BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041272
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O34614|YTQB_BACSU Putative rRNA methylase YtqB OS=Bacillus subtilis (strain 168)
GN=ytqB PE=3 SV=1
Length = 194
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 99/201 (49%), Gaps = 17/201 (8%)
Query: 69 LCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL 128
L K P S L+ +AA +GD VVDAT GNG+DT + ++V + G VY
Sbjct: 3 LKKILPYSKELLKMAAG--------EGDIVVDATMGNGHDTQFLAELVGEN---GHVYAF 51
Query: 129 DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA--FNLGYLPG 186
DIQ A+ +T L + LF+ H ++ E +P T ++ A FNLGYLPG
Sbjct: 52 DIQESAVANTKERL----GDMYQARTTLFHKSHDKIAESLPPETHGKVAAAVFNLGYLPG 107
Query: 187 GDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246
GDKS+ T +T A+E I+ GLI +VVY GHP G+ E V F R L
Sbjct: 108 GDKSITTNGSSTIKAIEQLLSIMKDEGLIVLVVYHGHPEGKAEKNDVLEFCRDLDQQTAR 167
Query: 247 CCKFQMLNRPLAPVLVFLFKR 267
+ +N+ P + ++
Sbjct: 168 VLTYGFINQQNDPPFIVAIEK 188
>sp|A6TUM7|RSMH2_ALKMQ Ribosomal RNA small subunit methyltransferase H 2 OS=Alkaliphilus
metalliredigens (strain QYMF) GN=rsmH2 PE=3 SV=1
Length = 349
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 69 LCKDSPLSGTLITIAANGVWKHV-VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYG 127
+ K S +G +I N + + + + G T +DAT G G TL MLK + +S G +Y
Sbjct: 42 IQKGSTPAGMHRSICVNEILEFLKITPGQTGLDATLGYGGHTLEMLKRL---NSKGHLYA 98
Query: 128 LDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLG 182
+D+ S L T L+ +E ++ + M S +++I +S + V +LG
Sbjct: 99 IDVDSIELPRTQERLEGLGYGSE--ILTIKQMNFSNIDQIALESGPLNFVLADLG 151
>sp|A5W8E5|CMOB_PSEP1 tRNA (mo5U34)-methyltransferase OS=Pseudomonas putida (strain F1 /
ATCC 700007) GN=cmoB PE=3 SV=1
Length = 318
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 14/106 (13%)
Query: 22 RNTLLPFPAAALSKAN-VNVLRFSSSCCSAASFQQKQSCSTNNCTPLPLCKDSP--LSGT 78
R L PA S+ + VN LR C A Q +Q+ L + P L G
Sbjct: 42 RGALEALPALQPSEVDLVNGLRLDCDCDDATRAQMRQALMG-----LSPWRKGPFDLFGV 96
Query: 79 LITIAANGVWK------HVVRKGDTVVDATCGNGYDTLMMLKMVAD 118
+ WK H+ KG V+D CGNGY ML AD
Sbjct: 97 HVDTEWRSDWKWSRVGPHLDLKGKRVLDVGCGNGYYQWRMLGAGAD 142
>sp|B0KV20|CMOB_PSEPG tRNA (mo5U34)-methyltransferase OS=Pseudomonas putida (strain GB-1)
GN=cmoB PE=3 SV=1
Length = 318
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 14/106 (13%)
Query: 22 RNTLLPFPAAALSKAN-VNVLRFSSSCCSAASFQQKQSCSTNNCTPLPLCKDSP--LSGT 78
R L P S+ + VN LR C A Q +Q+ L + P L G
Sbjct: 42 RGALQALPTLQPSEIDLVNGLRLDCDCDDATRAQMRQALMG-----LSPWRKGPFDLFGV 96
Query: 79 LITIAANGVWK------HVVRKGDTVVDATCGNGYDTLMMLKMVAD 118
+ + WK H+ KG V+D CGNGY ML AD
Sbjct: 97 HVDTEWHSDWKWSRVSPHLNLKGKRVLDVGCGNGYYQWRMLGAGAD 142
>sp|A2YP56|ANM3_ORYSI Probable protein arginine N-methyltransferase 3 OS=Oryza sativa
subsp. indica GN=PRMT3 PE=2 SV=1
Length = 620
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSA--GCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
G TV+D CG G +L K A A G + + +E KS L D+ +K
Sbjct: 291 NGATVLDVGCGTGILSLFAAKAGASRVIAVDGSAKMVSVATEVTKSNGFLYDENMEMQQK 350
Query: 152 GLVKLFNMCHSRMEEI-----VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
++ + H++ EE+ VP + LV+ +GY + L A +
Sbjct: 351 RDTQVITVVHTKAEELNHKIQVPSNKFDVLVSEWMGY-------CLLYESMLSSVLYARD 403
Query: 207 RILIPGGLI 215
L PGG I
Sbjct: 404 HFLKPGGAI 412
>sp|A3BMN9|ANM3_ORYSJ Probable protein arginine N-methyltransferase 3 OS=Oryza sativa
subsp. japonica GN=PRMT3 PE=2 SV=1
Length = 620
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSA--GCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
G TV+D CG G +L K A A G + + +E KS L D+ +K
Sbjct: 291 NGATVLDVGCGTGILSLFAAKAGASRVIAVDGSAKMVSVATEVAKSNGFLYDENMEMQQK 350
Query: 152 GLVKLFNMCHSRMEEI-----VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
++ + H++ EE+ VP + LV+ +GY + L A +
Sbjct: 351 RDTQVITVVHTKAEELNHKIQVPSNKFDVLVSEWMGY-------CLLYESMLSSVLYARD 403
Query: 207 RILIPGGLI 215
L PGG I
Sbjct: 404 HFLKPGGAI 412
>sp|O66128|UBIE_MICLU Demethylmenaquinone methyltransferase OS=Micrococcus luteus GN=ubiE
PE=3 SV=1
Length = 246
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 26/135 (19%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V+KG +D CG G T+ M + V G V GLD L + ++ +
Sbjct: 56 VKKGSKALDVCCGTGDWTIQMAQAVGKN---GHVIGLDFSENML---------SVAQGKT 103
Query: 152 GLVKLFNMCHSRMEEIVPKSTAVRL--VAFNLGYLPGGDKSVITTSETTKMALEAAERIL 209
++ + H E+ + + F L LP K LE R+L
Sbjct: 104 NHIQNIELIHGNAMELPFEDNIFDYTTIGFGLRNLP-----------DYKKGLEEMYRVL 152
Query: 210 IPGGLISMVVYVGHP 224
PGG+I +V+ HP
Sbjct: 153 KPGGMI-VVLETSHP 166
>sp|Q13U36|PRMA_BURXL Ribosomal protein L11 methyltransferase OS=Burkholderia xenovorans
(strain LB400) GN=prmA PE=3 SV=1
Length = 300
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ G +V+D CG+G +L ++A + A VYG+DI +A++S ++ ++
Sbjct: 160 EQSVQPGQSVLDYGCGSG-----ILAILAKKCGADPVYGIDIDPQAVESARHNSERNRAE 214
Query: 149 AEKGL 153
GL
Sbjct: 215 VTYGL 219
>sp|Q3ED65|MENG_ARATH 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic
OS=Arabidopsis thaliana GN=MENG PE=1 SV=2
Length = 261
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 79 LITIAANGVWKHVV------RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQS 132
L+++ + +WK++ +KGD V+D CG+G ++ + V S G V GLD S
Sbjct: 52 LLSLGQHRIWKNMAVSWSGAKKGDYVLDLCCGSGDLAFLLSEKVG---STGKVMGLDFSS 108
Query: 133 EAL 135
E L
Sbjct: 109 EQL 111
>sp|C3N8G6|CBIT_SULIY Probable cobalt-precorrin-6Y C(15)-methyltransferase
[decarboxylating] OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=cbiT PE=3 SV=1
Length = 199
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 71 KDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI 130
+D + T I A + K +RKGD ++D CG G T+ +V S G VYG+D
Sbjct: 17 RDEEIPMTKEEIRALALSKLRIRKGDMILDIGCGTGSVTVEASLLVG---STGKVYGVDK 73
Query: 131 QSEALKST 138
+ +A+ T
Sbjct: 74 EEKAINLT 81
>sp|C3MTW8|CBIT_SULIM Probable cobalt-precorrin-6Y C(15)-methyltransferase
[decarboxylating] OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=cbiT PE=3 SV=1
Length = 199
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 71 KDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI 130
+D + T I A + K +RKGD ++D CG G T+ +V S G VYG+D
Sbjct: 17 RDEEIPMTKEEIRALALSKLRIRKGDMILDIGCGTGSVTVEASLLVG---STGKVYGVDK 73
Query: 131 QSEALKST 138
+ +A+ T
Sbjct: 74 EEKAINLT 81
>sp|C3MJI5|CBIT_SULIL Probable cobalt-precorrin-6Y C(15)-methyltransferase
[decarboxylating] OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=cbiT PE=3 SV=1
Length = 199
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 71 KDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI 130
+D + T I A + K +RKGD ++D CG G T+ +V S G VYG+D
Sbjct: 17 RDEEIPMTKEEIRALALSKLRIRKGDMILDIGCGTGSVTVEASLLVG---STGKVYGVDK 73
Query: 131 QSEALKST 138
+ +A+ T
Sbjct: 74 EEKAINLT 81
>sp|C4KJM8|CBIT_SULIK Probable cobalt-precorrin-6Y C(15)-methyltransferase
[decarboxylating] OS=Sulfolobus islandicus (strain
M.16.4 / Kamchatka #3) GN=cbiT PE=3 SV=1
Length = 199
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 71 KDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI 130
+D + T I A + K +RKGD ++D CG G T+ +V S G VYG+D
Sbjct: 17 RDEEIPMTKEEIRALALSKLRIRKGDMILDIGCGTGSVTVEASLLVG---STGKVYGVDK 73
Query: 131 QSEALKST 138
+ +A+ T
Sbjct: 74 EEKAINLT 81
>sp|C3N0H8|CBIT_SULIA Probable cobalt-precorrin-6Y C(15)-methyltransferase
[decarboxylating] OS=Sulfolobus islandicus (strain
M.16.27) GN=cbiT PE=3 SV=1
Length = 199
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 71 KDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI 130
+D + T I A + K +RKGD ++D CG G T+ +V S G VYG+D
Sbjct: 17 RDEEIPMTKEEIRALALSKLRIRKGDMILDIGCGTGSVTVEASLLVG---STGKVYGVDK 73
Query: 131 QSEALKST 138
+ +A+ T
Sbjct: 74 EEKAINLT 81
>sp|C3NJQ5|CBIT_SULIN Probable cobalt-precorrin-6Y C(15)-methyltransferase
[decarboxylating] OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=cbiT PE=3 SV=1
Length = 199
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 71 KDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI 130
+D + T I A + K +RKGD ++D CG G T+ +V S G VYG+D
Sbjct: 17 RDEEIPMTKEEIRALALSKLRIRKGDMILDIGCGTGSVTVEASLLVG---STGKVYGVDK 73
Query: 131 QSEALKST 138
+ +A+ T
Sbjct: 74 EEKAINLT 81
>sp|C1DQS9|CMOB_AZOVD tRNA (mo5U34)-methyltransferase OS=Azotobacter vinelandii (strain
DJ / ATCC BAA-1303) GN=cmoB PE=3 SV=1
Length = 319
Score = 34.7 bits (78), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Query: 75 LSGTLITIAANGVWK------HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL 128
L G L+ WK H+ +G ++D CGNGY ML AD CV G+
Sbjct: 93 LFGVLVDTEWRSDWKWQRVAPHLDLRGRRILDVGCGNGYYMWRMLGAGAD-----CVIGI 147
Query: 129 D 129
D
Sbjct: 148 D 148
>sp|Q2SZE1|PRMA_BURTA Ribosomal protein L11 methyltransferase OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=prmA PE=3 SV=1
Length = 300
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ G TV+D CG+G +L ++A + AG V G+DI +A+++ ++ +
Sbjct: 160 EQTVQPGQTVLDYGCGSG-----ILAILAKKCGAGNVTGIDIDPQAVEAARQNSERNRAD 214
Query: 149 AEKGL 153
GL
Sbjct: 215 VTYGL 219
>sp|Q7T3C7|RT4I1_DANRE Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Danio
rerio GN=rtn4ip1 PE=2 SV=2
Length = 387
Score = 34.3 bits (77), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 3 RYMTLSLRCWSRSLSFAIPRNTLLPFPAAALSKANVN-VLRFSSSCC 48
R++ SLRC RS SF+ R T++ PA + K N VLRF+ +
Sbjct: 6 RWLVCSLRCHYRSFSFSAARRTVM--PAWVIDKYGKNDVLRFTKNAA 50
>sp|A6H0V1|PIMT_FLAPJ Protein-L-isoaspartate O-methyltransferase OS=Flavobacterium
psychrophilum (strain JIP02/86 / ATCC 49511) GN=pcm PE=3
SV=1
Length = 213
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
V+KGD V++ G+GY T ++ + A VY ++ Q+E K TS LL K +A+
Sbjct: 78 VKKGDKVLEIGTGSGYQTAVLCMVGA------VVYSVERQNELFKKTSLLLPKLGIRAK 130
>sp|Q63QN9|PRMA_BURPS Ribosomal protein L11 methyltransferase OS=Burkholderia
pseudomallei (strain K96243) GN=prmA PE=3 SV=1
Length = 300
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ G TV+D CG+G +L ++A + AG V G+DI +A+++ ++ +
Sbjct: 160 EQTVQPGQTVLDYGCGSG-----ILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNRAD 214
Query: 149 AEKGL 153
GL
Sbjct: 215 VTYGL 219
>sp|A3NDQ7|PRMA_BURP6 Ribosomal protein L11 methyltransferase OS=Burkholderia
pseudomallei (strain 668) GN=prmA PE=3 SV=1
Length = 300
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ G TV+D CG+G +L ++A + AG V G+DI +A+++ ++ +
Sbjct: 160 EQTVQPGQTVLDYGCGSG-----ILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNRAD 214
Query: 149 AEKGL 153
GL
Sbjct: 215 VTYGL 219
>sp|Q3JNI0|PRMA_BURP1 Ribosomal protein L11 methyltransferase OS=Burkholderia
pseudomallei (strain 1710b) GN=prmA PE=3 SV=1
Length = 300
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ G TV+D CG+G +L ++A + AG V G+DI +A+++ ++ +
Sbjct: 160 EQTVQPGQTVLDYGCGSG-----ILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNRAD 214
Query: 149 AEKGL 153
GL
Sbjct: 215 VTYGL 219
>sp|A1V0M1|PRMA_BURMS Ribosomal protein L11 methyltransferase OS=Burkholderia mallei
(strain SAVP1) GN=prmA PE=3 SV=1
Length = 300
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ G TV+D CG+G +L ++A + AG V G+DI +A+++ ++ +
Sbjct: 160 EQTVQPGQTVLDYGCGSG-----ILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNRAD 214
Query: 149 AEKGL 153
GL
Sbjct: 215 VTYGL 219
>sp|Q62GX2|PRMA_BURMA Ribosomal protein L11 methyltransferase OS=Burkholderia mallei
(strain ATCC 23344) GN=prmA PE=3 SV=1
Length = 300
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ G TV+D CG+G +L ++A + AG V G+DI +A+++ ++ +
Sbjct: 160 EQTVQPGQTVLDYGCGSG-----ILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNRAD 214
Query: 149 AEKGL 153
GL
Sbjct: 215 VTYGL 219
>sp|A2S5P8|PRMA_BURM9 Ribosomal protein L11 methyltransferase OS=Burkholderia mallei
(strain NCTC 10229) GN=prmA PE=3 SV=1
Length = 300
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ G TV+D CG+G +L ++A + AG V G+DI +A+++ ++ +
Sbjct: 160 EQTVQPGQTVLDYGCGSG-----ILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNRAD 214
Query: 149 AEKGL 153
GL
Sbjct: 215 VTYGL 219
>sp|A3MRB1|PRMA_BURM7 Ribosomal protein L11 methyltransferase OS=Burkholderia mallei
(strain NCTC 10247) GN=prmA PE=3 SV=1
Length = 300
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ G TV+D CG+G +L ++A + AG V G+DI +A+++ ++ +
Sbjct: 160 EQTVQPGQTVLDYGCGSG-----ILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNRAD 214
Query: 149 AEKGL 153
GL
Sbjct: 215 VTYGL 219
>sp|Q97WC7|CBIT_SULSO Probable cobalt-precorrin-6Y C(15)-methyltransferase
[decarboxylating] OS=Sulfolobus solfataricus (strain
ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=cbiT PE=3
SV=1
Length = 199
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 71 KDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDI 130
+D + T I A + K ++KGD V+D CG G T+ +V + +G VYG+D
Sbjct: 17 RDEEIPMTKEEIRALALSKLRIKKGDKVLDIGCGTGSITVEASLLVGN---SGRVYGIDK 73
Query: 131 QSEALKST 138
+ +A+ T
Sbjct: 74 EEKAINLT 81
>sp|Q1LIT8|PRMA_RALME Ribosomal protein L11 methyltransferase OS=Ralstonia metallidurans
(strain CH34 / ATCC 43123 / DSM 2839) GN=prmA PE=3 SV=1
Length = 304
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST 138
VR G+TV+D CG+G +L +VA + AG G+DI A+ ++
Sbjct: 163 VRAGETVLDYGCGSG-----ILAIVAKKLGAGDTVGIDIDPNAVDAS 204
>sp|Q31II5|PRMA_THICR Ribosomal protein L11 methyltransferase OS=Thiomicrospira crunogena
(strain XCL-2) GN=prmA PE=3 SV=1
Length = 294
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL 156
TV+D CG+G +L + A++ A V G DI +A+ ++ D+ + E LVK
Sbjct: 161 TVIDYGCGSG-----VLALAAEKLGAKHVKGTDIDPQAIIASQQNADRNNANIEFKLVKE 215
Query: 157 FN 158
F
Sbjct: 216 FQ 217
>sp|A9KS30|RSMH1_CLOPH Ribosomal RNA small subunit methyltransferase H 1 OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=rsmH1 PE=3 SV=1
Length = 366
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 53 FQQKQSCSTNNCTPLPLCKDSPLSGTLITIAANGVWKHV-VRKGDTVVDATCGNGYDTLM 111
++++Q + + K S +G I+I N + + + ++ G +DAT G G T
Sbjct: 43 YKERQPEKYADTIEKVIQKGSTPAGMHISICVNEILEFLQIKPGQKGLDATLGYGGHTRE 102
Query: 112 MLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171
MLK + S G +Y LD+ + T L E +K N + ++E+V ++
Sbjct: 103 MLKCL---ESQGHMYALDVDPIEIVKTRERLQNLGFGPEILTIKQLNFAN--IDEVVEEA 157
Query: 172 TAVRLVAFNLG 182
V +LG
Sbjct: 158 GLFDFVLADLG 168
>sp|Q5FAH7|PRMA_NEIG1 Ribosomal protein L11 methyltransferase OS=Neisseria gonorrhoeae
(strain ATCC 700825 / FA 1090) GN=prmA PE=3 SV=1
Length = 295
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
++ G++V+D CG+G T+ LK+ AG G+DI +A++S ++ A+
Sbjct: 161 LKNGESVLDYGCGSGILTIAALKL-----GAGSAVGVDIDEQAVRSGRDNAEQNNVDAQ 214
>sp|B2JH19|PRMA_BURP8 Ribosomal protein L11 methyltransferase OS=Burkholderia phymatum
(strain DSM 17167 / STM815) GN=prmA PE=3 SV=1
Length = 300
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+K +V+D CG+G +L ++A + A V+G+DI +A++S ++ ++
Sbjct: 160 EQSVQKDQSVLDYGCGSG-----ILAILAKKCGANPVFGIDIDPQAVESARHNSERNRAE 214
Query: 149 AEKGL 153
GL
Sbjct: 215 ITYGL 219
>sp|O13648|ANM3_SCHPO Ribosomal protein arginine N-methytransferase rmt3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rmt3 PE=1 SV=3
Length = 543
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 23/130 (17%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
KH+ G TV+D CG G +L M ++ A VY +D S ++ S
Sbjct: 251 KHIF-AGKTVLDVGCGTG-----ILSMFCAKAGAKKVYAVD--------NSDIIQMAISN 296
Query: 149 A-EKGLVKLFNMCHSRMEEI-VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE 206
A E GL ++E+I +P +++ +GY +T L A +
Sbjct: 297 AFENGLADQITFIRGKIEDISLPVGKVDIIISEWMGY-------ALTFESMIDSVLVARD 349
Query: 207 RILIPGGLIS 216
R L P G+++
Sbjct: 350 RFLAPSGIMA 359
>sp|Q5ZYB1|PRMA_LEGPH Ribosomal protein L11 methyltransferase OS=Legionella pneumophila
subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 /
DSM 7513) GN=prmA PE=3 SV=1
Length = 289
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
K +++D CG+G +L +K+ A VY +DI ++AL++T S
Sbjct: 155 KNKSIIDYGCGSGILSLAAIKL-----GAKHVYAVDIDNQALQATQS 196
>sp|Q5WZ79|PRMA_LEGPL Ribosomal protein L11 methyltransferase OS=Legionella pneumophila
(strain Lens) GN=prmA PE=3 SV=1
Length = 289
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
K +++D CG+G +L +K+ A VY +DI ++AL++T S
Sbjct: 155 KNKSIIDYGCGSGILSLAAIKL-----GAKHVYAVDIDNQALQATQS 196
>sp|Q5X7S8|PRMA_LEGPA Ribosomal protein L11 methyltransferase OS=Legionella pneumophila
(strain Paris) GN=prmA PE=3 SV=1
Length = 289
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140
K +++D CG+G +L +K+ A VY +DI ++AL++T S
Sbjct: 155 KNKSIIDYGCGSGILSLAAIKL-----GAKHVYAVDIDNQALQATQS 196
>sp|O86951|PRMA_THENE Ribosomal protein L11 methyltransferase OS=Thermotoga neapolitana
GN=prmA PE=3 SV=2
Length = 264
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALK 136
K ++KGD VVD CG G +L +VA + A V +D+ +A++
Sbjct: 124 KKYLKKGDRVVDVGCGTG-----ILAIVAKKLGASYVLAVDVDEQAVE 166
>sp|Q6GGU0|UBIE_STAAR Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain MRSA252) GN=ubiE PE=3 SV=1
Length = 241
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 27/144 (18%)
Query: 78 TLITIAANGVWKHVV------RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ 131
+I+ + VW+ V RKG +D CG G T+ + K V S G V G+D
Sbjct: 27 NIISFEQHKVWRKRVMKDMGVRKGMKALDVCCGTGDWTIALSKAVG---STGEVTGIDFS 83
Query: 132 SEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSV 191
L+ +KT S LV H E+ + + V G D V
Sbjct: 84 ENMLEVGK---EKTASMENVKLV------HGDAMELPFEDNSFDYVTIGFGLRNVPDYLV 134
Query: 192 ITTSETTKMALEAAERILIPGGLI 215
AL+ R+L PGG++
Sbjct: 135 ---------ALKEMNRVLKPGGMV 149
>sp|B9K9N3|PRMA_THENN Ribosomal protein L11 methyltransferase OS=Thermotoga neapolitana
(strain ATCC 49049 / DSM 4359 / NS-E) GN=prmA PE=3 SV=1
Length = 264
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALK 136
K ++KGD VVD CG G +L +VA + A V +D+ +A++
Sbjct: 124 KKYLKKGDRVVDVGCGTG-----ILAIVAKKLGASYVMAVDVDEQAVE 166
>sp|Q46XA5|PRMA_CUPPJ Ribosomal protein L11 methyltransferase OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=prmA PE=3
SV=1
Length = 297
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
++ G+TV+D CG+G +L +VA + AG G+DI A++++ ++ +A+
Sbjct: 163 LKAGETVLDYGCGSG-----ILAIVAKKLGAGDTLGIDIDPNAVEASRYNAERNQVQADF 217
Query: 152 GL 153
L
Sbjct: 218 AL 219
>sp|B1JVC0|PRMA_BURCC Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia
(strain MC0-3) GN=prmA PE=3 SV=1
Length = 300
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V+ G +V+D CG+G +L ++A + A V G+DI +A++S ++ ++
Sbjct: 163 VKPGQSVLDYGCGSG-----ILAILAKKCGANPVIGIDIDPQAVESARQNSERNRAEVTY 217
Query: 152 GL 153
GL
Sbjct: 218 GL 219
>sp|A0K4C9|PRMA_BURCH Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia
(strain HI2424) GN=prmA PE=3 SV=1
Length = 300
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V+ G +V+D CG+G +L ++A + A V G+DI +A++S ++ ++
Sbjct: 163 VKPGQSVLDYGCGSG-----ILAILAKKCGANPVIGIDIDPQAVESARQNSERNRAEVTY 217
Query: 152 GL 153
GL
Sbjct: 218 GL 219
>sp|Q1BZC1|PRMA_BURCA Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia
(strain AU 1054) GN=prmA PE=3 SV=1
Length = 300
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V+ G +V+D CG+G +L ++A + A V G+DI +A++S ++ ++
Sbjct: 163 VKPGQSVLDYGCGSG-----ILAILAKKCGANPVIGIDIDPQAVESARQNSERNRAEVTY 217
Query: 152 GL 153
GL
Sbjct: 218 GL 219
>sp|B4E5V2|PRMA_BURCJ Ribosomal protein L11 methyltransferase OS=Burkholderia cepacia
(strain J2315 / LMG 16656) GN=prmA PE=3 SV=1
Length = 300
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ G +V+D CG+G +L ++A + A V G+DI +A++S ++ ++
Sbjct: 160 EQSVKPGQSVLDYGCGSG-----ILAILAKKCGANPVIGIDIDPQAVESARQNSERNRAE 214
Query: 149 AEKGL 153
GL
Sbjct: 215 VTYGL 219
>sp|Q0BIF9|PRMA_BURCM Ribosomal protein L11 methyltransferase OS=Burkholderia ambifaria
(strain ATCC BAA-244 / AMMD) GN=prmA PE=3 SV=1
Length = 300
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ G +V+D CG+G +L ++A + A V G+DI +A++S ++ ++
Sbjct: 160 EQSVKPGQSVLDYGCGSG-----ILAILARKCGANPVVGIDIDPQAVESARQNSERNHAE 214
Query: 149 AEKGL 153
GL
Sbjct: 215 VTYGL 219
>sp|B1YSW5|PRMA_BURA4 Ribosomal protein L11 methyltransferase OS=Burkholderia ambifaria
(strain MC40-6) GN=prmA PE=3 SV=1
Length = 300
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK 151
V+ G +V+D CG+G +L ++A + A V G+DI +A++S ++ ++
Sbjct: 163 VKPGQSVLDYGCGSG-----ILAILARKCGANPVVGIDIDPQAVESARQNSERNHAEVTY 217
Query: 152 GL 153
GL
Sbjct: 218 GL 219
>sp|A9AI41|PRMA_BURM1 Ribosomal protein L11 methyltransferase OS=Burkholderia multivorans
(strain ATCC 17616 / 249) GN=prmA PE=3 SV=1
Length = 300
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK 148
+ V+ G +V+D CG+G +L ++A + A V G+DI +A++S ++ ++
Sbjct: 160 EQSVQPGQSVLDYGCGSG-----ILAILAKKCGANPVVGIDIDPQAVESARQNSERNRAE 214
Query: 149 AEKGL 153
GL
Sbjct: 215 VTYGL 219
>sp|Q08A71|ANM6_ARATH Probable protein arginine N-methyltransferase 6 OS=Arabidopsis
thaliana GN=PRMT6 PE=2 SV=1
Length = 435
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL 153
+G VVD CG G +L + ++ A VY +D A+++ K KA GL
Sbjct: 118 EGKVVVDVGCGTG-----ILSIFCAQAGAKRVYAVDASDIAVQA------KEVVKA-NGL 165
Query: 154 VKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG 213
+ H R+E++ +++ +GY+ + + A +R L PGG
Sbjct: 166 SDKVIVLHGRVEDVEIDEEVDVIISEWMGYM-------LLYESMLGSVITARDRWLKPGG 218
Query: 214 LI 215
LI
Sbjct: 219 LI 220
>sp|A1KS36|PRMA_NEIMF Ribosomal protein L11 methyltransferase OS=Neisseria meningitidis
serogroup C / serotype 2a (strain ATCC 700532 / FAM18)
GN=prmA PE=3 SV=1
Length = 295
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE 150
++ G++V+D CG+G T+ LK+ AG G+DI +A+++ ++ A+
Sbjct: 161 LKNGESVLDYGCGSGILTIAALKL-----GAGSAVGVDIDEQAVRAGKDNAEQNNVDAQ 214
>sp|Q3MD91|UBIE_ANAVT Demethylmenaquinone methyltransferase OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=ubiE PE=3 SV=1
Length = 229
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 80 ITIAANGVWKHVVRK------GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE 133
+++ + +WK + K GDT +D CG+G L + + V S G VYG+D +
Sbjct: 23 LSLGQHRIWKEMAIKWTGAKPGDTCLDLCCGSGDLALRLARRVG---STGQVYGVDFSAN 79
Query: 134 ALKSTSS 140
L++
Sbjct: 80 LLETAKQ 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,860,441
Number of Sequences: 539616
Number of extensions: 3349501
Number of successful extensions: 10784
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 10759
Number of HSP's gapped (non-prelim): 80
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)