AL + + L++ +
Sbjct: 18 VRPGDTVVDATVGNGVDTLFLARLVG---RVGRVYGFDIQPQALDTARTRLERELDGSGG 74
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
A++ V L H+ M + VP R A FNLGYLPG D VIT +T ALEAA
Sbjct: 75 AQR--VSLLLRSHADMADAVPDDCLGRTAAVMFNLGYLPGADPGVITVPASTLPALEAAL 132
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLF 265
+L GG++++ +Y GH GG E +AVE++A +L + W ++ +N +P L+ +
Sbjct: 133 LLLREGGILTIALYPGHDGGASEAQAVESWAAALPQEMWSVLCYRFINSAARSPYLIGIE 192
Query: 266 KR 267
K+
Sbjct: 193 KK 194
>gi|16080101|ref|NP_390927.1| RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
gi|221310989|ref|ZP_03592836.1| hypothetical protein Bsubs1_16601 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221315316|ref|ZP_03597121.1| hypothetical protein BsubsN3_16507 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320233|ref|ZP_03601527.1| hypothetical protein BsubsJ_16428 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324515|ref|ZP_03605809.1| hypothetical protein BsubsS_16577 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402777204|ref|YP_006631148.1| RNA methylase [Bacillus subtilis QB928]
gi|452915114|ref|ZP_21963740.1| ftsJ-like methyltransferase family protein [Bacillus subtilis
MB73/2]
gi|81815732|sp|O34614.1|YTQB_BACSU RecName: Full=Putative rRNA methylase YtqB
gi|2293301|gb|AAC00379.1| YtqB [Bacillus subtilis]
gi|2635533|emb|CAB15027.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
gi|402482383|gb|AFQ58892.1| Putative RNA methylase [Bacillus subtilis QB928]
gi|407965889|dbj|BAM59128.1| RNA methylase [Bacillus subtilis BEST7003]
gi|452115462|gb|EME05858.1| ftsJ-like methyltransferase family protein [Bacillus subtilis
MB73/2]
Length = 194
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 99/201 (49%), Gaps = 17/201 (8%)
Query: 69 LCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL 128
L K P S L+ +AA +GD VVDAT GNG+DT + ++V + G VY
Sbjct: 3 LKKILPYSKELLKMAAG--------EGDIVVDATMGNGHDTQFLAELVGEN---GHVYAF 51
Query: 129 DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPG 186
DIQ A+ +T L + LF+ H ++ E +P T ++ A FNLGYLPG
Sbjct: 52 DIQESAVANTKERL----GDMYQARTTLFHKSHDKIAESLPPETHGKVAAAVFNLGYLPG 107
Query: 187 GDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246
GDKS+ T +T A+E I+ GLI +VVY GHP G+ E V F R L
Sbjct: 108 GDKSITTNGSSTIKAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLEFCRDLDQQTAR 167
Query: 247 CCKFQMLNRPLAPVLVFLFKR 267
+ +N+ P + ++
Sbjct: 168 VLTYGFINQQNDPPFIVAIEK 188
>gi|417923145|ref|ZP_12566617.1| MraW methylase-like family protein [Streptococcus mitis SK569]
gi|342837268|gb|EGU71464.1| MraW methylase-like family protein [Streptococcus mitis SK569]
Length = 185
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 98/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV + D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTQDDIVVDATMGNGHDTLFLAKL------AQKVYAFDIQEQALEKTQERLD 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ +L H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 62 QAGYTN----AQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITRPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 115 KLCGLLVKGGRIAIMIYYGHDGGDLEKDAVLDFVSQLNQQEYTATIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|410657108|ref|YP_006909479.1| SAM-dependent methyltransferase, MraW methylase family
[Dehalobacter sp. DCA]
gi|410660144|ref|YP_006912515.1| SAM-dependent methyltransferase, MraW methylase family
[Dehalobacter sp. CF]
gi|409019463|gb|AFV01494.1| SAM-dependent methyltransferase, MraW methylase family
[Dehalobacter sp. DCA]
gi|409022500|gb|AFV04530.1| SAM-dependent methyltransferase, MraW methylase family
[Dehalobacter sp. CF]
Length = 198
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 93/167 (55%), Gaps = 8/167 (4%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+H+++ GD V+DAT G G DTL + + V E G V+ DIQ EA++ST LL T+
Sbjct: 22 QHLIQPGDQVIDATAGRGKDTLFLAECVGPE---GRVFAFDIQEEAIQSTRELL---TAH 75
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
V LF H+ + +VP+ +R FNLGYLPG +++IT ETT A+ ++
Sbjct: 76 KMLDRVALFRESHTEIGCLVPQ--GIRAAVFNLGYLPGSSQTIITEPETTLRAVNDTLKL 133
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR 255
L+ G+I + VY GH EE + A+A LS D+ + LN+
Sbjct: 134 LVAKGVIMLTVYRGHSRSLEEANTLNAYAAELSKKDFHVLQGMYLNQ 180
>gi|387787827|ref|YP_006252895.1| SAM-dependent methyltransferase [Streptococcus pneumoniae ST556]
gi|418109617|ref|ZP_12746646.1| rRNA methylase [Streptococcus pneumoniae GA49447]
gi|418161691|ref|ZP_12798382.1| rRNA methylase [Streptococcus pneumoniae GA17328]
gi|418163998|ref|ZP_12800672.1| rRNA methylase [Streptococcus pneumoniae GA17371]
gi|418170876|ref|ZP_12807503.1| rRNA methylase [Streptococcus pneumoniae GA19451]
gi|418182259|ref|ZP_12818820.1| rRNA methylase [Streptococcus pneumoniae GA43380]
gi|418186665|ref|ZP_12823195.1| rRNA methylase [Streptococcus pneumoniae GA47360]
gi|418188884|ref|ZP_12825399.1| rRNA methylase [Streptococcus pneumoniae GA47373]
gi|419424695|ref|ZP_13964896.1| rRNA methylase [Streptococcus pneumoniae 7533-05]
gi|419426821|ref|ZP_13967004.1| rRNA methylase [Streptococcus pneumoniae 5652-06]
gi|419431058|ref|ZP_13971204.1| rRNA methylase [Streptococcus pneumoniae EU-NP05]
gi|419459504|ref|ZP_13999440.1| rRNA methylase [Streptococcus pneumoniae GA02270]
gi|421265690|ref|ZP_15716573.1| rRNA methylase [Streptococcus pneumoniae SPAR27]
gi|421291460|ref|ZP_15742201.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA56348]
gi|421293857|ref|ZP_15744581.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA56113]
gi|421300515|ref|ZP_15751186.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA19998]
gi|421302469|ref|ZP_15753134.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA17484]
gi|421309086|ref|ZP_15759715.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA62681]
gi|353784910|gb|EHD65330.1| rRNA methylase [Streptococcus pneumoniae GA49447]
gi|353831281|gb|EHE11410.1| rRNA methylase [Streptococcus pneumoniae GA17328]
gi|353832325|gb|EHE12443.1| rRNA methylase [Streptococcus pneumoniae GA17371]
gi|353837046|gb|EHE17132.1| rRNA methylase [Streptococcus pneumoniae GA19451]
gi|353850496|gb|EHE30500.1| rRNA methylase [Streptococcus pneumoniae GA43380]
gi|353853251|gb|EHE33234.1| rRNA methylase [Streptococcus pneumoniae GA47360]
gi|353856026|gb|EHE35995.1| rRNA methylase [Streptococcus pneumoniae GA47373]
gi|379137569|gb|AFC94360.1| SAM-dependent methyltransferase [Streptococcus pneumoniae ST556]
gi|379534376|gb|EHY99588.1| rRNA methylase [Streptococcus pneumoniae GA02270]
gi|379618274|gb|EHZ82949.1| rRNA methylase [Streptococcus pneumoniae 5652-06]
gi|379620595|gb|EHZ85250.1| rRNA methylase [Streptococcus pneumoniae 7533-05]
gi|379632302|gb|EHZ96878.1| rRNA methylase [Streptococcus pneumoniae EU-NP05]
gi|395868426|gb|EJG79543.1| rRNA methylase [Streptococcus pneumoniae SPAR27]
gi|395895189|gb|EJH06165.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA56113]
gi|395895754|gb|EJH06727.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA56348]
gi|395899939|gb|EJH10878.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA19998]
gi|395903283|gb|EJH14215.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA17484]
gi|395911830|gb|EJH22694.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA62681]
Length = 179
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 2 AHDFLAEVVTKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQKQALEKTQERLH 55
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ GL +L H +++ V K+ A FNLGYLP DKSVIT +TT A
Sbjct: 56 QA------GLTNAQLILQGHETLDQFVTKAKAG---IFNLGYLPSADKSVITRPQTTIEA 106
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 107 LEKLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPF 166
Query: 262 VFLFKR 267
+ + ++
Sbjct: 167 LVMIEK 172
>gi|407707267|ref|YP_006830852.1| camelysin [Bacillus thuringiensis MC28]
gi|407384952|gb|AFU15453.1| SAM-dependent methyltransferase [Bacillus thuringiensis MC28]
Length = 190
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 101/189 (53%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++GD VDAT GNG+D + ++V D G V+G DIQ EA++S++ L
Sbjct: 10 ARSLLQTAVKEGDYAVDATLGNGHDACFLAEIVGDN---GKVFGFDIQKEAIESSTIRL- 65
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 66 -----KEKKLFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+
Sbjct: 121 ISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|15902615|ref|NP_358165.1| hypothetical protein spr0571 [Streptococcus pneumoniae R6]
gi|116516252|ref|YP_816066.1| hypothetical protein SPD_0567 [Streptococcus pneumoniae D39]
gi|182683579|ref|YP_001835326.1| hypothetical protein SPCG_0609 [Streptococcus pneumoniae CGSP14]
gi|15458150|gb|AAK99375.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076828|gb|ABJ54548.1| rRNA methylase, putative [Streptococcus pneumoniae D39]
gi|182628913|gb|ACB89861.1| hypothetical protein SPCG_0609 [Streptococcus pneumoniae CGSP14]
Length = 187
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 10 AHDFLAEVVTKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQKQALEKTQERLH 63
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ GL +L H +++ V K+ A FNLGYLP DKSVIT +TT A
Sbjct: 64 QA------GLTNAQLILQGHETLDQFVTKAKAG---IFNLGYLPSADKSVITRPQTTIEA 114
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 115 LEKLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPF 174
Query: 262 VFLFKR 267
+ + ++
Sbjct: 175 LVMIEK 180
>gi|342163345|ref|YP_004767984.1| hypothetical protein SPPN_03420 [Streptococcus pseudopneumoniae
IS7493]
gi|418972626|ref|ZP_13520714.1| MraW methylase-like family protein [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|341933227|gb|AEL10124.1| hypothetical protein SPPN_03420 [Streptococcus pseudopneumoniae
IS7493]
gi|383351658|gb|EID29436.1| MraW methylase-like family protein [Streptococcus pseudopneumoniae
ATCC BAA-960]
Length = 185
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 8 AHDFLAEVVTKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQKQALEKTQERLH 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ GL +L H +++ V ++ A FNLGYLP DKSVIT +TT A
Sbjct: 62 QA------GLTNAQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 113 LEKLCSLLVKGGRIAIMIYYGHDGGDLERDAVLDFVSQLNQQEYTATIYRTLNQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|420143422|ref|ZP_14650920.1| Hypothetical protein Y7C_91218 [Lactococcus garvieae IPLA 31405]
gi|391856649|gb|EIT67188.1| Hypothetical protein Y7C_91218 [Lactococcus garvieae IPLA 31405]
Length = 179
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 95/177 (53%), Gaps = 14/177 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ GD V+DAT GNG+DT + S VY D+Q EAL ST +LL +A
Sbjct: 16 IKPGDVVIDATMGNGWDTAFL------ASLTDKVYAFDVQKEALLSTQALLQDKNLEA-- 67
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
KL H +++ V + V+ FNLGYLP DKS+IT TT AL+ + L+
Sbjct: 68 ---KLILDGHESIDKYV--TDGVKAAIFNLGYLPRTDKSIITRPSTTLRALDILKEKLLT 122
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFKR 267
G I +VVY GH GG+ E +AV A+A L W K++ LN+ P L+ + KR
Sbjct: 123 HGQIMLVVYYGHEGGQSEKDAVLAWASGLPQAQWHVMKYEPLNQIHTPPFLICIEKR 179
>gi|418102352|ref|ZP_12739428.1| rRNA methylase [Streptococcus pneumoniae NP070]
gi|419475026|ref|ZP_14014867.1| rRNA methylase [Streptococcus pneumoniae GA14688]
gi|419486137|ref|ZP_14025904.1| rRNA methylase [Streptococcus pneumoniae GA44128]
gi|353776518|gb|EHD56993.1| rRNA methylase [Streptococcus pneumoniae NP070]
gi|379561364|gb|EHZ26381.1| rRNA methylase [Streptococcus pneumoniae GA14688]
gi|379589046|gb|EHZ53886.1| rRNA methylase [Streptococcus pneumoniae GA44128]
Length = 185
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 8 AHDFLSEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQKQALEKTQERLH 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ GL +L H +++ V K+ A FNLGYLP DKSVIT +TT A
Sbjct: 62 QA------GLTNAQLILQGHETLDQFVTKAKAG---IFNLGYLPSADKSVITRPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 113 LEKLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|406831077|ref|ZP_11090671.1| FAD dependent oxidoreductase [Schlesneria paludicola DSM 18645]
Length = 565
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V++ GD V+DAT GNGYDT + + V + G VY DIQ AL T + L E
Sbjct: 392 VIQSGDVVIDATTGNGYDTHFLAEQVGQD---GRVYAFDIQQVALDRTQARL------ME 442
Query: 151 KGL--VKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
GL V L N H+ M ++P + + A FNLGYLP GDK++ T E+T+ A+ A
Sbjct: 443 AGLENVTLLNQSHANMTSLIPSAVHGHVAAIMFNLGYLPSGDKTLTTQPESTRQAIGQAA 502
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ-MLNRPLAPVLVFLF 265
+L GG++++V Y+GH GG E + V+ L ++ F + + P L FL
Sbjct: 503 TLLRRGGVMTIVAYMGHDGGNAEADIVQLTLGGLGPGEFETKAFDSQPGKKIGPRL-FLV 561
Query: 266 KR 267
KR
Sbjct: 562 KR 563
>gi|148985234|ref|ZP_01818457.1| rRNA methylase, putative [Streptococcus pneumoniae SP3-BS71]
gi|148992239|ref|ZP_01821962.1| rRNA methylase, putative [Streptococcus pneumoniae SP9-BS68]
gi|148997267|ref|ZP_01824921.1| rRNA methylase, putative [Streptococcus pneumoniae SP11-BS70]
gi|149002339|ref|ZP_01827281.1| rRNA methylase, putative [Streptococcus pneumoniae SP14-BS69]
gi|149020266|ref|ZP_01835158.1| rRNA methylase, putative [Streptococcus pneumoniae SP23-BS72]
gi|168482881|ref|ZP_02707833.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
CDC1873-00]
gi|168488333|ref|ZP_02712532.1| SAM-dependent methyltransferase [Streptococcus pneumoniae SP195]
gi|168492272|ref|ZP_02716415.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
CDC0288-04]
gi|168492810|ref|ZP_02716953.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
CDC3059-06]
gi|168575323|ref|ZP_02721259.1| SAM-dependent methyltransferase [Streptococcus pneumoniae MLV-016]
gi|221231470|ref|YP_002510622.1| rRNA methylase [Streptococcus pneumoniae ATCC 700669]
gi|225854180|ref|YP_002735692.1| SAM-dependent methyltransferase [Streptococcus pneumoniae JJA]
gi|225860645|ref|YP_002742154.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
Taiwan19F-14]
gi|237650321|ref|ZP_04524573.1| hypothetical protein SpneC1_06279 [Streptococcus pneumoniae CCRI
1974]
gi|237821694|ref|ZP_04597539.1| hypothetical protein SpneC19_05192 [Streptococcus pneumoniae CCRI
1974M2]
gi|298230021|ref|ZP_06963702.1| hypothetical protein SpneCMD_05066 [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298254125|ref|ZP_06977711.1| hypothetical protein SpneCM_00732 [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298502448|ref|YP_003724388.1| rRNA methylase [Streptococcus pneumoniae TCH8431/19A]
gi|303254765|ref|ZP_07340866.1| hypothetical protein CGSSpBS455_04863 [Streptococcus pneumoniae
BS455]
gi|303259926|ref|ZP_07345900.1| hypothetical protein CGSSp9vBS293_03943 [Streptococcus pneumoniae
SP-BS293]
gi|303261331|ref|ZP_07347279.1| hypothetical protein CGSSp14BS292_08330 [Streptococcus pneumoniae
SP14-BS292]
gi|303263997|ref|ZP_07349918.1| hypothetical protein CGSSpBS397_05302 [Streptococcus pneumoniae
BS397]
gi|303266311|ref|ZP_07352201.1| hypothetical protein CGSSpBS457_04782 [Streptococcus pneumoniae
BS457]
gi|303269776|ref|ZP_07355526.1| hypothetical protein CGSSpBS458_01919 [Streptococcus pneumoniae
BS458]
gi|307067272|ref|YP_003876238.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
gi|387757103|ref|YP_006064082.1| putative rRNA methylase [Streptococcus pneumoniae OXC141]
gi|387758928|ref|YP_006065906.1| putative rRNA methylase [Streptococcus pneumoniae INV200]
gi|415697554|ref|ZP_11456784.1| rRNA methylase family protein [Streptococcus pneumoniae 459-5]
gi|415749071|ref|ZP_11477015.1| rRNA methylase family protein [Streptococcus pneumoniae SV35]
gi|415751752|ref|ZP_11478863.1| rRNA methylase family protein [Streptococcus pneumoniae SV36]
gi|417312232|ref|ZP_12098948.1| rRNA methylase [Streptococcus pneumoniae GA04375]
gi|417686111|ref|ZP_12335389.1| rRNA methylase [Streptococcus pneumoniae GA41301]
gi|418073503|ref|ZP_12710763.1| rRNA methylase [Streptococcus pneumoniae GA11184]
gi|418075767|ref|ZP_12713008.1| rRNA methylase [Streptococcus pneumoniae GA47502]
gi|418081037|ref|ZP_12718247.1| rRNA methylase [Streptococcus pneumoniae 6735-05]
gi|418082539|ref|ZP_12719741.1| rRNA methylase [Streptococcus pneumoniae GA44288]
gi|418084738|ref|ZP_12721924.1| rRNA methylase [Streptococcus pneumoniae GA47281]
gi|418091273|ref|ZP_12728418.1| rRNA methylase [Streptococcus pneumoniae GA44452]
gi|418093501|ref|ZP_12730631.1| rRNA methylase [Streptococcus pneumoniae GA49138]
gi|418095755|ref|ZP_12732871.1| rRNA methylase [Streptococcus pneumoniae GA16531]
gi|418098028|ref|ZP_12735128.1| rRNA methylase [Streptococcus pneumoniae 6901-05]
gi|418100575|ref|ZP_12737663.1| rRNA methylase [Streptococcus pneumoniae 7286-06]
gi|418104704|ref|ZP_12741764.1| rRNA methylase [Streptococcus pneumoniae GA44500]
gi|418114147|ref|ZP_12751138.1| rRNA methylase [Streptococcus pneumoniae 5787-06]
gi|418116385|ref|ZP_12753359.1| rRNA methylase [Streptococcus pneumoniae 6963-05]
gi|418118597|ref|ZP_12755557.1| rRNA methylase [Streptococcus pneumoniae GA18523]
gi|418122929|ref|ZP_12759864.1| rRNA methylase [Streptococcus pneumoniae GA44378]
gi|418125267|ref|ZP_12762184.1| rRNA methylase [Streptococcus pneumoniae GA44511]
gi|418127514|ref|ZP_12764410.1| rRNA methylase [Streptococcus pneumoniae NP170]
gi|418129824|ref|ZP_12766708.1| rRNA methylase [Streptococcus pneumoniae GA07643]
gi|418134392|ref|ZP_12771250.1| rRNA methylase [Streptococcus pneumoniae GA11426]
gi|418136685|ref|ZP_12773528.1| rRNA methylase [Streptococcus pneumoniae GA11663]
gi|418138974|ref|ZP_12775805.1| rRNA methylase [Streptococcus pneumoniae GA13338]
gi|418141262|ref|ZP_12778075.1| rRNA methylase [Streptococcus pneumoniae GA13455]
gi|418143472|ref|ZP_12780272.1| rRNA methylase [Streptococcus pneumoniae GA13494]
gi|418145870|ref|ZP_12782655.1| rRNA methylase [Streptococcus pneumoniae GA13637]
gi|418150225|ref|ZP_12786980.1| rRNA methylase [Streptococcus pneumoniae GA14798]
gi|418159304|ref|ZP_12796007.1| rRNA methylase [Streptococcus pneumoniae GA17227]
gi|418166275|ref|ZP_12802931.1| rRNA methylase [Streptococcus pneumoniae GA17971]
gi|418168750|ref|ZP_12805396.1| rRNA methylase [Streptococcus pneumoniae GA19077]
gi|418173018|ref|ZP_12809632.1| rRNA methylase [Streptococcus pneumoniae GA41277]
gi|418175459|ref|ZP_12812057.1| rRNA methylase [Streptococcus pneumoniae GA41437]
gi|418177686|ref|ZP_12814270.1| rRNA methylase [Streptococcus pneumoniae GA41565]
gi|418180015|ref|ZP_12816588.1| rRNA methylase [Streptococcus pneumoniae GA41688]
gi|418191093|ref|ZP_12827598.1| rRNA methylase [Streptococcus pneumoniae GA47388]
gi|418193304|ref|ZP_12829797.1| rRNA methylase [Streptococcus pneumoniae GA47439]
gi|418195752|ref|ZP_12832232.1| rRNA methylase [Streptococcus pneumoniae GA47688]
gi|418199806|ref|ZP_12836253.1| rRNA methylase [Streptococcus pneumoniae GA47976]
gi|418213833|ref|ZP_12840568.1| rRNA methylase [Streptococcus pneumoniae GA54644]
gi|418216107|ref|ZP_12842831.1| rRNA methylase [Streptococcus pneumoniae Netherlands15B-37]
gi|418220581|ref|ZP_12847237.1| rRNA methylase [Streptococcus pneumoniae GA47751]
gi|418222933|ref|ZP_12849578.1| rRNA methylase [Streptococcus pneumoniae 5185-06]
gi|418227251|ref|ZP_12853871.1| rRNA methylase [Streptococcus pneumoniae 3063-00]
gi|418229394|ref|ZP_12856003.1| rRNA methylase [Streptococcus pneumoniae EU-NP01]
gi|418231738|ref|ZP_12858326.1| rRNA methylase [Streptococcus pneumoniae GA07228]
gi|418233857|ref|ZP_12860437.1| rRNA methylase [Streptococcus pneumoniae GA08780]
gi|418238229|ref|ZP_12864785.1| rRNA methylase [Streptococcus pneumoniae NorthCarolina6A-23]
gi|419422671|ref|ZP_13962890.1| rRNA methylase [Streptococcus pneumoniae GA43264]
gi|419428922|ref|ZP_13969091.1| rRNA methylase [Streptococcus pneumoniae GA11856]
gi|419435537|ref|ZP_13975633.1| rRNA methylase [Streptococcus pneumoniae 8190-05]
gi|419437617|ref|ZP_13977690.1| rRNA methylase [Streptococcus pneumoniae GA13499]
gi|419439870|ref|ZP_13979924.1| rRNA methylase [Streptococcus pneumoniae GA40410]
gi|419442147|ref|ZP_13982179.1| rRNA methylase [Streptococcus pneumoniae GA13224]
gi|419446398|ref|ZP_13986403.1| rRNA methylase [Streptococcus pneumoniae 7879-04]
gi|419449147|ref|ZP_13989144.1| rRNA methylase [Streptococcus pneumoniae 4075-00]
gi|419450639|ref|ZP_13990626.1| rRNA methylase [Streptococcus pneumoniae EU-NP02]
gi|419452952|ref|ZP_13992926.1| rRNA methylase [Streptococcus pneumoniae EU-NP03]
gi|419457868|ref|ZP_13997812.1| rRNA methylase [Streptococcus pneumoniae GA02254]
gi|419461784|ref|ZP_14001700.1| rRNA methylase [Streptococcus pneumoniae GA02714]
gi|419464159|ref|ZP_14004052.1| rRNA methylase [Streptococcus pneumoniae GA04175]
gi|419466792|ref|ZP_14006674.1| rRNA methylase [Streptococcus pneumoniae GA05248]
gi|419468529|ref|ZP_14008400.1| rRNA methylase [Streptococcus pneumoniae GA06083]
gi|419470630|ref|ZP_14010489.1| rRNA methylase [Streptococcus pneumoniae GA07914]
gi|419472710|ref|ZP_14012563.1| rRNA methylase [Streptococcus pneumoniae GA13430]
gi|419477323|ref|ZP_14017148.1| rRNA methylase [Streptococcus pneumoniae GA18068]
gi|419479507|ref|ZP_14019315.1| rRNA methylase [Streptococcus pneumoniae GA19101]
gi|419483890|ref|ZP_14023666.1| rRNA methylase [Streptococcus pneumoniae GA43257]
gi|419488581|ref|ZP_14028334.1| rRNA methylase [Streptococcus pneumoniae GA44386]
gi|419492796|ref|ZP_14032523.1| rRNA methylase [Streptococcus pneumoniae GA47210]
gi|419494953|ref|ZP_14034673.1| rRNA methylase [Streptococcus pneumoniae GA47461]
gi|419497601|ref|ZP_14037309.1| rRNA methylase [Streptococcus pneumoniae GA47522]
gi|419499198|ref|ZP_14038897.1| rRNA methylase [Streptococcus pneumoniae GA47597]
gi|419501403|ref|ZP_14041089.1| rRNA methylase [Streptococcus pneumoniae GA47628]
gi|419503481|ref|ZP_14043152.1| rRNA methylase [Streptococcus pneumoniae GA47760]
gi|419505609|ref|ZP_14045270.1| rRNA methylase [Streptococcus pneumoniae GA49194]
gi|419507732|ref|ZP_14047386.1| rRNA methylase [Streptococcus pneumoniae GA49542]
gi|419514217|ref|ZP_14053845.1| rRNA methylase [Streptococcus pneumoniae England14-9]
gi|419518471|ref|ZP_14058078.1| rRNA methylase [Streptococcus pneumoniae GA08825]
gi|419520607|ref|ZP_14060204.1| rRNA methylase family protein [Streptococcus pneumoniae GA05245]
gi|419525402|ref|ZP_14064967.1| rRNA methylase family protein [Streptococcus pneumoniae GA14373]
gi|419527501|ref|ZP_14067045.1| rRNA methylase family protein [Streptococcus pneumoniae GA17719]
gi|421206101|ref|ZP_15663165.1| rRNA methylase family protein [Streptococcus pneumoniae 2090008]
gi|421208489|ref|ZP_15665514.1| rRNA methylase family protein [Streptococcus pneumoniae 2070005]
gi|421210618|ref|ZP_15667607.1| rRNA methylase family protein [Streptococcus pneumoniae 2070035]
gi|421219852|ref|ZP_15676707.1| rRNA methylase family protein [Streptococcus pneumoniae 2070425]
gi|421222183|ref|ZP_15678977.1| rRNA methylase family protein [Streptococcus pneumoniae 2070531]
gi|421224508|ref|ZP_15681254.1| rRNA methylase family protein [Streptococcus pneumoniae 2070768]
gi|421229308|ref|ZP_15685985.1| rRNA methylase family protein [Streptococcus pneumoniae 2061376]
gi|421233666|ref|ZP_15690288.1| rRNA methylase family protein [Streptococcus pneumoniae 2061617]
gi|421235825|ref|ZP_15692426.1| rRNA methylase family protein [Streptococcus pneumoniae 2071004]
gi|421238303|ref|ZP_15694872.1| rRNA methylase family protein [Streptococcus pneumoniae 2071247]
gi|421240224|ref|ZP_15696773.1| rRNA methylase family protein [Streptococcus pneumoniae 2080913]
gi|421244496|ref|ZP_15700999.1| rRNA methylase family protein [Streptococcus pneumoniae 2081685]
gi|421248971|ref|ZP_15705434.1| rRNA methylase family protein [Streptococcus pneumoniae 2082239]
gi|421267868|ref|ZP_15718740.1| rRNA methylase [Streptococcus pneumoniae SPAR95]
gi|421270079|ref|ZP_15720936.1| rRNA methylase [Streptococcus pneumoniae SPAR48]
gi|421272301|ref|ZP_15723148.1| rRNA methylase [Streptococcus pneumoniae SPAR55]
gi|421278431|ref|ZP_15729241.1| rRNA methylase [Streptococcus pneumoniae GA17301]
gi|421280642|ref|ZP_15731441.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA04672]
gi|421287152|ref|ZP_15737918.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA58771]
gi|421297265|ref|ZP_15747968.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA58581]
gi|421298117|ref|ZP_15748807.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA60080]
gi|421306830|ref|ZP_15757476.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA60132]
gi|421311403|ref|ZP_15762012.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA58981]
gi|421313841|ref|ZP_15764431.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA47562]
gi|147756967|gb|EDK64007.1| rRNA methylase, putative [Streptococcus pneumoniae SP11-BS70]
gi|147759654|gb|EDK66645.1| rRNA methylase, putative [Streptococcus pneumoniae SP14-BS69]
gi|147922432|gb|EDK73551.1| rRNA methylase, putative [Streptococcus pneumoniae SP3-BS71]
gi|147928865|gb|EDK79877.1| rRNA methylase, putative [Streptococcus pneumoniae SP9-BS68]
gi|147930568|gb|EDK81550.1| rRNA methylase, putative [Streptococcus pneumoniae SP23-BS72]
gi|172043844|gb|EDT51890.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
CDC1873-00]
gi|183572979|gb|EDT93507.1| SAM-dependent methyltransferase [Streptococcus pneumoniae SP195]
gi|183573546|gb|EDT94074.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
CDC0288-04]
gi|183577040|gb|EDT97568.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
CDC3059-06]
gi|183578412|gb|EDT98940.1| SAM-dependent methyltransferase [Streptococcus pneumoniae MLV-016]
gi|220673930|emb|CAR68439.1| putative rRNA methylase [Streptococcus pneumoniae ATCC 700669]
gi|225723979|gb|ACO19832.1| SAM-dependent methyltransferase [Streptococcus pneumoniae JJA]
gi|225727226|gb|ACO23077.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238043|gb|ADI69174.1| rRNA methylase [Streptococcus pneumoniae TCH8431/19A]
gi|301799692|emb|CBW32257.1| putative rRNA methylase [Streptococcus pneumoniae OXC141]
gi|301801517|emb|CBW34209.1| putative rRNA methylase [Streptococcus pneumoniae INV200]
gi|302598305|gb|EFL65350.1| hypothetical protein CGSSpBS455_04863 [Streptococcus pneumoniae
BS455]
gi|302637465|gb|EFL67952.1| hypothetical protein CGSSp14BS292_08330 [Streptococcus pneumoniae
SP14-BS292]
gi|302638845|gb|EFL69306.1| hypothetical protein CGSSpBS293_03943 [Streptococcus pneumoniae
SP-BS293]
gi|302640698|gb|EFL71095.1| hypothetical protein CGSSpBS458_01919 [Streptococcus pneumoniae
BS458]
gi|302644122|gb|EFL74379.1| hypothetical protein CGSSpBS457_04782 [Streptococcus pneumoniae
BS457]
gi|302646402|gb|EFL76628.1| hypothetical protein CGSSpBS397_05302 [Streptococcus pneumoniae
BS397]
gi|306408809|gb|ADM84236.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
gi|327390384|gb|EGE88725.1| rRNA methylase [Streptococcus pneumoniae GA04375]
gi|332075948|gb|EGI86414.1| rRNA methylase [Streptococcus pneumoniae GA41301]
gi|353750917|gb|EHD31553.1| rRNA methylase [Streptococcus pneumoniae GA47502]
gi|353751080|gb|EHD31713.1| rRNA methylase [Streptococcus pneumoniae GA11184]
gi|353751776|gb|EHD32407.1| rRNA methylase [Streptococcus pneumoniae 6735-05]
gi|353757976|gb|EHD38569.1| rRNA methylase [Streptococcus pneumoniae GA44288]
gi|353759973|gb|EHD40555.1| rRNA methylase [Streptococcus pneumoniae GA47281]
gi|353766646|gb|EHD47186.1| rRNA methylase [Streptococcus pneumoniae GA44452]
gi|353767066|gb|EHD47605.1| rRNA methylase [Streptococcus pneumoniae GA49138]
gi|353770393|gb|EHD50906.1| rRNA methylase [Streptococcus pneumoniae 6901-05]
gi|353772535|gb|EHD53041.1| rRNA methylase [Streptococcus pneumoniae GA16531]
gi|353773284|gb|EHD53783.1| rRNA methylase [Streptococcus pneumoniae 7286-06]
gi|353779138|gb|EHD59604.1| rRNA methylase [Streptococcus pneumoniae GA44500]
gi|353787445|gb|EHD67847.1| rRNA methylase [Streptococcus pneumoniae 5787-06]
gi|353790223|gb|EHD70606.1| rRNA methylase [Streptococcus pneumoniae 6963-05]
gi|353792182|gb|EHD72555.1| rRNA methylase [Streptococcus pneumoniae GA18523]
gi|353798402|gb|EHD78732.1| rRNA methylase [Streptococcus pneumoniae GA44378]
gi|353799711|gb|EHD80028.1| rRNA methylase [Streptococcus pneumoniae GA44511]
gi|353799975|gb|EHD80289.1| rRNA methylase [Streptococcus pneumoniae NP170]
gi|353803116|gb|EHD83408.1| rRNA methylase [Streptococcus pneumoniae GA07643]
gi|353805513|gb|EHD85787.1| rRNA methylase [Streptococcus pneumoniae GA13455]
gi|353809213|gb|EHD89473.1| rRNA methylase [Streptococcus pneumoniae GA13494]
gi|353815808|gb|EHD96021.1| rRNA methylase [Streptococcus pneumoniae GA13637]
gi|353817346|gb|EHD97550.1| rRNA methylase [Streptococcus pneumoniae GA14798]
gi|353825173|gb|EHE05339.1| rRNA methylase [Streptococcus pneumoniae GA17227]
gi|353829871|gb|EHE10001.1| rRNA methylase [Streptococcus pneumoniae GA17971]
gi|353836669|gb|EHE16757.1| rRNA methylase [Streptococcus pneumoniae GA19077]
gi|353839717|gb|EHE19791.1| rRNA methylase [Streptococcus pneumoniae GA41277]
gi|353844019|gb|EHE24063.1| rRNA methylase [Streptococcus pneumoniae GA41437]
gi|353844460|gb|EHE24503.1| rRNA methylase [Streptococcus pneumoniae GA41565]
gi|353846343|gb|EHE26376.1| rRNA methylase [Streptococcus pneumoniae GA41688]
gi|353858692|gb|EHE38652.1| rRNA methylase [Streptococcus pneumoniae GA47388]
gi|353860027|gb|EHE39974.1| rRNA methylase [Streptococcus pneumoniae GA47439]
gi|353862279|gb|EHE42212.1| rRNA methylase [Streptococcus pneumoniae GA47688]
gi|353866484|gb|EHE46386.1| rRNA methylase [Streptococcus pneumoniae GA47976]
gi|353871116|gb|EHE50987.1| rRNA methylase [Streptococcus pneumoniae GA54644]
gi|353873158|gb|EHE53019.1| rRNA methylase [Streptococcus pneumoniae Netherlands15B-37]
gi|353877450|gb|EHE57293.1| rRNA methylase [Streptococcus pneumoniae GA47751]
gi|353880205|gb|EHE60021.1| rRNA methylase [Streptococcus pneumoniae 5185-06]
gi|353883624|gb|EHE63430.1| rRNA methylase [Streptococcus pneumoniae 3063-00]
gi|353888044|gb|EHE67820.1| rRNA methylase [Streptococcus pneumoniae GA07228]
gi|353889296|gb|EHE69067.1| rRNA methylase [Streptococcus pneumoniae GA08780]
gi|353890533|gb|EHE70296.1| rRNA methylase [Streptococcus pneumoniae EU-NP01]
gi|353894652|gb|EHE74393.1| rRNA methylase [Streptococcus pneumoniae NorthCarolina6A-23]
gi|353902613|gb|EHE78141.1| rRNA methylase [Streptococcus pneumoniae GA11663]
gi|353902982|gb|EHE78508.1| rRNA methylase [Streptococcus pneumoniae GA11426]
gi|353905811|gb|EHE81227.1| rRNA methylase [Streptococcus pneumoniae GA13338]
gi|379531741|gb|EHY96975.1| rRNA methylase [Streptococcus pneumoniae GA02254]
gi|379534675|gb|EHY99885.1| rRNA methylase [Streptococcus pneumoniae GA02714]
gi|379539378|gb|EHZ04557.1| rRNA methylase [Streptococcus pneumoniae GA04175]
gi|379540325|gb|EHZ05498.1| rRNA methylase [Streptococcus pneumoniae GA13499]
gi|379540510|gb|EHZ05682.1| rRNA methylase family protein [Streptococcus pneumoniae GA05245]
gi|379543505|gb|EHZ08654.1| rRNA methylase [Streptococcus pneumoniae GA05248]
gi|379545346|gb|EHZ10485.1| rRNA methylase [Streptococcus pneumoniae GA07914]
gi|379546632|gb|EHZ11770.1| rRNA methylase [Streptococcus pneumoniae GA06083]
gi|379552182|gb|EHZ17272.1| rRNA methylase [Streptococcus pneumoniae GA11856]
gi|379553612|gb|EHZ18696.1| rRNA methylase [Streptococcus pneumoniae GA13430]
gi|379554671|gb|EHZ19747.1| rRNA methylase [Streptococcus pneumoniae GA13224]
gi|379559793|gb|EHZ24820.1| rRNA methylase family protein [Streptococcus pneumoniae GA14373]
gi|379566446|gb|EHZ31434.1| rRNA methylase family protein [Streptococcus pneumoniae GA17719]
gi|379566705|gb|EHZ31692.1| rRNA methylase [Streptococcus pneumoniae GA18068]
gi|379573161|gb|EHZ38117.1| rRNA methylase [Streptococcus pneumoniae GA19101]
gi|379580481|gb|EHZ45371.1| rRNA methylase [Streptococcus pneumoniae GA40410]
gi|379583401|gb|EHZ48278.1| rRNA methylase [Streptococcus pneumoniae GA43257]
gi|379590002|gb|EHZ54841.1| rRNA methylase [Streptococcus pneumoniae GA43264]
gi|379590696|gb|EHZ55534.1| rRNA methylase [Streptococcus pneumoniae GA44386]
gi|379594834|gb|EHZ59643.1| rRNA methylase [Streptococcus pneumoniae GA47210]
gi|379597317|gb|EHZ62120.1| rRNA methylase [Streptococcus pneumoniae GA47461]
gi|379599865|gb|EHZ64647.1| rRNA methylase [Streptococcus pneumoniae GA47522]
gi|379601764|gb|EHZ66536.1| rRNA methylase [Streptococcus pneumoniae GA47628]
gi|379602252|gb|EHZ67023.1| rRNA methylase [Streptococcus pneumoniae GA47597]
gi|379607523|gb|EHZ72269.1| rRNA methylase [Streptococcus pneumoniae GA49194]
gi|379609079|gb|EHZ73820.1| rRNA methylase [Streptococcus pneumoniae GA47760]
gi|379612577|gb|EHZ77294.1| rRNA methylase [Streptococcus pneumoniae GA49542]
gi|379613938|gb|EHZ78648.1| rRNA methylase [Streptococcus pneumoniae 7879-04]
gi|379617206|gb|EHZ81899.1| rRNA methylase [Streptococcus pneumoniae 8190-05]
gi|379624205|gb|EHZ88838.1| rRNA methylase [Streptococcus pneumoniae 4075-00]
gi|379624538|gb|EHZ89169.1| rRNA methylase [Streptococcus pneumoniae EU-NP02]
gi|379627536|gb|EHZ92148.1| rRNA methylase [Streptococcus pneumoniae EU-NP03]
gi|379638707|gb|EIA03252.1| rRNA methylase [Streptococcus pneumoniae England14-9]
gi|379641450|gb|EIA05985.1| rRNA methylase [Streptococcus pneumoniae GA08825]
gi|381309448|gb|EIC50281.1| rRNA methylase family protein [Streptococcus pneumoniae SV36]
gi|381317365|gb|EIC58090.1| rRNA methylase family protein [Streptococcus pneumoniae SV35]
gi|381319152|gb|EIC59868.1| rRNA methylase family protein [Streptococcus pneumoniae 459-5]
gi|395574988|gb|EJG35560.1| rRNA methylase family protein [Streptococcus pneumoniae 2070035]
gi|395576959|gb|EJG37513.1| rRNA methylase family protein [Streptococcus pneumoniae 2070005]
gi|395577181|gb|EJG37726.1| rRNA methylase family protein [Streptococcus pneumoniae 2090008]
gi|395589507|gb|EJG49825.1| rRNA methylase family protein [Streptococcus pneumoniae 2070531]
gi|395589927|gb|EJG50242.1| rRNA methylase family protein [Streptococcus pneumoniae 2070425]
gi|395591844|gb|EJG52139.1| rRNA methylase family protein [Streptococcus pneumoniae 2070768]
gi|395598293|gb|EJG58498.1| rRNA methylase family protein [Streptococcus pneumoniae 2061376]
gi|395602563|gb|EJG62705.1| rRNA methylase family protein [Streptococcus pneumoniae 2061617]
gi|395602890|gb|EJG63031.1| rRNA methylase family protein [Streptococcus pneumoniae 2071247]
gi|395604744|gb|EJG64876.1| rRNA methylase family protein [Streptococcus pneumoniae 2071004]
gi|395609782|gb|EJG69867.1| rRNA methylase family protein [Streptococcus pneumoniae 2080913]
gi|395610154|gb|EJG70233.1| rRNA methylase family protein [Streptococcus pneumoniae 2081685]
gi|395615600|gb|EJG75616.1| rRNA methylase family protein [Streptococcus pneumoniae 2082239]
gi|395870731|gb|EJG81844.1| rRNA methylase [Streptococcus pneumoniae SPAR48]
gi|395871292|gb|EJG82398.1| rRNA methylase [Streptococcus pneumoniae SPAR95]
gi|395877860|gb|EJG88929.1| rRNA methylase [Streptococcus pneumoniae SPAR55]
gi|395881803|gb|EJG92851.1| rRNA methylase [Streptococcus pneumoniae GA17301]
gi|395883999|gb|EJG95041.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA04672]
gi|395889561|gb|EJH00568.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA58771]
gi|395892839|gb|EJH03829.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA58581]
gi|395903620|gb|EJH14548.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA60080]
gi|395908793|gb|EJH19670.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA60132]
gi|395912630|gb|EJH23488.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA58981]
gi|395914341|gb|EJH25185.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA47562]
gi|429317533|emb|CCP37317.1| putative rRNA methylase [Streptococcus pneumoniae SPN034156]
gi|429319075|emb|CCP32310.1| putative rRNA methylase [Streptococcus pneumoniae SPN034183]
gi|429320890|emb|CCP34284.1| putative rRNA methylase [Streptococcus pneumoniae SPN994039]
gi|429322710|emb|CCP30325.1| putative rRNA methylase [Streptococcus pneumoniae SPN994038]
Length = 185
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 8 AHDFLAEVVTKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQKQALEKTQERLH 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ GL +L H +++ V K+ A FNLGYLP DKSVIT +TT A
Sbjct: 62 QA------GLTNAQLILQGHETLDQFVTKAKAG---IFNLGYLPSADKSVITRPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 113 LEKLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|442804555|ref|YP_007372704.1| putative rRNA methylase [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740405|gb|AGC68094.1| putative rRNA methylase [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 187
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 83/144 (57%), Gaps = 14/144 (9%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
K VVR+GDTV+DATCGNG+DTL + +V D +G VY DIQ EAL T L
Sbjct: 15 KKVVREGDTVIDATCGNGHDTLFLAGLVGD---SGKVYAFDIQKEALGITRKRL------ 65
Query: 149 AEKGLVK---LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA 205
E G++ L H M V + V+LV FNLGY PGGD S+ T ETT A+E A
Sbjct: 66 LENGMLHRCFLIPDGHQNMHRYV--NQPVKLVLFNLGYRPGGDHSICTRGETTIKAVETA 123
Query: 206 ERILIPGGLISMVVYVGHPGGREE 229
+L+ GLI +V+Y G G EE
Sbjct: 124 LNLLVVHGLIVLVIYHGGDTGFEE 147
>gi|385839611|ref|YP_005877241.1| MraW methylase family SAM-dependent methyltransferase [Lactococcus
lactis subsp. cremoris A76]
gi|358750839|gb|AEU41818.1| SAM-dependent methyltransferase, MraW methylase family [Lactococcus
lactis subsp. cremoris A76]
Length = 211
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 109/209 (52%), Gaps = 31/209 (14%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + K ++ D VVDAT GNGYDTL + ++ A VY D+Q AL++T L+
Sbjct: 8 AHWMLKDIINVDDVVVDATMGNGYDTLFLAELGAK------VYAFDVQEAALEATEKRLE 61
Query: 144 ---------KTTSKAEKGLVKL----FN----------MCHSRMEEIVPK-STAVRLVAF 179
K S ++ + L FN + + EE++ + V+ F
Sbjct: 62 NKAIKTQIMKKASPVDQSTLSLKEQTFNEVSMTEPSVDLILAGHEELINYVQSPVKAAIF 121
Query: 180 NLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARS 239
NLGYLP DK+++T +ETT AL + +L+ GG I++V+Y GH GG EE +AV +A +
Sbjct: 122 NLGYLPKTDKNIVTRAETTLSALSSLTDLLVVGGRIALVIYYGHEGGEEEKKAVINWAST 181
Query: 240 LSVDDWICCKFQMLNR-PLAPVLVFLFKR 267
L DW + LN+ P+LV + KR
Sbjct: 182 LPQKDWEVTSYAPLNQIHTPPILVLIEKR 210
>gi|375307707|ref|ZP_09772994.1| SAM-dependent methyltransferase [Paenibacillus sp. Aloe-11]
gi|375080038|gb|EHS58259.1| SAM-dependent methyltransferase [Paenibacillus sp. Aloe-11]
Length = 193
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 103/182 (56%), Gaps = 12/182 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK--A 149
V+ GD VDAT G G DTL + K G VYG DIQ EAL+ L++ TS A
Sbjct: 18 VQPGDAAVDATVGTGADTLFLAKAAGKR---GRVYGFDIQQEALQLARRRLEENTSPSLA 74
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLP--GGDKSVITTSETTKMALEAA 205
E V L H +M E VP + ++ A FNLGYLP G D SVIT +++T ALEAA
Sbjct: 75 E---VTLLLQGHEQMREAVPGNLHGKVAAVMFNLGYLPSEGADPSVITHTDSTLAALEAA 131
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
++L P G+++ V+Y GH GG EE EAV +A +L V ++ L R +P LV +
Sbjct: 132 LQLLRPRGILTAVLYPGHAGGSEEAEAVLQWASALPVSIGQSIIYRQLQRDTSPYLVAVE 191
Query: 266 KR 267
K+
Sbjct: 192 KK 193
>gi|321312586|ref|YP_004204873.1| putative RNA methylase [Bacillus subtilis BSn5]
gi|418031758|ref|ZP_12670242.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|320018860|gb|ADV93846.1| putative RNA methylase [Bacillus subtilis BSn5]
gi|351471610|gb|EHA31728.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str.
SC-8]
Length = 194
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 97/201 (48%), Gaps = 17/201 (8%)
Query: 69 LCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL 128
L K P S L+ +AA +GD VVDAT GNG+DT + ++V + G VY
Sbjct: 3 LKKILPYSKELLKMAAG--------EGDIVVDATMGNGHDTQFLAELVGEN---GHVYAF 51
Query: 129 DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPG 186
DIQ A+ +T L + LF H ++ E +P T ++ A FNLGYLPG
Sbjct: 52 DIQESAVANTKERL----GDMYQARTTLFQKSHDKIAESLPPETHGKVAAAVFNLGYLPG 107
Query: 187 GDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246
GDKS+ T +T A+E I+ GLI +VVY GHP G+ E V F R L
Sbjct: 108 GDKSITTNGSSTIKAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLEFCRDLDQQSAR 167
Query: 247 CCKFQMLNRPLAPVLVFLFKR 267
+ N+ P + ++
Sbjct: 168 VLTYGFFNQQNDPPFIVAIEK 188
>gi|423388936|ref|ZP_17366162.1| hypothetical protein ICG_00784 [Bacillus cereus BAG1X1-3]
gi|401643011|gb|EJS60717.1| hypothetical protein ICG_00784 [Bacillus cereus BAG1X1-3]
Length = 190
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 104/199 (52%), Gaps = 22/199 (11%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TL+ A V++GD +DAT GNG+DT + ++V D G V+G DIQ E
Sbjct: 8 PFARTLLQTA--------VKEGDYAIDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKE 56
Query: 134 ALKSTSSLLDKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGD 188
A++S++ L EK L + L + H + ++P+ ++ FNLGYLPGGD
Sbjct: 57 AIESSTIRL------KEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGD 110
Query: 189 KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
K ++T +T A+E ++ P G+I +V+Y GHP G+ E +AV F L
Sbjct: 111 KHIVTKPNSTLSAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFTEELDQKQAHVL 170
Query: 249 KFQMLNRPLAPVLVFLFKR 267
++ +N+ P + ++
Sbjct: 171 RYGFINQQNNPPFIVAIEK 189
>gi|407477958|ref|YP_006791835.1| rRNA methylase [Exiguobacterium antarcticum B7]
gi|407062037|gb|AFS71227.1| rRNA methylase [Exiguobacterium antarcticum B7]
Length = 196
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 93/178 (52%), Gaps = 7/178 (3%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+ +GD VVD T GNG+DT + + V +G V D+Q +A++ T L
Sbjct: 17 VIHEGDCVVDMTAGNGHDTHFLAERVG---PSGRVIAFDVQEQAIEETKRRLHAAHVSE- 72
Query: 151 KGLVKLFNMCHSRM-EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V L++ H + + + +R FNLGYLPG DKSV TT E T AL A +L
Sbjct: 73 --WVDLYHESHIHVGARLFDEQRPIRAGVFNLGYLPGSDKSVTTTGEETLEALRALLPVL 130
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+PGGLI +V+Y GH GR+E +AV L D+ +++ LN+ P + ++
Sbjct: 131 VPGGLIVLVIYHGHLEGRKERDAVLEHVSLLPQQDYAVLQYRFLNQQNNPPFIVAIEK 188
>gi|389572114|ref|ZP_10162201.1| ytqB [Bacillus sp. M 2-6]
gi|388428138|gb|EIL85936.1| ytqB [Bacillus sp. M 2-6]
Length = 192
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 96/177 (54%), Gaps = 10/177 (5%)
Query: 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG 152
+KGD V+DAT GNG+DT + +V + G V+ D+Q EA++ TS L +
Sbjct: 19 QKGDIVIDATMGNGHDTRYLADLVGRD---GQVFAFDVQKEAIEQTSIRLGEHYPN---- 71
Query: 153 LVKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V L + H ++ E +P + FNLGYLPGGDK+V T + TT A++ L
Sbjct: 72 -VHLIHDGHEQLAEHLPADAYGHISGAVFNLGYLPGGDKTVTTQAHTTIEAIKQLMDWLK 130
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
PGGLI +V+Y GHP G++E + + + ++L ++ +Q +N P V ++
Sbjct: 131 PGGLIVLVIYHGHPEGKKEKDILLDYCKTLHHEEVQVISYQYMNIQNDPPFVVAIEK 187
>gi|418152401|ref|ZP_12789141.1| rRNA methylase [Streptococcus pneumoniae GA16121]
gi|353819046|gb|EHD99244.1| rRNA methylase [Streptococcus pneumoniae GA16121]
Length = 174
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L +
Sbjct: 4 VVTKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQKQALEKTQERLHQA----- 52
Query: 151 KGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
GL +L H +++ V K+ A FNLGYLP DKSVIT +TT ALE +
Sbjct: 53 -GLTNAQLILQGHETLDQFVTKAKAG---IFNLGYLPSADKSVITRPQTTIEALEKLCGL 108
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P + + ++
Sbjct: 109 LVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPFLVMIEK 167
>gi|229019986|ref|ZP_04176776.1| hypothetical protein bcere0030_44840 [Bacillus cereus AH1273]
gi|229026221|ref|ZP_04182581.1| hypothetical protein bcere0029_44990 [Bacillus cereus AH1272]
gi|228735067|gb|EEL85702.1| hypothetical protein bcere0029_44990 [Bacillus cereus AH1272]
gi|228741307|gb|EEL91517.1| hypothetical protein bcere0030_44840 [Bacillus cereus AH1273]
Length = 177
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 14/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V++GD +DAT GNG+DT + ++V D G V+G DIQ EA++S++ L EK
Sbjct: 5 VKEGDYAIDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRL------KEK 55
Query: 152 GLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T A+E
Sbjct: 56 ELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNSTLSAIEQLL 115
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
++ P G+I +V+Y GHP G+ E +AV F L ++ +N+ P + +
Sbjct: 116 EVMAPEGIIVLVIYHGHPEGQVERDAVLKFTEELDQKQAHVLRYGFINQQNNPPFIVAIE 175
Query: 267 R 267
+
Sbjct: 176 K 176
>gi|229087300|ref|ZP_04219442.1| hypothetical protein bcere0022_38710 [Bacillus cereus Rock3-44]
gi|228696002|gb|EEL48845.1| hypothetical protein bcere0022_38710 [Bacillus cereus Rock3-44]
Length = 177
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 100/181 (55%), Gaps = 14/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V +GD VDAT GNG+DT + ++V + G V+G DIQ EA+++++ L EK
Sbjct: 5 VTEGDYAVDATLGNGHDTCFLAEIVGEN---GKVFGFDIQKEAIENSTVRL------KEK 55
Query: 152 GLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
G+ + L + H + +++P+ ++ FNLGYLPGGDK ++T +T A+E
Sbjct: 56 GVEERTVLVHDSHDTLLDVLPEEATGKVTGAIFNLGYLPGGDKHIVTKPNSTIAAIEQLL 115
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
++ P G+I +V+Y GHP G+ E +AV FA L ++ +N+ P + +
Sbjct: 116 EVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKRAHVLRYGFINQQNNPPFIVAIE 175
Query: 267 R 267
+
Sbjct: 176 K 176
>gi|423597951|ref|ZP_17573951.1| hypothetical protein III_00753 [Bacillus cereus VD078]
gi|401238153|gb|EJR44595.1| hypothetical protein III_00753 [Bacillus cereus VD078]
Length = 190
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V++G+ VDAT GNG+DT + ++V D G V+G DIQ EA++S++ L
Sbjct: 10 ARSLLQTAVKEGNYAVDATLGNGHDTCFLAEIVGDN---GKVFGFDIQKEAIESSTIRL- 65
Query: 144 KTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETT 198
EK L + L + H + ++P+ ++ FNLGYLPGGDK ++T +T
Sbjct: 66 -----KEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGGDKHIVTKPNST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +V+Y GHP G+ E +AV FA L + ++ +N+
Sbjct: 121 LSAIEQLLGVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKEAHVLRYGFINQQNN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIVAIEK 189
>gi|418976224|ref|ZP_13524108.1| MraW methylase-like family protein [Streptococcus mitis SK575]
gi|383351785|gb|EID29553.1| MraW methylase-like family protein [Streptococcus mitis SK575]
Length = 187
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 10 AHDFLAEVVTKDDIVVDATMGNGHDTLFLAKL------AKHVYAFDIQEQALEKTQERLH 63
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ GL +L H + + V ++ A FNLGYLP DKSVIT +TT A
Sbjct: 64 QA------GLTNAQLILQGHETLAQFVTEAKAG---IFNLGYLPSADKSVITRPQTTIEA 114
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 115 LEKLCHLLVKGGRIAIMIYYGHNGGDLERDAVLDFVSQLNQQEYTAAIYRTLNQVNNPPF 174
Query: 262 VFLFKR 267
+ + ++
Sbjct: 175 LVMIEK 180
>gi|168487256|ref|ZP_02711764.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
CDC1087-00]
gi|418184433|ref|ZP_12820981.1| rRNA methylase [Streptococcus pneumoniae GA47283]
gi|419510173|ref|ZP_14049817.1| rRNA methylase [Streptococcus pneumoniae NP141]
gi|421212668|ref|ZP_15669630.1| rRNA methylase family protein [Streptococcus pneumoniae 2070108]
gi|421214856|ref|ZP_15671787.1| rRNA methylase family protein [Streptococcus pneumoniae 2070109]
gi|183569859|gb|EDT90387.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
CDC1087-00]
gi|353852031|gb|EHE32021.1| rRNA methylase [Streptococcus pneumoniae GA47283]
gi|379633366|gb|EHZ97935.1| rRNA methylase [Streptococcus pneumoniae NP141]
gi|395581075|gb|EJG41548.1| rRNA methylase family protein [Streptococcus pneumoniae 2070108]
gi|395582415|gb|EJG42877.1| rRNA methylase family protein [Streptococcus pneumoniae 2070109]
Length = 185
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKKVYAFDIQKQALEKTQERLH 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ GL +L H +++ V K+ A FNLGYLP DKSVIT +TT A
Sbjct: 62 QA------GLTNAQLILQGHETLDQFVTKAKAG---IFNLGYLPSADKSVITRPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 113 LEKLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|373859713|ref|ZP_09602438.1| rRNA methylase [Bacillus sp. 1NLA3E]
gi|372450569|gb|EHP24055.1| rRNA methylase [Bacillus sp. 1NLA3E]
Length = 195
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 97/183 (53%), Gaps = 8/183 (4%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K V GD VDAT GNG+DT + ++V + G VYG DIQ A+KST L + +
Sbjct: 13 LLKLAVGDGDIAVDATIGNGHDTAFLAELVGQK---GKVYGFDIQGAAVKSTKLRL-QNS 68
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETTKMALEA 204
AE + LF+ H + +P ++ FNLGYLPGGDKS++T S TT AL+
Sbjct: 69 GLAENAV--LFHTGHEHILASIPNDHFGKISGAIFNLGYLPGGDKSIVTKSTTTISALKQ 126
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
I+ P G+I +V+Y GH G E + + + L ++Q +N+ +P +
Sbjct: 127 LLEIMAPEGIIVLVIYHGHQDGDHERDDLLQYVVELDQKKAHVLQYQFINQINSPPFIIA 186
Query: 265 FKR 267
++
Sbjct: 187 IEK 189
>gi|384176636|ref|YP_005558021.1| hypothetical protein I33_3106 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349595860|gb|AEP92047.1| conserved protein YtqB [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 194
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 99/201 (49%), Gaps = 17/201 (8%)
Query: 69 LCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL 128
L K P S L+ +AA +GD VVDAT GNG+DT + ++V + G VY
Sbjct: 3 LKKILPYSKELLKMAAG--------EGDIVVDATMGNGHDTQFLAELVGEN---GHVYAF 51
Query: 129 DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPG 186
DIQ A+ +T L + LF+ H ++ E +P T ++ A FNLGYLPG
Sbjct: 52 DIQESAVANTKERLGDMF----QARTTLFHKNHDKIAESLPPETHGKVAAAVFNLGYLPG 107
Query: 187 GDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246
GDKS+ T +T A+E I+ GLI +VVY GHP G+ E V F R L
Sbjct: 108 GDKSITTNGSSTIKAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLEFCRDLDQQTAR 167
Query: 247 CCKFQMLNRPLAPVLVFLFKR 267
+ +N+ P + ++
Sbjct: 168 VLTYGFINQQNDPPFIVAIEK 188
>gi|336114739|ref|YP_004569506.1| rRNA methylase [Bacillus coagulans 2-6]
gi|335368169|gb|AEH54120.1| putative rRNA methylase [Bacillus coagulans 2-6]
Length = 190
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 98/181 (54%), Gaps = 14/181 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + + V++G +DAT GNG+DT+ + K V +G V+ DIQ EA+K T L+
Sbjct: 10 AHSLLEKAVKEGSFAIDATAGNGHDTVFLAKRVG---KSGKVFAFDIQPEAVKRTKERLE 66
Query: 144 KTTSKAEKGLV---KLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETT 198
K +GLV +LF H E +P S ++ FNLGYLPG DK+VIT E+T
Sbjct: 67 K------EGLVTRAELFCTGHEHAGECIPASLHGKISGAVFNLGYLPGSDKTVITRPEST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
AL +L GG+I++VVY GH GG E + + + + L +++ LN+
Sbjct: 121 IAALRQIFPMLETGGIIAVVVYPGHEGGAYERDRLLDYVKQLDQKKVHVLRYEFLNQANH 180
Query: 259 P 259
P
Sbjct: 181 P 181
>gi|449019544|dbj|BAM82946.1| similar to rRNA methylase [Cyanidioschyzon merolae strain 10D]
Length = 306
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 125/259 (48%), Gaps = 45/259 (17%)
Query: 42 RFSSSCCSAAS--FQQKQSCSTNNCTPLPLCKDSPLSGTLITIAANGVWKHVVRKGDTVV 99
R+S CS Q++ C+ P PLC L T A+ W+ V+ GD V+
Sbjct: 34 RYSRPGCSRVPRVVQRRPRCTE----PPPLCSAHHLEKN--TQLAHTYWRSVLEPGDMVL 87
Query: 100 DATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA-LKSTSSLLDKTTSK---------- 148
DATCGNG+DTL + + + + G + LDIQ +A +++ + L+D S+
Sbjct: 88 DATCGNGHDTLALAEYIGAPVT-GTLIALDIQDKAVMRTRNRLVDMFQSRFRSTELHIHS 146
Query: 149 ------------AEKGLV---KLF-------NMCHSRMEEIVPKSTAVRLVAFNLGYLPG 186
E G + + F +M S + ++ + T ++ A+NLGYLPG
Sbjct: 147 EYTQGRLRCRLWTENGFICELRQFPHEQFQRDMLDSWLADVKARPTWFKVAAYNLGYLPG 206
Query: 187 --GDKSVITTSETTKMALEAAERILIP-GGLISMVVYVGHPGGREELEAVEAFARSLSVD 243
D+S+ T ++TT +L+ E ++ P GLIS+ Y GH GG E AV +A++L
Sbjct: 207 LDSDRSIRTRADTTIKSLKLLEGLIAPREGLISVSCYTGHDGGAAEGAAVMDWAQALDAS 266
Query: 244 DWICCKFQMLNRPLAPVLV 262
W + LNR AP LV
Sbjct: 267 QWTAVAHRWLNRRQAPSLV 285
>gi|414075266|ref|YP_007000483.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413975186|gb|AFW92650.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 201
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 105/204 (51%), Gaps = 31/204 (15%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD----- 143
K ++ D VVDAT GNGYDTL + ++ A VY D+Q AL++T L+
Sbjct: 3 KDIINVDDVVVDATMGNGYDTLFLAELGAK------VYAFDVQEAALEATEKRLENKAIK 56
Query: 144 ----KTTSKAEKGLVKL----FN----------MCHSRMEEIVPK-STAVRLVAFNLGYL 184
K S ++ + L FN + + EE++ + V+ FNLGYL
Sbjct: 57 TQIMKKASPVDQSTLSLKEQTFNEVSMTEPSVDLILAGHEELINYVQSPVKAAIFNLGYL 116
Query: 185 PGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDD 244
P DK+++T +ETT AL + +L+ GG I++V+Y GH GG EE AV +A +L D
Sbjct: 117 PKTDKNIVTRAETTLSALSSLTDLLVVGGRIALVIYYGHEGGEEEKNAVINWASTLPQKD 176
Query: 245 WICCKFQMLNR-PLAPVLVFLFKR 267
W + LN+ P+LV + KR
Sbjct: 177 WEVTSYAPLNQIHTPPILVLIEKR 200
>gi|419766816|ref|ZP_14292992.1| MraW methylase-like family protein [Streptococcus mitis SK579]
gi|383353726|gb|EID31330.1| MraW methylase-like family protein [Streptococcus mitis SK579]
Length = 185
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 96/177 (54%), Gaps = 13/177 (7%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
VV + D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T LD+
Sbjct: 15 VVTQDDIVVDATMGNGHDTLFLAKL------AKKVYAFDIQEQALEKTQERLDQAGMTN- 67
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
+L H +++ V ++ A FNLGYLP DKSVIT +TT ALE +L+
Sbjct: 68 ---AQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITRPQTTIEALEKLCGLLV 121
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P + + ++
Sbjct: 122 KGGRIAIMIYYGHEGGDIEKDAVLDFVSQLNQQEYTATIYRTLNQVNNPPFLVMIEK 178
>gi|421289292|ref|ZP_15740044.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA54354]
gi|421304611|ref|ZP_15755268.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA62331]
gi|395890552|gb|EJH01558.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA54354]
gi|395906155|gb|EJH17058.1| SAM-dependent methyltransferase [Streptococcus pneumoniae GA62331]
Length = 179
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 2 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKKVYAFDIQKQALEKTQERLH 55
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ GL +L H +++ V K+ A FNLGYLP DKSVIT +TT A
Sbjct: 56 QA------GLTNAQLILQGHETLDQFVTKAKAG---IFNLGYLPSADKSVITRLQTTIEA 106
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 107 LEKLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPF 166
Query: 262 VFLFKR 267
+ + ++
Sbjct: 167 LVMIEK 172
>gi|419530089|ref|ZP_14069620.1| rRNA methylase family protein [Streptococcus pneumoniae GA40028]
gi|379574829|gb|EHZ39767.1| rRNA methylase family protein [Streptococcus pneumoniae GA40028]
Length = 174
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L +
Sbjct: 4 VVTKEDIVVDATMGNGHDTLFLAKL------AKKVYAFDIQKQALEKTQERLHQA----- 52
Query: 151 KGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
GL +L H +++ V K+ A FNLGYLP DKSVIT +TT ALE +
Sbjct: 53 -GLTNAQLILQGHETLDQFVTKAKAG---IFNLGYLPSADKSVITRPQTTIEALEKLCGL 108
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P + + ++
Sbjct: 109 LVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPFLVMIEK 167
>gi|418964429|ref|ZP_13516233.1| putative rRNA methylase [Streptococcus anginosus subsp. whileyi
CCUG 39159]
gi|383340524|gb|EID18818.1| putative rRNA methylase [Streptococcus anginosus subsp. whileyi
CCUG 39159]
Length = 182
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ K D VVDAT GNGYDTL + ++ A VY DIQ +A++ T+
Sbjct: 8 AHAFLSEVITKEDIVVDATMGNGYDTLFLAQL------AKKVYAFDIQEQAIEQTT---- 57
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K ++A+ V+L H + + V +++ FNLGYLP DK+VIT TT ALE
Sbjct: 58 KRLAEAKLDNVELLLTGHENVAQYVE---SIKAAIFNLGYLPSADKTVITQPHTTIQALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+ GG I++++Y GH GG E +AV F L ++ ++ +N+ P +
Sbjct: 115 KLCQRLVAGGRIAIMIYYGHAGGDVERDAVLDFVSQLPQQEFTVALYKTINQINQPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|188584795|ref|YP_001916340.1| putative rRNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179349482|gb|ACB83752.1| putative rRNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 190
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 92/167 (55%), Gaps = 14/167 (8%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+ +GD VVDATCGNG+DT + V D+ G VY DIQ +AL++T L +
Sbjct: 20 VISQGDRVVDATCGNGHDTEYLANRVGDQ---GLVYAFDIQKQALETTWKRL------QQ 70
Query: 151 KGL---VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAER 207
+GL V+L N H ++ E V V V FNLGYLPG DK V+T + T A+E A
Sbjct: 71 EGLHERVRLLNKGHEKLIEDV--EGPVSCVMFNLGYLPGSDKKVVTEPQNTIRAIEGALS 128
Query: 208 ILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN 254
+L GGL+++V+Y GH G E + V+ + L + K LN
Sbjct: 129 LLKAGGLLTIVLYPGHETGMIESQVVQDYLMRLDQTKFHTKKIISLN 175
>gi|422861955|ref|ZP_16908587.1| rRNA methylase [Streptococcus sanguinis SK408]
gi|327474550|gb|EGF19955.1| rRNA methylase [Streptococcus sanguinis SK408]
Length = 183
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 96/186 (51%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K DTVVDAT GNG+DTL + K+ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDTVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQAVEKTRQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
AE GL V+L H +++ A FNLGYLP DKSVIT +TT A
Sbjct: 61 -----AEAGLNNVQLILSGHETLDQYTDHFKAA---IFNLGYLPSADKSVITRPDTTLEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE R L GG ++++Y GH GG E +AV F L D+ ++ +N+ P
Sbjct: 113 LEKVCRGLEKGGRAAIMIYYGHEGGEVEKDAVLDFVSQLPQQDFTVALYKTINQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|218887204|ref|YP_002436525.1| rRNA methylase [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218758158|gb|ACL09057.1| putative rRNA methylase [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 243
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 93/178 (52%), Gaps = 18/178 (10%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157
VD T GNG+DTL + ++V + G V+ D+Q AL T+ L A +GL +
Sbjct: 71 AVDGTAGNGHDTLFLARLV---GARGLVHAFDVQPRALARTAERL------ASEGLEERV 121
Query: 158 NMCHSRMEEIVPKSTA--------VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
+ H R E + + A + FNLG+LPG D+SV T ETT ALEA ++
Sbjct: 122 AL-HGRGHEELAAALASHGVWPPRISAAMFNLGFLPGSDRSVTTRPETTLTALEALLPMM 180
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
PGGLIS+ VY GHPGG +E A++ +L D W + + N+P P + L R
Sbjct: 181 APGGLISLHVYAGHPGGEDEAAALDRRLAALDWDRWQVARHEFANKPRNPERLLLVLR 238
>gi|149010726|ref|ZP_01832097.1| rRNA methylase, putative [Streptococcus pneumoniae SP19-BS75]
gi|147765207|gb|EDK72136.1| rRNA methylase, putative [Streptococcus pneumoniae SP19-BS75]
Length = 185
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 8 AHDFLAEVVTKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQKQALEKTQERLH 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ GL +L H +++ V K+ A FNLGYLP DKSVIT +TT A
Sbjct: 62 QA------GLTNAQLILQGHETLDQFVTKAKAG---IFNLGYLPSADKSVITRPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L+ GG I++++Y GH GG E AV F L+ ++ ++ LN+ P
Sbjct: 113 LEKLCGLLVKGGRIAIMIYYGHEGGDLERYAVLDFVIQLNQQEYTAAIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|402300685|ref|ZP_10820157.1| hypothetical protein BalcAV_16123 [Bacillus alcalophilus ATCC
27647]
gi|401724173|gb|EJS97558.1| hypothetical protein BalcAV_16123 [Bacillus alcalophilus ATCC
27647]
Length = 190
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 8/186 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + +++GD +D T G G DT+ + K+V S G VY DIQ EA+K T+ +
Sbjct: 10 ARNLLAQALKEGDIAIDCTAGKGNDTITLAKLVG---STGHVYSFDIQEEAIKQTA---E 63
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVP--KSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
K ++ + V LF H EE+VP ++ FNLGYLPGG+K+++T E+T A
Sbjct: 64 KVKNERLEERVTLFQQGHEIFEEVVPTLHLPHIKAAIFNLGYLPGGNKTIVTKPESTLKA 123
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
++ + + GLI +V+Y GH G+ E +++ F +L ++ ++ +N+ P
Sbjct: 124 IQQLLKCMPKEGLIVLVIYHGHKEGKLERDSILNFVTNLDQNEAHVLNYRFINQKNDPPF 183
Query: 262 VFLFKR 267
+ ++
Sbjct: 184 IVAIEK 189
>gi|418964737|ref|ZP_13516526.1| putative rRNA methylase [Streptococcus constellatus subsp.
constellatus SK53]
gi|383344448|gb|EID22613.1| putative rRNA methylase [Streptococcus constellatus subsp.
constellatus SK53]
Length = 181
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ ++ K D VVDAT GNG+DTL + ++ A VY DIQ +A+K T+
Sbjct: 8 AHAFLSEIITKEDIVVDATMGNGHDTLFLAQL------AKKVYAFDIQEQAIKQTT---- 57
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K +A+ V+L H +++ + ++ FNLGYLP DKSVIT + TT ALE
Sbjct: 58 KRLVEAKVDNVELLLTGHENVDQYIE---TIKAAIFNLGYLPSADKSVITQTHTTIQALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L GG I++++Y GH GG E +AV FA L ++ ++ +N+ P +
Sbjct: 115 KLCQRLEAGGRIALMIYYGHIGGEIERDAVLDFASHLPQQEFTVTLYKTINQINQPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|417850429|ref|ZP_12496335.1| MraW methylase-like family protein [Streptococcus mitis SK1080]
gi|339452510|gb|EGP65137.1| MraW methylase-like family protein [Streptococcus mitis SK1080]
Length = 185
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 98/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV + D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L+
Sbjct: 8 AHDFLAEVVTQDDIVVDATMGNGHDTLFLAKL------AKKVYAFDIQEQALEKTQERLN 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ +L H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 62 QAGMTN----AQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 115 KLCGLLVKGGRIAIMIYYGHEGGDLEKDAVLDFVSQLNQQEYTVAIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|444414583|ref|ZP_21210836.1| putative rRNA methylase [Streptococcus pneumoniae PNI0199]
gi|444281445|gb|ELU86762.1| putative rRNA methylase [Streptococcus pneumoniae PNI0199]
Length = 185
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 8 AHDFLAEVVAKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQKQALEKTQERLH 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ GL +L H +++ V K+ A FNLGYLP DKSVIT +TT A
Sbjct: 62 QA------GLTNAQLILQGHETLDQFVTKAKAG---IFNLGYLPSADKSVITRPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE +L GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 113 LEKLCGLLAKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|366162357|ref|ZP_09462112.1| putative rRNA methylase [Acetivibrio cellulolyticus CD2]
Length = 189
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+H V +GDTV+DAT GNG DT+ + K+V + +G VY D+Q AL T+ LD +
Sbjct: 16 EHFVEEGDTVIDATAGNGSDTVFLAKLVGE---SGHVYSFDVQQIALDRTAEKLDSLDLR 72
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
V L N H ++ V + V+ V FNLGYLP GD ++ T ++TT A++ + +
Sbjct: 73 DR---VDLINDGHENLDNYV--KSKVKAVMFNLGYLPRGDHNIGTRAKTTITAIQKSMEL 127
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
L+ GG+IS+VVY G G +E V + L ++ K + +N+ P
Sbjct: 128 LVVGGIISIVVYHGGDSGFDEKIQVIEYLGKLEPKKYVVMKTEFINQENCP 178
>gi|304404973|ref|ZP_07386633.1| putative rRNA methylase [Paenibacillus curdlanolyticus YK9]
gi|304345852|gb|EFM11686.1| putative rRNA methylase [Paenibacillus curdlanolyticus YK9]
Length = 196
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 102/193 (52%), Gaps = 6/193 (3%)
Query: 77 GTLITIAANGVW-KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAL 135
G L ++ W + V GD V+DAT GNG DT + ++V G VY DIQ AL
Sbjct: 2 GFLSVLSTAHQWIRERVSPGDAVIDATAGNGVDTRFLAELVGPR---GAVYAFDIQEAAL 58
Query: 136 KSTSSLLDKTTSKAEKGLVKLFNMCHSRME-EIVPK-STAVRLVAFNLGYLPGGDKSVIT 193
+T L + ++L H RM + PK + A+ V FNLGYLPG D ++IT
Sbjct: 59 LATRERLAPLEDEGRLPALQLVLDSHERMAAHVQPKHAGAIAAVMFNLGYLPGADPTIIT 118
Query: 194 TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQML 253
+++ AL A +L PGG+++ V+Y GHPGG +E +AV + +L ++M
Sbjct: 119 KPDSSIAALSEALALLKPGGILTCVLYPGHPGGDDEADAVAQWCAALPSTAGQAVVYRMA 178
Query: 254 NRPLAPVLVFLFK 266
+P AP LV + +
Sbjct: 179 QKPTAPYLVAIER 191
>gi|313668775|ref|YP_004049059.1| hypothetical protein NLA_14850 [Neisseria lactamica 020-06]
gi|313006237|emb|CBN87699.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 188
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ +G +D T GNG+DTL + + G V+ LDIQ +AL +T L +
Sbjct: 15 RQVLPEGGNALDGTAGNGHDTLFLAQTAGIR---GKVWALDIQPQALNNTRCRL----QE 67
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A V+L H +++ V S + FN G+LPGGDKS+ T +ET+ AL AA +
Sbjct: 68 AGYSNVRLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTRTETSITALSAALSL 125
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG++ V+Y GH G++E EA+E +A++L + + ++ NR P + F++
Sbjct: 126 LKEGGMLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLRYGFTNRKNNPPYLLAFEK 184
>gi|402816219|ref|ZP_10865810.1| putative rRNA methylase YtqB [Paenibacillus alvei DSM 29]
gi|402506123|gb|EJW16647.1| putative rRNA methylase YtqB [Paenibacillus alvei DSM 29]
Length = 205
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 100/190 (52%), Gaps = 11/190 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A V K V+ G+ V+DAT G G DTL + ++ G V D+Q AL+ T L
Sbjct: 10 AQQVVKERVQPGERVIDATMGTGVDTLFLARLTGPR---GAVAAFDVQEGALELTRKRLH 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPK----STAVRLVAFNLGYLP--GGDKSVITTSET 197
+ V L++ H M + + + STA + FNLGYLP DK ++T E+
Sbjct: 67 RELGVEGSTHVSLYHTSHDAMHQALNEEWHGSTAA--IMFNLGYLPTDEADKQIMTVPES 124
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
T ALE +L PGG++S+V+Y GH GG +E V+ +A+SL ++ML RP
Sbjct: 125 TLAALETGLTLLRPGGVLSIVLYPGHAGGDDEANKVQLWAQSLPARLGQAVIYRMLQRPD 184
Query: 258 APVLVFLFKR 267
AP ++ + KR
Sbjct: 185 APYVIAVEKR 194
>gi|303228827|ref|ZP_07315641.1| methyltransferase domain protein [Veillonella atypica
ACS-134-V-Col7a]
gi|302516539|gb|EFL58467.1| methyltransferase domain protein [Veillonella atypica
ACS-134-V-Col7a]
Length = 191
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 98/182 (53%), Gaps = 6/182 (3%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKT 145
+W +++ VVDATCGNG+D L + A+ + + C +YG+DIQ +A+ ++ LL
Sbjct: 14 IWDRIMKSASVVVDATCGNGHDLLYL----AERAQSECHLYGIDIQEQAVSASRELLASK 69
Query: 146 TSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA 205
++ + L N + + + ++T + L+ FNLGYLPGGD S+IT T AL A
Sbjct: 70 KLQSNVTITFLHNSHDIALHQEIKENT-IDLIIFNLGYLPGGDHSIITRPHNTIEALNNA 128
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
L G+I++V Y G G EE EA+ + L + C + +N+ P ++L
Sbjct: 129 FPKLAKDGIITIVAYPGTTEGMEEKEALHEYIAQLDQAKYNVCHWHPINQANNPPELYLI 188
Query: 266 KR 267
++
Sbjct: 189 QK 190
>gi|345875656|ref|ZP_08827447.1| rRNA methylase [Neisseria weaveri LMG 5135]
gi|343968731|gb|EGV36955.1| rRNA methylase [Neisseria weaveri LMG 5135]
Length = 188
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 98/176 (55%), Gaps = 8/176 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V GD V+D T GNG+DTL++ K+V E G V+ D+Q +AL++T L + ++ +
Sbjct: 18 VSVGDAVMDGTAGNGHDTLLLAKLVGIE---GKVWAFDVQEQALQAT---LGRLKNEGME 71
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V L H E V + A + FN G+LPG DKS T ++T+ AL++A +L
Sbjct: 72 RQVALILDGHQHAAEYVDQPLAAAV--FNFGWLPGSDKSCTTQAQTSIAALDSAVAMLKS 129
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GGL+ V+Y GH GREE AVE +A +L ++ K+ +N+ P + ++
Sbjct: 130 GGLLVAVLYPGHEAGREEAAAVETWAVALPQREYAVLKYGFINQKNRPPYILAVEK 185
>gi|228993501|ref|ZP_04153410.1| hypothetical protein bpmyx0001_42280 [Bacillus pseudomycoides DSM
12442]
gi|228766216|gb|EEM14861.1| hypothetical protein bpmyx0001_42280 [Bacillus pseudomycoides DSM
12442]
Length = 177
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 100/181 (55%), Gaps = 14/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V++GD VDAT GNG+DT + ++V + G V+G DIQ +A++S+++ L E+
Sbjct: 5 VKEGDYAVDATLGNGHDTCFLAEIVGEH---GKVFGFDIQRKAIESSATHL------KER 55
Query: 152 GLVK---LFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAE 206
GL + L + H + ++P+ ++ FNLGYLPGGDK ++T +T A+E
Sbjct: 56 GLEERTVLVHDSHDTLLSVLPEEAKGKVTGAIFNLGYLPGGDKHIVTKPNSTIAAIEQLL 115
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
++ P G+I +V+Y GH G+ E +AV FA L ++ +N+ P + +
Sbjct: 116 EVMAPEGIIVLVIYHGHSEGQVERDAVLQFAEELDQKQAHVLRYGFINQQNNPPFIVAIE 175
Query: 267 R 267
+
Sbjct: 176 K 176
>gi|238021263|ref|ZP_04601689.1| hypothetical protein GCWU000324_01161 [Kingella oralis ATCC 51147]
gi|237868243|gb|EEP69249.1| hypothetical protein GCWU000324_01161 [Kingella oralis ATCC 51147]
Length = 191
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 104/184 (56%), Gaps = 8/184 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + + + GDTV+D T GNG+DTL++ ++V SAG VY DIQ AL +T+ D
Sbjct: 10 AHDLLRQHIHAGDTVLDGTAGNGHDTLLLAQLV---GSAGKVYAFDIQDSALAATA---D 63
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ V+L + H + V + A + FN+GYLP GD ++ T +ET+ AL+
Sbjct: 64 RLQQHQLIERVQLIHAGHQHLARHVKQPIAAAI--FNMGYLPRGDHNITTQAETSIAALQ 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
AA +L P G++ V+Y GH G+ E A+ +FA++L + +++ +N+ P +V
Sbjct: 122 AALALLQPRGILIAVLYHGHEQGKPETAAILSFAQALPQTQYRALRYEFINQQNCPPIVL 181
Query: 264 LFKR 267
++
Sbjct: 182 AIEK 185
>gi|289167555|ref|YP_003445824.1| hypothetical protein smi_0709 [Streptococcus mitis B6]
gi|288907122|emb|CBJ21956.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 167
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 13/172 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV + D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 8 AHDFLAEVVTQDDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTQERL- 60
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++A +L H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 61 ---NQAGMTNAQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR 255
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+
Sbjct: 115 KLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVSQLNQQEYTAAIYRTLNQ 166
>gi|225574953|ref|ZP_03783563.1| hypothetical protein RUMHYD_03032 [Blautia hydrogenotrophica DSM
10507]
gi|225037800|gb|EEG48046.1| putative rRNA methylase [Blautia hydrogenotrophica DSM 10507]
Length = 187
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 96/188 (51%), Gaps = 7/188 (3%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
IT + W+ +R GD +DAT GNG DT ++ ++ G V DIQ AL++T
Sbjct: 6 ITEWCHHFWREQIRPGDLCIDATMGNGKDTQVLCELTG---KGGKVLAFDIQECALQATR 62
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTK 199
L + +L+ H M+E K +V + FNLGYLPGGD S T +E++
Sbjct: 63 ERLRRAGVPEN---YELYCRSHVHMDEYA-KEGSVSCIVFNLGYLPGGDHSKATRAESSI 118
Query: 200 MALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
A+E R+L GGL+S+ +Y G G EE + V A+ R+L ++ + NRP P
Sbjct: 119 EAIEQGLRLLKKGGLMSLCIYSGGDSGYEEKDGVLAYLRTLDSQRYLVICSEYYNRPNHP 178
Query: 260 VLVFLFKR 267
+ L R
Sbjct: 179 PIPVLIVR 186
>gi|397905111|ref|ZP_10505982.1| SAM-dependent methyltransferase, MraW methylase family [Caloramator
australicus RC3]
gi|397161760|emb|CCJ33316.1| SAM-dependent methyltransferase, MraW methylase family [Caloramator
australicus RC3]
Length = 198
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 98/184 (53%), Gaps = 11/184 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + K V+ + D VDAT GNG DTL + ++ G VY DIQ+ A++
Sbjct: 12 AQDIVKKVIDETDIAVDATLGNGNDTLFLSNLL----HRGKVYAFDIQTIAIEK----FK 63
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
KT + V L N H + V + A + + FNLGYLPGGD+ +IT +TT AL
Sbjct: 64 KTIHERNIKNVILINDGHENILNYVME--APKAIMFNLGYLPGGDEKIITRPDTTLKALS 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLV 262
+ +IL PGG+I++VVY GH GG EE ++ F + L + + + NR AP L+
Sbjct: 122 DSLKILKPGGVITLVVYTGHLGGAEEGLLIDEFIKKLDPKIYSVMQIKFANRDERAPYLI 181
Query: 263 FLFK 266
+ K
Sbjct: 182 VIEK 185
>gi|238019301|ref|ZP_04599727.1| hypothetical protein VEIDISOL_01165 [Veillonella dispar ATCC 17748]
gi|237864000|gb|EEP65290.1| hypothetical protein VEIDISOL_01165 [Veillonella dispar ATCC 17748]
Length = 191
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 98/182 (53%), Gaps = 6/182 (3%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKT 145
+W V++ + VVDATCGNG+D L + A+ + GC +YG+DIQ +A+ S+ LL ++
Sbjct: 14 IWDRVMKHANVVVDATCGNGHDLLYL----AERARKGCHLYGIDIQMKAINSSQELL-QS 68
Query: 146 TSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA 205
AE + + H R K + L+ FNLGYLPGGD VIT T A++
Sbjct: 69 NDIAEDVSLTFIHDSHDRALVNQLKDEVIDLMIFNLGYLPGGDHQVITKPHQTIDAIKEG 128
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
L G+I++V Y G G EE++ ++++ L + C + +N+ P +F+
Sbjct: 129 LEKLSKSGVITIVAYPGTTEGLEEMQILKSYLSDLEQKLYNVCHWHPMNQINNPPELFIL 188
Query: 266 KR 267
++
Sbjct: 189 QK 190
>gi|423068048|ref|ZP_17056836.1| hypothetical protein HMPREF9682_00057 [Streptococcus intermedius
F0395]
gi|355366939|gb|EHG14652.1| hypothetical protein HMPREF9682_00057 [Streptococcus intermedius
F0395]
Length = 181
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 98/184 (53%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ ++ K D VVDAT GNGYDTL + ++ A VY DIQ +A+K T+
Sbjct: 8 AHAFLSEIITKEDIVVDATMGNGYDTLFLAQL------AKKVYAFDIQEQAIKQTA---- 57
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K ++A+ V+LF H + + + + A FNLGYLP DK VIT TT ALE
Sbjct: 58 KRLAEAKVDNVELFLTGHENVGQYIKSAKAA---IFNLGYLPSADKLVITQPYTTIQALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L GG I++++Y GH GG E +AV FA L ++ ++ +N+ P +
Sbjct: 115 KLCQRLEAGGRIAVMIYYGHTGGEIERDAVLDFASHLPQQEFTVTLYKTINQINQPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|421490544|ref|ZP_15937916.1| putative rRNA methylase [Streptococcus anginosus SK1138]
gi|400373034|gb|EJP25969.1| putative rRNA methylase [Streptococcus anginosus SK1138]
Length = 182
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VV D VVDAT GNG+DTL + ++ A VY DIQ +A++ T+
Sbjct: 8 AHAFLEEVVTDEDIVVDATMGNGHDTLFLARL------AKKVYAFDIQEQAIEQTT---- 57
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K ++A+ V+L H +++ V +++ FNLGYLP DKSVIT TT ALE
Sbjct: 58 KRLAEAKLDNVELLLTGHENVDQYVE---SIKAAIFNLGYLPSADKSVITQPHTTIQALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+ GG I++++Y GH GG E +AV F L ++ ++ +N+ P +
Sbjct: 115 KLCQRLVIGGRIAIMIYYGHEGGDVERDAVLDFVSQLPQQEFTVALYKTINQINQPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|225023758|ref|ZP_03712950.1| hypothetical protein EIKCOROL_00622 [Eikenella corrodens ATCC
23834]
gi|224943640|gb|EEG24849.1| hypothetical protein EIKCOROL_00622 [Eikenella corrodens ATCC
23834]
Length = 220
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 8/162 (4%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
+G VDAT GNG+DTL + + V S G VY DIQ +AL +T + L + E+
Sbjct: 45 EGGIAVDATAGNGHDTLFLAQCV---GSGGRVYAFDIQPQALAATQARLQ---AAREERQ 98
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
V+L + H+ + V + V + FN GYLPGG+K++ T + +T AL A IL PGG
Sbjct: 99 VRLISASHADLTHYV--NEPVHSIVFNCGYLPGGNKALTTETGSTLSALAQAVHILRPGG 156
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR 255
L+++V+Y GH G E +AV +A +L + + NR
Sbjct: 157 LLAVVLYPGHEAGALEAQAVSEWAAALPQQQFAVLHYGFTNR 198
>gi|148989023|ref|ZP_01820423.1| rRNA methylase, putative [Streptococcus pneumoniae SP6-BS73]
gi|410476114|ref|YP_006742873.1| rRNA methylase [Streptococcus pneumoniae gamPNI0373]
gi|444386892|ref|ZP_21184919.1| putative rRNA methylase [Streptococcus pneumoniae PCS125219]
gi|444390212|ref|ZP_21188127.1| putative rRNA methylase [Streptococcus pneumoniae PCS70012]
gi|444391487|ref|ZP_21189313.1| putative rRNA methylase [Streptococcus pneumoniae PCS81218]
gi|444394155|ref|ZP_21191708.1| putative rRNA methylase [Streptococcus pneumoniae PNI0002]
gi|444397106|ref|ZP_21194593.1| putative rRNA methylase [Streptococcus pneumoniae PNI0006]
gi|444399670|ref|ZP_21197109.1| putative rRNA methylase [Streptococcus pneumoniae PNI0007]
gi|444402542|ref|ZP_21199704.1| putative rRNA methylase [Streptococcus pneumoniae PNI0008]
gi|444405937|ref|ZP_21202773.1| putative rRNA methylase [Streptococcus pneumoniae PNI0009]
gi|444408779|ref|ZP_21205409.1| putative rRNA methylase [Streptococcus pneumoniae PNI0010]
gi|444418002|ref|ZP_21213996.1| putative rRNA methylase [Streptococcus pneumoniae PNI0360]
gi|444420156|ref|ZP_21215969.1| putative rRNA methylase [Streptococcus pneumoniae PNI0427]
gi|147925520|gb|EDK76597.1| rRNA methylase, putative [Streptococcus pneumoniae SP6-BS73]
gi|406369059|gb|AFS42749.1| putative rRNA methylase [Streptococcus pneumoniae gamPNI0373]
gi|444254643|gb|ELU61076.1| putative rRNA methylase [Streptococcus pneumoniae PCS125219]
gi|444256675|gb|ELU63013.1| putative rRNA methylase [Streptococcus pneumoniae PCS70012]
gi|444261222|gb|ELU67526.1| putative rRNA methylase [Streptococcus pneumoniae PNI0002]
gi|444262337|gb|ELU68635.1| putative rRNA methylase [Streptococcus pneumoniae PNI0006]
gi|444265570|gb|ELU71571.1| putative rRNA methylase [Streptococcus pneumoniae PCS81218]
gi|444266307|gb|ELU72268.1| putative rRNA methylase [Streptococcus pneumoniae PNI0008]
gi|444268434|gb|ELU74293.1| putative rRNA methylase [Streptococcus pneumoniae PNI0007]
gi|444269073|gb|ELU74888.1| putative rRNA methylase [Streptococcus pneumoniae PNI0010]
gi|444270532|gb|ELU76287.1| putative rRNA methylase [Streptococcus pneumoniae PNI0009]
gi|444282128|gb|ELU87408.1| putative rRNA methylase [Streptococcus pneumoniae PNI0360]
gi|444285512|gb|ELU90569.1| putative rRNA methylase [Streptococcus pneumoniae PNI0427]
Length = 185
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +ALK T L
Sbjct: 8 AHDFLAEVVTKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQKQALKKTQERLH 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ GL +L H +++ V K+ A FNLGYLP DKS+IT +TT A
Sbjct: 62 QA------GLTNAQLILQGHETLDQFVTKAKAG---IFNLGYLPSADKSIITRPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
L +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 113 LGKLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|315223317|ref|ZP_07865178.1| rRNA methylase family protein [Streptococcus anginosus F0211]
gi|315187749|gb|EFU21503.1| rRNA methylase family protein [Streptococcus anginosus F0211]
Length = 182
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 100/184 (54%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ K D VVDAT GNG+DTL + ++ A VY DIQ +A++ T+
Sbjct: 8 AHAFLLEVITKEDIVVDATMGNGHDTLFLARL------AKKVYAFDIQEQAIEQTT---- 57
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K ++A+ V+LF H +++ V +++ FNLGYLP DK+VIT TT ALE
Sbjct: 58 KRLAEAKLDNVELFLTGHENVDQYVE---SIKAAIFNLGYLPSADKTVITQPHTTIQALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+ G I++++Y GH GG E +AV F L ++ ++ +N+ P +
Sbjct: 115 KLCQRLVTSGRIAIMIYYGHEGGDVERDAVLDFVSQLPQQEFTVALYKTINQINQPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|168335198|ref|ZP_02693303.1| possible rRNA methyltransferase [Epulopiscium sp. 'N.t. morphotype
B']
Length = 185
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 94/176 (53%), Gaps = 10/176 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ GD+VVDATCGNG DTL + +V E G VY DIQ A+ T+ LL + +
Sbjct: 18 IAAGDSVVDATCGNGNDTLFLANLVGAE---GKVYAFDIQDVAIAETTRLLAEHNIDCVQ 74
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+ + H ME +++ FNLGYLP GD S+ T S TT A++ L P
Sbjct: 75 VIKDGHEVAHKYME------SSIAAAIFNLGYLPKGDHSITTQSHTTITAVDHLLDYLKP 128
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFK 266
G+I +VVY GH G+ E A+ +F ++L + +++ LN + AP ++ + K
Sbjct: 129 NGIIVLVVYHGHSNGKLEKRALRSFCQTLDQKSFSVLEYKFLNQKNNAPFIIAIEK 184
>gi|418966944|ref|ZP_13518647.1| putative rRNA methylase [Streptococcus mitis SK616]
gi|383346048|gb|EID24122.1| putative rRNA methylase [Streptococcus mitis SK616]
Length = 185
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 97/184 (52%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A V DIQ +AL+ T LD
Sbjct: 8 AHDFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKKVCAFDIQEQALEKTQERLD 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ +L H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 62 QAGYTN----AQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITRPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P +
Sbjct: 115 KLCHLLVKGGRIAIMIYYGHEGGDIERDAVLDFVSQLNQQEYTAAIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|417958283|ref|ZP_12601198.1| rRNA methylase [Neisseria weaveri ATCC 51223]
gi|343966941|gb|EGV35192.1| rRNA methylase [Neisseria weaveri ATCC 51223]
Length = 188
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V GD V+D T GNG+DTL++ K+V E G V+ D+Q +AL++T L + ++ +
Sbjct: 18 VSVGDAVMDGTAGNGHDTLLLAKLVGIE---GKVWAFDVQEQALQAT---LGRLKNEGME 71
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V L H E V + A + FN G+LPG DKS T ++T+ AL++A +L
Sbjct: 72 RQVALILDGHQHAAEYVDQPLAAAV--FNFGWLPGSDKSCTTQAQTSIAALDSAVAMLKS 129
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GGL+ V+Y GH GREE AVE +A L ++ K+ +N+ P + ++
Sbjct: 130 GGLLVAVLYPGHEAGREEAAAVETWAAVLPQREYAVLKYGFINQKNRPPYILAVEK 185
>gi|125625315|ref|YP_001033798.1| hypothetical protein llmg_2562 [Lactococcus lactis subsp. cremoris
MG1363]
gi|389855707|ref|YP_006357951.1| hypothetical protein LLNZ_13245 [Lactococcus lactis subsp. cremoris
NZ9000]
gi|124494123|emb|CAL99124.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|300072129|gb|ADJ61529.1| hypothetical protein LLNZ_13245 [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 211
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 107/211 (50%), Gaps = 35/211 (16%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + K ++ D VVDAT GNGYDTL + ++ A VY D+Q AL++T L+
Sbjct: 8 AHWMLKDIINVDDVVVDATMGNGYDTLFLAELGAK------VYAFDVQEAALEATEKRLE 61
Query: 144 KTTSKAEKGLVK---------------LFN----------MCHSRMEEIVPK-STAVRLV 177
K + +VK FN + + EE++ + V+
Sbjct: 62 NKAIKTQ--IVKKASPVDQSSLPPKEQAFNGVSMTEPSVDLILAGHEELINYVQSPVKAA 119
Query: 178 AFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237
FNLGYLP DK+++T +ETT AL + +L+ GG I++V+Y GH GG EE +AV +
Sbjct: 120 IFNLGYLPKTDKNIVTRAETTLSALSSLTDLLVVGGRIALVIYYGHEGGEEEKDAVIKWT 179
Query: 238 RSLSVDDWICCKFQMLNR-PLAPVLVFLFKR 267
+L DW + LN+ P+LV + KR
Sbjct: 180 STLPQKDWEVTSYAPLNQIHTPPILVLIEKR 210
>gi|424788238|ref|ZP_18214997.1| hypothetical protein D593_1410 [Streptococcus intermedius BA1]
gi|422113002|gb|EKU16759.1| hypothetical protein D593_1410 [Streptococcus intermedius BA1]
Length = 182
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 100/184 (54%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ K D VVDAT GNGYDTL + ++ A VY DIQ +AL+ T+
Sbjct: 8 AHAFLSEVITKEDIVVDATMGNGYDTLFLAQL------AKKVYAFDIQKQALEQTT---- 57
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K ++A+ V+L H + + + KST + FNLGYLP DKSVIT TT ALE
Sbjct: 58 KRLTEAKVDNVELLLTGHENVGQYI-KSTKAAI--FNLGYLPSADKSVITQPHTTIQALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+ GG I++++Y GH GG E +AV F L ++ ++ +N+ P +
Sbjct: 115 KLCQCLVVGGRIAVMIYYGHIGGDVERDAVLDFVGQLPQQEFTVALYKTINQINYPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|323702788|ref|ZP_08114448.1| putative rRNA methylase [Desulfotomaculum nigrificans DSM 574]
gi|333924266|ref|YP_004497846.1| rRNA methylase [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323532305|gb|EGB22184.1| putative rRNA methylase [Desulfotomaculum nigrificans DSM 574]
gi|333749827|gb|AEF94934.1| rRNA methylase [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 192
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ GDT VD T GNG+DTL++ ++V G V+ DIQ++AL +T L E+
Sbjct: 19 LQAGDTAVDGTMGNGHDTLILAQLV---GPTGKVWAFDIQAQALANTRERLATAGVLDER 75
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
++L H +++ V S ++ +NLGYLPGGD ++IT +ETT A+ +L
Sbjct: 76 --IELIQDGHEYIKKYV--SHPIQAAIYNLGYLPGGDHAIITLTETTLTAIRDTLDLLAA 131
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFLFK 266
GG + +VVY GHPGG E EAVEA+ L ++ K LNRP AP ++ + K
Sbjct: 132 GGRMVVVVYPGHPGGDREKEAVEAYLARLDAREYKVLKCNFLNRPATAPGVILIEK 187
>gi|374579199|ref|ZP_09652293.1| putative S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Desulfosporosinus youngiae
DSM 17734]
gi|374415281|gb|EHQ87716.1| putative S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Desulfosporosinus youngiae
DSM 17734]
Length = 200
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 8/176 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
+ G+ K + GDT VD T GNG DT + +V D G VY DIQ +A+++T L
Sbjct: 21 SKGICKSKLNHGDTAVDCTMGNGNDTAFLCDLVGDN---GRVYAFDIQDDAIRNTRKRLQ 77
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ L+ H +++ + ++ VRL+ FNLGYLP GD ++ T ETT A+E
Sbjct: 78 ELKFHERAQLIL---DGHENIDKYIKEN--VRLIIFNLGYLPKGDHNITTKKETTIKAVE 132
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
IL G+I +++Y GH GR E E +E F +LS ++ + N+ P
Sbjct: 133 KCLGILEHNGIILLIIYPGHENGRLEKEVLETFTSTLSQKEYNVVRISFANQVNNP 188
>gi|224476851|ref|YP_002634457.1| hypothetical protein Sca_1368 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421458|emb|CAL28272.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 185
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 11/169 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ + TV+DATCGNG+DTL + + V + G VYG DIQ EA+K+ + +
Sbjct: 18 INESSTVIDATCGNGHDTLFLAEHVPN----GKVYGFDIQEEAIKAAQLKVRDLNNTI-- 71
Query: 152 GLVKLFNMCHSRMEEIVPKST-AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
L + H +E+ + + V FNLGYLP GDK ++T ++TT A+E ++L
Sbjct: 72 ----LIHDGHENIEQYIESNDYPVDAAIFNLGYLPKGDKHIVTEADTTITAIENIFKMLS 127
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
P G+I +V+Y GHP G+ E E V + ++ ++ +N+ P
Sbjct: 128 PEGIIVLVIYPGHPEGKIESETVYQYLKNFDQQKAHILQYGFINQRNNP 176
>gi|15615847|ref|NP_244151.1| hypothetical protein BH3285 [Bacillus halodurans C-125]
gi|10175908|dbj|BAB07004.1| BH3285 [Bacillus halodurans C-125]
Length = 190
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 101/186 (54%), Gaps = 8/186 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + ++V+ G VD T GNG+DT+ + K+V + G VYG D+Q +A+ T+ +
Sbjct: 10 ARFLLQNVLTPGSIAVDGTTGNGHDTVFLAKLVGE---TGHVYGFDVQEQAIHQTNKRV- 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVP--KSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
K E+ V LF+ H ++ ++P + ++ FNLGYLPG DK+++T E+T A
Sbjct: 66 KELGFPER--VTLFHASHEQVATLIPPDQHPNIKAAIFNLGYLPGSDKTIVTKPESTITA 123
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
++ I+ G LI +V+Y GH G+ E A+E+F L +++ +N+ P
Sbjct: 124 IKKLLSIMPSGALIVLVIYHGHEEGKIEKTALESFVTDLEQTTAHVLRYEFINQVNDPPF 183
Query: 262 VFLFKR 267
+ ++
Sbjct: 184 IIAIEK 189
>gi|350572008|ref|ZP_08940320.1| rRNA methyltransferase [Neisseria wadsworthii 9715]
gi|349790886|gb|EGZ44784.1| rRNA methyltransferase [Neisseria wadsworthii 9715]
Length = 189
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ GD +D T GNG+DTL + + V G V+ D+Q +AL +T++ L++ E+
Sbjct: 18 LKSGDCALDGTAGNGHDTLCLARCV---GKTGKVWAFDVQPQALANTAARLEEA---GER 71
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V+L H + + V + A + FN G+LPGGDKS+ T + T+ AL AA +L P
Sbjct: 72 SQVELVQTGHETLADYVNRPLAAAV--FNFGWLPGGDKSLTTQAHTSIQALSAALALLKP 129
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKF---QMLNRPLAPVLVFLFKR 267
GGL+ V+Y GH G EE +AVE +A +L +++ K+ +NRP P L+ L KR
Sbjct: 130 GGLLLAVLYPGHEAGSEEADAVEQWAAALPQNEYSVLKYGFINQINRP--PYLLALEKR 186
>gi|319938710|ref|ZP_08013074.1| methyltransferase [Streptococcus anginosus 1_2_62CV]
gi|335031290|ref|ZP_08524735.1| putative rRNA methylase [Streptococcus anginosus SK52 = DSM 20563]
gi|319811760|gb|EFW08026.1| methyltransferase [Streptococcus anginosus 1_2_62CV]
gi|333770046|gb|EGL47120.1| putative rRNA methylase [Streptococcus anginosus SK52 = DSM 20563]
Length = 182
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 100/184 (54%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VV D VVDAT GNG+DTL + ++ A VY DIQ +A++ T+
Sbjct: 8 AHAFLEEVVTDEDIVVDATMGNGHDTLFLARL------AKKVYAFDIQEQAVEQTT---- 57
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K ++A+ V+L H +++ V +++ FNLGYLP DK+VIT TT ALE
Sbjct: 58 KRLAEAKLDNVELLLTGHENVDQYV---ASIKAAIFNLGYLPSADKTVITQPHTTIQALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+ GG I++++Y GH GG E +AV F L ++ ++ +N+ P +
Sbjct: 115 KLCQRLVTGGRIAIMIYYGHTGGDVERDAVLDFVSQLPQQEFTVALYKTINQINQPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|347752817|ref|YP_004860382.1| rRNA methylase [Bacillus coagulans 36D1]
gi|347585335|gb|AEP01602.1| rRNA methylase [Bacillus coagulans 36D1]
Length = 190
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 98/182 (53%), Gaps = 15/182 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V+ G +DAT GNG+DT+ + K V + G V+ DIQ EA++ T L+K +
Sbjct: 18 VKSGGFAIDATAGNGHDTVFLAKRVGE---GGKVFAFDIQPEAVRRTKERLEK------E 68
Query: 152 GLV---KLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETTKMALEAAE 206
GLV +LF H E +P + ++ FNLGYLP DK+VIT E+T ALE
Sbjct: 69 GLVTRAELFCTGHEHASECIPAALHGKISGAVFNLGYLPDSDKTVITRPESTIAALEQIF 128
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFLF 265
+L GG+I++VVY GH GG E + + + + L +++ LN+ P L+ +
Sbjct: 129 SMLETGGIIAVVVYHGHEGGAYERDRLLDYVKQLDQKKAHVLRYEFLNQANHPPFLIAIE 188
Query: 266 KR 267
KR
Sbjct: 189 KR 190
>gi|414161108|ref|ZP_11417371.1| hypothetical protein HMPREF9310_01745 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876787|gb|EKS24685.1| hypothetical protein HMPREF9310_01745 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 185
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 13/170 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ + TVVDATCGNG+DTL + + V G VYG DIQ A+K+ +K
Sbjct: 18 INEASTVVDATCGNGHDTLFLAQHV----PKGHVYGFDIQEAAIKAAR---EKVKDYNNT 70
Query: 152 GLVKLFNMCHSRM--EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
L+ + SR +E +P A+ FNLGYLP GDK ++TTSETT A+E+ +L
Sbjct: 71 TLILDGHEHVSRYIKQEDLPIDAAI----FNLGYLPKGDKHIVTTSETTIQAIESLFEML 126
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
P G+I +V+Y GHP GR E V + + ++ +N+ P
Sbjct: 127 APEGIIVIVIYPGHPEGRIESNVVFEYLQQFDQQKAHVLQYGFINQQNNP 176
>gi|261400430|ref|ZP_05986555.1| putative rRNA methylase [Neisseria lactamica ATCC 23970]
gi|269209877|gb|EEZ76332.1| putative rRNA methylase [Neisseria lactamica ATCC 23970]
Length = 188
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 97/179 (54%), Gaps = 9/179 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ +G +D T GNG+DTL + + G V+ DIQ +AL +T L +
Sbjct: 15 RQVLPEGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALNNTRCRL----QE 67
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A V+L H +++ V S + FN G+LPGGDKS+ T +ET+ AL AA +
Sbjct: 68 AGYSNVRLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTRTETSITALSAALSL 125
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG++ V+Y GH G++E EA+E +A++L + + ++ NR P + F++
Sbjct: 126 LKEGGMLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLRYGFTNRKNNPPYLLAFEK 184
>gi|169334036|ref|ZP_02861229.1| hypothetical protein ANASTE_00429 [Anaerofustis stercorihominis DSM
17244]
gi|169258753|gb|EDS72719.1| putative rRNA methylase [Anaerofustis stercorihominis DSM 17244]
Length = 185
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 104/186 (55%), Gaps = 10/186 (5%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
+T N + + V G+ V+D T GNG DTL + K V ++ G VY DIQS+A+K+T
Sbjct: 5 VTEITNVIIDNKVVSGNIVLDMTMGNGNDTLYLSKKVGEK---GKVYAFDIQSQAVKNTK 61
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTK 199
LLD+ ++ + L N H + V + V +NLGYLPGGDK ++T S ++
Sbjct: 62 KLLDE--NRINNAV--LINDSHENVLNYV--TDKVDFAVYNLGYLPGGDKKIVTKSSSSV 115
Query: 200 MALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLA 258
++E +L G+I + YVGH GG EE + + +F SLS ++ K + NR P++
Sbjct: 116 KSIEYVLTVLNNDGIIVICAYVGHEGGMEEYKDILSFVSSLSKSNFNVTKLEHTNRKPVS 175
Query: 259 PVLVFL 264
P ++ +
Sbjct: 176 PKMIII 181
>gi|430749274|ref|YP_007212182.1| S-adenosylmethionine-dependent methyltransferase [Thermobacillus
composti KWC4]
gi|430733239|gb|AGA57184.1| putative S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Thermobacillus composti
KWC4]
Length = 191
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 103/175 (58%), Gaps = 10/175 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+R GD V+DAT GNG DT + K V + G VYG DIQ AL + + + +
Sbjct: 18 IRPGDAVIDATVGNGVDTAFLAKAVGPK---GVVYGFDIQQAALDAARARVAAEAPETR- 73
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGD--KSVITTSETTKMALEAAER 207
++LF H RM E++P R+ V FNLGYLPG D ++V+T ETT AL+A+
Sbjct: 74 --LELFLASHHRMAELLPARLMGRVSAVMFNLGYLPGADDVRTVVTRPETTLAALDASLA 131
Query: 208 ILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
L PGG++++VVY GH GGREE EAV+A+AR+L ++M P AP L+
Sbjct: 132 FLRPGGVLTVVVYTGHEGGREEGEAVDAWARALPASAGQAVLYRMPQLPQAPYLI 186
>gi|251795313|ref|YP_003010044.1| rRNA methylase [Paenibacillus sp. JDR-2]
gi|247542939|gb|ACS99957.1| putative rRNA methylase [Paenibacillus sp. JDR-2]
Length = 192
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 97/178 (54%), Gaps = 5/178 (2%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V+ GD V+DAT G G DTL + ++V + G V+ DIQ +AL T L + +
Sbjct: 18 VQPGDIVIDATAGGGVDTLKLAELV---GARGTVHAFDIQQDALDRTLERLRPLEERGKL 74
Query: 152 GLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L H+ M E V S V V FNLGYLPGGD+SVIT TT AL+AA +L
Sbjct: 75 PQVRLHLRNHALMAEAVGPSAEGNVAAVMFNLGYLPGGDESVITVPTTTIAALDAALALL 134
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG++++ +Y GHPGG EE V +A L + ++ R AP L+ + KR
Sbjct: 135 RRGGIVTVALYPGHPGGAEEAAIVADWAAKLPGALYAAVLYRQPQRDTAPYLIAVEKR 192
>gi|319651929|ref|ZP_08006052.1| hypothetical protein HMPREF1013_02664 [Bacillus sp. 2_A_57_CT2]
gi|317396421|gb|EFV77136.1| hypothetical protein HMPREF1013_02664 [Bacillus sp. 2_A_57_CT2]
Length = 190
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 100/188 (53%), Gaps = 11/188 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS-LL 142
A + + V GD V+DAT GNG+DT+ + +V G VYG DIQ EA+++T + L
Sbjct: 10 ARQLLEKAVSPGDIVIDATLGNGHDTVFLADLVG---HNGRVYGFDIQEEAVQNTKTRLA 66
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKM 200
D S LF+ H + E VP ++ A FNLGYLPGGDK ++T +TT
Sbjct: 67 DHDLSDR----ATLFHTGHEFILENVPPVHHGKITAAIFNLGYLPGGDKDIVTRPQTTIS 122
Query: 201 ALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAP 259
A++ ++ P G+I +V+Y GH G E + + + R L ++Q +N + P
Sbjct: 123 AIDQLLELMAPEGIILLVIYHGHIEGAVERDYLLRYVRQLDQSLVHVLQYQFINLKNNPP 182
Query: 260 VLVFLFKR 267
+V + KR
Sbjct: 183 FIVAIEKR 190
>gi|349574411|ref|ZP_08886363.1| rRNA methyltransferase [Neisseria shayeganii 871]
gi|348014030|gb|EGY52922.1| rRNA methyltransferase [Neisseria shayeganii 871]
Length = 230
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 92/172 (53%), Gaps = 7/172 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ +W + +G VDAT GNG+DTL + ++ + G VY D+Q+ AL++T + L
Sbjct: 40 AHRLWAAWLPEGGCAVDATAGNGHDTLRLAQLA---GTNGLVYAFDVQAAALEATRARLQ 96
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + G V L H + + V + V FN GYLPGGDKS T ++TT A+
Sbjct: 97 --AAGLDDGRVCLVEAGHQTLADYVARPADV--AVFNCGYLPGGDKSRTTQTDTTLQAVA 152
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR 255
A +L PGGL+++ +Y GH G E EAV + +L + + LNR
Sbjct: 153 QALAVLKPGGLLTVALYPGHEEGAREAEAVRQWLSALPQQAYAVLHYGFLNR 204
>gi|422878215|ref|ZP_16924681.1| rRNA methylase [Streptococcus sanguinis SK1059]
gi|422928069|ref|ZP_16961011.1| rRNA methylase [Streptococcus sanguinis ATCC 29667]
gi|422931065|ref|ZP_16963996.1| rRNA methylase [Streptococcus sanguinis SK340]
gi|332367422|gb|EGJ45155.1| rRNA methylase [Streptococcus sanguinis SK1059]
gi|339617633|gb|EGQ22255.1| rRNA methylase [Streptococcus sanguinis ATCC 29667]
gi|339620247|gb|EGQ24817.1| rRNA methylase [Streptococcus sanguinis SK340]
Length = 183
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 96/186 (51%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K DTVVDAT GNG+DTL + ++ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDTVVDATMGNGHDTLFLAQL------AKQVYAFDIQEQAVEKTCQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
AE GL V+L H +++ A FNLGYLP DKSVIT +TT A
Sbjct: 61 -----AEAGLDNVQLILAGHETLDQYTDHFKAA---IFNLGYLPSADKSVITRPDTTLEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE R L GG ++++Y GH GG E +AV F L D+ ++ +N+ P
Sbjct: 113 LEKVCRGLEKGGRAAIMIYYGHEGGEVEKDAVLDFVSQLPQQDFTVALYKTINQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|422882829|ref|ZP_16929285.1| rRNA methylase [Streptococcus sanguinis SK355]
gi|332358319|gb|EGJ36145.1| rRNA methylase [Streptococcus sanguinis SK355]
Length = 183
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 99/189 (52%), Gaps = 23/189 (12%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K DTVVDAT GNG+DTL + K+ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDTVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQAVEKTRQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
AE GL +L H +++ + A FNLGYLP DKSVIT +TT
Sbjct: 61 -----AEAGLDNAQLILAGHETLDQYLDHFKAA---IFNLGYLPSADKSVITRPDTT--- 109
Query: 202 LEAAERI---LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
LEA E++ L GG ++++Y GH GG E +AV F LS D+ ++ +N+
Sbjct: 110 LEALEKVCLGLEKGGRAAIMIYYGHEGGEVEKDAVLDFVSQLSQQDFTVALYKTINQINN 169
Query: 259 PVLVFLFKR 267
P + + ++
Sbjct: 170 PPFLVMIEK 178
>gi|118444903|ref|YP_878837.1| rRNA methylase [Clostridium novyi NT]
gi|118135359|gb|ABK62403.1| putative rRNA methylase [Clostridium novyi NT]
Length = 188
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 103/179 (57%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++GD VDAT GNG DT+ + ++V ++ G +Y D+QS A+++T + E
Sbjct: 20 LQEGDIAVDATMGNGNDTVFLARLVGEK---GKIYSFDVQSTAIENTKKRISDNKINTE- 75
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
++L + H +++ + + V+LV FNLGYLP + ++ T +ETT +A++ + +L
Sbjct: 76 --IELIHDGHENIDKYIKEK--VKLVMFNLGYLPSAEHNITTKAETTIVAIKKSLDMLEK 131
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKF---QMLNRPLAPVLVFLFKR 267
G+I +V+Y GH G+ E A+E F +L+ ++ K +N P P+L+ + KR
Sbjct: 132 NGVILLVIYHGHENGKLEKVAIEEFTSNLNQKEYNVMKLGFINQINNP--PILIAIEKR 188
>gi|322390058|ref|ZP_08063593.1| rRNA methylase [Streptococcus parasanguinis ATCC 903]
gi|321143185|gb|EFX38628.1| rRNA methylase [Streptococcus parasanguinis ATCC 903]
Length = 185
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 99/187 (52%), Gaps = 19/187 (10%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ K D VVDAT GNG+DT+ + K+ AG VY DIQ +AL +T LD
Sbjct: 8 AHQFLAEVITKEDVVVDATMGNGHDTVFLAKL------AGQVYAFDIQEQALANTQEKLD 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K + V+L H +++ V ++ FNLGYLP DKSVIT TT +E
Sbjct: 62 KLGLQH----VQLILDGHQHVDQYVE---TLKAAIFNLGYLPSADKSVITLPATT---IE 111
Query: 204 AAERI---LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
A E+I L GG +++++Y GH GG E +AV F L ++ ++ LN+ P
Sbjct: 112 AMEKICARLQKGGRMAIMIYYGHEGGDIERDAVLDFVSQLPQKEYTATIYRTLNQVNQPP 171
Query: 261 LVFLFKR 267
+ + ++
Sbjct: 172 FLVMIEK 178
>gi|401681236|ref|ZP_10813141.1| MraW methylase-like family protein [Streptococcus sp. AS14]
gi|400187371|gb|EJO21566.1| MraW methylase-like family protein [Streptococcus sp. AS14]
Length = 183
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 95/186 (51%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQAVEKTRQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
AE GL V+L H +++ A FNLGYLP DKSVIT +TT A
Sbjct: 61 -----AEAGLNNVQLILSGHETLDQYTDHFKAA---IFNLGYLPSADKSVITRPDTTLEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE R L GG ++++Y GH GG E +AV F L D+ ++ +N+ P
Sbjct: 113 LEKVCRGLEKGGRAAIMIYYGHEGGEVEKDAVLDFVSQLPQQDFTVALYKTINQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|374322923|ref|YP_005076052.1| SAM-dependent methyltransferase [Paenibacillus terrae HPL-003]
gi|357201932|gb|AET59829.1| SAM-dependent methyltransferase [Paenibacillus terrae HPL-003]
Length = 193
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 101/182 (55%), Gaps = 12/182 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK--A 149
V+ GDT +DAT G G DTL + K G VYG DIQ EAL+ LD+ S A
Sbjct: 18 VQPGDTAIDATVGTGADTLFLAKAAGRR---GRVYGFDIQQEALQLARRRLDEDESPSLA 74
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLP--GGDKSVITTSETTKMALEAA 205
E V L H +M E VP ++ A FNLGYLP G D SVIT +++T AL+AA
Sbjct: 75 E---VSLLLQGHEQMREAVPDKLHGKVAAVMFNLGYLPSEGADPSVITHTDSTLAALDAA 131
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
+L P G+++ V+Y GH GG EE +AV +A ++ + ++ L R +P +V +
Sbjct: 132 LYLLRPRGILTAVLYPGHAGGGEEAKAVLQWASTVPISSGQSIIYRQLQRAASPYVVAVE 191
Query: 266 KR 267
K+
Sbjct: 192 KK 193
>gi|77408629|ref|ZP_00785363.1| conserved hypothetical protein [Streptococcus agalactiae COH1]
gi|421146451|ref|ZP_15606165.1| hypothetical protein GB112_01144 [Streptococcus agalactiae GB00112]
gi|77172747|gb|EAO75882.1| conserved hypothetical protein [Streptococcus agalactiae COH1]
gi|401686911|gb|EJS82877.1| hypothetical protein GB112_01144 [Streptococcus agalactiae GB00112]
Length = 188
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAL-KSTSSLLDKTTSKA 149
V+ K +DAT GNG DT+ + K S+ VY DIQ EA+ K+ + L ++ S A
Sbjct: 16 VIDKEAITLDATMGNGNDTVFLAK------SSKKVYAFDIQEEAIAKTKAKLTEQGISNA 69
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
E L H +E+ V T +R FNLGYLP DK+VIT TT A++ IL
Sbjct: 70 E-----LILDGHENLEQYV--HTPLRAAIFNLGYLPSADKTVITKPHTTIKAIKNVLDIL 122
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG +S++VY GH GG+ E +AV AF L +++ +Q LN+ P + + ++
Sbjct: 123 EVGGRLSLMVYYGHDGGKSERDAVIAFVEQLPQNNFATMLYQPLNQVNTPPFLIMVEK 180
>gi|343525322|ref|ZP_08762277.1| putative rRNA methylase [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|343395592|gb|EGV08130.1| putative rRNA methylase [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
Length = 181
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 97/184 (52%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ K D VVDAT GNGYDTL + ++ A VY DIQ +A++ T+
Sbjct: 8 AHAFLSEVITKEDIVVDATMGNGYDTLFLAQL------AKKVYAFDIQEQAIEQTT---- 57
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K ++A+ V+L H + + + + A FNLGYLP DKSVIT TT ALE
Sbjct: 58 KRLAEAKLDNVELLLTGHENVGQYIKSAKAA---IFNLGYLPSADKSVITQPHTTIQALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+ GG I++++Y GH GG E + V F L ++ ++ +N+ P +
Sbjct: 115 KLCQRLVIGGRIAVMIYYGHAGGDVERDTVLDFVSQLPQQEFTVALYKTINQINQPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|270292446|ref|ZP_06198657.1| SAM-dependent methyltransferase, MraW methylase family
[Streptococcus sp. M143]
gi|270278425|gb|EFA24271.1| SAM-dependent methyltransferase, MraW methylase family
[Streptococcus sp. M143]
Length = 185
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 97/184 (52%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV + D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 8 AHDFLAEVVTQDDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTQERL- 60
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+A +L H +++ V ++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 61 ---YQAGMTNAQLILQGHETLDQFVTEAKAG---IFNLGYLPSADKSVITQPQTTIEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L+ GG I++++Y GH GG E +AV F L+ + ++ LN+ P +
Sbjct: 115 KLCHLLVKGGRIAIMIYYGHEGGDIERDAVLDFVSQLNQQECTVAIYRTLNQVNNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|323488395|ref|ZP_08093642.1| SAM-dependent methyltransferase [Planococcus donghaensis MPA1U2]
gi|323397902|gb|EGA90701.1| SAM-dependent methyltransferase [Planococcus donghaensis MPA1U2]
Length = 187
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 96/173 (55%), Gaps = 11/173 (6%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ + V GD V+D T GNG+DT + + + G V+ DIQ+EA+ +T +
Sbjct: 13 LLEQAVTSGDVVIDGTAGNGHDTHFLASLTG---ANGKVFAFDIQAEAIHATRERVQ--- 66
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
E ++L + H+++++ V + A + FNLGYLP GD S+IT +++T ALE
Sbjct: 67 ---EFDHIELIHDSHAKIKDYVTEPIAAAV--FNLGYLPKGDHSIITKAKSTLSALEQCL 121
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
+L G++ +VVY GH GG EE +AV F SL + K++ +N+ +P
Sbjct: 122 DLLKIKGVLLVVVYSGHEGGSEERDAVMEFVSSLPQKTFDVLKYEFINQQHSP 174
>gi|22537547|ref|NP_688398.1| hypothetical protein SAG1400 [Streptococcus agalactiae 2603V/R]
gi|25011512|ref|NP_735907.1| hypothetical protein gbs1470 [Streptococcus agalactiae NEM316]
gi|76787418|ref|YP_330041.1| hypothetical protein SAK_1433 [Streptococcus agalactiae A909]
gi|76797669|ref|ZP_00779938.1| methyltransferase [Streptococcus agalactiae 18RS21]
gi|77411510|ref|ZP_00787854.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
gi|339301201|ref|ZP_08650313.1| rRNA methylase [Streptococcus agalactiae ATCC 13813]
gi|406709793|ref|YP_006764519.1| hypothetical protein A964_1314 [Streptococcus agalactiae
GD201008-001]
gi|417005728|ref|ZP_11944321.1| hypothetical protein FSLSAGS3026_08105 [Streptococcus agalactiae
FSL S3-026]
gi|424049145|ref|ZP_17786696.1| hypothetical protein WY5_03615 [Streptococcus agalactiae ZQ0910]
gi|22534429|gb|AAN00271.1|AE014256_3 conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
gi|24413051|emb|CAD47129.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562475|gb|ABA45059.1| conserved hypothetical protein [Streptococcus agalactiae A909]
gi|76586963|gb|EAO63452.1| methyltransferase [Streptococcus agalactiae 18RS21]
gi|77162436|gb|EAO73403.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
gi|319745348|gb|EFV97662.1| rRNA methylase [Streptococcus agalactiae ATCC 13813]
gi|341577541|gb|EGS27949.1| hypothetical protein FSLSAGS3026_08105 [Streptococcus agalactiae
FSL S3-026]
gi|389649345|gb|EIM70827.1| hypothetical protein WY5_03615 [Streptococcus agalactiae ZQ0910]
gi|406650678|gb|AFS46079.1| hypothetical protein A964_1314 [Streptococcus agalactiae
GD201008-001]
Length = 188
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAL-KSTSSLLDKTTSKA 149
V+ K +DAT GNG DT+ + K S+ VY DIQ EA+ K+ + L ++ S A
Sbjct: 16 VIDKEAITLDATMGNGNDTVFLAK------SSKKVYAFDIQEEAIAKTKAKLTEQGISNA 69
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
E L H +E+ V T +R FNLGYLP DK+VIT TT A++ IL
Sbjct: 70 E-----LILDGHENLEQYV--HTPLRAAIFNLGYLPSADKTVITKPHTTIKAIKNVLDIL 122
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG +S++VY GH GG+ E +AV AF L +++ +Q LN+ P + + ++
Sbjct: 123 EVGGRLSLMVYYGHDGGKSEKDAVIAFVEQLPQNNFATMLYQPLNQVNTPPFLIMVEK 180
>gi|225858482|ref|YP_002739992.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 70585]
gi|225721149|gb|ACO17003.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 70585]
Length = 185
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 98/186 (52%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +AL+ T L
Sbjct: 8 AHDFLAEVVTKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQKQALEKTQERLH 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ GL +L H +++ V K+ A FNLGYLP DKS+IT +TT A
Sbjct: 62 QA------GLTNAQLILQGHETLDQFVTKAKAG---IFNLGYLPSADKSIITRPQTTIEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
L +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+ P
Sbjct: 113 LGKLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|319946473|ref|ZP_08020710.1| rRNA methylase [Streptococcus australis ATCC 700641]
gi|417920462|ref|ZP_12563969.1| putative rRNA methylase [Streptococcus australis ATCC 700641]
gi|319747441|gb|EFV99697.1| rRNA methylase [Streptococcus australis ATCC 700641]
gi|342829412|gb|EGU63768.1| putative rRNA methylase [Streptococcus australis ATCC 700641]
Length = 185
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 96/186 (51%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + V+ DTVVDAT GNG+DTL + K+ A VY DIQ +AL T L+
Sbjct: 8 AHDFLREVITDQDTVVDATMGNGHDTLFLAKL------AKEVYAFDIQEQALVHTQKRLE 61
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
E GL +L H + V + V+ FNLGYLP DKS+IT +TT A
Sbjct: 62 ------EAGLSNARLLLKGHEEADHYVNQ---VKAAIFNLGYLPSADKSIITQPKTTIQA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
++ LI GG +++++Y GH GG E +AV F L ++ ++ LN+ P
Sbjct: 113 IDKLCHRLIKGGRMAIMIYYGHEGGELEKDAVLEFVSQLPQQEFTVTSYRTLNQINHPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|326791105|ref|YP_004308926.1| rRNA methylase [Clostridium lentocellum DSM 5427]
gi|326541869|gb|ADZ83728.1| rRNA methylase [Clostridium lentocellum DSM 5427]
Length = 184
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 9/184 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+G ++ GD +DAT G G+DT+ + ++V D G V DIQ EA+ ST LL
Sbjct: 9 AHGWMCQYLKAGDLCIDATAGRGHDTVFLCELVGD---TGRVLAFDIQEEAVNSTKFLLK 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ KAE ++ H+ M+ V T V + FN GYLPGGD S+ T ++T+K+A+E
Sbjct: 66 EKGLKAE-----VYLESHTHMDHYVKPET-VDGIVFNFGYLPGGDHSMSTKADTSKLAIE 119
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L G++S+ +Y G G EE E + + +SL + ++ N+P P L
Sbjct: 120 KGLVLLKRHGVMSLCIYHGGDTGFEEKEVLMTYLKSLDAKAYTVAVCELYNKPNHPPLAV 179
Query: 264 LFKR 267
L ++
Sbjct: 180 LIQK 183
>gi|421532570|ref|ZP_15978926.1| hypothetical protein M3M_06249 [Streptococcus agalactiae
STIR-CD-17]
gi|403642142|gb|EJZ03009.1| hypothetical protein M3M_06249 [Streptococcus agalactiae
STIR-CD-17]
Length = 188
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAL-KSTSSLLDKTTSKA 149
V+ K +DAT GNG DT+ + K S+ VY DIQ EA+ K+ + L ++ S A
Sbjct: 16 VIDKEAITLDATMGNGNDTVFLAK------SSKKVYAFDIQEEAIAKTKAKLTEQGISNA 69
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
E L H +E+ V T +R FNLGYLP DK+VIT TT A++ IL
Sbjct: 70 E-----LILDGHENLEQYV--HTPLRAAIFNLGYLPSADKTVITKPHTTIKAIKNVLDIL 122
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG +S++VY GH GG+ E +AV AF L +++ +Q LN+ P + + ++
Sbjct: 123 EVGGRLSLMVYYGHDGGKSEKDAVIAFVEQLPQNNFATMLYQPLNQVNTPPFLIMVEK 180
>gi|403067967|ref|ZP_10909299.1| hypothetical protein ONdio_00020 [Oceanobacillus sp. Ndiop]
Length = 185
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 8/176 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V G+ VVDATCGNG DTL + ++V + G VY DIQ +A+ +T K EK
Sbjct: 17 VENGEKVVDATCGNGNDTLFLSRVVGEN---GHVYAFDIQEQAIANTR----KKLISNEK 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V L + H + + + K+ + FNLGYLP DK+VIT +T A++ +L
Sbjct: 70 TNVSLIHDSHENISDYI-KNQEIGGAIFNLGYLPNSDKTVITKGGSTVTAVDKILSLLKK 128
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GLI +VVY GH GG++E E++ + L + ++ +N+ P + ++
Sbjct: 129 DGLIVLVVYHGHAGGKDEKESLLRYLLQLDQKKYTVLRYGFINQKNDPPFILAIQK 184
>gi|308174723|ref|YP_003921428.1| RNA methylase [Bacillus amyloliquefaciens DSM 7]
gi|384160565|ref|YP_005542638.1| RNA methylase [Bacillus amyloliquefaciens TA208]
gi|384165507|ref|YP_005546886.1| RNA methylase [Bacillus amyloliquefaciens LL3]
gi|384169652|ref|YP_005551030.1| RNA methylase [Bacillus amyloliquefaciens XH7]
gi|307607587|emb|CBI43958.1| putative RNA methylase [Bacillus amyloliquefaciens DSM 7]
gi|328554653|gb|AEB25145.1| RNA methylase [Bacillus amyloliquefaciens TA208]
gi|328913062|gb|AEB64658.1| putative RNA methylase [Bacillus amyloliquefaciens LL3]
gi|341828931|gb|AEK90182.1| putative RNA methylase [Bacillus amyloliquefaciens XH7]
Length = 193
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K ++GD VDAT GNG+DT + +V + G V+ DIQ++AL T L
Sbjct: 13 LLKSAAQEGDITVDATMGNGHDTYFLAGLVGE---TGHVHAFDIQADALAKTKERLGDAL 69
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLV--AFNLGYLPGGDKSVITTSETTKMALEA 204
S V L + H +++ +P+ R+ FNLGYLPGGDKS+ T +T A+E
Sbjct: 70 SPR----VTLHHKSHDQIKASLPEDAHGRVACAVFNLGYLPGGDKSITTNGHSTISAIEQ 125
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
+L GLI +VVY GHP G+ E A+ + +L + + LN+ P +
Sbjct: 126 LLELLKENGLIVLVVYHGHPEGKTEKNALLEYCENLDQEKARVLSYGFLNQRNDPPFIIA 185
Query: 265 FKR 267
++
Sbjct: 186 IEK 188
>gi|392394410|ref|YP_006431012.1| O-methyltransferase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390525488|gb|AFM01219.1| putative O-methyltransferase [Desulfitobacterium dehalogenans ATCC
51507]
Length = 193
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 96/176 (54%), Gaps = 9/176 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ GD V+D T G G DTL + + V +G VY D+Q AL+ T LL++ +
Sbjct: 20 IQPGDIVLDLTAGRGRDTLFLAQQVG---GSGRVYAFDVQEVALQQTKILLEEHQVEDR- 75
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V L++ H R+ E V V+ FNLGYLPG + + T + +T ALEA ++L
Sbjct: 76 --VCLYHWDHGRLLEKV--QCPVQAAMFNLGYLPGHSQEITTQAASTLAALEAVLQLLRQ 131
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLFK 266
GG+I++ VY GHPGG EE AVE F L + + + +N+ L AP + + K
Sbjct: 132 GGVIALTVYRGHPGGVEEAAAVEEFLSCLPRRKYSVLRGEYINQALNAPYWILVQK 187
>gi|222151685|ref|YP_002560841.1| hypothetical protein MCCL_1438 [Macrococcus caseolyticus JCSC5402]
gi|222120810|dbj|BAH18145.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 183
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 92/175 (52%), Gaps = 19/175 (10%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ G TV+DATCGNG DTL + + + G ++ DIQ A+ +T DKT +
Sbjct: 18 IEHGATVIDATCGNGNDTLYLAQQL---QGTGVIHAFDIQQSAINNTK---DKTAA---- 67
Query: 152 GLVKLFNMCHSRM---EEIVPK-STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAER 207
FN H + E ++ + VRL FNLGYLP GDKS++T +TT A+E
Sbjct: 68 -----FNNIHYHLDGHENVLDYVDSPVRLSIFNLGYLPKGDKSIVTLPQTTVQAIERIFS 122
Query: 208 ILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
IL G+I +V+Y GH G+ E E V + + + +D K++ +N+ P +
Sbjct: 123 ILEKEGIIILVIYPGHAEGQIEKEVVLNYLQHFNQEDAHIFKYEFINQKNNPPFI 177
>gi|319892816|ref|YP_004149691.1| MraW methylase family SAM-dependent methyltransferase
[Staphylococcus pseudintermedius HKU10-03]
gi|386318981|ref|YP_006015144.1| rRNA methylase [Staphylococcus pseudintermedius ED99]
gi|317162512|gb|ADV06055.1| SAM-dependent methyltransferase, MraW methylase family
[Staphylococcus pseudintermedius HKU10-03]
gi|323464152|gb|ADX76305.1| rRNA methylase, putative [Staphylococcus pseudintermedius ED99]
Length = 187
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 12/172 (6%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157
V+DATCGNG+DT K +AD G VYG DIQ EA+++T + + V LF
Sbjct: 24 VIDATCGNGHDT----KFLADLVPHGHVYGCDIQQEAIENTKQRVHDYNN------VSLF 73
Query: 158 NMCHSRMEEIVPKS--TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215
+ H + + + T V FNLGYLP GDKS++T S TT A++ IL P G+I
Sbjct: 74 HTGHEWITQYIRDEHLTQVHAAIFNLGYLPKGDKSIVTQSTTTLAAVQTIFDILQPEGII 133
Query: 216 SMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+VVY GH G+EE + + K++ +N+ P V ++
Sbjct: 134 VLVVYPGHEEGKEESMTLMKHLAAFDQQRAHVLKYEFINQQNRPPYVIAIEK 185
>gi|77405777|ref|ZP_00782862.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
gi|77175634|gb|EAO78418.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
Length = 188
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAL-KSTSSLLDKTTSKA 149
V+ K +DAT GNG DT+ + K S+ VY DIQ EA+ K+ + L ++ S A
Sbjct: 16 VIDKEAITLDATMGNGNDTVFLAK------SSKKVYAFDIQEEAIAKTKAKLTEQGISNA 69
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
E L H +E+ V T +R FNLGYLP DK+VIT TT A++ IL
Sbjct: 70 E-----LILDGHENLEQYV--HTPLREAIFNLGYLPSADKTVITKPHTTIKAIKNVLDIL 122
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG +S++VY GH GG+ E +AV AF L +++ +Q LN+ P + + ++
Sbjct: 123 EVGGRLSLMVYYGHDGGKSEKDAVIAFVEQLPQNNFATMLYQPLNQVNTPPFLIMVEK 180
>gi|406667754|ref|ZP_11075507.1| Putative rRNA methylase [Bacillus isronensis B3W22]
gi|405384389|gb|EKB43835.1| Putative rRNA methylase [Bacillus isronensis B3W22]
Length = 193
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 95/189 (50%), Gaps = 18/189 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST-SSLL 142
A + K V +GD VDAT GNG+DTL + +V D+ G VY D+Q EA+ +T LL
Sbjct: 10 AQTLLKMSVSEGDIAVDATAGNGHDTLFLANLVGDD---GYVYAFDVQKEAVDATLHRLL 66
Query: 143 DKTTSKA----EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETT 198
D + G + N H P S A+ FNLGYLPG + ++T TT
Sbjct: 67 DNALEHRAIVLKDGHENVANYIHK------PVSAAI----FNLGYLPGSNHEIVTKPNTT 116
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E+ ++L GG+I +VVY GH GG+ E + V + L +++ +N+
Sbjct: 117 IQAIESLLKLLKVGGMIVLVVYHGHEGGKNERDEVIRYVSDLPQKHVHVLRYEFMNQKND 176
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 177 PPFIIALEK 185
>gi|422854970|ref|ZP_16901628.1| rRNA methylase [Streptococcus sanguinis SK1]
gi|327462947|gb|EGF09268.1| rRNA methylase [Streptococcus sanguinis SK1]
Length = 183
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 95/184 (51%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + ++ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDIVVDATMGNGHDTLFLAQL------AKQVYAFDIQEQAVEKTRQRL- 60
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++A+ V+L H M++ A FNLGYLP DKSVIT +TT ALE
Sbjct: 61 ---AEADLDNVQLILSGHETMDQYTDHFKAA---IFNLGYLPSADKSVITRPDTTLEALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
R L GG ++++Y GH GG E +AV F L D+ ++ +N+ P +
Sbjct: 115 KVCRGLEKGGRAAIMIYYGHEGGEVEKDAVLDFVSQLPQQDFTVALYKTINQINNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|393199840|ref|YP_006461682.1| SAM-dependent methyltransferase [Solibacillus silvestris StLB046]
gi|327439171|dbj|BAK15536.1| SAM-dependent methyltransferase [Solibacillus silvestris StLB046]
Length = 193
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 18/181 (9%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST-SSLLDKTTSKA- 149
V +GD VDAT GNG+DTL + +V D+ G VY D+Q EA+ +T LLD
Sbjct: 18 VSEGDIAVDATAGNGHDTLFLANLVGDD---GYVYAFDVQKEAVDATLHRLLDNALEHRA 74
Query: 150 ---EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
+ G + N H P S A+ FNLGYLPG + ++T TT A+E+
Sbjct: 75 IVLKDGHENVANYIHK------PVSAAI----FNLGYLPGSNHEIVTKPNTTIQAIESLL 124
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
++L GG+I +VVY GH GG+ E + V + L +++ +N+ P + +
Sbjct: 125 KLLKVGGMIVLVVYHGHEGGKNERDEVIRYVSDLPQKHVHVLRYEFMNQKNDPPFIIALE 184
Query: 267 R 267
+
Sbjct: 185 K 185
>gi|157151080|ref|YP_001450937.1| methyltransferase [Streptococcus gordonii str. Challis substr. CH1]
gi|157075874|gb|ABV10557.1| methyltransferase [Streptococcus gordonii str. Challis substr. CH1]
Length = 184
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 94/186 (50%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQAVEKTRQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
AE GL +L H +++ A FNLGYLP DKSVIT TT A
Sbjct: 61 -----AEAGLDNAQLILAGHETLDQYTDHFKAA---IFNLGYLPSADKSVITRPATTLEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE R L GG ++++Y GH GG +E +AV F L D+ ++ +N+ P
Sbjct: 113 LEKVCRGLEKGGRAAIMIYYGHEGGEDEKDAVLDFVSQLPQQDFTVALYKTINQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|422110368|ref|ZP_16380391.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378751|emb|CBX22577.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 188
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 96/179 (53%), Gaps = 9/179 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ + +G +D T GNG+DTL + + G V+ DIQ +AL +T L +
Sbjct: 15 RQALPEGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALNNTRCRL----QE 67
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A V+L H +++ V S + FN G+LPGGDKS+ T +ET+ AL AA +
Sbjct: 68 AGYSNVRLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTRTETSITALSAALSL 125
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG++ V+Y GH G++E EA+E +A++L + + ++ NR P + F++
Sbjct: 126 LKEGGMLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLRYGFTNRKNNPPYLLAFEK 184
>gi|452995651|emb|CCQ92665.1| putative rRNA methylase [Clostridium ultunense Esp]
Length = 201
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 92/180 (51%), Gaps = 8/180 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V+ G +D T GNG DT+++ K+V G VYG DIQ ALK T L
Sbjct: 25 AKKIMYYYVKSGSIAIDCTVGNGNDTILLSKLVG---KKGKVYGFDIQPVALKITKEKLF 81
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K V L N H ++ + V + +NLGYLPGG+KS+ T +T +++
Sbjct: 82 KENLDKR---VILINDGHENIDRYI--FNEVDFIIYNLGYLPGGNKSIKTEIYSTLESIK 136
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ +L GL+ + Y GH GG EE E V+ F + L ++ KF LN+ P ++F
Sbjct: 137 KSLYLLRKNGLLLITCYTGHEGGLEEKEGVKDFLKELDQKEYSVLKFNFLNQKNNPPVLF 196
>gi|317130009|ref|YP_004096291.1| rRNA methylase [Bacillus cellulosilyticus DSM 2522]
gi|315474957|gb|ADU31560.1| rRNA methylase [Bacillus cellulosilyticus DSM 2522]
Length = 192
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 99/181 (54%), Gaps = 13/181 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V +GD V+DAT G G DTL + K+V S+ G VY DIQ A+ +T L + +
Sbjct: 19 VTEGDVVIDATAGKGNDTLFLSKLV---SNTGKVYSFDIQEAAITATRKKLAENNQDSN- 74
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L + H ++ + + + FNLGYLPG DK+V+TT ETT A+E + L
Sbjct: 75 --VQLIHDGHEKLLNYLDQDDYENIAGAIFNLGYLPGSDKTVVTTPETTIKAIEHIIKHL 132
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQM---LNRPLAPVLVFLFK 266
G++ +VVY GH G+ E +A+ F R+L + + ++Q +N P P ++ + K
Sbjct: 133 KVEGILVLVVYHGHAEGKVEKDALIPFIRALPQEHFHVLEYQFTNQINNP--PFIIAIEK 190
Query: 267 R 267
R
Sbjct: 191 R 191
>gi|423069967|ref|ZP_17058743.1| hypothetical protein HMPREF9177_00060 [Streptococcus intermedius
F0413]
gi|355366288|gb|EHG14006.1| hypothetical protein HMPREF9177_00060 [Streptococcus intermedius
F0413]
Length = 182
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 100/184 (54%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ K D VVDAT GNG+DTL + ++ A VY DIQ +AL+ T+
Sbjct: 8 AHAFLSEVITKEDIVVDATMGNGHDTLFLAQL------AKKVYAFDIQKQALEQTT---- 57
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K ++A+ V+L H + + + KST + FNLGYLP DKSVIT TT ALE
Sbjct: 58 KRLTEAKVDNVELLLTGHENVGQYI-KSTKAAI--FNLGYLPSADKSVITQPHTTIQALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+ GG I++++Y GH GG E +AV F L ++ ++ +N+ P +
Sbjct: 115 KLCQCLVVGGRIAVMIYYGHIGGDVERDAVLDFVGQLPQQEFTVALYKTINQINYPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|226323861|ref|ZP_03799379.1| hypothetical protein COPCOM_01636 [Coprococcus comes ATCC 27758]
gi|225207410|gb|EEG89764.1| putative rRNA methylase [Coprococcus comes ATCC 27758]
Length = 186
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 11/190 (5%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
IT + + + + +GD +DAT GNG DT + + V + G VY D+Q A+ T
Sbjct: 5 ITEYCHHILEEYIEEGDICIDATAGNGGDTEFLCQKVGE---TGNVYAFDVQEMAIAHTR 61
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTK 199
L+K KL H +M+ V + V + FN GYLPGGD + T + T+
Sbjct: 62 ERLEKANLSTR---AKLIQDGHEKMQTYVKEEAKV--IIFNFGYLPGGDHKIATRAATSL 116
Query: 200 MALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC---KFQMLNRP 256
A+E+A +L GG+I++ +Y G G EE EA+ + ++L W+ F N P
Sbjct: 117 TAIESALNLLKKGGIINLCIYSGGDTGYEEKEAILNYLKTLDSKKWLVIVNSYFNRKNDP 176
Query: 257 LAPVLVFLFK 266
PV ++ K
Sbjct: 177 PLPVFIYRLK 186
>gi|387880059|ref|YP_006310362.1| putative rRNA methylase [Streptococcus parasanguinis FW213]
gi|386793509|gb|AFJ26544.1| putative rRNA methylase [Streptococcus parasanguinis FW213]
Length = 185
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 96/180 (53%), Gaps = 19/180 (10%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+ K D VVDAT GNG+DT + ++ AG VY DIQ +AL +T LDK +
Sbjct: 15 VITKEDVVVDATMGNGHDTAFLAQL------AGQVYAFDIQEQALVNTQERLDKLGLQD- 67
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI-- 208
V+L H +++ V ++ FNLGYLP DKSVIT TT +EA E+I
Sbjct: 68 ---VRLILDGHQHVDQYVE---TLKAAIFNLGYLPSADKSVITLPSTT---IEAMEKICA 118
Query: 209 -LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG +++++Y GH GG E +AV F L D+ ++ LN+ P + + ++
Sbjct: 119 RLEKGGRMALMIYYGHEGGDIERDAVLDFVSQLPQKDYTATIYRTLNQVNQPPFLVMIEK 178
>gi|15676645|ref|NP_273789.1| hypothetical protein NMB0747 [Neisseria meningitidis MC58]
gi|416197424|ref|ZP_11618634.1| putative rRNA methylase [Neisseria meningitidis CU385]
gi|433487982|ref|ZP_20445150.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
M13255]
gi|433504563|ref|ZP_20461503.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
9506]
gi|433506770|ref|ZP_20463682.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
9757]
gi|433508897|ref|ZP_20465770.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
12888]
gi|433511015|ref|ZP_20467847.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
4119]
gi|7225976|gb|AAF41160.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|325140096|gb|EGC62625.1| putative rRNA methylase [Neisseria meningitidis CU385]
gi|432224448|gb|ELK80213.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
M13255]
gi|432242078|gb|ELK97602.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
9506]
gi|432242559|gb|ELK98077.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
9757]
gi|432247711|gb|ELL03146.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
12888]
gi|432248506|gb|ELL03931.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
4119]
Length = 188
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 9/179 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ + +G +D T GNG+DTL + + G V+ DIQ +AL +T L +
Sbjct: 15 RKALPEGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALNNTRCRL----QE 67
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A V+L H +++ +PK + FN G+LPGGDKS+ T +ET+ AL A +
Sbjct: 68 AGYSNVRLILDGHENLKQYIPKPLDAAI--FNFGWLPGGDKSLTTRTETSIAALSATLSL 125
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L G++ V+Y GH G++E EA+E +A++L + + ++ NR +P + +F++
Sbjct: 126 LKENGMLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLRYGFTNRKNSPPYLLVFEK 184
>gi|452990322|emb|CCQ98544.1| putative rRNA methylase ytqB [Clostridium ultunense Esp]
Length = 190
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 100/191 (52%), Gaps = 10/191 (5%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
IT + + + +GDTVVDATCGNG DTL + ++V + G VY DIQ AL+ T
Sbjct: 6 ITEMGHALLPFFISQGDTVVDATCGNGKDTLYLARLVGPK---GKVYAFDIQETALRKTR 62
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTK 199
L+K V H ++ V ++ A + FNLGYLPGGD + T + +T
Sbjct: 63 ERLEKERDPIAS--VHYILDDHRNIDAHVKEAPAA--ILFNLGYLPGGDHRITTQTSSTL 118
Query: 200 MALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQML---NRP 256
+A+E + +L GGL+ + Y GH G++E A+ + SLS D++ K L
Sbjct: 119 IAVEKSLTLLKQGGLLLITSYPGHEEGKKEAAALARYFSSLSWDNFRILKIGFLENHENS 178
Query: 257 LAPVLVFLFKR 267
AP ++ + KR
Sbjct: 179 QAPYILAVEKR 189
>gi|392429089|ref|YP_006470100.1| rRNA methylase [Streptococcus intermedius JTH08]
gi|419776560|ref|ZP_14302482.1| MraW methylase-like family protein [Streptococcus intermedius SK54]
gi|383845971|gb|EID83371.1| MraW methylase-like family protein [Streptococcus intermedius SK54]
gi|391758235|dbj|BAM23852.1| rRNA methylase [Streptococcus intermedius JTH08]
Length = 182
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 100/184 (54%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ K D V+DAT GNG+DTL + ++ A VY DIQ +AL+ T+
Sbjct: 8 AHAFLSEVITKEDIVIDATMGNGHDTLFLAQL------AKKVYAFDIQKQALEQTT---- 57
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K ++A+ V+L H + + + KST + FNLGYLP DKSVIT TT ALE
Sbjct: 58 KRLTEAKVDNVELLLTGHENVGQYI-KSTKAAI--FNLGYLPSADKSVITQPHTTIQALE 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L+ GG I++++Y GH GG E +AV F L ++ ++ +N+ P +
Sbjct: 115 KLCQCLVVGGRIAVMIYYGHIGGDVERDAVLDFVGQLPQQEFTVALYKTINQINYPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|154687178|ref|YP_001422339.1| hypothetical protein RBAM_027500 [Bacillus amyloliquefaciens FZB42]
gi|421730556|ref|ZP_16169682.1| hypothetical protein WYY_05704 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|154353029|gb|ABS75108.1| YtqB [Bacillus amyloliquefaciens FZB42]
gi|407074710|gb|EKE47697.1| hypothetical protein WYY_05704 [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 193
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K ++GD VDAT GNG+DT + +V + G V+ DIQ++AL T L
Sbjct: 13 LLKSAAQEGDITVDATMGNGHDTYFLAGLVGE---TGHVHAFDIQADALAKTKERLGADF 69
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLV--AFNLGYLPGGDKSVITTSETTKMALEA 204
S V L + H +++ +P+ R+ FNLGYLPGGDKS+ T +T A+E
Sbjct: 70 SPR----VTLHHKSHDQIKASLPEDAHGRVACAVFNLGYLPGGDKSITTNGHSTISAIEQ 125
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
+L GLI +VVY GHP G+ E A+ + +L + + LN+ P +
Sbjct: 126 LLELLKENGLIVLVVYHGHPEGKTEKSALLEYCSNLDQEKARVLSYGFLNQRNDPPFIIA 185
Query: 265 FKR 267
++
Sbjct: 186 IEK 188
>gi|331270275|ref|YP_004396767.1| hypothetical protein CbC4_2103 [Clostridium botulinum BKT015925]
gi|329126825|gb|AEB76770.1| conserved hypothetical protein [Clostridium botulinum BKT015925]
Length = 192
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 99/179 (55%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ D VDAT GNG DT+ + +V D +G VY D+Q EA+ +T K K
Sbjct: 24 LQHKDIAVDATMGNGNDTVFLASLVGD---SGTVYSFDVQKEAIDNTRK---KIIDNEIK 77
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
++L + H +++ + + V+LV FNLGYLP + + T ++TT +A++ + ++
Sbjct: 78 TNIQLIHDGHENIDKYINED--VKLVMFNLGYLPKAEHKITTKADTTLIAIKKSLNLIHK 135
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKF---QMLNRPLAPVLVFLFKR 267
G++ +V+Y GH G+ E AVE FA +L+ ++ K +N P P+L+ + KR
Sbjct: 136 NGVVLVVIYHGHENGKLEKVAVEEFASTLNQKEYNVMKLGFINQINNP--PILIAIEKR 192
>gi|414156032|ref|ZP_11412341.1| hypothetical protein HMPREF9186_00761 [Streptococcus sp. F0442]
gi|410872241|gb|EKS20185.1| hypothetical protein HMPREF9186_00761 [Streptococcus sp. F0442]
Length = 185
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 19/187 (10%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ K D VVDAT GNG+DT+ + ++ AG VY DIQ +AL +T L+
Sbjct: 8 AHQFLAEVITKEDVVVDATMGNGHDTVFLAQL------AGQVYAFDIQEQALANTQEKLE 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K + V+L H +++ V +++ FNLGYLP DKSVIT TT +E
Sbjct: 62 KLGLQH----VQLILDGHQHVDQYVE---TLKVAIFNLGYLPSADKSVITLPATT---IE 111
Query: 204 AAERI---LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
A E+I L GG +++++Y GH GG E +AV F L ++ ++ LN+ P
Sbjct: 112 AMEKICARLQKGGRMAIMIYYGHEGGDIERDAVLDFVSQLPQKEYTATIYRTLNQVNQPP 171
Query: 261 LVFLFKR 267
+ + ++
Sbjct: 172 FLVMIEK 178
>gi|23099763|ref|NP_693229.1| hypothetical protein OB2308 [Oceanobacillus iheyensis HTE831]
gi|22777993|dbj|BAC14264.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 191
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 14/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ +G+ V+DATCGNG DTL + ++V +G VY DIQ +A+++T L+K +
Sbjct: 23 ISEGEVVIDATCGNGNDTLFLSRVVG---KSGHVYAFDIQQQAIQNTKQALEKYHNNN-- 77
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI- 210
V L + H+ +E+ V + + FNLGYLP DKS+IT ++T +EA ++IL
Sbjct: 78 --VTLIHGSHALIEDYV-QHDVIGGAIFNLGYLPRSDKSIITKPDST---IEAIQKILTK 131
Query: 211 --PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
G+I +VVY GH GG E EAV +L + ++ +N+ P + ++
Sbjct: 132 LKKDGIIVIVVYYGHDGGTSEKEAVLKHVANLDQKLYNVLQYGFVNQKNYPPFILAIQK 190
>gi|357636532|ref|ZP_09134407.1| putative rRNA methylase [Streptococcus macacae NCTC 11558]
gi|357584986|gb|EHJ52189.1| putative rRNA methylase [Streptococcus macacae NCTC 11558]
Length = 183
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 14/178 (7%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK-TTSKA 149
V+ K T VDAT GNG DT + + A VY D+Q +AL+ T LD + A
Sbjct: 16 VLDKNSTAVDATMGNGNDTAFL------ANFAKKVYAFDVQKQALQKTKQRLDSLNITNA 69
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
E L H +E+ + + +R FNLGYLP DKS+IT ++TT +A+ + L
Sbjct: 70 E-----LILDGHQNLEQYIKEP--IRAAIFNLGYLPNADKSIITKADTTLLAITKILKQL 122
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG +++++Y GH GG++E +AV F L + +Q LN+ P + + ++
Sbjct: 123 EAGGRVAIMIYYGHTGGKQEKDAVLNFVSQLDQKQYTAMLYQPLNQMNKPPFLIMVEK 180
>gi|189426228|ref|YP_001953405.1| rRNA methylase [Geobacter lovleyi SZ]
gi|189422487|gb|ACD96885.1| putative rRNA methylase [Geobacter lovleyi SZ]
Length = 200
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 96/172 (55%), Gaps = 9/172 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ ++ G V+DATCGNG DTL++ ++V + G V+ DIQ EAL T+ L + +
Sbjct: 23 QRFIQSGSRVIDATCGNGKDTLLLAELVGE---TGHVWAFDIQQEALDRTAQRLAEQNLQ 79
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
V L + H R+ E+V + V FNLG+LPG + + T + TT ALEA+ ++
Sbjct: 80 QR---VSLLHAGHERLLELV--KPPLHGVVFNLGWLPGAAREIATGTATTLTALEASLQL 134
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAP 259
L P GL+ + Y GH GG +E AV+ +A SLS + + LN P AP
Sbjct: 135 LAPAGLVLVTCYPGHAGGDQEAAAVQKWAMSLSSRSYFVWRMGQLNVTPDAP 186
>gi|394992753|ref|ZP_10385525.1| YtqB [Bacillus sp. 916]
gi|393806413|gb|EJD67760.1| YtqB [Bacillus sp. 916]
Length = 193
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K ++GD VDAT GNG+DT + +V + G V+ DIQ++AL T L
Sbjct: 13 LLKSAAQEGDITVDATMGNGHDTYFLAGLVGE---TGHVHAFDIQADALAKTKERLGADF 69
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLV--AFNLGYLPGGDKSVITTSETTKMALEA 204
S V L + H +++ +P+ R+ FNLGYLPGGDKS+ T +T A+E
Sbjct: 70 SPR----VTLHHKSHDQIKASLPEDAHGRVACAVFNLGYLPGGDKSITTNGHSTISAIEQ 125
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
+L G+I +VVY GHP G+ E A+ + +L + + LN+ P +
Sbjct: 126 LLELLKENGMIVLVVYHGHPEGKTEKSALLEYCSNLDQEKARVLSYGFLNQRNDPPFIIA 185
Query: 265 FKR 267
++
Sbjct: 186 IEK 188
>gi|422820701|ref|ZP_16868894.1| rRNA methylase [Streptococcus sanguinis SK353]
gi|324991319|gb|EGC23252.1| rRNA methylase [Streptococcus sanguinis SK353]
Length = 183
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 95/186 (51%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQAVEKTHQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+E GL V+L H +++ A FNLGYLP DKSVIT +TT A
Sbjct: 61 -----SEAGLDNVQLILAGHEILDQYTDHFKAA---IFNLGYLPSADKSVITRPDTTLEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE R L GG ++++Y GH GG E +AV + L D+ ++ +N+ P
Sbjct: 113 LEKVCRGLEKGGRAAIMIYYGHEGGEVEKDAVLDYVSQLPQQDFTVALYKTINQINHPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|46447254|ref|YP_008619.1| hypothetical protein pc1620 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400895|emb|CAF24344.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 182
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157
++DATCGNG DTL + +++ + G VY D QS+A+ T LL + + + +
Sbjct: 1 MIDATCGNGNDTLKLCQLLL-SNGDGKVYAFDNQSDAIDKTKVLLREHLNLDQFKQINFI 59
Query: 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217
CHS+ + V +T ++L+ +NLGYLPGGDK T + TT ++L+ + ++ PGG+I +
Sbjct: 60 LGCHSKFSDYVLPNT-IKLIVYNLGYLPGGDKKKTTLTSTTLLSLQNSLNLIKPGGMICI 118
Query: 218 VVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
Y GH G E +A+ FA +L +W CC +NR +P L+ L K
Sbjct: 119 TCYPGHAEGLLEEKALLKFALNLPPMEWSCCYHSWINRRQSPSLLLLQK 167
>gi|296120812|ref|YP_003628590.1| rRNA methylase [Planctomyces limnophilus DSM 3776]
gi|296013152|gb|ADG66391.1| putative rRNA methylase [Planctomyces limnophilus DSM 3776]
Length = 196
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 107/190 (56%), Gaps = 9/190 (4%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
+T A+ + + ++ GD +DAT GNG+D + + V AG V+ D+Q +A+ ++
Sbjct: 6 LTTLAHELLRQHLQPGDFAIDATAGNGHDMEFLARTVG---PAGLVWAFDVQEQAIAAS- 61
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSET 197
+ S+A V+L + HS+M+ ++P+ +L A NLGYLPGGDKS+ TT+
Sbjct: 62 ---EYRRSQAGVNWVQLQQVSHSQMKAVIPEKYHGKLAAVMLNLGYLPGGDKSITTTATE 118
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
T ALE A +L GL+++++Y GHP G E +AV +A+ L + + PL
Sbjct: 119 TIAALEQALMLLSATGLLTVMLYPGHPAGAAETQAVREWAQGLPAYFEVKTQQYAERGPL 178
Query: 258 APVLVFLFKR 267
+ +L+ + KR
Sbjct: 179 SAILMTIHKR 188
>gi|375363451|ref|YP_005131490.1| hypothetical protein BACAU_2761 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|371569445|emb|CCF06295.1| hypothetical protein BACAU_2761 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
Length = 193
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 11/184 (5%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K ++GD VDAT GNG+DT + +V + G V+ DIQ++AL T L
Sbjct: 13 LLKSAAQEGDITVDATMGNGHDTYFLAGLVGE---TGHVHAFDIQADALAKTKERLG--- 66
Query: 147 SKAEKG-LVKLFNMCHSRMEEIVPKSTAVRLV--AFNLGYLPGGDKSVITTSETTKMALE 203
A+ G V L + H +++ +P+ R+ FNLGYLPGGDKS+ T +T A+E
Sbjct: 67 --ADFGPRVTLHHKSHDQIKASLPEDAHGRVACAVFNLGYLPGGDKSITTNGRSTISAIE 124
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L GLI +VVY GHP G+ E A+ + +L + + LN+ P +
Sbjct: 125 QLLELLKENGLIVLVVYHGHPEGKTEKSALLEYCSNLDQEKARVLSYGFLNQQNDPPFII 184
Query: 264 LFKR 267
++
Sbjct: 185 AIEK 188
>gi|73662312|ref|YP_301093.1| hypothetical protein SSP1003 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72494827|dbj|BAE18148.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 186
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 20/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TLI +HV V+DATCGNG DT + + V + G VY DIQ E
Sbjct: 8 PFARTLI-------QQHV-SDDSIVIDATCGNGNDTHFLAQQVPN----GNVYAFDIQDE 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
A+K T + + V + H+ ++ +P ++ A FNLGYLP GDKS+
Sbjct: 56 AIKQTQLKIHDFNN------VTIVQDSHANIQSYIPNYQQGKIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +E+T A+ A IL G+I +V+Y GH G+ E +A+ + + K+Q
Sbjct: 110 VTQAESTIAAINAIFNILSIEGIIILVIYHGHDEGKLERDAILDYLEQFDQNKAHILKYQ 169
Query: 252 MLNRPLAPVLV 262
+N+ P +
Sbjct: 170 FINQQNNPPFI 180
>gi|417918333|ref|ZP_12561885.1| MraW methylase-like family protein [Streptococcus parasanguinis
SK236]
gi|342828788|gb|EGU63154.1| MraW methylase-like family protein [Streptococcus parasanguinis
SK236]
Length = 185
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 98/187 (52%), Gaps = 19/187 (10%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ K D VVDAT GNG+DT + ++ AG VY DIQ +AL +T L+
Sbjct: 8 AHQFLAEVITKEDVVVDATMGNGHDTAFLAQL------AGQVYAFDIQEQALVNTQERLE 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K + V+L H +++ V ++ FNLGYLP DKSVIT TT +E
Sbjct: 62 KLGLQH----VRLILDGHQHVDQYVE---TLKAAIFNLGYLPSADKSVITLPATT---IE 111
Query: 204 AAERI---LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
A E+I L GG +++++Y GH GG E +AV F L D+ ++ LN+ P
Sbjct: 112 AMEKICARLEKGGRMAIMIYYGHEGGDIERDAVLDFVSQLPQKDYTATIYRTLNQVNQPP 171
Query: 261 LVFLFKR 267
+ + ++
Sbjct: 172 FLVMIEK 178
>gi|326202114|ref|ZP_08191984.1| rRNA methylase [Clostridium papyrosolvens DSM 2782]
gi|325987909|gb|EGD48735.1| rRNA methylase [Clostridium papyrosolvens DSM 2782]
Length = 188
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 95/169 (56%), Gaps = 8/169 (4%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
VV GDTVVDAT GNG+DT+ + ++V + G VY DIQ AL +T + L+ S+
Sbjct: 18 VVCNGDTVVDATAGNGHDTVFLARLVG---TGGQVYSFDIQESALNTTKNRLE---SENL 71
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V L + H M + V K ++ FNLGYLPGGD +V T TT A+++A +++
Sbjct: 72 LSRVNLIHDGHQNMMKHVNK--PIKAAMFNLGYLPGGDHNVGTRGGTTIEAVKSAMELVV 129
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
P G+IS+VVY G G +E V + +++ + + + +N+ P
Sbjct: 130 PHGIISIVVYYGGDSGFDEKNEVINYIKTIDCKKFSVMQTEFVNQINCP 178
>gi|323351031|ref|ZP_08086688.1| rRNA methylase [Streptococcus sanguinis VMC66]
gi|322122755|gb|EFX94464.1| rRNA methylase [Streptococcus sanguinis VMC66]
Length = 183
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 96/186 (51%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ K DTVVDAT GNG+DTL + ++ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVMTKEDTVVDATMGNGHDTLFLAQL------ARKVYAFDIQEQAVEKTRQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
AE GL +L H +++ + A FNLGYLP DKSVIT TT A
Sbjct: 61 -----AEAGLDNAQLILAGHETLDQYLDHFKAA---IFNLGYLPSADKSVITRPATTLEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE + L GG ++++Y GH GG E +AV F LS D+ ++ +N+ P
Sbjct: 113 LEKVCQGLEKGGRAAIMIYYGHEGGEVEKDAVLDFVSQLSQQDFTVALYKTINQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|312868433|ref|ZP_07728633.1| putative rRNA methylase [Streptococcus parasanguinis F0405]
gi|311096178|gb|EFQ54422.1| putative rRNA methylase [Streptococcus parasanguinis F0405]
Length = 185
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 99/187 (52%), Gaps = 19/187 (10%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + V+ K D VVDAT GNG+DT + ++ AG VY DIQ +AL +T L+
Sbjct: 8 AHQFLEEVITKEDVVVDATMGNGHDTAFLAQL------AGQVYAFDIQEQALVNTQERLE 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K + V+L H +++ V ++ FNLGYLP DKSVIT TT +E
Sbjct: 62 KLGLQH----VQLILDGHQHVDQYVE---TLKAAIFNLGYLPSADKSVITLPVTT---IE 111
Query: 204 AAERI---LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
A E+I L GG +++++Y GH GG E +AV F L D+ ++ LN+ P
Sbjct: 112 AMEKICARLEKGGRMAIMIYYGHEGGDIERDAVLDFVSQLPQKDYTATIYRTLNQVNQPP 171
Query: 261 LVFLFKR 267
+ + ++
Sbjct: 172 FLVMIEK 178
>gi|77413361|ref|ZP_00789555.1| conserved hypothetical protein [Streptococcus agalactiae 515]
gi|77160603|gb|EAO71720.1| conserved hypothetical protein [Streptococcus agalactiae 515]
Length = 188
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 94/177 (53%), Gaps = 12/177 (6%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+ K +DAT GNG DT+ + K S+ VY DIQ EA+ T + K T +
Sbjct: 16 VIDKEAITLDATMGNGNDTVFLAK------SSKKVYAFDIQEEAIAKTKA---KLTGQGI 66
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V+L H +E+ V T +R FNLGYLP DK+VIT TT A++ IL
Sbjct: 67 SN-VELILDGHENLEQYV--HTPLRAAIFNLGYLPSADKTVITKPHTTIKAIKNVLDILE 123
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG +S++VY GH GG+ E +AV AF L +++ +Q LN+ P + + ++
Sbjct: 124 VGGRLSLMVYYGHDGGKSEKDAVIAFVEQLPQNNFATMLYQPLNQVNTPPFLIMVEK 180
>gi|384266589|ref|YP_005422296.1| hypothetical protein BANAU_2959 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385265940|ref|ZP_10044027.1| Putative rRNA methylase [Bacillus sp. 5B6]
gi|429506334|ref|YP_007187518.1| hypothetical protein B938_14190 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|380499942|emb|CCG50980.1| hypothetical protein BANAU_2959 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385150436|gb|EIF14373.1| Putative rRNA methylase [Bacillus sp. 5B6]
gi|429487924|gb|AFZ91848.1| hypothetical protein B938_14190 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 193
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 11/184 (5%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K ++GD VDAT GNG+DT + +V + G V+ DIQ++AL T L
Sbjct: 13 LLKSAAQEGDITVDATMGNGHDTYFLAGLVGE---TGHVHAFDIQADALAKTKERLG--- 66
Query: 147 SKAEKG-LVKLFNMCHSRMEEIVPKSTAVRLV--AFNLGYLPGGDKSVITTSETTKMALE 203
A+ G V L + H +++ +P+ R+ FNLGYLPGGDKS+ T +T A+E
Sbjct: 67 --ADFGPRVTLHHKSHDQIKASLPEDAHGRVACAVFNLGYLPGGDKSITTNGHSTISAIE 124
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L GLI +VVY GHP G+ E A+ + +L + + LN+ P +
Sbjct: 125 QLLELLKENGLIVLVVYHGHPEGKTEKSALLEYCSNLDQEKARVLSYGFLNQRNDPPFII 184
Query: 264 LFKR 267
++
Sbjct: 185 AIEK 188
>gi|387899644|ref|YP_006329940.1| putative rRNA methyltransferase [Bacillus amyloliquefaciens Y2]
gi|387173754|gb|AFJ63215.1| putative rRNA methyltransferase [Bacillus amyloliquefaciens Y2]
Length = 190
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 11/184 (5%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K ++GD VDAT GNG+DT + +V + G V+ DIQ++AL T L
Sbjct: 10 LLKSAAQEGDITVDATMGNGHDTYFLAGLVGE---TGHVHAFDIQADALAKTKERLG--- 63
Query: 147 SKAEKG-LVKLFNMCHSRMEEIVPKSTAVRLV--AFNLGYLPGGDKSVITTSETTKMALE 203
A+ G V L + H +++ +P+ R+ FNLGYLPGGDKS+ T +T A+E
Sbjct: 64 --ADFGPRVTLHHKSHDQIKASLPEDAHGRVACAVFNLGYLPGGDKSITTNGHSTISAIE 121
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L GLI +VVY GHP G+ E A+ + +L + + LN+ P +
Sbjct: 122 QLLELLKENGLIVLVVYHGHPEGKTEKSALLEYCSNLDQEKARVLSYGFLNQRNDPPFII 181
Query: 264 LFKR 267
++
Sbjct: 182 AIEK 185
>gi|389819290|ref|ZP_10209225.1| hypothetical protein A1A1_14424 [Planococcus antarcticus DSM 14505]
gi|388463440|gb|EIM05796.1| hypothetical protein A1A1_14424 [Planococcus antarcticus DSM 14505]
Length = 187
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 11/173 (6%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ + V GD+V+D T GNG+DT + + ++G V+ DIQ+EA+++T +
Sbjct: 13 LLEQAVSPGDSVIDGTAGNGHDTHFLAGLTG---ASGKVFAFDIQAEAIEATGERVKDFQ 69
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
V L H+++++ V + + FNLGYLP GD ++IT +++T ALE
Sbjct: 70 Q------VTLVYDSHAKIKDYV--TELISAAVFNLGYLPKGDHNIITKAQSTLAALEQCL 121
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
+L G++ +VVY GH GG EE +AV F +L + K++ +N+ +P
Sbjct: 122 DLLKIQGVLLVVVYSGHEGGSEERDAVTEFVSTLPQKSFDVLKYEFINQQHSP 174
>gi|337282506|ref|YP_004621977.1| rRNA methylase [Streptococcus parasanguinis ATCC 15912]
gi|335370099|gb|AEH56049.1| rRNA methylase [Streptococcus parasanguinis ATCC 15912]
Length = 185
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 98/187 (52%), Gaps = 19/187 (10%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ K D VVDAT GNG+DT + K+ AG VY DIQ +AL +T L+
Sbjct: 8 AHQFLAEVITKEDVVVDATMGNGHDTAFLAKL------AGQVYAFDIQEQALVNTQERLE 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K + V+L H +++ V ++ FNLGYLP DKSVIT TT +E
Sbjct: 62 KLGLQH----VQLILDGHQHVDQYVE---TLKAAIFNLGYLPSADKSVITLPATT---IE 111
Query: 204 AAERI---LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
A E+I L GG +++++Y GH GG E +AV F L ++ ++ LN+ P
Sbjct: 112 AMEKICARLEKGGRMALMIYYGHEGGDIERDAVLDFVSQLPQKEYTATIYRTLNQVNQPP 171
Query: 261 LVFLFKR 267
+ + ++
Sbjct: 172 FLVMIEK 178
>gi|403237866|ref|ZP_10916452.1| rRNA methylase [Bacillus sp. 10403023]
Length = 190
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 14/189 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + + +GD VDAT GNG+DT M+ +V + G V+G DIQ EA+ +T++ L
Sbjct: 10 ARNLLQRAINEGDYAVDATIGNGHDTAMLASLVGE---TGHVFGFDIQKEAIDNTTARL- 65
Query: 144 KTTSKAEKGL---VKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETT 198
E+ L V LF+ H ++ +P T + FNLGYLPGG+K ++T +T
Sbjct: 66 -----REQDLLNRVSLFHKSHDQLLTTIPTETHGNISGAVFNLGYLPGGNKEIVTKPTST 120
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+E ++ P G+I +VVY GH G E + + + +L +Q +N+
Sbjct: 121 IEAIEHLLSVMKPEGIIVIVVYHGHEEGAIERDRLLDYCSTLDQKRAHVLMYQFMNQINN 180
Query: 259 PVLVFLFKR 267
P + ++
Sbjct: 181 PPFIIAIEK 189
>gi|451345813|ref|YP_007444444.1| hypothetical protein KSO_005330 [Bacillus amyloliquefaciens IT-45]
gi|449849571|gb|AGF26563.1| hypothetical protein KSO_005330 [Bacillus amyloliquefaciens IT-45]
Length = 193
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 11/184 (5%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K ++GD VDAT GNG+DT + +V + G V+ DIQ++AL T L
Sbjct: 13 LLKSAAQEGDITVDATMGNGHDTYFLAGLVGE---TGHVHAFDIQADALAKTKERLG--- 66
Query: 147 SKAEKG-LVKLFNMCHSRMEEIVPKSTAVRLV--AFNLGYLPGGDKSVITTSETTKMALE 203
A+ G V L + H +++ +P+ R+ FNLGYLPGGDKS+ T +T A+E
Sbjct: 67 --ADFGPRVTLHHKSHDQIKASLPEDAHGRVACAVFNLGYLPGGDKSITTNGRSTISAIE 124
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L GLI +VVY GHP G+ E A+ + +L + + LN+ P +
Sbjct: 125 QLLELLKENGLIVLVVYHGHPEGKTEKSALLEYCSNLDQEKARVLSYGFLNQRNDPPFII 184
Query: 264 LFKR 267
++
Sbjct: 185 AIEK 188
>gi|419799264|ref|ZP_14324623.1| MraW methylase-like family protein [Streptococcus parasanguinis
F0449]
gi|385698397|gb|EIG28762.1| MraW methylase-like family protein [Streptococcus parasanguinis
F0449]
Length = 185
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 98/187 (52%), Gaps = 19/187 (10%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ V+ K D VVDAT GNG+DT + K+ AG VY DIQ +AL +T L+
Sbjct: 8 AHQFLAEVITKEDVVVDATMGNGHDTAFLAKL------AGQVYAFDIQEQALVNTQERLE 61
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
K + V+L H +++ V ++ FNLGYLP DKSVIT TT +E
Sbjct: 62 KLGLQH----VQLILDGHQHVDQYVE---TLKAAIFNLGYLPSADKSVITLPATT---IE 111
Query: 204 AAERI---LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
A ++I L GG +++++Y GH GG E +AV F L D+ ++ LN+ P
Sbjct: 112 AMKKICTRLEKGGRMAIMIYYGHEGGDIERDAVLDFVSQLPQKDYTATIYRTLNQVNQPP 171
Query: 261 LVFLFKR 267
+ + ++
Sbjct: 172 FLVMIEK 178
>gi|322385960|ref|ZP_08059600.1| rRNA methylase [Streptococcus cristatus ATCC 51100]
gi|417922402|ref|ZP_12565890.1| putative rRNA methylase [Streptococcus cristatus ATCC 51100]
gi|321269943|gb|EFX52863.1| rRNA methylase [Streptococcus cristatus ATCC 51100]
gi|342832499|gb|EGU66794.1| putative rRNA methylase [Streptococcus cristatus ATCC 51100]
Length = 182
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + ++ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDVVVDATMGNGHDTLFLAQL------AKQVYAFDIQEQAVEKTRQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
AE GL +L H +++ A FNLGYLP DKSVIT TT A
Sbjct: 61 -----AEAGLDNAQLILAGHETLDQYTDHFKAA---IFNLGYLPSADKSVITRPATTLEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE R L GG ++++Y GH GG E +AV F L D+ ++ +N+ P
Sbjct: 113 LEKVCRGLEKGGRAAIMIYYGHEGGEVEKDAVLDFVSQLPQQDFTVALYKTINQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|418575849|ref|ZP_13139996.1| hypothetical protein SSME_10520 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325597|gb|EHY92728.1| hypothetical protein SSME_10520 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 186
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 20/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TLI +HV V+DATCGNG DT + + V + G VY DIQ E
Sbjct: 8 PFARTLI-------QQHV-SDDSIVIDATCGNGNDTHFLAQQVPN----GNVYAFDIQDE 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
A+K T + + V + H+ ++ +P ++ A FNLGYLP GDKS+
Sbjct: 56 AIKQTQLKIHDFNN------VTIVQDSHANIQSYIPNCQQGKIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +E+T A+ A IL G+I +V+Y GH G+ E +A+ + + K+Q
Sbjct: 110 VTQAESTIAAINAIFNILSIEGIIILVIYHGHDEGKLERDAILDYLEQFDQNKAHILKYQ 169
Query: 252 MLNRPLAPVLV 262
+N+ P +
Sbjct: 170 FINQQNNPPFI 180
>gi|299143842|ref|ZP_07036922.1| putative rRNA methylase [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298518327|gb|EFI42066.1| putative rRNA methylase [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 188
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
G +DATCG G D+L +L + G +Y DIQ EA+ ST LL SK +
Sbjct: 23 GKVCLDATCGRGNDSLKLLDKIG---IKGFLYACDIQEEAINSTMELL---KSKGYENF- 75
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGL 214
KLFN H+ + + + + + L+ +NLGYLP DK V+T +++T +++E + G+
Sbjct: 76 KLFNKSHTEVFDYIKE--PISLIIYNLGYLPKSDKKVVTEADSTILSIERGLNSISKDGI 133
Query: 215 ISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
I +V Y+GH G EE A+E F L +++ K + N+ P +V+L
Sbjct: 134 IIVVSYLGHEGSFEERAALEKFLSQLEQKEYMVEKREFFNQQNNPPIVYL 183
>gi|325663507|ref|ZP_08151917.1| hypothetical protein HMPREF0490_02658 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470406|gb|EGC73637.1| hypothetical protein HMPREF0490_02658 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 187
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V +GD +DAT GNG+DTL++ ++V ++G V DIQ +A++ T +DK AE+
Sbjct: 18 VLEGDICIDATAGNGHDTLLLAELVG---ASGRVIAFDIQEQAVQETKRKIDKC-GYAER 73
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V L + H K V + FN GYLPGGD ++ T ++T+ A+E R+L
Sbjct: 74 TEVVLDSHVHMGA---YAKENTVSCITFNFGYLPGGDHTLATKADTSVQAIEEGLRLLKK 130
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFLFK 266
GL+S+ +Y G G EE E + A+ + L ++ + NRP PV F+ K
Sbjct: 131 DGLMSLCIYSGGDSGFEEKERILAYLKELDPKKYLVIVSEYYNRPNHPPVPAFVIK 186
>gi|258515775|ref|YP_003191997.1| putative rRNA methylase [Desulfotomaculum acetoxidans DSM 771]
gi|257779480|gb|ACV63374.1| putative rRNA methylase [Desulfotomaculum acetoxidans DSM 771]
Length = 209
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 89/179 (49%), Gaps = 9/179 (5%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA 149
++ G +DAT G G DTL + V +G ++ DIQ +A+ + K +
Sbjct: 18 EILFDGSVAIDATVGTGEDTLFLASSVG---PSGQIFAFDIQEQAIAAAEQ---KIKQRH 71
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VK + H + +V V V FNLGYLPGGD S+IT +E+T AL + +L
Sbjct: 72 LDKRVKFYLASHEALVSLV--KVKVNAVMFNLGYLPGGDHSIITKAESTLAALCQSMELL 129
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLFKR 267
+PGG IS+V+Y GH G EE AVE + L + K NR +P L+ + K
Sbjct: 130 LPGGRISIVLYTGHEGSLEECTAVEKYVSKLDNKLYNVIKLNFYNRKNPSPFLILIEKE 188
>gi|168187189|ref|ZP_02621824.1| possible rRNA methylase [Clostridium botulinum C str. Eklund]
gi|169294843|gb|EDS76976.1| possible rRNA methylase [Clostridium botulinum C str. Eklund]
Length = 189
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 104/181 (57%), Gaps = 17/181 (9%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL--DKTTSKA 149
+++GD VDAT GNG DT+ + ++V + +G VY D+QS A+++T + +K +K
Sbjct: 21 LQEGDIAVDATMGNGNDTVFLARLVGE---SGKVYSFDVQSTAIENTKKRIIDNKINTKI 77
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
E L + H +++ + + ++LV FNLGYLP + ++ T +ETT A++ + +L
Sbjct: 78 E-----LIHDGHENIDKYI--NEKLKLVMFNLGYLPSSEHNITTKAETTIGAVKKSLAML 130
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKF---QMLNRPLAPVLVFLFK 266
G++ +V+Y GH G+ E A+E F +L+ ++ K +N P P+L+ + K
Sbjct: 131 EKNGVVLLVIYHGHENGKLEKVAIEEFTSNLNQKEYNVMKLGFINQINNP--PILIAIEK 188
Query: 267 R 267
R
Sbjct: 189 R 189
>gi|412985721|emb|CCO19167.1| rRNA methylase [Bathycoccus prasinos]
Length = 275
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 112/237 (47%), Gaps = 32/237 (13%)
Query: 55 QKQSCSTNNCTPLPLCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLK 114
Q+ + S N L +S LS +T A+ + + VR D VVD TCG G DTL+ L+
Sbjct: 46 QQHTYSKENDDVLA---NSILSNGKVTKIAHQLLRSCVRADDVVVDLTCGRGTDTLLFLE 102
Query: 115 MVADESSAGCVYGLDIQSEALKSTSSLL---------DKTTSKAEKGLVKLFNMCHSRME 165
+V + G + LDIQ EAL T + D+ K + V CHS E
Sbjct: 103 LV---KADGLIVSLDIQQEALDITRRRIREEFCEHISDEAERKKIEERVYFARTCHSVFE 159
Query: 166 EIVP-------------KSTAVRLVAFNLGYLPGGD--KSVITTSETTKMALEAAERILI 210
+V + + NLGYL G D KS++T + TT AL+ A ++L
Sbjct: 160 SVVDGIAEKKGKKKSETNEIEIGAITMNLGYLTGKDTDKSIVTRTRTTLEALDKASKLLR 219
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GGLI++ Y GH GG EE +AV F + + K +LNR PVL+ +++
Sbjct: 220 VGGLITICCYRGHEGGSEETDAVLDFVSRFPPEITV-TKIDVLNRS-GPVLLSCYRQ 274
>gi|313890849|ref|ZP_07824473.1| putative rRNA methylase [Streptococcus pseudoporcinus SPIN 20026]
gi|416852330|ref|ZP_11909475.1| MraW methylase-like family protein [Streptococcus pseudoporcinus LQ
940-04]
gi|313120747|gb|EFR43862.1| putative rRNA methylase [Streptococcus pseudoporcinus SPIN 20026]
gi|356739819|gb|EHI65051.1| MraW methylase-like family protein [Streptococcus pseudoporcinus LQ
940-04]
Length = 183
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 13/170 (7%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157
+VDAT GNG DTL V +Y D+Q +AL+ T L KA+ V+L
Sbjct: 23 LVDATMGNGNDTLYFAPKVK------SLYAFDVQKKALQVTGEKL----QKAQLENVQLI 72
Query: 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217
H +++ + + A FNLGYLP DKSVIT +ETT AL RIL GG I++
Sbjct: 73 QDGHEKVDTYLDHADAA---IFNLGYLPNADKSVITRAETTIEALRKLLRILRVGGRIAI 129
Query: 218 VVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+VY GH GGR+E +A+ A+ L + +Q LN+ P + + ++
Sbjct: 130 MVYYGHEGGRKEKDALLAYLSQLPQEKVAVMSYQALNQKNCPPFLLMLEK 179
>gi|220929163|ref|YP_002506072.1| rRNA methylase [Clostridium cellulolyticum H10]
gi|219999491|gb|ACL76092.1| putative rRNA methylase [Clostridium cellulolyticum H10]
Length = 188
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 94/171 (54%), Gaps = 12/171 (7%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
VV GD VVDAT GNG+DT + K+V + G VY DIQ AL +T + L+ AE
Sbjct: 18 VVCNGDIVVDATAGNGHDTAFLAKLVG---AGGLVYSFDIQESALNTTRNKLE-----AE 69
Query: 151 KGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
L V L + H M + V K ++ FNLGYLPGGD ++ T TT A+++A +
Sbjct: 70 NLLNRVNLIHDGHQNMMKYVNK--PIKAAMFNLGYLPGGDHNIGTRGGTTIEAIKSAMEL 127
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
++P G+IS+VVY G G +E V + +++ + + + +N+ P
Sbjct: 128 VVPHGIISIVVYYGGDSGFDEKNEVINYIKTIDCKKFSVMQTEFVNQINCP 178
>gi|421537700|ref|ZP_15983883.1| putative rRNA methyltransferase [Neisseria meningitidis 93003]
gi|402318367|gb|EJU53890.1| putative rRNA methyltransferase [Neisseria meningitidis 93003]
Length = 188
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 96/179 (53%), Gaps = 9/179 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ + +G +D T GNG+DTL + + G V+ DIQ +AL +T L +
Sbjct: 15 RKALPEGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALNNTRCRL----QE 67
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A V+L H +++ +P+ + FN G+LPGGDK++ T ET+ AL A +
Sbjct: 68 AGYSNVRLILDGHENLKQYIPEPLDAAI--FNFGWLPGGDKNLTTDKETSIAALSATLSL 125
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L G++ V+Y GH G++E EA+E +A++L + + ++ NR +P + +F++
Sbjct: 126 LKENGMLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLRYGFTNRKNSPPYLLVFEK 184
>gi|422857863|ref|ZP_16904513.1| rRNA methylase [Streptococcus sanguinis SK1057]
gi|327462037|gb|EGF08366.1| rRNA methylase [Streptococcus sanguinis SK1057]
Length = 183
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 94/186 (50%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDVVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQAVEKTRQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
AE GL +L H +++ + + FNLGYLP DKSVIT TT A
Sbjct: 61 -----AEAGLDNAQLILAGHETLDQY---TNHFKAAIFNLGYLPSADKSVITRPATTLEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
L A + L GG ++++Y GH GG E +AV F L D+ ++ +N+ P
Sbjct: 113 LGKACQGLAKGGRAAIMIYYGHDGGEVEKDAVLDFVSQLPQQDFTVALYKTINQINHPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|422884681|ref|ZP_16931129.1| rRNA methylase [Streptococcus sanguinis SK49]
gi|332359111|gb|EGJ36932.1| rRNA methylase [Streptococcus sanguinis SK49]
Length = 183
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 94/184 (51%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQAVEKTRQRL- 60
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++A+ +L H M++ A FNLGYLP DKSVIT +TT AL+
Sbjct: 61 ---AEADLDNAQLILAGHETMDQYTDHFKAA---IFNLGYLPSADKSVITRPDTTLEALK 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L GG ++++Y GH GG E +AV F L D+ ++ +N+ P +
Sbjct: 115 KVCQGLEKGGRAAIMIYYGHEGGEVEKDAVLDFVSQLPQQDFTVALYKTINQINNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|433536436|ref|ZP_20492944.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
77221]
gi|432274386|gb|ELL29474.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
77221]
Length = 188
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 9/179 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ + +G +D T GNG+DTL + + G V+ DIQ +AL +T L +
Sbjct: 15 RKALPEGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALNNTRCRL----QE 67
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A V+L H +++ V S + FN G+LPGGDKS+ T +ET+ AL A +
Sbjct: 68 AGYSNVRLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTHTETSIPALCATLSL 125
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG++ V+Y GH G++E EA+E +A++L + + ++ NR +P + F++
Sbjct: 126 LKEGGMLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLRYGFTNRKNSPPYLLAFEK 184
>gi|452856681|ref|YP_007498364.1| putative RNA methylase [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|452080941|emb|CCP22708.1| putative RNA methylase [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 193
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 94/184 (51%), Gaps = 11/184 (5%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K ++GD VDAT GNG+DT + +V + G V+ DIQ++AL T L
Sbjct: 13 LLKSAAQEGDITVDATMGNGHDTYFLAGLVGE---TGHVHAFDIQADALAKTKERLG--- 66
Query: 147 SKAEKG-LVKLFNMCHSRMEEIVPKSTAVRLV--AFNLGYLPGGDKSVITTSETTKMALE 203
A+ G V L H +++ +P+ R+ FNLGYLPGGDKS+ T +T A+E
Sbjct: 67 --ADFGPRVTLHLKSHDQIKASLPEDAHGRVACAVFNLGYLPGGDKSITTNGHSTISAIE 124
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+L GLI +VVY GHP G+ E A+ + +L + + LN+ P +
Sbjct: 125 QLLELLKENGLIVLVVYHGHPEGKTEKSALLEYCSNLDQEKARVLSYGFLNQRNDPPFII 184
Query: 264 LFKR 267
++
Sbjct: 185 AIEK 188
>gi|349609884|ref|ZP_08889253.1| hypothetical protein HMPREF1028_01228 [Neisseria sp. GT4A_CT1]
gi|348611080|gb|EGY60751.1| hypothetical protein HMPREF1028_01228 [Neisseria sp. GT4A_CT1]
Length = 189
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 12/186 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + K ++ +D T GNG DTLM+ + + S G V+ D+Q +AL +T L+
Sbjct: 10 AHSLLKQALKPDARALDGTAGNGNDTLMLARSIG---SGGKVWAFDVQEQALANTRMRLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ A++ V+L H + + P AV FN G+LPGGDKS T + T+ A
Sbjct: 67 EA-GMADR--VELILDGHENLASHIREPLDAAV----FNFGWLPGGDKSCTTKAATSIRA 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
L +A +L GGL V+Y GH G+ E +A+E +AR L D++ ++ +NR P
Sbjct: 120 LASALSLLKTGGLAVAVLYPGHEAGQHEAQAIEDWARQLPQDEFAVLRYGFINRRNRPPY 179
Query: 262 VFLFKR 267
+ F++
Sbjct: 180 LLAFEK 185
>gi|385342248|ref|YP_005896119.1| putative rRNA methylase [Neisseria meningitidis M01-240149]
gi|385856905|ref|YP_005903417.1| putative rRNA methylase [Neisseria meningitidis NZ-05/33]
gi|421554511|ref|ZP_16000452.1| putative rRNA methyltransferase [Neisseria meningitidis 98008]
gi|325202454|gb|ADY97908.1| putative rRNA methylase [Neisseria meningitidis M01-240149]
gi|325207794|gb|ADZ03246.1| putative rRNA methylase [Neisseria meningitidis NZ-05/33]
gi|402332471|gb|EJU67796.1| putative rRNA methyltransferase [Neisseria meningitidis 98008]
Length = 188
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 9/179 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ + +G +D T GNG+DTL + + G V+ DIQ +AL +T L +
Sbjct: 15 RQALPEGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALNNTRCRL----QE 67
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A V+ H +++ +PK + FN G+LPGGDKS+ T +ET+ AL A +
Sbjct: 68 AGYSNVRFILDGHENLKQYIPKPLDAAI--FNFGWLPGGDKSLTTRTETSIAALSATLSL 125
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L G++ V+Y GH G++E EAV +A++L + + ++ NR +P + F++
Sbjct: 126 LKENGMLIAVLYPGHENGKQEAEAVGQWAKNLPQEQFAVLRYGFTNRKNSPPYLLAFEK 184
>gi|385324495|ref|YP_005878934.1| putative rRNA methyltransferase [Neisseria meningitidis 8013]
gi|261392882|emb|CAX50463.1| putative rRNA methyltransferase [Neisseria meningitidis 8013]
Length = 188
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 94/174 (54%), Gaps = 9/174 (5%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
+G +D T GNG+DTL + + G V+ DIQ +AL T L + +
Sbjct: 20 EGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALSRTRCRLKEARYEN---- 72
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
V+L H +++ V S + FN G+LPGGDKS+ T +ET+ AL A +L GG
Sbjct: 73 VQLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTHTETSIPALCATLSLLKEGG 130
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
++ V+Y GH G++E EA+E +A++L + + ++ NR +P + +F++
Sbjct: 131 MLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLRYGFTNRKNSPPYLLVFEK 184
>gi|403668530|ref|ZP_10933795.1| SAM-dependent methyltransferase [Kurthia sp. JC8E]
Length = 192
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 96/184 (52%), Gaps = 30/184 (16%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS------LLDKTTSK 148
GD VDAT GNG+DTL + K+V D G V+ D+Q +AL +T++ L ++TT
Sbjct: 21 GDVAVDATAGNGHDTLYLAKLVGD---TGHVFAFDVQQQALDATAARLKEHELFERTT-- 75
Query: 149 AEKGLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
L H ++++ V P A+ FNLGYLPG D +V T +TT ++A
Sbjct: 76 -------LILDGHEKVKQYVEEPIGGAI----FNLGYLPGADHTVTTHGQTT---IDAIN 121
Query: 207 RILIP---GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
++L+ G+I +VVY GH GG+EE +AV F L ++ LN+ P +
Sbjct: 122 QLLVRLKINGIIVLVVYHGHEGGKEERDAVLHFVEQLPQKQVHVLRYDFLNQKNDPPFII 181
Query: 264 LFKR 267
++
Sbjct: 182 ALEK 185
>gi|422823028|ref|ZP_16871216.1| rRNA methylase [Streptococcus sanguinis SK405]
gi|422826891|ref|ZP_16875070.1| rRNA methylase [Streptococcus sanguinis SK678]
gi|422854839|ref|ZP_16901503.1| rRNA methylase [Streptococcus sanguinis SK160]
gi|422864925|ref|ZP_16911550.1| rRNA methylase [Streptococcus sanguinis SK1058]
gi|324993678|gb|EGC25597.1| rRNA methylase [Streptococcus sanguinis SK405]
gi|324995009|gb|EGC26922.1| rRNA methylase [Streptococcus sanguinis SK678]
gi|325696334|gb|EGD38225.1| rRNA methylase [Streptococcus sanguinis SK160]
gi|327490109|gb|EGF21897.1| rRNA methylase [Streptococcus sanguinis SK1058]
Length = 183
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 95/186 (51%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K DTVVDAT GNG+DTL + ++ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDTVVDATMGNGHDTLFLAQL------AKQVYAFDIQEQAVEKTRQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+E GL +L H +++ A FNLGYLP DKSVIT +TT A
Sbjct: 61 -----SEAGLDNAQLILSGHESLDQYTDHFKAA---IFNLGYLPSADKSVITRPDTTLEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
L+ + L GG ++++Y GH GG E +AV F L D+ ++ +N+ P
Sbjct: 113 LKKVCQGLEKGGRAAIMIYYGHEGGEVEKDAVLDFVSQLPQQDFTVALYKTINQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|254804629|ref|YP_003082850.1| putative rRNA methylase [Neisseria meningitidis alpha14]
gi|416163017|ref|ZP_11606896.1| putative rRNA methylase [Neisseria meningitidis N1568]
gi|421550301|ref|ZP_15996306.1| putative rRNA methyltransferase [Neisseria meningitidis 69166]
gi|433471103|ref|ZP_20428494.1| hypothetical protein NM68094_0766 [Neisseria meningitidis 68094]
gi|433473153|ref|ZP_20430517.1| hypothetical protein NM97021_0731 [Neisseria meningitidis 97021]
gi|433477236|ref|ZP_20434559.1| hypothetical protein NM70012_0626 [Neisseria meningitidis 70012]
gi|433481702|ref|ZP_20438967.1| hypothetical protein NM2006087_0866 [Neisseria meningitidis
2006087]
gi|433483688|ref|ZP_20440916.1| hypothetical protein NM2002038_0719 [Neisseria meningitidis
2002038]
gi|433485887|ref|ZP_20443088.1| hypothetical protein NM97014_0828 [Neisseria meningitidis 97014]
gi|433521575|ref|ZP_20478270.1| hypothetical protein NM61103_0746 [Neisseria meningitidis 61103]
gi|433525620|ref|ZP_20482254.1| hypothetical protein NM69096_0698 [Neisseria meningitidis 69096]
gi|433538628|ref|ZP_20495108.1| hypothetical protein NM70030_0825 [Neisseria meningitidis 70030]
gi|254668171|emb|CBA04853.1| putative rRNA methylase [Neisseria meningitidis alpha14]
gi|325127866|gb|EGC50772.1| putative rRNA methylase [Neisseria meningitidis N1568]
gi|389606171|emb|CCA45084.1| hypothetical protein NMALPHA522_1543 [Neisseria meningitidis
alpha522]
gi|402330516|gb|EJU65863.1| putative rRNA methyltransferase [Neisseria meningitidis 69166]
gi|432209592|gb|ELK65559.1| hypothetical protein NM68094_0766 [Neisseria meningitidis 68094]
gi|432210754|gb|ELK66710.1| hypothetical protein NM97021_0731 [Neisseria meningitidis 97021]
gi|432216458|gb|ELK72339.1| hypothetical protein NM70012_0626 [Neisseria meningitidis 70012]
gi|432217533|gb|ELK73401.1| hypothetical protein NM2006087_0866 [Neisseria meningitidis
2006087]
gi|432221391|gb|ELK77201.1| hypothetical protein NM2002038_0719 [Neisseria meningitidis
2002038]
gi|432222933|gb|ELK78715.1| hypothetical protein NM97014_0828 [Neisseria meningitidis 97014]
gi|432260348|gb|ELL15607.1| hypothetical protein NM61103_0746 [Neisseria meningitidis 61103]
gi|432261811|gb|ELL17056.1| hypothetical protein NM69096_0698 [Neisseria meningitidis 69096]
gi|432274636|gb|ELL29723.1| hypothetical protein NM70030_0825 [Neisseria meningitidis 70030]
Length = 188
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ + +G +D T GNG+DTL + + G V+ DIQ +AL T L + +
Sbjct: 15 RQALPEGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALSRTRCRLKEARYE 71
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
V+L H +++ V S + FN G+LPGGDKS+ T +ET+ AL A +
Sbjct: 72 N----VQLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTHTETSIPALCATLSL 125
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG++ V+Y GH G++E EA+E +A++L + + ++ NR +P + F++
Sbjct: 126 LKEGGMLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLRYGFTNRKNSPPYLLAFEK 184
>gi|357639241|ref|ZP_09137114.1| putative rRNA methylase [Streptococcus urinalis 2285-97]
gi|418418089|ref|ZP_12991280.1| hypothetical protein HMPREF9318_02028 [Streptococcus urinalis
FB127-CNA-2]
gi|357587695|gb|EHJ57103.1| putative rRNA methylase [Streptococcus urinalis 2285-97]
gi|410869188|gb|EKS17151.1| hypothetical protein HMPREF9318_02028 [Streptococcus urinalis
FB127-CNA-2]
Length = 181
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 89/178 (50%), Gaps = 12/178 (6%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA 149
V+ K VVDAT GNG DT + + + VY DIQ EA++ T++ L K
Sbjct: 14 QVIDKESIVVDATMGNGNDTAFLAAI------SKYVYAFDIQEEAIQKTNTKLLNLGLKN 67
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + + + ++ FNLGYLP DKS+IT S+TT A+ +L
Sbjct: 68 ----VKLIRDGHENISNYIDR--PIKAAIFNLGYLPNADKSIITQSDTTITAISTILELL 121
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG +S++VY GH GG +E AV F SL + + LN+ P + + ++
Sbjct: 122 EIGGRVSVMVYYGHEGGNDEKSAVLEFVSSLDQQQFAVSSYAPLNQKNTPPFLVMIEK 179
>gi|282911386|ref|ZP_06319188.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus WBG10049]
gi|384867276|ref|YP_005747472.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
gi|282325081|gb|EFB55391.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus WBG10049]
gi|312437781|gb|ADQ76852.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
Length = 187
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 98/191 (51%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H+ + VVDATCGNG DTL + A++ G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHITPES-IVVDATCGNGNDTLFL----AEQVPVGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL++T DK LVK H +E + + + A FNLGYLP GDKS+
Sbjct: 56 ALENTR---DKVKDFNHVSLVK---DGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A+ A ++ G+I +V+Y GH G+ E +A+ + +L K+Q
Sbjct: 110 VTKPDTTIQAINALLSLMSTEGIIVLVIYHGHSEGQLEKQALLDYLSTLEQKHAQVLKYQ 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|210622939|ref|ZP_03293444.1| hypothetical protein CLOHIR_01392 [Clostridium hiranonis DSM 13275]
gi|210153905|gb|EEA84911.1| hypothetical protein CLOHIR_01392 [Clostridium hiranonis DSM 13275]
Length = 193
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
K V+ +GD +DAT GNGYDT+ + ++V + G VY D+Q EA+KST +K K
Sbjct: 19 KEVIGEGDVCIDATMGNGYDTVFLAEIVGEN---GKVYAFDVQEEAIKST----EKKVKK 71
Query: 149 AE-KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAER 207
E + V+L H + V S ++ FNLGYLP + +IT +TT A++ +
Sbjct: 72 LEFEDRVELILDGHENISNYVKDS--IKCAVFNLGYLPRCEHRIITKPDTTIEAIKQSVA 129
Query: 208 ILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+L G++ + +Y GH GG EE AV +A +L ++ + + +N+ P + L ++
Sbjct: 130 LLEENGVVCVSIYTGHEGGMEERNAVFDYAANLEQKEYNVFESKFINQKNNPPSIILIEK 189
>gi|418078153|ref|ZP_12715376.1| rRNA methylase [Streptococcus pneumoniae 4027-06]
gi|353747344|gb|EHD28000.1| rRNA methylase [Streptococcus pneumoniae 4027-06]
Length = 163
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 92/171 (53%), Gaps = 17/171 (9%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV--KL 156
+DAT GNG+DTL + K+ A VY DIQ +AL+ T L + GL +L
Sbjct: 1 MDATMGNGHDTLFLAKL------AKQVYAFDIQKQALEKTQERLHQA------GLTNAQL 48
Query: 157 FNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216
H +++ V K+ A FNLGYLP DKSVIT +TT ALE +L+ GG I+
Sbjct: 49 ILQGHETLDQFVTKAKAG---IFNLGYLPSADKSVITRPQTTIEALEKLCGLLVKGGRIA 105
Query: 217 MVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+++Y GH GG E +AV F L+ ++ ++ LN+ P + + ++
Sbjct: 106 IMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPFLVMIEK 156
>gi|376261338|ref|YP_005148058.1| putative S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Clostridium sp. BNL1100]
gi|373945332|gb|AEY66253.1| putative S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Clostridium sp. BNL1100]
Length = 188
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 8/169 (4%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
VV GDTV+D T GNG+DT + ++V + G VY DIQ AL +T + L+ +
Sbjct: 18 VVCNGDTVIDGTAGNGHDTAFLARLVG---AGGQVYSFDIQESALDTTKNRLESENLLSR 74
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V L + H M + V K ++ FNLGYLPGGD ++ T TT A+++A +++
Sbjct: 75 ---VNLIHDGHQNMMKYVNK--PIKAAMFNLGYLPGGDHNIGTRGGTTIEAIKSAMELVV 129
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
P G+IS+VVY G G +E V + +++ + + + +N+ P
Sbjct: 130 PHGIISIVVYYGGDSGFDEKNEVINYIKTIDCKKFSVMQTEFVNQINCP 178
>gi|121534492|ref|ZP_01666315.1| putative rRNA methylase [Thermosinus carboxydivorans Nor1]
gi|121306985|gb|EAX47904.1| putative rRNA methylase [Thermosinus carboxydivorans Nor1]
Length = 188
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 8/176 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ VVDAT GNG DTL + + S ++ DIQ AL T +LL ++
Sbjct: 19 LKNAYNVVDATAGNGKDTLFL---AINTPSEAVIWAFDIQQTALNKTKALL---ADHGQE 72
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
VK H ++ V ++ V FNLGYLPGGD +V T +TT AL +L P
Sbjct: 73 RKVKFILASHDQIANYV--NSPVDAAMFNLGYLPGGDHTVTTMPDTTVAALNQLLVLLNP 130
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
G+IS+V Y GH GR E A+ +F +L + +QM+N+ P ++++ +R
Sbjct: 131 MGIISIVAYPGHDMGRREELALRSFLATLPQKLYTVACWQMINQVNNPPVLYIVER 186
>gi|49484008|ref|YP_041232.1| hypothetical protein SAR1846 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257425874|ref|ZP_05602298.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428541|ref|ZP_05604939.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431175|ref|ZP_05607552.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433856|ref|ZP_05610214.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257436773|ref|ZP_05612817.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|282904336|ref|ZP_06312224.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus C160]
gi|282906161|ref|ZP_06314016.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282909078|ref|ZP_06316896.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282914555|ref|ZP_06322341.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M899]
gi|282919523|ref|ZP_06327258.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus C427]
gi|282924901|ref|ZP_06332567.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus C101]
gi|283958514|ref|ZP_06375965.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293503633|ref|ZP_06667480.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510649|ref|ZP_06669354.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus M809]
gi|293537190|ref|ZP_06671870.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M1015]
gi|295428337|ref|ZP_06820966.1| mraW [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297590699|ref|ZP_06949337.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
gi|415682575|ref|ZP_11447891.1| hypothetical protein CGSSa00_08420 [Staphylococcus aureus subsp.
aureus CGS00]
gi|417887645|ref|ZP_12531768.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21195]
gi|418564764|ref|ZP_13129185.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21264]
gi|418582699|ref|ZP_13146775.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418595298|ref|ZP_13158916.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21342]
gi|418601934|ref|ZP_13165348.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21345]
gi|418892504|ref|ZP_13446616.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418898405|ref|ZP_13452474.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418901276|ref|ZP_13455331.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909628|ref|ZP_13463622.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG149]
gi|418917673|ref|ZP_13471631.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418923458|ref|ZP_13477373.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982781|ref|ZP_13530488.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418986446|ref|ZP_13534129.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1500]
gi|49242137|emb|CAG40837.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271568|gb|EEV03714.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275382|gb|EEV06869.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278123|gb|EEV08771.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281949|gb|EEV12086.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257284124|gb|EEV14247.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|282313267|gb|EFB43663.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus C101]
gi|282317333|gb|EFB47707.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus C427]
gi|282321736|gb|EFB52061.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M899]
gi|282327342|gb|EFB57637.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282331453|gb|EFB60967.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282595954|gb|EFC00918.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus C160]
gi|283790663|gb|EFC29480.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290920035|gb|EFD97103.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M1015]
gi|291095299|gb|EFE25564.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466540|gb|EFF09061.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus M809]
gi|295127737|gb|EFG57374.1| mraW [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297575585|gb|EFH94301.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
gi|315195675|gb|EFU26062.1| hypothetical protein CGSSa00_08420 [Staphylococcus aureus subsp.
aureus CGS00]
gi|341857285|gb|EGS98100.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21195]
gi|371975901|gb|EHO93193.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21264]
gi|374396968|gb|EHQ68186.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21345]
gi|374401825|gb|EHQ72877.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21342]
gi|377701945|gb|EHT26271.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377703550|gb|EHT27864.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377703826|gb|EHT28138.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377709442|gb|EHT33695.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377729980|gb|EHT54057.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377734182|gb|EHT58221.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377749738|gb|EHT73682.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377751437|gb|EHT75367.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG149]
gi|377759862|gb|EHT83742.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 187
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 98/191 (51%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H+ + VVDATCGNG DTL + A++ G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHITPES-IVVDATCGNGNDTLFL----AEQVPEGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL++T DK LVK H +E + + + A FNLGYLP GDKS+
Sbjct: 56 ALENTR---DKVKDFNHVSLVK---DGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A+ A ++ G+I +V+Y GH G+ E +A+ + +L K+Q
Sbjct: 110 VTKPDTTIQAINALLSLMSTEGIIVLVIYHGHSEGQLEKQALLDYLSTLEQKHAQVLKYQ 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|153812378|ref|ZP_01965046.1| hypothetical protein RUMOBE_02777 [Ruminococcus obeum ATCC 29174]
gi|149831540|gb|EDM86627.1| putative rRNA methylase [Ruminococcus obeum ATCC 29174]
Length = 187
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 93/179 (51%), Gaps = 7/179 (3%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ GD +DAT GNG DTL++ + + G V+ DIQ EAL +T L +
Sbjct: 15 REQVQPGDICIDATMGNGNDTLLLSSLCGKD---GHVFAFDIQEEALINTRKRL--MEAD 69
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A + L H+ +E V T V + FNLGYLPGGD + T ++T+ AL + +
Sbjct: 70 APQNYTLLLE-SHTNIEHYVDPGT-VSCITFNLGYLPGGDHTKATHADTSIAALSKSLDL 127
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GGLIS+ +Y G G EE AV A+ + L+ ++ + NRP P + L R
Sbjct: 128 LQKGGLISLCIYSGGDSGFEERNAVLAWLKELNPHKYLVIRSDYYNRPNNPPIPVLIIR 186
>gi|121634545|ref|YP_974790.1| hypothetical protein NMC0701 [Neisseria meningitidis FAM18]
gi|385328085|ref|YP_005882388.1| hypothetical protein NMBB_0845 [Neisseria meningitidis alpha710]
gi|433494328|ref|ZP_20451398.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM762]
gi|433496512|ref|ZP_20453553.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
M7089]
gi|433498572|ref|ZP_20455581.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
M7124]
gi|433500540|ref|ZP_20457526.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM174]
gi|120866251|emb|CAM09992.1| hypothetical protein NMC0701 [Neisseria meningitidis FAM18]
gi|308388937|gb|ADO31257.1| hypothetical protein NMBB_0845 [Neisseria meningitidis alpha710]
gi|432231002|gb|ELK86672.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM762]
gi|432234406|gb|ELK90026.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
M7124]
gi|432235212|gb|ELK90828.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
M7089]
gi|432235831|gb|ELK91440.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM174]
Length = 188
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 9/179 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ + +G +D T GNG+DTL + + G V+ DIQ +AL +T L +
Sbjct: 15 RKALPEGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALNNTRCRL----QE 67
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A V+ H +++ +PK + FN G+LPGGDKS+ T +ET+ AL A +
Sbjct: 68 AGYSNVRFILDGHENLKQYIPKPLDAAI--FNFGWLPGGDKSLTTRTETSIAALSATLSL 125
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L G++ V+Y GH G++E EAV +A++L + + ++ NR +P + F++
Sbjct: 126 LKENGMLIAVLYPGHENGKQEAEAVGQWAKNLPQEQFAVLRYGFTNRKNSPPYLLAFEK 184
>gi|259046845|ref|ZP_05737246.1| rRNA methylase [Granulicatella adiacens ATCC 49175]
gi|259036468|gb|EEW37723.1| rRNA methylase [Granulicatella adiacens ATCC 49175]
Length = 189
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
+DAT GNG+DTL + + + S + DIQ A+ T LL K + V
Sbjct: 26 IDATAGNGHDTLFLAQHI---DSTSKILSFDIQETAILQTRQLLQKHDLAPK---VTCIL 79
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H+ + + + VRL FNLGYLPG DK +IT +T A++ L G I +V
Sbjct: 80 DSHANISNYLEQDERVRLAIFNLGYLPGSDKKIITIPSSTLEAIQILLERLEKYGKIIIV 139
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
Y GH GG EE +AVE +LS +W K+Q +N+ P + ++ ++
Sbjct: 140 SYYGHDGGIEEKDAVEELISALSQKEWSVLKYQFINQINCPPICYVIEK 188
>gi|288553841|ref|YP_003425776.1| SAM-dependent methyltransferase MraW family [Bacillus pseudofirmus
OF4]
gi|288545001|gb|ADC48884.1| SAM-dependent methyltransferase MraW family [Bacillus pseudofirmus
OF4]
Length = 190
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 8/175 (4%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
GD VD T GNG+DTL + +V + G VY +DIQ A+ +T K V
Sbjct: 21 GDIAVDCTAGNGHDTLFLANLVGN---TGHVYSVDIQETAITNTKL---KVGEAEVANRV 74
Query: 155 KLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212
L H + ++PK R+ FNLGYLPGGDKS++T S+TT A+++ ++ G
Sbjct: 75 TLHQSGHEHISTLIPKEEYGRVKGAIFNLGYLPGGDKSIVTQSQTTIKAIDSLLELMPKG 134
Query: 213 GLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
G+I +V+Y GH G E + + + L + +N+ P + ++
Sbjct: 135 GMIVLVIYHGHAEGAAERDHLREYVTRLDQKKAHVLNYSFINQANNPPFIVAIEK 189
>gi|331087032|ref|ZP_08336107.1| hypothetical protein HMPREF0987_02410 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409482|gb|EGG88925.1| hypothetical protein HMPREF0987_02410 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 187
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 93/176 (52%), Gaps = 8/176 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V +GD +DAT GNG+DTL++ ++V ++G V DIQ +A++ T +D AE+
Sbjct: 18 VLEGDICIDATAGNGHDTLLLAELVG---ASGSVIAFDIQEQAVQETKRKID-ACGYAER 73
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V L + H K V + FN GYLPGGD ++ T ++T+ A+E R+L
Sbjct: 74 TEVVLDSHVHMGA---YAKENTVSCITFNFGYLPGGDHTLATKADTSVQAIEEGLRLLKK 130
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFLFK 266
GL+S+ Y G G EE E + A+ + L ++ + NRP PV F+ K
Sbjct: 131 DGLMSLCTYSGGDSGFEEKERILAYLKELDPKKYLVIVSEYYNRPNHPPVPAFVIK 186
>gi|425737028|ref|ZP_18855303.1| hypothetical protein C273_01490 [Staphylococcus massiliensis S46]
gi|425483121|gb|EKU50274.1| hypothetical protein C273_01490 [Staphylococcus massiliensis S46]
Length = 186
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 11/172 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ + V+DATCGNG DT + + V + G VYG D+Q A+KST + +
Sbjct: 18 ISEDSIVIDATCGNGLDTHFLAQQVPE----GHVYGFDVQEVAIKSTQVKVSSFEN---- 69
Query: 152 GLVKLFNMCHSRMEEIVPKST-AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V LF H ++ +P + FNLGYLP GDKS+ T S +T A++ IL
Sbjct: 70 --VTLFQESHEHVKSCIPHHDHQINAAIFNLGYLPKGDKSITTKSHSTIEAIKNIFDILT 127
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
G+I +V+Y GH G+ E + V + SL D K+ +N+ P V
Sbjct: 128 VEGIIVIVIYPGHDEGKIEKDDVLQYLESLPQDKAHVLKYAFINQKNNPPFV 179
>gi|242243021|ref|ZP_04797466.1| rRNA methyltransferase [Staphylococcus epidermidis W23144]
gi|420174491|ref|ZP_14680941.1| hypothetical protein HMPREF9990_02109 [Staphylococcus epidermidis
NIHLM061]
gi|420192682|ref|ZP_14698540.1| hypothetical protein HMPREF9983_06254 [Staphylococcus epidermidis
NIHLM023]
gi|242233479|gb|EES35791.1| rRNA methyltransferase [Staphylococcus epidermidis W23144]
gi|394244996|gb|EJD90323.1| hypothetical protein HMPREF9990_02109 [Staphylococcus epidermidis
NIHLM061]
gi|394260855|gb|EJE05659.1| hypothetical protein HMPREF9983_06254 [Staphylococcus epidermidis
NIHLM023]
Length = 187
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ V+DATCGNG DT + V + G VYG DIQ +A+ +T + ++
Sbjct: 18 INHNSIVIDATCGNGNDTAYFAQHVPN----GFVYGFDIQEQAILNTHKKIKDYSN---- 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + +P + A FNLGYLP G+K ++T ETT MA+ IL
Sbjct: 70 --VKLIQSGHENAKLHIPAQYHGHIDAAIFNLGYLPKGNKEIVTKPETTIMAINEIFDIL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
G+I +V+Y GH G+ E EA+ F ++ + ++Q +N + AP + + KR
Sbjct: 128 SIEGIIILVIYHGHEEGKVEKEALLEFLQNFDQNKAHILQYQFINQKNNAPFIYAIEKR 186
>gi|385853561|ref|YP_005900075.1| putative rRNA methylase [Neisseria meningitidis H44/76]
gi|427828464|ref|ZP_18995480.1| rRNA methylase family protein [Neisseria meningitidis H44/76]
gi|254674314|emb|CBA10098.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
gi|316983733|gb|EFV62714.1| rRNA methylase family protein [Neisseria meningitidis H44/76]
gi|325200565|gb|ADY96020.1| putative rRNA methylase [Neisseria meningitidis H44/76]
Length = 188
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 93/174 (53%), Gaps = 9/174 (5%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
+G +D T GNG+DTL + + G V+ DIQ +AL T L + +
Sbjct: 20 EGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALSRTRCRLKEARYEN---- 72
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
V+L H +++ V S + FN G+LPGGDKS+ T +ET+ AL A +L GG
Sbjct: 73 VQLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTHTETSIPALCATLSLLKEGG 130
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
++ V+Y GH G++E EA+E +A++L + + ++ NR +P + F++
Sbjct: 131 MLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLRYGFTNRKNSPPYLLAFEK 184
>gi|385854895|ref|YP_005901408.1| putative rRNA methylase [Neisseria meningitidis M01-240355]
gi|325203836|gb|ADY99289.1| putative rRNA methylase [Neisseria meningitidis M01-240355]
Length = 188
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 9/179 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ + +G +D T GNG+DTL + + G V+ DIQ +AL +T L +
Sbjct: 15 RKALPEGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALNNTRCRL----QE 67
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A V+L H +++ V S + FN G+LPGGDKS+ T +ET+ +L A +
Sbjct: 68 AGYSNVRLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTHTETSIPSLCATLSL 125
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG++ V+Y GH G++E EA+E +A++L + + ++ NR +P + F++
Sbjct: 126 LKEGGMLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLRYGFTNRKNSPPYLLAFEK 184
>gi|422875830|ref|ZP_16922300.1| rRNA methylase [Streptococcus sanguinis SK1056]
gi|332362266|gb|EGJ40066.1| rRNA methylase [Streptococcus sanguinis SK1056]
Length = 183
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 96/189 (50%), Gaps = 23/189 (12%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + ++ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDVVVDATMGNGHDTLFLAQL------AKQVYAFDIQEQAVEKTRQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
E GL V+L H +++ A FNLGYLP DKSVIT +TT
Sbjct: 61 -----TEAGLDNVQLILAGHETLDQYTEHFKAA---IFNLGYLPSADKSVITRPDTT--- 109
Query: 202 LEAAERI---LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
LEA E++ L GG ++++Y GH GG E +AV F L D+ ++ +N+
Sbjct: 110 LEALEKVCWGLEKGGRAAIMIYYGHEGGEVEKDAVLDFVSQLPQQDFTVALYKTINQINN 169
Query: 259 PVLVFLFKR 267
P + + ++
Sbjct: 170 PPFLVMIEK 178
>gi|350567121|ref|ZP_08935723.1| rRNA methyltransferase [Peptoniphilus indolicus ATCC 29427]
gi|348659706|gb|EGY76439.1| rRNA methyltransferase [Peptoniphilus indolicus ATCC 29427]
Length = 186
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 96/181 (53%), Gaps = 9/181 (4%)
Query: 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142
+ + K + G +DATCG G D+L K++ + S G +Y DIQ EA+ ST +LL
Sbjct: 10 VVDDILKEINLDGKFALDATCGRGNDSL---KLIQNLGSNGFLYACDIQEEAINSTENLL 66
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL 202
SK + +L+ + H + E + + + + +NLGYLP DKS+ T +E+T ++L
Sbjct: 67 ---CSKGYQNY-RLYKISHEYVFERIEEK--LDFIIYNLGYLPKSDKSIFTKAESTIISL 120
Query: 203 EAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
A + G+I +V Y+GH G EE E + F ++L + K + N+ P +V
Sbjct: 121 REAINKISKEGIIVVVSYLGHQGSTEEREKLSKFLKNLDQKKYKVEKIEFFNQVNNPPIV 180
Query: 263 F 263
+
Sbjct: 181 Y 181
>gi|310828099|ref|YP_003960456.1| SAM-dependent methyltransferase [Eubacterium limosum KIST612]
gi|308739833|gb|ADO37493.1| SAM-dependent methyltransferase [Eubacterium limosum KIST612]
Length = 208
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 102/189 (53%), Gaps = 10/189 (5%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
+T+ A + +R GD+ VDAT G G DT ++ + V + G VY D+Q EALK T
Sbjct: 26 VTLLAGALMAEHLRVGDSAVDATAGTGADTCLLARSVG---ACGKVYSFDVQKEALKETE 82
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSRMEEI--VPKSTAVRLVAFNLGYLPGGDKSVITTSET 197
L +++ + V LF+ H M I + + + + + FNLGYLP GDK ++T ++T
Sbjct: 83 QRL---SAEGLRDRVLLFHKGHETMGSIPELRQDSKIMGIMFNLGYLPHGDKEIVTKTDT 139
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
T ALE++ +L P GL+++ +Y H G EE AVE + L + K + +N+
Sbjct: 140 TLAALESSVTLLAPKGLMTLCLYR-HLAGLEESMAVEKWCAQLGA-GFNVHKLETINKNN 197
Query: 258 APVLVFLFK 266
P L+ K
Sbjct: 198 PPYLILAEK 206
>gi|121998449|ref|YP_001003236.1| putative rRNA methylase [Halorhodospira halophila SL1]
gi|121589854|gb|ABM62434.1| putative rRNA methylase [Halorhodospira halophila SL1]
Length = 201
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 22/189 (11%)
Query: 89 KHVVR---KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT 145
+HV R + +DAT GNG+D + + G V +D+Q AL +T + L+
Sbjct: 11 RHVARVLGRNGRAIDATAGNGHDARFLAEQT---GPGGSVLVVDLQWGALHNTRTRLEAA 67
Query: 146 TSKAEKGLVKLFNMCHSRMEEIVPKS--TAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ LV+ H + + P +V V FNLGYLPGGD++V T E T+ AL+
Sbjct: 68 GNLTPCYLVQ---ANHRHLATLTPADWHGSVDTVTFNLGYLPGGDRAVTTQPEHTEAALD 124
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSV-----DDWICCKFQMLNRPLA 258
AA R+L PGGL+S+V Y GHPGG E V AR +++ D W + + A
Sbjct: 125 AARRLLRPGGLLSVVAYRGHPGGAAEARCV---ARWMTMAANAGDHW---QERAAGPDTA 178
Query: 259 PVLVFLFKR 267
P+L L+++
Sbjct: 179 PILHLLWRQ 187
>gi|315924793|ref|ZP_07921010.1| rRNA methylase [Pseudoramibacter alactolyticus ATCC 23263]
gi|315621692|gb|EFV01656.1| rRNA methylase [Pseudoramibacter alactolyticus ATCC 23263]
Length = 190
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 90/176 (51%), Gaps = 12/176 (6%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
GD+ +DAT G G D + + V + G VYG DIQ AL + DK + G V
Sbjct: 23 GDSALDATVGTGEDACFLAEAV---GATGRVYGFDIQKAAL---TMARDKLAERQWAGPV 76
Query: 155 KLFNMCHSRM---EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
++ H + EIV S +R FNLGY PGGD +V+T ETT AL AA ++L
Sbjct: 77 HWYHQGHETLGTVPEIVQDSR-IRAAMFNLGYFPGGDSAVVTRRETTLTALNAAAKVLAG 135
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG++++ Y H GR E E V + R+L + +F + N APV + K+
Sbjct: 136 GGILTICAYA-HASGRAEAEGVARWVRALD-HRFEAYRFSVENHQGAPVAYVIRKK 189
>gi|254446375|ref|ZP_05059851.1| Putative rRNA methylase family [Verrucomicrobiae bacterium DG1235]
gi|198260683|gb|EDY84991.1| Putative rRNA methylase family [Verrucomicrobiae bacterium DG1235]
Length = 590
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 23/170 (13%)
Query: 82 IAANGVWKHVVRK---GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST 138
IA N V V++ G +DAT GNG+DT + + V +G V+ DIQ +AL T
Sbjct: 387 IATNLVKDTVLKNLTPGSIAIDATAGNGHDTQWLAQAVG---PSGHVFAYDIQEQALAVT 443
Query: 139 ------SSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP--KSTAVRLVAFNLGYLPGGDKS 190
SLLD+TT L + H + + +P + + FNLG+LPGGD
Sbjct: 444 RQRLQKQSLLDQTT---------LLHTGHETLLQTIPLKHHGQISAIVFNLGFLPGGDSE 494
Query: 191 VITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSL 240
VIT TT AL A+ ++L P G++++ +Y HPG ++E++ V A+ +L
Sbjct: 495 VITLPNTTLTALNASLQLLKPNGILAVTLYPSHPGAQQEVDQVLAWLHAL 544
>gi|431794328|ref|YP_007221233.1| Putative rRNA methylase [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430784554|gb|AGA69837.1| Putative rRNA methylase [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 193
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 97/177 (54%), Gaps = 9/177 (5%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
+++ GD V+D T G G DTL + ++V ++ G V+ DIQ AL+ T LL + +
Sbjct: 19 MIQAGDVVLDLTAGRGRDTLFLAELVGEK---GFVHAFDIQEIALQETQRLLSEYQLEDR 75
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V+L + HSR+ E V + V+ FNLGYLPG ++ V T + +T AL A ++L
Sbjct: 76 ---VRLHHCDHSRLLEKVQEP--VQAAMFNLGYLPGHNQDVTTHATSTISALTAVFQLLR 130
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFK 266
G+I++ +Y GHPGG E AVE F L + + + N+ P AP + + K
Sbjct: 131 KDGVIALTLYRGHPGGLAEAVAVEDFLSDLPRRQYSVLRGEYTNQIPNAPYWILVQK 187
>gi|317496230|ref|ZP_07954590.1| SAM-dependent methyltransferase [Gemella morbillorum M424]
gi|316913805|gb|EFV35291.1| SAM-dependent methyltransferase [Gemella morbillorum M424]
Length = 185
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 97/182 (53%), Gaps = 11/182 (6%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K V+ K VVDATCGNG DTL + +S+A VY DIQ +A+ ST LL +T
Sbjct: 11 ILKEVIDKNSIVVDATCGNGNDTLFLA-----QSAAKKVYAFDIQQQAIDSTLKLL-QTN 64
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
+ EK V L HS + + S ++ V FNLGYLP D ++ T ++TT +A++
Sbjct: 65 NCLEKCEVIL--DSHSNFDNYI--SEPIKAVVFNLGYLPNADHTITTLADTTLLAIDKFL 120
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLF 265
L G I +VVY GH G+ E EA+ L + +Q +N + AP ++ L
Sbjct: 121 TNLEINGRIVIVVYWGHENGKVEKEALLNHLTKLDQKEVEVLSYQFINQKNNAPFVLALE 180
Query: 266 KR 267
K+
Sbjct: 181 KK 182
>gi|333375457|ref|ZP_08467265.1| rRNA methyltransferase [Kingella kingae ATCC 23330]
gi|332970306|gb|EGK09298.1| rRNA methyltransferase [Kingella kingae ATCC 23330]
Length = 187
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 101/186 (54%), Gaps = 18/186 (9%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ + +R GDTV+D T GNGYDT + + V + +G V DIQ A+++T + L
Sbjct: 13 LLRQHIRVGDTVMDGTAGNGYDTAFLAQCVGE---SGRVVAFDIQRAAIEATQNRL---- 65
Query: 147 SKAEKGL---VKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ GL V+L H + + P S AV FN GYLP GDKS+ T ++T+ A
Sbjct: 66 --LQLGLTDRVQLIQDGHQHAAQYISQPLSAAV----FNFGYLPRGDKSITTQAQTSVAA 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
++AA L G++ V+Y GH G+ E++A+ +A SL + + +++ +N+ P +
Sbjct: 120 VQAALDALQAQGIVCAVLYSGHAAGKPEMQALLDYASSLPHNRFRVLRYEFINKQNCPPI 179
Query: 262 VFLFKR 267
+ ++
Sbjct: 180 LLAIEK 185
>gi|404378095|ref|ZP_10983194.1| hypothetical protein HMPREF9021_00037 [Simonsiella muelleri ATCC
29453]
gi|294483959|gb|EFG31642.1| hypothetical protein HMPREF9021_00037 [Simonsiella muelleri ATCC
29453]
Length = 190
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 8/168 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ GD VD T GNG DTL + ++V + G VY DIQ+ AL +T L +
Sbjct: 18 LKTGDIAVDGTMGNGNDTLFLAQLVGE---TGKVYAFDIQAAALLATERRLREADVLTR- 73
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V L + H + + VP++ A FN GYLP G+ ++ T ET+ A+++A +L
Sbjct: 74 --VSLIQVGHENLAQYVPQNVAA--AVFNFGYLPRGNHAITTLPETSLQAIQSALNLLKI 129
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
GL+ +VVY GH G+ E A+ F L + + +++ +N+ P
Sbjct: 130 NGLLVLVVYHGHEMGKLESHAINHFVEQLPQNAFRVLRYEFVNQANCP 177
>gi|422758351|ref|ZP_16812113.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322411186|gb|EFY02094.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 184
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 94/179 (52%), Gaps = 16/179 (8%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+ K VVDAT GNG DT + + SA VY D+Q +A++ TS L A+
Sbjct: 16 VMDKSSVVVDATMGNGNDTAFLAQ------SAKKVYAFDVQEQAIRKTSERL------AQ 63
Query: 151 KGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
GL +L H ++E V + VR FNLGYLP DKSVIT +TT +AL ++
Sbjct: 64 LGLSNAELILAGHEAVDEYV--TEPVRAAIFNLGYLPSADKSVITLPDTTLLALSKILKL 121
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG ++++VY GH GG E +A+ F R L +Q LN+ P + + ++
Sbjct: 122 LEVGGRVAIMVYYGHEGGDMEKDALLDFVRQLDQRLVSAMLYQPLNQVNTPPFLVMLEK 180
>gi|381400994|ref|ZP_09925912.1| hypothetical protein KKB_03877 [Kingella kingae PYKK081]
gi|380833919|gb|EIC13769.1| hypothetical protein KKB_03877 [Kingella kingae PYKK081]
Length = 187
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 101/186 (54%), Gaps = 18/186 (9%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ + +R GDTV+D T GNGYDT + + V + +G V DIQ A+++T + L
Sbjct: 13 LLRQHIRVGDTVMDGTAGNGYDTAFLAQCVGE---SGRVVAFDIQRAAIEATQNRL---- 65
Query: 147 SKAEKGL---VKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ GL V+L H + + P S AV FN GYLP GDKS+ T ++T+ A
Sbjct: 66 --LQLGLTDRVQLIQDGHQHAAQYISQPLSAAV----FNFGYLPRGDKSITTQAQTSVAA 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
++AA L G++ V+Y GH G+ E++A+ +A SL + + +++ +N+ P +
Sbjct: 120 VQAALDALQAQGIVCAVLYSGHAAGKPEMQALLDYASSLPHNRFRVLRYEFINKQNCPPI 179
Query: 262 VFLFKR 267
+ ++
Sbjct: 180 LLAIEK 185
>gi|228475902|ref|ZP_04060612.1| SAM-dependent methyltransferase, MraW methylase family
[Staphylococcus hominis SK119]
gi|228270057|gb|EEK11527.1| SAM-dependent methyltransferase, MraW methylase family
[Staphylococcus hominis SK119]
Length = 186
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 21/197 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TLI K ++ V+DATCGNG DTL + A++ G V+G DIQ E
Sbjct: 8 PFAKTLI--------KQHIQHDSIVIDATCGNGNDTLFL----AEQVPNGKVFGFDIQKE 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSV 191
A++ T + A V L + H + +P V FNLGYLP GDK++
Sbjct: 56 AIEHTKEKI------ASFKHVTLIHDGHENILNDIPSDVIGNVDAAIFNLGYLPKGDKTI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T ETT A+E+ ++L G+I +V+Y GH G+ E + + + + K+Q
Sbjct: 110 VTKPETTIQAIESIFKLLSTEGIIVLVIYHGHKEGQIERDELLKYLENFDQSKAHILKYQ 169
Query: 252 MLNR-PLAPVLVFLFKR 267
+N+ AP + + KR
Sbjct: 170 FINQVNHAPFICAIEKR 186
>gi|70726161|ref|YP_253075.1| hypothetical protein SH1160 [Staphylococcus haemolyticus JCSC1435]
gi|68446885|dbj|BAE04469.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 186
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 21/197 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI K +++ V+DATCGNG DTL + A + S G V+G DIQ
Sbjct: 8 PFSKTLI--------KEHIKQDSIVIDATCGNGNDTLFL----AQQVSNGHVFGFDIQDT 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
A++ST + + V L H +++ + ++ A FNLGYLP GDKS+
Sbjct: 56 AIQSTFEKVKAFNN------VTLIQDGHENIKKHIDIQFKGQIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T ETT A+ A L G+I +V+Y GH G+ E +A+ F + K+Q
Sbjct: 110 VTRPETTIKAINAIFDYLSVEGIIVLVIYHGHAEGQVERDALLDFLEHFDQEKAHILKYQ 169
Query: 252 MLNR-PLAPVLVFLFKR 267
+N+ AP + + KR
Sbjct: 170 FMNQVNHAPFICAIEKR 186
>gi|403386475|ref|ZP_10928532.1| hypothetical protein CJC12_01187 [Clostridium sp. JC122]
Length = 180
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 101/189 (53%), Gaps = 17/189 (8%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
+++ + + K+ + +D T GNGYDT + K + VY DIQ A+ +
Sbjct: 8 VSMLSQHIVKNFTENKNVAIDGTLGNGYDTDFLSK------NFNKVYSFDIQKIAVDNYK 61
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTK 199
K V+L N HS++E+ + ++ V + +NLG+LPGGDKS+ T E+T
Sbjct: 62 --------KRNNNKVELINDSHSKLEKYIKEN--VDAIMYNLGFLPGGDKSITTMVESTI 111
Query: 200 MALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLA 258
++E+ +L GG++S+ +YVGH G++E A+ + ++L + ++LNR A
Sbjct: 112 KSIESGLELLNSGGIVSIAIYVGHDEGKKEEMAIMKYVKNLDKKLYGVMLHEVLNRSESA 171
Query: 259 PVLVFLFKR 267
P L+ + K+
Sbjct: 172 PKLLIIEKK 180
>gi|28210208|ref|NP_781152.1| rRNA methylase [Clostridium tetani E88]
gi|28202644|gb|AAO35089.1| putative rRNA methylase [Clostridium tetani E88]
Length = 192
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
V K+ ++KGD VDAT GNG DTL + K+V +E G VY DIQ EALKST L +
Sbjct: 19 VCKNKLKKGDIAVDATMGNGNDTLFLCKLVEEE---GKVYSFDIQMEALKSTEKKLYQNN 75
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
+L H M++ + + +++ FNLGYLPG K V T +TT A++ +
Sbjct: 76 IH----WAELILDGHENMDKYLKEEP--KIILFNLGYLPGNSKEVTTKKDTTLEAVKKSL 129
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
++ G+I +V+Y GH G E +A+ F + + + K Q +N+ P
Sbjct: 130 DLIKKEGVIILVIYPGHEEGMLEKKALIDFCKGICQKQFNVIKLQFVNQINNP 182
>gi|385851585|ref|YP_005898100.1| putative rRNA methylase [Neisseria meningitidis M04-240196]
gi|416213960|ref|ZP_11622653.1| putative rRNA methylase [Neisseria meningitidis M01-240013]
gi|418287972|ref|ZP_12900498.1| putative rRNA methylase [Neisseria meningitidis NM233]
gi|418290230|ref|ZP_12902400.1| putative rRNA methylase [Neisseria meningitidis NM220]
gi|421542157|ref|ZP_15988267.1| putative rRNA methyltransferase [Neisseria meningitidis NM255]
gi|421544122|ref|ZP_15990200.1| putative rRNA methyltransferase [Neisseria meningitidis NM140]
gi|421546232|ref|ZP_15992281.1| putative rRNA methyltransferase [Neisseria meningitidis NM183]
gi|421548501|ref|ZP_15994526.1| putative rRNA methyltransferase [Neisseria meningitidis NM2781]
gi|421552526|ref|ZP_15998500.1| putative rRNA methyltransferase [Neisseria meningitidis NM576]
gi|421556974|ref|ZP_16002883.1| putative rRNA methyltransferase [Neisseria meningitidis 80179]
gi|421560925|ref|ZP_16006778.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM2657]
gi|421565079|ref|ZP_16010865.1| putative rRNA methyltransferase [Neisseria meningitidis NM3081]
gi|421567194|ref|ZP_16012930.1| putative rRNA methyltransferase [Neisseria meningitidis NM3001]
gi|433464731|ref|ZP_20422216.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM422]
gi|433490099|ref|ZP_20447229.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM418]
gi|254669738|emb|CBA03926.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|325144213|gb|EGC66520.1| putative rRNA methylase [Neisseria meningitidis M01-240013]
gi|325206408|gb|ADZ01861.1| putative rRNA methylase [Neisseria meningitidis M04-240196]
gi|372201944|gb|EHP15813.1| putative rRNA methylase [Neisseria meningitidis NM220]
gi|372202809|gb|EHP16577.1| putative rRNA methylase [Neisseria meningitidis NM233]
gi|402318093|gb|EJU53618.1| putative rRNA methyltransferase [Neisseria meningitidis NM255]
gi|402323967|gb|EJU59405.1| putative rRNA methyltransferase [Neisseria meningitidis NM183]
gi|402324234|gb|EJU59670.1| putative rRNA methyltransferase [Neisseria meningitidis NM140]
gi|402326162|gb|EJU61567.1| putative rRNA methyltransferase [Neisseria meningitidis NM2781]
gi|402331158|gb|EJU66499.1| putative rRNA methyltransferase [Neisseria meningitidis NM576]
gi|402335659|gb|EJU70923.1| putative rRNA methyltransferase [Neisseria meningitidis 80179]
gi|402339405|gb|EJU74621.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM2657]
gi|402344205|gb|EJU79346.1| putative rRNA methyltransferase [Neisseria meningitidis NM3001]
gi|402345408|gb|EJU80525.1| putative rRNA methyltransferase [Neisseria meningitidis NM3081]
gi|432204218|gb|ELK60263.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM422]
gi|432228674|gb|ELK84372.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM418]
Length = 188
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 9/174 (5%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
+G +D T GNG+DTL + + G V+ DIQ +AL T L + +
Sbjct: 20 EGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALSRTRCRLKEARYEN---- 72
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
V+L H +++ V S + FN G+LPGGDKS+ T +ET+ AL A +L GG
Sbjct: 73 VQLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTHTETSIPALCATLSLLKEGG 130
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
++ V+Y GH G++E EA+E +A++L + + ++ NR P + F++
Sbjct: 131 MLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLRYGFTNRKNNPPYLLAFEK 184
>gi|313894507|ref|ZP_07828071.1| putative rRNA methylase [Veillonella sp. oral taxon 158 str. F0412]
gi|313440903|gb|EFR59331.1| putative rRNA methylase [Veillonella sp. oral taxon 158 str. F0412]
Length = 191
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 6/182 (3%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKT 145
+W ++K VVDATCGNG+D L + A + GC ++G+DIQ +A+ ++ LL KT
Sbjct: 14 IWDRSMKKAKVVVDATCGNGHDLLYL----AKRAQKGCHLFGIDIQMKAINTSKELL-KT 68
Query: 146 TSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA 205
A + + H K + L+ FNLGYLPG + VIT T A++
Sbjct: 69 NDIAPDVSLTFIHDSHDLALAHQLKDEVIDLMIFNLGYLPGSNHKVITKPHQTIDAIDKG 128
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
L G+I++V Y G P G +E++++ ++ L + C + +N+ P +F+
Sbjct: 129 LHKLSKSGVITIVAYPGTPDGMKEMQSLTSYLSDLEQKLYNVCHWHPMNQINNPPELFIL 188
Query: 266 KR 267
++
Sbjct: 189 QK 190
>gi|418619698|ref|ZP_13182511.1| MraW methylase-like family protein [Staphylococcus hominis VCU122]
gi|374823905|gb|EHR87895.1| MraW methylase-like family protein [Staphylococcus hominis VCU122]
Length = 186
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 98/197 (49%), Gaps = 21/197 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TLI K ++ V+DATCGNG DTL + A++ G V+G DIQ E
Sbjct: 8 PFAKTLI--------KQHIQDDSIVIDATCGNGNDTLFL----AEQVPNGKVFGFDIQKE 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSV 191
A++ T + A V L + H + +P V FNLGYLP GDK++
Sbjct: 56 AIEHTKEKI------ASFKHVTLIHDGHENILNDIPSDVIGNVDAAIFNLGYLPKGDKTI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T ETT A+E+ ++L G+I +V+Y GH G+ E + + + + K+Q
Sbjct: 110 VTKPETTIQAIESIFKLLSTEGIIVLVIYHGHKEGQIERDELLKYLENFDQSKAHILKYQ 169
Query: 252 MLNR-PLAPVLVFLFKR 267
+N+ AP + + KR
Sbjct: 170 FINQVNHAPFICAIEKR 186
>gi|294793728|ref|ZP_06758865.1| putative rRNA methylase [Veillonella sp. 3_1_44]
gi|294455298|gb|EFG23670.1| putative rRNA methylase [Veillonella sp. 3_1_44]
Length = 191
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 4/181 (2%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+W + VVDATCGNG+D L + K A +YG+DIQ +A+K++ LL
Sbjct: 14 IWDRCMENAKVVVDATCGNGHDLLYLSKRA---QKACHLYGIDIQMKAIKTSKELLQSND 70
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
E L + + H K + L+ FNLGYLPGGD V+T T A+
Sbjct: 71 IAPEVSLTFIHD-SHDLAVAHQLKDEVIDLMIFNLGYLPGGDHQVVTKPHQTIDAINEGL 129
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
L G+I++V Y G G EE+++++++ L+ + C + +N+ P +F+ +
Sbjct: 130 HKLSKSGVITIVAYPGTTEGFEEMQSLKSYLSDLNQKIYNVCHWHPMNQIHNPPELFILQ 189
Query: 267 R 267
+
Sbjct: 190 K 190
>gi|418613865|ref|ZP_13176861.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU118]
gi|418630993|ref|ZP_13193465.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU128]
gi|374822321|gb|EHR86348.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU118]
gi|374836303|gb|EHR99891.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU128]
Length = 187
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ V+DATCGNG DT + V + G VYG DIQ +A+ +T + ++
Sbjct: 18 INHNSIVIDATCGNGNDTAYFAQHVPN----GFVYGFDIQEQAILNTHKKIKDYSN---- 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + +P + A FNLGYLP G+K ++T ETT MA+ IL
Sbjct: 70 --VKLIQSGHENAKLHIPAQYHGHIDAAIFNLGYLPKGNKEIVTKPETTIMAINEIFDIL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
G+I +V+Y GH G+ E EA+ F ++ + ++Q +N + AP + + KR
Sbjct: 128 SIEGIIILVIYHGHEEGKVEKEALLEFLQNFDQNKAHILQYQFINQKNNAPFICAIEKR 186
>gi|422848086|ref|ZP_16894762.1| rRNA methylase [Streptococcus sanguinis SK115]
gi|422851077|ref|ZP_16897747.1| rRNA methylase [Streptococcus sanguinis SK150]
gi|325690968|gb|EGD32968.1| rRNA methylase [Streptococcus sanguinis SK115]
gi|325695068|gb|EGD36971.1| rRNA methylase [Streptococcus sanguinis SK150]
Length = 183
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 96/187 (51%), Gaps = 19/187 (10%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQAVEKTRQGL- 60
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
++A+ +L H +++ A FNLGYLP DKSVIT +TT LE
Sbjct: 61 ---AEADLDNAQLILAGHETLDQYTDHFKAA---IFNLGYLPSADKSVITRPDTT---LE 111
Query: 204 AAERI---LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
A E++ L GG ++++Y GH GG E +AV F L D+ ++ +N+ P
Sbjct: 112 ALEKVCWGLEKGGRAAIMIYYGHEGGEVEKDAVLDFVSQLPQQDFTVALYKTINQINNPP 171
Query: 261 LVFLFKR 267
+ + ++
Sbjct: 172 FLVMIEK 178
>gi|261378773|ref|ZP_05983346.1| putative rRNA methylase [Neisseria cinerea ATCC 14685]
gi|269144749|gb|EEZ71167.1| putative rRNA methylase [Neisseria cinerea ATCC 14685]
Length = 188
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 9/184 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + + + +G +D T GNG+DTL + + G V+ DIQ +AL T L
Sbjct: 10 AHYLLQQTLPEGGNALDGTAGNGHDTLFLAQTAG---ILGKVWAFDIQPQALTLTQCRLK 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + +L H +++ V S + FN G+LPGGDKS+ T +ET+ AL
Sbjct: 67 EAGYEN----AQLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTRTETSIPALC 120
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
A +L GG++ V+Y GH G++E EA+E +A+ L + + ++ +NR +P +
Sbjct: 121 ATLSLLKEGGMLITVLYPGHENGKQEAEAIEQWAKELPQEQFAVLRYGFINRKNSPPYLL 180
Query: 264 LFKR 267
F++
Sbjct: 181 AFEK 184
>gi|282917021|ref|ZP_06324779.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus D139]
gi|283770839|ref|ZP_06343731.1| mraW SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus H19]
gi|282319508|gb|EFB49860.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus D139]
gi|283460986|gb|EFC08076.1| mraW SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus H19]
Length = 187
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 98/191 (51%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H+ + VVDATCGNG DTL + A++ G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHITPES-IVVDATCGNGNDTLFL----AEQVPEGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL++T DK L+K H +E + + + A FNLGYLP GDKS+
Sbjct: 56 ALENTR---DKVKDFNHVSLIK---DGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A+ A ++ G+I +V+Y GH G+ E +A+ + +L ++Q
Sbjct: 110 VTKPDTTIQAINALLSLMSTEGIIVLVIYHGHSEGQLEKQALLDYLSTLDQKHAQVLQYQ 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|418635019|ref|ZP_13197407.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU129]
gi|420190354|ref|ZP_14696297.1| hypothetical protein HMPREF9984_06552 [Staphylococcus epidermidis
NIHLM037]
gi|420204657|ref|ZP_14710215.1| hypothetical protein HMPREF9978_05747 [Staphylococcus epidermidis
NIHLM015]
gi|374835777|gb|EHR99374.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU129]
gi|394258799|gb|EJE03673.1| hypothetical protein HMPREF9984_06552 [Staphylococcus epidermidis
NIHLM037]
gi|394273667|gb|EJE18098.1| hypothetical protein HMPREF9978_05747 [Staphylococcus epidermidis
NIHLM015]
Length = 187
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ V+DATCGNG DT + V + G VYG DIQ +A+ +T + ++
Sbjct: 18 INHNSIVIDATCGNGNDTAYFAQHVPN----GFVYGFDIQEQAILNTHKKIKDYSN---- 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + +P + A FNLGYLP G+K ++T ETT MA+ IL
Sbjct: 70 --VKLIQSGHENAKLHIPAQYHGHIDAAIFNLGYLPKGNKEIVTKPETTIMAINEIFDIL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
G+I +V+Y GH G+ E EA+ F ++ + ++Q +N + AP + + KR
Sbjct: 128 SIEGIIILVIYHGHEEGKIEKEALLEFLQNFDQNKAHILQYQFINQKNNAPFICAIEKR 186
>gi|210617941|ref|ZP_03291827.1| hypothetical protein CLONEX_04059 [Clostridium nexile DSM 1787]
gi|210149080|gb|EEA80089.1| hypothetical protein CLONEX_04059 [Clostridium nexile DSM 1787]
Length = 207
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 9/169 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS-LLDKTTSKAE 150
V++GD +DAT GNG DTL + ++V + G V DIQ EA+++T +L+ K
Sbjct: 21 VKEGDLCIDATAGNGNDTLFLCELVGE---CGRVLAFDIQKEAVENTKKRILEHQMEKR- 76
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
+F H++M++ + T V + FN GYLPGGD + T ++T+ A+ R+L
Sbjct: 77 ---ADVFLESHAKMQKYAKEET-VDCIVFNFGYLPGGDHQLATKADTSIEAIRQGLRLLK 132
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
GG++S+ +Y G G EE +A+ +F + L ++ NRP P
Sbjct: 133 VGGMMSLCIYSGGDSGFEERDAILSFLKCLDTKYYLVILSSYYNRPNHP 181
>gi|386729451|ref|YP_006195834.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus 71193]
gi|387603089|ref|YP_005734610.1| conserved protein YtqB [Staphylococcus aureus subsp. aureus ST398]
gi|404479116|ref|YP_006710546.1| hypothetical protein C248_1808 [Staphylococcus aureus 08BA02176]
gi|418309956|ref|ZP_12921506.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21331]
gi|418978474|ref|ZP_13526275.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus DR10]
gi|283471027|emb|CAQ50238.1| conserved protein YtqB [Staphylococcus aureus subsp. aureus ST398]
gi|365237413|gb|EHM78259.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21331]
gi|379994090|gb|EIA15535.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus DR10]
gi|384230744|gb|AFH69991.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
aureus 71193]
gi|404440605|gb|AFR73798.1| hypothetical protein C248_1808 [Staphylococcus aureus 08BA02176]
Length = 187
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 99/191 (51%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H+ + VVDATCGNG DTL + A++ G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHITPES-IVVDATCGNGNDTLFL----AEQVPEGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL++T DK + V L H +E + + + A FNLGYLP GDKS+
Sbjct: 56 ALENTR---DKV---KDFNYVSLIKDGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A++A ++ G+I +V+Y GH G+ E +A+ + +L ++Q
Sbjct: 110 VTKPDTTIQAIKALLSLMSTEGIIVLVIYHGHSEGQLEKQALLDYLSNLDQKHAQVLQYQ 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|225027670|ref|ZP_03716862.1| hypothetical protein EUBHAL_01929 [Eubacterium hallii DSM 3353]
gi|224954984|gb|EEG36193.1| putative rRNA methylase [Eubacterium hallii DSM 3353]
Length = 191
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 96/171 (56%), Gaps = 12/171 (7%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL--DKTTSKAEKGLVKL 156
+DAT G G DT+ + K+V ++ G V +DIQ A++ T L ++ + +AE L
Sbjct: 26 IDATAGTGKDTVFLAKLVGEK---GRVISMDIQEMAIEQTKKRLLKERLSDRAEVVLD-- 80
Query: 157 FNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216
H+ M++ K + V L+ FNLGYLPGGD S+ T ++TT ALE +L GG+IS
Sbjct: 81 ---SHAHMDKYAQKDS-VSLIMFNLGYLPGGDHSLSTKADTTIEALEKGLNLLHEGGMIS 136
Query: 217 MVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL-VFLFK 266
+++Y G G EE + V A+ R L+ D + N+P P L V++ K
Sbjct: 137 LLIYSGGDSGFEEKKQVLAWLRELTDDKYTVLVEAFYNKPNNPPLPVYILK 187
>gi|296313818|ref|ZP_06863759.1| putative rRNA methylase [Neisseria polysaccharea ATCC 43768]
gi|296839542|gb|EFH23480.1| putative rRNA methylase [Neisseria polysaccharea ATCC 43768]
Length = 188
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 9/179 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ + +G +D T GNG+DTL + + V G V+ D+Q +AL +T L +
Sbjct: 15 RQALPEGGNALDGTAGNGHDTLFLAQTVGIR---GKVWAFDVQPQALNNTRCRL----QE 67
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A V+L H +++ +P+ + FN G+LPGGDK++ T ET+ AL A +
Sbjct: 68 AGYSNVRLILDGHENLKQYIPEP--LDAAVFNFGWLPGGDKNLTTDKETSIAALSATLSL 125
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L G++ ++Y GH G++E EAV +A++L + + ++ NR P + F++
Sbjct: 126 LKENGMLIAILYPGHENGKQEAEAVGQWAKNLPQEQFAVLRYGFTNRKNNPPYLLAFEK 184
>gi|239637916|ref|ZP_04678877.1| SAM-dependent methyltransferase, MraW methylase family
[Staphylococcus warneri L37603]
gi|239596479|gb|EEQ79015.1| SAM-dependent methyltransferase, MraW methylase family
[Staphylococcus warneri L37603]
Length = 187
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 13/173 (7%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157
V+DATCGNG DTL + + V + G VYG DIQ A+ +T + ++ VKL
Sbjct: 24 VIDATCGNGNDTLYLAQHVPN----GFVYGFDIQQLAIDNTKMKVSTYSN------VKLI 73
Query: 158 NMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215
H +++ + + ++ A FNLGYLP GDKS++TT +TT A++ IL G+I
Sbjct: 74 KDGHENVKQYISEDHIGKVDAAIFNLGYLPKGDKSIVTTPQTTISAIQNIFDILNEEGII 133
Query: 216 SMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
+V+Y GH G+ E +A+ + L + ++Q +N + AP + + KR
Sbjct: 134 ILVIYHGHDEGKIERDALMDYLTQLDQNQAHVLQYQFINQKNNAPFICAIEKR 186
>gi|429763650|ref|ZP_19295997.1| putative rRNA methylase [Anaerostipes hadrus DSM 3319]
gi|291559257|emb|CBL38057.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [butyrate-producing
bacterium SSC/2]
gi|429178159|gb|EKY19443.1| putative rRNA methylase [Anaerostipes hadrus DSM 3319]
Length = 180
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 91/181 (50%), Gaps = 10/181 (5%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
V +++GD +DAT G G DT + + +G VY D+Q++AL+ T LDK
Sbjct: 8 VLDEYIKEGDCCIDATMGKGGDTYYLCSKTGE---SGKVYAFDVQADALRQTREKLDKHK 64
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
AE L H M+E V K AV + FNLGYLPGGD + T + TT A+EA
Sbjct: 65 MNAE-----LILDGHEHMKEYV-KEMAVSCIMFNLGYLPGGDHHLATKTNTTIQAVEAGL 118
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL-VFLF 265
+L GG++S+ +Y G G EE + V + L + + N+ P + VF+
Sbjct: 119 GMLKTGGIMSICIYSGGDSGFEERDGVLEYLSQLDDRKYFIARQDFPNKKNNPPMPVFII 178
Query: 266 K 266
K
Sbjct: 179 K 179
>gi|282850215|ref|ZP_06259594.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
gi|294791867|ref|ZP_06757015.1| SAM-dependent methyltransferase, MraW methylase family [Veillonella
sp. 6_1_27]
gi|416999088|ref|ZP_11939757.1| putative rRNA methylase [Veillonella parvula ACS-068-V-Sch12]
gi|282579708|gb|EFB85112.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
gi|294457097|gb|EFG25459.1| SAM-dependent methyltransferase, MraW methylase family [Veillonella
sp. 6_1_27]
gi|333977241|gb|EGL78100.1| putative rRNA methylase [Veillonella parvula ACS-068-V-Sch12]
Length = 191
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 4/181 (2%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+W + VVDATCGNG+D L + K A +YG+DIQ +A+K++ LL
Sbjct: 14 IWDRCMENAKVVVDATCGNGHDLLYLSKRA---QKACHLYGIDIQMKAIKTSKELLQSND 70
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
E L + + H K + L+ FNLGYLPGGD V+T T A+
Sbjct: 71 IAPEVSLTFIHD-SHDLAVAHQLKDEVIDLMIFNLGYLPGGDHQVVTKPHQTIDAINEGL 129
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
L G+I++V Y G G EE+++++++ L + C + +N+ P +F+ +
Sbjct: 130 HKLSKSGVITIVAYPGTTEGFEEMQSLKSYLSDLDQKIYNVCHWHPMNQIHNPPELFILQ 189
Query: 267 R 267
+
Sbjct: 190 K 190
>gi|269797986|ref|YP_003311886.1| rRNA methylase [Veillonella parvula DSM 2008]
gi|269094615|gb|ACZ24606.1| putative rRNA methylase [Veillonella parvula DSM 2008]
Length = 191
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 4/181 (2%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+W + VVDATCGNG+D L + K A +YG+DIQ +A+K++ LL
Sbjct: 14 IWDRCMENAKVVVDATCGNGHDLLYLSKRA---QKACHLYGIDIQMKAIKTSKELLQSND 70
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
E L + + H K + L+ FNLGYLPGGD V+T T A+
Sbjct: 71 IAPEVSLTFIHD-SHDLAVAHQLKDEVIDLMIFNLGYLPGGDHQVVTKPHQTIDAINEGL 129
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
+ L G+I++V Y G G EE+++++++ L + C + +N+ P +F+ +
Sbjct: 130 QKLSKSGVITIVAYPGTTEGFEEMQSLKSYLTDLDQKIYNVCHWHPMNQIHNPPELFILQ 189
Query: 267 R 267
+
Sbjct: 190 K 190
>gi|314936143|ref|ZP_07843490.1| putative rRNA methylase [Staphylococcus hominis subsp. hominis C80]
gi|313654762|gb|EFS18507.1| putative rRNA methylase [Staphylococcus hominis subsp. hominis C80]
Length = 186
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 99/197 (50%), Gaps = 21/197 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TLI K ++ V+DATCGNG DTL + A++ G V+G DIQ E
Sbjct: 8 PFAKTLI--------KQHIQDDSIVIDATCGNGNDTLFL----AEQVPNGKVFGFDIQKE 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSV 191
A++ T +K S V L + H + +P V FNLGYLP GDK++
Sbjct: 56 AIEHTK---EKIVSFKH---VTLIHDGHENILNDIPSDVIGNVDAAIFNLGYLPKGDKTI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T ETT A+E+ ++L G+I +V+Y GH G+ E + + + + K+Q
Sbjct: 110 VTKPETTIQAIESIFKLLSTEGIIVLVIYHGHKEGQIERDELLKYLENFDQSKAHILKYQ 169
Query: 252 MLNR-PLAPVLVFLFKR 267
+N+ AP + + KR
Sbjct: 170 FINQVNHAPFICAIEKR 186
>gi|420212486|ref|ZP_14717836.1| hypothetical protein HMPREF9975_08675 [Staphylococcus epidermidis
NIHLM001]
gi|394279761|gb|EJE24061.1| hypothetical protein HMPREF9975_08675 [Staphylococcus epidermidis
NIHLM001]
Length = 187
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ V+DATCGNG DT + V + G VYG DIQ +A+ +T KT +
Sbjct: 18 INHNSIVIDATCGNGNDTAYFAQHVPN----GFVYGFDIQEQAILNTHK---KTKDYSN- 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + +P + FNLGYLP G+K ++T ETT MA+ IL
Sbjct: 70 --VKLIQSGHENAKLHIPAQHHGCIDAAIFNLGYLPKGNKEIVTKPETTIMAINEIFDIL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
G+I +V+Y GH G+ E EA+ F ++ ++ ++Q +N + AP + + KR
Sbjct: 128 SIEGIIILVIYHGHEEGKVEKEALLEFLQNFDQNNAHILQYQFINQKNNAPFICAIEKR 186
>gi|167767427|ref|ZP_02439480.1| hypothetical protein CLOSS21_01946 [Clostridium sp. SS2/1]
gi|167711402|gb|EDS21981.1| putative rRNA methylase [Clostridium sp. SS2/1]
Length = 184
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 91/181 (50%), Gaps = 10/181 (5%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
V +++GD +DAT G G DT + + +G VY D+Q++AL+ T LDK
Sbjct: 12 VLDEYIKEGDCCIDATMGKGGDTYYLCSKTGE---SGKVYAFDVQADALRQTREKLDKHK 68
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
AE L H M+E V K AV + FNLGYLPGGD + T + TT A+EA
Sbjct: 69 MNAE-----LILDGHEHMKEYV-KEMAVSCIMFNLGYLPGGDHHLATKTNTTIQAVEAGL 122
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL-VFLF 265
+L GG++S+ +Y G G EE + V + L + + N+ P + VF+
Sbjct: 123 GMLKTGGIMSICIYSGGDSGFEERDGVLEYLSQLDDRKYFIARQDFPNKKNNPPMPVFII 182
Query: 266 K 266
K
Sbjct: 183 K 183
>gi|417643779|ref|ZP_12293807.1| putative rRNA methylase [Staphylococcus warneri VCU121]
gi|445059351|ref|YP_007384755.1| hypothetical protein A284_04970 [Staphylococcus warneri SG1]
gi|330685454|gb|EGG97109.1| putative rRNA methylase [Staphylococcus epidermidis VCU121]
gi|443425408|gb|AGC90311.1| hypothetical protein A284_04970 [Staphylococcus warneri SG1]
Length = 187
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 13/173 (7%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157
V+DATCGNG DTL + A + G VYG DIQ A+ +T + ++ VKL
Sbjct: 24 VIDATCGNGNDTLFL----AQQVPHGFVYGFDIQQLAIDNTKMKVSNYSN------VKLI 73
Query: 158 NMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215
H +++ + K V FNLGYLP GDKS++TT +TT A++ +L G+I
Sbjct: 74 KDGHENVKQYITKDHIGNVDAAIFNLGYLPKGDKSIVTTHQTTISAIQNIFDLLNEEGII 133
Query: 216 SMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
+V+Y GH G+ E +A+ + L ++Q +N + AP + + KR
Sbjct: 134 ILVIYHGHDEGKIERDALMDYLTHLDQKQAHVLQYQFINQKNNAPFICAIEKR 186
>gi|262283226|ref|ZP_06060993.1| methyltransferase [Streptococcus sp. 2_1_36FAA]
gi|262261478|gb|EEY80177.1| methyltransferase [Streptococcus sp. 2_1_36FAA]
Length = 184
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + ++ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDIVVDATMGNGHDTLFLAQL------AKQVYAFDIQEQAVEKTRQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
AE GL +L H +++ A FNLGYLP DKSVIT +TT A
Sbjct: 61 -----AEAGLDNAQLILAGHETLDQYTDHFKAA---IFNLGYLPSADKSVITRPDTTLEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
LE L G +++++Y GH GG E +AV F L D+ ++ +N+ P
Sbjct: 113 LEKVCHGLEKCGRVAIMIYYGHEGGEVEKDAVLDFVSQLPQQDFTVALYKTINQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|418327461|ref|ZP_12938616.1| MraW methylase-like family protein [Staphylococcus epidermidis
14.1.R1.SE]
gi|365232951|gb|EHM73924.1| MraW methylase-like family protein [Staphylococcus epidermidis
14.1.R1.SE]
Length = 187
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 13/173 (7%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157
V+DATCGNG DT + V + G VYG DIQ +A+ +T + ++ VKL
Sbjct: 24 VIDATCGNGNDTAYFAQHVPN----GFVYGFDIQEQAILNTHKKIKDYSN------VKLI 73
Query: 158 NMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215
H + +P + A FNLGYLP G+K ++T ETT MA+ IL G+I
Sbjct: 74 QSGHENAKLHIPAQHHGHIDAAIFNLGYLPKGNKEIVTKPETTIMAINEIFDILSIEGII 133
Query: 216 SMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
+V+Y GH G+ E EA+ F ++ + ++Q +N + AP + + KR
Sbjct: 134 ILVIYHGHEEGKIEKEALLEFLQNFDQNKAHILQYQFINQKNNAPFICAIEKR 186
>gi|317496762|ref|ZP_07955092.1| hypothetical protein HMPREF0996_00071 [Lachnospiraceae bacterium
5_1_63FAA]
gi|316895774|gb|EFV17926.1| hypothetical protein HMPREF0996_00071 [Lachnospiraceae bacterium
5_1_63FAA]
Length = 184
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 92/185 (49%), Gaps = 15/185 (8%)
Query: 88 WKH-----VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142
W H +++GD +DAT G G DT + + +G VY D+Q++AL+ T L
Sbjct: 8 WIHRVLDKYIKEGDCCIDATMGKGGDTYYLCSKTGE---SGKVYAFDVQADALRQTREKL 64
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL 202
DK AE L H M+E V K AV + FNLGYLPGGD + T + TT A+
Sbjct: 65 DKHKMNAE-----LILDGHEHMKEYV-KEMAVSCIMFNLGYLPGGDHHLATKTNTTIQAV 118
Query: 203 EAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL- 261
EA +L GG++S+ +Y G G EE + V + L + + N+ P +
Sbjct: 119 EAGLGMLKTGGIMSICIYSGGDSGFEERDGVLEYLSQLDDRKYFIARQDFPNKKNNPPMP 178
Query: 262 VFLFK 266
VF+ K
Sbjct: 179 VFIIK 183
>gi|422847262|ref|ZP_16893945.1| rRNA methylase [Streptococcus sanguinis SK72]
gi|325687100|gb|EGD29123.1| rRNA methylase [Streptococcus sanguinis SK72]
Length = 183
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 92/186 (49%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQAVEKTRQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
AE GL +L H +++ A FNLGYLP DKSVIT TT A
Sbjct: 61 -----AEAGLDNAQLILAGHETLDQYTDHFKAA---IFNLGYLPSADKSVITRPATTLEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
L + L GG ++++Y GH GG E +AV F L D+ ++ +N+ P
Sbjct: 113 LGKVCQGLEKGGRAAIMIYYGHEGGEVEKDAVLDFVSQLPQQDFTVALYKTINQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|417938063|ref|ZP_12581361.1| putative rRNA methylase [Streptococcus infantis SK970]
gi|343391153|gb|EGV03728.1| putative rRNA methylase [Streptococcus infantis SK970]
Length = 185
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 101 ATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL--VKLFN 158
AT GNG+DTL + K+ A VY DIQ +AL+ TS + E GL +L
Sbjct: 25 ATMGNGHDTLFLAKL------AKQVYAFDIQEQALEKTSQRIQ------EAGLSNAELIL 72
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H +++ V T V+ FNLGYLP DKS+IT TT AL+ +L+ GG I+++
Sbjct: 73 QGHETVDQFV---TEVKAAIFNLGYLPSADKSIITKPHTTIEALDKLCHMLVKGGRIAIM 129
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+Y GH GG E +AV F L ++ ++ LN+ P + + ++
Sbjct: 130 IYYGHEGGDIERDAVMDFVSQLPQQEYTATIYRTLNQINNPPFLVMIEK 178
>gi|161869691|ref|YP_001598858.1| hypothetical protein NMCC_0711 [Neisseria meningitidis 053442]
gi|161595244|gb|ABX72904.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 188
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 9/174 (5%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
+G +D T GNG+DTL + + G V+ DIQ +AL T L + +
Sbjct: 20 EGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALSRTRCRLKEARYEN---- 72
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
V+L H +++ V S + FN G+LPGGDKS+ T +ET+ AL A +L G
Sbjct: 73 VQLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTRTETSIAALSATLSLLKENG 130
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
++ V+Y GH G++E EA+E +A++L + + + NR P + F++
Sbjct: 131 MLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLSYGFTNRKNNPPYLLAFEK 184
>gi|422859558|ref|ZP_16906202.1| rRNA methylase [Streptococcus sanguinis SK330]
gi|327470441|gb|EGF15897.1| rRNA methylase [Streptococcus sanguinis SK330]
Length = 183
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 92/186 (49%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQAVEKTRQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
AE GL +L H +++ A FNLGYLP DKSVIT TT A
Sbjct: 61 -----AEAGLDNAQLILAGHETLDQYTDHFKAA---IFNLGYLPSADKSVITRPATTLEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
L + L GG ++++Y GH GG E +AV F L D+ ++ +N+ P
Sbjct: 113 LGKVCQGLEKGGRAAIMIYYGHEGGEVEKDAVLDFVSQLPQQDFTVALYKTINQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LVMIEK 178
>gi|409385284|ref|ZP_11237953.1| SAM-dependent methyltransferase, MraW methylase family [Lactococcus
raffinolactis 4877]
gi|399207282|emb|CCK18868.1| SAM-dependent methyltransferase, MraW methylase family [Lactococcus
raffinolactis 4877]
Length = 180
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 93/178 (52%), Gaps = 14/178 (7%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+ D VVDAT G GYDT+ + + AD V D+Q+ AL T L++ A
Sbjct: 15 VIVPEDLVVDATMGQGYDTVFLAGLKAD------VVAFDVQALALAMTEKRLEQAQLSA- 67
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
KL H + + + + ++ FNLGYLP DK VIT +ETT AL +L+
Sbjct: 68 ----KLILDGHENVGQYIEQP--IKAAIFNLGYLPKSDKKVITQAETTLSALTQLLDMLV 121
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFLFKR 267
GG I++++Y GH GG EE +AV AF L ++ ++ +N+ P LV + KR
Sbjct: 122 KGGRIALMIYYGHEGGLEERDAVLAFVSGLPQREFQVMRYGGINQANHPPFLVMIEKR 179
>gi|313887999|ref|ZP_07821677.1| putative rRNA methylase [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845954|gb|EFR33337.1| putative rRNA methylase [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 184
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 13/173 (7%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
G VDAT G G DTL +LK V + G VYG D+Q EAL LL A
Sbjct: 21 GKIAVDATVGKGNDTLKLLKAVGKD---GFVYGFDVQEEALSKARVLL------AGYDNY 71
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGL 214
+ F H+ ++ + + LV +NLG+LPG DK + T E+T +L A + GL
Sbjct: 72 EFFLDSHANIDRL----ESFDLVIYNLGFLPGSDKKITTLRESTLESLRKATEKINEAGL 127
Query: 215 ISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
I +V Y+GH EE E V+ F +SL + K + N+ P +V+L ++
Sbjct: 128 IILVSYLGHENSLEEREGVDEFLKSLDQKIFKVEKREFYNQKHNPPIVYLIEK 180
>gi|420178050|ref|ZP_14684384.1| hypothetical protein HMPREF9989_07266 [Staphylococcus epidermidis
NIHLM057]
gi|420180764|ref|ZP_14686974.1| hypothetical protein HMPREF9988_08126 [Staphylococcus epidermidis
NIHLM053]
gi|394247237|gb|EJD92485.1| hypothetical protein HMPREF9989_07266 [Staphylococcus epidermidis
NIHLM057]
gi|394248587|gb|EJD93821.1| hypothetical protein HMPREF9988_08126 [Staphylococcus epidermidis
NIHLM053]
Length = 187
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ V+DATCGNG DT + V + G VYG DIQ +A+ +T + ++
Sbjct: 18 INHNSIVIDATCGNGNDTAYFAQHVPN----GFVYGFDIQEQAILNTHKKIKNYSN---- 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + +P + A FNLGYLP G+K ++T ETT MA+ IL
Sbjct: 70 --VKLIQSGHENAKLHIPAEHHGHIDAAIFNLGYLPKGNKEIVTKPETTIMAINEIFDIL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
G+I +V+Y GH G+ E +A+ F ++ + ++Q +N + AP + + KR
Sbjct: 128 SIEGIIILVIYHGHEEGKVEKDALLEFLQNFDQNKAHILQYQFINQKNNAPFICAIEKR 186
>gi|304387944|ref|ZP_07370117.1| rRNA methyltransferase [Neisseria meningitidis ATCC 13091]
gi|385339725|ref|YP_005893597.1| putative rRNA methylase [Neisseria meningitidis G2136]
gi|416178744|ref|ZP_11610701.1| putative rRNA methylase [Neisseria meningitidis M6190]
gi|416183855|ref|ZP_11612761.1| putative rRNA methylase [Neisseria meningitidis M13399]
gi|416192680|ref|ZP_11616786.1| putative rRNA methylase [Neisseria meningitidis ES14902]
gi|433466899|ref|ZP_20424356.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
87255]
gi|433492251|ref|ZP_20449345.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM586]
gi|433502761|ref|ZP_20459726.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM126]
gi|304338041|gb|EFM04178.1| rRNA methyltransferase [Neisseria meningitidis ATCC 13091]
gi|325131797|gb|EGC54497.1| putative rRNA methylase [Neisseria meningitidis M6190]
gi|325133737|gb|EGC56393.1| putative rRNA methylase [Neisseria meningitidis M13399]
gi|325137847|gb|EGC60422.1| putative rRNA methylase [Neisseria meningitidis ES14902]
gi|325197969|gb|ADY93425.1| putative rRNA methylase [Neisseria meningitidis G2136]
gi|432203475|gb|ELK59526.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
87255]
gi|432229040|gb|ELK84733.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM586]
gi|432240857|gb|ELK96388.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM126]
Length = 188
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 93/179 (51%), Gaps = 9/179 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ + +G +D T GNG+DTL + + G V+ DIQ +AL T L + +
Sbjct: 15 RKALPEGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALSRTRCRLKEARYE 71
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
V+L H +++ V S + FN G+LPGGDKS+ T +ET+ AL A +
Sbjct: 72 N----VQLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTHTETSIPALCATLSL 125
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG++ V+Y GH G++E EA+E +A++L + + + NR P + F++
Sbjct: 126 LKEGGMLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLSYGFTNRKNNPPYLLAFEK 184
>gi|433468906|ref|ZP_20426335.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
98080]
gi|432205299|gb|ELK61329.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
98080]
Length = 188
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 9/174 (5%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
+G +D T GNG+DTL + + G V+ DIQ +AL T L + +
Sbjct: 20 EGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALSRTRCHLKEARYEN---- 72
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
V+L H +++ V S + FN G+LPGGDKS+ T +ET+ AL A +L GG
Sbjct: 73 VQLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTHTETSIPALCATLSLLKEGG 130
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
++ V+Y GH G++E EA+E +A++L + + + NR P + F++
Sbjct: 131 MLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLSYGFTNRKNNPPYLLAFEK 184
>gi|295110324|emb|CBL24277.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Ruminococcus obeum A2-162]
Length = 187
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 7/176 (3%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V+ GD +DAT GNG DTL++ + + G VY DIQ +AL T L
Sbjct: 18 VQPGDICIDATMGNGNDTLLLCSLCQE---TGHVYAFDIQEQALAHTRQKLQNADVPTN- 73
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
L H+ M+ V + +V + FNLGYLPGGD + T + ++ AL + +L
Sbjct: 74 --YTLLLESHANMDHYV-QPDSVSCIVFNLGYLPGGDHTKATLASSSIEALTKSLSLLKK 130
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GGLIS+ +Y G G EE +AV ++ ++L ++ + NRP P + L R
Sbjct: 131 GGLISLCIYSGGDSGFEERDAVLSWLKNLDSHKYLVIRSDYYNRPNNPPIPVLIIR 186
>gi|392972420|ref|ZP_10337812.1| rRNA methylase family protein [Staphylococcus equorum subsp.
equorum Mu2]
gi|403046246|ref|ZP_10901719.1| hypothetical protein SOJ_13280 [Staphylococcus sp. OJ82]
gi|392510133|emb|CCI61117.1| rRNA methylase family protein [Staphylococcus equorum subsp.
equorum Mu2]
gi|402763955|gb|EJX18044.1| hypothetical protein SOJ_13280 [Staphylococcus sp. OJ82]
Length = 186
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 88/167 (52%), Gaps = 12/167 (7%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157
V+DATCGNG DTL + A + G VY +DIQ EA+ +T K ++ V L
Sbjct: 24 VIDATCGNGNDTLFL----AQQVPHGKVYAMDIQIEAISNT-----KLKTEGYHN-VTLI 73
Query: 158 NMCHSRMEEIVP--KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215
H+ +++ +P + V FNLGYLP GDKS++T E+T A+ A IL P G+I
Sbjct: 74 QDSHAHVKQHIPVIEVGKVDAAIFNLGYLPKGDKSIVTQPESTLSAINAIFDILAPEGVI 133
Query: 216 SMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
+V+Y GH G+ E +A+ + ++Q +N+ P +
Sbjct: 134 ILVIYHGHDEGKLERDALIDYLSQFDQTKAHVLQYQFINQQNNPPFI 180
>gi|417646957|ref|ZP_12296807.1| putative rRNA methylase [Staphylococcus epidermidis VCU144]
gi|329725493|gb|EGG61973.1| putative rRNA methylase [Staphylococcus epidermidis VCU144]
Length = 187
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ V+DATCGNG DT + V + G VYG DIQ +A+ +T KT +
Sbjct: 18 INHNSIVIDATCGNGNDTAYFAQHVPN----GFVYGFDIQEQAILNTHK---KTKDYSN- 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + +P + FNLGYLP G+K ++T ETT MA+ IL
Sbjct: 70 --VKLIQSGHENAKLHIPAQHHGCIDAAIFNLGYLPKGNKEIVTKPETTIMAINEIFDIL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
G+I +V+Y GH G+ E EA+ F ++ + ++Q +N + AP + + KR
Sbjct: 128 SIEGIIILVIYHGHEEGKVEKEALLEFLQNFDQNKAHILQYQFINQKNNAPFICAIEKR 186
>gi|424834169|ref|ZP_18258884.1| hypothetical protein IYC_11399 [Clostridium sporogenes PA 3679]
gi|365978801|gb|EHN14868.1| hypothetical protein IYC_11399 [Clostridium sporogenes PA 3679]
Length = 188
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 9/176 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + K+ + GD VD T G G+DT+++ +V +E G V DIQ EA+ T L
Sbjct: 13 AKYICKNSLEFGDIAVDCTLGKGHDTILLANLVGNE---GKVISFDIQKEAIYKTKERLK 69
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + L N H ++ + + V+L FNLGYLPG D ++ T +ETT AL+
Sbjct: 70 DLDHRN----ITLINDGHENLDNYIQEK--VKLFIFNLGYLPGKDHNITTKAETTLKALK 123
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
A ++L G++ +V+Y GH G+EE +E F L D+ K +N+ P
Sbjct: 124 KALKLLGDNGIVLLVIYYGHENGKEEKAVLEKFTSELDQKDYNVMKNSFINQANDP 179
>gi|255065187|ref|ZP_05317042.1| putative rRNA methylase [Neisseria sicca ATCC 29256]
gi|255050608|gb|EET46072.1| putative rRNA methylase [Neisseria sicca ATCC 29256]
Length = 189
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 12/186 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + K ++ +D T GNG DTLM+ + V G V+ DIQ +AL +T L+
Sbjct: 10 AHSLLKQALKPDARALDGTAGNGNDTLMLARSV---GRGGKVWAFDIQEQALANTRMRLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ A++ V+L H + + P AV FN G+LPGGDKS T + T+ A
Sbjct: 67 EA-GMADR--VELILDGHENLATHIREPLDAAV----FNFGWLPGGDKSCTTKAATSIRA 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
L +A +L GG+ V+Y GH GR E +A+E +A+ L D++ ++ +NR P
Sbjct: 120 LASALSLLKTGGVAVAVLYPGHEAGRHEAQAIEDWAQRLPQDEFAVLRYGFINRRNCPPY 179
Query: 262 VFLFKR 267
+ F++
Sbjct: 180 LLAFEK 185
>gi|410594811|ref|YP_006951538.1| rRNA methylase ytqB [Streptococcus agalactiae SA20-06]
gi|410518450|gb|AFV72594.1| rRNA methylase ytqB [Streptococcus agalactiae SA20-06]
Length = 161
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 89/166 (53%), Gaps = 14/166 (8%)
Query: 103 CGNGYDTLMMLKMVADESSAGCVYGLDIQSEAL-KSTSSLLDKTTSKAEKGLVKLFNMCH 161
GNG DT+ + K S+ VY DIQ EA+ K+ + L ++ S AE L H
Sbjct: 1 MGNGNDTVFLAK------SSKKVYAFDIQEEAIAKTKAKLTEQGISNAE-----LILDGH 49
Query: 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221
+E+ V T +R FNLGYLP DK+VIT TT A++ IL GG +S++VY
Sbjct: 50 ENLEQYV--HTPLRAAIFNLGYLPSADKTVITKPHTTIKAIKNVLDILEVGGRLSLMVYY 107
Query: 222 GHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GH GG+ E +AV AF L +++ +Q LN+ P + + ++
Sbjct: 108 GHDGGKSEKDAVIAFVEQLPQNNFATMLYQPLNQVNTPPFLIMVEK 153
>gi|392426922|ref|YP_006467916.1| Putative rRNA methylase [Desulfosporosinus acidiphilus SJ4]
gi|391356885|gb|AFM42584.1| Putative rRNA methylase [Desulfosporosinus acidiphilus SJ4]
Length = 191
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 16/179 (8%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + K + +GD VD T GNG DT + +V + G VY DIQ +AL +TS L
Sbjct: 12 AKKICKAKLTEGDRAVDCTMGNGNDTAFLSSLVGKD---GRVYAFDIQEQALVNTSKKLQ 68
Query: 144 KTTSKAEKGLVKLFNMC--HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ L + +C H +E+ + + VR+ FNLGYLP GD S+ T ETT A
Sbjct: 69 ELNF-----LDRAVLICDGHETIEKYIKE--PVRVFLFNLGYLPKGDHSITTQKETTLQA 121
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDW----ICCKFQMLNRP 256
++ +L P G+I +V+Y GH G+ E EA+ ++ +L ++ IC Q+ N P
Sbjct: 122 VQKCLNLLEPDGIILLVIYPGHDNGKAEQEALVRYSSTLDQKNYNVARICLTNQVNNPP 180
>gi|336433031|ref|ZP_08612861.1| hypothetical protein HMPREF0991_01980 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336017701|gb|EGN47459.1| hypothetical protein HMPREF0991_01980 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 192
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 99/198 (50%), Gaps = 15/198 (7%)
Query: 75 LSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA 134
+ G IT + + K +++GD VDAT GNG DT + ++ + G VY DIQ A
Sbjct: 1 MPGYQITEYCHRMIKEHIKEGDCCVDATAGNGNDTEFLCRLTG---ADGKVYAFDIQKAA 57
Query: 135 LKSTSSLLDKT--TSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVI 192
++ T L++ T +A K+ H ME V ++ V + FN GYLPGGD +
Sbjct: 58 VEHTKKRLEEAGLTERA-----KVILDGHEHMENYVRET--VSAITFNFGYLPGGDHQIA 110
Query: 193 TTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDW---ICCK 249
T ++T+ A+EA R+L GG++S+ +Y G G E EA+ ++ +L + +
Sbjct: 111 TQADTSIQAIEAGLRLLKKGGIMSLCIYSGGDSGFAEKEALLSYLETLDSRTFLVIVSTY 170
Query: 250 FQMLNRPLAPVLVFLFKR 267
+ N P P V K
Sbjct: 171 YNRQNHPPIPAFVIRIKE 188
>gi|416188244|ref|ZP_11614713.1| putative rRNA methylase [Neisseria meningitidis M0579]
gi|325136027|gb|EGC58637.1| putative rRNA methylase [Neisseria meningitidis M0579]
Length = 188
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 9/174 (5%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
+G +D T GNG+DTL + + G V+ DIQ +AL T L + +
Sbjct: 20 EGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALSRTRCRLKEARYEN---- 72
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
V+L H +++ V S + FN G+LPGGDKS+ T +ET+ AL A +L G
Sbjct: 73 VQLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTRTETSIAALSATLSLLKENG 130
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
++ V+Y GH G++E EAV +A++L + + ++ NR +P + F++
Sbjct: 131 MLIAVLYPGHENGKQEAEAVGQWAKNLPQEQFAVLRYGFTNRKNSPPYLLAFEK 184
>gi|27468352|ref|NP_764989.1| hypothetical protein SE1434 [Staphylococcus epidermidis ATCC 12228]
gi|251811142|ref|ZP_04825615.1| rRNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
gi|282875819|ref|ZP_06284686.1| rRNA methylase family protein [Staphylococcus epidermidis SK135]
gi|417655928|ref|ZP_12305619.1| putative rRNA methylase [Staphylococcus epidermidis VCU028]
gi|417911411|ref|ZP_12555118.1| putative rRNA methylase [Staphylococcus epidermidis VCU105]
gi|417914307|ref|ZP_12557959.1| putative rRNA methylase [Staphylococcus epidermidis VCU109]
gi|418603759|ref|ZP_13167140.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU041]
gi|418610105|ref|ZP_13173231.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU065]
gi|418612538|ref|ZP_13175573.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU117]
gi|418618191|ref|ZP_13181070.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU120]
gi|418622971|ref|ZP_13185700.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU123]
gi|418627253|ref|ZP_13189832.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU126]
gi|418629568|ref|ZP_13192066.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU127]
gi|418664047|ref|ZP_13225544.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU081]
gi|419769342|ref|ZP_14295438.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-250]
gi|419771437|ref|ZP_14297491.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-K]
gi|420163899|ref|ZP_14670633.1| hypothetical protein HMPREF9995_08053 [Staphylococcus epidermidis
NIHLM095]
gi|420166642|ref|ZP_14673325.1| hypothetical protein HMPREF9994_10506 [Staphylococcus epidermidis
NIHLM088]
gi|420168524|ref|ZP_14675132.1| hypothetical protein HMPREF9993_07291 [Staphylococcus epidermidis
NIHLM087]
gi|420173271|ref|ZP_14679766.1| hypothetical protein HMPREF9991_07491 [Staphylococcus epidermidis
NIHLM067]
gi|420183407|ref|ZP_14689538.1| hypothetical protein HMPREF9987_08450 [Staphylococcus epidermidis
NIHLM049]
gi|420187051|ref|ZP_14693074.1| hypothetical protein HMPREF9985_02252 [Staphylococcus epidermidis
NIHLM039]
gi|420195406|ref|ZP_14701199.1| hypothetical protein HMPREF9982_07563 [Staphylococcus epidermidis
NIHLM021]
gi|420196986|ref|ZP_14702720.1| hypothetical protein HMPREF9981_03015 [Staphylococcus epidermidis
NIHLM020]
gi|420202761|ref|ZP_14708350.1| hypothetical protein HMPREF9979_08394 [Staphylococcus epidermidis
NIHLM018]
gi|420209247|ref|ZP_14714685.1| hypothetical protein HMPREF9976_05175 [Staphylococcus epidermidis
NIHLM003]
gi|420215151|ref|ZP_14720423.1| hypothetical protein HMPREF9974_08830 [Staphylococcus epidermidis
NIH05005]
gi|420216801|ref|ZP_14721997.1| hypothetical protein HMPREF9973_04868 [Staphylococcus epidermidis
NIH05001]
gi|420220686|ref|ZP_14725645.1| hypothetical protein HMPREF9972_10399 [Staphylococcus epidermidis
NIH04008]
gi|420227534|ref|ZP_14732302.1| putative rRNA methylase [Staphylococcus epidermidis NIH05003]
gi|420234904|ref|ZP_14739464.1| putative rRNA methylase [Staphylococcus epidermidis NIH051475]
gi|421606763|ref|ZP_16048017.1| hypothetical protein B440_00398 [Staphylococcus epidermidis
AU12-03]
gi|27315898|gb|AAO05033.1|AE016748_267 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|251805362|gb|EES58019.1| rRNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
gi|281294844|gb|EFA87371.1| rRNA methylase family protein [Staphylococcus epidermidis SK135]
gi|329737178|gb|EGG73432.1| putative rRNA methylase [Staphylococcus epidermidis VCU028]
gi|341653005|gb|EGS76779.1| putative rRNA methylase [Staphylococcus epidermidis VCU109]
gi|341653734|gb|EGS77501.1| putative rRNA methylase [Staphylococcus epidermidis VCU105]
gi|374405521|gb|EHQ76453.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU065]
gi|374407077|gb|EHQ77946.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU041]
gi|374410937|gb|EHQ81666.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU081]
gi|374816433|gb|EHR80637.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU120]
gi|374818863|gb|EHR83006.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU117]
gi|374825078|gb|EHR89026.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU123]
gi|374829928|gb|EHR93720.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU126]
gi|374833431|gb|EHR97115.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU127]
gi|383358411|gb|EID35870.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-250]
gi|383361663|gb|EID39033.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-K]
gi|394233025|gb|EJD78636.1| hypothetical protein HMPREF9995_08053 [Staphylococcus epidermidis
NIHLM095]
gi|394233233|gb|EJD78841.1| hypothetical protein HMPREF9993_07291 [Staphylococcus epidermidis
NIHLM087]
gi|394233512|gb|EJD79116.1| hypothetical protein HMPREF9994_10506 [Staphylococcus epidermidis
NIHLM088]
gi|394240449|gb|EJD85873.1| hypothetical protein HMPREF9991_07491 [Staphylococcus epidermidis
NIHLM067]
gi|394249119|gb|EJD94340.1| hypothetical protein HMPREF9987_08450 [Staphylococcus epidermidis
NIHLM049]
gi|394256798|gb|EJE01724.1| hypothetical protein HMPREF9985_02252 [Staphylococcus epidermidis
NIHLM039]
gi|394263360|gb|EJE08096.1| hypothetical protein HMPREF9982_07563 [Staphylococcus epidermidis
NIHLM021]
gi|394266960|gb|EJE11578.1| hypothetical protein HMPREF9981_03015 [Staphylococcus epidermidis
NIHLM020]
gi|394269118|gb|EJE13659.1| hypothetical protein HMPREF9979_08394 [Staphylococcus epidermidis
NIHLM018]
gi|394279475|gb|EJE23783.1| hypothetical protein HMPREF9976_05175 [Staphylococcus epidermidis
NIHLM003]
gi|394282600|gb|EJE26790.1| hypothetical protein HMPREF9974_08830 [Staphylococcus epidermidis
NIH05005]
gi|394286039|gb|EJE30105.1| hypothetical protein HMPREF9972_10399 [Staphylococcus epidermidis
NIH04008]
gi|394291328|gb|EJE35146.1| hypothetical protein HMPREF9973_04868 [Staphylococcus epidermidis
NIH05001]
gi|394297158|gb|EJE40770.1| putative rRNA methylase [Staphylococcus epidermidis NIH05003]
gi|394304147|gb|EJE47557.1| putative rRNA methylase [Staphylococcus epidermidis NIH051475]
gi|406657541|gb|EKC83926.1| hypothetical protein B440_00398 [Staphylococcus epidermidis
AU12-03]
Length = 187
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ V+DATCGNG DT + V + G VYG DIQ +A+ +T KT +
Sbjct: 18 INHNSIVIDATCGNGNDTAYFAQHVPN----GFVYGFDIQEQAILNTHK---KTKDYSN- 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + +P + FNLGYLP G+K ++T ETT MA+ IL
Sbjct: 70 --VKLIQSGHENAKLHIPAQHHGCIDAAIFNLGYLPKGNKEIVTKPETTIMAINEIFDIL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
G+I +V+Y GH G+ E EA+ F ++ + ++Q +N + AP + + KR
Sbjct: 128 SIEGIIILVIYHGHEEGKVEKEALLEFLQNFDQNKAHILQYQFINQKNNAPFICAIEKR 186
>gi|218767870|ref|YP_002342382.1| hypothetical protein NMA0960 [Neisseria meningitidis Z2491]
gi|385337703|ref|YP_005891576.1| putative rRNA methyltransferase [Neisseria meningitidis WUE 2594]
gi|433475358|ref|ZP_20432699.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
88050]
gi|433479599|ref|ZP_20436893.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
63041]
gi|433513107|ref|ZP_20469901.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
63049]
gi|433515534|ref|ZP_20472306.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
2004090]
gi|433517254|ref|ZP_20474003.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
96023]
gi|433519474|ref|ZP_20476195.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
65014]
gi|433523887|ref|ZP_20480552.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
97020]
gi|433527863|ref|ZP_20484474.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM3652]
gi|433530037|ref|ZP_20486630.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM3642]
gi|433532295|ref|ZP_20488861.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
2007056]
gi|433534214|ref|ZP_20490759.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
2001212]
gi|433540607|ref|ZP_20497062.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
63006]
gi|121051878|emb|CAM08184.1| hypothetical protein NMA0960 [Neisseria meningitidis Z2491]
gi|319410117|emb|CBY90453.1| putative rRNA methyltransferase [Neisseria meningitidis WUE 2594]
gi|432211176|gb|ELK67131.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
88050]
gi|432217402|gb|ELK73271.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
63041]
gi|432248784|gb|ELL04208.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
63049]
gi|432254122|gb|ELL09458.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
2004090]
gi|432254263|gb|ELL09598.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
96023]
gi|432255465|gb|ELL10794.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
65014]
gi|432260786|gb|ELL16044.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
97020]
gi|432266170|gb|ELL21358.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM3652]
gi|432267965|gb|ELL23137.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
NM3642]
gi|432268240|gb|ELL23411.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
2007056]
gi|432272724|gb|ELL27831.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
2001212]
gi|432277622|gb|ELL32668.1| ubiE/COQ5 methyltransferase family protein [Neisseria meningitidis
63006]
Length = 188
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 9/179 (5%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ + +G +D T GNG+DTL + + G V+ DIQ +AL +T L +
Sbjct: 15 RQALPEGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALNNTRCRL----QE 67
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A V+L H +++ +PK + FN G+LPGGDKS+ T +ET+ AL AA +
Sbjct: 68 AGYSNVRLILDGHENLKQYIPKPLDAAI--FNFGWLPGGDKSLTTRTETSIAALSAALSL 125
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L G++ V+Y GH G++E EA+E +A++L + + ++ NR +P + F++
Sbjct: 126 LKENGMLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLRYSFTNRKNSPPYLLAFEK 184
>gi|125718569|ref|YP_001035702.1| hypothetical protein SSA_1769 [Streptococcus sanguinis SK36]
gi|125498486|gb|ABN45152.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 183
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 92/186 (49%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + ++ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDIVVDATMGNGHDTLFLAQL------AKQVYAFDIQEQAVEKTRQRL- 60
Query: 144 KTTSKAEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
AE GL +L H +++ A FNLGYLP DKSVIT TT A
Sbjct: 61 -----AEAGLDNAQLILAGHETLDQYTDHFKAA---IFNLGYLPSADKSVITRPATTLEA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
L + L GG ++++Y GH GG E +AV F L D+ ++ +N+ P
Sbjct: 113 LGKVCQGLANGGRAAIMIYYGHDGGEVEKDAVLDFVSQLPQQDFTVALYKTINQINNPPF 172
Query: 262 VFLFKR 267
+ + ++
Sbjct: 173 LIMIEK 178
>gi|325265811|ref|ZP_08132497.1| rRNA methyltransferase [Kingella denitrificans ATCC 33394]
gi|324982449|gb|EGC18075.1| rRNA methyltransferase [Kingella denitrificans ATCC 33394]
Length = 222
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 15/180 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+R+GD V+D T GNG+DTL++ + V + G V+ DIQ+ A+++T + L AE
Sbjct: 40 IREGDCVMDGTAGNGHDTLLLAQCVGE---TGRVFAFDIQAAAIEATRARL------AEH 90
Query: 152 GL---VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
GL V L H + + + +R FN GYLP GDK++ T ET+ A++AA +
Sbjct: 91 GLLPRVTLIQDGHQHAAQYIRQP--LRAAVFNFGYLPHGDKNITTLPETSVAAVQAALNL 148
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFKR 267
L GL+ VVY GH G+ E A+ + +L + ++ +NR AP +V + K+
Sbjct: 149 LDKDGLLIAVVYHGHEAGKAEKAALLDYFAALPARRFSVLRYGHVNRLNAAPFVVAVEKK 208
>gi|420198701|ref|ZP_14704393.1| hypothetical protein HMPREF9980_00325 [Staphylococcus epidermidis
NIHLM031]
gi|394273877|gb|EJE18304.1| hypothetical protein HMPREF9980_00325 [Staphylococcus epidermidis
NIHLM031]
Length = 187
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ V+DATCGNG DT + V + G VYG DIQ +A+ +T + ++
Sbjct: 18 INHNSVVIDATCGNGNDTAYFAQHVPN----GFVYGFDIQEQAILNTHKKIKNYSN---- 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + +P + A FNLGYLP G+K ++T ETT A+ IL
Sbjct: 70 --VKLIQSGHENAKLHIPSEHHGHIDAAIFNLGYLPKGNKEIVTKPETTIKAINEIFDIL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
G+I +V+Y GH G+ E EA+ F ++ + ++Q +N + AP + + KR
Sbjct: 128 SIEGIIILVIYHGHEEGKVEKEALLEFLQNFDQNKAHILQYQFINQKNNAPFICAIEKR 186
>gi|258424175|ref|ZP_05687057.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|417889937|ref|ZP_12534016.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21200]
gi|418282124|ref|ZP_12894912.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21202]
gi|418307083|ref|ZP_12918822.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21194]
gi|418560507|ref|ZP_13125022.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21252]
gi|418889563|ref|ZP_13443696.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418994480|ref|ZP_13542115.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG290]
gi|257845796|gb|EEV69828.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|341855630|gb|EGS96474.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21200]
gi|365171502|gb|EHM62330.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21202]
gi|365246010|gb|EHM86600.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21194]
gi|371972067|gb|EHO89458.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21252]
gi|377744277|gb|EHT68255.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG290]
gi|377753071|gb|EHT76989.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1524]
Length = 187
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H+ + VVDATCGNG DTL + A++ G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHITPES-IVVDATCGNGNDTLFL----AEQVPEGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL++T DK L+K H +E + + + A FNLGYLP GDKS+
Sbjct: 56 ALENTR---DKVKDFNHVSLIK---DGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A+ + ++ G+I +V+Y GH G+ E A+ + +L K+Q
Sbjct: 110 VTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHNEGQIEKHALLDYLSTLDQKHAQVLKYQ 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|336436785|ref|ZP_08616495.1| hypothetical protein HMPREF0988_02080 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336006604|gb|EGN36637.1| hypothetical protein HMPREF0988_02080 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 188
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 94/188 (50%), Gaps = 9/188 (4%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
IT K + +GD +DAT GNG DT + +MV + +G V DIQ AL+ T
Sbjct: 7 ITEYCQNFMKDYIGEGDLCIDATAGNGGDTEFLCRMVGE---SGRVCAFDIQDAALEYTK 63
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTK 199
L+K+ AE+ + L H RM V + A + FN GYLPG D +V T +ET+
Sbjct: 64 ERLEKS-GLAERAV--LIRDGHERMGYYVKEEVAA--IMFNFGYLPGADHAVATKAETSL 118
Query: 200 MALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
A+ +L GG++S+ +Y G G EE + F ++L W+ + NR P
Sbjct: 119 AAIRCGMELLKVGGVMSLCIYSGGDTGYEERTVLLGFLKTLDPKRWLVLVHEFYNRKNDP 178
Query: 260 VL-VFLFK 266
L VFL K
Sbjct: 179 PLPVFLVK 186
>gi|420232258|ref|ZP_14736899.1| putative rRNA methylase [Staphylococcus epidermidis NIH051668]
gi|394301581|gb|EJE45037.1| putative rRNA methylase [Staphylococcus epidermidis NIH051668]
Length = 187
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ V+DATCGNG DT + V + G VYG DIQ +A+ +T KT +
Sbjct: 18 INHNSIVIDATCGNGNDTAYFAQHVPN----GFVYGFDIQEQAILNTHK---KTKDYSN- 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + +P + FNLGYLP G+K ++T ETT MA+ IL
Sbjct: 70 --VKLIQSGHENSKLHIPAQHHGCIDAAIFNLGYLPKGNKEIVTKPETTIMAINEIFDIL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
G+I +V+Y GH G+ E EA+ F ++ + ++Q +N + AP + + KR
Sbjct: 128 SIEGIIILVIYHGHEEGKVEKEALLEFLQNFDQNKAHILQYQFINQKNNAPFICAIEKR 186
>gi|95928571|ref|ZP_01311318.1| putative rRNA methylase [Desulfuromonas acetoxidans DSM 684]
gi|95135361|gb|EAT17013.1| putative rRNA methylase [Desulfuromonas acetoxidans DSM 684]
Length = 216
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 96/198 (48%), Gaps = 25/198 (12%)
Query: 88 WKH-----VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142
W H V+ GD +D T G G D L + + V D +S G V DIQ EA+ ST+SLL
Sbjct: 13 WSHTFAAEVLEAGDLAIDLTAGRGKDCLHLARCV-DSNSHGTVLAFDIQHEAIHSTTSLL 71
Query: 143 DK------TTSKAEKGL---VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT 193
+ T S+ ++ V L H ++ P+ V + NLGYLPGGD ++ T
Sbjct: 72 TEQRMTVATISRPQQVTGPGVFLIQTSHEQLSLFSPRQAKV--IMANLGYLPGGDHAITT 129
Query: 194 TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQML 253
+++T ++ A L+ GG + +VVY GH G +EE +A+ L W
Sbjct: 130 RADSTLKTIKEALTELLSGGRLILVVYTGHEGAQEESQAITTHLADLHPRHWHIITM--- 186
Query: 254 NRPL----APVLVFLFKR 267
RP AP L+ + KR
Sbjct: 187 -RPFLCHNAPYLLVVEKR 203
>gi|82751349|ref|YP_417090.1| hypothetical protein SAB1621 [Staphylococcus aureus RF122]
gi|82656880|emb|CAI81310.1| conserved hypothetical protein [Staphylococcus aureus RF122]
Length = 187
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H+ + VVDATCGNG DTL + A++ G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHITPES-IVVDATCGNGNDTLFL----AEQVPEGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL++T DK L+K H +E + + + A FNLGYLP GDKS+
Sbjct: 56 ALENTR---DKVKDFNHVSLIK---DGHENIEHHINDAHKGHIAAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A+ + ++ G+I +V+Y GH G+ E A+ + +L ++Q
Sbjct: 110 VTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLDQKHAQVLQYQ 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|416125470|ref|ZP_11596068.1| rRNA methylase family protein [Staphylococcus epidermidis FRI909]
gi|319401067|gb|EFV89286.1| rRNA methylase family protein [Staphylococcus epidermidis FRI909]
Length = 187
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ V+DATCGNG DT + V + G VYG DIQ +A+ +T + ++
Sbjct: 18 INHNSVVIDATCGNGNDTAYFAQHVPN----GFVYGFDIQEQAILNTHKKIKNYSN---- 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + +P + A FNLGYLP G+K ++T ETT A+ IL
Sbjct: 70 --VKLIQSGHENAKLHIPSEHHGHIDAAIFNLGYLPKGNKEIVTKPETTIKAINEIFDIL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
G+I +V+Y GH G+ E EA+ F ++ + ++Q +N + AP + + KR
Sbjct: 128 SIEGIIILVIYHGHEEGKIEKEALLEFLQNFDQNKAHILQYQFINQKNNAPFICAIEKR 186
>gi|408401107|ref|YP_006859070.1| SAM-dependent methyl transferase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|417927534|ref|ZP_12570922.1| putative rRNA methylase [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|340765408|gb|EGR87934.1| putative rRNA methylase [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|407967335|dbj|BAM60573.1| SAM-dependent methyl transferase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 184
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 93/179 (51%), Gaps = 16/179 (8%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+ K VVDAT GNG DT + + SA VY D+Q +A++ TS L A+
Sbjct: 16 VMDKSSVVVDATMGNGNDTAFLAQ------SAKKVYAFDVQEQAIRKTSERL------AQ 63
Query: 151 KGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
GL +L H +++ V + VR FNLGYLP DKSVIT TT +AL ++
Sbjct: 64 LGLSNAELILAGHESVDQYV--TEPVRAAIFNLGYLPSADKSVITLPATTLLALSKILKL 121
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG ++++VY GH GG E +A+ F R L +Q LN+ P + + ++
Sbjct: 122 LEVGGRVAIMVYYGHEGGDMEKDALLDFVRQLDQRLVSAMLYQPLNQVNTPPFLVMLEK 180
>gi|389857181|ref|YP_006359424.1| SAM-dependent methyltransferase [Streptococcus suis ST1]
gi|353740899|gb|AER21906.1| SAM-dependent methyltransferase [Streptococcus suis ST1]
Length = 184
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ ++ D VDAT GNG+DT+ + + AG V DIQ +AL +T+ L+
Sbjct: 8 AHAFLDEILTDQDLAVDATMGNGHDTVFLAQ------RAGKVVAFDIQEQALTTTAEKLE 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
K GL +L H +++ V A FNLGYLP DKSVIT TT A
Sbjct: 62 KA------GLTNTQLVLTGHENLDQYVENCKAA---IFNLGYLPSADKSVITLPATTLQA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
+E L+ GG +++++Y GH GG E +AV F R L + ++ LN+ P
Sbjct: 113 IEKVLDRLVVGGRLAIMIYYGHEGGALEKDAVLDFVRQLDQTVFTAMLYKPLNQVNTPPF 172
Query: 262 VFLFKR 267
+ + +R
Sbjct: 173 LVMVER 178
>gi|418625158|ref|ZP_13187814.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU125]
gi|374825659|gb|EHR89583.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU125]
Length = 187
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ V+DATCGNG DT + V + G VYG DIQ +A+ +T KT +
Sbjct: 18 INHNSIVIDATCGNGNDTAYFAQHVPN----GFVYGFDIQEQAILNTYK---KTKDYSN- 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + +P + FNLGYLP G+K ++T ETT MA+ IL
Sbjct: 70 --VKLIQSGHENAKLHIPAQHHGCIDAAIFNLGYLPKGNKEIVTKPETTIMAINEIFDIL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
G+I +V+Y GH G+ E EA+ F ++ + ++Q +N + AP + + KR
Sbjct: 128 SIEGIIILVIYHGHEEGKVEKEALLEFLQNFDQNKAHILQYQFINQKNNAPFICAIEKR 186
>gi|379021540|ref|YP_005298202.1| SAM-dependent methyltransferase, MraW methylasefamily
[Staphylococcus aureus subsp. aureus M013]
gi|359830849|gb|AEV78827.1| SAM-dependent methyltransferase, MraW methylasefamily
[Staphylococcus aureus subsp. aureus M013]
Length = 187
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H+ + VVDATCGNG DTL + A++ G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHITSES-IVVDATCGNGNDTLFL----AEQVPEGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL++T DK L+K H +E + + + A FNLGYLP GDKS+
Sbjct: 56 ALENTR---DKVKDFNHVSLIK---DGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A+ + ++ G+I +V+Y GH G+ E A+ + +L ++Q
Sbjct: 110 VTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLDQKHAQVLQYQ 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|168184845|ref|ZP_02619509.1| conserved hypothetical protein [Clostridium botulinum Bf]
gi|237793675|ref|YP_002861227.1| hypothetical protein CLJ_B0411 [Clostridium botulinum Ba4 str. 657]
gi|182672096|gb|EDT84057.1| conserved hypothetical protein [Clostridium botulinum Bf]
gi|229263450|gb|ACQ54483.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
Length = 188
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 89/168 (52%), Gaps = 9/168 (5%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
GD VD T G G+DT+++ +V ++ G V DIQ EA+ T L K K +
Sbjct: 24 GDIAVDCTLGKGHDTILLANLVGNK---GKVISFDIQKEAINKTKEKLRKFDYKN----I 76
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGL 214
L N H ++ + + V+L FNLGYLPG D ++ T +ETT AL+ A ++L G+
Sbjct: 77 TLINDGHENLDRHIQEK--VKLFIFNLGYLPGKDHNITTKAETTLKALKKALKLLDDNGI 134
Query: 215 ISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
+ +V+Y GH G+EE A+E F L + K +N+ P L+
Sbjct: 135 VLLVIYYGHENGKEEKAALEKFTSKLDQKVYNVMKNSFINQANNPPLL 182
>gi|418950410|ref|ZP_13502587.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-160]
gi|375377085|gb|EHS80579.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-160]
Length = 187
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H+ + VVDATCGNG DTL + A++ G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHITSES-IVVDATCGNGNDTLFL----AEQVPEGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL++T DK L+K H +E + + + A FNLGYLP GDKS+
Sbjct: 56 ALENTR---DKVKDFNHVSLIK---DGHENIEHHINDAHKGHIDATIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A+ + ++ G+I +V+Y GH G+ E A+ + +L ++Q
Sbjct: 110 VTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLDQKHAQVLQYQ 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|332522836|ref|ZP_08399088.1| putative rRNA methylase [Streptococcus porcinus str. Jelinkova 176]
gi|332314100|gb|EGJ27085.1| putative rRNA methylase [Streptococcus porcinus str. Jelinkova 176]
Length = 182
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 90/170 (52%), Gaps = 13/170 (7%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157
+VDAT GNG DTL V +Y D+Q +AL+ T L KA+ V+L
Sbjct: 22 LVDATMGNGNDTLYFAPKVK------RLYAFDVQEKALQVTREKL----QKAQLENVQLI 71
Query: 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217
H ++++ + + A FNLGYLP DKS++T +ETT AL+ R L GG I++
Sbjct: 72 QDGHEKVDDYLDQVDAA---IFNLGYLPNADKSIVTRAETTIEALKKLLRALRVGGRIAI 128
Query: 218 VVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+VY GH GGR+E +A+ + L + +Q LN+ P + + ++
Sbjct: 129 MVYYGHEGGRKEKDALLDYLSQLPQEKVAVMSYQALNQKNCPPFLLMLEK 178
>gi|251781840|ref|YP_002996142.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|386316367|ref|YP_006012531.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410494155|ref|YP_006904001.1| hypothetical protein SDSE_0445 [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417753441|ref|ZP_12401566.1| putative rRNA methylase [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|242390469|dbj|BAH80928.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|323126654|gb|ADX23951.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333770199|gb|EGL47254.1| putative rRNA methylase [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|410439315|emb|CCI61943.1| K00614 [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
Length = 184
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 93/179 (51%), Gaps = 16/179 (8%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+ K VVDAT GNG DT + + SA VY D+Q +A++ TS L A+
Sbjct: 16 VMDKSSVVVDATMGNGNDTAFLAQ------SAKKVYAFDVQEQAIRKTSERL------AQ 63
Query: 151 KGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
GL +L H +++ V + VR FNLGYLP DKSVIT TT +AL ++
Sbjct: 64 LGLSNAELILAGHEAVDQYV--TEPVRAAIFNLGYLPSADKSVITLPATTLLALSKILKL 121
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG ++++VY GH GG E +A+ F R L +Q LN+ P + + ++
Sbjct: 122 LEVGGRVAIMVYYGHEGGDMEKDALLDFVRQLDQRLVSAMLYQPLNQVNTPPFLVMLEK 180
>gi|253579059|ref|ZP_04856330.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850002|gb|EES77961.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 187
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 7/177 (3%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V++GD +DAT GNG DTL++ ++ + +G V DIQ +AL +T L+
Sbjct: 15 RQQVQEGDFCIDATMGNGNDTLLLSQLCGE---SGKVLAFDIQEQALTATQKRLNAGHVP 71
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
+L H+ M E + V + FN GYLPGGD S+ T +T+ AL A +
Sbjct: 72 EN---YRLLLESHANMAEYATPDS-VSCIVFNFGYLPGGDHSLATRGKTSIQALTQALTL 127
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
L GG+IS+ +Y G G EE + + + ++L ++ K + NRP P + L
Sbjct: 128 LKKGGMISLCIYSGGDSGFEERDQILDWLKNLDPHQYLVIKSEYYNRPNNPPIPVLI 184
>gi|229916468|ref|YP_002885114.1| rRNA methylase [Exiguobacterium sp. AT1b]
gi|229467897|gb|ACQ69669.1| putative rRNA methylase [Exiguobacterium sp. AT1b]
Length = 190
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ +G +D T GNG+DTL + V + G VY DIQSEA+ +T + ++++
Sbjct: 18 IEEGQVAIDMTAGNGHDTLFLANAVGE---TGHVYAFDIQSEAVAATKARVEESGVSNR- 73
Query: 152 GLVKLFNMCHSRMEEIVPKSTA-VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V + + H ++ +V K + FNLGYLPG DKS+ T TT AL ++
Sbjct: 74 --VTVIHDSHDTVQAVVEKEARPITAAVFNLGYLPGSDKSITTHGNTTIAALSQLLDVMA 131
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFKR 267
GG+I +V+Y GH G+ E + V + SL ++ +N+ P +V + KR
Sbjct: 132 VGGVIVIVIYHGHESGKVERDEVLRYVESLDQKQAGVLRYGFINQVNHPPFIVAIEKR 189
>gi|94986639|ref|YP_594572.1| SAM-dependent methyltransferases [Lawsonia intracellularis
PHE/MN1-00]
gi|442555458|ref|YP_007365283.1| SAM-dependent methyltransferase [Lawsonia intracellularis N343]
gi|94730888|emb|CAJ54251.1| SAM-dependent methyltransferases [Lawsonia intracellularis
PHE/MN1-00]
gi|441492905|gb|AGC49599.1| SAM-dependent methyltransferase [Lawsonia intracellularis N343]
Length = 215
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 94/183 (51%), Gaps = 17/183 (9%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST-----SSLLDKTTSKAEKGL 153
+DAT GNGYDT + ++ + G V DIQ EA+ +T S L++ + + G
Sbjct: 33 IDATAGNGYDTCFLAQLAG---TQGIVLAFDIQQEAITNTYQRLISLHLEQQVTLIKSGH 89
Query: 154 VKL------FNMCHSRMEEIVPKSTAVRL---VAFNLGYLPGGDKSVITTSETTKMALEA 204
+L F ++ + E + + + V FNLG+LP DK ++T TT MAL
Sbjct: 90 ERLYAETLNFFQKNTHLVEFYHFNNQIDICSGVMFNLGFLPKSDKKIVTQPTTTIMALNN 149
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
A +L PGG+I++ Y GH GG EE EAV ++ LS++ W ++ + + + L
Sbjct: 150 ALNVLAPGGIITIHCYTGHLGGVEESEAVLYWSEQLSLNKWDITIYKQIFKQKNNEQLVL 209
Query: 265 FKR 267
KR
Sbjct: 210 IKR 212
>gi|289550483|ref|YP_003471387.1| SAM-dependent methyltransferase, MraW methylase family
[Staphylococcus lugdunensis HKU09-01]
gi|315657973|ref|ZP_07910847.1| rRNA methyltransferase [Staphylococcus lugdunensis M23590]
gi|385784113|ref|YP_005760286.1| hypothetical protein SLUG_11670 [Staphylococcus lugdunensis
N920143]
gi|418413789|ref|ZP_12987005.1| hypothetical protein HMPREF9308_00170 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418636626|ref|ZP_13198972.1| MraW methylase-like family protein [Staphylococcus lugdunensis
VCU139]
gi|289180015|gb|ADC87260.1| SAM-dependent methyltransferase, MraW methylase family
[Staphylococcus lugdunensis HKU09-01]
gi|315497009|gb|EFU85330.1| rRNA methyltransferase [Staphylococcus lugdunensis M23590]
gi|339894369|emb|CCB53643.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
gi|374840681|gb|EHS04166.1| MraW methylase-like family protein [Staphylococcus lugdunensis
VCU139]
gi|410877427|gb|EKS25319.1| hypothetical protein HMPREF9308_00170 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 187
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + +LIT H+ + V+DATCGNG+DTL + + V G VYG DIQ +
Sbjct: 8 PFAKSLIT-------SHI-QSDSIVIDATCGNGFDTLFLAQHVP----KGHVYGFDIQQQ 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
A+ +T+ + K+ K V L + H + + + + ++ A FNLGYLP GDKS+
Sbjct: 56 AIDNTAKKI-----KSFKN-VSLIHDSHEYISDHLISAHKNKITAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T E+T A++A L G+I +V+Y GH G+ E +A+ + ++ ++Q
Sbjct: 110 VTQPESTIRAIDAIFEQLTIEGIIVVVIYHGHFQGKLERDALLDYFSNIDQTKAQVLQYQ 169
Query: 252 MLN-RPLAPVL 261
+N R AP +
Sbjct: 170 FINQRNDAPFI 180
>gi|422870331|ref|ZP_16916824.1| rRNA methylase [Streptococcus sanguinis SK1087]
gi|328946868|gb|EGG41005.1| rRNA methylase [Streptococcus sanguinis SK1087]
Length = 183
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 91/184 (49%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ VV K D VVDAT GNG+DTL + K+ A VY DIQ +A++ T L
Sbjct: 8 AHAFLAEVVTKEDIVVDATMGNGHDTLFLAKL------AKQVYAFDIQEQAVEKTRQRL- 60
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+KA +L H +++ A FNLGYLP DKSVIT TT AL
Sbjct: 61 ---AKAGLDNAQLILAGHETLDQYTDHFKAA---IFNLGYLPSADKSVITRPATTLEALG 114
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
+ L GG ++++Y GH GG E +AV F L D+ ++ +N+ P +
Sbjct: 115 KVCQGLEKGGRAAIMIYYGHEGGEVEKDAVLDFVSQLPQQDFTVALYKTINQINNPPFLV 174
Query: 264 LFKR 267
+ ++
Sbjct: 175 MIEK 178
>gi|261364723|ref|ZP_05977606.1| putative rRNA methylase [Neisseria mucosa ATCC 25996]
gi|288567020|gb|EFC88580.1| putative rRNA methylase [Neisseria mucosa ATCC 25996]
Length = 189
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 99/186 (53%), Gaps = 12/186 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + K ++ +D T GNG DTLM+ + + S G V+ D+Q +AL +T L+
Sbjct: 10 AHALLKQALKPDARALDGTAGNGNDTLMLARSI---GSGGKVWAFDVQEQALANTRMRLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ A++ V+L H + + P AV FN G+LPGGDKS T + T+ A
Sbjct: 67 EA-GMADR--VELILDGHENLATHIREPLDAAV----FNFGWLPGGDKSCTTEAATSIRA 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
L +A +L GG+ V+Y GH G+ E +A+E +A+ L D++ ++ +NR P
Sbjct: 120 LTSALSLLKTGGVAVAVLYPGHEAGQHEAQAIEDWAQRLPQDEFAVLRYGFINRRNCPPY 179
Query: 262 VFLFKR 267
+ F++
Sbjct: 180 LLAFEK 185
>gi|421562974|ref|ZP_16008796.1| putative rRNA methyltransferase [Neisseria meningitidis NM2795]
gi|421906546|ref|ZP_16336439.1| hypothetical protein BN21_0344 [Neisseria meningitidis alpha704]
gi|393292294|emb|CCI72379.1| hypothetical protein BN21_0344 [Neisseria meningitidis alpha704]
gi|402341681|gb|EJU76854.1| putative rRNA methyltransferase [Neisseria meningitidis NM2795]
Length = 188
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 9/174 (5%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
+G +D T GNG+DTL + + G V+ DIQ +AL T L + +
Sbjct: 20 EGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALSRTRCRLKEARYEN---- 72
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
V+L H +++ V S + FN G+LPGGDKS+ T +ET+ AL A +L G
Sbjct: 73 VQLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTHTETSIPALCATLSLLKESG 130
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
++ V+Y GH G++E EA+E +A++L + + ++ NR P + F++
Sbjct: 131 MLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLRYGFTNRKNNPPYLLAFEK 184
>gi|171780242|ref|ZP_02921146.1| hypothetical protein STRINF_02030 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281590|gb|EDT47025.1| putative rRNA methylase [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 182
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 96/179 (53%), Gaps = 16/179 (8%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT-SKA 149
V+ G VDAT GNG DT + + A VY D+Q +ALKST L+K S A
Sbjct: 16 VLDDGAVAVDATMGNGNDTAFLAQ------HAKKVYAFDVQEQALKSTQERLEKQAISNA 69
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA-ERI 208
+ L H +++ V S +R FNLGYLP DK+VIT +TT +A+E ER+
Sbjct: 70 Q-----LILDGHQNLDKYV--SEPIRAAIFNLGYLPSADKTVITKPDTTLVAIEKILERL 122
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
I GG +++++Y GH GG E +AV + +L ++ ++ LN+ P + + ++
Sbjct: 123 EI-GGRLAIMIYYGHEGGDMEKDAVLDYVSALDQKEFATMLYKPLNKIHQPPFLVMIEK 180
>gi|167772608|ref|ZP_02444661.1| hypothetical protein ANACOL_03987 [Anaerotruncus colihominis DSM
17241]
gi|167665086|gb|EDS09216.1| putative rRNA methylase [Anaerotruncus colihominis DSM 17241]
Length = 190
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 10/181 (5%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
+ +A + + +HV + GD +DAT G G+DT + +V +G V DIQ EA+ ST+
Sbjct: 9 LQVAHDFIARHV-KPGDFCIDATAGRGHDTAFLCSLVG---GSGHVLAFDIQQEAVDSTT 64
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSRMEEIV-PKSTAVRLVAFNLGYLPGGDKSVITTSETT 198
LL ++ G+ + H+ M P+S V + FN G+LPGGD S+ T +E++
Sbjct: 65 ELLH---TRGFAGIGRAVLDSHANMAAYAAPES--VSCITFNFGWLPGGDHSINTRAESS 119
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
A+EA R+L P G++S+ +Y G G E +A+ + +++ + Q NRP
Sbjct: 120 IAAIEAGLRLLKPRGVMSLCIYYGRDTGFAERDALMDYFKTIDHRAFTVITAQFANRPNC 179
Query: 259 P 259
P
Sbjct: 180 P 180
>gi|160943569|ref|ZP_02090802.1| hypothetical protein FAEPRAM212_01062 [Faecalibacterium prausnitzii
M21/2]
gi|158445248|gb|EDP22251.1| acetyltransferase, GNAT family [Faecalibacterium prausnitzii M21/2]
Length = 328
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 8/154 (5%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VDATCGNG DT + + A AG V D+Q EA++ST + L+K AE+ +L
Sbjct: 165 VDATCGNGGDTAFLCGLTA---PAGRVLAFDVQPEAIRSTRARLEKANVPAER--YELIC 219
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H+ + + V TA V FN G+LPG D +V +T++++ AL+AA + + PGG++S +
Sbjct: 220 GSHADLLQYVQPGTA-DAVMFNFGWLPGADHAVFSTAQSSIPALQAALQAVRPGGIVSAI 278
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDW--ICCKF 250
+Y G G +E +AV F R+L + + + C F
Sbjct: 279 LYSGAVIGSDEKQAVLRFLRALPLKSFTVLVCDF 312
>gi|345022153|ref|ZP_08785766.1| hypothetical protein OTW25_12646 [Ornithinibacillus scapharcae
TW25]
Length = 188
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 9/186 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + V+ G+TV+DATCGNG DTL + K+V + G V DIQ +A+ +T LL
Sbjct: 8 SHHLLEEVIFSGETVIDATCGNGNDTLFLSKLVGE---TGEVIAFDIQEQAIDNTDQLLI 64
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETTKMA 201
+ V L H+ ++ + K ++ FNLGYLP DK++IT E+T A
Sbjct: 65 EHNCSN----VSLVLDSHANIKNYLSKDLEGKIGGAIFNLGYLPKSDKTIITKGESTIEA 120
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
++ + L G I +VVY GH GG E + SL + ++ +N+ + L
Sbjct: 121 IDTILQFLKENGRIILVVYYGHEGGELEKNTILKHVISLDQKKYSVLQYGFINQKIIHHL 180
Query: 262 VFLFKR 267
+ + +
Sbjct: 181 LLPYTK 186
>gi|386831358|ref|YP_006238012.1| hypothetical protein SAEMRSA15_16690 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417799891|ref|ZP_12447023.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21310]
gi|418656604|ref|ZP_13218407.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-105]
gi|448745318|ref|ZP_21727177.1| putative rRNA methylase [Staphylococcus aureus KT/Y21]
gi|334272423|gb|EGL90788.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21310]
gi|375033136|gb|EHS26345.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-105]
gi|385196750|emb|CCG16380.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|445561378|gb|ELY17583.1| putative rRNA methylase [Staphylococcus aureus KT/Y21]
Length = 187
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H+ + VVDATCGNG DTL + A++ G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHITPES-IVVDATCGNGNDTLFL----AEQVPEGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL++T DK L+K H +E + + + A FNLGYLP GDKS+
Sbjct: 56 ALENTR---DKVKDFNHVSLIK---DGHENIEHHINDTHKGHIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A+ + ++ G+I +V+Y GH G+ E A+ + +L ++Q
Sbjct: 110 VTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLDQKHAQVLQYQ 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|294055726|ref|YP_003549384.1| putative rRNA methylase [Coraliomargarita akajimensis DSM 45221]
gi|293615059|gb|ADE55214.1| putative rRNA methylase [Coraliomargarita akajimensis DSM 45221]
Length = 183
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 104/189 (55%), Gaps = 10/189 (5%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
+T A+ + ++ GD +DAT GNG+DTL + ++V G V +DIQ++A++ST
Sbjct: 3 LTERAHQTLEQLLSPGDLAIDATAGNGHDTLKLAQLVG---PTGKVMAIDIQAQAIESTR 59
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSR-MEEIVPKSTA-VRLVAFNLGYLPGGDKSVITTSET 197
L S A V+L H+ + ++V +R + FNLGYLPG DKSV T+ +
Sbjct: 60 ERL----SAAGLQNVELIQQDHATALRQLVDSYRGNIRAITFNLGYLPGSDKSVQTSENS 115
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
T AL+A+ ++L G + + Y GH GG++E AVE + + + C + +++ +
Sbjct: 116 TLPALDASLQLLSATGKLFITAYRGHDGGQQEATAVEKWIQQQNRTTE-CFEPKIIGDRI 174
Query: 258 APVLVFLFK 266
P+L L K
Sbjct: 175 PPILWVLSK 183
>gi|15924753|ref|NP_372287.1| hypothetical protein SAV1763 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927338|ref|NP_374871.1| hypothetical protein SA1582 [Staphylococcus aureus subsp. aureus
N315]
gi|21283433|ref|NP_646521.1| hypothetical protein MW1704 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486586|ref|YP_043807.1| hypothetical protein SAS1687 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57652059|ref|YP_186644.1| hypothetical protein SACOL1811 [Staphylococcus aureus subsp. aureus
COL]
gi|87161375|ref|YP_494401.1| hypothetical protein SAUSA300_1707 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88195575|ref|YP_500381.1| hypothetical protein SAOUHSC_01878 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148268239|ref|YP_001247182.1| hypothetical protein SaurJH9_1816 [Staphylococcus aureus subsp.
aureus JH9]
gi|150394307|ref|YP_001316982.1| hypothetical protein SaurJH1_1851 [Staphylococcus aureus subsp.
aureus JH1]
gi|151221866|ref|YP_001332688.1| hypothetical protein NWMN_1654 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156980080|ref|YP_001442339.1| hypothetical protein SAHV_1749 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509979|ref|YP_001575638.1| hypothetical protein USA300HOU_1752 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221141483|ref|ZP_03565976.1| hypothetical protein SauraJ_07563 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253315864|ref|ZP_04839077.1| hypothetical protein SauraC_06907 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253732414|ref|ZP_04866579.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253734455|ref|ZP_04868620.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
gi|255006549|ref|ZP_05145150.2| hypothetical protein SauraM_08770 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257794144|ref|ZP_05643123.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|258415848|ref|ZP_05682119.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|258420677|ref|ZP_05683616.1| conserved hypothetical protein [Staphylococcus aureus A9719]
gi|258443785|ref|ZP_05692124.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|258445996|ref|ZP_05694172.1| conserved hypothetical protein [Staphylococcus aureus A6300]
gi|258448276|ref|ZP_05696403.1| conserved hypothetical protein [Staphylococcus aureus A6224]
gi|258452312|ref|ZP_05700325.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|258454196|ref|ZP_05702167.1| conserved hypothetical protein [Staphylococcus aureus A5937]
gi|262049070|ref|ZP_06021948.1| hypothetical protein SAD30_2275 [Staphylococcus aureus D30]
gi|262053062|ref|ZP_06025235.1| hypothetical protein SA930_1119 [Staphylococcus aureus 930918-3]
gi|269203399|ref|YP_003282668.1| hypothetical protein SAAV_1772 [Staphylococcus aureus subsp. aureus
ED98]
gi|282893255|ref|ZP_06301489.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A8117]
gi|282925648|ref|ZP_06333297.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A9765]
gi|282927890|ref|ZP_06335501.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus
A10102]
gi|284024808|ref|ZP_06379206.1| hypothetical protein Saura13_09455 [Staphylococcus aureus subsp.
aureus 132]
gi|294849922|ref|ZP_06790661.1| mraW [Staphylococcus aureus A9754]
gi|295406072|ref|ZP_06815880.1| mraW [Staphylococcus aureus A8819]
gi|296276045|ref|ZP_06858552.1| hypothetical protein SauraMR_06837 [Staphylococcus aureus subsp.
aureus MR1]
gi|297207524|ref|ZP_06923960.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297245003|ref|ZP_06928880.1| mraW [Staphylococcus aureus A8796]
gi|300911608|ref|ZP_07129052.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
gi|304380644|ref|ZP_07363315.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|379014960|ref|YP_005291196.1| hypothetical protein SAVC_08015 [Staphylococcus aureus subsp.
aureus VC40]
gi|384547980|ref|YP_005737233.1| hypothetical protein SAOV_1747 [Staphylococcus aureus subsp. aureus
ED133]
gi|384550576|ref|YP_005739828.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
JKD6159]
gi|384862359|ref|YP_005745079.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|384864972|ref|YP_005750331.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|384870302|ref|YP_005753016.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus T0131]
gi|385782035|ref|YP_005758206.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
11819-97]
gi|387143356|ref|YP_005731749.1| hypothetical protein SATW20_17510 [Staphylococcus aureus subsp.
aureus TW20]
gi|387150904|ref|YP_005742468.1| SAM-dependent methyltransferase, MraW methylase family
[Staphylococcus aureus 04-02981]
gi|387780836|ref|YP_005755634.1| hypothetical protein SARLGA251_16510 [Staphylococcus aureus subsp.
aureus LGA251]
gi|415688132|ref|ZP_11451899.1| hypothetical protein CGSSa01_01071 [Staphylococcus aureus subsp.
aureus CGS01]
gi|415691771|ref|ZP_11453861.1| hypothetical protein CGSSa03_10160 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417649610|ref|ZP_12299407.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21189]
gi|417651177|ref|ZP_12300940.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21172]
gi|417653539|ref|ZP_12303270.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21193]
gi|417796392|ref|ZP_12443604.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21305]
gi|417801078|ref|ZP_12448179.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21318]
gi|417892833|ref|ZP_12536873.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21201]
gi|417899229|ref|ZP_12543136.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21259]
gi|417901171|ref|ZP_12545048.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21266]
gi|417903883|ref|ZP_12547716.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21269]
gi|418284958|ref|ZP_12897659.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21209]
gi|418313844|ref|ZP_12925328.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21334]
gi|418316812|ref|ZP_12928243.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21340]
gi|418318858|ref|ZP_12930249.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21232]
gi|418321296|ref|ZP_12932642.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus VCU006]
gi|418424939|ref|ZP_12998050.1| hypothetical protein MQA_01805 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418427894|ref|ZP_13000897.1| hypothetical protein MQC_01845 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418430735|ref|ZP_13003644.1| hypothetical protein MQE_00401 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418434363|ref|ZP_13006475.1| hypothetical protein MQG_00305 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418437378|ref|ZP_13009171.1| hypothetical protein MQI_01680 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418440273|ref|ZP_13011972.1| hypothetical protein MQK_00820 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418443291|ref|ZP_13014889.1| hypothetical protein MQM_00923 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418446359|ref|ZP_13017829.1| hypothetical protein MQO_01908 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418449378|ref|ZP_13020759.1| hypothetical protein MQQ_01934 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418452180|ref|ZP_13023513.1| hypothetical protein MQS_01573 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418455179|ref|ZP_13026436.1| hypothetical protein MQU_01496 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418458055|ref|ZP_13029253.1| hypothetical protein MQW_01091 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418562419|ref|ZP_13126876.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21262]
gi|418567147|ref|ZP_13131512.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21272]
gi|418571685|ref|ZP_13135910.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21283]
gi|418572429|ref|ZP_13136640.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21333]
gi|418579682|ref|ZP_13143776.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418600074|ref|ZP_13163545.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21343]
gi|418638588|ref|ZP_13200876.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-3]
gi|418642009|ref|ZP_13204212.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-24]
gi|418645915|ref|ZP_13208032.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-55]
gi|418647090|ref|ZP_13209170.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-88]
gi|418651119|ref|ZP_13213129.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-91]
gi|418652677|ref|ZP_13214641.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-99]
gi|418659680|ref|ZP_13221341.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-111]
gi|418661693|ref|ZP_13223268.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-122]
gi|418871199|ref|ZP_13425585.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-125]
gi|418875691|ref|ZP_13429947.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418878683|ref|ZP_13432917.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881451|ref|ZP_13435667.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884267|ref|ZP_13438459.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418887017|ref|ZP_13441164.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418895528|ref|ZP_13449622.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418904022|ref|ZP_13458063.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418906699|ref|ZP_13460724.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418912387|ref|ZP_13466367.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG547]
gi|418920790|ref|ZP_13474721.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIGC348]
gi|418926011|ref|ZP_13479913.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418929104|ref|ZP_13482990.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418932079|ref|ZP_13485913.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418934720|ref|ZP_13488542.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418948471|ref|ZP_13500771.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-157]
gi|418953845|ref|ZP_13505830.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-189]
gi|418988817|ref|ZP_13536489.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418991697|ref|ZP_13539357.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1096]
gi|419773451|ref|ZP_14299457.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus CO-23]
gi|419786301|ref|ZP_14312037.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-M]
gi|421148363|ref|ZP_15608023.1| hypothetical protein Newbould305_0122 [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|422742929|ref|ZP_16796928.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|422745906|ref|ZP_16799842.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus
MRSA131]
gi|424776605|ref|ZP_18203585.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus CM05]
gi|424785647|ref|ZP_18212448.1| SAM-dependent methyltransferase [Staphylococcus aureus CN79]
gi|440705807|ref|ZP_20886565.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21282]
gi|440735201|ref|ZP_20914811.1| hypothetical protein SASA_12110 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443636083|ref|ZP_21120201.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21236]
gi|443638529|ref|ZP_21122568.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21196]
gi|448742479|ref|ZP_21724421.1| putative rRNA methylase [Staphylococcus aureus KT/314250]
gi|13701557|dbj|BAB42850.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247535|dbj|BAB57925.1| similar to SAM-dependent methyltransferase [Staphylococcus aureus
subsp. aureus Mu50]
gi|21204874|dbj|BAB95569.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49245029|emb|CAG43490.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57286245|gb|AAW38339.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
COL]
gi|87127349|gb|ABD21863.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203133|gb|ABD30943.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147741308|gb|ABQ49606.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus JH9]
gi|149946759|gb|ABR52695.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus JH1]
gi|150374666|dbj|BAF67926.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156722215|dbj|BAF78632.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368788|gb|ABX29759.1| hypothetical protein USA300HOU_1752 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253723804|gb|EES92533.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253727509|gb|EES96238.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
gi|257788116|gb|EEV26456.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|257839441|gb|EEV63914.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|257843281|gb|EEV67691.1| conserved hypothetical protein [Staphylococcus aureus A9719]
gi|257851191|gb|EEV75134.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|257855238|gb|EEV78177.1| conserved hypothetical protein [Staphylococcus aureus A6300]
gi|257858515|gb|EEV81391.1| conserved hypothetical protein [Staphylococcus aureus A6224]
gi|257860037|gb|EEV82872.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|257863648|gb|EEV86405.1| conserved hypothetical protein [Staphylococcus aureus A5937]
gi|259159039|gb|EEW44110.1| hypothetical protein SA930_1119 [Staphylococcus aureus 930918-3]
gi|259162887|gb|EEW47451.1| hypothetical protein SAD30_2275 [Staphylococcus aureus D30]
gi|262075689|gb|ACY11662.1| hypothetical protein SAAV_1772 [Staphylococcus aureus subsp. aureus
ED98]
gi|269941239|emb|CBI49627.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282590400|gb|EFB95479.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus
A10102]
gi|282592428|gb|EFB97442.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A9765]
gi|282764573|gb|EFC04699.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A8117]
gi|285817443|gb|ADC37930.1| SAM-dependent methyltransferase, MraW methylase family
[Staphylococcus aureus 04-02981]
gi|294823261|gb|EFG39691.1| mraW [Staphylococcus aureus A9754]
gi|294969069|gb|EFG45090.1| mraW [Staphylococcus aureus A8819]
gi|296887860|gb|EFH26757.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297178083|gb|EFH37331.1| mraW [Staphylococcus aureus A8796]
gi|298695029|gb|ADI98251.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ED133]
gi|300887029|gb|EFK82230.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
gi|302333425|gb|ADL23618.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302751588|gb|ADL65765.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|304340751|gb|EFM06680.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|312830139|emb|CBX34981.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315130599|gb|EFT86585.1| hypothetical protein CGSSa03_10160 [Staphylococcus aureus subsp.
aureus CGS03]
gi|315197231|gb|EFU27570.1| hypothetical protein CGSSa01_01071 [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140772|gb|EFW32623.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320143789|gb|EFW35563.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|329314437|gb|AEB88850.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus T0131]
gi|329727003|gb|EGG63460.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21189]
gi|329727361|gb|EGG63817.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21172]
gi|329733230|gb|EGG69567.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21193]
gi|334269330|gb|EGL87751.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21305]
gi|334277402|gb|EGL95633.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21318]
gi|341846033|gb|EGS87231.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21259]
gi|341846330|gb|EGS87527.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21266]
gi|341848744|gb|EGS89903.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21269]
gi|341856721|gb|EGS97550.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21201]
gi|344177938|emb|CCC88418.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|364523024|gb|AEW65774.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
11819-97]
gi|365172088|gb|EHM62831.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21209]
gi|365225528|gb|EHM66771.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus VCU006]
gi|365234877|gb|EHM75800.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21334]
gi|365240213|gb|EHM80995.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21340]
gi|365241982|gb|EHM82712.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21232]
gi|371973523|gb|EHO90871.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21262]
gi|371979271|gb|EHO96505.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21283]
gi|371982851|gb|EHO99999.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21272]
gi|371984482|gb|EHP01594.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21333]
gi|374363657|gb|AEZ37762.1| hypothetical protein SAVC_08015 [Staphylococcus aureus subsp.
aureus VC40]
gi|374395230|gb|EHQ66500.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21343]
gi|375017942|gb|EHS11538.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-24]
gi|375021156|gb|EHS14661.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-3]
gi|375021247|gb|EHS14751.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-99]
gi|375022221|gb|EHS15708.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-55]
gi|375026495|gb|EHS19876.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-91]
gi|375031109|gb|EHS24399.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-88]
gi|375034573|gb|EHS27732.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-111]
gi|375038331|gb|EHS31321.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-122]
gi|375368919|gb|EHS72814.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-125]
gi|375372114|gb|EHS75868.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-157]
gi|375374204|gb|EHS77844.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-189]
gi|377693569|gb|EHT17939.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377693970|gb|EHT18338.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377695298|gb|EHT19661.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377712475|gb|EHT36692.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377714094|gb|EHT38298.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377717910|gb|EHT42085.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377721833|gb|EHT45962.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377722041|gb|EHT46169.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG547]
gi|377724519|gb|EHT48635.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377730792|gb|EHT54858.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377739016|gb|EHT63025.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377743037|gb|EHT67022.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377745080|gb|EHT69057.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377762604|gb|EHT86466.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377763645|gb|EHT87500.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377769763|gb|EHT93531.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIGC93]
gi|377770814|gb|EHT94575.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIGC128]
gi|383360800|gb|EID38191.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus IS-M]
gi|383972748|gb|EID88774.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus CO-23]
gi|387717581|gb|EIK05584.1| hypothetical protein MQC_01845 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387717875|gb|EIK05873.1| hypothetical protein MQE_00401 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387718520|gb|EIK06481.1| hypothetical protein MQA_01805 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387724696|gb|EIK12345.1| hypothetical protein MQG_00305 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387726559|gb|EIK14108.1| hypothetical protein MQI_01680 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387729814|gb|EIK17232.1| hypothetical protein MQK_00820 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387734247|gb|EIK21402.1| hypothetical protein MQO_01908 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387736088|gb|EIK23193.1| hypothetical protein MQQ_01934 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387736364|gb|EIK23460.1| hypothetical protein MQM_00923 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387744109|gb|EIK30881.1| hypothetical protein MQU_01496 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387744318|gb|EIK31088.1| hypothetical protein MQS_01573 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387746176|gb|EIK32910.1| hypothetical protein MQW_01091 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|394331506|gb|EJE57589.1| hypothetical protein Newbould305_0122 [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|402346594|gb|EJU81674.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus CM05]
gi|421956143|gb|EKU08473.1| SAM-dependent methyltransferase [Staphylococcus aureus CN79]
gi|436430950|gb|ELP28305.1| hypothetical protein SASA_12110 [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436507789|gb|ELP43443.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21282]
gi|443408592|gb|ELS67111.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21236]
gi|443409038|gb|ELS67543.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21196]
gi|445546784|gb|ELY15068.1| putative rRNA methylase [Staphylococcus aureus KT/314250]
Length = 187
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H+ + VVDATCGNG DTL + A++ G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHITPES-IVVDATCGNGNDTLFL----AEQVPEGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL++T DK L+K H +E + + + A FNLGYLP GDKS+
Sbjct: 56 ALENTR---DKVKDFNHVSLIK---DGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A+ + ++ G+I +V+Y GH G+ E A+ + +L ++Q
Sbjct: 110 VTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLDQKHAQVLQYQ 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|387816587|ref|YP_005676931.1| sam-dependent methyltransferase, MraW methylase family [Clostridium
botulinum H04402 065]
gi|322804628|emb|CBZ02180.1| sam-dependent methyltransferase, MraW methylase family [Clostridium
botulinum H04402 065]
Length = 188
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 97/179 (54%), Gaps = 9/179 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + ++ ++ GD VD T G G+DT+++ +V ++ G V DIQ EA+ T L
Sbjct: 13 AKYICENTLKFGDIAVDCTLGKGHDTVLLANLVGNK---GKVISFDIQKEAINKTREKLR 69
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ K + L N H ++++ + + V+L FNLGYLPG D +V T +ETT AL+
Sbjct: 70 EFDYKN----ITLINDGHEKLDKHIQEK--VKLFIFNLGYLPGKDHNVTTKAETTLKALK 123
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
A ++L G++ +V+Y GH G+EE A+E F L + K +N+ P L+
Sbjct: 124 KALKLLDDNGIVLLVIYYGHENGKEEKAALEKFTSELDQKVYNVMKNSFINQANNPPLL 182
>gi|89099660|ref|ZP_01172534.1| hypothetical protein B14911_24130 [Bacillus sp. NRRL B-14911]
gi|89085603|gb|EAR64730.1| hypothetical protein B14911_24130 [Bacillus sp. NRRL B-14911]
Length = 190
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 8/186 (4%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + V GD VVDAT GNG+D L + +V G VYG DIQ +A+ ++ L
Sbjct: 10 ARTILEKAVSPGDIVVDATLGNGHDALYLANLVGPN---GRVYGFDIQEQAIHNSRIRL- 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMA 201
+ + LF+ H ++ E +P ++ A FNLGYLPG DK+V+T TT A
Sbjct: 66 --SGHGMEERATLFHSGHEQLLECIPPVHHKKIAAAIFNLGYLPGSDKTVVTRPRTTISA 123
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
+E ++ +I +V+Y GH G E + + + +++ + ++Q +N+ P
Sbjct: 124 IEQLLEVMPAEAVIVLVIYHGHFEGAVERDYLLRYVKTIEQERAHVLQYQFINQANKPPF 183
Query: 262 VFLFKR 267
+ ++
Sbjct: 184 IIAIEK 189
>gi|418914854|ref|ZP_13468824.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377755510|gb|EHT79409.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
CIGC340D]
Length = 187
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H+ + VVDATCGNG DTL + A++ G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHITPES-IVVDATCGNGNDTLFL----AEQVPEGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL++T DK L+K H +E + + + A FNLGYLP GDKS+
Sbjct: 56 ALENTR---DKVKDFNHVSLIK---DGHENIEHHINDAHKGHIDASIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A+ + ++ G+I +V+Y GH G+ E A+ + +L ++Q
Sbjct: 110 VTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLDQKHAQVLQYQ 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|320547357|ref|ZP_08041648.1| rRNA methylase [Streptococcus equinus ATCC 9812]
gi|320448055|gb|EFW88807.1| rRNA methylase [Streptococcus equinus ATCC 9812]
Length = 182
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 96/179 (53%), Gaps = 16/179 (8%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT-SKA 149
V+ G VDAT GNG DT + + A VY D+Q +ALKST L+K S A
Sbjct: 16 VLDDGAVAVDATMGNGNDTAFLAQ------HAKKVYAFDVQEQALKSTQERLEKQAISNA 69
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA-ERI 208
+ L H +++ V S +R FNLGYLP DK+VIT +TT +A+E ER+
Sbjct: 70 Q-----LILDGHQNLDKYV--SEPIRAAIFNLGYLPSADKTVITKPDTTLVAIEKILERL 122
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
I GG +++++Y GH GG E +AV + +L ++ ++ LN+ P + + ++
Sbjct: 123 EI-GGRLAIMIYYGHEGGDMEKDAVLDYVSALDQKEFATMLYKPLNQIHQPPFLVMIEK 180
>gi|329769326|ref|ZP_08260742.1| hypothetical protein HMPREF0433_00506 [Gemella sanguinis M325]
gi|328839129|gb|EGF88714.1| hypothetical protein HMPREF0433_00506 [Gemella sanguinis M325]
Length = 189
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 11/180 (6%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
K V+ K VVDAT GNG DTL + K +SA V+ D+Q++A +T+ LL+K +
Sbjct: 13 KEVIDKNSIVVDATAGNGNDTLFLAK-----TSAKKVFAFDVQNQATTNTNDLLEKN-NL 66
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A+K V L H ++ + ++ ++ V FNLGYLP D ++ T +ETT A++
Sbjct: 67 ADKCEVIL--DSHENFDKYIEEN--IQAVVFNLGYLPNADHTITTQAETTLNAIKKFITK 122
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
L GG I +VVY GH G+ E +A+ L + +Q +N + AP ++ L KR
Sbjct: 123 LNIGGRIVIVVYWGHENGKVEKDALLKELSQLDQKEIEVLVYQFINQKNNAPFIIALEKR 182
>gi|15895826|ref|NP_349175.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
gi|337737779|ref|YP_004637226.1| rRNA methylase [Clostridium acetobutylicum DSM 1731]
gi|384459289|ref|YP_005671709.1| putative rRNA methylase (SAM-dependent methyltransferase
superfamily) [Clostridium acetobutylicum EA 2018]
gi|15025588|gb|AAK80515.1|AE007754_13 Possible rRNA methylase (SAM-dependent methyltransferase
superfamily), YTQB B.subtilis [Clostridium
acetobutylicum ATCC 824]
gi|325509978|gb|ADZ21614.1| putative rRNA methylase (SAM-dependent methyltransferase
superfamily) [Clostridium acetobutylicum EA 2018]
gi|336292895|gb|AEI34029.1| rRNA methylase [Clostridium acetobutylicum DSM 1731]
Length = 188
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 8/177 (4%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V++ GDT VD T GNG DT + ++V D+ G VY DIQ +AL ST L+ + +
Sbjct: 18 VLKPGDTAVDCTAGNGNDTDFLCEIVKDK---GRVYAFDIQEKALLSTKRKLEASGNIK- 73
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
+VKL H +++ + ++ ++ FNLGYLPG + T SETT A++ ++L
Sbjct: 74 --IVKLIKDGHENLDKYIREN--IKAAVFNLGYLPGESHIITTKSETTLEAVKKLLKLLY 129
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
G+I + +Y GH GR E EA+ L+ + K Q +N+ P + + +R
Sbjct: 130 RNGVIIINIYHGHEEGRVEKEALYKLCSKLNQRKYNVFKAQFINQVNCPPELLVIER 186
>gi|386586764|ref|YP_006083166.1| SAM-dependent methyltransferase [Streptococcus suis D12]
gi|353738910|gb|AER19918.1| SAM-dependent methyltransferase [Streptococcus suis D12]
Length = 184
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ ++ D VDAT GNG+DTL + + AG V DIQ +AL +T+ L+
Sbjct: 8 AHAFLDEILTDQDLAVDATMGNGHDTLFLAQ------RAGKVVAFDIQEQALTTTAEKLE 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
K GL +L H +++ V + A FNLGYLP DKSVIT TT A
Sbjct: 62 KA------GLTNAQLVLTGHENLDQYVEECKAA---IFNLGYLPSADKSVITLPATTLQA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
+E L+ GG ++++VY GH GG E +AV F L + ++ LN+ P
Sbjct: 113 IEKVLDRLVVGGRLAIMVYYGHEGGALEKDAVLDFISQLDQTVFTTMLYKPLNQVNTPPF 172
Query: 262 VFLFKR 267
+ + +R
Sbjct: 173 LVMVER 178
>gi|417092319|ref|ZP_11957053.1| SAM-dependent methyltransferase [Streptococcus suis R61]
gi|353532888|gb|EHC02557.1| SAM-dependent methyltransferase [Streptococcus suis R61]
Length = 184
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ ++ D VDAT GNG+DTL + + AG V DIQ +AL +T+ L+
Sbjct: 8 AHAFLDEILTDQDLAVDATMGNGHDTLFLAQ------RAGKVVAFDIQEQALTTTAEKLE 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
K GL +L H +++ V + A FNLGYLP DKSVIT TT A
Sbjct: 62 KA------GLTNAQLVLTGHENLDQYVEECKAA---IFNLGYLPSADKSVITLPATTLQA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
+E L+ GG ++++VY GH GG E +AV F L + ++ LN+ P
Sbjct: 113 IEKVLDRLVVGGRLAIMVYYGHEGGALEKDAVLDFISQLDQTVFTAMLYKPLNQVNTPPF 172
Query: 262 VFLFKR 267
+ + +R
Sbjct: 173 LVMVER 178
>gi|146319324|ref|YP_001199036.1| SAM-dependent methyltransferase [Streptococcus suis 05ZYH33]
gi|146321528|ref|YP_001201239.1| SAM-dependent methyltransferase [Streptococcus suis 98HAH33]
gi|223934023|ref|ZP_03625977.1| putative rRNA methylase [Streptococcus suis 89/1591]
gi|253752355|ref|YP_003025496.1| rRNA methylase [Streptococcus suis SC84]
gi|253754181|ref|YP_003027322.1| rRNA methylase [Streptococcus suis P1/7]
gi|253756115|ref|YP_003029255.1| rRNA methylase [Streptococcus suis BM407]
gi|302024304|ref|ZP_07249515.1| rRNA methylase [Streptococcus suis 05HAS68]
gi|330833292|ref|YP_004402117.1| SAM-dependent methyltransferase [Streptococcus suis ST3]
gi|386578494|ref|YP_006074900.1| Putative rRNA methylase [Streptococcus suis GZ1]
gi|386580567|ref|YP_006076972.1| SAM-dependent methyltransferase [Streptococcus suis JS14]
gi|386582639|ref|YP_006079043.1| SAM-dependent methyltransferase [Streptococcus suis SS12]
gi|386584695|ref|YP_006081098.1| SAM-dependent methyltransferase [Streptococcus suis D9]
gi|386588763|ref|YP_006085164.1| SAM-dependent methyltransferase [Streptococcus suis A7]
gi|403062112|ref|YP_006650328.1| SAM-dependent methyltransferase [Streptococcus suis S735]
gi|145690130|gb|ABP90636.1| SAM-dependent methyltransferase [Streptococcus suis 05ZYH33]
gi|145692334|gb|ABP92839.1| SAM-dependent methyltransferase [Streptococcus suis 98HAH33]
gi|223897312|gb|EEF63719.1| putative rRNA methylase [Streptococcus suis 89/1591]
gi|251816644|emb|CAZ52285.1| putative rRNA methylase [Streptococcus suis SC84]
gi|251818579|emb|CAZ56413.1| putative rRNA methylase [Streptococcus suis BM407]
gi|251820427|emb|CAR47091.1| putative rRNA methylase [Streptococcus suis P1/7]
gi|292558957|gb|ADE31958.1| Putative rRNA methylase [Streptococcus suis GZ1]
gi|319758759|gb|ADV70701.1| SAM-dependent methyltransferase [Streptococcus suis JS14]
gi|329307515|gb|AEB81931.1| SAM-dependent methyltransferase [Streptococcus suis ST3]
gi|353734785|gb|AER15795.1| SAM-dependent methyltransferase [Streptococcus suis SS12]
gi|353736841|gb|AER17850.1| SAM-dependent methyltransferase [Streptococcus suis D9]
gi|354985924|gb|AER44822.1| SAM-dependent methyltransferase [Streptococcus suis A7]
gi|402809438|gb|AFR00930.1| SAM-dependent methyltransferase [Streptococcus suis S735]
Length = 184
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ ++ D VDAT GNG+DTL + + AG V DIQ +AL +T+ L+
Sbjct: 8 AHAFLDEILTDQDLAVDATMGNGHDTLFLAQ------RAGKVVAFDIQEQALTTTAEKLE 61
Query: 144 KTTSKAEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
K GL +L H +++ V + A FNLGYLP DKSVIT TT A
Sbjct: 62 KA------GLTNAQLVLTGHENLDQYVDECKAA---IFNLGYLPSADKSVITLPATTLQA 112
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
+E L+ GG +++++Y GH GG E +AV F L + ++ LN+ P
Sbjct: 113 IEKVLNRLVVGGRLAIMIYYGHEGGALEKDAVLDFISQLDQTVFTAMLYKPLNQVNTPPF 172
Query: 262 VFLFKR 267
+ + +R
Sbjct: 173 LVMVER 178
>gi|338812854|ref|ZP_08625007.1| hypothetical protein ALO_11999 [Acetonema longum DSM 6540]
gi|337275153|gb|EGO63637.1| hypothetical protein ALO_11999 [Acetonema longum DSM 6540]
Length = 189
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 8/176 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ ++DAT GNG DTL + + ++ ++ DIQ AL S + L + +
Sbjct: 18 LKDASVILDATAGNGKDTLFLAQNTPPDA---VIWAFDIQQTALASAETHLRQAGFFHK- 73
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V+ H + E + + + +NLGYLPG D + T E+T ++L+ L
Sbjct: 74 --VRFIWDSHVNLSEHIHQP--IDAAVYNLGYLPGSDHGITTAPESTVLSLDRLMHQLNQ 129
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GL+++V Y GH G EE +AV AF +SL D+ +QMLN+ P ++++ +R
Sbjct: 130 SGLVAIVAYTGHEPGLEEQKAVHAFLQSLPQKDFAVAGWQMLNQMNNPPMLYVIER 185
>gi|298368465|ref|ZP_06979783.1| rRNA methylase [Neisseria sp. oral taxon 014 str. F0314]
gi|298282468|gb|EFI23955.1| rRNA methylase [Neisseria sp. oral taxon 014 str. F0314]
Length = 186
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 15/170 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ GD +D T GNG+DTL++ + V G V+ D+Q +AL+ T L++ AE
Sbjct: 18 LKNGDAALDGTAGNGHDTLLLAQCV----GGGKVWAFDVQPQALQQTRRRLEEAGVSAE- 72
Query: 152 GLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
L H ++ + V P + AV FN G+LPGGDK+ T + T+ AL AA +L
Sbjct: 73 ----LICDGHEKLADYVDRPLTAAV----FNFGWLPGGDKTCTTQAATSVAALSAAVSLL 124
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
GL+ V+Y GH G E ++VE +A +L + K+ NR P
Sbjct: 125 EESGLLVAVLYPGHEAGFAEAQSVEEWAAALPQQQFAVLKYVFTNRQNRP 174
>gi|154503156|ref|ZP_02040216.1| hypothetical protein RUMGNA_00980 [Ruminococcus gnavus ATCC 29149]
gi|153796150|gb|EDN78570.1| putative rRNA methylase [Ruminococcus gnavus ATCC 29149]
Length = 180
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 15/184 (8%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT--T 146
K +++GD VDAT GNG DT + ++ + G VY DIQ A++ T L++ T
Sbjct: 3 KEHIKEGDCCVDATAGNGNDTEFLCRLTG---ADGKVYAFDIQKAAVEHTKKRLEEAGLT 59
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
+A K+ H ME V ++ V + FN GYLPGGD + T ++T+ A+EA
Sbjct: 60 ERA-----KVILDGHEHMENYVRET--VSAITFNFGYLPGGDHQIATQADTSIQAIEAGL 112
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDW---ICCKFQMLNRPLAPVLVF 263
R+L GG++S+ +Y G G E EA+ ++ +L + + + N P P V
Sbjct: 113 RLLKKGGIMSLCIYSGGDSGFAEKEALLSYLETLDSRTFLVIVSTYYNRQNHPPIPAFVI 172
Query: 264 LFKR 267
K
Sbjct: 173 RIKE 176
>gi|379705839|ref|YP_005204298.1| SAM-dependent methyltransferase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|374682538|gb|AEZ62827.1| SAM-dependent methyltransferase [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 182
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 96/179 (53%), Gaps = 16/179 (8%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT-SKA 149
V+ G VDAT GNG DT+ + + A VY D+Q +ALKST L+K S A
Sbjct: 16 VLDDGAVAVDATMGNGNDTVFLAQ------HAKKVYAFDVQEQALKSTQERLEKQAISNA 69
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA-ERI 208
+ L H + + V S +R FNLGYLP DK+VIT +TT +A+E ER+
Sbjct: 70 Q-----LILDGHQNLAKYV--SEPIRAAIFNLGYLPSADKTVITRPDTTLVAIEKILERL 122
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
I GG +++++Y GH GG E +AV + +L ++ ++ LN+ P + + ++
Sbjct: 123 EI-GGRLAIMIYYGHEGGDMEKDAVLDYVSALDQKEFATMLYKPLNQIHQPPFLVMIEK 180
>gi|291532848|emb|CBL05961.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Megamonas hypermegale
ART12/1]
Length = 196
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 8/181 (4%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
K+ + + +VDAT GNG DTL + + + + +Y DIQ EA+++T +LL K
Sbjct: 16 KNRLNEAKIIVDATAGNGNDTLFLAQNTLNNAQ---IYAFDIQKEAIENTKALLIKNKDN 72
Query: 149 AEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
L + + H ++ + T + + FNLGYLPGGD T +TT A++
Sbjct: 73 INLPLENISFIHDSHEHIDNYI--QTKIDIAIFNLGYLPGGDHKFTTKDDTTLKAIDKIL 130
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLF 265
L G +++V+Y GH G +E ++++ F + L + ++M+N AP L ++
Sbjct: 131 NNLNINGYVAIVMYPGHEEGLKEYQSIKLFVKDLPKKSFTVGWYKMINHNFNAPALCWIE 190
Query: 266 K 266
K
Sbjct: 191 K 191
>gi|416841070|ref|ZP_11904187.1| hypothetical protein SAO11_1596 [Staphylococcus aureus O11]
gi|323439583|gb|EGA97303.1| hypothetical protein SAO11_1596 [Staphylococcus aureus O11]
Length = 187
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H+ + VVDATCGNG DTL + A++ G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHITPES-IVVDATCGNGNDTLFL----AEQVPEGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL++T DK L+K H +E + + + A FNLGYLP GDKS+
Sbjct: 56 ALENTR---DKVKDFNHVSLIK---DGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A+ + ++ G+I +V+Y GH G+ E A+ + +L ++Q
Sbjct: 110 VTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLYQKHAQVLQYQ 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|315649044|ref|ZP_07902137.1| putative rRNA methylase [Paenibacillus vortex V453]
gi|315275479|gb|EFU38834.1| putative rRNA methylase [Paenibacillus vortex V453]
Length = 196
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 97/180 (53%), Gaps = 8/180 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+R+GD +DAT G G DTL + K + S G VY DIQ +AL+ T L K + +
Sbjct: 18 LRQGDIALDATAGTGADTLYLAKCIG---SRGKVYAFDIQEQALQLTRERLAKESPDSLP 74
Query: 152 GLVKLFNMCHSRMEEIVPKST--AVRLVAFNLGYLPG--GDKSVITTSETTKMALEAAER 207
+ L H+ M+ V V V FNLGYLP DK ++T + +T ALEAA
Sbjct: 75 A-ISLHQQSHALMKSCVSDRDHGQVGAVMFNLGYLPADSSDKRIMTETASTLTALEAAIE 133
Query: 208 ILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+L PGG+I++V+Y GH GG E AV+A+A L ++ L R AP L+ L ++
Sbjct: 134 LLRPGGIITVVLYPGHKGGDAEAAAVQAWAERLPQHAVQTILYRGLQRADAPYLIALERK 193
>gi|379796122|ref|YP_005326121.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356873113|emb|CCE59452.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 187
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H K VVDATCGNG DTL + A++ S G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHTSSKS-IVVDATCGNGNDTLFL----AEQVSEGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL++T + T+ V L H + + + A FNLGYLP GDKS+
Sbjct: 56 ALENTREKIKSFTN------VTLIKDGHENVARYIQDKHKGHIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A+ + ++L G+I +V+Y GH G+ E + + +L +++
Sbjct: 110 VTKPDTTIQAINSLLKMLSIEGIIILVIYHGHIEGQIEKNEILEYLSNLDQKQAQVLQYK 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|253576645|ref|ZP_04853973.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251844059|gb|EES72079.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 198
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 100/180 (55%), Gaps = 8/180 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+R GD VDAT G G DTL + K + G V+ DIQ +AL T + LDK + +
Sbjct: 18 LRLGDAAVDATAGTGADTLFLAKACGPK---GRVFAFDIQPQALALTKARLDKEPADSIA 74
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLP--GGDKSVITTSETTKMALEAAER 207
G V L H+ M ++P RL V FNLGYLP G D ++IT ++T ALEAA
Sbjct: 75 G-VTLLQASHADMAAVLPADVHGRLGAVMFNLGYLPAEGADPALITQPDSTLPALEAALA 133
Query: 208 ILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+L P G+++ V+Y GHPGG E AVEA+A +L ++ RP AP L+ + K+
Sbjct: 134 LLRPRGILTAVLYPGHPGGDAEAAAVEAWAAALPASAGQAILYRQPQRPAAPYLIAIEKK 193
>gi|418412151|ref|ZP_12985416.1| hypothetical protein HMPREF9281_01020 [Staphylococcus epidermidis
BVS058A4]
gi|410890165|gb|EKS37965.1| hypothetical protein HMPREF9281_01020 [Staphylococcus epidermidis
BVS058A4]
Length = 187
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ V+DATCGNG DT + + V + G VYG DIQ +A+ +T + ++
Sbjct: 18 INHNSIVIDATCGNGNDTAYLAQHVPN----GFVYGFDIQEQAILNTHKKIKDYSN---- 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + + + A FNLGYLP G+K ++T ETT MA+ IL
Sbjct: 70 --VKLIQSGHENAKLYISAQHHGHIDAAIFNLGYLPKGNKEIVTKPETTIMAINEIFEIL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
G+I +V+Y GH G+ E E + F ++ + ++Q +N + AP + + KR
Sbjct: 128 SIEGIIILVIYHGHEEGKVEKEVLLEFLQNFDQNKAHILQYQFINQKNNAPFICAIEKR 186
>gi|418326994|ref|ZP_12938168.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU071]
gi|365223873|gb|EHM65146.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU071]
Length = 187
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ V+DATCGNG DT + + V + G VYG DIQ +A+ +T + ++
Sbjct: 18 INHNSIVIDATCGNGNDTAYLAQHVPN----GFVYGFDIQEQAILNTHKKIKDYSN---- 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + + + A FNLGYLP G+K ++T ETT MA+ IL
Sbjct: 70 --VKLIQTGHENAKLYISAQHHGHIDAAIFNLGYLPKGNKEIVTKPETTIMAINEIFDIL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
G+I +V+Y GH G+ E E + F ++ + ++Q +N + AP + + KR
Sbjct: 128 SIEGIIILVIYHGHEEGKVEKEVLLEFLQNFDQNKAHILQYQFINQKNNAPFICAIEKR 186
>gi|187777042|ref|ZP_02993515.1| hypothetical protein CLOSPO_00587 [Clostridium sporogenes ATCC
15579]
gi|187773970|gb|EDU37772.1| putative rRNA methylase [Clostridium sporogenes ATCC 15579]
Length = 188
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 9/165 (5%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
GD VD T G G+DT+++ +V +E G V DIQ EA+ T L K +
Sbjct: 24 GDIAVDCTLGKGHDTILLANLVGNE---GKVISFDIQKEAIDKTKEKLKDIDYKN----I 76
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGL 214
L N H ++ + + V+L FNLGYLPG D ++ T +ETT AL+ A ++L G+
Sbjct: 77 TLINDGHENLDRYIQEK--VKLFIFNLGYLPGKDHNITTEAETTLKALKKALKLLDDNGI 134
Query: 215 ISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
+ +V+Y GH G+EE +E F +L + K +N+ P
Sbjct: 135 VLLVIYYGHENGKEEKAVLEKFTSALDQKVYNVMKNSFINQANDP 179
>gi|148378358|ref|YP_001252899.1| hypothetical protein CBO0355 [Clostridium botulinum A str. ATCC
3502]
gi|153931757|ref|YP_001382757.1| hypothetical protein CLB_0398 [Clostridium botulinum A str. ATCC
19397]
gi|153936917|ref|YP_001386308.1| hypothetical protein CLC_0413 [Clostridium botulinum A str. Hall]
gi|226947586|ref|YP_002802677.1| hypothetical protein CLM_0423 [Clostridium botulinum A2 str. Kyoto]
gi|148287842|emb|CAL81908.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
3502]
gi|152927801|gb|ABS33301.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
19397]
gi|152932831|gb|ABS38330.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
gi|226842840|gb|ACO85506.1| conserved hypothetical protein [Clostridium botulinum A2 str.
Kyoto]
Length = 188
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 95/176 (53%), Gaps = 9/176 (5%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ ++ ++ GD VD T G G+DT+++ +V ++ G V DIQ EA+ T L +
Sbjct: 16 ICENTLKFGDIAVDCTLGKGHDTILLANLVGNK---GKVISFDIQKEAINKTREKLREFD 72
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
K + L N H +++ + + V+L FNLGYLPG D ++ T +ETT AL+ A
Sbjct: 73 YKN----ITLINDGHENLDKHIQEK--VKLFIFNLGYLPGKDHNITTKAETTLKALKKAL 126
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
++L G++ +V+Y GH G+EE A+E F L + K +N+ P L+
Sbjct: 127 KLLDDNGIVLLVIYYGHENGKEEKAALEKFTSELDQKVYNVMKNSFINQANNPPLL 182
>gi|225077173|ref|ZP_03720372.1| hypothetical protein NEIFLAOT_02228 [Neisseria flavescens
NRL30031/H210]
gi|224951521|gb|EEG32730.1| hypothetical protein NEIFLAOT_02228 [Neisseria flavescens
NRL30031/H210]
Length = 189
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 12/173 (6%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ ++ G +DAT GNG+DTL++ + V + G V+ D+QS+AL T L +
Sbjct: 15 RQALKAGGRALDATAGNGHDTLLLAQSVGE---TGRVWAFDVQSKALMQTQGRLKENGVD 71
Query: 149 AEKGLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
G V L + H + + P AV FN G+LPGGDKS T + ++ AL
Sbjct: 72 ---GRVALIHDGHENLSSYIDEPLDAAV----FNFGWLPGGDKSCTTEAASSIRALTDTL 124
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
+L GGL V+Y GH GR E EA+ +A +L + + ++ +NR AP
Sbjct: 125 GLLKEGGLAVAVLYPGHEAGRVEAEAIVQWAETLPQEAFAVLRYGFVNRRNAP 177
>gi|417896496|ref|ZP_12540446.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21235]
gi|341840643|gb|EGS82137.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21235]
Length = 187
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H+ + VVDATCGNG DTL + A++ G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHITPES-IVVDATCGNGNDTLFL----AEQVPEGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
+L++T DK L+K H +E + + + A FNLGYLP GDKS+
Sbjct: 56 SLENTR---DKVKDFNHVSLIK---DGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A+ + ++ G+I +V+Y GH G+ E A+ + +L ++Q
Sbjct: 110 VTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLNYLSTLDQKHAQVLQYQ 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|222152593|ref|YP_002561768.1| rRNA methylase [Streptococcus uberis 0140J]
gi|222113404|emb|CAR41065.1| putative rRNA methylase [Streptococcus uberis 0140J]
Length = 181
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 13/176 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V K VDAT GNG DTL +V VY DIQ EA+ +T K E
Sbjct: 16 VTKDSIFVDATVGNGNDTLYFAPLVKK------VYAFDIQKEAIS-------RTQQKLEA 62
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
++ + H E + + FNLGYLP DK ++T S TT A+E L+
Sbjct: 63 NGIENVILIHDGHENVNHYVQDIDAAIFNLGYLPHSDKKIVTKSSTTLQAIEKIYERLVK 122
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG I+++VY GH GG EE +A+ + ++ +Q LN+ P + + ++
Sbjct: 123 GGRIALMVYYGHDGGEEEKDAILQYLSTMDQKQTTVMVYQSLNQVNCPPYLVMIEK 178
>gi|449956347|ref|ZP_21809443.1| hypothetical protein SMU36_02444 [Streptococcus mutans 4VF1]
gi|449170629|gb|EMB73325.1| hypothetical protein SMU36_02444 [Streptococcus mutans 4VF1]
Length = 181
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 18/180 (10%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+ VDAT GNG DT + + A VY D+Q +AL+ T L++ +
Sbjct: 16 VLESNSIAVDATMGNGNDTAFLAGL------ASKVYAFDVQEQALQKTKERLEQLSFDNA 69
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
+ ++ H +++ V S +R FNLGYLP DKS+IT +TT LEA ++IL
Sbjct: 70 QLILD----GHQNIDKYV--SEPIRAAIFNLGYLPSADKSIITKPDTT---LEAIQKILD 120
Query: 211 P---GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG IS+++Y GH GG+ E AV F + L + +Q LN+ P + + ++
Sbjct: 121 RLEVGGRISIMIYYGHEGGQMEKNAVLNFVKELDQQHFTVMLYQPLNQINTPPFLVMIEK 180
>gi|319637816|ref|ZP_07992582.1| hypothetical protein HMPREF0604_00205 [Neisseria mucosa C102]
gi|317400971|gb|EFV81626.1| hypothetical protein HMPREF0604_00205 [Neisseria mucosa C102]
Length = 189
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 12/178 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + + ++ G +DAT GNG+DTL++ ++V + G V+ D+QS+AL T L
Sbjct: 10 AHSLLRQALKAGGRALDATAGNGHDTLLLAQLVGE---TGKVWAFDVQSKALAQTQGRLK 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ G V L + H + + P AV FN G+LPGGDKS T + ++ A
Sbjct: 67 EN---GVDGRVALIHDGHENLSSYIDEPLDAAV----FNFGWLPGGDKSCTTEAASSIRA 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
L +L GL V+Y GH GR E EA+ +A +L + + ++ +NR AP
Sbjct: 120 LTDTLGLLKESGLAVAVLYPGHEAGRIEAEAIVQWAETLPQEAFAVLRYGFVNRRNAP 177
>gi|241758659|ref|ZP_04756773.1| methylase protein [Neisseria flavescens SK114]
gi|241321170|gb|EER57366.1| methylase protein [Neisseria flavescens SK114]
Length = 189
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 12/178 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + + ++ G +DAT GNG+DTL++ + V + G V+ D+QS+AL T L
Sbjct: 10 AHSLLRQALKAGGRALDATAGNGHDTLLLAQSVGE---TGRVWAFDVQSKALMQTQGRLK 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ G V L + H + + P AV FN G+LPGGDKS T + ++ A
Sbjct: 67 EN---GVDGRVALIHGGHENLLSYIDEPLDAAV----FNFGWLPGGDKSCTTEAASSIRA 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
L +L GGL V+Y GH GR E EA+ +A +L + + ++ +NR AP
Sbjct: 120 LTDTLGLLKEGGLAVAVLYPGHEAGRIEAEAIVQWAETLPQEAFAVLRYGFVNRRNAP 177
>gi|153939332|ref|YP_001389723.1| hypothetical protein CLI_0427 [Clostridium botulinum F str.
Langeland]
gi|170757483|ref|YP_001780008.1| hypothetical protein CLD_0396 [Clostridium botulinum B1 str. Okra]
gi|429244592|ref|ZP_19208034.1| hypothetical protein CFSAN001628_004228 [Clostridium botulinum
CFSAN001628]
gi|152935228|gb|ABS40726.1| conserved hypothetical protein [Clostridium botulinum F str.
Langeland]
gi|169122695|gb|ACA46531.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
gi|428758396|gb|EKX80826.1| hypothetical protein CFSAN001628_004228 [Clostridium botulinum
CFSAN001628]
Length = 188
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 96/179 (53%), Gaps = 9/179 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + ++ ++ GD VVD T G G+DT+++ +V ++ G V DIQ EA+ T L
Sbjct: 13 AKYICENTLKFGDIVVDCTLGKGHDTILLANLVGNK---GKVISFDIQKEAINKTKEKLR 69
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ K + L N H ++ + + V+L FNLGYLPG D ++ T +ETT AL+
Sbjct: 70 EFDYKN----ITLINDGHENLDRHIQEK--VKLFIFNLGYLPGKDHNITTKAETTIKALK 123
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
A ++L G++ +V+Y GH G+EE A+E F L + K +N+ P L+
Sbjct: 124 KALKLLDDNGIVLLVIYYGHESGKEEKAALEKFTSKLDQKVYNVMKNSFINQVNNPPLL 182
>gi|416847835|ref|ZP_11907414.1| hypothetical protein SAO46_2058 [Staphylococcus aureus O46]
gi|323442030|gb|EGA99666.1| hypothetical protein SAO46_2058 [Staphylococcus aureus O46]
Length = 187
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H+ + VVDATCGNG DTL + A++ G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHITPES-IVVDATCGNGNDTLFL----AEQVPEGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL++T DK L+K H +E + + + A FNLGY+P GDKS+
Sbjct: 56 ALENTR---DKVKDFNHVSLIK---DGHENIEHHINDAHKGHIDAAIFNLGYMPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A+ + ++ G+I +V+Y GH G+ E A+ + +L ++Q
Sbjct: 110 VTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLYQKHAQVLQYQ 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|358053079|ref|ZP_09146870.1| hypothetical protein SS7213T_07952 [Staphylococcus simiae CCM 7213]
gi|357257440|gb|EHJ07706.1| hypothetical protein SS7213T_07952 [Staphylococcus simiae CCM 7213]
Length = 186
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 99/196 (50%), Gaps = 21/196 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P + TLI+ +H+ V+DATCGNG DTL + + V G VYG DIQS
Sbjct: 8 PFAKTLIS-------QHITTSS-VVIDATCGNGNDTLFLAQSVP----QGHVYGFDIQSI 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL+ T +KT A + L H + + + A FNLGYLP GDKS+
Sbjct: 56 ALEHTK---EKT---AHFDNISLILDGHEHVNRYIRDEHKGHIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+TT TT A+E +L G+I +V+Y GH G+ E +A+ + + L K++
Sbjct: 110 VTTPVTTIKAIEDILALLSKEGIIVLVIYHGHSEGQLERDALLEYVQHLDQQYAHVLKYE 169
Query: 252 MLN-RPLAPVLVFLFK 266
+N R AP ++ + K
Sbjct: 170 FINQRNYAPFIIAIEK 185
>gi|406659515|ref|ZP_11067653.1| rRNA methylase [Streptococcus iniae 9117]
gi|405577624|gb|EKB51772.1| rRNA methylase [Streptococcus iniae 9117]
Length = 180
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 13/177 (7%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
++ K ++DAT GNG DTL VA VY DIQ EA++S+ L+ AE
Sbjct: 15 ILNKESILIDATVGNGNDTLFFAPKVA------KVYAFDIQEEAIESSRQKLEL----AE 64
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V L H ++ V + A FNLGYLP DK++IT TT MALE A L
Sbjct: 65 ITNVDLILDGHEHLDAYVDQIDAA---IFNLGYLPRADKTIITKPRTTLMALEKAITRLK 121
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG I+++VY GH GG E +A+ + L+ + +Q +N+ P + + ++
Sbjct: 122 IGGRIAIMVYYGHEGGDREKDALFDYLEKLNQNMLTVMTYQAINQINTPPFLLMIEK 178
>gi|282882011|ref|ZP_06290652.1| rRNA methylase [Peptoniphilus lacrimalis 315-B]
gi|281298041|gb|EFA90496.1| rRNA methylase [Peptoniphilus lacrimalis 315-B]
Length = 181
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 13/174 (7%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KG + VDAT G G DT +LK+V ++ G V+ D+Q +A+ +
Sbjct: 20 KGKSAVDATMGMGNDTEKLLKVVGEK---GKVFAFDVQDQAINYCKEKFKNINN------ 70
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
+++ + H E + L +NLGYLPG DKSV T + +T ++L A +++ GG
Sbjct: 71 LEILKISH----EFIDILENFDLAIYNLGYLPGSDKSVTTMAMSTVISLMKATQLINKGG 126
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+I +V Y+GH +EE +++E F +SL +I K + N+ P +V++ ++
Sbjct: 127 IIIVVSYLGHENSKEERDSLEKFLKSLDQKKFIVEKREFFNQINNPPIVYVLEK 180
>gi|258438327|ref|ZP_05689611.1| conserved hypothetical protein [Staphylococcus aureus A9299]
gi|257848371|gb|EEV72362.1| conserved hypothetical protein [Staphylococcus aureus A9299]
Length = 187
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 96/191 (50%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H+ + V DATCGNG DTL + A++ G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHITPES-IVADATCGNGNDTLFL----AEQVPEGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL++T DK L+K H +E + + + A FNLGYLP GDKS+
Sbjct: 56 ALENTR---DKVKDFNHVSLIK---DGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A+ + ++ G+I +V+Y GH G+ E A+ + +L ++Q
Sbjct: 110 VTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLDQKHAQVLQYQ 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|427414278|ref|ZP_18904468.1| hypothetical protein HMPREF9282_01875 [Veillonella ratti
ACS-216-V-Col6b]
gi|425714654|gb|EKU77657.1| hypothetical protein HMPREF9282_01875 [Veillonella ratti
ACS-216-V-Col6b]
Length = 198
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 99/190 (52%), Gaps = 19/190 (10%)
Query: 88 WKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKTT 146
W ++ T++DAT GNG+D L + A+ G ++GLD Q EA+++++ L
Sbjct: 15 WDEQLKSAKTIIDATAGNGHDLLYL----ANHCRPGATIWGLDKQPEAIEASTKRLQTEC 70
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKST----------AVRLVAFNLGYLPGGDKSVITTSE 196
+ + + + + E+I+ + ++ L+ FNLGYLPG D S++T +
Sbjct: 71 KRTDIE----YCLVQGKHEDILANTAKDSDDSSVIESIDLLIFNLGYLPGSDHSMMTQAG 126
Query: 197 TTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP 256
+T A++ +L P GLI++V Y G P G +E AV F SL + ++++N+
Sbjct: 127 STIQAIKGGLGLLNPKGLITVVTYPGTPEGEQENRAVREFLTSLPQKQYDSATWELINQA 186
Query: 257 LAPVLVFLFK 266
P ++++ K
Sbjct: 187 NKPPILYIIK 196
>gi|242374052|ref|ZP_04819626.1| rRNA methyltransferase [Staphylococcus epidermidis M23864:W1]
gi|242348242|gb|EES39844.1| rRNA methyltransferase [Staphylococcus epidermidis M23864:W1]
Length = 187
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 13/173 (7%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157
V+DATCGNG DT + A + G VYG DIQ EA+ +T +D + VKL
Sbjct: 24 VIDATCGNGNDTYYL----ASKVERGFVYGFDIQQEAIDNTRLKIDGFEN------VKLI 73
Query: 158 NMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215
H +++ + K ++ A FNLGYLP G+K+++T +TT A+E+ +L G+I
Sbjct: 74 LDGHENIKKHISKEHIGKIDAAIFNLGYLPKGNKAIVTQPKTTIKAIESIFEVLSVEGII 133
Query: 216 SMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
+V+Y GH G+ E +A+ + ++Q +N + AP L + KR
Sbjct: 134 ILVIYHGHEEGKIERDALIDYLSQFYQHQAHILQYQFINQKNHAPFLCAIEKR 186
>gi|357238471|ref|ZP_09125808.1| putative rRNA methylase [Streptococcus ictaluri 707-05]
gi|356753194|gb|EHI70315.1| putative rRNA methylase [Streptococcus ictaluri 707-05]
Length = 196
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 90/188 (47%), Gaps = 21/188 (11%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ +K V+ V+D T G G DT + S A VY D+Q EAL T L
Sbjct: 9 SHSFFKEVIDDSSVVLDGTMGKGNDTAFL------ASLAKKVYAFDVQEEALVKTQERLQ 62
Query: 144 KTTSKAEKGLVK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
E GL L H ++ + + +R FNLGYLP +KS+IT ETT MA
Sbjct: 63 ------ELGLTNADLILDGHENLDNYIEEP--IRAAIFNLGYLPSAEKSLITKPETTLMA 114
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS---VDDWICCKFQMLNRPLA 258
L +L GG I+++VY GH GG+EE EA+ F L V + +NRP
Sbjct: 115 LSKTLEVLEVGGRIAVMVYYGHQGGQEEKEALLHFVSQLDQRLVTAMLYQPLNQINRP-- 172
Query: 259 PVLVFLFK 266
P L+ L K
Sbjct: 173 PFLIMLEK 180
>gi|57867203|ref|YP_188893.1| hypothetical protein SERP1321 [Staphylococcus epidermidis RP62A]
gi|293366298|ref|ZP_06612978.1| rRNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
gi|417658650|ref|ZP_12308271.1| putative rRNA methylase [Staphylococcus epidermidis VCU045]
gi|417908734|ref|ZP_12552491.1| putative rRNA methylase [Staphylococcus epidermidis VCU037]
gi|420205937|ref|ZP_14711448.1| hypothetical protein HMPREF9977_00517 [Staphylococcus epidermidis
NIHLM008]
gi|420221467|ref|ZP_14726397.1| putative rRNA methylase [Staphylococcus epidermidis NIH08001]
gi|420225940|ref|ZP_14730766.1| putative rRNA methylase [Staphylococcus epidermidis NIH06004]
gi|420229852|ref|ZP_14734554.1| putative rRNA methylase [Staphylococcus epidermidis NIH04003]
gi|57637861|gb|AAW54649.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
gi|291319536|gb|EFE59902.1| rRNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
gi|329737492|gb|EGG73745.1| putative rRNA methylase [Staphylococcus epidermidis VCU045]
gi|341656095|gb|EGS79818.1| putative rRNA methylase [Staphylococcus epidermidis VCU037]
gi|394278610|gb|EJE22924.1| hypothetical protein HMPREF9977_00517 [Staphylococcus epidermidis
NIHLM008]
gi|394290565|gb|EJE34419.1| putative rRNA methylase [Staphylococcus epidermidis NIH08001]
gi|394293051|gb|EJE36779.1| putative rRNA methylase [Staphylococcus epidermidis NIH06004]
gi|394298651|gb|EJE42216.1| putative rRNA methylase [Staphylococcus epidermidis NIH04003]
Length = 187
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ V+DAT GNG DT + V + G VYG DIQ +A+ +T KT +
Sbjct: 18 INHNSIVIDATSGNGNDTAYFAQHVPN----GLVYGFDIQEQAILNTHK---KTKDYSN- 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + +P + FNLGYLP G+K ++T ETT MA+ IL
Sbjct: 70 --VKLIQSGHENAKLHIPAQHHGCIDAAIFNLGYLPKGNKEIVTKPETTIMAINEIFDIL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
G+I +V+Y GH G+ E EA+ F ++ + ++Q +N + AP + + KR
Sbjct: 128 SIEGIIILVIYHGHEEGKVEKEALLEFLQNFDQNKAHILQYQFINQKNNAPFICAIEKR 186
>gi|450049722|ref|ZP_21839843.1| hypothetical protein SMU68_00610 [Streptococcus mutans NFSM1]
gi|449203473|gb|EMC04332.1| hypothetical protein SMU68_00610 [Streptococcus mutans NFSM1]
Length = 181
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA 149
V+ K +DAT GNG DT+ + + A VY D+Q +AL T L++ K
Sbjct: 15 QVLDKNSIAIDATMGNGNDTVFLTHL------AKKVYAFDVQKQALIKTREKLEQLNIKN 68
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA-ERI 208
V+L H + + V + +R FNLGYLP DKSVIT TT A++ ER+
Sbjct: 69 ----VQLILDGHQTINKYV--TEPIRAAIFNLGYLPSADKSVITQPATTLTAIKKILERL 122
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
I GG ++++VY GH GG +E +AV F + L + +Q LN+ P + + ++
Sbjct: 123 EI-GGRLAIMVYYGHEGGDKEKDAVLNFVKELDQQHFTVMLYQPLNQINTPPFLVMIEK 180
>gi|357235802|ref|ZP_09123145.1| hypothetical protein STRCR_2148 [Streptococcus criceti HS-6]
gi|356883784|gb|EHI73984.1| hypothetical protein STRCR_2148 [Streptococcus criceti HS-6]
Length = 182
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+ K VDAT GNG DT + + + VY DIQ +AL+ T L A
Sbjct: 16 VLDKDSIAVDATMGNGNDTAFLANL------SKKVYAFDIQEQALEKTRERL------AH 63
Query: 151 KGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL-EAAER 207
+ L +L H +++ V S +R FNLGYLP DKSVIT +TT A+ + ER
Sbjct: 64 QNLTNAQLILDGHEKVDTYV--SEPIRAAIFNLGYLPSADKSVITKPDTTLSAIGKILER 121
Query: 208 ILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+ + GG +S+++Y GH GG +E +AV + R L + + +Q LN+ P + + ++
Sbjct: 122 LEV-GGRLSIMIYYGHKGGNQEKDAVLDYVRQLDQNRFTAMLYQPLNQVNTPPFLVMMEK 180
>gi|420184707|ref|ZP_14690816.1| hypothetical protein HMPREF9986_03062 [Staphylococcus epidermidis
NIHLM040]
gi|394257358|gb|EJE02280.1| hypothetical protein HMPREF9986_03062 [Staphylococcus epidermidis
NIHLM040]
Length = 187
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ V+DATCGNG DT + + V + G VYG DIQ +A+ +T + ++
Sbjct: 18 INHNSIVIDATCGNGNDTAYLAQHVPN----GFVYGFDIQEQAILNTHKKIKDYSN---- 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + + + A FNLGYLP G+K ++T ETT +A+ IL
Sbjct: 70 --VKLIQSGHENAKLYISAQHHGHIDAAIFNLGYLPKGNKEIVTKPETTIIAINEIFEIL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
G+I +V+Y GH G+ E E + F ++ + ++Q +N + AP + + KR
Sbjct: 128 SIEGIIILVIYHGHEEGKVEKEVLLEFLQNFDQNKAHILQYQFINQKNNAPFICAIEKR 186
>gi|419795823|ref|ZP_14321403.1| putative rRNA methylase [Neisseria sicca VK64]
gi|385700036|gb|EIG30293.1| putative rRNA methylase [Neisseria sicca VK64]
Length = 189
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 97/186 (52%), Gaps = 12/186 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + K ++ +D T GNG DTLM+ V SS G V+ D+Q +AL +T L+
Sbjct: 10 AHTLLKQALKPDARALDGTAGNGNDTLMLALSV---SSGGKVWAFDVQEQALANTRMRLE 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ A++ V+L H + + P AV FN G+LPGGDKS T + T+ A
Sbjct: 67 EAC-MADR--VELIWDGHENLANHIREPLDAAV----FNFGWLPGGDKSCTTEAATSIRA 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
L +A +L GGL V+Y GH G E +A+E +A L D++ ++ +NR P
Sbjct: 120 LSSALSLLKTGGLAVAVLYPGHEAGLYEAQAIEDWALQLPQDEFAVLRYGFINRRNRPPY 179
Query: 262 VFLFKR 267
+ F++
Sbjct: 180 LLAFEK 185
>gi|225867956|ref|YP_002743904.1| rRNA methylase [Streptococcus equi subsp. zooepidemicus]
gi|414564687|ref|YP_006043648.1| rRNA methylase [Streptococcus equi subsp. zooepidemicus ATCC 35246]
gi|225701232|emb|CAW98182.1| putative rRNA methylase [Streptococcus equi subsp. zooepidemicus]
gi|338847752|gb|AEJ25964.1| rRNA methylase [Streptococcus equi subsp. zooepidemicus ATCC 35246]
Length = 185
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 92/183 (50%), Gaps = 21/183 (11%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
K V+ K VDAT GNGYDT + S + VY D+Q +AL T L+
Sbjct: 14 KEVLDKQSIAVDATMGNGYDTAFL------ASLSQRVYAFDVQQQALTKTQERLE----- 62
Query: 149 AEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
++GL +L H ++++ V + +R FNLGYLP DK++IT ETT +AL
Sbjct: 63 -QQGLTNAELILAGHEQVDQYVKEP--IRAAIFNLGYLPNADKTLITRPETTILALAKIL 119
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ---MLNRPLAPVLVF 263
L GG I+++VY GH GG E EA+ + L +Q +N+P P L+
Sbjct: 120 DRLELGGRIAIMVYYGHDGGSREKEALLDYIGQLDQRQVTAMLYQPINQMNQP--PFLIM 177
Query: 264 LFK 266
L K
Sbjct: 178 LEK 180
>gi|168177698|ref|ZP_02612362.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
gi|182671192|gb|EDT83166.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
Length = 188
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + ++ ++ GD VD T G G+DT+++ +V ++ G V DIQ EA+ T L
Sbjct: 13 AKYICENTLKFGDIAVDCTLGKGHDTILLANLVGNK---GKVISFDIQKEAINKTKEKLR 69
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ K + L N H ++ + + V+L FNLGYLPG D ++ T +ETT AL+
Sbjct: 70 EFDYKN----ITLINDGHENLDRHIQEK--VKLFIFNLGYLPGKDHNITTKAETTIKALK 123
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
A ++L G++ +V+Y GH G+EE A+E F L + K +N+ P L+
Sbjct: 124 KALKLLDDNGIVLLVIYYGHESGKEEKAALEKFTSKLDQKVYNVMKNSFINQANNPPLL 182
>gi|312899125|ref|ZP_07758503.1| methyltransferase family protein [Megasphaera micronuciformis
F0359]
gi|310619792|gb|EFQ03374.1| methyltransferase family protein [Megasphaera micronuciformis
F0359]
Length = 191
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 95/176 (53%), Gaps = 7/176 (3%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V++ +VD TCGNGYDTL + K + +++ +YG DIQ+ AL ST S L+ E
Sbjct: 21 VKRARVLVDMTCGNGYDTLFLAKHMDEQA---FLYGFDIQASALASTQSRLETNGLFHEH 77
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+KL H + + K+ + FNLGYLPGG++++ T + T A++ +
Sbjct: 78 IQLKL--GSHENLLSKIDKTP--DFIVFNLGYLPGGNRAIHTDTAITLKAVDLGLHKISV 133
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
G+I +V Y G P G++E + + +F +S + +Q N+ P ++F+ ++
Sbjct: 134 NGIIMIVAYPGTPDGKKEKDELASFLSHVSQKRFDVSYWQPANQVHEPPVLFVIQK 189
>gi|295103806|emb|CBL01350.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Faecalibacterium
prausnitzii SL3/3]
Length = 288
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VDATCGNG DT + + A AG V D+Q EA++ST + L++ A++ L
Sbjct: 125 VDATCGNGGDTAFLCNLTA---PAGRVLAFDVQPEAIRSTRTRLEQANVPADR--YSLVC 179
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H+ + + V TA V FN G+LPG D +V +T++++ AL+AA + + PGG++S +
Sbjct: 180 GSHADLLQYVQPGTA-DAVMFNFGWLPGADHAVFSTAQSSIPALQAALQAVRPGGIVSAI 238
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDW--ICCKF 250
+Y G G +E +AV F R+L + + + C F
Sbjct: 239 LYSGAVIGSDEKQAVLRFLRALPLKSFTVLVCDF 272
>gi|404418075|ref|ZP_10999853.1| hypothetical protein SARL_09347 [Staphylococcus arlettae CVD059]
gi|403489478|gb|EJY95045.1| hypothetical protein SARL_09347 [Staphylococcus arlettae CVD059]
Length = 186
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 10/166 (6%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157
V+DATCGNG DTL + +V G VYG DIQ +AL +TS+ KT + L+K
Sbjct: 24 VIDATCGNGNDTLFLANLVPQ----GHVYGFDIQEQALAATSA---KTENYHNVTLIKDS 76
Query: 158 NMCHSRMEEIVPKSTA-VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216
+ S+ + K + FNLGYLP GDKS++T +T A+ + +L G+I
Sbjct: 77 HANASK--HLTSKHNGTIDAAIFNLGYLPNGDKSIVTKPSSTIEAINSIFNMLATEGIII 134
Query: 217 MVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
+V+Y GH G E +A+ + ++Q +N+ P +
Sbjct: 135 LVIYSGHEEGAVEKDALMKYLHDFDQQQAHILQYQFINQQNNPPFI 180
>gi|24380072|ref|NP_722027.1| hypothetical protein SMU_1697c [Streptococcus mutans UA159]
gi|449864944|ref|ZP_21778720.1| hypothetical protein SMU101_03763 [Streptococcus mutans U2B]
gi|449872806|ref|ZP_21781622.1| hypothetical protein SMU10_08607 [Streptococcus mutans 8ID3]
gi|449886304|ref|ZP_21786128.1| hypothetical protein SMU104_02297 [Streptococcus mutans SA41]
gi|449904784|ref|ZP_21792846.1| hypothetical protein SMU108_06726 [Streptococcus mutans M230]
gi|449914668|ref|ZP_21795736.1| hypothetical protein SMU20_01779 [Streptococcus mutans 15JP3]
gi|449929597|ref|ZP_21801656.1| hypothetical protein SMU26_02570 [Streptococcus mutans 3SN1]
gi|449941762|ref|ZP_21805630.1| hypothetical protein SMU3_02526 [Streptococcus mutans 11A1]
gi|449973907|ref|ZP_21814984.1| hypothetical protein SMU44_01250 [Streptococcus mutans 11VS1]
gi|449984229|ref|ZP_21818915.1| hypothetical protein SMU52_02064 [Streptococcus mutans NFSM2]
gi|449990460|ref|ZP_21821559.1| hypothetical protein SMU53_05506 [Streptococcus mutans NVAB]
gi|449999308|ref|ZP_21824448.1| hypothetical protein SMU56_00907 [Streptococcus mutans N29]
gi|450039104|ref|ZP_21836073.1| hypothetical protein SMU63_01045 [Streptococcus mutans T4]
gi|450076931|ref|ZP_21850105.1| hypothetical protein SMU75_03295 [Streptococcus mutans N3209]
gi|450083181|ref|ZP_21852772.1| hypothetical protein SMU76_07058 [Streptococcus mutans N66]
gi|450100931|ref|ZP_21858933.1| hypothetical protein SMU80_07989 [Streptococcus mutans SF1]
gi|317455176|pdb|3LBY|A Chain A, Crystal Structure Of Smu.1697c, A Putative
Methyltransferase From Streptococcus Mutans In Complex
With Sah
gi|317455177|pdb|3LBY|B Chain B, Crystal Structure Of Smu.1697c, A Putative
Methyltransferase From Streptococcus Mutans In Complex
With Sah
gi|24378066|gb|AAN59333.1|AE014999_1 conserved hypothetical protein [Streptococcus mutans UA159]
gi|449151776|gb|EMB55500.1| hypothetical protein SMU3_02526 [Streptococcus mutans 11A1]
gi|449154298|gb|EMB57896.1| hypothetical protein SMU10_08607 [Streptococcus mutans 8ID3]
gi|449157771|gb|EMB61206.1| hypothetical protein SMU20_01779 [Streptococcus mutans 15JP3]
gi|449164302|gb|EMB67368.1| hypothetical protein SMU26_02570 [Streptococcus mutans 3SN1]
gi|449179001|gb|EMB81234.1| hypothetical protein SMU44_01250 [Streptococcus mutans 11VS1]
gi|449180480|gb|EMB82637.1| hypothetical protein SMU52_02064 [Streptococcus mutans NFSM2]
gi|449181734|gb|EMB83803.1| hypothetical protein SMU53_05506 [Streptococcus mutans NVAB]
gi|449187044|gb|EMB88845.1| hypothetical protein SMU56_00907 [Streptococcus mutans N29]
gi|449200760|gb|EMC01781.1| hypothetical protein SMU63_01045 [Streptococcus mutans T4]
gi|449211941|gb|EMC12327.1| hypothetical protein SMU75_03295 [Streptococcus mutans N3209]
gi|449213806|gb|EMC14132.1| hypothetical protein SMU76_07058 [Streptococcus mutans N66]
gi|449220197|gb|EMC20097.1| hypothetical protein SMU80_07989 [Streptococcus mutans SF1]
gi|449254483|gb|EMC52391.1| hypothetical protein SMU104_02297 [Streptococcus mutans SA41]
gi|449258958|gb|EMC56510.1| hypothetical protein SMU108_06726 [Streptococcus mutans M230]
gi|449264576|gb|EMC61914.1| hypothetical protein SMU101_03763 [Streptococcus mutans U2B]
Length = 181
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA 149
V+ K +DAT GNG DT+ + + A VY D+Q +AL T L++ K
Sbjct: 15 QVLDKNSIAIDATMGNGNDTVFLSHL------AKKVYAFDVQEQALIKTREKLEQLNIKN 68
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA-ERI 208
V+L H + + V + +R FNLGYLP DKSVIT TT A++ ER+
Sbjct: 69 ----VQLILDGHQTINKYV--TEPIRAAIFNLGYLPSADKSVITQPATTLTAIKKILERL 122
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
I GG ++++VY GH GG +E +AV F + L + +Q LN+ P + + ++
Sbjct: 123 EI-GGRLAIMVYYGHEGGDKEKDAVLNFVKELDQQHFTVMLYQPLNQINTPPFLVMIEK 180
>gi|418281318|ref|ZP_12894132.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21178]
gi|365165643|gb|EHM57427.1| MraW methylase-like family protein [Staphylococcus aureus subsp.
aureus 21178]
Length = 187
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 74 PLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
P S TLI +H+ + VVDATCGNG DTL + A++ G VYG DIQ
Sbjct: 8 PFSKTLIK-------QHITPES-IVVDATCGNGNDTLFL----AEQVPEGHVYGFDIQDL 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSV 191
AL++T DK L+K + +E + + + A FNLGYLP GDKS+
Sbjct: 56 ALENTR---DKVKDFNHVSLIK---DGYENIEHHINDAHKGHIDAAIFNLGYLPKGDKSI 109
Query: 192 ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251
+T +TT A+ + ++ G+I +V+Y GH G+ E A+ + +L ++Q
Sbjct: 110 VTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLDQKHAQVLQYQ 169
Query: 252 MLN-RPLAPVL 261
LN R AP +
Sbjct: 170 FLNQRNHAPFI 180
>gi|449875002|ref|ZP_21781965.1| hypothetical protein SMU102_00754 [Streptococcus mutans S1B]
gi|449935221|ref|ZP_21803251.1| hypothetical protein SMU29_00330 [Streptococcus mutans 2ST1]
gi|450156486|ref|ZP_21878717.1| hypothetical protein SMU93_09068 [Streptococcus mutans 21]
gi|449166860|gb|EMB69780.1| hypothetical protein SMU29_00330 [Streptococcus mutans 2ST1]
gi|449235853|gb|EMC34797.1| hypothetical protein SMU93_09068 [Streptococcus mutans 21]
gi|449254380|gb|EMC52289.1| hypothetical protein SMU102_00754 [Streptococcus mutans S1B]
Length = 181
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 18/181 (9%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA 149
V+ K +DAT GNG DT+ + + A VY D+Q +AL T L++ K
Sbjct: 15 QVLDKNSIAIDATMGNGNDTVFLSHL------AKKVYAFDVQEQALIKTKEKLEQLNIKN 68
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L H +++ V +R FNLGYLP DK++IT +TT LEA +IL
Sbjct: 69 ----VQLILDGHQTIDKYV--DGPIRAAIFNLGYLPSADKTIITKPDTT---LEAIGKIL 119
Query: 210 IP---GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
GG IS+++Y GH GG +E +AV F + L + +Q LN+ P + + +
Sbjct: 120 DRLEVGGRISIMIYYGHEGGDKEKDAVLNFVKELDQQHFTVMLYQPLNQINTPPFLVMIE 179
Query: 267 R 267
+
Sbjct: 180 K 180
>gi|449964245|ref|ZP_21811191.1| hypothetical protein SMU40_01637 [Streptococcus mutans 15VF2]
gi|449172762|gb|EMB75374.1| hypothetical protein SMU40_01637 [Streptococcus mutans 15VF2]
Length = 181
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 18/181 (9%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA 149
V+ K +DAT GNG DT+ + + A VY D+Q +AL T L++ K
Sbjct: 15 QVLDKNSIAIDATMGNGNDTVFLSHL------AKKVYAFDVQEQALIKTREKLEQLNIKN 68
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L H + + V + +R FNLGYLP DK++IT +TT LEA +IL
Sbjct: 69 ----VQLILDGHQTINKYV--TEPIRAAIFNLGYLPSADKTIITKPDTT---LEAIGKIL 119
Query: 210 IP---GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
GG IS+++Y GH GG +E +AV F + L + +Q LN+ P + + +
Sbjct: 120 DRLEVGGRISIMIYYGHEGGDKEKDAVLNFVKELDQQHFTVMLYQPLNQINTPPFLVMIE 179
Query: 267 R 267
+
Sbjct: 180 K 180
>gi|223043516|ref|ZP_03613561.1| SAM-dependent methyltransferase, MraW methylase family
[Staphylococcus capitis SK14]
gi|314933913|ref|ZP_07841278.1| SAM-dependent methyltransferase, MraW methylase family
[Staphylococcus caprae C87]
gi|417905996|ref|ZP_12549790.1| putative rRNA methylase [Staphylococcus capitis VCU116]
gi|222443004|gb|EEE49104.1| SAM-dependent methyltransferase, MraW methylase family
[Staphylococcus capitis SK14]
gi|313654063|gb|EFS17820.1| SAM-dependent methyltransferase, MraW methylase family
[Staphylococcus caprae C87]
gi|341598382|gb|EGS40893.1| putative rRNA methylase [Staphylococcus capitis VCU116]
Length = 187
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 92/173 (53%), Gaps = 13/173 (7%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157
V+DATCGNG DTL + A++ + G VYG DIQ EA+ +T + + V L
Sbjct: 24 VIDATCGNGNDTLYL----AEKVTNGFVYGFDIQKEAIDNTQLKVSDFNN------VSLI 73
Query: 158 NMCHSRMEEIVPKS--TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215
H +++ V + + FNLGYLP GDKS++T ++T A+E ++ G+I
Sbjct: 74 QDSHENVKQHVLERHLNLIDCAIFNLGYLPKGDKSIVTKPDSTIKAIEEIFDMMRVEGII 133
Query: 216 SMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
+V+Y GH G+ E +A+ + + L ++Q +N + AP + + KR
Sbjct: 134 ILVIYHGHDEGKLERDALLKYLKELDQQKAHVLQYQFINQKNNAPFICAIEKR 186
>gi|374625025|ref|ZP_09697442.1| hypothetical protein HMPREF0978_00762 [Coprobacillus sp.
8_2_54BFAA]
gi|373916308|gb|EHQ48056.1| hypothetical protein HMPREF0978_00762 [Coprobacillus sp.
8_2_54BFAA]
Length = 171
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 16/182 (8%)
Query: 87 VWKHVVRKGDTV-VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT 145
V + RK + +D T GNG+DTL + K+ A VY DIQ EAL +T L++ T
Sbjct: 5 VHNRIKRKDYQIAIDFTMGNGHDTLFLSKV------AKQVYSFDIQQEALNNTKKLIEDT 58
Query: 146 TSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA 205
+ V L H + V K+ V + FNLGYLP GD + T ++++ A++ A
Sbjct: 59 DN------VNLILASHENFDCYV-KNFDVGI--FNLGYLPNGDHQITTMADSSLQAIKKA 109
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
L G + +VVY+GH G++E +E + SL + F+M+N+ AP ++ +
Sbjct: 110 VEYLNRKGELFLVVYIGHDEGKKESLLIEEYVASLDHISYNVALFKMMNKLSAPYVIQIE 169
Query: 266 KR 267
KR
Sbjct: 170 KR 171
>gi|225871129|ref|YP_002747076.1| rRNA methylase [Streptococcus equi subsp. equi 4047]
gi|225700533|emb|CAW95003.1| putative rRNA methylase [Streptococcus equi subsp. equi 4047]
Length = 185
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 92/183 (50%), Gaps = 21/183 (11%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
K V+ K VDAT GNGYDT + S + VY D+Q +AL T L+
Sbjct: 14 KEVLDKQSIAVDATMGNGYDTAFL------ASLSQRVYAFDVQQQALTKTQERLE----- 62
Query: 149 AEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
++GL +L H ++++ V + +R FNLGYLP DKS+IT ETT +AL
Sbjct: 63 -QQGLTNAELILAGHEQVDQYVKEP--IRAAIFNLGYLPNADKSLITRPETTILALAKIL 119
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ---MLNRPLAPVLVF 263
L GG I+++VY GH GG E E + + L+ +Q +N+P P L+
Sbjct: 120 DRLELGGRIAIMVYYGHDGGSREKEELLDYIGQLNQRQVTAMLYQPINQMNQP--PFLIM 177
Query: 264 LFK 266
L K
Sbjct: 178 LEK 180
>gi|170758569|ref|YP_001785692.1| hypothetical protein CLK_3543 [Clostridium botulinum A3 str. Loch
Maree]
gi|169405558|gb|ACA53969.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
Maree]
Length = 188
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + ++ ++ GD VD T G G+DT+++ +V ++ G V DIQ EA+ T L
Sbjct: 13 AKYICENTLKFGDIAVDCTLGKGHDTILLANLVGNK---GKVISFDIQKEAINKTKEKLR 69
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ K + L N H ++ + + V+L FNLGYLPG D ++ T +ETT AL+
Sbjct: 70 EFDYKN----ITLINDGHENLDRHIQEK--VKLFIFNLGYLPGKDHNITTKAETTIKALK 123
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
A ++L G++ +V+Y GH G+EE A+E F L + K +N+ P L+
Sbjct: 124 KALKLLDDNGIVLLVIYYGHESGKEEKAALEKFTSKLDQKVYNVMKNSFINQVNNPPLL 182
>gi|167755732|ref|ZP_02427859.1| hypothetical protein CLORAM_01247 [Clostridium ramosum DSM 1402]
gi|237734698|ref|ZP_04565179.1| rRNA methylase [Mollicutes bacterium D7]
gi|365831362|ref|ZP_09372914.1| hypothetical protein HMPREF1021_01678 [Coprobacillus sp. 3_3_56FAA]
gi|167704671|gb|EDS19250.1| putative rRNA methylase [Clostridium ramosum DSM 1402]
gi|229382026|gb|EEO32117.1| rRNA methylase [Coprobacillus sp. D7]
gi|365261839|gb|EHM91740.1| hypothetical protein HMPREF1021_01678 [Coprobacillus sp. 3_3_56FAA]
Length = 174
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 16/182 (8%)
Query: 87 VWKHVVRKGDTV-VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT 145
V + RK + +D T GNG+DTL + K+ A VY DIQ EAL +T L++ T
Sbjct: 8 VHNRIKRKDYQIAIDFTMGNGHDTLFLSKV------AKQVYSFDIQQEALNNTKKLIEDT 61
Query: 146 TSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA 205
+ V L H + V K+ V + FNLGYLP GD + T ++++ A++ A
Sbjct: 62 DN------VNLILASHENFDCYV-KNFDVGI--FNLGYLPNGDHQITTMADSSLQAIKKA 112
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
L G + +VVY+GH G++E +E + SL + F+M+N+ AP ++ +
Sbjct: 113 VEYLNRKGELFLVVYIGHDEGKKESLLIEEYVASLDHISYNVALFKMMNKLSAPYVIQIE 172
Query: 266 KR 267
KR
Sbjct: 173 KR 174
>gi|158320607|ref|YP_001513114.1| putative rRNA methylase [Alkaliphilus oremlandii OhILAs]
gi|158140806|gb|ABW19118.1| putative rRNA methylase [Alkaliphilus oremlandii OhILAs]
Length = 189
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 105/184 (57%), Gaps = 14/184 (7%)
Query: 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
+ K +++G+ +DAT GNG DT+ + + V +G VY D+Q AL++T +K T
Sbjct: 14 ILKEKIKQGNIAIDATMGNGNDTVFLARSVG---ISGKVYSFDVQEIALRNTK---EKIT 67
Query: 147 SKAEKGL-VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA 205
KG ++L N H + + + V +V FNLGYLP GD ++IT +TT A+
Sbjct: 68 EHHLKGYDIQLINDGHENINQYI--EGLVDVVMFNLGYLPKGDPAIITRPKTTIKAISHM 125
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCK---FQMLNRPLAPVLV 262
++L PGG+IS+++Y GH GG+EE EAV F + + ++ + +N P P++V
Sbjct: 126 IQLLKPGGIISIIIYYGHEGGKEEKEAVLDFLKGIPKEEITVIESNYTNHMNNP--PIIV 183
Query: 263 FLFK 266
F+ K
Sbjct: 184 FIEK 187
>gi|169349640|ref|ZP_02866578.1| hypothetical protein CLOSPI_00378 [Clostridium spiroforme DSM 1552]
gi|169293715|gb|EDS75848.1| putative rRNA methylase [Clostridium spiroforme DSM 1552]
Length = 175
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL 156
T +D T GNG DTL + K+ VY DIQ ALK+T L+ + V+L
Sbjct: 19 TAIDFTMGNGNDTLTLSKVTK------KVYSFDIQELALKNTKKLIKDINN------VEL 66
Query: 157 FNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216
H ++ V + FNLGYLP GD + T +TT +A++ A + L G +
Sbjct: 67 ILDSHENFDKYV---NNYDIGVFNLGYLPQGDHHITTMVDTTLIAIDKAVKCLNKDGHLY 123
Query: 217 MVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+VVY+GH G++E V+ + L + F+M+N+ AP ++ + KR
Sbjct: 124 IVVYIGHNEGKKESVKVDEYVSKLDHQSYNVSLFKMMNKQNAPYIIEIEKR 174
>gi|195978727|ref|YP_002123971.1| SAM-dependent methyltransferase [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195975432|gb|ACG62958.1| SAM-dependent methyltransferase [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 185
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 91/181 (50%), Gaps = 17/181 (9%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
K V+ K VDAT GNGYDT + S + VY D+Q +AL T L+
Sbjct: 14 KEVLDKQSIAVDATMGNGYDTAFL------ASLSQRVYAFDVQQQALTKTQERLE----- 62
Query: 149 AEKGLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
++GL +L H ++++ V + +R FNLGYLP DK++IT ETT +AL
Sbjct: 63 -QQGLTNAELILAGHEQVDQYVKEP--IRAAIFNLGYLPNADKTLITRPETTILALAKIL 119
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLF 265
L GG I+++VY GH GG E EA+ + L +Q +N+ P L+ L
Sbjct: 120 DRLELGGRIAIMVYYGHDGGSREKEALLDYIGQLDQRQVTAMLYQPINQMNQRPFLIMLE 179
Query: 266 K 266
K
Sbjct: 180 K 180
>gi|329120638|ref|ZP_08249301.1| rRNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200]
gi|327460862|gb|EGF07196.1| rRNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200]
Length = 200
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 102/177 (57%), Gaps = 9/177 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ G +D T GNG+DTL++ + ++ G V+ D+Q +AL +T L T+ A+K
Sbjct: 23 LKSGGRALDGTAGNGHDTLLLAWLAGED---GIVWAFDVQPQALANTKDRL--KTAGADK 77
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V+L H+R+ + V + + FN GYLPGG K++ T ++T+ ALEAA +L
Sbjct: 78 -QVRLICASHARLADYVAEPLDAAM--FNFGYLPGGSKNLTTRADTSVAALEAAVSLLAG 134
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
GG+++ V+Y GH G E AV+A+A +L + + ++ N R P+L+ + KR
Sbjct: 135 GGILTAVLYDGHAEGARESAAVQAWAAALPQERFAVLRYGFANQRNCPPLLLAVEKR 191
>gi|387785619|ref|YP_006250715.1| putative rRNA methylase [Streptococcus mutans LJ23]
gi|449908706|ref|ZP_21793903.1| hypothetical protein SMU109_02478 [Streptococcus mutans OMZ175]
gi|449924067|ref|ZP_21799407.1| hypothetical protein SMU22_00835 [Streptococcus mutans 4SM1]
gi|450046878|ref|ZP_21839178.1| hypothetical protein SMU66_06974 [Streptococcus mutans N34]
gi|450062745|ref|ZP_21844522.1| hypothetical protein SMU70_04394 [Streptococcus mutans NLML5]
gi|450120722|ref|ZP_21865865.1| hypothetical protein SMU85_03025 [Streptococcus mutans ST6]
gi|450124948|ref|ZP_21867343.1| hypothetical protein SMU86_00775 [Streptococcus mutans U2A]
gi|450132556|ref|ZP_21870132.1| hypothetical protein SMU88_04342 [Streptococcus mutans NLML8]
gi|450143151|ref|ZP_21873284.1| hypothetical protein SMU9_00660 [Streptococcus mutans 1ID3]
gi|450160049|ref|ZP_21879776.1| hypothetical protein SMU94_04451 [Streptococcus mutans 66-2A]
gi|450169430|ref|ZP_21882993.1| hypothetical protein SMU97_01379 [Streptococcus mutans SM4]
gi|379132020|dbj|BAL68772.1| putative rRNA methylase [Streptococcus mutans LJ23]
gi|449152762|gb|EMB56462.1| hypothetical protein SMU9_00660 [Streptococcus mutans 1ID3]
gi|449153025|gb|EMB56718.1| hypothetical protein SMU88_04342 [Streptococcus mutans NLML8]
gi|449163364|gb|EMB66472.1| hypothetical protein SMU22_00835 [Streptococcus mutans 4SM1]
gi|449198234|gb|EMB99358.1| hypothetical protein SMU66_06974 [Streptococcus mutans N34]
gi|449205477|gb|EMC06224.1| hypothetical protein SMU70_04394 [Streptococcus mutans NLML5]
gi|449229917|gb|EMC29204.1| hypothetical protein SMU85_03025 [Streptococcus mutans ST6]
gi|449233127|gb|EMC32211.1| hypothetical protein SMU86_00775 [Streptococcus mutans U2A]
gi|449240545|gb|EMC39216.1| hypothetical protein SMU94_04451 [Streptococcus mutans 66-2A]
gi|449247324|gb|EMC45608.1| hypothetical protein SMU97_01379 [Streptococcus mutans SM4]
gi|449262614|gb|EMC60061.1| hypothetical protein SMU109_02478 [Streptococcus mutans OMZ175]
Length = 181
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 18/181 (9%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA 149
V+ K +DAT GNG DT+ + + A VY D+Q +AL T L++ K
Sbjct: 15 QVLDKNSIAIDATMGNGNDTVFLSHL------AKKVYAFDVQEQALIKTKEKLEQLNIKN 68
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L H +++ V +R FNLGYLP DK++IT +TT LEA +IL
Sbjct: 69 ----VQLILDGHQTIDKYV--DGPIRAAIFNLGYLPSADKTIITKPDTT---LEAIGKIL 119
Query: 210 IP---GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
GG IS+++Y GH GG+ E AV F + L + +Q LN+ P + + +
Sbjct: 120 DRLEVGGRISIMIYYGHEGGQMEKNAVLNFVKELDQQHFTVMLYQPLNQINTPPFLVMIE 179
Query: 267 R 267
+
Sbjct: 180 K 180
>gi|325290000|ref|YP_004266181.1| rRNA methylase [Syntrophobotulus glycolicus DSM 8271]
gi|324965401|gb|ADY56180.1| rRNA methylase [Syntrophobotulus glycolicus DSM 8271]
Length = 200
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 14/153 (9%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
++ +GD V+D T G G DTL + ++V G VY DIQ +A+++T LL +
Sbjct: 20 MISEGDLVLDCTAGLGRDTLFLARLVG---PRGKVYAFDIQDKAVEATKKLLQ------D 70
Query: 151 KGLVK---LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAER 207
+GL+K + H+ + E + T ++ FNLG+LPG D +T +E+T A++
Sbjct: 71 EGLLKRVEVLQADHADLREWI--KTEIKAAVFNLGFLPGSDHQTVTNAESTIEAIKGCLE 128
Query: 208 ILIPGGLISMVVYVGHPGGREELEAVEAFARSL 240
+L G +S+ VY GH GG EE A+ F SL
Sbjct: 129 LLAVKGAVSITVYRGHRGGEEEAAALNVFTASL 161
>gi|342216735|ref|ZP_08709382.1| MraW methylase-like family protein [Peptoniphilus sp. oral taxon
375 str. F0436]
gi|341587625|gb|EGS31025.1| MraW methylase-like family protein [Peptoniphilus sp. oral taxon
375 str. F0436]
Length = 185
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 93/190 (48%), Gaps = 15/190 (7%)
Query: 75 LSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGC-VYGLDIQSE 133
L I + N + +H ++ D +D T G G D+ +L E+ G V DIQ E
Sbjct: 2 LEENAIVLMRNFIQRHK-KEVDLALDLTLGRGKDSNFIL-----ETYPGSRVLAFDIQEE 55
Query: 134 ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT 193
AL K K + L + + H ++ + + V L NLGYLPGGDK++IT
Sbjct: 56 ALDWV-----KENLKNQDRLQVILD-GHQNLDSYLDQE--VDLAMMNLGYLPGGDKTIIT 107
Query: 194 TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQML 253
+ TT MA+E A L GGL +++VY HPG EE+ AVE R L D+ + +
Sbjct: 108 KAATTVMAIEKALEALKVGGLFTLLVYRSHPGAGEEVAAVEDLVRVLDQRDYRVQRIEFY 167
Query: 254 NRPLAPVLVF 263
N+ P + F
Sbjct: 168 NQKNQPPVFF 177
>gi|317471246|ref|ZP_07930611.1| hypothetical protein HMPREF1011_00959 [Anaerostipes sp. 3_2_56FAA]
gi|316901293|gb|EFV23242.1| hypothetical protein HMPREF1011_00959 [Anaerostipes sp. 3_2_56FAA]
Length = 183
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 85/184 (46%), Gaps = 20/184 (10%)
Query: 88 WKH-----VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142
W H +R+GD +DAT GNG DT + + V G +IQ EAL +T L
Sbjct: 8 WVHEELRRFIRQGDLCIDATVGNGGDTEYLCGLTDR------VIGFEIQEEALLNTGKRL 61
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL 202
+ E L H M+ K T V+ + FNLGYLPGGD + T +T A+
Sbjct: 62 ELKGYHPE-----LILDSHENMDRYAEKGT-VQAILFNLGYLPGGDHRIATRPNSTIQAV 115
Query: 203 EAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCK---FQMLNRPLAP 259
+L PGG+IS+ VY G G E E V + R L +I K + N P P
Sbjct: 116 RVGLELLKPGGIISVCVYSGGDTGFAEKEEVLQYLRQLDDRRYIVIKQDFYNKQNHPPLP 175
Query: 260 VLVF 263
VL+
Sbjct: 176 VLIL 179
>gi|429744772|ref|ZP_19278236.1| putative rRNA methylase [Neisseria sp. oral taxon 020 str. F0370]
gi|429162130|gb|EKY04480.1| putative rRNA methylase [Neisseria sp. oral taxon 020 str. F0370]
Length = 194
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 104/178 (58%), Gaps = 13/178 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ G +D T GNG+DTL++ +++ + G V+ DIQ +AL +T L + A+K
Sbjct: 17 LKAGGRALDGTAGNGHDTLLLARLIGE---TGRVWAFDIQRQALDATEGRL--KAAGADK 71
Query: 152 GLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
+V L + H R+ + + P AV FN GYLPGGDK++ T +E++ ALEAA +L
Sbjct: 72 QVV-LIHDGHERLADYIKEPLDAAV----FNFGYLPGGDKNITTRAESSIAALEAALGLL 126
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFK 266
GG+++ V+Y GHP G +E AV+ +A +L + + ++ N R PVL+ + K
Sbjct: 127 AEGGILAAVLYGGHPAGAQESAAVQEWAAALPQERFAVLRYAFANQRNSPPVLLAVEK 184
>gi|374338580|ref|YP_005095295.1| MraW methylase family SAM-dependent methyltransferase
[Streptococcus macedonicus ACA-DC 198]
gi|372284695|emb|CCF02984.1| SAM-dependent methyltransferase, MraW methylase family
[Streptococcus macedonicus ACA-DC 198]
Length = 187
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 12/169 (7%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VDAT GNG DT+ + + A VY D+Q +AL+ST L+K E L
Sbjct: 24 VDATMGNGNDTVFLAQ------HAKEVYAFDVQEQALQSTKECLEKQ----EIHNAHLIL 73
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H ++ V + +R FNLGYLP DK+VIT +TT +A+E + L GG ++++
Sbjct: 74 DGHQHIDHYV--NQPIRAAIFNLGYLPSADKTVITKPDTTLIAVEKILKKLEVGGRLAIM 131
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+Y GH GG E +AV + L + +Q LN+ P + + ++
Sbjct: 132 IYYGHEGGDMEKDAVLEYVNQLDQRLFTAMLYQPLNQINQPPFLVMIEK 180
>gi|449918516|ref|ZP_21797404.1| hypothetical protein SMU21_00570 [Streptococcus mutans 1SM1]
gi|449160360|gb|EMB63633.1| hypothetical protein SMU21_00570 [Streptococcus mutans 1SM1]
Length = 181
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 18/181 (9%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA 149
V+ K +DAT GNG DT+ + + A VY D+Q +AL T L++ K
Sbjct: 15 QVLDKNSIAIDATMGNGNDTVFLSHL------AKKVYAFDVQEQALIKTKEKLEQLNIKN 68
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L H +++ V +R FNLGYLP DK++IT +TT LEA +IL
Sbjct: 69 ----VQLILDGHQTIDKYV--DGPIRAAIFNLGYLPSADKTIITKPDTT---LEAIGKIL 119
Query: 210 IP---GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
GG IS+++Y GH GG+ E AV F + L + +Q LN+ P + + +
Sbjct: 120 DRLEVGGRISIMIYYGHEGGQMEKNAVLNFVKELDQQHFTVMLYQPLNQINTPPFLVMIE 179
Query: 267 R 267
+
Sbjct: 180 K 180
>gi|167746441|ref|ZP_02418568.1| hypothetical protein ANACAC_01151 [Anaerostipes caccae DSM 14662]
gi|167653401|gb|EDR97530.1| putative rRNA methylase [Anaerostipes caccae DSM 14662]
Length = 190
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 85/184 (46%), Gaps = 20/184 (10%)
Query: 88 WKH-----VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142
W H +R+GD +DAT GNG DT + + V G +IQ EAL +T L
Sbjct: 15 WVHEELRRFIRQGDLCIDATVGNGGDTEYLCGLTDR------VIGFEIQEEALLNTGKRL 68
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL 202
+ E L H M+ K T V+ + FNLGYLPGGD + T +T A+
Sbjct: 69 ELKGYHPE-----LILDSHENMDRYAEKGT-VQAILFNLGYLPGGDHRIATRPNSTIQAV 122
Query: 203 EAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCK---FQMLNRPLAP 259
+L PGG+IS+ VY G G E E V + R L +I K + N P P
Sbjct: 123 RVGLELLKPGGIISVCVYSGGDTGFAEKEEVLQYLRQLDDRRYIVIKQDFYNKQNHPPLP 182
Query: 260 VLVF 263
VL+
Sbjct: 183 VLIL 186
>gi|392330743|ref|ZP_10275358.1| SAM-dependent methyltransferase [Streptococcus canis FSL Z3-227]
gi|391418422|gb|EIQ81234.1| SAM-dependent methyltransferase [Streptococcus canis FSL Z3-227]
Length = 184
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 101 ATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL--VKLFN 158
AT GNG+DT + ++ A VY D+Q +A+K TS L A+ GL +L
Sbjct: 26 ATMGNGHDTAFLAQL------AKKVYAFDVQEQAVKKTSERL------AQLGLSNAELIL 73
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H +++ V + VR FNLGYLP DKSVIT +TT +AL ++L GG ++++
Sbjct: 74 AGHEAVDQYV--TEPVRAAIFNLGYLPSADKSVITLPDTTLLALSKILKLLEVGGRVAIM 131
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
VY GH GG E +A+ F R L +Q LN+ P + + ++
Sbjct: 132 VYYGHEGGDREKDALLDFVRQLDQRLVSAMLYQPLNQVNTPPFLVMLEK 180
>gi|408423843|emb|CCJ11254.1| Similar to SAM-dependent methyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408425833|emb|CCJ13220.1| Similar to SAM-dependent methyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408427820|emb|CCJ15183.1| Similar to SAM-dependent methyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408429809|emb|CCJ26974.1| Similar to SAM-dependent methyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408431796|emb|CCJ19111.1| Similar to SAM-dependent methyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408433790|emb|CCJ21075.1| Similar to SAM-dependent methyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408435782|emb|CCJ23042.1| Similar to SAM-dependent methyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408437766|emb|CCJ25009.1| Similar to SAM-dependent methyltransferase [Staphylococcus aureus
subsp. aureus ST228]
Length = 163
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 87/166 (52%), Gaps = 13/166 (7%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
+DATCGNG DTL + A++ G VYG DIQ AL++T DK L+K
Sbjct: 1 MDATCGNGNDTLFL----AEQVPEGHVYGFDIQDLALENTR---DKVKDFNHVSLIK--- 50
Query: 159 MCHSRMEEIVPKSTAVRLVA--FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216
H +E + + + A FNLGYLP GDKS++T +TT A+ + ++ G+I
Sbjct: 51 DGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSIVTKPDTTIQAINSLLSLMSIEGIIV 110
Query: 217 MVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVL 261
+V+Y GH G+ E A+ + +L ++Q LN R AP +
Sbjct: 111 LVIYHGHSEGQIEKHALLDYLSTLDQKHAQVLQYQFLNQRNHAPFI 156
>gi|345860674|ref|ZP_08812968.1| putative rRNA methylase [Desulfosporosinus sp. OT]
gi|344326234|gb|EGW37718.1| putative rRNA methylase [Desulfosporosinus sp. OT]
Length = 161
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 12/157 (7%)
Query: 104 GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR 163
GNG DT + ++V G VYG DIQ +A+K+T L++ E + L H
Sbjct: 2 GNGNDTAFLCRLVG---QKGKVYGFDIQEDAIKNTRKKLEELNF-IESAEIILDG--HQN 55
Query: 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH 223
++ + ++ V+LV FNLGYLP G+ + T TT A++ IL P G+I ++VY GH
Sbjct: 56 IDNYIKEN--VKLVMFNLGYLPKGNHEITTKKGTTIAAVQKCLDILEPNGIILLIVYPGH 113
Query: 224 PGGREELEAVEAFARSLSVDDW----ICCKFQMLNRP 256
G++E EA+E+F L+ ++ IC Q+ N P
Sbjct: 114 ENGKKEKEALESFTTKLNQKEYNVANICFTNQINNPP 150
>gi|304440266|ref|ZP_07400156.1| rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371315|gb|EFM24931.1| rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 181
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 83/166 (50%), Gaps = 11/166 (6%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VDAT GNG DT +LK + V DIQ AL+S+ L KT S+ L+
Sbjct: 23 VDATLGNGNDTYSILKY-----TDAHVTSFDIQEMALESSLEKL-KTFSRDRYNLIL--- 73
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
HS M+ + S L+ FN GYLPG DK +IT +T ALE + L GG+I
Sbjct: 74 DSHSNMDRYLKDSPD--LIVFNTGYLPGSDKKIITDGQTLTKALEISVEALKTGGVIFFA 131
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
Y+GH G EE E + F ++L + K + N+ P +V+L
Sbjct: 132 QYIGHEGSFEESEITDVFFKNLCQKKFRVLKNEFYNQINNPPIVYL 177
>gi|308811711|ref|XP_003083163.1| Putative rRNA methylase (ISS) [Ostreococcus tauri]
gi|116055042|emb|CAL57438.1| Putative rRNA methylase (ISS), partial [Ostreococcus tauri]
Length = 187
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 88 WKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS 147
W + T VDAT G G D L +L + AD VYG D+++ A+ S + S
Sbjct: 6 WARERGRPGTCVDATLGRGRDALTLLDLGAD-----VVYGFDVEAAAIASARDAFE--AS 58
Query: 148 KAEKGLVKLFNMCHSRMEEIVPKST---AVRLVAFNLGYLPGGDKSVITTSETTKMA--- 201
+ G V++ CH+ + S AV VAFNLGYLPG D + T+
Sbjct: 59 GVDAGRVRVELRCHAEGLASLESSGLAGAVACVAFNLGYLPGDDAATRAGRARTRRETTT 118
Query: 202 --LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
LE+A R+ GG +++V YVGH GG +E E V +LS DW+ + +++NR AP
Sbjct: 119 AALESAFRLTRVGGRVTVVAYVGHDGGADECEGVRECLAALSSRDWVVTERRVVNRRRAP 178
Query: 260 VLVFLFKR 267
L +R
Sbjct: 179 ALFVALRR 186
>gi|336065803|ref|YP_004560661.1| putative rRNA methylase [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334295749|dbj|BAK31620.1| putative rRNA methylase [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 174
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 95/183 (51%), Gaps = 25/183 (13%)
Query: 88 W-KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
W K + K VVD TCGNGYDT + + AG VY +DIQ EA+ S+ L +
Sbjct: 10 WMKQFLNKDSIVVDMTCGNGYDTHFL------ANHAGHVYAIDIQEEAILSSKQLNQNFS 63
Query: 147 SKAEKGLVKLFNMCHSRM--EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEA 204
+ + + HSR+ EE P + A+ +NLGYLP DKS+ITTS TT +L+
Sbjct: 64 N------ITYIHSDHSRVNFEEKAPFTGAI----YNLGYLPRSDKSIITTSHTTVSSLKN 113
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
+L + + Y+ H GG EE EAV + S ++ + +++ PL+PV +
Sbjct: 114 IFPLLT--DFLVIACYLKHEGGYEEYEAVRDYIISTNM-PYETLEYET---PLSPVTFLV 167
Query: 265 FKR 267
+ R
Sbjct: 168 YLR 170
>gi|329117650|ref|ZP_08246367.1| putative rRNA methylase [Streptococcus parauberis NCFD 2020]
gi|326908055|gb|EGE54969.1| putative rRNA methylase [Streptococcus parauberis NCFD 2020]
gi|456370344|gb|EMF49240.1| SAM-dependent methyltransferase, MraW methylase family
[Streptococcus parauberis KRS-02109]
gi|457096060|gb|EMG26531.1| SAM-dependent methyltransferase, MraW methylase family
[Streptococcus parauberis KRS-02083]
Length = 180
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
K V+ + VDAT GNG DTL +V + V DIQ EAL +T LD
Sbjct: 13 KEVLTQDSLFVDATMGNGNDTLYFAPLVKE------VIAFDIQEEALLATRKKLDAIHVN 66
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
V+L H +++ K FNLGYLP +K ++T +TT +ALE
Sbjct: 67 N----VQLILDGHQHVDKYTDKIDGA---IFNLGYLPSANKDLVTKPDTTILALEKIIER 119
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L+ GG I+++VY GH GG+EE +A+ A+ L+ + +Q +N+ P + + ++
Sbjct: 120 LVVGGRIAIMVYYGHEGGQEERKALMAYLSKLNQKEITVMTYQAINQVNNPPYLVMIEK 178
>gi|313884623|ref|ZP_07818381.1| putative rRNA methylase [Eremococcus coleocola ACS-139-V-Col8]
gi|312620133|gb|EFR31564.1| putative rRNA methylase [Eremococcus coleocola ACS-139-V-Col8]
Length = 194
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 5/171 (2%)
Query: 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL 156
T VDAT GNG+DT +L+ + G V DIQ +AL ++ L+K + +L
Sbjct: 23 TFVDATLGNGHDTAFILQ---KPNFHGQVLAFDIQDQALTNSQDRLNKLGLDPSR--YQL 77
Query: 157 FNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216
+ H+ +E + ++ FNLGYLPGGD + T ++T A++ + L G +
Sbjct: 78 IHDSHANLEAHLTPGQKLQAAIFNLGYLPGGDHQITTQWQSTLTAIKTLAQHLDLHGQLI 137
Query: 217 MVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+VVY GHP G+ E + A S ++ ++Q LN+ P V + +R
Sbjct: 138 LVVYWGHPQGQVESTKLLAEVSQWSQTEFQVLQYQFLNQANQPPYVIVIER 188
>gi|374993315|ref|YP_004968814.1| S-adenosylmethionine-dependent methyltransferase [Desulfosporosinus
orientis DSM 765]
gi|357211681|gb|AET66299.1| putative S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Desulfosporosinus orientis
DSM 765]
Length = 191
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 13/184 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + + + KGD VD T GNG DT ++ +V +E G VY DIQ +AL +T L+
Sbjct: 12 AKKICQRKLSKGDIAVDCTMGNGNDTALLCSLVGEE---GRVYAFDIQEQALLNTKKRLE 68
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
L+ H +++ + V+L+ FNLGYLP G+ + T SETT A+
Sbjct: 69 GLNFLERATLIL---DGHEKIDRYI--KDKVQLIIFNLGYLPRGNHEITTRSETTIEAIG 123
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDW---ICCKFQMLNRPLAPV 260
+L P G+I +++Y GH G+ E + F +L+ ++ C +N P P
Sbjct: 124 KCLELLRPNGVILLIIYPGHENGKLEKVDIHEFTSALNQKEFNVVQVCFTNQINNP--PE 181
Query: 261 LVFL 264
L+++
Sbjct: 182 LIYI 185
>gi|384460794|ref|YP_005673389.1| hypothetical protein CBF_0395 [Clostridium botulinum F str. 230613]
gi|295317811|gb|ADF98188.1| conserved hypothetical protein [Clostridium botulinum F str.
230613]
Length = 188
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A + ++ ++ GD VVD T G G+DT+++ +V ++ G V DIQ EA+ T L
Sbjct: 13 AKYICENTLKFGDIVVDCTLGKGHDTILLANLVGNK---GKVISFDIQKEAINKTKEKLR 69
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ K + L N H ++ + + V+L FNLGYLP D ++ T +ETT AL+
Sbjct: 70 EFDYKN----ITLINDGHENLDRHIQEK--VKLFIFNLGYLPRKDHNITTKAETTIKALK 123
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
A ++L G++ +V+Y GH G+EE A+E F L + K +N+ P L+
Sbjct: 124 KALKLLDDNGIVLLVIYYGHESGKEEKAALEKFTSKLDQKVYNVMKNSFINQVNNPPLL 182
>gi|340362435|ref|ZP_08684820.1| rRNA methyltransferase [Neisseria macacae ATCC 33926]
gi|339887443|gb|EGQ76999.1| rRNA methyltransferase [Neisseria macacae ATCC 33926]
Length = 184
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 17/181 (9%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
K ++ +D T GNG DTLM+ + + S G V+ D+Q +AL +T L++
Sbjct: 15 KQALKPDARALDGTAGNGNDTLMLARSIG---SGGKVWAFDVQEQALANTRMRLEEA-GM 70
Query: 149 AEKGLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
A++ V+L H + + P AV FN G+LPGGDKS T + T+ A
Sbjct: 71 ADR--VELILDGHENLATHIREPLDAAV----FNFGWLPGGDKSCTTEAATSIRA----- 119
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
+L GGL V+Y GH GR E +A+E +A+ L D++ ++ +NR P + F+
Sbjct: 120 SLLKTGGLAVAVLYPGHEAGRHEAQAIEDWAQRLPQDEFAVLRYGFINRRNRPPYLLAFE 179
Query: 267 R 267
+
Sbjct: 180 K 180
>gi|365131427|ref|ZP_09341839.1| hypothetical protein HMPREF1032_02918 [Subdoligranulum sp.
4_3_54A2FAA]
gi|363618796|gb|EHL70137.1| hypothetical protein HMPREF1032_02918 [Subdoligranulum sp.
4_3_54A2FAA]
Length = 325
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 8/187 (4%)
Query: 82 IAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSL 141
+ A+ + VR G +DAT GNG+DTL + ++V +AG V D+Q +A+++T++
Sbjct: 144 VVAHAFLRTHVRPGAFALDATAGNGHDTLFLCRLV---GAAGRVLAFDVQPQAVENTNAR 200
Query: 142 LDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
L + + G L + H+ + + V FNLGYLPGGD V TT + A
Sbjct: 201 L-RENGCGQVGRAVLDS--HANLAAYAAPGS-VDAAVFNLGYLPGGDHGVFTTPGVSVPA 256
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPV 260
+ A +L PGG++++ VY G P G E +AV AF L + + RP P+
Sbjct: 257 MRTALELLRPGGVMTVCVYYGGPQGMAEKDAVLAFLTGLPPEGYRVSVRDFSGRPGCPPI 316
Query: 261 LVFLFKR 267
V + KR
Sbjct: 317 PVCIEKR 323
>gi|167759369|ref|ZP_02431496.1| hypothetical protein CLOSCI_01716 [Clostridium scindens ATCC 35704]
gi|336420881|ref|ZP_08601042.1| hypothetical protein HMPREF0993_00419 [Lachnospiraceae bacterium
5_1_57FAA]
gi|167662926|gb|EDS07056.1| putative rRNA methylase [Clostridium scindens ATCC 35704]
gi|336003900|gb|EGN33976.1| hypothetical protein HMPREF0993_00419 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 187
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 17/187 (9%)
Query: 88 WKH-VVRK----GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142
W H ++R G +DAT GNG DTLM+ + AG V DIQ AL++T LL
Sbjct: 9 WCHEIIRSQAAAGGFYIDATMGNGKDTLMLCTLAG---KAGSVLAFDIQDTALQATQRLL 65
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL 202
+ L+K H M+ + TA ++ FN GYLPGG + T + T+ A+
Sbjct: 66 KEQGCLERASLIK---DGHEHMDLYAGEGTA-DVICFNFGYLPGGSHHIATRATTSVEAI 121
Query: 203 EAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDW---ICCKFQMLNRPLAP 259
+ +IL GG++S+ +Y G G EE E + + R L ++ + + N P P
Sbjct: 122 QKGLKILKKGGMMSLCIYSGGDTGFEEKERILDYLRELPAREYTVIVNAYYNRANNP--P 179
Query: 260 VLVFLFK 266
+ F+FK
Sbjct: 180 IPAFIFK 186
>gi|306831998|ref|ZP_07465153.1| rRNA methylase [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|306834120|ref|ZP_07467240.1| rRNA methylase [Streptococcus bovis ATCC 700338]
gi|325978945|ref|YP_004288661.1| rRNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
gi|336064846|ref|YP_004559705.1| putative rRNA methylase [Streptococcus pasteurianus ATCC 43144]
gi|304423693|gb|EFM26839.1| rRNA methylase [Streptococcus bovis ATCC 700338]
gi|304425924|gb|EFM29041.1| rRNA methylase [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325178873|emb|CBZ48917.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
[Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
gi|334283046|dbj|BAK30619.1| putative rRNA methylase [Streptococcus pasteurianus ATCC 43144]
Length = 187
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 12/169 (7%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VDAT GNG DT + + A VY D+Q +AL+ST L+K E L
Sbjct: 24 VDATMGNGNDTAFLAQ------HAKEVYAFDVQEQALQSTKERLEKQ----EIHNAHLIL 73
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H ++ V + +R FNLGYLP DK+VIT +TT +A+E L GG ++++
Sbjct: 74 DGHQHIDHYV--NQPIRAAIFNLGYLPSADKTVITKPDTTLIAVEKILEKLEVGGRLAIM 131
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+Y GH GG E +AV + L + +Q LN+ P + + ++
Sbjct: 132 IYYGHEGGDMEKDAVLEYVNQLDQRLFTAMLYQPLNQINQPPFLVMIEK 180
>gi|450115043|ref|ZP_21863702.1| hypothetical protein SMU83_02029 [Streptococcus mutans ST1]
gi|449228512|gb|EMC27877.1| hypothetical protein SMU83_02029 [Streptococcus mutans ST1]
Length = 181
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 18/181 (9%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA 149
V+ K + +DAT GNG DT+ + + A VY D+Q +AL T L+
Sbjct: 15 QVLDKNNIAIDATMGNGNDTVFLSHL------AKKVYAFDVQEQALIKTREKLENLGFNN 68
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L H +++ V +R FNLGYLP DK++IT +TT LEA +IL
Sbjct: 69 ----VQLILDGHQTIDKYV--DGPIRAAIFNLGYLPSADKTIITKPDTT---LEAIGKIL 119
Query: 210 IP---GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
GG IS+++Y GH GG +E +AV F + L + +Q LN+ P + + +
Sbjct: 120 DRLEVGGRISIMIYYGHEGGDKEKDAVLNFVKELDQQHFTVMLYQPLNQINTPPFLVMIE 179
Query: 267 R 267
+
Sbjct: 180 K 180
>gi|153854162|ref|ZP_01995470.1| hypothetical protein DORLON_01461 [Dorea longicatena DSM 13814]
gi|149753211|gb|EDM63142.1| putative rRNA methylase [Dorea longicatena DSM 13814]
Length = 190
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 95/189 (50%), Gaps = 8/189 (4%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
IT + + + +G +DAT G G DTL + ++ ++ G V DIQ EAL T
Sbjct: 9 ITYWCHEIIRSQAEEGGYYIDATMGKGNDTLFLCELAGEK---GKVLAFDIQQEALDVTK 65
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTK 199
LL KT K + +L H M+ K +A ++ FN GYLPGGD ++ TT T+
Sbjct: 66 ELL-KTHGKEMQ--AELILDGHEHMDRYAGKESA-DVICFNFGYLPGGDHNLATTYRTSI 121
Query: 200 MALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
A+ IL GG++S+ +Y G G EE E + + ++L ++ + NR P
Sbjct: 122 EAIGKGLGILKHGGMMSLCIYSGGDTGFEEKEKILQYVKALPGKEYTVIVNEYYNRKNCP 181
Query: 260 VL-VFLFKR 267
+ VF+FK
Sbjct: 182 PMPVFIFKE 190
>gi|402571223|ref|YP_006620566.1| rRNA methylase [Desulfosporosinus meridiei DSM 13257]
gi|402252420|gb|AFQ42695.1| Putative rRNA methylase [Desulfosporosinus meridiei DSM 13257]
Length = 188
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 83/151 (54%), Gaps = 8/151 (5%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
GD VD T GNG DT + +V ++ G VY DIQ EA+ +T L + A +V
Sbjct: 23 GDIAVDCTMGNGNDTEFLCSLVGEK---GKVYAFDIQEEAVITTRKRLQELNLLARTEIV 79
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGL 214
H +++ + + V LV FNLGYLP G+ ++ T ETT A++ + +L P G+
Sbjct: 80 L---DGHQNIDKYIKGN--VELVIFNLGYLPKGNHAITTKKETTIEAVQKSMGLLKPNGI 134
Query: 215 ISMVVYVGHPGGREELEAVEAFARSLSVDDW 245
I +VVY GH G+ E EA+ F +++ ++
Sbjct: 135 ILIVVYSGHENGKLEKEALINFTTTINQKEY 165
>gi|261379857|ref|ZP_05984430.1| putative rRNA methylase [Neisseria subflava NJ9703]
gi|284797554|gb|EFC52901.1| putative rRNA methylase [Neisseria subflava NJ9703]
Length = 189
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 12/178 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + + ++ G +DAT GNG+DTL++ + V + G V+ D+Q +AL T L
Sbjct: 10 AHSLLQQALKAGGRALDATAGNGHDTLLLAQSVGE---TGRVWAFDVQLKALAQTQGRLK 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA 201
+ G V L + H + + P AV FN G+LPGGDKS T + ++ A
Sbjct: 67 EN---GVDGRVALIHDGHENLLSYIDEPLDAAV----FNFGWLPGGDKSCTTEAASSIRA 119
Query: 202 LEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
L +L GGL V+Y GH GR E EA+ + +L + + ++ +NR AP
Sbjct: 120 LTDTLGLLKEGGLAVAVLYPGHEAGRIEAEAIVQWTETLPQEAFAVLRYGFVNRRNAP 177
>gi|333905591|ref|YP_004479462.1| rRNA methylase [Streptococcus parauberis KCTC 11537]
gi|333120856|gb|AEF25790.1| rRNA methylase [Streptococcus parauberis KCTC 11537]
Length = 180
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 89/179 (49%), Gaps = 13/179 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
K V+ + VDAT GNG DTL +V + V DIQ EAL +T LD
Sbjct: 13 KEVLTQDSLFVDATMGNGNDTLYFAPLVKE------VIAFDIQEEALLATRKKLDAIHVN 66
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
V+L H +++ K FNLGYLP +K ++T +TT +ALE
Sbjct: 67 N----VQLILDGHQHVDKYTDKIDGA---IFNLGYLPSANKDLVTKPDTTILALEKIIER 119
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L GG I+++VY GH GG+EE +A+ A+ L+ + +Q +N+ P + + ++
Sbjct: 120 LAVGGRIAIMVYYGHEGGQEERKALMAYLSKLNQKEITVMTYQAINQVNNPPYLVMIEK 178
>gi|290579949|ref|YP_003484341.1| hypothetical protein SmuNN2025_0423 [Streptococcus mutans NN2025]
gi|449947464|ref|ZP_21807409.1| hypothetical protein SMU33_01928 [Streptococcus mutans 11SSST2]
gi|449970268|ref|ZP_21813728.1| hypothetical protein SMU41_04676 [Streptococcus mutans 2VS1]
gi|450007204|ref|ZP_21827639.1| hypothetical protein SMU57_07338 [Streptococcus mutans NMT4863]
gi|450028976|ref|ZP_21832486.1| hypothetical protein SMU61_02534 [Streptococcus mutans G123]
gi|450035604|ref|ZP_21835071.1| hypothetical protein SMU62_05729 [Streptococcus mutans M21]
gi|450058766|ref|ZP_21843181.1| hypothetical protein SMU69_07415 [Streptococcus mutans NLML4]
gi|450066650|ref|ZP_21846087.1| hypothetical protein SMU72_02768 [Streptococcus mutans NLML9]
gi|450092434|ref|ZP_21856000.1| hypothetical protein SMU78_03149 [Streptococcus mutans W6]
gi|450110054|ref|ZP_21861880.1| hypothetical protein SMU82_02596 [Streptococcus mutans SM6]
gi|450149852|ref|ZP_21876309.1| hypothetical protein SMU92_06702 [Streptococcus mutans 14D]
gi|450165285|ref|ZP_21881790.1| hypothetical protein SMU95_05022 [Streptococcus mutans B]
gi|450180883|ref|ZP_21887492.1| hypothetical protein SMU99_04242 [Streptococcus mutans 24]
gi|254996848|dbj|BAH87449.1| hypothetical protein [Streptococcus mutans NN2025]
gi|449168649|gb|EMB71457.1| hypothetical protein SMU33_01928 [Streptococcus mutans 11SSST2]
gi|449173541|gb|EMB76107.1| hypothetical protein SMU41_04676 [Streptococcus mutans 2VS1]
gi|449186659|gb|EMB88479.1| hypothetical protein SMU57_07338 [Streptococcus mutans NMT4863]
gi|449194940|gb|EMB96278.1| hypothetical protein SMU61_02534 [Streptococcus mutans G123]
gi|449195211|gb|EMB96542.1| hypothetical protein SMU62_05729 [Streptococcus mutans M21]
gi|449203737|gb|EMC04586.1| hypothetical protein SMU69_07415 [Streptococcus mutans NLML4]
gi|449208675|gb|EMC09252.1| hypothetical protein SMU72_02768 [Streptococcus mutans NLML9]
gi|449218361|gb|EMC18375.1| hypothetical protein SMU78_03149 [Streptococcus mutans W6]
gi|449225595|gb|EMC25186.1| hypothetical protein SMU82_02596 [Streptococcus mutans SM6]
gi|449234163|gb|EMC33186.1| hypothetical protein SMU92_06702 [Streptococcus mutans 14D]
gi|449240814|gb|EMC39471.1| hypothetical protein SMU95_05022 [Streptococcus mutans B]
gi|449247731|gb|EMC46002.1| hypothetical protein SMU99_04242 [Streptococcus mutans 24]
Length = 181
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 90/181 (49%), Gaps = 18/181 (9%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA 149
V+ K +DAT GNG DT+ + + A VY D+Q +AL T L+
Sbjct: 15 QVLDKNSIAIDATMGNGNDTVFLSHL------AKKVYAFDVQEQALIKTREKLENLGFNN 68
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L H +++ V +R FNLGYLP DK++IT +TT LEA +IL
Sbjct: 69 ----VQLILDGHQTIDKYV--DGPIRAAIFNLGYLPSADKTIITKPDTT---LEAIGKIL 119
Query: 210 IP---GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
GG IS+++Y GH GG +E +AV F + L + +Q LN+ P + + +
Sbjct: 120 DRLEVGGRISIMIYYGHEGGDKEKDAVLNFVKELDQQHFTVMLYQPLNQINTPPFLVMIE 179
Query: 267 R 267
+
Sbjct: 180 K 180
>gi|418606152|ref|ZP_13169446.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU057]
gi|374409235|gb|EHQ80034.1| MraW methylase-like family protein [Staphylococcus epidermidis
VCU057]
Length = 158
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 76/151 (50%), Gaps = 12/151 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ V+DATCGNG DT + V + G VYG DIQ +A+ +T KT +
Sbjct: 18 INHNSIVIDATCGNGNDTAYFAQHVPN----GFVYGFDIQEQAILNTHK---KTKDYSN- 69
Query: 152 GLVKLFNMCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
VKL H + +P + FNLGYLP G+K ++T ETT MA+ IL
Sbjct: 70 --VKLIQSGHENAKLHIPAQHHGCIDAAIFNLGYLPKGNKEIVTKPETTIMAINEIFDIL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSL 240
G+I +V+Y GH G+ E EA+ F L
Sbjct: 128 SIEGIIILVIYHGHEEGKVEKEALLEFFTKL 158
>gi|421453081|ref|ZP_15902437.1| SAM-dependent methyltransferase [Streptococcus salivarius K12]
gi|400181390|gb|EJO15657.1| SAM-dependent methyltransferase [Streptococcus salivarius K12]
Length = 182
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 86/173 (49%), Gaps = 20/173 (11%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL-DKTTSKAEKGLVKLF 157
+DAT GNG DT + + A VY D+Q +AL+ TS L D AE L
Sbjct: 24 IDATMGNGNDTAFLAGL------AKKVYAFDVQEQALEKTSQRLSDLGIENAELILDGHE 77
Query: 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP---GGL 214
N+ H E I R FNLGYLP DKSVIT TT LEA E+IL GG
Sbjct: 78 NLDHYVTEPI-------RAAIFNLGYLPSADKSVITKPHTT---LEAIEKILDRLEVGGR 127
Query: 215 ISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+++++Y GH GG E +AV + L D+ +Q LN+ P + + ++
Sbjct: 128 LAIMIYYGHDGGDMEKDAVLEYVIGLDQRDFTAMLYQPLNQINTPPFLVMLEK 180
>gi|323341734|ref|ZP_08081967.1| SAM-dependent methyltransferase [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322464159|gb|EFY09352.1| SAM-dependent methyltransferase [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 174
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 92/176 (52%), Gaps = 25/176 (14%)
Query: 88 W-KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146
W K + K VVD TCGNGYDT + + AG VY +DIQ EA+ S+ L +
Sbjct: 10 WMKQFLNKDSIVVDMTCGNGYDTHFLA------NHAGHVYAIDIQEEAILSSKQLNQNFS 63
Query: 147 SKAEKGLVKLFNMCHSRM--EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEA 204
+ + + HSR+ EE P + A+ +NLGYLP DKS+ITTS TT +L+
Sbjct: 64 N------ITYIHSDHSRVNFEEKAPFTGAI----YNLGYLPRSDKSIITTSHTTVSSLKN 113
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPV 260
+L + + Y+ H GG EE EAV + S ++ + +++ PL+PV
Sbjct: 114 IFPLLT--DFLVIACYLKHEGGYEEYEAVRDYIISTNM-PYETLEYET---PLSPV 163
>gi|340357492|ref|ZP_08680107.1| rRNA methyltransferase [Sporosarcina newyorkensis 2681]
gi|339617556|gb|EGQ22179.1| rRNA methyltransferase [Sporosarcina newyorkensis 2681]
Length = 200
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 95/177 (53%), Gaps = 12/177 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V+ G+ VVDAT GNG DTL + ++V D +G V+ DIQ +AL +T L
Sbjct: 21 VQPGEMVVDATAGNGNDTLFLAELVGD---SGKVFAFDIQQQALDTTRQHLGDLA----- 72
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLP-GGDKSVITTSETTKMALEAAERILI 210
G L H + + V S + FNLGYLP D+S+IT +T AL+A +L
Sbjct: 73 GRTSLVLDGHENVRQYV--SGEIGGAMFNLGYLPYSEDQSIITKPSSTIAALDALLGLLK 130
Query: 211 PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFK 266
G+I++ VY GH GG EE +A+ + ++L D ++++LN R P L+ L K
Sbjct: 131 KTGIITITVYDGHEGGSEERDALLEYVKTLHQGDVHAIRYELLNQRRNPPFLIALEK 187
>gi|449981012|ref|ZP_21817552.1| hypothetical protein SMU50_04853 [Streptococcus mutans 5SM3]
gi|449176200|gb|EMB78559.1| hypothetical protein SMU50_04853 [Streptococcus mutans 5SM3]
Length = 181
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 18/181 (9%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA 149
V+ K +DAT GNG DT+ + + A VY D+Q +AL T L+
Sbjct: 15 QVLDKNSIAIDATMGNGNDTVFLSHL------AKKVYAFDVQEQALIKTREKLENLGFNN 68
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
++L H +++ V +R FNLGYLP DK++IT +TT LEA +IL
Sbjct: 69 ----IQLILDGHQTIDKYV--DGPIRAAIFNLGYLPSADKTIITKPDTT---LEAIGKIL 119
Query: 210 IP---GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
GG IS+++Y GH GG +E +AV F + L + +Q LN+ P + + +
Sbjct: 120 DRLEVGGRISIMIYYGHEGGDKEKDAVLNFVKELDQQHFTVMLYQPLNQINTPPFLVMIE 179
Query: 267 R 267
+
Sbjct: 180 K 180
>gi|288905978|ref|YP_003431200.1| rRNA methylase [Streptococcus gallolyticus UCN34]
gi|386338421|ref|YP_006034590.1| putative rRNA methylase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288732704|emb|CBI14278.1| Putative rRNA methylase [Streptococcus gallolyticus UCN34]
gi|334281057|dbj|BAK28631.1| putative rRNA methylase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 187
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 12/169 (7%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VDAT GNG DT + + + VY D+Q +AL+ST L+K E L
Sbjct: 24 VDATMGNGNDTAFLAQHTKE------VYAFDVQEQALQSTKERLEKQ----EIHNAHLIL 73
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H ++ V + +R FNLGYLP DK+VIT +TT +A+E + L GG ++++
Sbjct: 74 DGHQHIDHYV--NQPIRAAIFNLGYLPSADKTVITKPDTTLIAVEKILKKLEVGGRLAIM 131
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+Y GH GG E + V + L + +Q LN+ P + + ++
Sbjct: 132 IYYGHEGGDMEKDVVLEYVNQLDQRLFTAMLYQPLNQINQPPFLVMIEK 180
>gi|363890110|ref|ZP_09317455.1| hypothetical protein HMPREF9628_01897 [Eubacteriaceae bacterium
CM5]
gi|363894679|ref|ZP_09321750.1| hypothetical protein HMPREF9629_02061 [Eubacteriaceae bacterium
ACC19a]
gi|361961767|gb|EHL14949.1| hypothetical protein HMPREF9629_02061 [Eubacteriaceae bacterium
ACC19a]
gi|361966004|gb|EHL18954.1| hypothetical protein HMPREF9628_01897 [Eubacteriaceae bacterium
CM5]
Length = 188
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VDAT GNG DT M+++ + VY DIQ +A+ S + K ++ N
Sbjct: 25 VDATLGNGNDTNMIIETFGRDVK---VYSFDIQEKAIISAKENIKNEYHKN----IEFIN 77
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H M++ V +S LV FNLGYLP D + T TT A+E A IL P GLIS++
Sbjct: 78 DSHEYMDKYVKESPD--LVMFNLGYLPKSDHVIKTNPYTTLHAMEKAIEILKPNGLISIM 135
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLFK 266
Y+GH RE +E + R L ++ +N+ AP LV + K
Sbjct: 136 FYIGHDNAREYKTLLE-YVRILDARNFKAIHVNPINQDENAPKLVIIQK 183
>gi|228477135|ref|ZP_04061773.1| SAM-dependent methyltransferase [Streptococcus salivarius SK126]
gi|228251154|gb|EEK10325.1| SAM-dependent methyltransferase [Streptococcus salivarius SK126]
Length = 182
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 85/173 (49%), Gaps = 21/173 (12%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL-DKTTSKAEKGLVKLF 157
VDAT GNG DT + + A VY D+Q +AL+ T L D AE L
Sbjct: 24 VDATMGNGNDTAFLAGL------AKKVYAFDVQEQALEKTRQRLSDLEIENAELILDGHE 77
Query: 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP---GGL 214
N+ H E I R FNLGYLP DKSVIT TT LEA E+IL GG
Sbjct: 78 NLDHYVTEPI-------RAAIFNLGYLPSADKSVITKPHTT---LEAIEKILDRLEVGGR 127
Query: 215 ISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFK 266
+++++Y GH GG E +AV + L D+ +Q LN+ P LV L K
Sbjct: 128 LAIMIYYGHDGGDMEKDAVLEYVIGLDQRDFTAMLYQPLNQINTPPFLVMLEK 180
>gi|403384408|ref|ZP_10926465.1| MraW methylase family SAM-dependent methyltransferase [Kurthia sp.
JC30]
Length = 200
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 18/178 (10%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
GD +DAT GNGYDTL + ++V D G V+ D+Q +AL +T + L E G+
Sbjct: 21 GDVAIDATAGNGYDTLYLTELVGD---TGHVFAFDVQQQALDATKARL------KEHGVF 71
Query: 155 KLFNMC---HSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
+ + H + V P AV FNLGYLPG D ++ T ++TT A++A +
Sbjct: 72 ERTTLILDGHENFAKHVDEPIGGAV----FNLGYLPGADHTLTTQAQTTITAIDAMLEQM 127
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG++ +VVY GH GG+EE + V + L ++ LN+ P + ++
Sbjct: 128 KIGGIVVLVVYHGHEGGKEERDNVLQYVERLPQKQVHVLRYDFLNQKNDPPFIVALEK 185
>gi|167628430|ref|YP_001678929.1| sam-dependent methyltransferase [Heliobacterium modesticaldum Ice1]
gi|167591170|gb|ABZ82918.1| sam-dependent methyltransferase, putative [Heliobacterium
modesticaldum Ice1]
Length = 243
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 98/220 (44%), Gaps = 45/220 (20%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL------- 142
V+ GD +DAT GNG+DTL + + V G ++ DIQ A+ +T+ L
Sbjct: 17 EVLEPGDFAIDATAGNGHDTLFLARQVL---PGGDLWAFDIQEAAIDATARRLTEAGLAD 73
Query: 143 -----------------------------DKTTSKAEKGL-----VKLFNMCHSRMEEIV 168
D+++ E ++L + HS+M ++
Sbjct: 74 RFEIDEPFSASKAASKTAGRNVLARMAAPDQSSPPEEAAAAPRCPIRLIHCDHSQMGSLL 133
Query: 169 PKSTAV-RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGR 227
T + FNLGYLPGGD +++T +E+T AL+A L GG + +VVYVGH G
Sbjct: 134 QGYTKQPKAAVFNLGYLPGGDHALVTRAESTVSALDALAAALAEGGRLVVVVYVGHAGAE 193
Query: 228 EELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
E+ AV+ + R L W Q NR P V + ++
Sbjct: 194 AEVTAVDRWWRQLPPQRWDTVAVQFPNRTGRPPYVLVAEK 233
>gi|312863858|ref|ZP_07724096.1| putative rRNA methylase [Streptococcus vestibularis F0396]
gi|311101394|gb|EFQ59599.1| putative rRNA methylase [Streptococcus vestibularis F0396]
Length = 182
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VDAT GNG DT + + A VY D+Q +AL+ T L S E +L
Sbjct: 24 VDATMGNGNDTAFLAGL------AKKVYAFDVQEQALEKTRQRL----SDLEIENAQLIL 73
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP---GGLI 215
H ++ V + +R FNLGYLP DKSVIT TT LEA E+IL GG +
Sbjct: 74 DGHENLDRYV--TEPIRAAIFNLGYLPSADKSVITKPHTT---LEAIEKILDRLEVGGRL 128
Query: 216 SMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFK 266
++++Y GH GG E +AV + L D+ +Q LN+ P LV L K
Sbjct: 129 AIMIYYGHDGGDMEKDAVLEYVIGLDQRDFTAMLYQPLNQINTPPFLVMLEK 180
>gi|313114641|ref|ZP_07800148.1| acetyltransferase, GNAT family [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310623044|gb|EFQ06492.1| acetyltransferase, GNAT family [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 288
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 86/154 (55%), Gaps = 8/154 (5%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
+DATCGNG DT + + A E G V G D+Q A+ ST L++ A + +L
Sbjct: 125 IDATCGNGGDTAFLCGITAPE---GKVVGFDVQEAAIASTRKHLEQLGVPAAR--YELHC 179
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H+ + ++V TA V FN G+LPG D +V +T++++ AL+AA + PGG++S +
Sbjct: 180 QSHADLLQVVQPGTA-DAVMFNFGWLPGADHAVFSTAQSSIPALQAALEAVRPGGVVSAI 238
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDW--ICCKF 250
+Y G G +E + V + R+L + + + C F
Sbjct: 239 LYSGQVIGTDEKQTVLEYLRALPLKSFTVLVCDF 272
>gi|387784770|ref|YP_006070853.1| putative rRNA methylase (SAM-dependent methyltransferase
superfamily) [Streptococcus salivarius JIM8777]
gi|338745652|emb|CCB96018.1| putative rRNA methylase (SAM-dependent methyltransferase
superfamily) [Streptococcus salivarius JIM8777]
Length = 182
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VDAT GNG DT + + A VY D+Q +AL+ T L S E +L
Sbjct: 24 VDATMGNGNDTAFLAGL------AKKVYAFDVQEQALEKTRQRL----SDLEIENAELIL 73
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP---GGLI 215
H ++ V + +R FNLGYLP DKSVIT TT LEA E+IL GG +
Sbjct: 74 DGHENLDRYV--TEPIRAAIFNLGYLPSADKSVITKPHTT---LEAIEKILDRLEVGGRL 128
Query: 216 SMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFK 266
++++Y GH GG E +AV + L D+ +Q LN+ P LV L K
Sbjct: 129 AIMIYYGHDGGDMEKDAVLEYVIGLDQRDFTAMLYQPLNQINTPPFLVMLEK 180
>gi|449881893|ref|ZP_21784658.1| hypothetical protein SMU103_04351 [Streptococcus mutans SA38]
gi|449250702|gb|EMC48751.1| hypothetical protein SMU103_04351 [Streptococcus mutans SA38]
Length = 181
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 86/173 (49%), Gaps = 18/173 (10%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA 149
V+ K +DAT GNG DT+ + + A VY D+Q +AL T L+
Sbjct: 15 QVLDKNSIAIDATMGNGNDTVFLSHL------AKKVYAFDVQEQALIKTREKLENLGFNN 68
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L H +++ V +R FNLGYLP DK++IT +TT LEA +IL
Sbjct: 69 ----VQLILDGHQIIDKYV--DGPIRAAIFNLGYLPSADKTIITKPDTT---LEAIGKIL 119
Query: 210 IP---GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
GG IS+++Y GH GG +E +AV F + L + +Q LN+ P
Sbjct: 120 DRLEVGGRISIMIYYGHEGGDKEKDAVLNFVKELDQQHFTVMLYQPLNQINTP 172
>gi|429766807|ref|ZP_19299049.1| putative rRNA methylase [Clostridium celatum DSM 1785]
gi|429182953|gb|EKY24029.1| putative rRNA methylase [Clostridium celatum DSM 1785]
Length = 179
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 18/175 (10%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
K + +DAT GNGYD + S+ VY DIQ EA ++ S D
Sbjct: 22 KKNVAIDATLGNGYDCDFL------SSNFKKVYAFDIQKEACENYSIKNDN--------- 66
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
V + N H + E+ + + V + +NLGYLPGG+K++ T S T+ ++++ +L GG
Sbjct: 67 VIVINDSHHKFEDYIKEQ--VDCIIYNLGYLPGGEKTITTKSNTSLISIQKGLELLASGG 124
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFLFKR 267
++++ +Y GH G+ E + + ++L+ + + LNR AP+LV + K+
Sbjct: 125 MMTIAIYRGHDEGKIEENCIIGYLKTLNKKHYGVMIHEYLNRASTAPLLVVIEKK 179
>gi|322516162|ref|ZP_08069095.1| rRNA methylase [Streptococcus vestibularis ATCC 49124]
gi|322125338|gb|EFX96693.1| rRNA methylase [Streptococcus vestibularis ATCC 49124]
Length = 182
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VDAT GNG DT + + A +Y D+Q +AL+ T L S E +L
Sbjct: 24 VDATMGNGNDTAFLAGL------AKKIYAFDVQEQALEKTRQRL----SDLEIENAQLIL 73
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP---GGLI 215
H ++ V + +R FNLGYLP DKSVIT TT LEA E+IL GG +
Sbjct: 74 DGHENLDRYV--TEPIRAAIFNLGYLPSADKSVITKPHTT---LEAIEKILDRLEVGGRL 128
Query: 216 SMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFK 266
++++Y GH GG E +AV + L D+ +Q LN+ P LV L K
Sbjct: 129 AIMIYYGHDGGDMEKDAVLEYVIGLDQRDFTAMLYQPLNQINTPPFLVMLEK 180
>gi|397650292|ref|YP_006490819.1| hypothetical protein SMUGS5_07670 [Streptococcus mutans GS-5]
gi|449893440|ref|ZP_21788732.1| hypothetical protein SMU105_05688 [Streptococcus mutans SF12]
gi|449896397|ref|ZP_21789670.1| hypothetical protein SMU107_00707 [Streptococcus mutans R221]
gi|450012688|ref|ZP_21829730.1| hypothetical protein SMU58_08455 [Streptococcus mutans A19]
gi|450024225|ref|ZP_21831106.1| hypothetical protein SMU60_05542 [Streptococcus mutans U138]
gi|450071386|ref|ZP_21848120.1| hypothetical protein SMU74_03042 [Streptococcus mutans M2A]
gi|392603861|gb|AFM82025.1| hypothetical protein SMUGS5_07670 [Streptococcus mutans GS-5]
gi|449188128|gb|EMB89858.1| hypothetical protein SMU58_08455 [Streptococcus mutans A19]
gi|449192203|gb|EMB93633.1| hypothetical protein SMU60_05542 [Streptococcus mutans U138]
gi|449212406|gb|EMC12774.1| hypothetical protein SMU74_03042 [Streptococcus mutans M2A]
gi|449255871|gb|EMC53711.1| hypothetical protein SMU105_05688 [Streptococcus mutans SF12]
gi|449262332|gb|EMC59785.1| hypothetical protein SMU107_00707 [Streptococcus mutans R221]
Length = 181
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 18/181 (9%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA 149
V+ K +D T GNG DT+ + + A VY D+Q +AL T L+
Sbjct: 15 QVLDKNSIAIDTTMGNGNDTVFLSHL------AKKVYAFDVQEQALIKTREKLENLGFNN 68
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L H +++ V +R FNLGYLP DK++IT +TT LEA +IL
Sbjct: 69 ----VQLILDGHQTIDKYV--DGPIRAAIFNLGYLPSADKTIITKPDTT---LEAIGKIL 119
Query: 210 IP---GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
GG IS+++Y GH GG +E +AV F + L + +Q LN+ P + + +
Sbjct: 120 DRLEVGGRISIMIYYGHEGGDKEKDAVLNFVKELDQQHFTVMLYQPLNQINTPPFLVMIE 179
Query: 267 R 267
+
Sbjct: 180 K 180
>gi|421558666|ref|ZP_16004544.1| putative rRNA methyltransferase [Neisseria meningitidis 92045]
gi|402337409|gb|EJU72657.1| putative rRNA methyltransferase [Neisseria meningitidis 92045]
Length = 188
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 9/146 (6%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
+G +D T GNG+DTL + + G V+ DIQ +AL T L + +
Sbjct: 20 EGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALSRTRCRLKEARYEN---- 72
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
V+L H +++ V S + FN G+LPGGDKS+ T +ET+ AL A +L GG
Sbjct: 73 VQLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTHTETSIPALCATLSLLKEGG 130
Query: 214 LISMVVYVGHPGGREELEAVEAFARS 239
++ V+Y GH G++E EA+E +A +
Sbjct: 131 MLIAVLYPGHENGKQEAEAIEQWANN 156
>gi|50913688|ref|YP_059660.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS10394]
gi|94987946|ref|YP_596047.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS9429]
gi|94991830|ref|YP_599929.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS2096]
gi|50902762|gb|AAT86477.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS10394]
gi|94541454|gb|ABF31503.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS9429]
gi|94543328|gb|ABF33376.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS10270]
gi|94545338|gb|ABF35385.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS2096]
Length = 193
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 101 ATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV--KLFN 158
AT GNG DT + ++ A VY D+Q +A++ TS L A+ GL+ +L
Sbjct: 35 ATMGNGNDTAFLAQL------AKKVYAFDVQEQAIRKTSERL------AQLGLLNAELIL 82
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H +++ V + VR FNLGYLP DKS+IT TT AL +L+ GG I+++
Sbjct: 83 AGHEAVDQYV--TEPVRAAIFNLGYLPSADKSIITLPNTTLQALSKLLTLLMVGGRIAIM 140
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
VY GH GG E +A+ F + L +Q LN+ P + + ++
Sbjct: 141 VYYGHDGGSLEKDALLDFVKQLDQRKVSAMLYQPLNQVNTPPFLIMLEK 189
>gi|322373579|ref|ZP_08048115.1| putative rRNA methylase [Streptococcus sp. C150]
gi|321278621|gb|EFX55690.1| putative rRNA methylase [Streptococcus sp. C150]
Length = 182
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 89/182 (48%), Gaps = 21/182 (11%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL-DKTTSK 148
V+ G VDAT GNG DT + + A VY D+Q +AL+ TS L D
Sbjct: 15 QVLDDGSIAVDATMGNGNDTAFLAGL------AKKVYAFDVQEQALEKTSQRLSDLKIDN 68
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
AE L H ++ V + +R FNLGYLP DK+VIT TT LEA E+I
Sbjct: 69 AE-----LILDGHENLDRYV--TEPIRAAIFNLGYLPSADKTVITKPHTT---LEAIEKI 118
Query: 209 LIP---GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFL 264
L GG +++++Y GH GG E +AV + L + +Q LN+ P LV L
Sbjct: 119 LDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLVML 178
Query: 265 FK 266
K
Sbjct: 179 EK 180
>gi|56807821|ref|ZP_00365666.1| COG0500: SAM-dependent methyltransferases [Streptococcus pyogenes
M49 591]
gi|209558871|ref|YP_002285343.1| hypothetical protein Spy49_0310 [Streptococcus pyogenes NZ131]
gi|386362177|ref|YP_006071508.1| rRNA methylase [Streptococcus pyogenes Alab49]
gi|417857459|ref|ZP_12502518.1| SAM-dependent methyltransferase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|209540072|gb|ACI60648.1| Conserved hypothetical protein [Streptococcus pyogenes NZ131]
gi|350276586|gb|AEQ23954.1| rRNA methylase [Streptococcus pyogenes Alab49]
gi|387934414|gb|EIK42527.1| SAM-dependent methyltransferase [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 184
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 101 ATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV--KLFN 158
AT GNG DT + ++ A VY D+Q +A++ TS L A+ GL+ +L
Sbjct: 26 ATMGNGNDTAFLAQL------AKKVYAFDVQEQAIRKTSERL------AQLGLLNAELIL 73
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H +++ V + VR FNLGYLP DKS+IT TT AL +L+ GG I+++
Sbjct: 74 AGHEAVDQYV--TEPVRAAIFNLGYLPSADKSIITLPNTTLQALSKLLTLLMVGGRIAIM 131
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
VY GH GG E +A+ F + L +Q LN+ P + + ++
Sbjct: 132 VYYGHDGGSLEKDALLDFVKQLDQRKVSAMLYQPLNQVNTPPFLIMLEK 180
>gi|418018517|ref|ZP_12658073.1| SAM-dependent methyltransferase [Streptococcus salivarius M18]
gi|345527366|gb|EGX30677.1| SAM-dependent methyltransferase [Streptococcus salivarius M18]
Length = 182
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VDAT GNG DT + + A VY D+Q +AL+ T L S E +L
Sbjct: 24 VDATMGNGNDTAFLAGL------AKKVYAFDVQEQALEKTRQRL----SDLEIENAELIL 73
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP---GGLI 215
H ++ + + +R FNLGYLP DKSVIT TT LEA E+IL GG +
Sbjct: 74 DGHENLDRYI--TEPIRAAIFNLGYLPSADKSVITKPHTT---LEAIEKILDRLEVGGRL 128
Query: 216 SMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFK 266
++++Y GH GG E +AV + L D+ +Q LN+ P LV L K
Sbjct: 129 AIMIYYGHDGGDMEKDAVLEYVIGLDQRDFTAMLYQPLNQINTPPFLVMLEK 180
>gi|291543851|emb|CBL16960.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Ruminococcus
champanellensis 18P13]
Length = 190
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 21/187 (11%)
Query: 88 WKH-----VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142
W H V+ GD +DAT G G+DT ++ +V + G V DIQS+A+ ST++ L
Sbjct: 11 WAHKFIREHVKPGDLCIDATAGRGHDTALLCGLVGE---TGHVTAFDIQSDAIASTNARL 67
Query: 143 DKTTSKAEKGLVK---LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTK 199
AE G + HS M E T + + FN G+LPGGD ++ T ++T+
Sbjct: 68 ------AELGYTDRATVIQGSHSTMGEYAQPGT-ISCITFNFGWLPGGDHNIFTHADTSI 120
Query: 200 MALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR---P 256
A+ +L G++S+ +Y G G E +A+ A+ R++ + + NR P
Sbjct: 121 AAIGQGLELLREDGIMSLCIYYGRETGFAERDALLAYLRTIDSKQYTVMICEFANRSNCP 180
Query: 257 LAPVLVF 263
PVL++
Sbjct: 181 PIPVLIW 187
>gi|402838482|ref|ZP_10886989.1| MraW methylase-like family protein [Eubacteriaceae bacterium OBRC8]
gi|402272959|gb|EJU22170.1| MraW methylase-like family protein [Eubacteriaceae bacterium OBRC8]
Length = 188
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VDAT GNG DT M+++ + VY DIQ +A+ S + K + N
Sbjct: 25 VDATLGNGNDTNMIIETFGKDVK---VYSFDIQEKAIISAKENIKNEYHKN----IDFIN 77
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H M++ V S LV FNLGYLP D + T TT A+E A IL P GLIS++
Sbjct: 78 DSHEYMDKYVKGSP--DLVMFNLGYLPKSDHVIKTNPYTTLHAMEKAIEILKPNGLISIM 135
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLFK 266
Y+GH RE +E + R L ++ +N+ AP LV + K
Sbjct: 136 FYIGHDNAREYKTLLE-YVRILDARNFKAIHVNPINQDENAPKLVIIQK 183
>gi|71902971|ref|YP_279774.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS6180]
gi|71802066|gb|AAX71419.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS6180]
Length = 193
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 101 ATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL--VKLFN 158
AT GNG DT + ++ A VY D+Q +A++ TS L A+ GL +L
Sbjct: 35 ATMGNGNDTAFLAQL------AKKVYAFDVQEQAIRKTSERL------AQLGLSNAELIL 82
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H +++ V + VR FNLGYLP DKS+IT TT AL +L+ GG I+++
Sbjct: 83 AGHEAVDQYV--TEPVRAAIFNLGYLPSADKSIITLPNTTLQALSKLLTLLMVGGRIAIM 140
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
VY GH GG E +A+ F + L +Q LN+ P + + ++
Sbjct: 141 VYYGHDGGSLEKDALLDFVKQLDQRKVSAMLYQPLNQVNTPPFLIMLEK 189
>gi|19745534|ref|NP_606670.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS8232]
gi|21909811|ref|NP_664079.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS315]
gi|28896496|ref|NP_802846.1| SAM-dependent methyltransferase [Streptococcus pyogenes SSI-1]
gi|139474349|ref|YP_001129065.1| SAM-dependent methyltransferase [Streptococcus pyogenes str.
Manfredo]
gi|306827944|ref|ZP_07461211.1| rRNA methylase [Streptococcus pyogenes ATCC 10782]
gi|383479500|ref|YP_005388394.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS15252]
gi|383493423|ref|YP_005411099.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS1882]
gi|421893493|ref|ZP_16323995.1| SAM-dependent methyltransferase, MraW methylase family
[Streptococcus pyogenes NS88.2]
gi|19747654|gb|AAL97169.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|21903997|gb|AAM78882.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28811750|dbj|BAC64679.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|134272596|emb|CAM30863.1| putative rRNA methylase [Streptococcus pyogenes str. Manfredo]
gi|304429863|gb|EFM32905.1| rRNA methylase [Streptococcus pyogenes ATCC 10782]
gi|378927490|gb|AFC65696.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS15252]
gi|378929151|gb|AFC67568.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS1882]
gi|379980768|emb|CCG27717.1| SAM-dependent methyltransferase, MraW methylase family
[Streptococcus pyogenes NS88.2]
Length = 184
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 101 ATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL--VKLFN 158
AT GNG DT + ++ A VY D+Q +A++ TS L A+ GL +L
Sbjct: 26 ATMGNGNDTAFLAQL------AKKVYAFDVQEQAIRKTSERL------AQLGLSNAELIL 73
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H +++ V + VR FNLGYLP DKS+IT TT AL +L+ GG I+++
Sbjct: 74 AGHEAVDQYV--TEPVRAAIFNLGYLPSADKSIITLPNTTLQALSKLLTLLMVGGRIAIM 131
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
VY GH GG E +A+ F + L +Q LN+ P + + ++
Sbjct: 132 VYYGHDGGSLEKDALLDFVKQLDQRKVSAMLYQPLNQVNTPPFLIMLEK 180
>gi|450106801|ref|ZP_21860691.1| hypothetical protein SMU81_06298 [Streptococcus mutans SF14]
gi|450138152|ref|ZP_21872014.1| hypothetical protein SMU89_04070 [Streptococcus mutans NLML1]
gi|450176458|ref|ZP_21885805.1| hypothetical protein SMU98_05617 [Streptococcus mutans SM1]
gi|449222854|gb|EMC22567.1| hypothetical protein SMU81_06298 [Streptococcus mutans SF14]
gi|449234298|gb|EMC33315.1| hypothetical protein SMU89_04070 [Streptococcus mutans NLML1]
gi|449245122|gb|EMC43469.1| hypothetical protein SMU98_05617 [Streptococcus mutans SM1]
Length = 181
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 18/180 (10%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+ VDAT GNG DT + + A VY D+Q +AL+ T L++
Sbjct: 16 VLESNSIAVDATMGNGNDTAFLAGL------ASKVYAFDVQEQALQKTKERLEQLGFDNA 69
Query: 151 KGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
+ ++ H +++ V +R FNLGYLP DK++IT +TT LEA +IL
Sbjct: 70 QLILD----GHQTIDKYV--DGPIRAAIFNLGYLPSADKTIITKPDTT---LEAIGKILD 120
Query: 211 P---GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG IS+++Y GH GG+ E AV F + L + +Q LN+ P + + ++
Sbjct: 121 RLEVGGRISIMIYYGHEGGQMEKNAVLNFVKELDQQHFTVMLYQPLNQINTPPFLVMIEK 180
>gi|15674524|ref|NP_268698.1| SAM-dependent methyltransferase [Streptococcus pyogenes SF370]
gi|71910130|ref|YP_281680.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS5005]
gi|410680002|ref|YP_006932404.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
[Streptococcus pyogenes A20]
gi|13621627|gb|AAK33419.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71852912|gb|AAZ50935.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS5005]
gi|395453378|dbj|BAM29717.1| SAM-dependent methyltransferase [Streptococcus pyogenes M1 476]
gi|409692591|gb|AFV37451.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
[Streptococcus pyogenes A20]
Length = 184
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 101 ATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL--VKLFN 158
AT GNG DT + ++ A VY D+Q +A++ TS L A+ GL +L
Sbjct: 26 ATMGNGNDTAFLAQL------AKKVYAFDVQEQAIRKTSERL------AQLGLSNAELIL 73
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H +++ V + VR FNLGYLP DKS+IT TT AL +L+ GG I+++
Sbjct: 74 AGHEAVDQYV--TEPVRAAIFNLGYLPSADKSIITLPNTTLQALSKLLTLLMVGGRIAIM 131
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
VY GH GG E +A+ F + L +Q LN+ P + + ++
Sbjct: 132 VYYGHDGGSLEKDALLDFVKQLDQRKVSAMLYQPLNQVNTPPFLIMLEK 180
>gi|260588799|ref|ZP_05854712.1| putative rRNA methylase [Blautia hansenii DSM 20583]
gi|331084442|ref|ZP_08333545.1| hypothetical protein HMPREF0992_02469 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260540882|gb|EEX21451.1| putative rRNA methylase [Blautia hansenii DSM 20583]
gi|330401538|gb|EGG81122.1| hypothetical protein HMPREF0992_02469 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 188
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 13/186 (6%)
Query: 88 WKH-----VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142
W H V +DAT GNGYDTL + ++ + +G V D+Q +A+ T+ LL
Sbjct: 9 WSHELFQLQVNPNGLYIDATMGNGYDTLFLCELAGE---SGKVLAFDVQEKAIMCTTKLL 65
Query: 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL 202
+ + KL+ H M+E ++ +V + FN GYLPGGD ++ T ++T+ A+
Sbjct: 66 KEHNVENR---AKLYLDSHENMDEYA-EAGSVDGIYFNFGYLPGGDHNLATKADTSVKAI 121
Query: 203 EAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA-PVL 261
E +L GG++++ +Y G G EE + + + L+ ++ NR P+
Sbjct: 122 EKGLELLKKGGVMALCIYSGGDTGFEEKNRILEYLKKLNSRKYVVIVNSYYNRENNPPIP 181
Query: 262 VFLFKR 267
F+ K+
Sbjct: 182 AFIVKK 187
>gi|291546556|emb|CBL19664.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Ruminococcus sp. SR1/5]
Length = 188
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 11/181 (6%)
Query: 89 KHVVRK----GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144
+H +R+ GD +DAT GNG DT ++ ++ G V DIQ +AL+ T L +
Sbjct: 11 QHFIRQQVMPGDICIDATMGNGNDTALLSQLAG---KRGRVLAFDIQKQALEHTKERLKR 67
Query: 145 TTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEA 204
+L H M+ + + V + FNLGYLPGGD SV T ++++K A+E+
Sbjct: 68 DNCPEN---YQLLLESHENMD-VYAEEETVSCITFNLGYLPGGDHSVATRADSSKRAVES 123
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
++L GGL+++ +Y G G +E + + AF R L ++ + NRP P + L
Sbjct: 124 GLKLLKKGGLMTLCIYSGGDTGYQERDEMLAFIRQLDPHKYLVILSEYANRPNDPPIPVL 183
Query: 265 F 265
Sbjct: 184 I 184
>gi|363893244|ref|ZP_09320382.1| hypothetical protein HMPREF9630_00993 [Eubacteriaceae bacterium
CM2]
gi|361961500|gb|EHL14692.1| hypothetical protein HMPREF9630_00993 [Eubacteriaceae bacterium
CM2]
Length = 188
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VDAT GNG DT M+++ + VY DIQ +A+ S + K + N
Sbjct: 25 VDATLGNGNDTNMIIETFGKDVK---VYSFDIQEKAIISAKENIKNEYHKN----IDFIN 77
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H M++ V S LV FNLGYLP D + T TT A+E A IL P GLIS++
Sbjct: 78 DSHEYMDKYVKGSP--DLVMFNLGYLPKSDHVIKTNPYTTLHAMEKAIDILKPNGLISIM 135
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLFK 266
Y+GH RE +E + R L ++ +N+ AP LV + K
Sbjct: 136 FYIGHDNAREYKTLLE-YVRILDARNFKAIHVNPINQDENAPKLVIIQK 183
>gi|449995736|ref|ZP_21823159.1| hypothetical protein SMU54_03787 [Streptococcus mutans A9]
gi|449184232|gb|EMB86187.1| hypothetical protein SMU54_03787 [Streptococcus mutans A9]
Length = 181
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 18/181 (9%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA 149
V+ K +D T GNG DT+ + + A VY D+Q +AL T L+
Sbjct: 15 QVLDKNSIAIDTTMGNGNDTVFLSHL------AKKVYAFDVQEQALIKTREKLENLGFNN 68
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L H +++ V +R FNLGYLP DK++IT +TT LEA +IL
Sbjct: 69 ----VQLILDGHQTIDKYV--VGPIRAAIFNLGYLPSADKTIITKPDTT---LEAIGKIL 119
Query: 210 IP---GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
GG IS+++Y GH GG +E +AV F + L + +Q LN+ P + + +
Sbjct: 120 DRLEVGGRISIMIYYGHEGGDKEKDAVLNFVKELDQQHFTVMLYQPLNQINTPPFLVMIE 179
Query: 267 R 267
+
Sbjct: 180 K 180
>gi|375085378|ref|ZP_09732021.1| hypothetical protein HMPREF9454_00632 [Megamonas funiformis YIT
11815]
gi|374567396|gb|EHR38615.1| hypothetical protein HMPREF9454_00632 [Megamonas funiformis YIT
11815]
Length = 196
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 8/181 (4%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
K + + +VDAT GNG DTL + + + + +Y DIQ EA+++T +LL K
Sbjct: 16 KDRLNEAKIIVDATAGNGNDTLFLAQNALNNAQ---IYAFDIQKEAIENTKALLIKNKDN 72
Query: 149 AEKGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
L + + H ++ + T + + FNLGYLPGGD T +TT ++
Sbjct: 73 INLPLENISFIHDSHENIDNYI--QTKIDIAIFNLGYLPGGDHKFTTKDDTTLKTIDKIL 130
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLF 265
L G +++V+Y GH G +E ++++ F + L + ++M+N AP L ++
Sbjct: 131 NNLNINGYVAIVMYPGHEEGSKEYQSIKLFVKDLPKKSFTVGWYKMINHNFNAPALCWIE 190
Query: 266 K 266
K
Sbjct: 191 K 191
>gi|94993706|ref|YP_601804.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS10750]
gi|94547214|gb|ABF37260.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS10750]
Length = 193
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 102 TCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV--KLFNM 159
T GNG DT + ++ A VY D+Q +A++ TS L A+ GL+ +L
Sbjct: 36 TMGNGNDTAFLAQL------AKKVYAFDVQDQAIRKTSERL------AQLGLLNAELILA 83
Query: 160 CHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219
H +++ V + VR FNLGYLP DKS+IT TT AL +L+ GG I+++V
Sbjct: 84 GHEAVDQYV--TEPVRAAIFNLGYLPSADKSIITLPNTTLQALSKLLTLLMVGGRIAIMV 141
Query: 220 YVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
Y GH GG E +A+ F + L +Q LN+ P + + ++
Sbjct: 142 YYGHDGGSLEKDALLDFVKQLDQRKVSAMLYQPLNQVNTPPFLIMLEK 189
>gi|312864561|ref|ZP_07724792.1| putative rRNA methylase [Streptococcus downei F0415]
gi|311099688|gb|EFQ57901.1| putative rRNA methylase [Streptococcus downei F0415]
Length = 182
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 91/179 (50%), Gaps = 16/179 (8%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAL-KSTSSLLDKTTSKA 149
V+ K VDAT GNG DT + +V VY D+Q +AL K+ L + + A
Sbjct: 16 VLAKEAIAVDATMGNGNDTAFLAGLVKK------VYAFDVQKQALAKTQERLASQHLTNA 69
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL-EAAERI 208
E L H +++ V S +R FNLGYLP DKSVIT +TT +A+ + ER+
Sbjct: 70 E-----LILDGHENLDKYV--SEPIRAAIFNLGYLPSADKSVITKPDTTLVAIGKILERL 122
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+ GG +S+++Y GH GG E AV + L + +Q LN+ P + + ++
Sbjct: 123 EV-GGRLSLMIYYGHEGGDREKNAVLDYISQLDQTRFTAMIYQPLNQVNTPPFLVMVEK 180
>gi|300814939|ref|ZP_07095167.1| putative rRNA methylase [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300510909|gb|EFK38181.1| putative rRNA methylase [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 169
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 13/156 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KG + VDAT G G DT +LK+V ++ G V+ D+Q +++ ++
Sbjct: 20 KGKSAVDATMGMGNDTEKLLKVVGEK---GKVFAFDVQDQSINYCKEKFKNISN------ 70
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
+++ + H E + L +NLGYLPG DKSV T + +T ++L A +++ GG
Sbjct: 71 LEILKISH----EFIDILENFDLAIYNLGYLPGSDKSVTTMAMSTVISLMKATQLINKGG 126
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCK 249
+I +V Y+GH +EE +++E F +SL +I K
Sbjct: 127 IIIVVSYLGHENSQEERDSLEKFLKSLDQKKFIVEK 162
>gi|400289715|ref|ZP_10791742.1| rRNA methylase (SAM-dependent methyltransferase superfamily),
putative [Streptococcus ratti FA-1 = DSM 20564]
gi|399920506|gb|EJN93323.1| rRNA methylase (SAM-dependent methyltransferase superfamily),
putative [Streptococcus ratti FA-1 = DSM 20564]
Length = 182
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 92/182 (50%), Gaps = 22/182 (12%)
Query: 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+ K VDAT GNG DT + + A VY D+Q EAL T L++
Sbjct: 16 VLDKDSIAVDATMGNGNDTAFLAGL------AKTVYAFDVQEEALCKTQKRLEQL----- 64
Query: 151 KGL--VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
GL V+L H +++ V + + FNLGYLP DKS+IT +TT LEA ++I
Sbjct: 65 -GLDNVQLILDGHQNIDKYVNEPICAAI--FNLGYLPSADKSIITKPDTT---LEAIQKI 118
Query: 209 LI---PGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLF 265
L GG +++++Y GH GG E EAV + + L + +Q LN+ P + +
Sbjct: 119 LDRLESGGRMAIMIYHGHEGGNSEKEAVLNYVKQLPQKAFTAMCYQPLNQINTPPFLVMV 178
Query: 266 KR 267
++
Sbjct: 179 EK 180
>gi|223986106|ref|ZP_03636129.1| hypothetical protein HOLDEFILI_03437 [Holdemania filiformis DSM
12042]
gi|223961911|gb|EEF66400.1| hypothetical protein HOLDEFILI_03437 [Holdemania filiformis DSM
12042]
Length = 176
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VDATCG G DT+ + + A V LDIQ EA++ T T+ V +
Sbjct: 24 VDATCGGGNDTVFLAGL------ADNVLALDIQLEAVRKTQKKTAGFTN------VTVIQ 71
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H+ + + + +++ FNLGYLP +ITT ETT AL+AA L P GL+++
Sbjct: 72 ADHAELARWLTQP--AQIIVFNLGYLPYSSSPLITTPETTLPALDAAVSHLTPDGLLALA 129
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
Y GH GG EE +AV + L W + RP APVL L +
Sbjct: 130 CYRGHAGGMEEWQAVVGWIAQLG-SAWSVRSYTD-GRPAAPVLYHLRR 175
>gi|406669625|ref|ZP_11076893.1| hypothetical protein HMPREF9707_00796 [Facklamia ignava CCUG 37419]
gi|405582967|gb|EKB56941.1| hypothetical protein HMPREF9707_00796 [Facklamia ignava CCUG 37419]
Length = 189
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK--TTSKAEKGLVKL 156
+DAT GNG+D+ +L ++++ G + DIQ++A+ S+ +++ TTS + +
Sbjct: 25 IDATLGNGHDSYFIL---SNKNFKGRLLSFDIQTKAILSSYQRINQLQTTSAS----YQF 77
Query: 157 FNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216
+ H + + + ++ + FNLGYLPGG+ + T S++T AL+ L+ G +
Sbjct: 78 IHGSHDTLFDYLDTNSLIHGAIFNLGYLPGGNHQITTRSQSTLNALQQIMSKLVRKGRVI 137
Query: 217 MVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
+V+Y GHP G+ E E + + +++ ++ + LN+ P
Sbjct: 138 IVIYSGHPEGQVEKEQLLNYLKTIDQQEYHIYHYHALNQKNNP 180
>gi|257437488|ref|ZP_05613243.1| putative rRNA methylase [Faecalibacterium prausnitzii A2-165]
gi|257200056|gb|EEU98340.1| acetyltransferase, GNAT family [Faecalibacterium prausnitzii
A2-165]
Length = 285
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 14/172 (8%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV-KLF 157
+DATCGNG DT + ++V + G V G DIQ EA+ ST L A KGL +L
Sbjct: 125 IDATCGNGGDTAFLCRLVGE---GGRVLGFDIQPEAIASTRQNL------ARKGLAAELH 175
Query: 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217
H+ + + V T V V FN G+LPG D V + ++++ ALEAA L PGG++S
Sbjct: 176 CDSHANLLQYVQPGT-VDAVMFNFGWLPGADHGVFSHAQSSIPALEAALEALRPGGVLSA 234
Query: 218 VVYVGHPGGREELEAVEAFARSLSVDD--WICCKFQMLNRPLAPVLVFLFKR 267
++Y G G +E + + RS + + C F AP+ FL K+
Sbjct: 235 ILYSGKIIGSDEKTEILQWMRSRPLKQCTALVCSFANWAD-TAPLPCFLLKK 285
>gi|387760667|ref|YP_006067644.1| putative rRNA methylase [Streptococcus salivarius 57.I]
gi|339291434|gb|AEJ52781.1| putative rRNA methylase [Streptococcus salivarius 57.I]
Length = 182
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 86/174 (49%), Gaps = 19/174 (10%)
Query: 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL 156
VVDAT GNG DT + + A VY D+Q +AL+ T L S E +L
Sbjct: 22 VVVDATMGNGNDTAFLAGL------AKKVYAFDVQEQALEKTRQRL----SDLEIENAEL 71
Query: 157 FNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP---GG 213
H ++ V + +R FNLGYLP DKSVIT TT LEA E+IL GG
Sbjct: 72 ILDGHENLDRYV--TEPIRAAIFNLGYLPSADKSVITKPHTT---LEAIEKILDRLEVGG 126
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFK 266
+++++Y GH GG E +AV + L + +Q LN+ P LV L K
Sbjct: 127 RLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLVMLEK 180
>gi|340399520|ref|YP_004728545.1| SAM-dependent methyltransferase [Streptococcus salivarius CCHSS3]
gi|338743513|emb|CCB94023.1| SAM-dependent methyltransferase [Streptococcus salivarius CCHSS3]
Length = 182
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL-DKTTSKAEKGLVKLF 157
+DAT GNG DT + + A VY D+Q +AL+ TS L D AE L
Sbjct: 24 IDATMGNGNDTAFLAGL------AKKVYAFDVQEQALEKTSQRLSDLGIENAELILDGHE 77
Query: 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP---GGL 214
N+ H E I R FNLGYLP DKSVIT TT LEA E+IL GG
Sbjct: 78 NLDHYVTEPI-------RAAIFNLGYLPSADKSVITKPHTT---LEAIEKILDRLEVGGR 127
Query: 215 ISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+++++Y GH GG E +AV + L + +Q LN+ P + + ++
Sbjct: 128 LAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLVMLEK 180
>gi|307706880|ref|ZP_07643682.1| rRNA methylase family protein [Streptococcus mitis SK321]
gi|307617753|gb|EFN96918.1| rRNA methylase family protein [Streptococcus mitis SK321]
Length = 157
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 7/146 (4%)
Query: 122 AGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNL 181
A VY DIQ +AL+ T LD+ +L H +++ V ++ A FNL
Sbjct: 12 AKQVYAFDIQEQALEKTQERLDQAGMTN----AQLILQGHETLDQFVIEAKAG---IFNL 64
Query: 182 GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241
GYLP DKSVIT +TT ALE +L+ GG I++++Y GH GG E +AV F L
Sbjct: 65 GYLPSADKSVITQPQTTIEALEKLCHLLVKGGRIAIMIYYGHEGGDLERDAVLDFVSQLK 124
Query: 242 VDDWICCKFQMLNRPLAPVLVFLFKR 267
++ ++ LN+ P + + ++
Sbjct: 125 QQEYTAAIYRTLNQVNNPPFLVMIEK 150
>gi|383754014|ref|YP_005432917.1| hypothetical protein SELR_11860 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366066|dbj|BAL82894.1| hypothetical protein SELR_11860 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 186
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ + VVDAT GNG+DTL + + +D + +Y DIQ AL +T +T A
Sbjct: 19 LEQARVVVDATAGNGHDTLFLAEHTSDLAK---IYAFDIQEAALDNTRQ---RTAEYA-- 70
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
G ++ H+ + +V ++ + L FNLGYLPG + ++ T E+T +A++ L
Sbjct: 71 GRIEYVLRSHAEIGAVVAEN--IDLAIFNLGYLPGQEHALTTRKESTLLAVQQVLEKLSL 128
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR 255
G+ +V Y GH G +E E +E F + L ++ +++LN
Sbjct: 129 NGVCVIVAYPGHEAGAQEAEMLEEFLQHLPRKNYTAGCYRLLNH 172
>gi|307109690|gb|EFN57927.1| hypothetical protein CHLNCDRAFT_20577, partial [Chlorella
variabilis]
Length = 87
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 55/86 (63%)
Query: 182 GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241
GYLPG D++ T +T ++AA +L PGGL S++ Y GHPGG EE +AV+A +L
Sbjct: 1 GYLPGSDRATTTQESSTLAGVQAACDVLQPGGLCSILCYTGHPGGMEEYQAVKALVAALP 60
Query: 242 VDDWICCKFQMLNRPLAPVLVFLFKR 267
W + ++LNRP AP L+ L+KR
Sbjct: 61 PSRWNSSEVRLLNRPDAPALLLLWKR 86
>gi|419706753|ref|ZP_14234263.1| rRNA methylase (SAM-dependent methyltransferase superfamily),
putative [Streptococcus salivarius PS4]
gi|383283475|gb|EIC81429.1| rRNA methylase (SAM-dependent methyltransferase superfamily),
putative [Streptococcus salivarius PS4]
Length = 182
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 86/173 (49%), Gaps = 21/173 (12%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL-DKTTSKAEKGLVKLF 157
VDAT GNG DT + + A VY D+Q +AL+ TS L D AE L
Sbjct: 24 VDATMGNGNDTAFLAGL------AKKVYAFDVQEQALEKTSHRLSDLGIDNAE-----LI 72
Query: 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP---GGL 214
H ++ V + +R FNLGYLP DKSVIT TT LEA E+IL GG
Sbjct: 73 LDGHENLDRYV--TEPIRAAIFNLGYLPSADKSVITKPHTT---LEAIEKILDRLEVGGR 127
Query: 215 ISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFK 266
+++++Y GH GG E +AV + L + +Q LN+ P LV L K
Sbjct: 128 LAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLVMLEK 180
>gi|329768391|ref|ZP_08259885.1| hypothetical protein HMPREF0428_01582 [Gemella haemolysans M341]
gi|328837144|gb|EGF86785.1| hypothetical protein HMPREF0428_01582 [Gemella haemolysans M341]
Length = 189
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 11/180 (6%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
K V+ K VVDAT GNG DTL + K +SA VY DIQ A+++T++L+ K
Sbjct: 13 KEVIDKNSIVVDATAGNGNDTLFLAK-----TSAKKVYAFDIQQLAIENTTNLI-KEAEL 66
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A+K + L H ++ + + +R V FNLGYLP D + T +ETT ++
Sbjct: 67 ADKCEIIL--DSHFEFDKYI--NEKIRAVVFNLGYLPNADHEITTLAETTLATIKKFLLH 122
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLFKR 267
L GG I +VVY GH G+ E EA+ ++L + +Q +N + AP ++ + KR
Sbjct: 123 LEVGGRIIIVVYWGHENGKVEKEALLTELQNLDQKEAEVLIYQFINQKNNAPFIIAIEKR 182
>gi|160915816|ref|ZP_02078024.1| hypothetical protein EUBDOL_01832 [Eubacterium dolichum DSM 3991]
gi|158432292|gb|EDP10581.1| putative rRNA methylase [Eubacterium dolichum DSM 3991]
Length = 188
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 15/185 (8%)
Query: 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144
+ + ++ + VD T GNGYDTL + + V DIQ E+L T +LL +
Sbjct: 14 HDIMRNYTKSKGIAVDFTMGNGYDTLFLA-----QQDFAKVIAFDIQEESLMRTKALLQQ 68
Query: 145 TTSKAEKGLVKLFNMC--HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL 202
EK L K+ +C H ++ V +A + FN GYLP DK V T T+K+A+
Sbjct: 69 -----EKQLAKVNLICDGHENLDAYV---SAFDVGIFNFGYLPQTDKCVTTKLATSKIAV 120
Query: 203 EAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
E A L G++ +V+Y GH G++E + A++L + C ++N+ AP ++
Sbjct: 121 EKALACLAVHGVLLLVLYPGHEEGKKEADYFLEKAKALPSKQFAICHIALMNKKQAPSIL 180
Query: 263 FLFKR 267
+ ++
Sbjct: 181 VIERQ 185
>gi|212697469|ref|ZP_03305597.1| hypothetical protein ANHYDRO_02039 [Anaerococcus hydrogenalis DSM
7454]
gi|212675468|gb|EEB35075.1| hypothetical protein ANHYDRO_02039 [Anaerococcus hydrogenalis DSM
7454]
Length = 187
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 100 DATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM 159
D T GNGYD+ K + D+ + +Y DIQ A K+T L+ + K
Sbjct: 31 DMTAGNGYDS----KFILDKKNPQILYAFDIQDLARKNTLDLIGNNNN------FKFILD 80
Query: 160 CHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219
H +E + S + L +NLG+LP GDKS+ T ++ +L+++ ++L GLI M
Sbjct: 81 DHKNIENYI--SEKIDLFIYNLGFLPKGDKSITTNYKSVIGSLKSSLKLLNKNGLILMTF 138
Query: 220 YVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
Y GH G+ E + V F +SL + K+ N+ P
Sbjct: 139 YPGHDEGKSEAKYVGEFLKSLDQKLFQVIKYDFYNQINNP 178
>gi|241889241|ref|ZP_04776544.1| SAM-dependent methyltransferase [Gemella haemolysans ATCC 10379]
gi|241864078|gb|EER68457.1| SAM-dependent methyltransferase [Gemella haemolysans ATCC 10379]
Length = 189
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 95/182 (52%), Gaps = 15/182 (8%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT--T 146
K V+ K VVDAT GNG DTL + K +SA VY DIQ A+++T+ L+++ T
Sbjct: 13 KEVIDKNSVVVDATAGNGNDTLFLAK-----TSAKKVYAFDIQELAIENTTRLIEEAELT 67
Query: 147 SKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
K E L H ++ + + +R V FNLGYLP D + T +ETT ++
Sbjct: 68 DKCEIVL-----DSHFEFDKYIDDT--IRAVVFNLGYLPNADHDITTLAETTLATIKKFL 120
Query: 207 RILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFLF 265
L GG I +VVY GH G+ E EA+ ++L + +Q +N + AP ++ +
Sbjct: 121 LHLEIGGRIVIVVYWGHENGKVEKEALLNELQNLDQKEAEVLVYQFINQKNNAPFIIAIE 180
Query: 266 KR 267
KR
Sbjct: 181 KR 182
>gi|227485460|ref|ZP_03915776.1| rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172]
gi|227236590|gb|EEI86605.1| rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172]
Length = 180
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 12/168 (7%)
Query: 100 DATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM 159
D T G G D+ K + + + +YG DIQ EA K L+ ++ + L N
Sbjct: 24 DLTVGTGKDS----KYILENTEVARLYGFDIQKEAEKEAKKLI----GDDQRFIFHLDN- 74
Query: 160 CHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219
H+ +E+ + + L +NLGYLPGG+K + T E+T +LE +L G+ + +
Sbjct: 75 -HANIEKYI--KEGLDLAIYNLGYLPGGNKEITTKYESTIKSLEKILDLLNKNGIAIITI 131
Query: 220 YVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
Y GHP G+EE E +E + + + K RP P + + ++
Sbjct: 132 YPGHPAGKEESEKIEKYLAGIDQKKYGLIKIAYPTRPNNPPYIIVVEK 179
>gi|160947166|ref|ZP_02094333.1| hypothetical protein PEPMIC_01098 [Parvimonas micra ATCC 33270]
gi|158446300|gb|EDP23295.1| putative rRNA methylase [Parvimonas micra ATCC 33270]
Length = 183
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 12/178 (6%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA 149
+ V+ VD T GNG+D+ +L+++ E +Y DIQ EAL ++ LL + ++
Sbjct: 17 NYVKDVKIAVDMTVGNGFDSKNILEILKPEK----LYCFDIQQEALDNSKKLLKQYSN-- 70
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
+L H ++ V ++ + +NLGYLP GDK++ T +E + +L+ L
Sbjct: 71 ----FELILENHKNFDKFVKEN--IDFAMYNLGYLPKGDKNITTNAEDVEESLKKLLGKL 124
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GLI + Y+GH G+ E + F ++L+ ++ KF N+ P V + ++
Sbjct: 125 NSKGLIFITFYIGHSAGQIESLEISKFLQNLNQKEYTILKFTFENQKNNPPYVVMIQK 182
>gi|162447114|ref|YP_001620246.1| methyltransferase [Acholeplasma laidlawii PG-8A]
gi|161985221|gb|ABX80870.1| methyltransferase [Acholeplasma laidlawii PG-8A]
Length = 174
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 25/190 (13%)
Query: 77 GTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALK 136
+I +A N + KH+ + T+VDATCGNG+DTL + S V+ DIQ EAL
Sbjct: 4 ANVIDLAHNILLKHI-KPHMTIVDATCGNGHDTLFL------ASRVEHVHAFDIQQEALD 56
Query: 137 STSSL---LDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT 193
+T SL LD T H+ E I + V FNLGYLP GDKS+ T
Sbjct: 57 NTRSLTKDLDNIT------------YHHTSHEHITKLISNYDGVIFNLGYLPKGDKSITT 104
Query: 194 TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQML 253
+T L++ G + +V Y GH G E A+++F + + + +
Sbjct: 105 HHISTVNTLKSLHE--KNQGFVLIVAYPGHTEGIIEQVALQSFLDKQDI-KYEVIRLPHI 161
Query: 254 NRPLAPVLVF 263
+ AP++ F
Sbjct: 162 TKKDAPLIYF 171
>gi|342214168|ref|ZP_08706873.1| putative ribosomal RNA large subunit methyltransferase J
[Veillonella sp. oral taxon 780 str. F0422]
gi|341595236|gb|EGS37896.1| putative ribosomal RNA large subunit methyltransferase J
[Veillonella sp. oral taxon 780 str. F0422]
Length = 174
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 78/157 (49%), Gaps = 5/157 (3%)
Query: 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144
+ +W + T+VD TCGNGYDT+ +L S VY +DIQ AL T L K
Sbjct: 12 HHLWLDALVTARTIVDITCGNGYDTVYLLTHCHKNSH---VYAIDIQEVALTRTKEKLLK 68
Query: 145 TTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEA 204
+A K V H E +P ST + L+ NLGYLP D ++T S +T AL
Sbjct: 69 ELPQAIKQ-VDFILGSHDSALETLPVST-IDLMVANLGYLPNADHQIMTQSISTIKALSK 126
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241
L GL ++V Y G GR+E E +E + S+S
Sbjct: 127 GLEKLSIHGLCTIVAYPGTETGRKEAEDLEDYIASIS 163
>gi|290968314|ref|ZP_06559856.1| rRNA methylase family protein [Megasphaera genomosp. type_1 str.
28L]
gi|335049355|ref|ZP_08542354.1| putative rRNA methylase [Megasphaera sp. UPII 199-6]
gi|290781673|gb|EFD94259.1| rRNA methylase family protein [Megasphaera genomosp. type_1 str.
28L]
gi|333763492|gb|EGL40941.1| putative rRNA methylase [Megasphaera sp. UPII 199-6]
Length = 190
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 7/176 (3%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V VVD TCGNG+DTL + + +A ++ +Y DIQ A+++T L + E+
Sbjct: 20 VADASIVVDMTCGNGHDTLFLRERLAPRAT---LYAFDIQEPAVQATKKRLQQAGKWDEQ 76
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V L H ++ ++ + + FNLGYLP G+ ++ T T AL+ L
Sbjct: 77 --VILRQGSHEKLIHMI--DAEIDICVFNLGYLPAGNHNIHTEFAITLKALKICLHKLSK 132
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
G+I M Y G G EE V F + L + + +Q LN+ P ++++ +R
Sbjct: 133 KGMIIMAAYPGTRAGAEEAMGVAEFLQQLPQEQYHVSLWQPLNQIHEPPILYIVQR 188
>gi|365840975|ref|ZP_09382139.1| putative rRNA methylase [Anaeroglobus geminatus F0357]
gi|364559589|gb|EHM37561.1| putative rRNA methylase [Anaeroglobus geminatus F0357]
Length = 191
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
+ +VD TCGNG DT + + +++ +Y DIQ AL +T +LL AE+GL
Sbjct: 23 RARVLVDMTCGNGRDTAFLASHMGNDA---VLYAFDIQERALTATRALL------AEQGL 73
Query: 154 VKLFNMCHSRMEEIVPKSTAV--RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+ + EI+ K L+ FNLGYLPGG++++ T S TT A++ +
Sbjct: 74 CRKNIIIKRGSHEILLKEIEETPDLIVFNLGYLPGGNRAIHTDSATTLKAVDLGLHKISA 133
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
G+I + Y G P G E + + F +L + +Q +N+ P ++F+ ++
Sbjct: 134 NGIIMLTAYPGTPDGAREKDELARFLHTLPQQCFDVSCWQPVNQVHEPAVLFVIQK 189
>gi|295982627|pdb|3MTI|A Chain A, The Crystal Structure Of A Rrna Methylase From
Streptococcus Thermophilus To 1.95a
gi|295982628|pdb|3MTI|B Chain B, The Crystal Structure Of A Rrna Methylase From
Streptococcus Thermophilus To 1.95a
Length = 185
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 83/174 (47%), Gaps = 21/174 (12%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL-DKTTSKAEKGLVKL 156
VVDAT GNG DT + + + VY D+Q +AL TS L D E L
Sbjct: 26 VVDATXGNGNDTAFLAGL------SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGH 79
Query: 157 FNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP---GG 213
N+ H E I R FNLGYLP DKSVIT TT LEA E+IL GG
Sbjct: 80 ENLDHYVREPI-------RAAIFNLGYLPSADKSVITKPHTT---LEAIEKILDRLEVGG 129
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFK 266
+++ +Y GH GG E +AV + L + +Q LN+ P LV L K
Sbjct: 130 RLAIXIYYGHDGGDXEKDAVLEYVIGLDQRVFTAXLYQPLNQINTPPFLVXLEK 183
>gi|55821621|ref|YP_140063.1| rRNA methylase [Streptococcus thermophilus LMG 18311]
gi|116628334|ref|YP_820953.1| rRNA methylase (SAM-dependent methyltransferase superfamily),
[Streptococcus thermophilus LMD-9]
gi|386087247|ref|YP_006003121.1| RRNA methylase (SAM-dependent methyltransferase superfamily),
putative [Streptococcus thermophilus ND03]
gi|386345346|ref|YP_006041510.1| hypothetical protein STH8232_1896 [Streptococcus thermophilus JIM
8232]
gi|387910348|ref|YP_006340654.1| rRNA methylase [Streptococcus thermophilus MN-ZLW-002]
gi|55737606|gb|AAV61248.1| rRNA methylase (SAM-dependent methyltransferase superfamily),
putative [Streptococcus thermophilus LMG 18311]
gi|116101611|gb|ABJ66757.1| SAM-dependent methyltransferase [Streptococcus thermophilus LMD-9]
gi|312278960|gb|ADQ63617.1| RRNA methylase (SAM-dependent methyltransferase superfamily),
putative [Streptococcus thermophilus ND03]
gi|339278807|emb|CCC20555.1| hypothetical protein SMU.1697c [Streptococcus thermophilus JIM
8232]
gi|387575283|gb|AFJ83989.1| rRNA methylase [Streptococcus thermophilus MN-ZLW-002]
Length = 182
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 84/174 (48%), Gaps = 21/174 (12%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL-DKTTSKAEKGLVKL 156
VVDAT GNG DT + + + VY D+Q +AL TS L D E L
Sbjct: 23 VVDATMGNGNDTAFLAGL------SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGH 76
Query: 157 FNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP---GG 213
N+ H E I R FNLGYLP DKSVIT TT LEA E+IL GG
Sbjct: 77 ENLDHYVREPI-------RAAIFNLGYLPSADKSVITKPHTT---LEAIEKILDRLEVGG 126
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFK 266
+++++Y GH GG E +AV + L + +Q LN+ P LV L K
Sbjct: 127 RLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLVMLEK 180
>gi|325847059|ref|ZP_08169885.1| putative rRNA methylase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481031|gb|EGC84076.1| putative rRNA methylase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 187
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 100 DATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM 159
D T GNGYD+ K + D+ + +Y DIQ A K+T L+ ++ K
Sbjct: 31 DMTAGNGYDS----KFILDKKNPKILYAFDIQDLARKNTLDLIGNNSN------FKFILD 80
Query: 160 CHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219
H + + S + L +NLG+LP GDKS+ T ++ +L+++ ++L GLI M
Sbjct: 81 DHKNVANYI--SEKIDLFIYNLGFLPKGDKSITTNYKSVIGSLKSSLKLLNKNGLILMTF 138
Query: 220 YVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
Y GH G+ E + V F +SL + K+ N+ P
Sbjct: 139 YPGHDEGKNEAKYVGEFLKSLDQKLFQVIKYDFYNQINNP 178
>gi|255027475|ref|ZP_05299461.1| hypothetical protein LmonocytFSL_16008 [Listeria monocytogenes FSL
J2-003]
Length = 115
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 64/108 (59%), Gaps = 8/108 (7%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD VVDATCGNG+DTL++ ++V G V G DIQ A+ +T++ L
Sbjct: 10 AHDTLRKVVRSGDYVVDATCGNGHDTLLLAELVG---VNGHVLGFDIQQLAIDATNTRLK 66
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSV 191
++ V+L H+R+ E K VR FNLGYLPGGDK +
Sbjct: 67 NAGVSSQ---VELVCASHARIPEYTSKP--VRAAIFNLGYLPGGDKEL 109
>gi|294670666|ref|ZP_06735541.1| hypothetical protein NEIELOOT_02388 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307554|gb|EFE48797.1| hypothetical protein NEIELOOT_02388 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 151
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 83/144 (57%), Gaps = 12/144 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ G +D T GNG DTL + ++ +G V+ DIQ++AL +T+ LL + +
Sbjct: 18 LKNGGRALDGTAGNGRDTLFLAQLA---GGSGKVWAFDIQAQALSNTAGLLRENGVEER- 73
Query: 152 GLVKLFNMCHSRMEEIV--PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L H+ + + V P A+ FN GYLPGGDK+V T + ++ A++AA +L
Sbjct: 74 --VELIAASHADLADYVREPLDAAM----FNFGYLPGGDKTVTTKAGSSVRAMQAAAALL 127
Query: 210 IPGGLISMVVYVGHPGGREELEAV 233
GGL++ VVY GHP GR E A+
Sbjct: 128 AEGGLLTAVVYSGHPAGRAEAAAI 151
>gi|295101193|emb|CBK98738.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
in cell envelope biogenesis [Faecalibacterium
prausnitzii L2-6]
Length = 285
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 11/154 (7%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
+DATCGNG DT + ++ E G V G DIQ EA+ ST + L+K AE L
Sbjct: 125 IDATCGNGGDTAFLCRLAGPE---GRVLGFDIQPEAITSTRARLEKQGLTAE-----LIC 176
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H+ + + V TA +V FN G+LPG D SV +T++++ ALEAA L GG++S +
Sbjct: 177 DSHANLLQYVRSGTA-DIVMFNFGWLPGADHSVFSTADSSIPALEAALAALRAGGVLSAI 235
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDW--ICCKF 250
+Y G G +E +++ + R+L ++ + + C F
Sbjct: 236 LYSGRVIGTDEKQSILGWLRALPLEKYTVLVCDF 269
>gi|55823549|ref|YP_141990.1| rRNA methylase [Streptococcus thermophilus CNRZ1066]
gi|418027311|ref|ZP_12665975.1| Transferase transferring one-carbon groups [Streptococcus
thermophilus CNCM I-1630]
gi|55739534|gb|AAV63175.1| rRNA methylase (SAM-dependent methyltransferase superfamily),
putative [Streptococcus thermophilus CNRZ1066]
gi|354692109|gb|EHE91965.1| Transferase transferring one-carbon groups [Streptococcus
thermophilus CNCM I-1630]
Length = 182
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 84/174 (48%), Gaps = 20/174 (11%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL-DKTTSKAEKGLVKL 156
VVDAT GNG DT + + + VY D+Q +A+ TS L D E L
Sbjct: 23 VVDATMGNGNDTAFLAGL------SKKVYAFDVQEQAIGKTSQRLSDLGIENTELILDGH 76
Query: 157 FNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP---GG 213
N+ H E I R FNLGYLP DKSVIT TT LEA E+IL GG
Sbjct: 77 ENLDHYVREPI-------RAAIFNLGYLPSADKSVITKPHTT---LEAIEKILDRLEVGG 126
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+++++Y GH GG E +AV + L + +Q LN+ P + + ++
Sbjct: 127 RLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLVMLEK 180
>gi|375090455|ref|ZP_09736769.1| hypothetical protein HMPREF9708_01159 [Facklamia languida CCUG
37842]
gi|374565216|gb|EHR36487.1| hypothetical protein HMPREF9708_01159 [Facklamia languida CCUG
37842]
Length = 189
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
+DAT GNG+DT +L+ G V DIQ +A++S+ L + +L
Sbjct: 25 IDATLGNGHDTAFILR---HPFFKGKVIAFDIQHQAIQSSQEKLAGFPVEH----YQLLE 77
Query: 159 MCHSRMEEIVP--KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216
H + ++ V V FNLGYLPGG + T +T+ A+E L+ GG I
Sbjct: 78 ASHDQFDQFVSILDYPIVHGAVFNLGYLPGGGHQMTTRPSSTQAAIEQIANRLVKGGQII 137
Query: 217 MVVYVGHPGGREELEA-VEAFARSLSVDDWICCKFQMLNRPLAP 259
+V+Y GHP G EE + +E+F S S ++ + +N+ P
Sbjct: 138 VVIYAGHPQGLEEKQVLLESFT-SWSQQEFQISHLEYINQKNTP 180
>gi|348026258|ref|YP_004766063.1| methyltransferase family protein [Megasphaera elsdenii DSM 20460]
gi|341822312|emb|CCC73236.1| methyltransferase family protein [Megasphaera elsdenii DSM 20460]
Length = 199
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 7/175 (4%)
Query: 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG 152
R+ +VD TCGNG+DT + +++ D++ +Y DIQ A+ T L + +
Sbjct: 20 RQAHVLVDMTCGNGHDTAFLARLMPDDA---VLYAFDIQPCAIDHTQQRLQQEGLDGKH- 75
Query: 153 LVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212
+ C S E + V L+ FNLGYLP GD + T E T A++ +
Sbjct: 76 ---VVCTCGSHDELLARIQENVDLMVFNLGYLPSGDHKIHTNCEITLKAMKIGLNKIAIN 132
Query: 213 GLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
G+I + Y G G E +A+ ++ +++ D+ +Q +N P ++++ ++
Sbjct: 133 GIIMIAAYPGTEAGAREEQALRSYLQTIPQQDFHISSWQPVNEVHCPPVLYIVQK 187
>gi|445382129|ref|ZP_21427196.1| rRNA methylase [Streptococcus thermophilus MTCC 5460]
gi|445394882|ref|ZP_21428930.1| rRNA methylase [Streptococcus thermophilus MTCC 5461]
gi|444748755|gb|ELW73709.1| rRNA methylase [Streptococcus thermophilus MTCC 5461]
gi|444748833|gb|ELW73783.1| rRNA methylase [Streptococcus thermophilus MTCC 5460]
Length = 182
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL-DKTTSKAEKGLVKL 156
VVDAT GNG DT + + + VY D+Q +AL TS L D E L
Sbjct: 23 VVDATMGNGNDTAFLAGL------SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGH 76
Query: 157 FNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP---GG 213
N+ H E I R FNLGYLP DKSVIT TT LEA E+IL GG
Sbjct: 77 ENLDHYVREPI-------RAAIFNLGYLPSADKSVITKPHTT---LEAIEKILDRLEVGG 126
Query: 214 LISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+++++Y GH GG E + V + L + +Q LN+ P + + ++
Sbjct: 127 RLAIMIYYGHDGGDMEKDVVLEYVIGLDQSVFTAMLYQPLNQINTPPFLVMLEK 180
>gi|224010299|ref|XP_002294107.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970124|gb|EED88462.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 474
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 18/175 (10%)
Query: 81 TIAANGVWKH-VVRKGDTVVDATCGNGYDTLMMLKMVADESSAG-----------CVYGL 128
T A+ +W+ ++ DTV+DATCGNG D L + +M+ +S AG + G+
Sbjct: 130 TALAHSLWQSTILPYHDTVIDATCGNGKDCLALARMLFPKSVAGDDDVDENNPQPQLIGI 189
Query: 129 DIQSEALKSTS-SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGG 187
DIQS A+++T SLL + V + H + ++ + +V LV +NLGYLPG
Sbjct: 190 DIQSRAIRNTQKSLLASLPTDIYYNHVSVLEQSHEHLMDVPRHNKSVGLVCYNLGYLPGA 249
Query: 188 DKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSV 242
+ ET+ E A +L GG++S++ Y G EE AVE F L++
Sbjct: 250 G---TPSGETSFDYKEYASLLLRIGGMLSIMTYPG--SNLEESIAVEHFVEGLAM 299
>gi|347733066|ref|ZP_08866131.1| rRNA methylase family protein [Desulfovibrio sp. A2]
gi|347518093|gb|EGY25273.1| rRNA methylase family protein [Desulfovibrio sp. A2]
Length = 236
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 92/178 (51%), Gaps = 17/178 (9%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VD T GNG+DTL + ++V + G V+ D+Q EAL T++ L A V L
Sbjct: 62 VDGTAGNGHDTLFLARLVGE---GGLVHAFDVQPEALARTAARLAAEGVGAR---VTLHG 115
Query: 159 MCHSRME---------EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
H + + P AV + FNLG+LPGGD+ V T ++TT AL+A +L
Sbjct: 116 RGHEELAAALGAHGGVSVSPPRVAVGI--FNLGFLPGGDRGVATRTDTTLAALDALLPLL 173
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
PGGL+S+ VY GHPGG +E A++ L W +++ N+P P + L R
Sbjct: 174 APGGLVSLHVYAGHPGGADEAAALDGRLAELDWRMWRVARYEFANKPRNPERLLLVSR 231
>gi|417003528|ref|ZP_11942558.1| putative rRNA methylase [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478511|gb|EGC81624.1| putative rRNA methylase [Anaerococcus prevotii ACS-065-V-Col13]
Length = 181
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 13/173 (7%)
Query: 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVK 155
D VD T GNG D+L +L D+ A + DIQ EA ++T +LL + E L
Sbjct: 20 DLAVDMTAGNGNDSLFIL----DKIKAKRLVAFDIQKEAEEATKNLL----GERENFLFI 71
Query: 156 LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215
L H+ +++ + K + L +NLGYLP GDK++ T E+T +L +L +
Sbjct: 72 L--DSHANIDQYIKKK--IDLAVYNLGYLPKGDKAIATNYESTLESLRKLLHLLRKNSKV 127
Query: 216 SMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFKR 267
+ +Y GH GR E +E F SL + + K N+ +AP +V + K+
Sbjct: 128 YITIYPGHDQGRIEASKIEDFIASLPNNKYAIMKISYPNKGTIAPYIVIIEKK 180
>gi|293402194|ref|ZP_06646332.1| putative rRNA methylase [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304301|gb|EFE45552.1| putative rRNA methylase [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 187
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 11/184 (5%)
Query: 79 LITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST 138
++ +A + +HV + VD T G G D L + ++ S V+G DIQ EA+K +
Sbjct: 4 IVEMAHQLIEEHV-GEHSIAVDFTMGQGNDLLFLAQL----SDVKIVHGFDIQEEAVKMS 58
Query: 139 SSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETT 198
L KT EK KL + H + + + FN GYLP GD+++ T +T+
Sbjct: 59 EEKL-KTAGLLEKA--KLHLVGHEHCDAFLD---GYDIGIFNFGYLPHGDETITTMLDTS 112
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
K+A+ A ++L GL+ +VVY GH G++E ++ L + + +M+NR A
Sbjct: 113 KLAVAKALKLLHKYGLLVLVVYPGHEQGQKESAYFNSWCEELDGHCFSVLQMRMVNRKQA 172
Query: 259 PVLV 262
P ++
Sbjct: 173 PYIL 176
>gi|335047179|ref|ZP_08540200.1| putative rRNA methylase [Parvimonas sp. oral taxon 110 str. F0139]
gi|333760987|gb|EGL38542.1| putative rRNA methylase [Parvimonas sp. oral taxon 110 str. F0139]
Length = 184
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 12/179 (6%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
K+ + + VD T GNG+D+ +L+++ + +Y DIQ EAL ++ LL+K ++
Sbjct: 17 KNYISEIKVAVDMTVGNGFDSKNILEILQPKK----LYCFDIQKEALDNSKILLEKYSN- 71
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
+L H + V ++ + +NLGYLP GDK + T +E + +L+
Sbjct: 72 -----CELILENHKNFYKYVKEN--IDFAIYNLGYLPKGDKYITTNAEDVEESLKKLLDK 124
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L G+I + Y+GH G+ E + F ++L+ ++ KF N+ P V + ++
Sbjct: 125 LNSKGIIFITFYIGHSAGQIESLEISKFLQNLNQKEYTILKFTFENQKNNPPYVVMIQK 183
>gi|295099609|emb|CBK88698.1| Putative rRNA methylase. [Eubacterium cylindroides T2-87]
Length = 177
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 88/183 (48%), Gaps = 15/183 (8%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
I ++ K V+ KG +DAT G G DT LK ++ VYG +IQ + T
Sbjct: 4 IVDQSHDFLKDVLHKGAICIDATLGWGKDTDFFLK-----NNVRKVYGFEIQQAVFEQTV 58
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTK 199
S + + V +F+ H M+ V + V + FN GY PG D V T +T+
Sbjct: 59 SNI------KDSHFVPVFD-GHQNMDAYVKEE--VDAIIFNFGYCPGFDSQVKTNPKTSL 109
Query: 200 MALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
A+E A +L G +++V+Y H GREE +A+E + + L + K LN+ +P
Sbjct: 110 EAIEKALYLLKKKGRMALVIY-PHEEGREESKAIEMYLKKLDSHAFYIEKRTQLNQDHSP 168
Query: 260 VLV 262
L+
Sbjct: 169 YLI 171
>gi|303233764|ref|ZP_07320418.1| putative rRNA methylase [Finegoldia magna BVS033A4]
gi|302495198|gb|EFL54950.1| putative rRNA methylase [Finegoldia magna BVS033A4]
Length = 179
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 22/172 (12%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQS---EALKSTSSLLDKTTSKAEKGLVK 155
+D T GNG D+ ML + + + VYG DIQ + K T++L K
Sbjct: 25 LDMTFGNGNDSYKMLSI----NKSIQVYGFDIQKICIDNAKKTNNL-------------K 67
Query: 156 LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215
+ N H E+ + + FNLGYLPGGDK++ T +T LE +++ G I
Sbjct: 68 VINDSHLNFEKYT--NEKIDFAVFNLGYLPGGDKNITTDYDTVIKTLEKLLKVMNTEGQI 125
Query: 216 SMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+ Y GH G EE + F + L+ D+ ++ +N+ P V L +R
Sbjct: 126 VITFYPGHKPGLEESINIIKFLQKLNQKDFNVIRYDFINQINNPPFVCLIER 177
>gi|255505263|ref|ZP_05345115.3| putative rRNA methylase [Bryantella formatexigens DSM 14469]
gi|255269025|gb|EET62230.1| putative rRNA methylase [Marvinbryantia formatexigens DSM 14469]
Length = 221
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 7/180 (3%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
IT + + + +G +DAT GNG DT + G V DIQ AL+ T
Sbjct: 40 ITAWCQRMMREHIHEGSLCIDATMGNGNDTQFLCTQAGRN---GSVLAFDIQPAALEHTK 96
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTK 199
L L+ H R++ +A +AFNLGYLPGGD ++ T +T
Sbjct: 97 ERLAHALPYCNYQLIL---DSHERLDAYAAPESA-DCIAFNLGYLPGGDHTLATKPGSTL 152
Query: 200 MALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
ALE + +L GL+ + +Y G G E +AV ++ ++L ++ Q NRP P
Sbjct: 153 TALEKSLSLLKKDGLLCICIYSGGDTGFAERDAVLSWLQTLDSRKYLVLLTQYYNRPNNP 212
>gi|417926552|ref|ZP_12569950.1| putative rRNA methylase [Finegoldia magna SY403409CC001050417]
gi|341589067|gb|EGS32434.1| putative rRNA methylase [Finegoldia magna SY403409CC001050417]
Length = 179
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 16/169 (9%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
+D T GNG D+ ML + + + VYG DIQ + + D +K+ N
Sbjct: 25 LDMTFGNGNDSYKMLSI----NKSIQVYGFDIQKICIDNAKKTND----------LKVIN 70
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H E+ + + FNLGYLPGGDK++ T +T LE +++ G I +
Sbjct: 71 DSHLNFEKYT--NEKIDFAVFNLGYLPGGDKNITTNYDTVIKTLEKLLKLMNIEGQIVIT 128
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
Y GH G EE + F R+L+ ++ ++ LN+ P V L +R
Sbjct: 129 FYPGHRPGFEESINIINFLRTLNQKEFNVIRYDFLNQINNPPFVCLIER 177
>gi|302380705|ref|ZP_07269170.1| putative rRNA methylase [Finegoldia magna ACS-171-V-Col3]
gi|302311648|gb|EFK93664.1| putative rRNA methylase [Finegoldia magna ACS-171-V-Col3]
Length = 179
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 22/172 (12%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQS---EALKSTSSLLDKTTSKAEKGLVK 155
+D T GNG D+ ML + + + VYG DIQ + K T++L K
Sbjct: 25 LDMTFGNGNDSYKMLSI----NKSIQVYGFDIQKICIDNAKKTNNL-------------K 67
Query: 156 LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215
+ N H E+ + + FNLGYLPGGDK++ T +T LE +++ G I
Sbjct: 68 VINDSHLNFEKYT--NEKIDFAVFNLGYLPGGDKNITTNYDTVIKTLEKLLKLMNIEGQI 125
Query: 216 SMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+ Y GH G EE + F R+L+ ++ ++ LN+ P V L +R
Sbjct: 126 VITFYPGHRPGFEESINIINFLRTLNQKEFNVIRYDFLNQINNPPFVCLIER 177
>gi|406670504|ref|ZP_11077749.1| hypothetical protein HMPREF9706_00009 [Facklamia hominis CCUG
36813]
gi|405582020|gb|EKB56026.1| hypothetical protein HMPREF9706_00009 [Facklamia hominis CCUG
36813]
Length = 190
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 22/178 (12%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
+D T GNG+D+ +L + G V G DIQ EA+ + L+ S LF+
Sbjct: 25 IDGTLGNGHDSHYIL---SHHQFKGLVVGFDIQEEAIIQSKQRLESFASHQ----YLLFH 77
Query: 159 MCHSRMEEIVPKSTA--VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216
H +++ + K + FNLGYLPGG+ + T ++T A++ L+P G I
Sbjct: 78 ASHDLLDQKLDKDKFPFIHGAIFNLGYLPGGNHQITTHYDSTYRAIQQIATRLVPKGQII 137
Query: 217 MVVYVGHPGGREE----LEAVEAFAR---SLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+V+Y GH G +E L+ + +++ ++ D++ K N P P L+ + KR
Sbjct: 138 LVIYSGHRQGADEKHFLLDQLSTWSQGIFHIAYTDYLNQK----NNP--PCLIIIEKR 189
>gi|169824527|ref|YP_001692138.1| hypothetical protein FMG_0830 [Finegoldia magna ATCC 29328]
gi|167831332|dbj|BAG08248.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
Length = 179
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 16/169 (9%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
+D T GNG D+ ML + + + VYG DIQ + + KT + +K+ N
Sbjct: 25 LDMTFGNGNDSYKMLSI----NKSIQVYGFDIQKNCIDNAK----KTNN------LKVIN 70
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H E + + FNLGYLPGGDK++ T +T LE +++ G I +
Sbjct: 71 DSHLNFENYT--NEKIDFAVFNLGYLPGGDKNITTDYDTVIKTLEKLLKLMNIEGQIVIT 128
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
Y GH G EE + F R+L+ ++ ++ +N+ P V L +R
Sbjct: 129 FYPGHRPGFEESINIINFLRNLNQKEFNVIRYDFINQINNPPFVCLIER 177
>gi|421074457|ref|ZP_15535489.1| rRNA methylase [Pelosinus fermentans JBW45]
gi|392527498|gb|EIW50592.1| rRNA methylase [Pelosinus fermentans JBW45]
Length = 197
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 8/176 (4%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V + +VD T GNG D+L + + + V+ D+Q A+ T LL K + +
Sbjct: 18 VNRAKFLVDTTAGNGKDSLFLAQ---NSPIDAMVWSFDVQQAAIIKTKELLSKYSLDDK- 73
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
VKL H+ +++ + V + FNLGYLP + T ++T AL+ +L
Sbjct: 74 --VKLIIDSHANIDQYFNRRIDVAM--FNLGYLPNAQHKITTQCQSTIAALQKILGLLST 129
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG+IS++ Y GH G E +AV+ SL + + + M+N P ++++ ++
Sbjct: 130 GGVISIIAYSGHQEGYLENKAVQELLTSLPSNIFTVGCWSMINHSNNPPILYIVEK 185
>gi|18310063|ref|NP_561997.1| hypothetical protein CPE1081 [Clostridium perfringens str. 13]
gi|18144742|dbj|BAB80787.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 188
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 16/177 (9%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ + +DAT GNG+D + ++ VY DIQ EA+ S S K
Sbjct: 25 IENKNIAIDATLGNGHDCDFLSELFKK------VYAFDIQEEAVNSYKS--------KNK 70
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V++ H E + K V + +NLGYLPG +K V T + +T ++E +L
Sbjct: 71 ENVEVILDSHENFETYI-KEENVDCIVYNLGYLPGNNKEVTTVAHSTLKSIEIGLDLLGD 129
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLFKR 267
GL+ + +Y GH G++E +AV F L + + + NR AP LV + K+
Sbjct: 130 NGLMIIALYSGHEEGKKEKDAVLQFTSKLPKNKYGVLHTEFTNRAKSAPSLVVIEKK 186
>gi|224542049|ref|ZP_03682588.1| hypothetical protein CATMIT_01223 [Catenibacterium mitsuokai DSM
15897]
gi|224524982|gb|EEF94087.1| putative rRNA methylase [Catenibacterium mitsuokai DSM 15897]
Length = 171
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL-DKTTSKAEKGLVKLF 157
VD T GNG+DT +++ + VY DIQ EAL T L+ DK
Sbjct: 22 VDFTMGNGHDTKALIECCKE------VYSFDIQEEALIHTRELVGDKA------------ 63
Query: 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL-EAAERILIPGGLIS 216
++ H E + FNLGYLP GD ++ TT + T+ L +A E + +I
Sbjct: 64 HLIHDSHENFDHYVDTFDIGIFNLGYLPEGDHNITTTLDVTQRTLIKAVEHM---KKVIF 120
Query: 217 MVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLV 262
+ Y+GHP G+EE ++ + L + F+M+N+ AP ++
Sbjct: 121 ITCYIGHPQGKEEALWIDNYVSDLDTHTFNVSSFKMMNKKNAPYVI 166
>gi|110802121|ref|YP_698470.1| hypothetical protein CPR_1148 [Clostridium perfringens SM101]
gi|110682622|gb|ABG85992.1| conserved hypothetical protein [Clostridium perfringens SM101]
Length = 183
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 16/177 (9%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ + +DAT GNG+D + ++ VY DIQ EA+ S S K
Sbjct: 20 IENKNIAIDATLGNGHDCDFLSELFKK------VYAFDIQEEAVSSYKS--------KNK 65
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V++ H E + K V + +NLGYLPG +K V T + +T ++E +L
Sbjct: 66 ENVEVILDSHENFETYI-KEENVDCIVYNLGYLPGNNKEVTTVAHSTLKSIEIGLDLLGD 124
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLFKR 267
GL+ + +Y GH G++E +AV F L + + + NR AP LV + K+
Sbjct: 125 NGLMIIALYSGHEEGKKEKDAVLQFTSKLPKNKYGVLHTEFTNRAKSAPSLVVIEKK 181
>gi|168214958|ref|ZP_02640583.1| conserved hypothetical protein [Clostridium perfringens CPE str.
F4969]
gi|170713598|gb|EDT25780.1| conserved hypothetical protein [Clostridium perfringens CPE str.
F4969]
Length = 183
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 16/177 (9%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ + +DAT GNG+D + ++ VY DIQ EA+ S S K
Sbjct: 20 IENKNIAIDATLGNGHDCDFLSELFKK------VYAFDIQEEAVNSYKS--------KNK 65
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+++ H E + K V + +NLGYLPG +K V T + +T ++E +L
Sbjct: 66 ENIEVILDSHENFETYI-KEENVDCIVYNLGYLPGNNKEVTTVAHSTLKSIEIGLDLLGD 124
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLFKR 267
GL+ + +Y GH G++E +AV F L + + + NR AP LV + K+
Sbjct: 125 NGLMIIALYSGHEEGKKEKDAVLQFTSKLPKNKYGVLHTEFTNRAKSAPSLVVIEKK 181
>gi|422345785|ref|ZP_16426699.1| hypothetical protein HMPREF9476_00772 [Clostridium perfringens
WAL-14572]
gi|373227450|gb|EHP49764.1| hypothetical protein HMPREF9476_00772 [Clostridium perfringens
WAL-14572]
Length = 183
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 16/177 (9%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ + +DAT GNG+D + ++ VY DIQ EA+ S S K
Sbjct: 20 IKNKNIAIDATLGNGHDCDFLSELFKK------VYAFDIQEEAVNSYKS--------KNK 65
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V++ H E + K V + +NLGYLPG +K V T + +T ++E +L
Sbjct: 66 ENVEVILDSHENFETYI-KEENVDCIVYNLGYLPGNNKEVTTVAHSTLKSIEIGLDLLGD 124
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLFKR 267
GL+ + +Y GH G+ E +AV F L + + + NR AP LV + K+
Sbjct: 125 NGLMIIALYSGHEEGKIEKDAVLQFTSKLPKNKYGVLHTEFTNRAKSAPSLVVIEKK 181
>gi|374307371|ref|YP_005053802.1| SAM-dependent methyltransferase [Filifactor alocis ATCC 35896]
gi|291165845|gb|EFE27892.1| SAM-dependent methyltransferase [Filifactor alocis ATCC 35896]
Length = 197
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 10/164 (6%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VD T GNG D L + ++ A +DIQ +A+ + L K S+ E ++
Sbjct: 26 VDITLGNGLDVQKFLPYIQEKLIA-----IDIQQQAIDVSKERLQKVLSEEEYSKIEFVT 80
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H ++ V + V V NLGYLP D ++T S TT + L+ A ++L P GL+S++
Sbjct: 81 DNHVNIDRHVDR---VDFVFGNLGYLPNSDHKIMTKSNTTLICLDKALKLLNPNGLLSII 137
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVL 261
Y+G G+E ++ AF SL + LN+ +AP L
Sbjct: 138 SYLGQDRGQEH-RSLCAFFESLDSKQYKVIHINPLNQDEMAPTL 180
>gi|182626337|ref|ZP_02954092.1| conserved hypothetical protein [Clostridium perfringens D str.
JGS1721]
gi|177908356|gb|EDT70901.1| conserved hypothetical protein [Clostridium perfringens D str.
JGS1721]
Length = 183
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ + +DAT GNG+D + ++ VY DIQ EA+ S S K
Sbjct: 20 IENKNIAIDATLGNGHDCDFLSELFKK------VYAFDIQEEAVNSYKS--------KNK 65
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V++ H E + K V + +NLGYLPG +K V T + +T ++E +L
Sbjct: 66 ENVEVILDSHENFETYI-KEENVECIVYNLGYLPGNNKEVTTVAHSTLKSIEIGLDLLGD 124
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLFKR 267
GL+ + +Y GH G+ E +AV F L + + + NR AP LV + K+
Sbjct: 125 NGLMIIALYSGHEEGKIEKDAVLQFTSKLPKNKYGVLHTEFTNRAKSAPSLVVIEKK 181
>gi|306820623|ref|ZP_07454252.1| SAM-dependent methyltransferase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|402310896|ref|ZP_10829854.1| putative rRNA methylase [Eubacterium sp. AS15]
gi|304551354|gb|EFM39316.1| SAM-dependent methyltransferase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|400366584|gb|EJP19611.1| putative rRNA methylase [Eubacterium sp. AS15]
Length = 186
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 11/169 (6%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
+DAT GNG DT+ + + + +Y DIQ +A++ + + ++
Sbjct: 25 IDATLGNGKDTITIRETFGKKVK---IYAFDIQRDAIERSK----RNIPVEYHDNIEFIQ 77
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H +++ V + V+LV FNLGYLP D V T TT ALE A +L GGLIS++
Sbjct: 78 DSHEFIDKYVEEK--VQLVMFNLGYLPKSDHVVKTNPYTTLHALERALELLDVGGLISIM 135
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFK 266
YVGH RE +E + R L + +N+ AP + + K
Sbjct: 136 FYVGHDNAREYNSLLE-YIRILDAKKYKAIHINPINQYEFAPKMAIIQK 183
>gi|342732314|ref|YP_004771153.1| hypothetical protein SFBM_0634 [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384455717|ref|YP_005668312.1| hypothetical protein MOUSESFB_0594 [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417959366|ref|ZP_12602196.1| Putative rRNA methylase [Candidatus Arthromitus sp. SFB-1]
gi|417964318|ref|ZP_12606063.1| hypothetical protein SFB4_023G1 [Candidatus Arthromitus sp. SFB-4]
gi|417966315|ref|ZP_12607702.1| hypothetical protein SFB5_024G9 [Candidatus Arthromitus sp. SFB-5]
gi|417967936|ref|ZP_12608992.1| Putative rRNA methylase [Candidatus Arthromitus sp. SFB-co]
gi|418016283|ref|ZP_12655848.1| hypothetical protein SFBNYU_009470 [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372569|ref|ZP_12964661.1| Putative rRNA methylase [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|342329769|dbj|BAK56411.1| hypothetical protein SFBM_0634 [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506618|gb|EGX28912.1| hypothetical protein SFBNYU_009470 [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984060|dbj|BAK79736.1| hypothetical protein MOUSESFB_0594 [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380333592|gb|EIA24142.1| Putative rRNA methylase [Candidatus Arthromitus sp. SFB-1]
gi|380340518|gb|EIA29099.1| Putative rRNA methylase [Candidatus Arthromitus sp. SFB-co]
gi|380342238|gb|EIA30683.1| Putative rRNA methylase [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|380342697|gb|EIA31134.1| hypothetical protein SFB4_023G1 [Candidatus Arthromitus sp. SFB-4]
gi|380343074|gb|EIA31492.1| hypothetical protein SFB5_024G9 [Candidatus Arthromitus sp. SFB-5]
Length = 177
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 17/175 (9%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V++ + VD T G G DT+ + + VY D+Q E + D K +
Sbjct: 18 VKEKNISVDFTLGRGNDTIFL------SENFNYVYSFDLQKECI-------DDFELKNIQ 64
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
VKL H +++ + +NLGYLPG +K + T +E+T ++L A IL
Sbjct: 65 N-VKLILDSHENVDKYID---GFDCGMYNLGYLPGSNKEITTNAESTLISLYKAVNILNI 120
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFK 266
GG IS+V+Y+GH G+ E + V F L + +LN+ P LV + K
Sbjct: 121 GGFISIVLYIGHNQGKRESQEVLEFCSRLDNKRFNVAYLNLLNKNNPPSLVLINK 175
>gi|110800429|ref|YP_695783.1| hypothetical protein CPF_1337 [Clostridium perfringens ATCC 13124]
gi|168212064|ref|ZP_02637689.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC
3626]
gi|110675076|gb|ABG84063.1| conserved hypothetical protein [Clostridium perfringens ATCC 13124]
gi|170710019|gb|EDT22201.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC
3626]
Length = 183
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ + +DAT GNG+D + ++ VY DIQ EA+ S S K
Sbjct: 20 IENKNIAIDATLGNGHDCDFLSELFKK------VYAFDIQEEAVNSYKS--------KNK 65
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V++ H E + K V + +NLGYLPG +K V T + +T ++E +L
Sbjct: 66 ENVEVILDSHENFETYI-KEENVDCIVYNLGYLPGNNKEVTTVAHSTLKSIEIGLDLLGD 124
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLFKR 267
GL+ + +Y GH G+ E +AV F L + + + NR AP LV + K+
Sbjct: 125 NGLMIIALYSGHEEGKIEKDAVLQFTSKLPKNKYGVLHTEFTNRAKSAPSLVVIEKK 181
>gi|168207497|ref|ZP_02633502.1| conserved hypothetical protein [Clostridium perfringens E str.
JGS1987]
gi|170661178|gb|EDT13861.1| conserved hypothetical protein [Clostridium perfringens E str.
JGS1987]
Length = 183
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ + +DAT GNG+D + ++ VY DIQ EA+ S S K
Sbjct: 20 IENKNIAIDATLGNGHDCDFLSELFKK------VYAFDIQEEAVNSYKS--------KNK 65
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V++ H E + K V + +NLGYLPG +K V T + +T ++E +L
Sbjct: 66 ENVEVILDSHENFETYI-KEENVDCIVYNLGYLPGNNKEVTTVAHSTLKSIEIGLDLLGD 124
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFLFKR 267
GL+ + +Y GH G+ E +AV F L + + + NR AP LV + K+
Sbjct: 125 NGLMIIALYSGHEEGKIEKDAVLQFTSKLPKNKYGVLHTEFTNRANSAPSLVVIEKK 181
>gi|168218096|ref|ZP_02643721.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239]
gi|182379886|gb|EDT77365.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239]
Length = 183
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ + +DAT GNG+D + ++ VY DIQ EA+ S S K
Sbjct: 20 IENKNIAIDATLGNGHDCDFLSELFKK------VYAFDIQEEAVNSYKS--------KNK 65
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V++ H E + K V + +NLGYLPG +K V T + +T ++E +L
Sbjct: 66 ENVEVILDSHENFETYI-KEENVDCIVYNLGYLPGNNKEVTTVAHSTLKSIEIGLDLLGD 124
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLFKR 267
GL+ + +Y GH G++E + V F L + + + NR AP LV + K+
Sbjct: 125 NGLMIIALYSGHEEGKKEKDIVLQFTSKLPKNKYGVLHTEFTNRAKSAPSLVVIEKK 181
>gi|81429048|ref|YP_396048.1| methyltransferase [Lactobacillus sakei subsp. sakei 23K]
gi|78610690|emb|CAI55741.1| Putative methyltransferase [Lactobacillus sakei subsp. sakei 23K]
Length = 186
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 6/183 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + +R GD V+DAT G+G DTL + + VAD G VYG DIQ EAL + L
Sbjct: 10 AHFLLDQAIRPGDVVIDATVGHGDDTLFLAEKVAD---YGHVYGFDIQKEALATCQKRL- 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
TT+ + V L N H R+ +P V+ F+LG L +T TT A
Sbjct: 66 -TTANLSQQ-VSLINQGHERIITALPADLKVQAAIFSLGSLSSETSQDVTLPNTTISAYH 123
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVF 263
L GGL+ ++ EE+ + A L+ + + FQ +N+ + +L
Sbjct: 124 QVLSRLNRGGLLLFIIDNHFFKSEEEIHYLVADLTRLNPERYAVRHFQGVNQDVGQLLTV 183
Query: 264 LFK 266
+ K
Sbjct: 184 IKK 186
>gi|297588509|ref|ZP_06947152.1| MraW methylase family SAM-dependent methyltransferase [Finegoldia
magna ATCC 53516]
gi|297573882|gb|EFH92603.1| MraW methylase family SAM-dependent methyltransferase [Finegoldia
magna ATCC 53516]
Length = 179
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 16/169 (9%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
+D T GNG D+ ML + + VYG D+Q + + + + +K+ N
Sbjct: 25 LDMTFGNGNDSYKMLSI----NENIEVYGFDVQKSCIDNARKIDN----------LKVIN 70
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H E+ + + FNLGYLPGGDK++ T +T AL+ ++L G I +
Sbjct: 71 DSHLNFEKYT--NEKIDFAVFNLGYLPGGDKNITTDYDTVIKALDKLLKVLNIEGQIVIT 128
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
Y GH G EE + F + L+ ++ ++ +N+ P V L +R
Sbjct: 129 FYPGHKPGFEESINIIEFLKKLNQKEFNVIRYDFINQINNPPFVCLIER 177
>gi|404371217|ref|ZP_10976525.1| hypothetical protein CSBG_01484 [Clostridium sp. 7_2_43FAA]
gi|226912657|gb|EEH97858.1| hypothetical protein CSBG_01484 [Clostridium sp. 7_2_43FAA]
Length = 180
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 96/189 (50%), Gaps = 17/189 (8%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
I+ ++ + K V +DAT GNG+DT + + VY DIQ++A
Sbjct: 8 ISDLSHYIVKDFVLNKKIAIDATLGNGHDTDFLSSIFEK------VYSFDIQNQAC---- 57
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTK 199
D K K V++ N H +++ + ++ V + +NLG+LPGGDK + T T+
Sbjct: 58 ---DNYKLKEIKN-VEIINDSHHLLKKYIDEN--VDCIMYNLGFLPGGDKEITTLHNTSL 111
Query: 200 MALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LA 258
+++ +IL GGL+++ +Y GH G+ E + + ++L + + LNR ++
Sbjct: 112 ESIKEGLKILNSGGLMTICIYRGHYEGKIEESCILEYLKNLPKNKFGVMVQSYLNREDIS 171
Query: 259 PVLVFLFKR 267
P+LV + K+
Sbjct: 172 PLLVVIEKK 180
>gi|343520379|ref|ZP_08757348.1| MraW methylase-like family protein [Parvimonas sp. oral taxon 393
str. F0440]
gi|343397337|gb|EGV09871.1| MraW methylase-like family protein [Parvimonas sp. oral taxon 393
str. F0440]
Length = 178
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 12/173 (6%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
++ V+ VD T GNG+D+ +L+++ E +Y DIQ EAL ++ LL++ ++
Sbjct: 16 RNYVKDVKIAVDMTVGNGFDSKNILEILKPEK----LYCFDIQQEALDNSKKLLEQYSN- 70
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
+L H ++ V ++ + +NLGYLP GDK + T + + +L+
Sbjct: 71 -----YELILENHKNFDKFVKEN--IDFAIYNLGYLPKGDKFITTNAIDVEESLKKLLEK 123
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
L G I + Y+GH G+ E + + SL+ ++ KF N+ + ++
Sbjct: 124 LNSKGTIFITFYIGHLSGQMESLELSKYLESLNQKEYTILKFTFENQKIIHLM 176
>gi|225017534|ref|ZP_03706726.1| hypothetical protein CLOSTMETH_01461 [Clostridium methylpentosum
DSM 5476]
gi|224949684|gb|EEG30893.1| hypothetical protein CLOSTMETH_01461 [Clostridium methylpentosum
DSM 5476]
Length = 184
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 12/159 (7%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-TSKAEKGLVKL 156
V D T GNG DTL + A G VY DIQ +A+ +T S L+ AE L
Sbjct: 22 VGDFTMGNGSDTLFL----AQHCCKGKVYAFDIQQQAVDNTRSRLEANWVDNAE-----L 72
Query: 157 FNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216
HS +++ + + + FNLGYLPG D++V T ETT A+ A +L GG++
Sbjct: 73 ILDSHSNLDQYIREELDGGM--FNLGYLPGSDRTVTTKLETTLEAVRKAASLLKIGGVLV 130
Query: 217 MVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR 255
+VVY GH G E +E L + ++++N+
Sbjct: 131 IVVYPGHDEGALEGRTLEDELAQLDSKAYDVLLYRLINK 169
>gi|319936445|ref|ZP_08010861.1| rRNA methylase [Coprobacillus sp. 29_1]
gi|319808560|gb|EFW05112.1| rRNA methylase [Coprobacillus sp. 29_1]
Length = 175
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 17/169 (10%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VD T GNG+DTL +L+ VY DIQ +A++ T L+ V+L
Sbjct: 22 VDMTMGNGHDTLFLLQ------HCQKVYAFDIQRQAIEKTQKLIGYNRD------VQLIL 69
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H ++ + + + FNLGYLP D V T +TTK+A+E A R++ I V
Sbjct: 70 DGHQNIDCYLE---SFDIGIFNLGYLPLTDHHVTTLLKTTKIAIEKAIRMMNVALFI--V 124
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
VY GH G EE ++ + + L + + MLN+ +P ++ + K+
Sbjct: 125 VYPGHQEGYEESLWIDDYVKQLDTHQYNVSCYCMLNKKNSPYVIEIEKK 173
>gi|169342633|ref|ZP_02863677.1| conserved hypothetical protein [Clostridium perfringens C str.
JGS1495]
gi|169299275|gb|EDS81344.1| conserved hypothetical protein [Clostridium perfringens C str.
JGS1495]
Length = 183
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ + +DAT GNG+D + ++ VY DIQ EA+ S S K
Sbjct: 20 IEHKNIAIDATLGNGHDCDFLSELFKK------VYAFDIQEEAVNSYKS--------KNK 65
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V++ H + + K V + +NLGYLPG +K V T + +T ++E +L
Sbjct: 66 ENVEVILDSHENFKTYI-KEENVDCIVYNLGYLPGNNKEVTTVAHSTLKSIEIGLDLLGD 124
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLFKR 267
GL+ + +Y GH G+ E +AV F L + + + NR AP LV + K+
Sbjct: 125 NGLMIIALYSGHEEGKIEKDAVLQFTSKLPKNKYGVLHTEFTNRAKSAPSLVVIEKK 181
>gi|397606717|gb|EJK59410.1| hypothetical protein THAOC_20368 [Thalassiosira oceanica]
Length = 321
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 22/182 (12%)
Query: 81 TIAANGVWKH-VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGC-------VYGLDIQS 132
T A+ +W+ ++ DTV+DATCGNG D L + KM+ ++S + G+DIQ+
Sbjct: 77 TALAHTLWRSTILPYEDTVIDATCGNGKDCLALAKMLFPDASDDATIEGSPQLIGIDIQA 136
Query: 133 EALKST-SSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGD--- 188
A+++T SLL S + L H + ++ + +V LV +NLGYLPG
Sbjct: 137 RAVENTRRSLLASLPSNIYYNHLALLEQSHEHLLDVPKDTGSVGLVCYNLGYLPGAPSES 196
Query: 189 --------KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSL 240
K T + T ++ A +L GGL+S++ Y G EE AVE A L
Sbjct: 197 DPEIPADYKQTQTQTSCTLSSITDAALLLRVGGLLSVMTYPG--SNLEESVAVEHLAEGL 254
Query: 241 SV 242
++
Sbjct: 255 AM 256
>gi|392960814|ref|ZP_10326279.1| rRNA methylase [Pelosinus fermentans DSM 17108]
gi|421054428|ref|ZP_15517396.1| rRNA methylase [Pelosinus fermentans B4]
gi|421057129|ref|ZP_15520019.1| rRNA methylase [Pelosinus fermentans B3]
gi|421067753|ref|ZP_15529197.1| rRNA methylase [Pelosinus fermentans A12]
gi|421071290|ref|ZP_15532410.1| rRNA methylase [Pelosinus fermentans A11]
gi|392440786|gb|EIW18446.1| rRNA methylase [Pelosinus fermentans B4]
gi|392447206|gb|EIW24460.1| rRNA methylase [Pelosinus fermentans A11]
gi|392448108|gb|EIW25312.1| rRNA methylase [Pelosinus fermentans A12]
gi|392454711|gb|EIW31533.1| rRNA methylase [Pelosinus fermentans DSM 17108]
gi|392463684|gb|EIW39583.1| rRNA methylase [Pelosinus fermentans B3]
Length = 197
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 8/170 (4%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157
+VD T GNG D+L + + + V+ DIQ A+ T LL K + + VKL
Sbjct: 24 LVDTTAGNGKDSLFLAQ---NSPIDAMVWSFDIQQTAILKTKELLSKYSLDDK---VKLI 77
Query: 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217
H+ +++ + + + + FNLGYLP + T ++T AL+ +L G+IS+
Sbjct: 78 TDSHANIDQHI--NGKIDVAMFNLGYLPNAQHKITTQCQSTITALQKILGLLSIEGVISI 135
Query: 218 VVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
+ Y GH G E +AVE +L + + + M+N P ++++ ++
Sbjct: 136 IAYSGHQEGYLESKAVEELLTTLPSNIFTVGCWSMINHNNNPPILYIVEK 185
>gi|422873981|ref|ZP_16920466.1| hypothetical protein HA1_07092 [Clostridium perfringens F262]
gi|380304976|gb|EIA17259.1| hypothetical protein HA1_07092 [Clostridium perfringens F262]
Length = 183
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ + +DAT GNG+D + ++ VY DIQ EA+ S S K E
Sbjct: 20 IENKNIAIDATLGNGHDCDFLSELFKK------VYAFDIQEEAVNSYKS---KNKENVEA 70
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
L H + + K V + +NLGYLPG +K V T + +T ++E +L
Sbjct: 71 IL-----DSHENFKTYI-KEENVDCIVYNLGYLPGNNKEVTTVAHSTLKSIEIGLDLLGD 124
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL-APVLVFLFKR 267
GL+ + +Y GH G+ E +AV F L + + + NR AP LV + K+
Sbjct: 125 NGLMIIALYSGHEEGKIEKDAVLQFTSKLPKNKYGVLHTEFTNRAKSAPSLVVIEKK 181
>gi|450087373|ref|ZP_21854222.1| hypothetical protein SMU77_04250 [Streptococcus mutans NV1996]
gi|449218041|gb|EMC18064.1| hypothetical protein SMU77_04250 [Streptococcus mutans NV1996]
Length = 157
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 12/149 (8%)
Query: 122 AGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNL 181
A VY D+Q +AL T L V+L H +++ V +R FNL
Sbjct: 17 AKKVYAFDVQEQALIKTREKLGNLGFNN----VQLILDGHQTIDKYV--DGPIRAAIFNL 70
Query: 182 GYLPGGDKSVITTSETTKMALEAAERILIP---GGLISMVVYVGHPGGREELEAVEAFAR 238
GYLP DK++IT +TT LEA +IL GG IS+++Y GH GG +E +AV F +
Sbjct: 71 GYLPSADKTIITKPDTT---LEAIGKILDRLEVGGRISIMIYYGHEGGDKEKDAVLNFVK 127
Query: 239 SLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L + +Q LN+ P + + ++
Sbjct: 128 ELDQQHFTVMLYQPLNQINTPPFLVMIEK 156
>gi|354807078|ref|ZP_09040554.1| rRNA methylase family protein [Lactobacillus curvatus CRL 705]
gi|354514458|gb|EHE86429.1| rRNA methylase family protein [Lactobacillus curvatus CRL 705]
Length = 186
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 6/178 (3%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + +R GD V+DAT G+G DTL + + VAD G VYG +IQ EA+++ + D
Sbjct: 10 AHFLLDQAIRPGDVVIDATVGHGDDTLFLAERVAD---FGQVYGFEIQKEAIETCA---D 63
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ T + V L N H R+ +P V+ F+LG L +T TT A
Sbjct: 64 RLTKANQANQVTLLNQGHERIITALPPELKVQAAIFSLGALSPDSFEHVTLPNTTISAYH 123
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVL 261
L GGL+ VV +EE++ + A L ++ ++ +N VL
Sbjct: 124 QILSRLNRGGLLVFVVDPRFNETQEEIDYLIADLSRLEPTNYQVTHYKAINADQGQVL 181
>gi|418120742|ref|ZP_12757688.1| rRNA methylase [Streptococcus pneumoniae GA44194]
gi|353793569|gb|EHD73928.1| rRNA methylase [Streptococcus pneumoniae GA44194]
Length = 133
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGL 214
+L H +++ V K+ A FNLGYLP DKSVIT +TT ALE +L+ GG
Sbjct: 17 QLILQGHETLDQFVTKTKAG---IFNLGYLPSADKSVITRPQTTIEALEKLCHLLVKGGR 73
Query: 215 ISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
I++++Y GH GG E +AV F L+ ++ ++ LN+ P + + ++
Sbjct: 74 IAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPFLVMIEK 126
>gi|347542381|ref|YP_004857017.1| hypothetical protein RATSFB_0529 [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985416|dbj|BAK81091.1| hypothetical protein RATSFB_0529 [Candidatus Arthromitus sp.
SFB-rat-Yit]
Length = 177
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 81/187 (43%), Gaps = 17/187 (9%)
Query: 80 ITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS 139
IT A + V+ + VD T G G DTL + + VY D+Q E +
Sbjct: 6 ITDTAKKLLFENVKVKNISVDFTLGRGNDTLFL------SENFNYVYSFDLQKECINDFK 59
Query: 140 SLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTK 199
K E L H +++ + + +NLGYLP DK +IT E+T
Sbjct: 60 L---KNIKNVE-----LILDSHENVDKYLEEFDCG---MYNLGYLPASDKKIITNVESTL 108
Query: 200 MALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
++L + IL GG IS+V+YVGH GR E V F L + +LN+ P
Sbjct: 109 ISLRKSVDILNVGGFISVVLYVGHDQGRVESREVLKFCCDLDNKKFNVAYLNLLNKNNPP 168
Query: 260 VLVFLFK 266
LV + K
Sbjct: 169 SLVLINK 175
>gi|342218530|ref|ZP_08711141.1| putative rRNA methylase [Megasphaera sp. UPII 135-E]
gi|341589591|gb|EGS32863.1| putative rRNA methylase [Megasphaera sp. UPII 135-E]
Length = 193
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 7/176 (3%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++ VVD TCGNG DT+ + + + D + +Y DIQ A+ T L +
Sbjct: 19 LQQAHVVVDMTCGNGKDTVFLKRYMQDGAR---LYAFDIQPVAIARTKERLLQAKVWDPS 75
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
++ C S + ++ + + FNLGYLP G+ + TT TT A++ L
Sbjct: 76 ICLR----CGSHEQLVLAIEENIDICVFNLGYLPKGNHDIQTTCATTIKAIKFCLHKLSE 131
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
G+I + Y G P G+EE + +F + L + + LN+ P ++++ ++
Sbjct: 132 NGIIMVAAYPGTPIGKEEALGLASFLQKLPQSMFHVSLWNPLNQIHEPPILYIIQK 187
>gi|227500586|ref|ZP_03930635.1| rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
gi|227217291|gb|EEI82633.1| rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
Length = 181
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 13/170 (7%)
Query: 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158
VD T GNG+D+ +L ++ A + DIQ EA ++T +LL +
Sbjct: 23 VDMTAGNGHDSAFILDVLG----AKKLIAFDIQEEARENTLNLL------GPRDNFSFIL 72
Query: 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218
H+ ++ + + + L +NLGYLP DK++ T +++T +L+ +L G + +
Sbjct: 73 DSHAHIDNYIKEK--IDLAVYNLGYLPNSDKTITTRADSTIESLKKVLGLLQKNGRVIIT 130
Query: 219 VYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFKR 267
+Y GH G+ E + +E F L D+ K N+ ++P ++ + K+
Sbjct: 131 IYPGHDQGKIEADRLEIFLEKLDPKDFAILKLSYPNKTDISPYVILIEKK 180
>gi|310658196|ref|YP_003935917.1| putative RNA methylase (modular protein) [[Clostridium]
sticklandii]
gi|308824974|emb|CBH21012.1| putative RNA methylase (modular protein) [[Clostridium]
sticklandii]
Length = 331
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKS 137
T IT + + K ++ GD VVDAT GNG D + ++V ++ G VY DI S+A+++
Sbjct: 4 TQITELSKYILKEYIKSGDKVVDATLGNGNDAEFLAQIVGEQ---GRVYAFDIDSDAVEA 60
Query: 138 TSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET 197
L K L F + I K T + FNLGYLPGG+ T ++
Sbjct: 61 CKERL------QSKYLQIDFILDSHENLNIYVKDT-ISAAIFNLGYLPGGNHETYTKADV 113
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241
T AL A +L G++++ YVGH +E AV F ++L+
Sbjct: 114 TIKALNKALALLKLEGVLAIASYVGHDDF-QEFNAVREFMKNLN 156
>gi|417678613|ref|ZP_12328011.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
[Streptococcus pneumoniae GA17570]
gi|417695816|ref|ZP_12344996.1| rRNA methylase [Streptococcus pneumoniae GA47368]
gi|417698090|ref|ZP_12347263.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
[Streptococcus pneumoniae GA41317]
gi|418089053|ref|ZP_12726211.1| rRNA methylase [Streptococcus pneumoniae GA43265]
gi|418107031|ref|ZP_12744071.1| rRNA methylase [Streptococcus pneumoniae GA41410]
gi|418156948|ref|ZP_12793666.1| rRNA methylase [Streptococcus pneumoniae GA16833]
gi|418197559|ref|ZP_12834024.1| rRNA methylase [Streptococcus pneumoniae GA47778]
gi|418218393|ref|ZP_12845061.1| rRNA methylase [Streptococcus pneumoniae NP127]
gi|418236036|ref|ZP_12862605.1| rRNA methylase [Streptococcus pneumoniae GA19690]
gi|419433318|ref|ZP_13973437.1| rRNA methylase [Streptococcus pneumoniae GA40183]
gi|419444277|ref|ZP_13984292.1| rRNA methylase [Streptococcus pneumoniae GA19923]
gi|419522970|ref|ZP_14062552.1| rRNA methylase family protein [Streptococcus pneumoniae GA13723]
gi|419534093|ref|ZP_14073600.1| rRNA methylase family protein [Streptococcus pneumoniae GA17457]
gi|421217141|ref|ZP_15674042.1| rRNA methylase family protein [Streptococcus pneumoniae 2070335]
gi|421226832|ref|ZP_15683546.1| rRNA methylase family protein [Streptococcus pneumoniae 2072047]
gi|332074458|gb|EGI84934.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
[Streptococcus pneumoniae GA17570]
gi|332202531|gb|EGJ16600.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
[Streptococcus pneumoniae GA41317]
gi|332203813|gb|EGJ17880.1| rRNA methylase [Streptococcus pneumoniae GA47368]
gi|353762740|gb|EHD43298.1| rRNA methylase [Streptococcus pneumoniae GA43265]
gi|353780508|gb|EHD60965.1| rRNA methylase [Streptococcus pneumoniae GA41410]
gi|353824969|gb|EHE05136.1| rRNA methylase [Streptococcus pneumoniae GA16833]
gi|353864759|gb|EHE44670.1| rRNA methylase [Streptococcus pneumoniae GA47778]
gi|353876590|gb|EHE56439.1| rRNA methylase [Streptococcus pneumoniae NP127]
gi|353893965|gb|EHE73710.1| rRNA methylase [Streptococcus pneumoniae GA19690]
gi|379559448|gb|EHZ24477.1| rRNA methylase family protein [Streptococcus pneumoniae GA13723]
gi|379568127|gb|EHZ33109.1| rRNA methylase family protein [Streptococcus pneumoniae GA17457]
gi|379571970|gb|EHZ36927.1| rRNA methylase [Streptococcus pneumoniae GA19923]
gi|379577448|gb|EHZ42367.1| rRNA methylase [Streptococcus pneumoniae GA40183]
gi|395584627|gb|EJG45019.1| rRNA methylase family protein [Streptococcus pneumoniae 2070335]
gi|395597902|gb|EJG58108.1| rRNA methylase family protein [Streptococcus pneumoniae 2072047]
Length = 133
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 6/129 (4%)
Query: 142 LDKTTSKAEK-GLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETT 198
++KT + + GL +L H +++ V K+ A FNLGYLP DKSVIT +TT
Sbjct: 1 MEKTQERLHQAGLTNAQLILQGHETLDQFVTKAKAG---IFNLGYLPSADKSVITRPQTT 57
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
ALE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+
Sbjct: 58 IEALEKLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNN 117
Query: 259 PVLVFLFKR 267
P + + ++
Sbjct: 118 PPFLVMIEK 126
>gi|421242650|ref|ZP_15699172.1| rRNA methylase family protein [Streptococcus pneumoniae 2081074]
gi|395609970|gb|EJG70051.1| rRNA methylase family protein [Streptococcus pneumoniae 2081074]
Length = 133
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 6/129 (4%)
Query: 142 LDKTTSKAEK-GLV--KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETT 198
++KT + + GL +L H +++ V K+ A FNLGYLP DKSVIT +TT
Sbjct: 1 MEKTQERLHQAGLTNAQLILQGHETLDQFVTKAKAG---IFNLGYLPSADKSVITRLQTT 57
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
ALE +L+ GG I++++Y GH GG E +AV F L+ ++ ++ LN+
Sbjct: 58 IEALEKLCGLLVKGGRIAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNN 117
Query: 259 PVLVFLFKR 267
P + + ++
Sbjct: 118 PPFLVMIEK 126
>gi|346316995|ref|ZP_08858492.1| hypothetical protein HMPREF9022_04149 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|373125412|ref|ZP_09539246.1| hypothetical protein HMPREF0982_04175 [Erysipelotrichaceae
bacterium 21_3]
gi|422327727|ref|ZP_16408754.1| hypothetical protein HMPREF0981_02074 [Erysipelotrichaceae
bacterium 6_1_45]
gi|345902032|gb|EGX71824.1| hypothetical protein HMPREF9022_04149 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|371657613|gb|EHO22911.1| hypothetical protein HMPREF0982_04175 [Erysipelotrichaceae
bacterium 21_3]
gi|371662275|gb|EHO27481.1| hypothetical protein HMPREF0981_02074 [Erysipelotrichaceae
bacterium 6_1_45]
Length = 194
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 9/183 (4%)
Query: 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144
+ + K + + D T G GYDTL + A + + +Y DIQ +A T L+
Sbjct: 9 HDIMKSQLTENSICADFTMGQGYDTLFL----AQQKNCSHIYAFDIQPQAYVQTREKLES 64
Query: 145 TTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEA 204
+ + L+ + C + + L FN GYLP GD ++T +T+ A
Sbjct: 65 AQLEGKATLILDSHECCD-----IYIREPLDLGIFNFGYLPHGDPEIMTRRKTSLCAATK 119
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
A +L G++ +V+Y G REE EA+ A++ +L + C+ M N+ P ++ +
Sbjct: 120 ALHLLKKHGILILVLYWGQACNREESEALLAWSAALQSRCFSVCRITMHNKQNCPDILVI 179
Query: 265 FKR 267
K
Sbjct: 180 SKE 182
>gi|313897764|ref|ZP_07831305.1| putative rRNA methylase [Clostridium sp. HGF2]
gi|312957299|gb|EFR38926.1| putative rRNA methylase [Clostridium sp. HGF2]
Length = 204
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 9/183 (4%)
Query: 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144
+ + K + + D T G GYDTL + A + + +Y DIQ +A T L+
Sbjct: 19 HDIMKSQLTENSICADFTMGQGYDTLFL----AQQKNCSHIYAFDIQPQAYVQTREKLES 74
Query: 145 TTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEA 204
+ + L+ + C + + L FN GYLP GD ++T +T+ A
Sbjct: 75 AQLEGKATLILDSHECCD-----IYIREPLDLGIFNFGYLPHGDPEIMTRRKTSLCAATK 129
Query: 205 AERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
A +L G++ +V+Y G REE EA+ A++ +L + C+ M N+ P ++ +
Sbjct: 130 ALHLLKKHGILILVLYWGQACNREESEALLAWSAALQSRCFSVCRITMHNKQNCPDILVI 189
Query: 265 FKR 267
K
Sbjct: 190 SKE 192
>gi|418112008|ref|ZP_12749011.1| rRNA methylase [Streptococcus pneumoniae GA41538]
gi|418154695|ref|ZP_12791426.1| rRNA methylase [Streptococcus pneumoniae GA16242]
gi|353785657|gb|EHD66075.1| rRNA methylase [Streptococcus pneumoniae GA41538]
gi|353822987|gb|EHE03162.1| rRNA methylase [Streptococcus pneumoniae GA16242]
Length = 133
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGL 214
+L H +++ V K+ A FNLGYLP DKSVIT +TT ALE +L+ GG
Sbjct: 17 QLILQGHETLDQFVIKAKAG---IFNLGYLPSADKSVITRPQTTIEALEKLCGLLVKGGR 73
Query: 215 ISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
I++++Y GH GG E +AV F L+ ++ ++ LN+ P + + ++
Sbjct: 74 IAIMIYYGHEGGDLERDAVLDFVIQLNQQEYTAAIYRTLNQVNNPPFLVMIEK 126
>gi|220903359|ref|YP_002478671.1| putative rRNA methylase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219867658|gb|ACL47993.1| putative rRNA methylase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 225
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 92/179 (51%), Gaps = 18/179 (10%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157
+VDAT GNG+D+L +L + + +D+Q++A+ +T +LL A G
Sbjct: 48 LVDATAGNGHDSLFLLGAAPRNA---LLLAMDVQAQAVAATGALL------AAHGFAHAA 98
Query: 158 NMCHSRME-------EIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
+ H+ E + P+ L V FNLG+LPGG+K ++TT T+ ALEAA
Sbjct: 99 RVLHTGHECLADVLAALAPEDRQRPLACVVFNLGWLPGGNKDLVTTPATSLPALEAALEA 158
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L PGG IS+ Y GH GG EE A+EA+ RSL W NR A + L +R
Sbjct: 159 LAPGGCISLHCYTGHEGGAEEAAALEAWVRSLPPRRWRVLALADANRERAAESLLLVER 217
>gi|256544576|ref|ZP_05471948.1| rRNA methylase [Anaerococcus vaginalis ATCC 51170]
gi|256399465|gb|EEU13070.1| rRNA methylase [Anaerococcus vaginalis ATCC 51170]
Length = 187
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 12/160 (7%)
Query: 100 DATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM 159
D T GNG D+ K + D+ + +Y DIQ + + L+ ++ K
Sbjct: 31 DMTAGNGNDS----KFILDKKNPKILYAFDIQKLSQERCKKLI------GQRKNFKFILD 80
Query: 160 CHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219
H +E+ + + L +NLG+LP GDKS+ T ++ +L++ +L GLI +
Sbjct: 81 DHKNIEKYI--EEKIDLFIYNLGFLPKGDKSITTNYKSVIESLKSCLNLLNKNGLILITF 138
Query: 220 YVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
Y GH G+ E + V F ++L + K+ N+ P
Sbjct: 139 YPGHDEGKNEEKYVGEFLKNLDQKTFQVIKYNFYNQINTP 178
>gi|421539928|ref|ZP_15986081.1| putative rRNA methyltransferase [Neisseria meningitidis 93004]
gi|402320212|gb|EJU55703.1| putative rRNA methyltransferase [Neisseria meningitidis 93004]
Length = 138
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ + +G +D T GNG+DTL + + G V+ DIQ +AL +T L +
Sbjct: 15 RKALPEGGNALDGTAGNGHDTLFLAQTAGIR---GKVWAFDIQPQALNNTRCRL----QE 67
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
A V+L H +++ V S + FN G+LPGGDKS+ T +ET+ AL A +
Sbjct: 68 AGYSNVRLILDGHENLKQYV--SEPLNAAIFNFGWLPGGDKSLTTHTETSIPALCATLSL 125
Query: 209 LIPGGLISMVVY 220
L GG++ V+Y
Sbjct: 126 LKEGGMLIAVLY 137
>gi|257065730|ref|YP_003151986.1| putative rRNA methylase [Anaerococcus prevotii DSM 20548]
gi|256797610|gb|ACV28265.1| putative rRNA methylase [Anaerococcus prevotii DSM 20548]
Length = 181
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 21/183 (11%)
Query: 91 VVRKGDT--VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
++RK D VD T GNG D+ +L ++ A + DIQ A ++T LL
Sbjct: 13 LIRKKDIDLAVDMTAGNGNDSAFILDVLG----AKKLIAFDIQEAARENTLKLL------ 62
Query: 149 AEKGLVKLFNMC---HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA 205
G F H+ +++ V + + L +NLGYLP DK++ T +++T +LE
Sbjct: 63 ---GPRDNFTFVLDSHAHIDKYVKEK--IDLAVYNLGYLPNSDKTITTRADSTIESLEKV 117
Query: 206 ERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLN-RPLAPVLVFL 264
+L G + + +Y GH G+ E + ++ F L D+ K N + ++P +V +
Sbjct: 118 LSLLRKKGRVLITIYPGHAQGKIEADMLDHFLEELDPKDFAILKLSYPNKKDISPYVVTI 177
Query: 265 FKR 267
K+
Sbjct: 178 EKK 180
>gi|218283098|ref|ZP_03489188.1| hypothetical protein EUBIFOR_01774 [Eubacterium biforme DSM 3989]
gi|218216119|gb|EEC89657.1| hypothetical protein EUBIFOR_01774 [Eubacterium biforme DSM 3989]
Length = 175
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 15/156 (9%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ K V+ K VDAT G G DT L + VYG +IQ + +ST L
Sbjct: 8 SHEFLKPVLHKQAICVDATLGQGKDTDFFLS-----QNVHKVYGFEIQRDVFESTKERLG 62
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ F++ H MEE + + V + FN GY P GD + T S ++ A+
Sbjct: 63 NQRTC-------FFHVGHEHMEEYIHEE--VDAIIFNFGYFPQGDPKITTQSSSSVSAVR 113
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARS 239
A +L G +++V+Y H G+EE VE F ++
Sbjct: 114 QALNLLKVKGRMALVMY-PHDTGKEEAICVEEFLKT 148
>gi|373452454|ref|ZP_09544367.1| hypothetical protein HMPREF0984_01409 [Eubacterium sp. 3_1_31]
gi|371966323|gb|EHO83813.1| hypothetical protein HMPREF0984_01409 [Eubacterium sp. 3_1_31]
Length = 187
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 11/184 (5%)
Query: 79 LITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST 138
++ +A + +HV VD T G G D L + ++ S V+G DIQ EA+K +
Sbjct: 4 IVEMAHQLIEEHVGEHS-IAVDFTMGQGNDLLFLAQL----SDVKIVHGFDIQEEAVKMS 58
Query: 139 SSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETT 198
L KT EK KL + H + + + FN GYLP GD+++ T +T+
Sbjct: 59 EEKL-KTAGLLEKA--KLHLVGHEHCDAFLD---GYDIGIFNFGYLPHGDETITTMLDTS 112
Query: 199 KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLA 258
K+A+ A ++L GL+ +VVY GH G++E ++ L + + +M+N A
Sbjct: 113 KLAVAKALKLLHKHGLLVLVVYPGHEQGQKESAYFNSWCEELDGHCFNVLQMRMVNHKQA 172
Query: 259 PVLV 262
P ++
Sbjct: 173 PYIL 176
>gi|407961875|dbj|BAM55115.1| RNA methylase [Bacillus subtilis BEST7613]
Length = 107
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%)
Query: 179 FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFAR 238
FNLGYLPGGDKS+ T +T A+E I+ GLI +VVY GHP G+ E V F R
Sbjct: 13 FNLGYLPGGDKSITTNGSSTIKAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLEFCR 72
Query: 239 SLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
L + +N+ P + ++
Sbjct: 73 DLDQQTARVLTYGFINQQNDPPFIVAIEK 101
>gi|309777574|ref|ZP_07672526.1| putative rRNA methylase [Erysipelotrichaceae bacterium 3_1_53]
gi|308914663|gb|EFP60451.1| putative rRNA methylase [Erysipelotrichaceae bacterium 3_1_53]
Length = 188
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 12/190 (6%)
Query: 79 LITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST 138
++ I + + +HV+ +G D T G G DT+ + A + VY DIQ A T
Sbjct: 4 IVEIVHDIIRQHVI-EGSVCADFTMGQGNDTVFL----AQQKECRKVYAFDIQPSAYDMT 58
Query: 139 -SSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET 197
L + + L+ C S ++E + L FN GYLP GD ++ T +
Sbjct: 59 LQKLQAEHLEEKTSLLLASHEYCDSYIKE------PLDLGVFNFGYLPHGDPAITTRYAS 112
Query: 198 TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
+ A+ A +L G++ +V+Y G REE A+ + L + CK M N+
Sbjct: 113 SVNAITKALHLLRKHGILILVLYWGQAHNREESTALLTWCEKLESRCFSVCKITMHNKRD 172
Query: 258 APVLVFLFKR 267
P ++ + K
Sbjct: 173 CPCILVIEKE 182
>gi|194098054|ref|YP_002001102.1| hypothetical protein NGK_0477 [Neisseria gonorrhoeae NCCP11945]
gi|254493236|ref|ZP_05106407.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268594375|ref|ZP_06128542.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268596371|ref|ZP_06130538.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268598499|ref|ZP_06132666.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268600852|ref|ZP_06135019.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268603157|ref|ZP_06137324.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268681638|ref|ZP_06148500.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268683866|ref|ZP_06150728.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268686108|ref|ZP_06152970.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291044339|ref|ZP_06570048.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|385335248|ref|YP_005889195.1| hypothetical protein NGTW08_0360 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|193933344|gb|ACF29168.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|226512276|gb|EEH61621.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268547764|gb|EEZ43182.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268550159|gb|EEZ45178.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268582630|gb|EEZ47306.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268584983|gb|EEZ49659.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268587288|gb|EEZ51964.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268621922|gb|EEZ54322.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268624150|gb|EEZ56550.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268626392|gb|EEZ58792.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291011233|gb|EFE03229.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|317163791|gb|ADV07332.1| hypothetical protein NGTW08_0360 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 117
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ + +G +D T GNG+DTL + + + G V+ DIQ +AL +T L +
Sbjct: 13 REALPEGGNALDGTAGNGHDTLFLAQTAGNR---GKVWAFDIQPQALNNTRCRL----QE 65
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMAL 202
A V+L H +++ +P+ + FN G+LPGGDK++ T ET+ AL
Sbjct: 66 AGYSNVRLILDGHENLKQYIPEP--LDAAVFNFGWLPGGDKNLTTDKETSIPAL 117
>gi|219110515|ref|XP_002177009.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411544|gb|EEC51472.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 475
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 21/195 (10%)
Query: 66 PLPLCKDSPLS-----GTLITIAANGVWKHVVRKG-DTVVDATCGNGYDT----LMMLKM 115
PLP D+ L T A+ +W +V+R G D+ +DAT GNG D M+
Sbjct: 208 PLPRPTDTDLHYQQNPAISATALAHSLWGYVLRPGLDSAIDATAGNGGDAATIATMLFSN 267
Query: 116 VADES------SAGCVYGLDIQSEALKST-SSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168
V S S + +D+Q++A +T S+L D S + V++ H+ + +
Sbjct: 268 VTQSSTSLMPTSRSELVCVDVQTQACANTRSALEDCVGSDVVEQRVRIIQASHAPLP-LP 326
Query: 169 PKSTAVRLVAFNLGYLPGGD-KSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGR 227
++++ LV FNLG+LP + K+ T ++TT A+ A +L GGL+S++ Y
Sbjct: 327 TDTSSIALVVFNLGFLPQSENKARQTQTDTTLAAMADACTVLRIGGLLSVMTYPASNAHE 386
Query: 228 EELEAVEAFARSLSV 242
+ L AF SL++
Sbjct: 387 DAL--ARAFMESLAL 399
>gi|261368778|ref|ZP_05981661.1| putative rRNA methylase, partial [Subdoligranulum variabile DSM
15176]
gi|282569134|gb|EFB74669.1| putative rRNA methylase, partial [Subdoligranulum variabile DSM
15176]
Length = 108
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 161 HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220
H+R+ E+ +A V FN G+LPG D V +T+ + AL+AA ++L P G+++ V+Y
Sbjct: 2 HARLGELAAPGSA-DCVLFNFGWLPGADHEVHSTAAGSIPALQAALKLLKPRGILAAVLY 60
Query: 221 VGHPGGREELEAVEAFARSLSVDDW--ICCKFQMLNRPLAPVLVFLFKR 267
G G E +A AF RSL + + + C F AP+ F+ KR
Sbjct: 61 SGQVIGDSEKQAALAFFRSLPLTQYTVLVCDFANWAD-TAPLPCFILKR 108
>gi|413945422|gb|AFW78071.1| hypothetical protein ZEAMMB73_571929 [Zea mays]
Length = 154
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 103 CGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142
CGN DTL +LKMVAD++ GCVYG+DIQ A+++TSS L
Sbjct: 103 CGNDNDTLALLKMVADKTGRGCVYGMDIQESAIENTSSFL 142
>gi|242091053|ref|XP_002441359.1| hypothetical protein SORBIDRAFT_09g025185 [Sorghum bicolor]
gi|241946644|gb|EES19789.1| hypothetical protein SORBIDRAFT_09g025185 [Sorghum bicolor]
Length = 71
Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCV 125
T A+ W+++V+KGDTVVD TC NG TL +LKMVADE+ G V
Sbjct: 22 TEVAHAFWRNIVQKGDTVVDTTCENGRGTLTLLKMVADEAGHGHV 66
>gi|195611742|gb|ACG27701.1| hypothetical protein [Zea mays]
Length = 55
Score = 57.4 bits (137), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 103 CGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142
CGN DTL +LKMVAD++ GCVYG+DIQ A ++TSS L
Sbjct: 4 CGNDNDTLALLKMVADKTGRGCVYGMDIQESATENTSSFL 43
>gi|255030879|ref|ZP_05302830.1| hypothetical protein LmonL_20366 [Listeria monocytogenes LO28]
Length = 68
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
A+ + VVR GD VVDATCGNG+DTL++ ++V G V G DIQ A+ +T++ L+
Sbjct: 10 AHDTLRKVVRSGDYVVDATCGNGHDTLLLAELVGIN---GHVLGFDIQQLAIDATNTRLE 66
>gi|145354182|ref|XP_001421371.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581608|gb|ABO99664.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 247
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
Query: 180 NLGYLPG-----GDKSVITTSETTKMA--LEAAERILIPGGLISMVVYVGHPGGREELEA 232
NLGYLP +++ T +E + A + A R L GG+ ++V Y+GH GG EE EA
Sbjct: 15 NLGYLPAPGLRADERARRTRTEASTSARLVRAGTRTLRLGGVFTVVAYLGHDGGAEENEA 74
Query: 233 V-EAFARSLSVDDWICCKFQMLNRPLAPVLVFL 264
V AFA LS D+ ++NR APVL+ +
Sbjct: 75 VRRAFA-ELSPKDFTVVVHAVVNRKNAPVLLEI 106
>gi|407961059|dbj|BAM54299.1| RNA methylase [Synechocystis sp. PCC 6803]
Length = 103
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 69 LCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL 128
L K P S L+ +AA +GD VVDAT GNG+DT + ++V + G VY
Sbjct: 3 LKKILPYSKELLKMAAG--------EGDIVVDATMGNGHDTQFLAELVGEN---GHVYAF 51
Query: 129 DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAF 179
DIQ A+ +T L + LF+ H ++ E +P T ++ A
Sbjct: 52 DIQESAVANTKERL----GDMYQARTTLFHKSHDKIAESLPPETHGKVAAL 98
>gi|430832588|ref|ZP_19450629.1| hypothetical protein OGG_05196 [Enterococcus faecium E0333]
gi|430479711|gb|ELA56925.1| hypothetical protein OGG_05196 [Enterococcus faecium E0333]
Length = 90
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ + + +++ GD VVDAT GNG+DT+ + + + G VY DIQ +A+ +T L+
Sbjct: 9 SHTLLQEILQPGDHVVDATMGNGHDTVFLAEHIG---KTGHVYSFDIQQQAIDATRERLE 65
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKS 171
+ + V LF H + E++ +
Sbjct: 66 QRQLEER---VSLFLQGHETLGEVIAEQ 90
>gi|212704687|ref|ZP_03312815.1| hypothetical protein DESPIG_02750 [Desulfovibrio piger ATCC 29098]
gi|212671921|gb|EEB32404.1| putative rRNA methylase [Desulfovibrio piger ATCC 29098]
Length = 249
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 28/148 (18%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVY-GLDIQSEALKSTSSLLDKTTSKAEKGL--- 153
++D T GNG+D L + A ++ AG + LDIQ AL+++ + L++ A
Sbjct: 54 LLDGTAGNGHDCLFL----ARQAPAGSLLLALDIQEAALQASRARLEQAGMAARCCASAA 109
Query: 154 --------------VKLFNMCHSRMEEIV---PKSTAVR-LVA--FNLGYLPGGDKSVIT 193
++L H+ + E++ P+ R L+A FN GYLPG DK T
Sbjct: 110 AACSLPPLPSHTTDIRLVLHSHASLPELLDALPEEDRQRPLLAGIFNFGYLPGTDKRCTT 169
Query: 194 TSETTKMALEAAERILIPGGLISMVVYV 221
T+ + A++A L P G +S+ Y
Sbjct: 170 TAAGSLAAVDALLERLAPQGCLSLHCYT 197
>gi|376262626|ref|YP_005149346.1| methylase involved in ubiquinone/menaquinone biosynthesis
[Clostridium sp. BNL1100]
gi|373946620|gb|AEY67541.1| methylase involved in ubiquinone/menaquinone biosynthesis
[Clostridium sp. BNL1100]
Length = 271
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 27/157 (17%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++KG+TV+D G G D L+ + V + G YGLD+ T +L+ EK
Sbjct: 73 LQKGETVLDLGSGGGIDVLISARFVGE---TGKAYGLDM-------TDEMLELANRNKEK 122
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
K +E+I AV +V N VI +E+ + AL+ A R+L
Sbjct: 123 NGAKNVEFIKGYIEDIPLADEAVDVVTSN---------CVINLTESKEAALKEAYRVLKK 173
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248
GG +++ V EL+A+ R SV W+ C
Sbjct: 174 GGRLAIADIV-------ELKAMPDEVRQ-SVQMWVGC 202
>gi|2952524|gb|AAC05769.1| YtqB, partial [Streptococcus mutans]
Length = 83
Score = 45.8 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 187 GDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246
DKSVIT TT A++ L GG ++++VY GH GG +E AV F + L +
Sbjct: 2 ADKSVITQPATTLTAIKKILERLEIGGRLAIMVYYGHEGGDKEKYAVLNFVKELDQQHFT 61
Query: 247 CCKFQMLNRPLAPVLVFLFKR 267
+Q LN+ P + + ++
Sbjct: 62 VMLYQPLNQINTPPFLVMIEK 82
>gi|255028434|ref|ZP_05300385.1| hypothetical protein LmonL_03006 [Listeria monocytogenes LO28]
Length = 83
Score = 45.4 bits (106), Expect = 0.025, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 193 TTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQM 252
TT+++T ++ +L GG+I +V+Y GHP G++E +AV F ++ D+ +
Sbjct: 3 TTADSTLESIGHLMELLEVGGVIILVIYHGHPAGKQEKDAVMTFCEAIPQQDFHVLSYNF 62
Query: 253 LNRPL-APVLVFLFKR 267
+N+ AP ++ + KR
Sbjct: 63 INQKNDAPFVIIIEKR 78
>gi|440780286|ref|ZP_20958874.1| arsenite S-adenosylmethyltransferase [Clostridium pasteurianum DSM
525]
gi|440221962|gb|ELP61166.1| arsenite S-adenosylmethyltransferase [Clostridium pasteurianum DSM
525]
Length = 277
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG 152
+KG+ V+D G G D + K V + +G VYGLD+ E L+ L +K K E
Sbjct: 75 QKGEVVLDLGSGGGIDVFISSKYVGE---SGKVYGLDMTDEMLE----LANKNKDKME-- 125
Query: 153 LVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212
VK +E+I K+ +V ++ N VI E+ + AL+ A R+L G
Sbjct: 126 -VKNVEFIKGYIEDIPLKNESVDVITSN---------CVINLCESKEDALKEAYRVLKNG 175
Query: 213 GLISM 217
G +++
Sbjct: 176 GRLAI 180
>gi|283778430|ref|YP_003369185.1| type 11 methyltransferase [Pirellula staleyi DSM 6068]
gi|283436883|gb|ADB15325.1| Methyltransferase type 11 [Pirellula staleyi DSM 6068]
Length = 294
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
+++G T+ D CGNG+ TL + KMV E G +Y +DIQ E LK + D
Sbjct: 124 IKQGMTICDMGCGNGFYTLKLAKMVGPE---GHLYAVDIQPEMLKFLNERAD 172
>gi|333988570|ref|YP_004521177.1| type 11 methyltransferase [Methanobacterium sp. SWAN-1]
gi|333826714|gb|AEG19376.1| Methyltransferase type 11 [Methanobacterium sp. SWAN-1]
Length = 215
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 15/145 (10%)
Query: 82 IAANGVWKHVVRKGDTV-VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
I A+ V + KG+ V +DA CG+G+ ++ M+ DE++ +Y LDI +++
Sbjct: 24 IDAHDVISRLNLKGNEVFMDAGCGDGHAAMIAYDMLDDEAT---IYALDIYEPSIQDIKE 80
Query: 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL-VAFNLGY-LPGGDK---SVITTS 195
L EKG+ + + E I + V + + NL + DK +V TS
Sbjct: 81 DL------KEKGITNVIPLQSDITEHIALEDDTVDMCLMINLFHGFVANDKCKENVTDTS 134
Query: 196 ETTKMALEAAERILIPGGLISMVVY 220
A+ +RI+ PGG I+++ +
Sbjct: 135 SKVDEAITELKRIIKPGGKIAIMDF 159
>gi|255527150|ref|ZP_05394036.1| Methyltransferase type 11 [Clostridium carboxidivorans P7]
gi|296187808|ref|ZP_06856202.1| arsenite S-adenosylmethyltransferase [Clostridium carboxidivorans
P7]
gi|255509151|gb|EET85505.1| Methyltransferase type 11 [Clostridium carboxidivorans P7]
gi|296047765|gb|EFG87205.1| arsenite S-adenosylmethyltransferase [Clostridium carboxidivorans
P7]
Length = 272
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG 152
+KG+ V+D G G D + K V D +G VYGLD+ T +L+ EK
Sbjct: 74 QKGEVVLDLGSGGGIDVFISSKYVGD---SGKVYGLDM-------TDEMLELANKNKEKM 123
Query: 153 LVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212
VK +E+I + ++ ++ N VI E+ + AL+ A R+L G
Sbjct: 124 KVKNVEFLKGYIEDIPLGNESIDVITSN---------CVINLCESKEAALKEAYRVLKNG 174
Query: 213 GLISM---VVYVGHPGG-REELEA-VEAFARSLSVDDW--ICCKFQMLNRPLAPVLVF 263
G +++ VV P R +E V A +L V+++ I + N + PV V+
Sbjct: 175 GRLAIADVVVLKNVPDEIRHSVEMWVGCIAGALPVEEYKEILQRVGFKNIEITPVNVY 232
>gi|399888954|ref|ZP_10774831.1| arsenite S-adenosylmethyltransferase [Clostridium arbusti SL206]
Length = 272
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG 152
+KG+ V+D G G D + K V + +G VYGLD+ E L+ L +K K E
Sbjct: 75 QKGEVVLDLGSGGGIDVFISSKYVGE---SGKVYGLDMTDEMLE----LANKNKYKME-- 125
Query: 153 LVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212
VK +E+I K+ +V ++ N VI E+ + AL A R+L G
Sbjct: 126 -VKNVEFIKGYIEDIPLKNESVDVITSN---------CVINLCESKEDALREAYRVLKNG 175
Query: 213 GLISM 217
G +++
Sbjct: 176 GRLAI 180
>gi|229160870|ref|ZP_04288860.1| Methyltransferase [Bacillus cereus R309803]
gi|228622607|gb|EEK79443.1| Methyltransferase [Bacillus cereus R309803]
Length = 681
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG- 152
KGDT+VD G G +ML M+ +E+ +YG+DI + + K ++G
Sbjct: 422 KGDTIVDVGSGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK------KKQDEGR 471
Query: 153 ---LVK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAER 207
++K N+C S +E V ++ Y+ K E K L++A
Sbjct: 472 SWDVIKGDAINLCSSFDKESVDTIVYSSILHELFSYIEYEGKKF--NHEVIKKGLQSAYE 529
Query: 208 ILIPGGLI 215
+L PGG I
Sbjct: 530 VLKPGGRI 537
>gi|124485896|ref|YP_001030512.1| Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II-like protein
[Methanocorpusculum labreanum Z]
gi|124363437|gb|ABN07245.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
subunit [Methanocorpusculum labreanum Z]
Length = 176
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 72 DSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ 131
D P T + A + K +R GDTVVD CG G TL M K+ E G VY +D +
Sbjct: 2 DLPGGPTQPEVMAVSLAKLAIRPGDTVVDIGCGTGTVTLEMAKLAGKE---GYVYAVDRR 58
Query: 132 SEALKSTSS 140
+A++ T
Sbjct: 59 HQAIECTQE 67
>gi|402223201|gb|EJU03266.1| S-adenosyl-L-methionine-dependent methyltransferase [Dacryopinax
sp. DJM-731 SS1]
Length = 296
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 19/126 (15%)
Query: 98 VVDATCGNGYDTLMML-KMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL 156
V+D CG+G T ++L +M ++ V DIQSE +K + +++ K E VKL
Sbjct: 55 VLDNACGSGIVTAILLGRMSEEQKRRTKVLCGDIQSEVVKYVTERIER--EKWEGVEVKL 112
Query: 157 FNMCHSRMEEIVPKSTAVR-LVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215
+ +++ P ST L +F + LP K + +AL+ RIL PGGL
Sbjct: 113 LDAQDTKL----PSSTYTHVLTSFGIMLLP---KPI--------LALQEIHRILAPGGLN 157
Query: 216 SMVVYV 221
+ +V
Sbjct: 158 AFSTWV 163
>gi|402224080|gb|EJU04143.1| S-adenosyl-L-methionine-dependent methyltransferase [Dacryopinax
sp. DJM-731 SS1]
Length = 343
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 25/169 (14%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE-KG 152
+G TV+D CG G +L M A ++ A V G+D+ S+++D+ E G
Sbjct: 61 EGKTVLDVGCGTG-----ILSMFAAKAGAKHVVGIDM--------SNIIDQAQKIIEVNG 107
Query: 153 LVKLFNMCHSRMEEI-VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+ ++EE +P L++ +GY + L A +R L P
Sbjct: 108 FKDKITLVKGKLEETELPIQEFDILISEWMGYF-------LLYESMLNTVLLARDRYLKP 160
Query: 212 GGLI---SMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPL 257
GGLI S +Y+ +E E AF + D+ C K L PL
Sbjct: 161 GGLILPDSATLYIAAIEDQEYKEEKIAFWDDVYGFDYSCIKDIALREPL 209
>gi|88602782|ref|YP_502960.1| hypothetical protein Mhun_1507 [Methanospirillum hungatei JF-1]
gi|88188244|gb|ABD41241.1| conserved hypothetical protein [Methanospirillum hungatei JF-1]
Length = 184
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 64/157 (40%), Gaps = 35/157 (22%)
Query: 72 DSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ 131
D+PL LI N + + VR G TV+D CG G+ T +M +V E G V D+Q
Sbjct: 15 DNPLRSLLIR--PNRLLRSHVRPGMTVLDVGCGPGFFTGVMAGLVGPE---GTVIAADLQ 69
Query: 132 SEALKSTSS-----------LLDKTTSKA----EKGLVKL---FNMCHSRMEEIVPKSTA 173
E L T +L KT S+ E G V F+M H VP
Sbjct: 70 PEMLDLTKEKMIRKGLIDRVILHKTASETLHLNESGFVDFAIGFHMVHE-----VPSPRT 124
Query: 174 VRLVAFNLGYLPGG------DKSVITTSETTKMALEA 204
+ F+ PGG K + T E ++ +EA
Sbjct: 125 LFAEVFDC-LKPGGIFLVSEPKGHVKTEEFSQEMMEA 160
>gi|448353514|ref|ZP_21542290.1| type 11 methyltransferase [Natrialba hulunbeirensis JCM 10989]
gi|445640374|gb|ELY93463.1| type 11 methyltransferase [Natrialba hulunbeirensis JCM 10989]
Length = 258
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 86 GVWKHV----VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSL 141
GV H+ +R GD+V+D G+G D+ + V DE G V GLD+ E L++ +
Sbjct: 61 GVGYHMDMASLRPGDSVLDLGSGSGTDSFIAALHVGDE---GRVVGLDMTDEQLENARAA 117
Query: 142 LDKTTSKAEKGLVKL-FNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
D E G+ + F H +EE+ + +V N VI S +
Sbjct: 118 RD------EAGMDTVSFERGH--IEELPFGDDSFDVVLSN---------GVINLSAHKEQ 160
Query: 201 ALEAAERILIPGGLISM 217
E ER+L P G +++
Sbjct: 161 VFEEVERVLAPDGRLAL 177
>gi|268325995|emb|CBH39583.1| conserved hypothetical protein, SAM dependent methyltransferase
family [uncultured archaeon]
Length = 187
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 35/147 (23%)
Query: 63 NCTPLPLCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSA 122
+ PL D+P+ T+ A G+ + G V++ CG G+ T+ ++K+V D
Sbjct: 19 HGNPLRRIFDNPIK----TLKAAGI-----QPGQQVLEVGCGPGFFTIPVVKLVGDN--- 66
Query: 123 GCVYGLDIQSEALKSTSSLLDK--------TTSKAEK--------GLVKLFNMCHS-RME 165
GC++ +D+ A+K L K T + A K LV LF + H+ ++
Sbjct: 67 GCIHAIDLHPLAIKMVEKKLQKNSLTNAKVTIANAAKTGLPSNSIDLVLLFGIIHTLPLD 126
Query: 166 EIVPKSTAVRLVAFNL------GYLPG 186
++P+ V V+ L G+LPG
Sbjct: 127 HVLPELYRVLRVSGALAVQTFPGWLPG 153
>gi|347735222|ref|ZP_08868144.1| methyltransferase type 11 [Azospirillum amazonense Y2]
gi|346921630|gb|EGY02273.1| methyltransferase type 11 [Azospirillum amazonense Y2]
Length = 232
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 22/130 (16%)
Query: 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG 152
R GDTV++ CG G+ + +K V G V+G+D QS + ++ L++ + E+G
Sbjct: 58 RPGDTVLELGCGPGHALALAVKAV---GPTGTVHGID-QSAVMLRQAAKLNRQSR--EQG 111
Query: 153 LVKLFNMCHSRMEEI-VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+ L R + + +P A ++A N+ Y + L A R+L P
Sbjct: 112 RLHLHL---GRFDTLPLPAGAADGMLAVNVAYF----------WQNAADVLREARRVLRP 158
Query: 212 GGLISMVVYV 221
GG +VVYV
Sbjct: 159 GG--RLVVYV 166
>gi|159896643|ref|YP_001542890.1| type 11 methyltransferase [Herpetosiphon aurantiacus DSM 785]
gi|159889682|gb|ABX02762.1| Methyltransferase type 11 [Herpetosiphon aurantiacus DSM 785]
Length = 274
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 19/134 (14%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
N V + ++ G V+D G G D L+ K V +G VYG+D+ T ++LD
Sbjct: 63 GNPVVRAALQLGQVVLDLGSGGGLDVLLAAKQVG---PSGFVYGVDM-------TDAMLD 112
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
A K ++ +E++ ++ V ++ N VI + MAL
Sbjct: 113 LARQNAHKAQIENVAFLKGDIEQLPLENEQVDVIISN---------CVINLAPDKGMALR 163
Query: 204 AAERILIPGGLISM 217
A R+L GG +++
Sbjct: 164 EAYRVLKVGGYMAI 177
>gi|421074847|ref|ZP_15535868.1| S-adenosyl-methyltransferase MraW [Pelosinus fermentans JBW45]
gi|392527067|gb|EIW50172.1| S-adenosyl-methyltransferase MraW [Pelosinus fermentans JBW45]
Length = 354
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
G T +DAT G G TL MLK + S G +Y D+ L T L++ +E ++
Sbjct: 75 GQTGLDATLGYGGHTLEMLKCL---HSKGRLYATDVDPLELPRTKDRLERLGYGSE--IL 129
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLG 182
++ M S++++I+P+S V +LG
Sbjct: 130 EIKQMNFSKIDQIIPESGLFNFVLADLG 157
>gi|376262710|ref|YP_005149430.1| methylase involved in ubiquinone/menaquinone biosynthesis
[Clostridium sp. BNL1100]
gi|373946704|gb|AEY67625.1| methylase involved in ubiquinone/menaquinone biosynthesis
[Clostridium sp. BNL1100]
Length = 271
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
G+TV+D G G D L+ K V + G VYGLD+ T +L+ +K
Sbjct: 76 GETVLDLGSGGGIDVLISSKYVGE---TGKVYGLDM-------TDEMLELANQNKKKSGA 125
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGL 214
K +E+I + V +V N VI SE + AL A R+L GG
Sbjct: 126 KNVEFIKGYIEDIPLQDETVDVVTSNC---------VINLSENKEDALGEAYRVLKKGGR 176
Query: 215 ISMVVYVGHPGGREEL-EAVEAF----ARSLSVDDW--ICCKFQMLNRPLAPVLVF 263
+++ V +E+ E+++ + + +L+V+D+ I K + PV ++
Sbjct: 177 LAIADIVQLKEVSDEIRESIQMWVGCISGALTVEDYKRILKKVGFKEIEITPVNIY 232
>gi|226226674|ref|YP_002760780.1| putative methyltransferase [Gemmatimonas aurantiaca T-27]
gi|226089865|dbj|BAH38310.1| putative methyltransferase [Gemmatimonas aurantiaca T-27]
Length = 287
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 22/182 (12%)
Query: 44 SSSCCSAASFQQKQSCSTNNCTPLPLCKDSPLSGTLITIA-ANGVWKHVVRKGDTVVDAT 102
+SSCC +F T+N + P + L ++ N + +G+TV+D
Sbjct: 33 ASSCCGGTAFNGSVDPITSNLYVSGETSELPDNAVLASLGCGNPTALAELAEGETVLDLG 92
Query: 103 CGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162
G G D ++ + V + G V+GLD+ T +L AE+ V
Sbjct: 93 SGGGIDVILSARRVG---ATGKVFGLDM-------TDDMLALARQNAEEAGVTNVQFLKG 142
Query: 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG--LISMVVY 220
+E I +V ++ N VI S +M + A R+L PGG +S VV
Sbjct: 143 HIEAIPLPDNSVDVIISNC---------VINLSGDKEMVINEAFRVLRPGGRFAVSDVVV 193
Query: 221 VG 222
G
Sbjct: 194 RG 195
>gi|384179855|ref|YP_005565617.1| hypothetical protein YBT020_09765 [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324325939|gb|ADY21199.1| hypothetical protein YBT020_09765 [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 676
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 12/125 (9%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + +L K ++
Sbjct: 417 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVI---DTLKKKKQNEGRSWY 469
Query: 154 V---KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
V N+ S +E V ++ Y+ K E K L++A +L
Sbjct: 470 VIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKF--NHEVIKKGLQSAYEVLK 527
Query: 211 PGGLI 215
PGG I
Sbjct: 528 PGGRI 532
>gi|119177743|ref|XP_001240610.1| hypothetical protein CIMG_07773 [Coccidioides immitis RS]
Length = 577
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 42/174 (24%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++G+TVVD G G+D + K V + G V G+D+ + L+ +K T+KA+
Sbjct: 370 LKEGETVVDFGSGAGFDVFLAAKRVG---ATGKVIGVDMNKDMLERAHK--NKETAKADN 424
Query: 152 GLVKLFNMCHSRMEEI-VPKSTAVRLVA---FNLGYLPGGDKSVITTSETTKMALEAAER 207
+ SR+ ++ +P +TA +++ NL +P +K ++ R
Sbjct: 425 -----VSFVESRITDVKLPDATADCIISNCVVNL--VPEAEKQLV---------FNEMFR 468
Query: 208 ILIPGGLIS-----------------MVVYVGHPGGREELEAVEAFARSLSVDD 244
+L PGG ++ M +YVG G ++ + + R+ +D
Sbjct: 469 LLKPGGRVAISDILARKELPPEIRNDMALYVGCVAGASQVSGYQQYFRNAGFND 522
>gi|198282338|ref|YP_002218659.1| type 11 methyltransferase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198246859|gb|ACH82452.1| Methyltransferase type 11 [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 202
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 29/141 (20%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSL---LDKTTSK 148
V+ G TV+D CG+GY T + + V D G + G D+ + L + +S+ L+ T
Sbjct: 37 VKPGITVLDLCCGDGYFTAALARQVED----GRILGFDLDEQMLAAAASVCAGLENCTFL 92
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
+ + ++P+ L+A +P E T +A E A R+
Sbjct: 93 QGDAMA---------LHRLLPEPVDYCLMANTFHGVP----------EQTVLAREIA-RV 132
Query: 209 LIPGGLISMVVYVGHPGGREE 229
L PGGL ++V + P REE
Sbjct: 133 LKPGGLFAVVNWHARP--REE 151
>gi|156742284|ref|YP_001432413.1| type 11 methyltransferase [Roseiflexus castenholzii DSM 13941]
gi|156233612|gb|ABU58395.1| Methyltransferase type 11 [Roseiflexus castenholzii DSM 13941]
Length = 276
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+R G+ V+D G G D L+ + V + G VYGLD+ E L S+ + +AE
Sbjct: 73 LRMGEVVLDLGSGGGLDVLLAAQRVG---ATGYVYGLDMTDEML----SVARRNAERAEA 125
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V+ +E I S V ++ N VI + +AL A R+L P
Sbjct: 126 TNVEFLK---GDIERIPLPSNTVDVIISN---------CVINLTPDKALALGEAFRVLKP 173
Query: 212 GGLISM 217
GG +++
Sbjct: 174 GGRLAI 179
>gi|386002230|ref|YP_005920529.1| Methyltransferase, putative [Methanosaeta harundinacea 6Ac]
gi|357210286|gb|AET64906.1| Methyltransferase, putative [Methanosaeta harundinacea 6Ac]
Length = 291
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+R+G+TV+D G G+D+ + V G V G+D+ T ++++ + AE
Sbjct: 82 IREGETVLDLGSGAGFDSFLAASKVG---PRGKVIGIDM-------TEEMVERARANAEA 131
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
G K +E I + +V LV N VI + A + A R+L P
Sbjct: 132 GGFKNVEFRLGEIESIPAEDGSVDLVISNC---------VINLVLDKEAAFKEAYRVLRP 182
Query: 212 GGLISM 217
GG +++
Sbjct: 183 GGRLAV 188
>gi|229172564|ref|ZP_04300123.1| Methyltransferase [Bacillus cereus MM3]
gi|228611035|gb|EEK68298.1| Methyltransferase [Bacillus cereus MM3]
Length = 681
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 18/128 (14%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG- 152
KGDT+VD G G +ML M+ +E+ +YG+DI + + K ++G
Sbjct: 422 KGDTIVDVGSGGG----VMLDMIEEETGDKRIYGIDISENVIDTLKK------KKQDEGR 471
Query: 153 ---LVK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAER 207
++K N+ S +E V ++ Y+ K E K LE+A
Sbjct: 472 SWDVIKGDAINLSSSFDKESVDTIVYSSILHELFSYIEYEGKKF--NHEVIKKGLESAYE 529
Query: 208 ILIPGGLI 215
+L PGG I
Sbjct: 530 VLKPGGRI 537
>gi|423552357|ref|ZP_17528684.1| hypothetical protein IGW_02988 [Bacillus cereus ISP3191]
gi|401186299|gb|EJQ93387.1| hypothetical protein IGW_02988 [Bacillus cereus ISP3191]
Length = 676
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K + +
Sbjct: 417 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNERRSWNV 470
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L+ A +L P
Sbjct: 471 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQTAYEVLKP 528
Query: 212 GGLI 215
GG I
Sbjct: 529 GGRI 532
>gi|392407568|ref|YP_006444176.1| methylase [Anaerobaculum mobile DSM 13181]
gi|390620704|gb|AFM21851.1| methylase involved in ubiquinone/menaquinone biosynthesis
[Anaerobaculum mobile DSM 13181]
Length = 266
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 32/174 (18%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++GD V+D G G D + K+V D +G VYGLD+ + L +L ++ KA
Sbjct: 71 LKEGDVVLDLGSGGGIDAFLAAKIVGD---SGKVYGLDMTDDML----ALAEENRKKA-- 121
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
GL+ + +E+I +V +V N V+ SE + R++
Sbjct: 122 GLMNV-EFIKGYIEDIPLPDESVDVVISN---------CVVNLSEDKEKVFREIYRVIKK 171
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC-----KFQMLNRPLAPV 260
GG +S+ V L+ V R ++ D W+ C LN+ LA V
Sbjct: 172 GGHLSIADIV-------TLKEVPDSVRQMT-DLWVSCIAGSMPVDELNKTLAHV 217
>gi|395644741|ref|ZP_10432601.1| Methyltransferase type 11 [Methanofollis liminatans DSM 4140]
gi|395441481|gb|EJG06238.1| Methyltransferase type 11 [Methanofollis liminatans DSM 4140]
Length = 198
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 17/127 (13%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ GDTV+D CG G+ M MV +E GCV D+Q E L ++L + + +
Sbjct: 42 ISPGDTVLDIGCGPGFFARPMAAMVGEE---GCVIAADLQEEML----AMLAERAGR--E 92
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
GL+ + R E P T + V F L + V+ + L L P
Sbjct: 93 GLLDRIRL--HRTEPGSPGFTGLGPVDFALAFY------VVHEVPDGEGLLREVAVALRP 144
Query: 212 GGLISMV 218
GGL+ +V
Sbjct: 145 GGLMLLV 151
>gi|218903026|ref|YP_002450860.1| hypothetical protein BCAH820_1909 [Bacillus cereus AH820]
gi|218538650|gb|ACK91048.1| hypothetical protein BCAH820_1909 [Bacillus cereus AH820]
Length = 676
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 417 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 470
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ K E K L++A +L P
Sbjct: 471 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKF--NHEVIKKGLQSAYEVLKP 528
Query: 212 GGLI 215
GG I
Sbjct: 529 GGRI 532
>gi|392997100|gb|AFM97243.1| arsenite S-adenosylmethyltransferase, partial [uncultured
bacterium]
Length = 116
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 19/122 (15%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++G+ V+D G G D L+ K V G YGLD+ T +LD A +
Sbjct: 13 LKEGEVVLDLGSGGGIDVLLSAKRVG---PTGKAYGLDM-------TDEMLDLARKNAAE 62
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
R+EEI S V ++ N VI S LE A R+L P
Sbjct: 63 VGATNVEFLRGRIEEIPLPSNTVDVIISN---------CVINLSADKGKVLEEAFRVLKP 113
Query: 212 GG 213
GG
Sbjct: 114 GG 115
>gi|254723999|ref|ZP_05185785.1| hypothetical protein BantA1_16273 [Bacillus anthracis str. A1055]
Length = 676
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 417 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 470
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ K E K L++A +L P
Sbjct: 471 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKF--NHEVIKKGLQSAYEVLKP 528
Query: 212 GGLI 215
GG I
Sbjct: 529 GGRI 532
>gi|65319190|ref|ZP_00392149.1| COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis
[Bacillus anthracis str. A2012]
Length = 681
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 422 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 475
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ K E K L++A +L P
Sbjct: 476 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKF--NHEVIKKGLQSAYEVLKP 533
Query: 212 GGLI 215
GG I
Sbjct: 534 GGRI 537
>gi|228933202|ref|ZP_04096058.1| Methyltransferase [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228826363|gb|EEM72140.1| Methyltransferase [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
Length = 681
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 422 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 475
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ K E K L++A +L P
Sbjct: 476 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKF--NHEVIKKGLQSAYEVLKP 533
Query: 212 GGLI 215
GG I
Sbjct: 534 GGRI 537
>gi|165869546|ref|ZP_02214205.1| hypothetical protein BAC_1890 [Bacillus anthracis str. A0488]
gi|167633464|ref|ZP_02391789.1| hypothetical protein BAH_1918 [Bacillus anthracis str. A0442]
gi|167638860|ref|ZP_02397135.1| hypothetical protein BAQ_1919 [Bacillus anthracis str. A0193]
gi|170686024|ref|ZP_02877246.1| hypothetical protein BAM_1915 [Bacillus anthracis str. A0465]
gi|170707333|ref|ZP_02897788.1| hypothetical protein BAK_1952 [Bacillus anthracis str. A0389]
gi|177650449|ref|ZP_02933416.1| hypothetical protein BAO_1863 [Bacillus anthracis str. A0174]
gi|190566283|ref|ZP_03019201.1| hypothetical protein BATI_1796 [Bacillus anthracis str.
Tsiankovskii-I]
gi|227815308|ref|YP_002815317.1| hypothetical protein BAMEG_2720 [Bacillus anthracis str. CDC 684]
gi|229600059|ref|YP_002866286.1| hypothetical protein BAA_1940 [Bacillus anthracis str. A0248]
gi|254684472|ref|ZP_05148332.1| hypothetical protein BantC_11525 [Bacillus anthracis str.
CNEVA-9066]
gi|254734775|ref|ZP_05192487.1| hypothetical protein BantWNA_06340 [Bacillus anthracis str. Western
North America USA6153]
gi|254741177|ref|ZP_05198865.1| hypothetical protein BantKB_09222 [Bacillus anthracis str. Kruger
B]
gi|254755428|ref|ZP_05207462.1| hypothetical protein BantV_23402 [Bacillus anthracis str. Vollum]
gi|254759965|ref|ZP_05211989.1| hypothetical protein BantA9_16766 [Bacillus anthracis str.
Australia 94]
gi|421635702|ref|ZP_16076301.1| hypothetical protein BABF1_00400 [Bacillus anthracis str. BF1]
gi|164714986|gb|EDR20504.1| hypothetical protein BAC_1890 [Bacillus anthracis str. A0488]
gi|167513324|gb|EDR88695.1| hypothetical protein BAQ_1919 [Bacillus anthracis str. A0193]
gi|167531502|gb|EDR94180.1| hypothetical protein BAH_1918 [Bacillus anthracis str. A0442]
gi|170127832|gb|EDS96704.1| hypothetical protein BAK_1952 [Bacillus anthracis str. A0389]
gi|170669721|gb|EDT20462.1| hypothetical protein BAM_1915 [Bacillus anthracis str. A0465]
gi|172083593|gb|EDT68653.1| hypothetical protein BAO_1863 [Bacillus anthracis str. A0174]
gi|190562418|gb|EDV16385.1| hypothetical protein BATI_1796 [Bacillus anthracis str.
Tsiankovskii-I]
gi|227002878|gb|ACP12621.1| hypothetical protein BAMEG_2720 [Bacillus anthracis str. CDC 684]
gi|229264467|gb|ACQ46104.1| hypothetical protein BAA_1940 [Bacillus anthracis str. A0248]
gi|403396230|gb|EJY93467.1| hypothetical protein BABF1_00400 [Bacillus anthracis str. BF1]
Length = 676
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 417 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 470
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ K E K L++A +L P
Sbjct: 471 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKF--NHEVIKKGLQSAYEVLKP 528
Query: 212 GGLI 215
GG I
Sbjct: 529 GGRI 532
>gi|49480550|ref|YP_036044.1| hypothetical protein BT9727_1712 [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49332106|gb|AAT62752.1| methyltransferase [Bacillus thuringiensis serovar konkukian str.
97-27]
Length = 681
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 422 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 475
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ K E K L++A +L P
Sbjct: 476 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKF--NHEVIKKGLQSAYEVLKP 533
Query: 212 GGLI 215
GG I
Sbjct: 534 GGRI 537
>gi|30261913|ref|NP_844290.1| hypothetical protein BA_1874 [Bacillus anthracis str. Ames]
gi|47527166|ref|YP_018515.1| hypothetical protein GBAA_1874 [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184748|ref|YP_028000.1| hypothetical protein BAS1736 [Bacillus anthracis str. Sterne]
gi|30256539|gb|AAP25776.1| hypothetical protein BA_1874 [Bacillus anthracis str. Ames]
gi|47502314|gb|AAT30990.1| hypothetical protein GBAA_1874 [Bacillus anthracis str. 'Ames
Ancestor']
gi|49178675|gb|AAT54051.1| hypothetical protein BAS1736 [Bacillus anthracis str. Sterne]
Length = 681
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 422 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 475
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ K E K L++A +L P
Sbjct: 476 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKF--NHEVIKKGLQSAYEVLKP 533
Query: 212 GGLI 215
GG I
Sbjct: 534 GGRI 537
>gi|418055126|ref|ZP_12693181.1| multicopper oxidase type 2 [Hyphomicrobium denitrificans 1NES1]
gi|353210708|gb|EHB76109.1| multicopper oxidase type 2 [Hyphomicrobium denitrificans 1NES1]
Length = 484
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS-KAEK 151
R GD +D G +TL L ADE + + G ++ + +L + ++
Sbjct: 182 RGGDMAMDVLAGTPIETLQKLGQRADEEAQEKIKGFEVGYDLFSINGKMLGHGEPIRVKQ 241
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
G LF++ ++ EI + A+ AF + L G V T +E + L AER
Sbjct: 242 GDRVLFHVLNASATEI--RGLALPGHAFRIVALDG--NPVPTQAEVPMLWLGTAER---- 293
Query: 212 GGLISMVVYVGHPG 225
IS VV + HPG
Sbjct: 294 ---ISAVVEMNHPG 304
>gi|196033504|ref|ZP_03100916.1| hypothetical protein BCW_1832 [Bacillus cereus W]
gi|195993938|gb|EDX57894.1| hypothetical protein BCW_1832 [Bacillus cereus W]
Length = 676
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 417 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 470
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ K E K L++A +L P
Sbjct: 471 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKF--NHEVIKKGLQSAYEVLKP 528
Query: 212 GGLI 215
GG I
Sbjct: 529 GGRI 532
>gi|228926970|ref|ZP_04090036.1| Methyltransferase [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228832705|gb|EEM78276.1| Methyltransferase [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
Length = 681
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 422 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 475
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ K E K L++A +L P
Sbjct: 476 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKF--NHEVIKKGLQSAYEVLKP 533
Query: 212 GGLI 215
GG I
Sbjct: 534 GGRI 537
>gi|157813742|gb|ABV81616.1| putative protein arginine N-methyltransferase 1 [Mesocyclops edax]
Length = 244
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 17/96 (17%)
Query: 85 NGVW--KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142
N +W KH+ KG V+D CG G +L M A ++ A VYG+D+ S ++
Sbjct: 12 NSMWHNKHLF-KGKIVLDVGCGTG-----ILSMFAAKAGAEHVYGIDM--------SGIV 57
Query: 143 DKTTSKAEK-GLVKLFNMCHSRMEEIVPKSTAVRLV 177
++ + EK GL + +MEEIV T V ++
Sbjct: 58 EQAKNIVEKNGLADKVTIIRGKMEEIVLPVTKVDII 93
>gi|228945521|ref|ZP_04107871.1| Methyltransferase [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228814039|gb|EEM60310.1| Methyltransferase [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
Length = 681
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 422 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 475
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ K E K L++A +L P
Sbjct: 476 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKF--NHEVIKKGLQSAYEVLKP 533
Query: 212 GGLI 215
GG I
Sbjct: 534 GGRI 537
>gi|229102498|ref|ZP_04233204.1| Methyltransferase [Bacillus cereus Rock3-28]
gi|228680888|gb|EEL35059.1| Methyltransferase [Bacillus cereus Rock3-28]
Length = 681
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 422 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWDV 475
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ K E K L++A +L P
Sbjct: 476 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKF--NHEVIKKGLQSAYEVLKP 533
Query: 212 GGLI 215
GG I
Sbjct: 534 GGRI 537
>gi|289522593|ref|ZP_06439447.1| methyltransferase, UbiE/COQ5 family [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289504429|gb|EFD25593.1| methyltransferase, UbiE/COQ5 family [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 266
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 32/174 (18%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++GD V+D G G D + K+V D +G VYGLD+ + L +L ++ KA
Sbjct: 71 LKEGDVVLDLGSGGGIDAFLAAKIVGD---SGKVYGLDMTDDML----ALAEENRKKA-- 121
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
GL + +E+I +V +V N V+ SE + R++
Sbjct: 122 GLTNV-EFIKGYIEDIPLPDESVDVVISN---------CVVNLSEDKEKVFREIYRVIKK 171
Query: 212 GGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC-----KFQMLNRPLAPV 260
GG +S+ V L+ V R ++ D W+ C LN+ LA V
Sbjct: 172 GGHLSIADIV-------TLKEVPDRVRQIT-DLWVSCIAGSMPVDELNKTLAHV 217
>gi|340781298|ref|YP_004747905.1| type 11 methyltransferase [Acidithiobacillus caldus SM-1]
gi|340782640|ref|YP_004749247.1| type 11 methyltransferase [Acidithiobacillus caldus SM-1]
gi|340555451|gb|AEK57205.1| Methyltransferase type 11 [Acidithiobacillus caldus SM-1]
gi|340556792|gb|AEK58546.1| Methyltransferase type 11 [Acidithiobacillus caldus SM-1]
Length = 202
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 27/140 (19%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V G +V+D CG+GY T + K V + G V+GLD+ + L S A
Sbjct: 37 VTTGMSVLDLCCGDGYFTAALAKQVEN----GEVFGLDLDEQMLAVAES--------ACA 84
Query: 152 GLVKLFNMCHSRME--EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
GL + M+ +++PK L+A +P E T +A E A R+L
Sbjct: 85 GLRNCSFLQGDAMDLHQLLPKPVDYCLMANTFHGVP----------EQTALAREIA-RVL 133
Query: 210 IPGGLISMVVYVGHPGGREE 229
PGGL ++V + H REE
Sbjct: 134 KPGGLFAVVNW--HACPREE 151
>gi|427795259|gb|JAA63081.1| Putative protein arginine n-methyltransferase prmt1, partial
[Rhipicephalus pulchellus]
Length = 506
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 21/123 (17%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
+ TV+D CG G +L M+ + A V G+D QS + ++ E GL
Sbjct: 232 RNRTVLDVGCGTG-----ILSMLCARAGAQSVVGID-QSGVVYCAMDIV------RENGL 279
Query: 154 VKLFNMCHSRMEEI-VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212
+ N+ H R+EE+ +P+ V LV+ +GY + L+A +R+L PG
Sbjct: 280 SERVNLVHGRVEELELPERVDV-LVSEWMGYF-------LLFEGMLDSVLQARDRLLRPG 331
Query: 213 GLI 215
GL+
Sbjct: 332 GLM 334
>gi|20091604|ref|NP_617679.1| hypothetical protein MA2781 [Methanosarcina acetivorans C2A]
gi|19916767|gb|AAM06159.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 197
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALK 136
+++G TV+D CG G+ +L M K+V +E G V +DIQ E L+
Sbjct: 36 IKEGQTVLDLGCGPGFFSLAMAKLVGEE---GRVISVDIQDEMLQ 77
>gi|398346701|ref|ZP_10531404.1| arsenite methyltransferase [Leptospira broomii str. 5399]
Length = 351
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK--AEKG 152
G TV+D CG+G D ++ K+V ++ G V G+D+ E L+ SS D ++ E
Sbjct: 70 GKTVLDLGCGSGRDVYLLSKLVGED---GSVIGVDMTEEQLRVASSHQDYHRNQFGYENS 126
Query: 153 LVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212
V +E + + +V LV N VI S R+L PG
Sbjct: 127 NVSFKRGYIEDLESLGIEDNSVDLVVSN---------CVINLSPNKASVFSEIFRVLRPG 177
Query: 213 G 213
G
Sbjct: 178 G 178
>gi|410666816|ref|YP_006919187.1| S-adenosyl-L-methionine:arsenic(III) methyltransferase ArsM
[Thermacetogenium phaeum DSM 12270]
gi|409104563|gb|AFV10688.1| S-adenosyl-L-methionine:arsenic(III) methyltransferase ArsM
[Thermacetogenium phaeum DSM 12270]
Length = 269
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 25/129 (19%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALK---STSSLLDKTTSK 148
+++G+TV+D G G D L + V +G VYGLD+ E L+ L+ T +
Sbjct: 74 LKEGETVLDLGSGGGIDVLAASRYVG---QSGKVYGLDMTEEMLELANQNRELMGATNVE 130
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
KG + EEI AV +V N VI S + A R+
Sbjct: 131 FLKGFI----------EEIPLPDEAVDVVISN---------CVINLSGDKEKAFREVYRV 171
Query: 209 LIPGGLISM 217
L PGG +++
Sbjct: 172 LKPGGRLAI 180
>gi|383450424|ref|YP_005357145.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
[Flavobacterium indicum GPTSA100-9]
gi|380502046|emb|CCG53088.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
[Flavobacterium indicum GPTSA100-9]
Length = 213
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144
V+KGD V++ G+GY T +++ M A VY ++ Q+E KSTS LL K
Sbjct: 78 VKKGDNVLEIGTGSGYQTAVLVTMGAK------VYSVERQNELFKSTSLLLPK 124
>gi|294495955|ref|YP_003542448.1| methyltransferase type 11 [Methanohalophilus mahii DSM 5219]
gi|292666954|gb|ADE36803.1| Methyltransferase type 11 [Methanohalophilus mahii DSM 5219]
Length = 161
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++KGDTVV+ CG G + ++ + + E G + G+DI T +L+K +K
Sbjct: 47 IKKGDTVVELGCGTGLNFPLLQQKIGKE---GKIIGVDI-------TDKMLEKAEKWVKK 96
Query: 152 GLVKLFNMCHSRMEEI-VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
+ + H + + +PK F L P DK + SE+ +E
Sbjct: 97 NNWENVELVHCDVSQYNIPKGVGAVFSTFALTLSPDYDKVIRNCSESLSKVVE 149
>gi|134299619|ref|YP_001113115.1| creatinase [Desulfotomaculum reducens MI-1]
gi|134052319|gb|ABO50290.1| creatinase [Desulfotomaculum reducens MI-1]
Length = 397
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 20/143 (13%)
Query: 19 AIP---RNTLLPFPAAALSKANVNVLRFSSSCCSAASFQQK----QSCSTNNCTPLPLCK 71
A+P R +L AAL +A + R S CC +F Q +C T N P
Sbjct: 161 AVPTFLREGMLEIELAALFEAEMRK-RGYSGCCKMRAFNQDLFLGNTC-TGNSASTPSFF 218
Query: 72 DSPLSGTLITIAA--NGVWKHVVRKGDTVVDATC-GNGYDTLMMLKMVADESSAGCVYGL 128
D P+ GT +++ WK V R +D TC +GY D++ C+ L
Sbjct: 219 DGPVGGTGVSVTHPHGAGWKKVCRNEVVYIDYTCVVHGY--------TGDQTRIFCIGEL 270
Query: 129 DIQSEALKSTSSLLDKTTSKAEK 151
+ Q E + L+ KA K
Sbjct: 271 NQQMEKAFDAALLIQSEIIKAIK 293
>gi|390562890|ref|ZP_10245054.1| Predicted methyltransferase (fragment) [Nitrolancetus hollandicus
Lb]
gi|390172542|emb|CCF84367.1| Predicted methyltransferase (fragment) [Nitrolancetus hollandicus
Lb]
Length = 198
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 19/122 (15%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ G+ V+D CG G D L+ V G V GLD+ T +L++ +
Sbjct: 70 LQPGEVVLDIGCGTGIDLLLAAPQVG---PTGTVIGLDL-------TPEMLERAREHVTQ 119
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+ + MEEI T+V +V N V S A A R+L P
Sbjct: 120 AGLTNVELLPGSMEEIPLPDTSVDVVISN---------GVFNLSTKKDQAFAEAYRVLRP 170
Query: 212 GG 213
GG
Sbjct: 171 GG 172
>gi|228985002|ref|ZP_04145170.1| Methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|228774690|gb|EEM23088.1| Methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
Length = 681
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 422 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 475
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ ++ E K L++A +L P
Sbjct: 476 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRNF--NHEVIKKGLQSAYEVLKP 533
Query: 212 GGLI 215
GG I
Sbjct: 534 GGRI 537
>gi|262301003|gb|ACY43094.1| arg methyltransferase [Acanthocyclops vernalis]
Length = 244
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 33/139 (23%)
Query: 85 NGVW--KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI-----QSEALKS 137
N +W KH+ KG V+D CG G +L M A ++ A VYG+D+ Q+ A+
Sbjct: 12 NSMWHNKHLF-KGKIVLDVGCGTG-----ILSMFAAKAGAAHVYGIDMSGIVEQARAIVE 65
Query: 138 TSSLLDKTTSKAEKGLVKLFNMCHSRMEEI-VPKSTAVRLVAFNLGYLPGGDKSVITTSE 196
+ L DK T + +MEEI +P +++ +GY +
Sbjct: 66 RNGLADKVT------------IIRGKMEEIELPVQKVDIIISEWMGY-------CLFYES 106
Query: 197 TTKMALEAAERILIPGGLI 215
L A ++ L P GL+
Sbjct: 107 MLDTVLYARDKFLAPDGLM 125
>gi|261368779|ref|ZP_05981662.1| putative rRNA methylase, partial [Subdoligranulum variabile DSM
15176]
gi|282569124|gb|EFB74659.1| acetyltransferase, GNAT family, partial [Subdoligranulum variabile
DSM 15176]
Length = 159
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
G +DATCGNG+DT + ++ + G V LDIQ A+++T++
Sbjct: 116 GGFCIDATCGNGHDTEFLCRLAGPQ---GRVLALDIQPRAVEATNA 158
>gi|229155487|ref|ZP_04283595.1| Methyltransferase [Bacillus cereus ATCC 4342]
gi|228627805|gb|EEK84524.1| Methyltransferase [Bacillus cereus ATCC 4342]
Length = 681
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 422 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 475
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L++A +L P
Sbjct: 476 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQSAYEVLKP 533
Query: 212 GGLI 215
GG I
Sbjct: 534 GGRI 537
>gi|52143548|ref|YP_083281.1| hypothetical protein BCZK1686 [Bacillus cereus E33L]
gi|51977017|gb|AAU18567.1| methyltransferase [Bacillus cereus E33L]
Length = 676
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 417 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 470
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L++A +L P
Sbjct: 471 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQSAYEVLKP 528
Query: 212 GGLI 215
GG I
Sbjct: 529 GGRI 532
>gi|302389182|ref|YP_003825003.1| arsenite methyltransferase [Thermosediminibacter oceani DSM 16646]
gi|302199810|gb|ADL07380.1| Arsenite methyltransferase [Thermosediminibacter oceani DSM 16646]
Length = 272
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 41/137 (29%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++G+TV+D G G D L+ K V D G VYGLD+ E L +L +K K
Sbjct: 73 LKEGETVLDLGSGGGIDVLIASKYVGD---TGKVYGLDMTDEML----ALANKNKEK--- 122
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGY---LPGGDKS--------VITTSETTKM 200
V V F GY +P GD++ VI E +
Sbjct: 123 --------------------MGVTNVEFIKGYIEDIPLGDETVDVIISNCVINLCEDKEK 162
Query: 201 ALEAAERILIPGGLISM 217
AL+ A R+L GG +++
Sbjct: 163 ALKEAYRVLKKGGRLAI 179
>gi|30019939|ref|NP_831570.1| hypothetical protein BC1797 [Bacillus cereus ATCC 14579]
gi|296502497|ref|YP_003664197.1| hypothetical protein BMB171_C1661 [Bacillus thuringiensis BMB171]
gi|423587659|ref|ZP_17563746.1| hypothetical protein IIE_03071 [Bacillus cereus VD045]
gi|29895484|gb|AAP08771.1| SAM-dependent methyltransferases [Bacillus cereus ATCC 14579]
gi|296323549|gb|ADH06477.1| hypothetical protein BMB171_C1661 [Bacillus thuringiensis BMB171]
gi|401227396|gb|EJR33925.1| hypothetical protein IIE_03071 [Bacillus cereus VD045]
Length = 676
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 417 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 470
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L++A +L P
Sbjct: 471 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQSAYEVLKP 528
Query: 212 GGLI 215
GG I
Sbjct: 529 GGRI 532
>gi|423629235|ref|ZP_17604983.1| hypothetical protein IK5_02086 [Bacillus cereus VD154]
gi|401267990|gb|EJR74045.1| hypothetical protein IK5_02086 [Bacillus cereus VD154]
Length = 676
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 417 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 470
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L++A +L P
Sbjct: 471 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQSAYEVLKP 528
Query: 212 GGLI 215
GG I
Sbjct: 529 GGRI 532
>gi|225863837|ref|YP_002749215.1| hypothetical protein BCA_1940 [Bacillus cereus 03BB102]
gi|225790941|gb|ACO31158.1| hypothetical protein BCA_1940 [Bacillus cereus 03BB102]
Length = 676
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 417 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 470
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L++A +L P
Sbjct: 471 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQSAYEVLKP 528
Query: 212 GGLI 215
GG I
Sbjct: 529 GGRI 532
>gi|116754726|ref|YP_843844.1| methyltransferase type 11 [Methanosaeta thermophila PT]
gi|116666177|gb|ABK15204.1| Methyltransferase type 11 [Methanosaeta thermophila PT]
Length = 262
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 45/217 (20%)
Query: 44 SSSCC---SAASFQQKQSCSTNNCTPLPLCKDSPLS-GTLITIAANGVWKHVVRKGDTVV 99
S SCC SAA ++ + P + L G + IA+ +++G+ V+
Sbjct: 29 SGSCCGTGSAAEISRRIGYTDEEMLSAPPESNLGLGCGNPVAIAS-------LKRGEYVL 81
Query: 100 DATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM 159
D G G+D + + V E G V G+D+ TS ++D+ A KG + +
Sbjct: 82 DMGSGAGFDCFLAARAVGPE---GMVIGVDM-------TSEMVDRARENARKGGYRNVDF 131
Query: 160 CHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG--LISM 217
+E + V ++ N VI + A R+L PGG +IS
Sbjct: 132 RQGELENLPVADNYVDVIMSNC---------VINLVPDKRRVFREAFRVLKPGGRLIISD 182
Query: 218 VVYVGHPGGREELEAV----EAF----ARSLSVDDWI 246
+V RE EAV EA+ A +++V+++I
Sbjct: 183 IVL-----KREIPEAVRRSKEAYVGCLAGAVTVEEYI 214
>gi|229127227|ref|ZP_04256224.1| Methyltransferase [Bacillus cereus BDRD-Cer4]
gi|229144517|ref|ZP_04272920.1| Methyltransferase [Bacillus cereus BDRD-ST24]
gi|228638930|gb|EEK95357.1| Methyltransferase [Bacillus cereus BDRD-ST24]
gi|228656343|gb|EEL12184.1| Methyltransferase [Bacillus cereus BDRD-Cer4]
Length = 681
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 422 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 475
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L++A +L P
Sbjct: 476 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQSAYEVLKP 533
Query: 212 GGLI 215
GG I
Sbjct: 534 GGRI 537
>gi|229184106|ref|ZP_04311317.1| Methyltransferase [Bacillus cereus BGSC 6E1]
gi|228599395|gb|EEK57004.1| Methyltransferase [Bacillus cereus BGSC 6E1]
Length = 681
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 422 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 475
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L++A +L P
Sbjct: 476 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQSAYEVLKP 533
Query: 212 GGLI 215
GG I
Sbjct: 534 GGRI 537
>gi|322367899|ref|ZP_08042468.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
gi|320551915|gb|EFW93560.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
Length = 226
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 89 KHV-----VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
KHV V GDTV+D CG+GY + V D AG VYGLD E ++ D
Sbjct: 28 KHVLARMPVEDGDTVLDLGCGSGY----AGRAVRDTKGAGRVYGLDGSPEMARNARGYTD 83
Query: 144 KTT 146
+
Sbjct: 84 DSN 86
>gi|320031997|gb|EFW13953.1| ubiE/COQ5 methyltransferase [Coccidioides posadasii str. Silveira]
Length = 272
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 42/176 (23%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++G+TVVD G G+D + K V + G V G+D+ + L+ +K T+KA+
Sbjct: 62 LKEGETVVDFGSGAGFDVFLAAKRVG---ATGKVIGVDMNKDMLERAHK--NKETAKADN 116
Query: 152 GLVKLFNMCHSRMEEI-VPKSTAVRLVA---FNLGYLPGGDKSVITTSETTKMALEAAER 207
+ SR+ ++ +P +TA +++ NL +P +K ++ R
Sbjct: 117 -----VSFVESRITDVKLPDATADCIISNCVVNL--VPEAEKQLV---------FNEMFR 160
Query: 208 ILIPGGLIS-----------------MVVYVGHPGGREELEAVEAFARSLSVDDWI 246
+L PGG ++ M +YVG G ++ + + R+ +D +
Sbjct: 161 LLKPGGRVAISDILARKELPPEIRNDMALYVGCVAGASQVSGYQQYFRNAGFNDSV 216
>gi|154482529|ref|ZP_02024977.1| hypothetical protein EUBVEN_00196 [Eubacterium ventriosum ATCC
27560]
gi|149736554|gb|EDM52440.1| S-adenosyl-methyltransferase MraW [Eubacterium ventriosum ATCC
27560]
Length = 365
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 50 AASFQQKQSCSTNNCTPLPLCKDSPLSGTLITIAANGVWKHV-VRKGDTVVDATCGNGYD 108
A +++ + + K S +G I+I + + + ++ G +DAT G G
Sbjct: 39 AEKYKEHNPEKYKDTIEKVISKGSTPAGMHISICVKEILEFLDIKPGQIGLDATLGYGGH 98
Query: 109 TLMMLKMVADESSAGCVYGLDIQS-EALKSTSSLLDKTTSK 148
TL MLK + G +YGLDI E K+T L DK K
Sbjct: 99 TLQMLKKL---DRKGHIYGLDIDPIEIKKTTKRLADKGFGK 136
>gi|228914501|ref|ZP_04078110.1| Methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|228844820|gb|EEM89862.1| Methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
Length = 681
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 422 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 475
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L++A +L P
Sbjct: 476 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQSAYEVLKP 533
Query: 212 GGLI 215
GG I
Sbjct: 534 GGRI 537
>gi|228958186|ref|ZP_04119917.1| Methyltransferase [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|228801493|gb|EEM48379.1| Methyltransferase [Bacillus thuringiensis serovar pakistani str.
T13001]
Length = 681
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 422 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 475
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L++A +L P
Sbjct: 476 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQSAYEVLKP 533
Query: 212 GGLI 215
GG I
Sbjct: 534 GGRI 537
>gi|303315797|ref|XP_003067903.1| methyltransferase, UbiE/COQ5 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240107579|gb|EER25758.1| methyltransferase, UbiE/COQ5 family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 273
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 42/176 (23%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++G+TVVD G G+D + K V + G V G+D+ + L+ +K T+KA+
Sbjct: 62 LKEGETVVDFGSGAGFDVFLAAKRVG---ATGKVIGVDMNKDMLERAHK--NKETAKADN 116
Query: 152 GLVKLFNMCHSRMEEI-VPKSTAVRLVA---FNLGYLPGGDKSVITTSETTKMALEAAER 207
+ SR+ ++ +P +TA +++ NL +P +K ++ R
Sbjct: 117 -----VSFVESRITDVKLPDATADCIISNCVVNL--VPEAEKQLV---------FNEMFR 160
Query: 208 ILIPGGLIS-----------------MVVYVGHPGGREELEAVEAFARSLSVDDWI 246
+L PGG ++ M +YVG G ++ + + R+ +D +
Sbjct: 161 LLKPGGRVAISDILARKELPPEIRNDMALYVGCVAGASQVSGYQQYFRNAGFNDSV 216
>gi|406913739|gb|EKD53077.1| arsenite S-adenosylmethyltransferase [uncultured bacterium]
Length = 244
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 21/132 (15%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ +G+ V+D G G+D+ + K V D +G V+G+D+ T +L+K A+K
Sbjct: 70 LEEGNVVLDLGSGAGFDSFLAAKKVGD---SGKVFGVDM-------TDEMLEKARENAKK 119
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
G + +E++ + ++ ++ N VI + + + A R+L
Sbjct: 120 GGITNVEFRKGDIEDLPVEDNSIDVIISN---------CVINLAPDKERVFKEAYRVLKT 170
Query: 212 GG--LISMVVYV 221
GG ++S VV V
Sbjct: 171 GGRLMVSDVVLV 182
>gi|392867424|gb|EAS29350.2| ubiE/COQ5 methyltransferase [Coccidioides immitis RS]
Length = 272
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 42/176 (23%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++G+TVVD G G+D + K V + G V G+D+ + L+ +K T+KA+
Sbjct: 62 LKEGETVVDFGSGAGFDVFLAAKRVG---ATGKVIGVDMNKDMLERAHK--NKETAKADN 116
Query: 152 GLVKLFNMCHSRMEEI-VPKSTAVRLVA---FNLGYLPGGDKSVITTSETTKMALEAAER 207
+ SR+ ++ +P +TA +++ NL +P +K ++ R
Sbjct: 117 -----VSFVESRITDVKLPDATADCIISNCVVNL--VPEAEKQLV---------FNEMFR 160
Query: 208 ILIPGGLIS-----------------MVVYVGHPGGREELEAVEAFARSLSVDDWI 246
+L PGG ++ M +YVG G ++ + + R+ +D +
Sbjct: 161 LLKPGGRVAISDILARKELPPEIRNDMALYVGCVAGASQVSGYQQYFRNAGFNDSV 216
>gi|406981995|gb|EKE03369.1| hypothetical protein ACD_20C00211G0003 [uncultured bacterium]
Length = 260
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++G+TV+D G G D LM K V S +YGLD+ E L +L +K EK
Sbjct: 68 LKEGETVLDLGSGGGIDVLMSSKYVGKTSR---IYGLDMTDEML----ALANKNK---EK 117
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V +E I V +V N VI SE K AL A R+L
Sbjct: 118 MGVTNVEFIKGYIENIPLPDKTVDVVISN---------CVINLSEDKKKALSEACRVLKD 168
Query: 212 GGLISM 217
GG +++
Sbjct: 169 GGRLAI 174
>gi|312881127|ref|ZP_07740927.1| Methyltransferase type 11 [Aminomonas paucivorans DSM 12260]
gi|310784418|gb|EFQ24816.1| Methyltransferase type 11 [Aminomonas paucivorans DSM 12260]
Length = 281
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 19/138 (13%)
Query: 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
N + +R G+TV+D CG G D + + G VYGLD+ T +L+
Sbjct: 75 GNPIEAAGIRPGETVLDLGCGAGLDAFL---AAGETGPTGKVYGLDM-------TEEMLE 124
Query: 144 KTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203
E ++ ME I +V LV N V+ S
Sbjct: 125 TARRNREAWGLENVEFLRGEMESIPLPDGSVDLVVSNC---------VLNLSPEKDRVFR 175
Query: 204 AAERILIPGGLISMVVYV 221
R+L PGG +++ V
Sbjct: 176 EIVRVLRPGGRMAVADVV 193
>gi|386735643|ref|YP_006208824.1| Methyltransferase [Bacillus anthracis str. H9401]
gi|384385495|gb|AFH83156.1| Methyltransferase [Bacillus anthracis str. H9401]
Length = 275
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK-G 152
KGDT+VD G G +ML M+ +E+ +YG+DI + +L K ++
Sbjct: 16 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVI---DTLKKKKQNEGRSWN 68
Query: 153 LVK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
++K N+ S +E V ++ Y+ K E K L++A +L
Sbjct: 69 VIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKF--NHEVIKKGLQSAYEVLK 126
Query: 211 PGGLI 215
PGG I
Sbjct: 127 PGGRI 131
>gi|258576853|ref|XP_002542608.1| hypothetical protein UREG_02124 [Uncinocarpus reesii 1704]
gi|237902874|gb|EEP77275.1| hypothetical protein UREG_02124 [Uncinocarpus reesii 1704]
Length = 279
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 35/176 (19%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++G+TV+D G G+D + K + S G G+D+ +L++ E
Sbjct: 62 LKEGETVIDFGSGAGFDVFLAAKSIG---STGKAIGVDMNQVGYPLDLDMLERANKNKEA 118
Query: 152 GLVKLFNMCHSRMEEI-VPKSTAVRLVA---FNLGYLPGGDKSVITTSETTKMALEAAER 207
+ + SR+ ++ +P +TA +++ NL +P +K ++ R
Sbjct: 119 AKAENVSFVESRITDVKLPDATADCIISNCVVNL--VPEAEKQLV---------FNEMYR 167
Query: 208 ILIPGGLIS-----------------MVVYVGHPGGREELEAVEAFARSLSVDDWI 246
+L PGG ++ M +YVG G ++ A + + R+ D +
Sbjct: 168 LLKPGGRVAISDILARKELPPEIRNDMALYVGCVAGASQISAYQQYFRNAGFADAV 223
>gi|150391505|ref|YP_001321554.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens
QYMF]
gi|263433292|sp|A6TUM7.1|RSMH2_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase H 2;
AltName: Full=16S rRNA m(4)C1402 methyltransferase 2;
AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
RsmH 2
gi|149951367|gb|ABR49895.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens
QYMF]
Length = 349
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 69 LCKDSPLSGTLITIAANGVWKHV-VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYG 127
+ K S +G +I N + + + + G T +DAT G G TL MLK + +S G +Y
Sbjct: 42 IQKGSTPAGMHRSICVNEILEFLKITPGQTGLDATLGYGGHTLEMLKRL---NSKGHLYA 98
Query: 128 LDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLG 182
+D+ S L T L+ +E ++ + M S +++I +S + V +LG
Sbjct: 99 IDVDSIELPRTQERLEGLGYGSE--ILTIKQMNFSNIDQIALESGPLNFVLADLG 151
>gi|376265761|ref|YP_005118473.1| SAM-dependent methyltransferase [Bacillus cereus F837/76]
gi|364511561|gb|AEW54960.1| SAM-dependent methyltransferase [Bacillus cereus F837/76]
Length = 676
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 417 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 470
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L+ A +L P
Sbjct: 471 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQTAYEVLKP 528
Query: 212 GGLI 215
GG I
Sbjct: 529 GGRI 532
>gi|332672134|ref|YP_004455142.1| type 11 methyltransferase [Cellulomonas fimi ATCC 484]
gi|332341172|gb|AEE47755.1| Methyltransferase type 11 [Cellulomonas fimi ATCC 484]
Length = 248
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 72 DSPLSGTLITIA-ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI 130
D PL L+++ N + +R+G+ V+D G G D L+ K V G +G+D+
Sbjct: 51 DVPLEAQLVSLGCGNPLAVAELREGERVLDLGSGGGIDVLLSAKRVG---PTGFAHGVDM 107
Query: 131 QSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKS 190
T +LD + AEK +E++ +V +V N
Sbjct: 108 -------TDEMLDLARANAEKAGATNVAFHKGTIEDLPLDDGSVDVVISN---------C 151
Query: 191 VITTSETTKMALEAAERILIPGGLISM 217
V+ S L R+L+PGG + +
Sbjct: 152 VVNLSPDKSAVLSEVFRVLVPGGRVGI 178
>gi|310658142|ref|YP_003935863.1| Methyltransferase [[Clostridium] sticklandii]
gi|308824920|emb|CBH20958.1| Methyltransferase [[Clostridium] sticklandii]
Length = 348
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 76 SGTLITIAANGVWKHV-VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA 134
+G I+IA N + + ++ G DAT G G TL MLK + GC++ D+
Sbjct: 48 AGMHISIAVNEILEFFQIKPGQIGFDATLGYGGHTLEMLKCL---EHQGCIFATDVDPIE 104
Query: 135 LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLG 182
+ T + L+ + ++K+ NM S +++I ++ + +LG
Sbjct: 105 SQKTKARLESLGYGED--MLKIRNMNFSEIDKISKEAGKFDFILADLG 150
>gi|118477333|ref|YP_894484.1| hypothetical protein BALH_1650 [Bacillus thuringiensis str. Al
Hakam]
gi|118416558|gb|ABK84977.1| methyltransferase [Bacillus thuringiensis str. Al Hakam]
Length = 681
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 422 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 475
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L+ A +L P
Sbjct: 476 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQTAYEVLKP 533
Query: 212 GGLI 215
GG I
Sbjct: 534 GGRI 537
>gi|428220751|ref|YP_007104921.1| ubiquinone/menaquinone biosynthesis methyltransferase
[Synechococcus sp. PCC 7502]
gi|427994091|gb|AFY72786.1| ubiquinone/menaquinone biosynthesis methyltransferase
[Synechococcus sp. PCC 7502]
Length = 253
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 80 ITIAANGVWKHVV------RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
+++ + VWK + + GDT +D CG+G +M+ + +A+++ G V+G+D
Sbjct: 43 LSLGQHRVWKKMAIAWTNPKAGDTYLDLCCGSGDVAMMLARKIANKNHTGQVFGVDFSES 102
Query: 134 AL 135
L
Sbjct: 103 QL 104
>gi|423606364|ref|ZP_17582257.1| hypothetical protein IIK_02945 [Bacillus cereus VD102]
gi|401241920|gb|EJR48298.1| hypothetical protein IIK_02945 [Bacillus cereus VD102]
Length = 676
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 417 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 470
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L+ A +L P
Sbjct: 471 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQTAYEVLKP 528
Query: 212 GGLI 215
GG I
Sbjct: 529 GGRI 532
>gi|229196119|ref|ZP_04322870.1| Methyltransferase [Bacillus cereus m1293]
gi|228587353|gb|EEK45420.1| Methyltransferase [Bacillus cereus m1293]
Length = 684
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 425 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 478
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L+ A +L P
Sbjct: 479 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQTAYEVLKP 536
Query: 212 GGLI 215
GG I
Sbjct: 537 GGRI 540
>gi|196045149|ref|ZP_03112382.1| hypothetical protein BC03BB108_1788 [Bacillus cereus 03BB108]
gi|196024151|gb|EDX62825.1| hypothetical protein BC03BB108_1788 [Bacillus cereus 03BB108]
Length = 676
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 417 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 470
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L+ A +L P
Sbjct: 471 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQTAYEVLKP 528
Query: 212 GGLI 215
GG I
Sbjct: 529 GGRI 532
>gi|334135130|ref|ZP_08508629.1| arsenite S-adenosylmethyltransferase [Paenibacillus sp. HGF7]
gi|333607334|gb|EGL18649.1| arsenite S-adenosylmethyltransferase [Paenibacillus sp. HGF7]
Length = 285
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 35/189 (18%)
Query: 45 SSCCSAASFQQKQS-CSTNNCTPLPLCKDS-----PLSGTLITIAANGV----------W 88
+SCCS + + Q+ T +C P D+ SG +T G
Sbjct: 30 TSCCSPGAPAESQAENQTESCCDTPADFDAISARLGYSGEELTAVPEGANLGLGCGNPQA 89
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
++ G+TV+D G G+D + + V +AG V G+D+ T ++ +
Sbjct: 90 MAALKPGETVLDLGSGGGFDCFLASRQVG---AAGRVIGVDM-------TPEMVTRARRN 139
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
AEKG +E + + ++V ++ N VI S + A R+
Sbjct: 140 AEKGNFSNTGFRLGEIEHLPVRDSSVDVIISNC---------VINLSPDKQQVFHEAFRV 190
Query: 209 LIPGGLISM 217
L PGG +++
Sbjct: 191 LKPGGRLAI 199
>gi|196041183|ref|ZP_03108478.1| hypothetical protein BC059799_1851 [Bacillus cereus NVH0597-99]
gi|196027891|gb|EDX66503.1| hypothetical protein BC059799_1851 [Bacillus cereus NVH0597-99]
Length = 676
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 417 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 470
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L+ A +L P
Sbjct: 471 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQTAYEVLKP 528
Query: 212 GGLI 215
GG I
Sbjct: 529 GGRI 532
>gi|401882912|gb|EJT47152.1| poly polymerase 2 ADP-ribosyltransferase 2 [Trichosporon asahii var.
asahii CBS 2479]
Length = 1221
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 19/126 (15%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ KG TV+D G G D ++ K V G YGLD+ T +LD A
Sbjct: 1016 LEKGQTVLDLGSGGGIDVILSAKRVG---PTGKAYGLDM-------TDEMLDLARRNAVT 1065
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V +E+I +V ++ N VI S L A R+L P
Sbjct: 1066 AKVDNVEFLKGHIEQIPLPDCSVDVIISNC---------VINLSPDKDATLAEAYRVLKP 1116
Query: 212 GGLISM 217
GG +++
Sbjct: 1117 GGRLAI 1122
>gi|229090887|ref|ZP_04222115.1| Methyltransferase [Bacillus cereus Rock3-42]
gi|228692496|gb|EEL46227.1| Methyltransferase [Bacillus cereus Rock3-42]
Length = 681
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + + K +
Sbjct: 422 KGDTIVDVGAGGG----VMLDMIEEETEDKRIYGIDISENVIDTLKK--KKQNEGRSWNV 475
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N+ S +E V ++ Y+ + E K L+ A +L P
Sbjct: 476 IKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGRKF--NHEVIKKGLQTAYEVLKP 533
Query: 212 GGLI 215
GG I
Sbjct: 534 GGRI 537
>gi|410678576|ref|YP_006930947.1| methyltransferase [Bacillus thuringiensis Bt407]
gi|409177706|gb|AFV22010.1| methyltransferase [Bacillus thuringiensis Bt407]
Length = 678
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + S K +
Sbjct: 418 KGDTIVDVGPGGG----VMLDMIEEETEGKDIYGIDISQNVIDSLKQ--KKQNESRSWDV 471
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N + +E V + Y+ K E K L++A L P
Sbjct: 472 IKGDALNFADTFKKESVDTIVYSSIFHELFSYIEYDGKKF--NKEVIKKGLQSAYEALKP 529
Query: 212 GGLI 215
GG I
Sbjct: 530 GGRI 533
>gi|289580874|ref|YP_003479340.1| type 11 methyltransferase [Natrialba magadii ATCC 43099]
gi|448284540|ref|ZP_21475799.1| type 11 methyltransferase [Natrialba magadii ATCC 43099]
gi|289530427|gb|ADD04778.1| Methyltransferase type 11 [Natrialba magadii ATCC 43099]
gi|445570379|gb|ELY24944.1| type 11 methyltransferase [Natrialba magadii ATCC 43099]
Length = 259
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 45/147 (30%)
Query: 86 GVWKHV----VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSL 141
GV H+ +R GD+V+D G+G D + V DE G V G+D+ E L+ +
Sbjct: 61 GVGYHIDMAGLRAGDSVLDLGSGSGTDAFVAALHVGDE---GRVVGIDMTDEQLEGARAA 117
Query: 142 LDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGY---LPGGDKS-------- 190
+ + V+F GY LP GD S
Sbjct: 118 R---------------------------DAAGMDTVSFERGYIEELPFGDDSFDVVLSNG 150
Query: 191 VITTSETTKMALEAAERILIPGGLISM 217
VI S + E ER+L P G +++
Sbjct: 151 VINLSAQKERVFEEVERVLAPNGRLAL 177
>gi|228982478|ref|ZP_04142737.1| Methyltransferase [Bacillus thuringiensis Bt407]
gi|228776661|gb|EEM24969.1| Methyltransferase [Bacillus thuringiensis Bt407]
Length = 684
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
KGDT+VD G G +ML M+ +E+ +YG+DI + S K +
Sbjct: 424 KGDTIVDVGPGGG----VMLDMIEEETEGKDIYGIDISQNVIDSLKQ--KKQNESRSWDV 477
Query: 154 VK--LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+K N + +E V + Y+ K E K L++A L P
Sbjct: 478 IKGDALNFADTFKKESVDTIVYSSIFHELFSYIEYDGKKF--NKEVIKKGLQSAYEALKP 535
Query: 212 GGLI 215
GG I
Sbjct: 536 GGRI 539
>gi|448302379|ref|ZP_21492361.1| methyltransferase type 11 [Natronorubrum tibetense GA33]
gi|445581608|gb|ELY35960.1| methyltransferase type 11 [Natronorubrum tibetense GA33]
Length = 226
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144
V GDTV+D CG+GY + + D + AG VYGLD E + +S D
Sbjct: 36 VESGDTVLDLGCGSGY----AGRALRDTNDAGRVYGLDGSPEMAHNAASYTDD 84
>gi|406700473|gb|EKD03641.1| poly polymerase 2 ADP-ribosyltransferase 2 [Trichosporon asahii var.
asahii CBS 8904]
Length = 1121
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 19/126 (15%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+ KG TV+D G G D ++ K V G YGLD+ T +LD A
Sbjct: 916 LEKGQTVLDLGSGGGIDVILSAKRVG---PTGKAYGLDM-------TDEMLDLARRNAVT 965
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
V +E+I +V ++ N VI S L A R+L P
Sbjct: 966 AKVDNVEFLKGHIEQIPLPDCSVDVIISNC---------VINLSPDKDATLAEAYRVLKP 1016
Query: 212 GGLISM 217
GG +++
Sbjct: 1017 GGRLAI 1022
>gi|341582215|ref|YP_004762707.1| putative methyltransferase [Thermococcus sp. 4557]
gi|340809873|gb|AEK73030.1| putative methyltransferase [Thermococcus sp. 4557]
Length = 196
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 27/137 (19%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA--LKSTSSLLDKTTSKA 149
VRKGDT +D G G L+M + A V G+DI A L ++LL+ +
Sbjct: 31 VRKGDTALDVGTGTGLIALLMAR------KARSVLGVDINPLAVELAGENALLNGIKN-V 83
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTS--------ETTKMA 201
E + LF + + ++ FN YLPG + I + E
Sbjct: 84 EFRVSDLFERVEGKFD----------VITFNAPYLPGEPEEPIDLALVGGERGREVLDRF 133
Query: 202 LEAAERILIPGGLISMV 218
++ R L PGG + +V
Sbjct: 134 IQEVPRYLKPGGTVQIV 150
>gi|408381703|ref|ZP_11179251.1| type 11 methyltransferase [Methanobacterium formicicum DSM 3637]
gi|407815634|gb|EKF86204.1| type 11 methyltransferase [Methanobacterium formicicum DSM 3637]
Length = 557
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++KG+TV+D G G D + V D AG V G+D+ E +K+ T AE
Sbjct: 73 IKKGETVLDLGSGGGIDVFLAANKVGD---AGKVIGVDMTQEMVKT-------ATQNAEA 122
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
G +E + + ++ ++ N VI + +A + R+L
Sbjct: 123 GGYDNVEFKLGEIENLPIEDNSIDVIISNC---------VINLTPNKSVAFKEVFRVLKD 173
Query: 212 GG--LISMVVYVGH 223
GG LIS +V G
Sbjct: 174 GGRILISDIVTEGE 187
>gi|323701394|ref|ZP_08113068.1| Methyltransferase type 11 [Desulfotomaculum nigrificans DSM 574]
gi|323533653|gb|EGB23518.1| Methyltransferase type 11 [Desulfotomaculum nigrificans DSM 574]
Length = 192
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 19/129 (14%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++G+ V+D CG G+ TL ++V +AG VYGLDIQ + L++ + ++
Sbjct: 33 LQEGERVLDLGCGIGFLTLPAARVVG---AAGFVYGLDIQEDM------LVEALSRSRKE 83
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
GL S + ++ V L A ++ Y+ G V + + L+ R+L P
Sbjct: 84 GL--------SNIAWVLTPPDKVSLPAASVDYVTMG--LVAHEAPDLGVMLKECHRVLKP 133
Query: 212 GGLISMVVY 220
GG + ++ +
Sbjct: 134 GGRVGIIEW 142
>gi|311748000|ref|ZP_07721785.1| methyltransferase [Algoriphagus sp. PR1]
gi|126574980|gb|EAZ79338.1| methyltransferase [Algoriphagus sp. PR1]
Length = 272
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 27/133 (20%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V+KG++++D G G L+ KM S G + D+ E +K ++L T+SK+
Sbjct: 42 VKKGESILDIAAGTG---LITFKMAEKVGSKGNILATDLSDEMVKIGNNL---TSSKS-- 93
Query: 152 GLVKLFNMCHSRM--EEIVPKSTAVRLVAFNLG--YLPGGDKSVITTSETTKMALEAAER 207
L N+ RM E + S LV LG Y P DK AL R
Sbjct: 94 ----LSNVEFRRMDAENLSIDSGIFDLVTCALGIMYFPDPDK-----------ALSEMYR 138
Query: 208 ILIPGGLISMVVY 220
+L PGG ++ ++
Sbjct: 139 VLKPGGRCAVAIW 151
>gi|334341703|ref|YP_004546683.1| type 11 methyltransferase [Desulfotomaculum ruminis DSM 2154]
gi|334093057|gb|AEG61397.1| Methyltransferase type 11 [Desulfotomaculum ruminis DSM 2154]
Length = 191
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 21/128 (16%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ GD V D CG GY T+ KMV +E G V+ LDI E L K S E
Sbjct: 33 LQPGDVVADIGCGIGYFTIPAAKMVGEE---GKVFALDISEEMLMEV-----KNRSAVEG 84
Query: 152 -GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI 210
G ++L + ++ + ST +AF L +P K L RIL
Sbjct: 85 IGNLELLKVEENQF-SLASDSTTFVFLAFVLHEVP-----------ELKAYLLQVIRILK 132
Query: 211 PGGLISMV 218
GG I+++
Sbjct: 133 SGGRIAII 140
>gi|392997084|gb|AFM97235.1| arsenite S-adenosylmethyltransferase, partial [uncultured
bacterium]
Length = 115
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 19/122 (15%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++G+TV+D G G+D + +V D+ G V G+D+ E +LDK S A
Sbjct: 13 LKRGETVLDLGSGAGFDCFLAANVVGDD---GRVIGVDMTPE-------MLDKARSNARS 62
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
G +E + ++ ++ N VI + + A R+L P
Sbjct: 63 GGYTNVEFRLGELEHLPAADNSIDVIVSN---------CVINLTPDKGAVFKEAFRVLKP 113
Query: 212 GG 213
GG
Sbjct: 114 GG 115
>gi|407003268|gb|EKE19867.1| hypothetical protein ACD_8C00094G0011 [uncultured bacterium]
Length = 184
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 38/140 (27%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTS------SLLDKT 145
+ KG VVD CG GY ++ + + V ++ G V+ LDI +AL++ +++ T
Sbjct: 23 IEKGSVVVDFGCGPGYFSIPLAQAVGED---GKVFSLDILPQALEAVEGKAKNLGIVNIT 79
Query: 146 TSKA---EKGLVKLFNMCHS--RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKM 200
T +A +KG KL +M S M++I+ +++ DK+VI
Sbjct: 80 TKRANLEKKGGSKLESMSASWVVMKDILFQNS---------------DKNVI-------- 116
Query: 201 ALEAAERILIPGGLISMVVY 220
+E A RIL GG I +V +
Sbjct: 117 -IEEAHRILKDGGKILIVEW 135
>gi|333923124|ref|YP_004496704.1| type 11 methyltransferase [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333748685|gb|AEF93792.1| Methyltransferase type 11 [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 192
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 19/129 (14%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++G+ V+D CG G+ TL ++V +AG VYGLDIQ + L++ + ++
Sbjct: 33 LQEGERVLDLGCGIGFLTLPAARVVG---AAGFVYGLDIQEDM------LVEALSRSRKE 83
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
GL S + ++ V L A ++ Y+ G V + + L+ R+L P
Sbjct: 84 GL--------SNIAWVLTPPDKVSLPAASVDYVTMG--LVAHEAPDLGVMLKECHRVLKP 133
Query: 212 GGLISMVVY 220
GG + ++ +
Sbjct: 134 GGRVGIIEW 142
>gi|188587304|ref|YP_001918849.1| type 11 methyltransferase [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179351991|gb|ACB86261.1| Methyltransferase type 11 [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 199
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
++KGD V D CG+G+ T+ ++V ++ G V+ LDI SE L++
Sbjct: 33 LKKGDIVADIGCGSGFFTIPAGELVGEQ---GKVFALDISSEMLQTVED 78
>gi|383620007|ref|ZP_09946413.1| type 11 methyltransferase [Halobiforma lacisalsi AJ5]
gi|448696383|ref|ZP_21697857.1| type 11 methyltransferase [Halobiforma lacisalsi AJ5]
gi|445783589|gb|EMA34417.1| type 11 methyltransferase [Halobiforma lacisalsi AJ5]
Length = 226
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 71 KDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI 130
+D + A + + + V GDT++D CG+GY + + D + AG VYGLD
Sbjct: 15 RDKGMEDRHWNTAKHALARMPVEPGDTILDLGCGSGY----AGRALRDNAEAGRVYGLDG 70
Query: 131 QSEALKSTSSLLDKT 145
E ++ + D +
Sbjct: 71 SPEMARNATEYTDDS 85
>gi|56419127|ref|YP_146445.1| arsenite S-adenosylmethyltransferase [Geobacillus kaustophilus
HTA426]
gi|375007444|ref|YP_004981077.1| type 11 methyltransferase [Geobacillus thermoleovorans CCB_US3_UF5]
gi|56378969|dbj|BAD74877.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|359286293|gb|AEV17977.1| Methyltransferase type 11 [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 264
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 54/135 (40%), Gaps = 37/135 (27%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
GD V+D CG G+D + + V + G V G+D+ T ++ K + A KG
Sbjct: 80 GDVVLDLGCGAGFDCFLAARQVGE---TGRVIGVDM-------TPEMISKARNNAAKG-- 127
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKS--------VITTSETTKMALEAAE 206
F R+ EI YLP D S VI S + A
Sbjct: 128 -GFTNTEFRLGEIE--------------YLPVADGSVDVIISNCVINLSPDKPQVFKEAY 172
Query: 207 RILIPGG--LISMVV 219
R+L PGG +IS VV
Sbjct: 173 RVLKPGGRLVISDVV 187
>gi|116748631|ref|YP_845318.1| type 11 methyltransferase [Syntrophobacter fumaroxidans MPOB]
gi|116697695|gb|ABK16883.1| Methyltransferase type 11 [Syntrophobacter fumaroxidans MPOB]
Length = 209
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+RKG+ ++D CG G D ++ M AG V GLD+ E L+ L +T+ K
Sbjct: 81 IRKGERILDIGCGAGVDAIVAGVMTG---PAGAVVGLDLTPEMLERARRNLSRTSLK 134
>gi|392997108|gb|AFM97247.1| arsenite S-adenosylmethyltransferase, partial [uncultured
bacterium]
Length = 116
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 19/122 (15%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++KG+TV+D G G+D + +V D+ G V G+D+ E ++DK S A
Sbjct: 13 LKKGETVLDLGSGAGFDCFLAANVVGDD---GRVIGVDMTPE-------MIDKARSNARS 62
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
G +E + ++ ++ N VI + + A R+L P
Sbjct: 63 GGYTNVEFRLGELEHLPAADNSIDVIISN---------CVINLTPDKGAVFKEAFRVLKP 113
Query: 212 GG 213
GG
Sbjct: 114 GG 115
>gi|392997082|gb|AFM97234.1| arsenite S-adenosylmethyltransferase, partial [uncultured
bacterium]
gi|392997086|gb|AFM97236.1| arsenite S-adenosylmethyltransferase, partial [uncultured
bacterium]
gi|392997090|gb|AFM97238.1| arsenite S-adenosylmethyltransferase, partial [uncultured
bacterium]
Length = 116
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 19/122 (15%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++G+ V+D G G D L+ K V G YGLD+ T +LD A +
Sbjct: 13 LKEGEVVLDLGSGGGIDVLLSAKRVG---PTGKAYGLDM-------TDEMLDLARKNAAE 62
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
+EEI S V ++ N VI S LE A R+L P
Sbjct: 63 VGATNVEFLRGHIEEIPLPSNTVDVIISN---------CVINLSADKGKVLEEAFRVLKP 113
Query: 212 GG 213
GG
Sbjct: 114 GG 115
>gi|412987629|emb|CCO20464.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bathycoccus
prasinos]
Length = 324
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 79 LITIAANGVWKHVV------RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQS 132
++++ + WK RKGDTV+D CG+G + V D+ G V+GLD
Sbjct: 109 VLSLGLHRAWKRATVKWSGARKGDTVLDVCCGSGDIAQRLSDRVGDK---GTVFGLDFAE 165
Query: 133 EALKSTSSLLDKTT 146
L+ + +++ T
Sbjct: 166 NQLRRAAEKMEEKT 179
>gi|312143008|ref|YP_003994454.1| type 11 methyltransferase [Halanaerobium hydrogeniformans]
gi|311903659|gb|ADQ14100.1| Methyltransferase type 11 [Halanaerobium hydrogeniformans]
Length = 263
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+++G+TV+D G G+D + + V ++ G V G+D+ T +++K A+K
Sbjct: 78 LKEGETVLDLGSGAGFDAFLASREVGEK---GKVIGIDM-------TEEMVEKARENAQK 127
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
VK +E++ ++ ++ N VI S K A+R+L
Sbjct: 128 NGVKNVEFILGEIEDLPLADESIDVIISNC---------VINLSTDKKQVFTEAKRVLKK 178
Query: 212 GGLISM 217
GG +++
Sbjct: 179 GGRLAI 184
>gi|406894323|gb|EKD39164.1| hypothetical protein ACD_75C00489G0002 [uncultured bacterium]
Length = 272
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 41/138 (29%)
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
G+TV+D G G+D + + V D+ G V G+D+ TS+++DK AEK V
Sbjct: 87 GETVLDLGSGAGFDCFLAARAVGDK---GHVIGVDM-------TSAMIDKARRNAEK--V 134
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLG---YLPGGD--------KSVITTSETTKMALE 203
L N V F LG +LP D VI S +
Sbjct: 135 GLTN------------------VDFRLGELEHLPVADGIVDAIISNCVINLSPEKEQVFR 176
Query: 204 AAERILIPGGLISMVVYV 221
A R+L PGG +++ V
Sbjct: 177 EAFRVLKPGGRLAVADVV 194
>gi|448712813|ref|ZP_21701842.1| type 11 methyltransferase [Halobiforma nitratireducens JCM 10879]
gi|445790239|gb|EMA40908.1| type 11 methyltransferase [Halobiforma nitratireducens JCM 10879]
Length = 226
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 48/130 (36%), Gaps = 39/130 (30%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V GDT++D CG+GY + + D + AG VYGLD E ++ + D
Sbjct: 36 VEPGDTILDLGCGSGY----AGRALRDNADAGRVYGLDGSPEMARNATEYTDD------- 84
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSV--------ITTSETTKMALE 203
P+ V V + G LP D S+ + LE
Sbjct: 85 -----------------PQ---VGYVVGDFGSLPFADDSIDHVWSMEAFYYAADPHTTLE 124
Query: 204 AAERILIPGG 213
R+L PGG
Sbjct: 125 EIARVLRPGG 134
>gi|336252818|ref|YP_004595925.1| type 11 methyltransferase [Halopiger xanaduensis SH-6]
gi|335336807|gb|AEH36046.1| Methyltransferase type 11 [Halopiger xanaduensis SH-6]
Length = 226
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144
V GDTV+D CG+GY + + D AG VYGLD E ++ + D
Sbjct: 36 VEPGDTVLDLGCGSGY----AGRALRDNKDAGRVYGLDGSPEMARNAAGYTDD 84
>gi|297618327|ref|YP_003703486.1| type 11 methyltransferase [Syntrophothermus lipocalidus DSM 12680]
gi|297146164|gb|ADI02921.1| Methyltransferase type 11 [Syntrophothermus lipocalidus DSM 12680]
Length = 269
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 68/179 (37%), Gaps = 39/179 (21%)
Query: 45 SSCCSAASFQQKQSCSTNNCTP---------LPLCKDSPLSGTLITIA-ANGVWKHVVRK 94
+SCCS S C CTP L +D P ++ AN + +++
Sbjct: 26 ASCCSGGS------C----CTPIANAIVLYDLDNLEDLPREAVNFSLGCANPLLLADLKE 75
Query: 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV 154
G+ V+D G G D L K V +G VYGLD+ T +LD E+ V
Sbjct: 76 GEVVLDLGSGGGLDVLAASKYVG---PSGTVYGLDM-------TDEMLDLANRNKEQMGV 125
Query: 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
+E+I + +V N VI S + AL A R+L P G
Sbjct: 126 TNVEFLKGFIEDIPLPDESCDVVMSN---------CVINLSHDKEKALAEAYRVLKPQG 175
>gi|295107644|emb|CBL05187.1| Methylase involved in ubiquinone/menaquinone biosynthesis
[Gordonibacter pamelaeae 7-10-1-b]
Length = 365
Score = 37.0 bits (84), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 24/126 (19%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
+G TVVD CG+G DT + ++V SAG V G++ +E L LDK + G
Sbjct: 74 EGCTVVDLCCGSGRDTYLAAQLVG---SAGKVVGVEPNAERLAIAQKYLDKEMKQFGYGQ 130
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA------ER 207
P V V +L +L G V+ ++ T ++ + A +R
Sbjct: 131 ---------------PNVELVHGVPEDLSFLADGTADVVISNCTFNLSPDKAAYVAEVKR 175
Query: 208 ILIPGG 213
+L P G
Sbjct: 176 VLKPQG 181
>gi|344942229|ref|ZP_08781517.1| Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
[Methylobacter tundripaludum SV96]
gi|344263421|gb|EGW23692.1| Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
[Methylobacter tundripaludum SV96]
Length = 248
Score = 37.0 bits (84), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 25/152 (16%)
Query: 79 LITIAANGVWKHV------VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQS 132
L+++ + +WK V VRKG+ V+D G G T + K V E G + DI S
Sbjct: 39 LMSLGIHRIWKRVAVQLSNVRKGEQVLDLAGGTGDLTTLFEKRVGPE---GQIVLADINS 95
Query: 133 EALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVI 192
E L++ L ++GLV E + + V G DK
Sbjct: 96 EMLRTGRDRL------IDRGLVGNIRYAQVNAECLPFEDNTFDCVCIAFGLRNVTDKDA- 148
Query: 193 TTSETTKMALEAAERILIPGGLISMVVYVGHP 224
AL + R+L PGG + +V+ HP
Sbjct: 149 --------ALRSMHRVLKPGGRV-IVLEFSHP 171
>gi|345868847|ref|ZP_08820816.1| protein-L-isoaspartate O-methyltransferase [Bizionia argentinensis
JUB59]
gi|344046747|gb|EGV42402.1| protein-L-isoaspartate O-methyltransferase [Bizionia argentinensis
JUB59]
Length = 213
Score = 37.0 bits (84), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++KGD V++ G+GY T ++ ++ A VY ++ Q E K TS L K +A+K
Sbjct: 78 IQKGDKVLEIGTGSGYQTAVLCELGAQ------VYSIERQHELFKKTSKFLPKLGYRAKK 131
>gi|333989646|ref|YP_004522260.1| type 11 methyltransferase [Mycobacterium sp. JDM601]
gi|333485614|gb|AEF35006.1| methyltransferase type 11 [Mycobacterium sp. JDM601]
Length = 259
Score = 37.0 bits (84), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 19/126 (15%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
+R G+ V+D G G D L+ + V E G YG+D+ E L + +KA+
Sbjct: 85 LRAGERVLDLGSGGGIDVLLSARRVGPE---GFAYGVDMTDEMLALAEA------NKAKS 135
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211
GL + +E+I AV +V N VI S L R+L+P
Sbjct: 136 GLANV-EFRKGTIEDIPLPDAAVDVVISNC---------VINLSVDKPRVLAEMFRVLVP 185
Query: 212 GGLISM 217
GG I +
Sbjct: 186 GGRIGI 191
>gi|325188997|emb|CCA23526.1| proteinLisoaspartate(Daspartate) Omethyltransferase putative
[Albugo laibachii Nc14]
Length = 327
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143
++ G + +D CG+GY T+ M K+V + GCV G+DI + + +S + +
Sbjct: 126 LKPGASALDLGCGSGYLTICMSKLVG---ATGCVIGIDIAPDLTQKSSEIFN 174
>gi|448364077|ref|ZP_21552671.1| type 11 methyltransferase [Natrialba asiatica DSM 12278]
gi|445644965|gb|ELY97972.1| type 11 methyltransferase [Natrialba asiatica DSM 12278]
Length = 226
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144
V GDTV+D CG+GY + + D AG +YGLD E + +S D
Sbjct: 36 VEPGDTVLDLGCGSGY----AGRALRDTKGAGRIYGLDGSPEMAHNAASYTDD 84
>gi|357485787|ref|XP_003613181.1| Menaquinone biosynthesis methyltransferase ubiE [Medicago
truncatula]
gi|355514516|gb|AES96139.1| Menaquinone biosynthesis methyltransferase ubiE [Medicago
truncatula]
Length = 270
Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 79 LITIAANGVWKHVV------RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQS 132
L+++ + +WK + +KGD V+D CG+G + ++ VA S G V GLD
Sbjct: 63 LLSLGQHRIWKRMAVSWTEAKKGDRVLDVCCGSGDLSFLLSNKVA---SNGKVIGLDFSK 119
Query: 133 EALKSTSS 140
E L SS
Sbjct: 120 EQLMVASS 127
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,773,572,616
Number of Sequences: 23463169
Number of extensions: 142181640
Number of successful extensions: 392758
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 390402
Number of HSP's gapped (non-prelim): 1045
length of query: 267
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 127
effective length of database: 9,074,351,707
effective search space: 1152442666789
effective search space used: 1152442666789
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)