BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041272
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
Length = 197
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAXXXXXXXXXXXXXX 148
K V++GDTVVDATCGNG DT + +V + G V+G DIQ +A
Sbjct: 17 KMFVKEGDTVVDATCGNGNDTAFLASLVGEN---GRVFGFDIQDKAIANTTKKLTDLNLI 73
Query: 149 AEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208
L+K H M++ + V+ V FNLGYLP GD S+ T ETT AL A +
Sbjct: 74 DRVTLIK---DGHQNMDKYI--DCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMEL 128
Query: 209 LIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAP 259
L+ GG+I++V+Y G G EE E V F + + +I + +N+ P
Sbjct: 129 LVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCP 179
>pdb|3LBY|A Chain A, Crystal Structure Of Smu.1697c, A Putative
Methyltransferase From Streptococcus Mutans In Complex
With Sah
pdb|3LBY|B Chain B, Crystal Structure Of Smu.1697c, A Putative
Methyltransferase From Streptococcus Mutans In Complex
With Sah
Length = 181
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 12/178 (6%)
Query: 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAXXXXXXXXXXXXXXA 149
V+ K +DAT GNG DT+ + + A VY D+Q +A
Sbjct: 15 QVLDKNSIAIDATMGNGNDTVFLSHL------AKKVYAFDVQEQALIKTREKLEQLNIKN 68
Query: 150 EKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
V+L H + + V + +R FNLGYLP DKSVIT TT A++ L
Sbjct: 69 ----VQLILDGHQTINKYV--TEPIRAAIFNLGYLPSADKSVITQPATTLTAIKKILERL 122
Query: 210 IPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRPLAPVLVFLFKR 267
GG ++++VY GH GG +E +AV F + L + +Q LN+ P + + ++
Sbjct: 123 EIGGRLAIMVYYGHEGGDKEKDAVLNFVKELDQQHFTVMLYQPLNQINTPPFLVMIEK 180
>pdb|3MTI|A Chain A, The Crystal Structure Of A Rrna Methylase From
Streptococcus Thermophilus To 1.95a
pdb|3MTI|B Chain B, The Crystal Structure Of A Rrna Methylase From
Streptococcus Thermophilus To 1.95a
Length = 185
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 83/175 (47%), Gaps = 23/175 (13%)
Query: 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAXXXXXXXXXXXXXXAEKGL--VK 155
VVDAT GNG DT + + + VY D+Q +A ++ G+ +
Sbjct: 26 VVDATXGNGNDTAFLAGL------SKKVYAFDVQEQALGKTSQRL------SDLGIENTE 73
Query: 156 LFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP---G 212
L H ++ V + +R FNLGYLP DKSVIT TT LEA E+IL G
Sbjct: 74 LILDGHENLDHYVREP--IRAAIFNLGYLPSADKSVITKPHTT---LEAIEKILDRLEVG 128
Query: 213 GLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNR-PLAPVLVFLFK 266
G +++ +Y GH GG E +AV + L + +Q LN+ P LV L K
Sbjct: 129 GRLAIXIYYGHDGGDXEKDAVLEYVIGLDQRVFTAXLYQPLNQINTPPFLVXLEK 183
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 19/96 (19%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAXXXXXXXXXXXXXXAEKGL 153
KGD + D D L MV E AG Y + +E +K L
Sbjct: 226 KGDQIRDWLYVE--DHARALHMVVTEGKAGETYNIGGHNE----------------KKNL 267
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDK 189
+F +C ++EIVPK+T+ R + PG D+
Sbjct: 268 DVVFTIC-DLLDEIVPKATSYREQITYVADRPGHDR 302
>pdb|1JSY|A Chain A, Crystal Structure Of Bovine Arrestin-2
pdb|1ZSH|A Chain A, Crystal Structure Of Bovine Arrestin-2 In Complex With
Inositol Hexakisphosphate (Ip6)
pdb|2WTR|A Chain A, Full Length Arrestin2
Length = 418
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
VK F C +EE + K +VRLV + Y P T+ETT+ L + + + +
Sbjct: 146 VKAF--CAENLEEKIHKRNSVRLVIRKVQYAPER-PGPQPTAETTRQFLMSDKPLHLEAS 202
Query: 214 LISMVVYVGHP 224
L + Y G P
Sbjct: 203 LDKEIYYHGEP 213
>pdb|2WTR|B Chain B, Full Length Arrestin2
Length = 418
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
VK F C +EE + K +VRLV + Y P T+ETT+ L + + + +
Sbjct: 146 VKAF--CAENLEEKIHKRNSVRLVIRKVQYAPER-PGPQPTAETTRQFLMSDKPLHLEAS 202
Query: 214 LISMVVYVGHP 224
L + Y G P
Sbjct: 203 LDKEIYYHGEP 213
>pdb|3GC3|A Chain A, Crystal Structure Of Arrestin2s And Clathrin
Length = 385
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
VK F C +EE + K +VRLV + Y P T+ETT+ L + + + +
Sbjct: 146 VKAF--CAENLEEKIHKRNSVRLVIRKVQYAPER-PGPQPTAETTRQFLMSDKPLHLEAS 202
Query: 214 LISMVVYVGHP 224
L + Y G P
Sbjct: 203 LDKEIYYHGEP 213
>pdb|1G4M|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4M|B Chain B, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4R|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|3GD1|C Chain C, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
pdb|3GD1|E Chain E, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
Length = 393
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
VK F C +EE + K +VRLV + Y P T+ETT+ L + + + +
Sbjct: 146 VKAF--CAENLEEKIHKRNSVRLVIRKVQYAPER-PGPQPTAETTRQFLMSDKPLHLEAS 202
Query: 214 LISMVVYVGHP 224
L + Y G P
Sbjct: 203 LDKEIYYHGEP 213
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
+++G TV+D G G+ + KMV ++ G VY +D+Q E
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEK---GKVYAIDVQEE 73
>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI2|A Chain A, Structure And Mechanism Of Mrna Cap (guanine N-7)
Methyltransferase
pdb|1RI3|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI4|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI5|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1Z3C|A Chain A, Encephalitozooan Cuniculi Mrna Cap (Guanine-N7)
Methyltransferasein Complexed With Azoadomet
pdb|2HV9|A Chain A, Encephalitozoon Cuniculi Mrna Cap (Guanine-N7)
Methyltransferase In Complex With Sinefungin
Length = 298
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 15/127 (11%)
Query: 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAXXXXXXXXXXXXXXAEKG 152
++GD+V+D CG G D L + + G YG+DI +E K
Sbjct: 63 KRGDSVLDLGCGKGGDLLKY-----ERAGIGEYYGVDI-AEVSINDARVRARNMKRRFKV 116
Query: 153 LVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212
+ + M+ + K V F+ Y +TSE+ +A R L PG
Sbjct: 117 FFRAQDSYGRHMD--LGKEFDVISSQFSFHY-------AFSTSESLDIAQRNIARHLRPG 167
Query: 213 GLISMVV 219
G M V
Sbjct: 168 GYFIMTV 174
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDD 244
A +++ PGG+I+ + G GR + A++ F+R++S+ D
Sbjct: 303 ARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGD 343
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDD 244
A +++ PGG+I+ + G GR + A++ F+R++S+ D
Sbjct: 303 ARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGD 343
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDD 244
A +++ PGG+I+ + G GR + A++ F+R++S+ D
Sbjct: 303 ARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGD 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,362,064
Number of Sequences: 62578
Number of extensions: 211522
Number of successful extensions: 589
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 21
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)