Query 041272
Match_columns 267
No_of_seqs 290 out of 1672
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:28:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06962 rRNA_methylase: Putat 99.9 2.3E-24 5E-29 164.7 14.8 139 124-266 1-140 (140)
2 COG2226 UbiE Methylase involve 99.8 5.5E-19 1.2E-23 147.7 16.2 114 91-224 48-161 (238)
3 PF01209 Ubie_methyltran: ubiE 99.8 1.9E-18 4.1E-23 145.5 12.4 115 91-224 44-158 (233)
4 PF12847 Methyltransf_18: Meth 99.8 7.8E-18 1.7E-22 125.8 13.1 111 94-219 1-111 (112)
5 PF13847 Methyltransf_31: Meth 99.8 1.1E-17 2.4E-22 132.1 13.2 111 93-221 2-112 (152)
6 PRK00107 gidB 16S rRNA methylt 99.8 6.4E-17 1.4E-21 131.7 17.6 147 90-267 41-187 (187)
7 PLN02233 ubiquinone biosynthes 99.8 5.5E-17 1.2E-21 139.2 17.1 117 91-223 70-186 (261)
8 COG2518 Pcm Protein-L-isoaspar 99.7 2.1E-17 4.5E-22 134.4 12.2 128 63-220 41-170 (209)
9 PRK13944 protein-L-isoaspartat 99.7 5.8E-17 1.3E-21 134.3 15.0 106 91-220 69-174 (205)
10 COG4123 Predicted O-methyltran 99.7 6.1E-17 1.3E-21 135.5 15.1 155 93-264 43-208 (248)
11 PRK13942 protein-L-isoaspartat 99.7 8.3E-17 1.8E-21 134.0 14.5 110 85-219 67-176 (212)
12 COG2227 UbiG 2-polyprenyl-3-me 99.7 2.6E-17 5.6E-22 135.7 10.0 106 94-222 59-164 (243)
13 COG2230 Cfa Cyclopropane fatty 99.7 1.2E-16 2.6E-21 136.0 13.9 139 61-223 40-180 (283)
14 PF01135 PCMT: Protein-L-isoas 99.7 3.4E-17 7.3E-22 135.4 10.1 117 79-220 57-173 (209)
15 PLN02244 tocopherol O-methyltr 99.7 1.4E-16 3E-21 141.7 14.8 109 93-221 117-225 (340)
16 TIGR02752 MenG_heptapren 2-hep 99.7 6.7E-16 1.4E-20 130.2 17.7 111 91-220 42-152 (231)
17 TIGR00080 pimt protein-L-isoas 99.7 2.2E-16 4.7E-21 131.9 14.3 106 90-220 73-178 (215)
18 PF05175 MTS: Methyltransferas 99.7 9.6E-16 2.1E-20 123.3 16.9 111 94-220 31-141 (170)
19 PRK14966 unknown domain/N5-glu 99.7 2.8E-15 6E-20 134.4 20.2 132 92-240 249-396 (423)
20 PF02353 CMAS: Mycolic acid cy 99.7 3.2E-16 7E-21 134.8 13.8 113 85-220 53-167 (273)
21 TIGR00138 gidB 16S rRNA methyl 99.7 8E-16 1.7E-20 124.9 15.0 132 94-256 42-173 (181)
22 PRK11036 putative S-adenosyl-L 99.7 3.4E-16 7.3E-21 134.0 13.5 109 93-221 43-151 (255)
23 PRK15451 tRNA cmo(5)U34 methyl 99.7 3.6E-16 7.8E-21 133.3 13.3 121 83-221 45-166 (247)
24 PF13659 Methyltransf_26: Meth 99.7 4.9E-16 1.1E-20 117.0 12.5 116 95-220 1-116 (117)
25 PRK04266 fibrillarin; Provisio 99.7 1.8E-15 3.9E-20 126.8 17.1 145 90-255 68-213 (226)
26 PRK11873 arsM arsenite S-adeno 99.7 8.1E-16 1.8E-20 132.9 15.4 113 91-222 74-186 (272)
27 PF08241 Methyltransf_11: Meth 99.7 3.9E-16 8.5E-21 112.5 10.4 95 99-217 1-95 (95)
28 TIGR03533 L3_gln_methyl protei 99.7 3.4E-15 7.4E-20 129.6 18.1 116 94-220 121-252 (284)
29 COG2890 HemK Methylase of poly 99.7 6.6E-15 1.4E-19 127.2 19.3 127 97-242 113-255 (280)
30 PRK00121 trmB tRNA (guanine-N( 99.7 1.5E-15 3.3E-20 125.5 14.8 117 94-220 40-157 (202)
31 PRK07402 precorrin-6B methylas 99.7 1.8E-14 3.8E-19 118.6 21.0 133 91-251 37-169 (196)
32 PRK08287 cobalt-precorrin-6Y C 99.7 2.4E-14 5.2E-19 116.9 20.1 121 91-241 28-148 (187)
33 PLN02396 hexaprenyldihydroxybe 99.7 7.2E-16 1.6E-20 135.4 11.3 107 94-221 131-237 (322)
34 TIGR00091 tRNA (guanine-N(7)-) 99.7 3.5E-15 7.5E-20 122.6 14.6 118 94-220 16-133 (194)
35 PTZ00098 phosphoethanolamine N 99.7 4.8E-15 1E-19 127.4 16.0 143 90-254 48-204 (263)
36 KOG1270 Methyltransferases [Co 99.6 1.8E-16 3.8E-21 131.7 6.3 104 95-221 90-197 (282)
37 TIGR00740 methyltransferase, p 99.6 3.4E-15 7.3E-20 126.6 14.3 118 87-222 46-164 (239)
38 COG2242 CobL Precorrin-6B meth 99.6 3.1E-14 6.8E-19 113.5 18.8 129 85-242 25-153 (187)
39 PRK00377 cbiT cobalt-precorrin 99.6 2.8E-14 6E-19 117.6 19.4 112 89-220 35-146 (198)
40 PRK14967 putative methyltransf 99.6 1.1E-14 2.4E-19 122.3 16.9 123 84-220 26-160 (223)
41 PRK11207 tellurite resistance 99.6 7.1E-15 1.5E-19 121.1 15.1 106 92-219 28-134 (197)
42 KOG1540 Ubiquinone biosynthesi 99.6 6.5E-15 1.4E-19 121.7 14.3 116 93-223 99-218 (296)
43 TIGR00536 hemK_fam HemK family 99.6 2.5E-14 5.3E-19 124.4 18.7 114 96-220 116-245 (284)
44 PRK14103 trans-aconitate 2-met 99.6 2.7E-15 5.9E-20 128.5 12.4 102 91-220 26-127 (255)
45 PTZ00146 fibrillarin; Provisio 99.6 1.6E-14 3.4E-19 124.0 16.6 156 89-264 127-285 (293)
46 TIGR00537 hemK_rel_arch HemK-r 99.6 2.6E-14 5.5E-19 116.0 16.3 112 93-220 18-141 (179)
47 PRK11805 N5-glutamine S-adenos 99.6 1.8E-14 3.9E-19 126.3 16.0 114 96-220 135-264 (307)
48 TIGR02469 CbiT precorrin-6Y C5 99.6 1.4E-14 3.1E-19 109.8 13.5 108 91-220 16-123 (124)
49 PLN02336 phosphoethanolamine N 99.6 1.8E-14 3.9E-19 133.9 16.7 109 92-222 264-372 (475)
50 PRK13168 rumA 23S rRNA m(5)U19 99.6 3.5E-14 7.5E-19 130.8 18.1 132 92-255 295-427 (443)
51 PF08242 Methyltransf_12: Meth 99.6 1.7E-16 3.6E-21 116.2 2.2 99 99-215 1-99 (99)
52 PRK15128 23S rRNA m(5)C1962 me 99.6 3E-14 6.5E-19 128.7 16.6 161 92-262 218-380 (396)
53 TIGR03534 RF_mod_PrmC protein- 99.6 8.1E-14 1.8E-18 118.7 18.5 130 93-240 86-232 (251)
54 TIGR03704 PrmC_rel_meth putati 99.6 2.9E-14 6.4E-19 121.6 15.7 114 95-220 87-217 (251)
55 TIGR00446 nop2p NOL1/NOP2/sun 99.6 7.4E-14 1.6E-18 120.1 17.5 137 91-240 68-218 (264)
56 smart00828 PKS_MT Methyltransf 99.6 1.1E-14 2.5E-19 122.1 12.1 139 96-254 1-146 (224)
57 PF06325 PrmA: Ribosomal prote 99.6 2.2E-14 4.7E-19 124.2 13.9 139 78-252 145-283 (295)
58 PRK01683 trans-aconitate 2-met 99.6 1.5E-14 3.3E-19 124.0 12.8 104 91-220 28-131 (258)
59 COG2264 PrmA Ribosomal protein 99.6 5E-14 1.1E-18 121.0 15.8 142 79-252 147-288 (300)
60 PRK01544 bifunctional N5-gluta 99.6 9.1E-14 2E-18 129.5 18.6 129 94-239 138-283 (506)
61 TIGR00477 tehB tellurite resis 99.6 2.4E-14 5.1E-19 117.8 12.9 105 93-220 29-134 (195)
62 PLN02490 MPBQ/MSBQ methyltrans 99.6 2.2E-14 4.8E-19 126.5 13.5 140 93-255 112-259 (340)
63 PRK00517 prmA ribosomal protei 99.6 7.3E-14 1.6E-18 119.3 16.3 126 88-252 113-238 (250)
64 PRK15001 SAM-dependent 23S rib 99.6 3.3E-14 7.2E-19 127.1 14.7 113 95-220 229-341 (378)
65 PRK13943 protein-L-isoaspartat 99.6 5.2E-14 1.1E-18 123.6 15.5 105 90-219 76-180 (322)
66 TIGR00406 prmA ribosomal prote 99.6 8E-14 1.7E-18 121.4 16.4 114 82-220 147-260 (288)
67 PRK00312 pcm protein-L-isoaspa 99.6 5.8E-14 1.2E-18 117.0 14.8 103 90-220 74-176 (212)
68 COG4106 Tam Trans-aconitate me 99.6 1.2E-14 2.6E-19 117.4 10.1 112 85-222 21-132 (257)
69 PRK14968 putative methyltransf 99.6 8.3E-14 1.8E-18 113.4 15.2 115 93-220 22-149 (188)
70 COG2519 GCD14 tRNA(1-methylade 99.6 3E-14 6.6E-19 118.5 12.5 114 83-220 83-196 (256)
71 PF08704 GCD14: tRNA methyltra 99.6 4.7E-14 1E-18 119.1 13.4 139 81-248 27-167 (247)
72 KOG2904 Predicted methyltransf 99.6 2.4E-13 5.2E-18 113.5 17.3 159 94-266 148-327 (328)
73 PRK00216 ubiE ubiquinone/menaq 99.6 2E-13 4.3E-18 115.3 16.2 113 92-222 49-161 (239)
74 PRK11783 rlmL 23S rRNA m(2)G24 99.6 9.6E-14 2.1E-18 134.2 16.0 119 93-221 537-658 (702)
75 PRK12335 tellurite resistance 99.6 7.9E-14 1.7E-18 121.4 14.0 103 94-220 120-224 (287)
76 COG2813 RsmC 16S RNA G1207 met 99.6 1.2E-13 2.6E-18 118.0 14.6 110 94-220 158-267 (300)
77 PRK15068 tRNA mo(5)U34 methylt 99.5 5.1E-14 1.1E-18 124.3 12.3 107 93-220 121-227 (322)
78 PRK03522 rumB 23S rRNA methylu 99.5 6.1E-13 1.3E-17 117.3 19.0 127 94-255 173-299 (315)
79 PRK10901 16S rRNA methyltransf 99.5 2.6E-13 5.5E-18 124.4 17.1 138 91-240 241-391 (427)
80 PRK09328 N5-glutamine S-adenos 99.5 3.8E-13 8.3E-18 116.2 17.3 116 92-219 106-238 (275)
81 TIGR02085 meth_trns_rumB 23S r 99.5 8.6E-13 1.9E-17 118.9 20.1 127 94-255 233-359 (374)
82 TIGR03587 Pse_Me-ase pseudamin 99.5 3.3E-13 7.1E-18 111.6 16.0 147 91-267 40-204 (204)
83 PRK09489 rsmC 16S ribosomal RN 99.5 1.9E-13 4E-18 121.4 15.3 109 94-220 196-304 (342)
84 TIGR00479 rumA 23S rRNA (uraci 99.5 4.2E-13 9E-18 123.3 18.1 133 92-255 290-423 (431)
85 PRK06922 hypothetical protein; 99.5 8E-14 1.7E-18 130.5 13.2 116 93-220 417-538 (677)
86 PRK14901 16S rRNA methyltransf 99.5 3.4E-13 7.3E-18 123.9 17.2 142 91-241 249-404 (434)
87 TIGR01177 conserved hypothetic 99.5 1.3E-13 2.9E-18 122.2 14.1 117 91-220 179-295 (329)
88 PF13649 Methyltransf_25: Meth 99.5 5.9E-14 1.3E-18 103.1 9.8 100 98-213 1-101 (101)
89 PRK14904 16S rRNA methyltransf 99.5 1.5E-13 3.1E-18 126.7 14.6 137 91-240 247-396 (445)
90 PRK10258 biotin biosynthesis p 99.5 7.7E-14 1.7E-18 119.1 11.9 101 94-221 42-142 (251)
91 TIGR00452 methyltransferase, p 99.5 1.1E-13 2.3E-18 121.2 13.0 108 92-220 119-226 (314)
92 PRK08317 hypothetical protein; 99.5 1.6E-13 3.5E-18 115.6 13.6 111 90-220 15-125 (241)
93 PRK14903 16S rRNA methyltransf 99.5 2.1E-13 4.6E-18 124.8 15.3 140 91-241 234-386 (431)
94 PRK14902 16S rRNA methyltransf 99.5 3.7E-13 7.9E-18 124.1 16.9 138 92-240 248-398 (444)
95 PRK14121 tRNA (guanine-N(7)-)- 99.5 2.3E-13 4.9E-18 121.4 14.4 116 93-220 121-236 (390)
96 COG2265 TrmA SAM-dependent met 99.5 4.7E-13 1E-17 121.7 16.4 145 78-255 279-423 (432)
97 PRK11705 cyclopropane fatty ac 99.5 1.7E-13 3.8E-18 123.5 13.4 105 89-220 162-268 (383)
98 KOG3191 Predicted N6-DNA-methy 99.5 1.7E-12 3.7E-17 102.2 16.7 114 95-220 44-169 (209)
99 PRK05031 tRNA (uracil-5-)-meth 99.5 1.8E-12 3.8E-17 116.3 18.9 127 95-255 207-346 (362)
100 PRK11188 rrmJ 23S rRNA methylt 99.5 4.8E-13 1E-17 111.1 14.0 112 92-221 49-167 (209)
101 PLN02672 methionine S-methyltr 99.5 1.2E-12 2.7E-17 129.4 18.9 132 95-239 119-293 (1082)
102 TIGR00563 rsmB ribosomal RNA s 99.5 1.2E-12 2.7E-17 119.9 17.8 141 91-241 235-388 (426)
103 TIGR03840 TMPT_Se_Te thiopurin 99.5 4.5E-13 9.8E-18 111.4 13.1 114 93-221 33-154 (213)
104 PF05401 NodS: Nodulation prot 99.5 8.4E-13 1.8E-17 106.3 14.0 101 95-220 44-147 (201)
105 PLN02781 Probable caffeoyl-CoA 99.5 4.4E-13 9.6E-18 113.2 13.1 109 92-218 66-177 (234)
106 PF03848 TehB: Tellurite resis 99.5 5.4E-13 1.2E-17 108.3 13.0 106 94-221 30-135 (192)
107 PF13489 Methyltransf_23: Meth 99.5 3E-13 6.6E-18 107.0 11.4 99 92-222 20-118 (161)
108 TIGR02072 BioC biotin biosynth 99.5 5E-13 1.1E-17 112.7 12.6 103 94-220 34-136 (240)
109 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 3.7E-12 8.1E-17 106.3 17.1 109 92-221 37-145 (223)
110 TIGR03438 probable methyltrans 99.5 1.6E-12 3.4E-17 113.9 14.4 116 91-220 60-178 (301)
111 TIGR02143 trmA_only tRNA (urac 99.4 1.2E-11 2.6E-16 110.6 19.2 126 96-255 199-337 (353)
112 PRK05785 hypothetical protein; 99.4 2.3E-12 4.9E-17 108.4 13.4 91 93-212 50-140 (226)
113 PF01596 Methyltransf_3: O-met 99.4 1.4E-12 3E-17 107.6 11.8 108 93-218 44-154 (205)
114 PRK11088 rrmA 23S rRNA methylt 99.4 1.2E-12 2.6E-17 113.2 12.0 98 94-220 85-182 (272)
115 PF05958 tRNA_U5-meth_tr: tRNA 99.4 5.8E-12 1.2E-16 112.6 16.0 153 78-267 183-352 (352)
116 COG4122 Predicted O-methyltran 99.4 5E-12 1.1E-16 104.5 14.0 108 92-218 57-165 (219)
117 PLN02476 O-methyltransferase 99.4 5E-12 1.1E-16 108.4 14.5 108 93-218 117-227 (278)
118 PRK04457 spermidine synthase; 99.4 3.4E-12 7.4E-17 109.5 13.6 116 93-222 65-180 (262)
119 TIGR02716 C20_methyl_CrtF C-20 99.4 4.5E-12 9.7E-17 111.4 14.6 108 92-221 147-256 (306)
120 PLN03075 nicotianamine synthas 99.4 3.1E-12 6.7E-17 110.3 12.9 109 94-220 123-234 (296)
121 PF02390 Methyltransf_4: Putat 99.4 2.5E-12 5.4E-17 105.5 11.5 117 95-220 18-134 (195)
122 PRK00050 16S rRNA m(4)C1402 me 99.4 2E-11 4.3E-16 105.7 17.4 84 91-183 16-100 (296)
123 COG1092 Predicted SAM-dependen 99.4 8.1E-12 1.8E-16 111.7 15.4 132 86-225 210-342 (393)
124 KOG4300 Predicted methyltransf 99.4 1.5E-12 3.3E-17 104.6 9.5 107 96-222 78-185 (252)
125 TIGR00438 rrmJ cell division p 99.4 3.5E-12 7.5E-17 104.3 11.8 111 91-220 29-147 (188)
126 PRK06202 hypothetical protein; 99.4 2.5E-12 5.5E-17 108.5 11.1 107 93-220 59-167 (232)
127 PLN02336 phosphoethanolamine N 99.4 3.1E-12 6.7E-17 119.0 12.0 106 93-220 36-143 (475)
128 TIGR02021 BchM-ChlM magnesium 99.4 7.3E-12 1.6E-16 104.8 12.9 103 92-217 53-156 (219)
129 PRK10909 rsmD 16S rRNA m(2)G96 99.4 2.3E-11 5E-16 99.9 15.6 107 93-220 52-160 (199)
130 PRK13255 thiopurine S-methyltr 99.4 8.1E-12 1.8E-16 104.3 12.5 114 91-219 34-155 (218)
131 PRK05134 bifunctional 3-demeth 99.4 1.3E-11 2.8E-16 104.2 13.4 107 92-220 46-152 (233)
132 TIGR01983 UbiG ubiquinone bios 99.4 8.3E-12 1.8E-16 104.6 11.8 106 94-220 45-150 (224)
133 COG0220 Predicted S-adenosylme 99.4 1.7E-11 3.7E-16 102.4 13.1 115 96-220 50-165 (227)
134 PF07021 MetW: Methionine bios 99.3 8.9E-12 1.9E-16 100.1 10.9 96 87-208 6-101 (193)
135 KOG2187 tRNA uracil-5-methyltr 99.3 8.1E-12 1.8E-16 112.8 11.0 145 10-221 345-492 (534)
136 PHA03411 putative methyltransf 99.3 1.3E-11 2.8E-16 105.1 11.6 112 93-222 63-185 (279)
137 PHA03412 putative methyltransf 99.3 1.9E-11 4.2E-16 101.7 12.2 107 94-214 49-158 (241)
138 PRK00811 spermidine synthase; 99.3 5.6E-11 1.2E-15 103.2 15.6 116 93-219 75-191 (283)
139 KOG1271 Methyltransferases [Ge 99.3 2.4E-11 5.3E-16 95.9 12.0 113 92-220 64-182 (227)
140 KOG1541 Predicted protein carb 99.3 9.5E-11 2.1E-15 95.2 15.3 111 95-222 51-163 (270)
141 PLN02589 caffeoyl-CoA O-methyl 99.3 3.4E-11 7.3E-16 102.0 13.0 107 94-218 79-189 (247)
142 cd02440 AdoMet_MTases S-adenos 99.3 5.7E-11 1.2E-15 85.8 12.2 102 97-218 1-103 (107)
143 smart00138 MeTrc Methyltransfe 99.3 1.3E-11 2.8E-16 106.1 9.9 113 94-218 99-241 (264)
144 PF10672 Methyltrans_SAM: S-ad 99.3 5.3E-11 1.1E-15 102.6 12.6 121 93-223 122-242 (286)
145 smart00650 rADc Ribosomal RNA 99.3 6E-11 1.3E-15 95.3 12.1 101 91-218 10-112 (169)
146 COG1041 Predicted DNA modifica 99.3 1.5E-10 3.2E-15 101.1 15.2 117 91-220 194-311 (347)
147 PRK11727 23S rRNA mA1618 methy 99.3 2E-10 4.3E-15 100.7 16.2 89 94-189 114-205 (321)
148 PRK11933 yebU rRNA (cytosine-C 99.3 4.7E-10 1E-14 103.3 19.1 138 91-240 110-261 (470)
149 COG2263 Predicted RNA methylas 99.3 6.2E-10 1.3E-14 88.8 17.2 75 93-183 44-118 (198)
150 PRK07580 Mg-protoporphyrin IX 99.3 8.8E-11 1.9E-15 98.7 13.0 100 92-215 61-162 (230)
151 PF08003 Methyltransf_9: Prote 99.2 7.6E-11 1.6E-15 101.0 11.5 135 94-249 115-267 (315)
152 KOG1661 Protein-L-isoaspartate 99.2 7.6E-11 1.6E-15 95.1 10.5 123 78-220 66-194 (237)
153 PRK13256 thiopurine S-methyltr 99.2 1.3E-10 2.8E-15 97.0 12.2 118 91-221 40-165 (226)
154 TIGR00095 RNA methyltransferas 99.2 3.7E-10 8E-15 92.3 14.6 108 94-219 49-159 (189)
155 TIGR02081 metW methionine bios 99.2 7.9E-11 1.7E-15 96.7 10.7 94 91-211 10-104 (194)
156 PLN02585 magnesium protoporphy 99.2 2.3E-10 5E-15 100.4 13.8 104 94-219 144-249 (315)
157 PF02475 Met_10: Met-10+ like- 99.2 8.8E-11 1.9E-15 96.3 9.6 128 63-216 72-199 (200)
158 PLN02366 spermidine synthase 99.2 7.7E-10 1.7E-14 96.8 15.7 116 93-218 90-205 (308)
159 TIGR00417 speE spermidine synt 99.2 1.4E-09 3E-14 93.9 17.1 115 94-219 72-186 (270)
160 PF03291 Pox_MCEL: mRNA cappin 99.2 3.2E-10 6.9E-15 100.2 12.8 117 94-220 62-187 (331)
161 PRK01581 speE spermidine synth 99.2 1.5E-09 3.3E-14 95.9 16.1 117 93-219 149-268 (374)
162 PF05724 TPMT: Thiopurine S-me 99.2 8.1E-10 1.8E-14 92.1 13.5 114 91-219 34-155 (218)
163 PRK03612 spermidine synthase; 99.2 7.8E-10 1.7E-14 103.8 14.6 140 93-246 296-438 (521)
164 KOG1975 mRNA cap methyltransfe 99.1 3.7E-10 8.1E-15 96.6 11.0 124 87-220 110-238 (389)
165 COG0144 Sun tRNA and rRNA cyto 99.1 4.1E-09 9E-14 94.2 18.2 141 91-240 153-307 (355)
166 COG4976 Predicted methyltransf 99.1 1.2E-10 2.6E-15 95.2 7.0 137 92-255 123-268 (287)
167 COG3963 Phospholipid N-methylt 99.1 7.3E-09 1.6E-13 80.9 16.5 144 92-266 46-191 (194)
168 PF03602 Cons_hypoth95: Conser 99.1 9.6E-10 2.1E-14 89.3 12.3 127 77-220 25-154 (183)
169 PRK04338 N(2),N(2)-dimethylgua 99.1 5.9E-10 1.3E-14 100.4 11.5 101 95-219 58-158 (382)
170 KOG3010 Methyltransferase [Gen 99.1 5.5E-10 1.2E-14 92.1 10.2 117 81-221 21-139 (261)
171 KOG2361 Predicted methyltransf 99.1 2.2E-10 4.8E-15 94.4 7.5 110 97-220 74-184 (264)
172 PRK01544 bifunctional N5-gluta 99.1 1.2E-09 2.5E-14 102.2 12.9 117 94-220 347-463 (506)
173 PF01170 UPF0020: Putative RNA 99.1 1.2E-09 2.7E-14 88.5 11.4 112 91-211 25-143 (179)
174 TIGR00006 S-adenosyl-methyltra 99.1 2.8E-09 6E-14 92.6 14.2 84 91-183 17-102 (305)
175 KOG1663 O-methyltransferase [S 99.1 3.1E-09 6.6E-14 87.3 13.4 121 78-218 59-182 (237)
176 KOG2899 Predicted methyltransf 99.1 3.9E-09 8.4E-14 87.1 12.8 49 92-144 56-104 (288)
177 COG2521 Predicted archaeal met 99.0 1.3E-09 2.9E-14 89.4 9.2 141 92-249 132-274 (287)
178 PF10294 Methyltransf_16: Puta 99.0 4.5E-09 9.7E-14 84.7 12.3 113 92-220 43-157 (173)
179 COG2520 Predicted methyltransf 99.0 9.3E-09 2E-13 90.4 14.4 140 91-255 185-325 (341)
180 PF01269 Fibrillarin: Fibrilla 99.0 3E-08 6.5E-13 81.5 16.1 157 90-266 69-228 (229)
181 PTZ00338 dimethyladenosine tra 99.0 2.5E-09 5.5E-14 93.1 9.8 79 91-183 33-111 (294)
182 COG0742 N6-adenine-specific me 99.0 2.9E-08 6.2E-13 79.9 14.8 127 78-220 27-155 (187)
183 PRK00274 ksgA 16S ribosomal RN 99.0 3.1E-09 6.7E-14 91.8 9.3 77 91-183 39-115 (272)
184 PRK14896 ksgA 16S ribosomal RN 99.0 4.2E-09 9.1E-14 90.3 9.7 76 91-183 26-101 (258)
185 KOG1499 Protein arginine N-met 99.0 3.5E-09 7.7E-14 92.1 9.1 102 92-216 58-164 (346)
186 TIGR00755 ksgA dimethyladenosi 98.9 2.2E-08 4.7E-13 85.7 13.4 76 91-183 26-104 (253)
187 PF01795 Methyltransf_5: MraW 98.9 1.6E-08 3.4E-13 87.8 12.3 84 91-183 17-103 (310)
188 PF05185 PRMT5: PRMT5 arginine 98.9 1.2E-08 2.5E-13 93.7 10.7 104 95-216 187-294 (448)
189 TIGR00308 TRM1 tRNA(guanine-26 98.9 2.1E-08 4.6E-13 90.0 11.9 102 96-219 46-147 (374)
190 PLN02232 ubiquinone biosynthes 98.9 8.2E-09 1.8E-13 82.2 8.2 84 126-222 1-84 (160)
191 PF09445 Methyltransf_15: RNA 98.9 9.6E-09 2.1E-13 81.3 8.4 104 97-209 2-112 (163)
192 COG0275 Predicted S-adenosylme 98.9 9E-08 2E-12 81.9 14.7 85 91-183 20-106 (314)
193 PF00891 Methyltransf_2: O-met 98.9 2.3E-08 5E-13 84.8 10.9 102 92-223 98-203 (241)
194 PLN02823 spermine synthase 98.8 6.3E-08 1.4E-12 85.7 13.5 117 94-219 103-220 (336)
195 KOG1500 Protein arginine N-met 98.8 1.8E-08 4E-13 86.8 9.4 105 94-219 177-282 (517)
196 PF02384 N6_Mtase: N-6 DNA Met 98.8 4.2E-08 9.2E-13 86.4 12.1 127 92-222 44-186 (311)
197 PF01564 Spermine_synth: Sperm 98.8 2.4E-07 5.1E-12 78.9 15.9 118 93-220 75-192 (246)
198 KOG2915 tRNA(1-methyladenosine 98.8 8.7E-08 1.9E-12 80.5 12.5 135 83-245 94-228 (314)
199 TIGR00478 tly hemolysin TlyA f 98.8 8E-08 1.7E-12 80.5 12.5 130 93-252 74-217 (228)
200 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.8 1.1E-07 2.5E-12 82.5 12.7 141 91-241 82-239 (283)
201 PF06080 DUF938: Protein of un 98.8 1.3E-07 2.9E-12 77.2 11.9 126 84-223 14-145 (204)
202 COG0293 FtsJ 23S rRNA methylas 98.8 4.7E-07 1E-11 74.0 15.1 125 78-223 31-163 (205)
203 PF05148 Methyltransf_8: Hypot 98.8 1.3E-07 2.7E-12 77.1 11.4 116 93-253 71-186 (219)
204 COG1889 NOP1 Fibrillarin-like 98.7 6.4E-07 1.4E-11 72.3 14.8 155 90-265 72-229 (231)
205 COG0116 Predicted N6-adenine-s 98.7 2.1E-07 4.6E-12 82.6 13.1 122 91-220 188-345 (381)
206 PRK11783 rlmL 23S rRNA m(2)G24 98.7 3.2E-07 6.9E-12 89.2 15.2 119 93-220 189-348 (702)
207 COG0421 SpeE Spermidine syntha 98.7 3E-07 6.5E-12 79.4 12.8 112 96-218 78-189 (282)
208 PF13578 Methyltransf_24: Meth 98.7 2.6E-08 5.6E-13 73.5 5.0 105 99-219 1-105 (106)
209 PF05219 DREV: DREV methyltran 98.7 1.9E-07 4.1E-12 78.5 10.6 127 94-251 94-239 (265)
210 TIGR02987 met_A_Alw26 type II 98.7 7.3E-07 1.6E-11 84.1 15.9 126 94-223 31-200 (524)
211 KOG0820 Ribosomal RNA adenine 98.7 1.6E-07 3.5E-12 79.0 9.1 87 83-183 47-133 (315)
212 TIGR03439 methyl_EasF probable 98.6 9.2E-07 2E-11 77.8 14.2 118 91-219 73-197 (319)
213 PF02527 GidB: rRNA small subu 98.6 2.3E-06 5E-11 69.5 15.3 103 92-219 45-148 (184)
214 KOG1122 tRNA and rRNA cytosine 98.6 1.4E-06 3.1E-11 77.4 14.6 136 91-237 238-386 (460)
215 KOG3420 Predicted RNA methylas 98.6 1.5E-07 3.2E-12 71.9 7.1 77 94-183 48-124 (185)
216 COG0030 KsgA Dimethyladenosine 98.6 2.7E-07 5.8E-12 78.3 9.3 79 90-183 26-105 (259)
217 PF01728 FtsJ: FtsJ-like methy 98.6 7E-07 1.5E-11 72.4 11.1 113 94-224 23-144 (181)
218 PF01739 CheR: CheR methyltran 98.6 4.5E-07 9.8E-12 74.3 9.4 111 95-217 32-173 (196)
219 PF05891 Methyltransf_PK: AdoM 98.5 6.8E-07 1.5E-11 73.5 9.8 139 95-253 56-202 (218)
220 PRK00536 speE spermidine synth 98.5 6.6E-07 1.4E-11 76.4 9.5 101 93-219 71-171 (262)
221 PF12147 Methyltransf_20: Puta 98.5 1.7E-05 3.7E-10 67.8 16.5 117 95-224 136-254 (311)
222 PF08123 DOT1: Histone methyla 98.4 2.3E-06 4.9E-11 70.7 10.1 119 83-217 31-156 (205)
223 KOG4589 Cell division protein 98.4 6.6E-06 1.4E-10 65.7 12.2 115 91-224 66-189 (232)
224 KOG3045 Predicted RNA methylas 98.4 1.4E-06 3E-11 72.9 8.0 110 93-249 179-288 (325)
225 PRK11760 putative 23S rRNA C24 98.4 7.8E-05 1.7E-09 65.6 19.1 95 92-219 209-305 (357)
226 PRK10611 chemotaxis methyltran 98.4 1.6E-06 3.5E-11 75.1 8.6 112 96-217 117-260 (287)
227 PF04816 DUF633: Family of unk 98.4 3.2E-05 7E-10 63.9 15.6 133 98-262 1-134 (205)
228 COG4798 Predicted methyltransf 98.3 3E-06 6.6E-11 68.0 8.8 127 87-224 41-171 (238)
229 COG0357 GidB Predicted S-adeno 98.3 1.3E-05 2.8E-10 66.3 12.8 99 95-218 68-167 (215)
230 PRK04148 hypothetical protein; 98.3 6.9E-06 1.5E-10 62.8 10.1 94 94-220 16-110 (134)
231 PF00398 RrnaAD: Ribosomal RNA 98.3 3.6E-05 7.9E-10 66.2 14.3 94 91-208 27-120 (262)
232 PRK10742 putative methyltransf 98.2 9.2E-06 2E-10 68.4 9.6 86 91-184 83-175 (250)
233 KOG1709 Guanidinoacetate methy 98.2 2E-05 4.4E-10 64.3 10.5 106 92-217 99-204 (271)
234 KOG2730 Methylase [General fun 98.2 2.6E-06 5.5E-11 69.7 5.2 80 94-182 94-174 (263)
235 COG4262 Predicted spermidine s 98.2 5.1E-05 1.1E-09 66.6 13.5 118 92-219 287-407 (508)
236 TIGR01444 fkbM_fam methyltrans 98.2 5.3E-06 1.1E-10 64.3 6.9 56 97-160 1-56 (143)
237 COG3897 Predicted methyltransf 98.2 1.1E-05 2.3E-10 65.0 8.4 103 94-222 79-181 (218)
238 KOG1269 SAM-dependent methyltr 98.2 5.3E-06 1.2E-10 74.1 7.4 112 89-220 105-216 (364)
239 PF03059 NAS: Nicotianamine sy 98.2 3.9E-05 8.4E-10 65.9 12.2 108 96-220 122-231 (276)
240 PF13679 Methyltransf_32: Meth 98.1 1.3E-05 2.7E-10 62.4 8.0 54 93-146 24-77 (141)
241 PF05971 Methyltransf_10: Prot 98.1 1.8E-05 4E-10 68.6 9.5 84 95-186 103-190 (299)
242 COG0500 SmtA SAM-dependent met 98.1 6.2E-05 1.3E-09 57.6 11.8 106 98-222 52-158 (257)
243 PF09243 Rsm22: Mitochondrial 98.1 5.5E-05 1.2E-09 65.5 12.3 121 95-237 34-156 (274)
244 KOG1596 Fibrillarin and relate 98.1 3.3E-05 7.2E-10 64.1 9.9 115 88-226 150-268 (317)
245 COG1189 Predicted rRNA methyla 98.0 0.00017 3.8E-09 60.0 13.4 102 93-221 78-180 (245)
246 COG4076 Predicted RNA methylas 98.0 7.4E-06 1.6E-10 65.5 5.1 98 95-216 33-132 (252)
247 COG1352 CheR Methylase of chem 98.0 4.9E-05 1.1E-09 65.2 10.2 111 95-217 97-239 (268)
248 PF03141 Methyltransf_29: Puta 98.0 1.6E-05 3.5E-10 72.6 6.4 101 97-223 120-223 (506)
249 KOG1331 Predicted methyltransf 98.0 1.8E-05 3.9E-10 67.3 6.2 100 92-221 43-145 (293)
250 KOG2940 Predicted methyltransf 97.9 8.5E-06 1.8E-10 67.2 3.7 104 94-220 72-175 (325)
251 KOG2198 tRNA cytosine-5-methyl 97.9 0.00028 6.1E-09 62.3 13.1 137 80-223 139-300 (375)
252 PF02005 TRM: N2,N2-dimethylgu 97.9 0.00011 2.3E-09 66.4 10.6 106 94-220 49-155 (377)
253 PF07942 N2227: N2227-like pro 97.9 0.00018 3.8E-09 61.7 11.2 103 95-215 57-198 (270)
254 KOG0024 Sorbitol dehydrogenase 97.9 0.00012 2.6E-09 63.5 9.5 113 83-222 158-276 (354)
255 COG0286 HsdM Type I restrictio 97.8 0.00081 1.8E-08 62.9 15.2 126 93-223 185-330 (489)
256 PF04989 CmcI: Cephalosporin h 97.8 0.00014 3.1E-09 59.6 8.9 139 92-248 31-186 (206)
257 COG1064 AdhP Zn-dependent alco 97.8 0.0002 4.3E-09 63.2 9.9 101 89-222 161-262 (339)
258 PF11599 AviRa: RRNA methyltra 97.7 0.0013 2.7E-08 54.0 12.4 134 80-217 36-212 (246)
259 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.6 0.00027 5.8E-09 60.2 8.3 145 94-252 56-239 (256)
260 KOG3201 Uncharacterized conser 97.6 7.6E-05 1.7E-09 58.3 4.4 136 94-251 29-165 (201)
261 KOG3115 Methyltransferase-like 97.6 0.00019 4.1E-09 58.2 6.3 118 94-220 60-184 (249)
262 PF04445 SAM_MT: Putative SAM- 97.5 0.00026 5.5E-09 59.3 6.5 85 91-183 70-161 (234)
263 COG1867 TRM1 N2,N2-dimethylgua 97.5 0.0011 2.3E-08 58.7 10.5 103 95-220 53-155 (380)
264 PF04672 Methyltransf_19: S-ad 97.5 0.0018 4E-08 55.2 11.6 127 96-238 70-208 (267)
265 PRK09880 L-idonate 5-dehydroge 97.5 0.0014 3.1E-08 58.3 11.4 101 91-220 166-267 (343)
266 COG1063 Tdh Threonine dehydrog 97.5 0.001 2.3E-08 59.6 10.4 105 93-224 167-274 (350)
267 KOG3987 Uncharacterized conser 97.5 2.4E-05 5.2E-10 63.5 -0.3 93 95-218 113-206 (288)
268 PF01861 DUF43: Protein of unk 97.4 0.013 2.7E-07 49.3 15.5 124 94-241 44-170 (243)
269 KOG3178 Hydroxyindole-O-methyl 97.4 0.00083 1.8E-08 59.0 8.0 98 95-221 178-277 (342)
270 PF01555 N6_N4_Mtase: DNA meth 97.3 0.00076 1.6E-08 56.0 7.1 58 77-140 174-231 (231)
271 PRK11524 putative methyltransf 97.3 0.00096 2.1E-08 58.1 7.4 61 78-144 192-252 (284)
272 COG2384 Predicted SAM-dependen 97.3 0.019 4.1E-07 47.5 14.2 120 92-240 14-134 (226)
273 PRK13699 putative methylase; P 97.2 0.0015 3.3E-08 54.9 7.3 62 78-145 147-208 (227)
274 KOG1562 Spermidine synthase [A 97.1 0.0078 1.7E-07 51.8 11.3 117 93-219 120-236 (337)
275 KOG1253 tRNA methyltransferase 97.1 0.00071 1.5E-08 61.8 5.2 108 94-220 109-217 (525)
276 KOG2352 Predicted spermine/spe 97.1 0.0064 1.4E-07 55.8 11.2 129 78-220 31-162 (482)
277 PF11968 DUF3321: Putative met 97.1 0.0016 3.5E-08 53.6 6.5 119 96-251 53-180 (219)
278 PHA01634 hypothetical protein 97.0 0.0035 7.6E-08 47.2 7.2 48 94-146 28-75 (156)
279 KOG4058 Uncharacterized conser 97.0 0.01 2.2E-07 45.9 9.8 77 93-180 71-147 (199)
280 KOG1227 Putative methyltransfe 96.9 0.00042 9E-09 59.5 1.3 104 94-221 194-299 (351)
281 cd00315 Cyt_C5_DNA_methylase C 96.9 0.022 4.9E-07 49.3 12.0 132 97-247 2-138 (275)
282 cd08283 FDH_like_1 Glutathione 96.8 0.0099 2.2E-07 53.9 9.7 118 91-220 181-307 (386)
283 KOG1501 Arginine N-methyltrans 96.8 0.0027 5.9E-08 57.3 5.7 55 97-159 69-123 (636)
284 cd08230 glucose_DH Glucose deh 96.7 0.015 3.2E-07 52.0 10.2 97 92-220 170-270 (355)
285 KOG2671 Putative RNA methylase 96.7 0.0027 5.9E-08 55.6 5.1 120 91-220 205-355 (421)
286 cd08237 ribitol-5-phosphate_DH 96.7 0.015 3.3E-07 51.7 10.0 95 92-220 161-257 (341)
287 KOG2793 Putative N2,N2-dimethy 96.7 0.078 1.7E-06 45.0 13.5 138 95-252 87-228 (248)
288 PF00107 ADH_zinc_N: Zinc-bind 96.7 0.011 2.3E-07 44.7 7.7 88 104-222 1-92 (130)
289 PRK09424 pntA NAD(P) transhydr 96.6 0.021 4.5E-07 53.6 10.8 105 93-220 163-286 (509)
290 TIGR03366 HpnZ_proposed putati 96.6 0.03 6.5E-07 48.3 11.1 99 92-220 118-219 (280)
291 PF07091 FmrO: Ribosomal RNA m 96.6 0.034 7.3E-07 47.0 10.7 52 91-146 102-153 (251)
292 cd08281 liver_ADH_like1 Zinc-d 96.4 0.031 6.8E-07 50.3 10.5 100 90-220 187-291 (371)
293 PF05711 TylF: Macrocin-O-meth 96.4 0.11 2.4E-06 44.2 12.9 130 95-242 75-231 (248)
294 TIGR03451 mycoS_dep_FDH mycoth 96.4 0.034 7.4E-07 49.8 10.5 100 91-220 173-277 (358)
295 PF10354 DUF2431: Domain of un 96.3 0.022 4.9E-07 45.4 7.8 117 101-224 3-130 (166)
296 KOG2798 Putative trehalase [Ca 96.2 0.039 8.5E-07 48.0 9.2 107 95-216 151-293 (369)
297 TIGR00497 hsdM type I restrict 96.2 0.31 6.8E-06 45.9 16.0 125 94-222 217-358 (501)
298 TIGR02822 adh_fam_2 zinc-bindi 96.1 0.08 1.7E-06 46.9 10.9 94 90-220 161-255 (329)
299 COG5459 Predicted rRNA methyla 96.0 0.023 4.9E-07 50.2 7.0 123 95-232 114-237 (484)
300 PLN02740 Alcohol dehydrogenase 95.9 0.11 2.4E-06 46.9 11.5 101 90-221 194-302 (381)
301 cd08254 hydroxyacyl_CoA_DH 6-h 95.9 0.11 2.4E-06 45.6 11.2 100 91-220 162-264 (338)
302 PRK13699 putative methylase; P 95.9 0.045 9.8E-07 46.0 8.2 64 155-219 3-72 (227)
303 COG1062 AdhC Zn-dependent alco 95.9 0.093 2E-06 46.3 10.1 104 88-222 179-288 (366)
304 TIGR01202 bchC 2-desacetyl-2-h 95.8 0.091 2E-06 46.0 10.1 89 93-220 143-232 (308)
305 TIGR03201 dearomat_had 6-hydro 95.7 0.17 3.7E-06 45.1 11.5 46 90-140 162-208 (349)
306 cd08239 THR_DH_like L-threonin 95.7 0.18 3.9E-06 44.6 11.6 101 90-220 159-263 (339)
307 COG1565 Uncharacterized conser 95.7 0.19 4E-06 44.8 11.2 53 93-145 76-132 (370)
308 PLN02827 Alcohol dehydrogenase 95.7 0.13 2.8E-06 46.5 10.8 99 91-220 190-296 (378)
309 PRK10309 galactitol-1-phosphat 95.6 0.16 3.6E-06 45.0 11.2 100 91-220 157-261 (347)
310 PRK01747 mnmC bifunctional tRN 95.6 0.12 2.6E-06 50.5 10.8 113 96-216 59-203 (662)
311 cd08232 idonate-5-DH L-idonate 95.6 0.15 3.3E-06 44.9 10.7 97 94-219 165-262 (339)
312 COG3129 Predicted SAM-dependen 95.6 0.05 1.1E-06 45.3 6.8 83 94-183 78-163 (292)
313 PLN03154 putative allyl alcoho 95.4 0.23 5E-06 44.4 11.3 98 91-220 155-259 (348)
314 PF03141 Methyltransf_29: Puta 95.4 0.11 2.5E-06 48.0 9.0 143 92-266 361-506 (506)
315 KOG0022 Alcohol dehydrogenase, 95.3 0.26 5.7E-06 43.1 10.7 104 87-221 185-296 (375)
316 KOG1099 SAM-dependent methyltr 95.3 0.12 2.6E-06 43.1 8.1 125 94-239 41-182 (294)
317 PF07757 AdoMet_MTase: Predict 95.2 0.015 3.3E-07 42.5 2.4 32 94-131 58-89 (112)
318 PF00145 DNA_methylase: C-5 cy 95.1 0.1 2.2E-06 45.8 7.9 132 97-248 2-138 (335)
319 KOG2912 Predicted DNA methylas 95.1 0.093 2E-06 45.8 7.2 98 80-184 85-189 (419)
320 TIGR02825 B4_12hDH leukotriene 95.1 0.58 1.3E-05 41.0 12.7 98 90-219 134-237 (325)
321 cd08285 NADP_ADH NADP(H)-depen 95.0 0.37 8E-06 42.8 11.3 101 90-220 162-267 (351)
322 TIGR02819 fdhA_non_GSH formald 95.0 0.33 7.2E-06 44.2 11.2 116 90-221 181-301 (393)
323 KOG2352 Predicted spermine/spe 95.0 0.093 2E-06 48.3 7.3 119 93-222 294-419 (482)
324 cd05188 MDR Medium chain reduc 94.9 0.21 4.6E-06 42.0 9.2 100 92-220 132-233 (271)
325 COG3510 CmcI Cephalosporin hyd 94.9 1.6 3.4E-05 35.6 13.3 126 95-242 70-212 (237)
326 TIGR00675 dcm DNA-methyltransf 94.9 0.53 1.1E-05 41.6 11.8 71 98-186 1-72 (315)
327 COG4301 Uncharacterized conser 94.9 0.83 1.8E-05 38.7 12.0 115 92-219 76-193 (321)
328 KOG2078 tRNA modification enzy 94.8 0.033 7.2E-07 50.3 3.9 72 85-165 240-312 (495)
329 TIGR02818 adh_III_F_hyde S-(hy 94.8 0.21 4.5E-06 45.0 9.1 103 90-220 181-288 (368)
330 cd00401 AdoHcyase S-adenosyl-L 94.7 0.2 4.3E-06 45.9 8.8 89 93-220 200-290 (413)
331 KOG0822 Protein kinase inhibit 94.7 0.2 4.4E-06 46.6 8.7 106 97-220 370-479 (649)
332 cd08238 sorbose_phosphate_red 94.7 0.39 8.4E-06 43.9 10.7 105 91-218 172-287 (410)
333 cd08301 alcohol_DH_plants Plan 94.6 0.6 1.3E-05 41.8 11.8 100 90-220 183-290 (369)
334 PLN02586 probable cinnamyl alc 94.5 0.33 7.2E-06 43.5 9.9 97 92-220 181-279 (360)
335 KOG0023 Alcohol dehydrogenase, 94.5 0.43 9.4E-06 41.9 9.9 107 87-222 174-282 (360)
336 cd05278 FDH_like Formaldehyde 94.5 0.33 7.1E-06 42.9 9.7 98 91-218 164-266 (347)
337 cd08300 alcohol_DH_class_III c 94.5 0.5 1.1E-05 42.4 10.9 100 90-220 182-289 (368)
338 PRK11524 putative methyltransf 94.5 0.096 2.1E-06 45.5 6.0 67 152-219 7-80 (284)
339 COG0270 Dcm Site-specific DNA 94.4 0.38 8.1E-06 42.8 9.8 135 95-246 3-141 (328)
340 cd08277 liver_alcohol_DH_like 94.4 0.64 1.4E-05 41.7 11.4 101 91-220 181-287 (365)
341 cd08296 CAD_like Cinnamyl alco 94.4 0.53 1.1E-05 41.5 10.6 99 91-219 160-259 (333)
342 PTZ00357 methyltransferase; Pr 94.4 0.3 6.6E-06 47.0 9.2 107 97-214 703-830 (1072)
343 PLN02668 indole-3-acetate carb 94.3 0.7 1.5E-05 41.9 11.2 126 95-220 64-238 (386)
344 KOG2651 rRNA adenine N-6-methy 94.3 0.077 1.7E-06 47.3 5.0 43 94-141 153-195 (476)
345 cd08295 double_bond_reductase_ 94.3 0.49 1.1E-05 41.8 10.2 99 91-219 148-251 (338)
346 cd08293 PTGR2 Prostaglandin re 94.3 0.48 1E-05 41.8 10.2 97 92-219 150-254 (345)
347 cd08294 leukotriene_B4_DH_like 94.2 0.68 1.5E-05 40.5 11.0 96 91-219 140-241 (329)
348 COG0604 Qor NADPH:quinone redu 94.2 0.59 1.3E-05 41.5 10.5 104 90-222 138-244 (326)
349 KOG3924 Putative protein methy 94.2 0.33 7.2E-06 43.6 8.7 146 82-245 180-336 (419)
350 PLN02178 cinnamyl-alcohol dehy 94.1 0.66 1.4E-05 41.9 10.8 95 93-220 177-274 (375)
351 cd08245 CAD Cinnamyl alcohol d 94.0 1.1 2.5E-05 39.1 12.0 98 90-219 158-256 (330)
352 TIGR00561 pntA NAD(P) transhyd 93.8 0.28 6.2E-06 46.1 7.9 42 94-140 163-205 (511)
353 KOG1098 Putative SAM-dependent 93.7 0.09 1.9E-06 49.7 4.5 39 91-132 41-79 (780)
354 TIGR00936 ahcY adenosylhomocys 93.7 2.3 5.1E-05 38.9 13.4 89 93-220 193-283 (406)
355 cd08278 benzyl_alcohol_DH Benz 93.6 0.9 1.9E-05 40.7 10.8 98 91-219 183-285 (365)
356 cd08233 butanediol_DH_like (2R 93.5 0.79 1.7E-05 40.7 10.2 104 90-220 168-273 (351)
357 cd08261 Zn_ADH7 Alcohol dehydr 93.5 0.53 1.1E-05 41.5 9.0 102 90-219 155-258 (337)
358 PLN02514 cinnamyl-alcohol dehy 93.4 0.99 2.2E-05 40.4 10.6 96 93-220 179-276 (357)
359 PF02254 TrkA_N: TrkA-N domain 93.3 1.4 3E-05 32.3 9.7 93 103-220 4-97 (116)
360 PRK10083 putative oxidoreducta 93.3 0.93 2E-05 39.9 10.2 101 91-220 157-260 (339)
361 PRK10458 DNA cytosine methylas 93.2 0.97 2.1E-05 42.2 10.4 43 95-142 88-130 (467)
362 PF07279 DUF1442: Protein of u 93.2 1.3 2.8E-05 36.7 9.9 79 94-180 41-122 (218)
363 cd05285 sorbitol_DH Sorbitol d 93.2 1.3 2.9E-05 39.1 11.1 102 90-219 158-265 (343)
364 cd08255 2-desacetyl-2-hydroxye 93.2 0.81 1.8E-05 39.0 9.4 98 90-220 93-191 (277)
365 PF02737 3HCDH_N: 3-hydroxyacy 93.1 1 2.2E-05 36.3 9.3 98 97-218 1-113 (180)
366 PRK06940 short chain dehydroge 92.9 0.87 1.9E-05 39.1 9.1 112 96-217 3-123 (275)
367 cd08234 threonine_DH_like L-th 92.9 1.9 4.1E-05 37.7 11.5 102 90-220 155-258 (334)
368 COG2933 Predicted SAM-dependen 92.8 1.2 2.6E-05 38.1 9.4 72 90-181 207-278 (358)
369 PF02636 Methyltransf_28: Puta 92.7 0.2 4.3E-06 42.8 4.8 49 96-144 20-72 (252)
370 cd05279 Zn_ADH1 Liver alcohol 92.7 1.4 3.1E-05 39.5 10.6 101 91-219 180-285 (365)
371 COG0686 Ald Alanine dehydrogen 92.7 0.88 1.9E-05 39.9 8.6 97 95-216 168-265 (371)
372 COG0863 DNA modification methy 92.4 0.55 1.2E-05 40.7 7.4 62 78-145 206-267 (302)
373 cd08231 MDR_TM0436_like Hypoth 92.4 1.7 3.6E-05 38.8 10.6 99 93-219 176-280 (361)
374 PF03492 Methyltransf_7: SAM d 92.3 1.2 2.6E-05 39.7 9.5 128 94-221 16-185 (334)
375 PRK07454 short chain dehydroge 91.9 1.3 2.9E-05 36.8 9.0 83 94-184 5-94 (241)
376 PRK07523 gluconate 5-dehydroge 91.8 2.1 4.6E-05 36.0 10.2 83 94-184 9-98 (255)
377 COG1568 Predicted methyltransf 91.8 2.4 5.3E-05 36.6 10.0 104 95-220 153-261 (354)
378 PRK07533 enoyl-(acyl carrier p 91.6 1.5 3.3E-05 37.1 9.1 118 94-219 9-148 (258)
379 PRK05476 S-adenosyl-L-homocyst 91.5 3.7 8E-05 37.9 11.8 88 94-220 211-300 (425)
380 cd08236 sugar_DH NAD(P)-depend 91.4 1.9 4E-05 38.0 9.8 99 91-219 156-258 (343)
381 KOG1201 Hydroxysteroid 17-beta 91.4 1.7 3.7E-05 37.8 8.9 82 94-187 37-128 (300)
382 TIGR00518 alaDH alanine dehydr 91.1 1.3 2.9E-05 40.0 8.5 100 94-218 166-266 (370)
383 cd08242 MDR_like Medium chain 91.0 3.3 7.2E-05 36.0 10.9 92 91-218 152-244 (319)
384 cd08265 Zn_ADH3 Alcohol dehydr 91.0 2 4.4E-05 38.7 9.7 102 91-219 200-307 (384)
385 cd08286 FDH_like_ADH2 formalde 90.9 3.4 7.3E-05 36.4 10.9 102 91-219 163-266 (345)
386 cd08291 ETR_like_1 2-enoyl thi 90.8 2.7 5.8E-05 36.8 10.1 95 94-220 142-243 (324)
387 cd05281 TDH Threonine dehydrog 90.8 2.7 5.9E-05 37.0 10.2 100 92-219 161-262 (341)
388 PRK07576 short chain dehydroge 90.7 4.1 9E-05 34.5 10.9 82 94-183 8-96 (264)
389 PRK07326 short chain dehydroge 90.7 1.9 4.1E-05 35.7 8.6 81 94-183 5-92 (237)
390 PRK07806 short chain dehydroge 90.6 8.8 0.00019 31.9 12.7 116 95-218 6-133 (248)
391 PRK09260 3-hydroxybutyryl-CoA 90.6 1.9 4E-05 37.5 8.8 98 97-217 3-115 (288)
392 PRK05786 fabG 3-ketoacyl-(acyl 90.6 3 6.6E-05 34.4 9.8 118 94-220 4-136 (238)
393 PF03269 DUF268: Caenorhabditi 90.3 1 2.3E-05 35.6 6.1 26 198-223 90-115 (177)
394 KOG2920 Predicted methyltransf 90.3 0.24 5.2E-06 42.6 2.8 39 93-136 115-153 (282)
395 PF03721 UDPG_MGDP_dh_N: UDP-g 90.2 2.9 6.4E-05 33.8 9.0 109 97-218 2-119 (185)
396 cd08240 6_hydroxyhexanoate_dh_ 90.1 2.2 4.8E-05 37.7 9.1 96 93-219 174-274 (350)
397 TIGR00692 tdh L-threonine 3-de 90.1 3 6.4E-05 36.8 9.8 100 92-220 159-262 (340)
398 cd08263 Zn_ADH10 Alcohol dehyd 90.0 3.4 7.3E-05 36.9 10.2 98 92-219 185-287 (367)
399 PRK05396 tdh L-threonine 3-deh 89.9 2.4 5.3E-05 37.3 9.1 100 93-220 162-264 (341)
400 cd05283 CAD1 Cinnamyl alcohol 89.9 5.3 0.00012 35.2 11.2 97 91-219 166-263 (337)
401 cd08279 Zn_ADH_class_III Class 89.9 4.2 9E-05 36.3 10.6 99 91-219 179-282 (363)
402 PRK05854 short chain dehydroge 89.8 6.4 0.00014 34.5 11.5 84 95-184 14-104 (313)
403 cd08246 crotonyl_coA_red croto 89.6 4.4 9.6E-05 36.6 10.7 45 91-140 190-236 (393)
404 PRK07066 3-hydroxybutyryl-CoA 89.6 2.7 5.9E-05 37.2 9.0 97 96-215 8-115 (321)
405 PRK07666 fabG 3-ketoacyl-(acyl 89.5 6.6 0.00014 32.5 11.0 82 95-184 7-95 (239)
406 KOG2360 Proliferation-associat 89.5 0.79 1.7E-05 41.1 5.4 82 93-182 212-293 (413)
407 PRK08415 enoyl-(acyl carrier p 89.5 3.4 7.4E-05 35.5 9.4 118 94-219 4-143 (274)
408 PRK08293 3-hydroxybutyryl-CoA 89.5 3.8 8.3E-05 35.5 9.8 97 96-215 4-116 (287)
409 PRK08594 enoyl-(acyl carrier p 89.4 6.4 0.00014 33.3 11.0 117 94-219 6-147 (257)
410 cd08287 FDH_like_ADH3 formalde 89.3 6.4 0.00014 34.6 11.3 100 91-220 165-269 (345)
411 KOG2782 Putative SAM dependent 89.2 0.19 4.1E-06 41.6 1.3 84 92-183 41-128 (303)
412 cd08298 CAD2 Cinnamyl alcohol 89.2 8.1 0.00017 33.7 11.8 92 91-219 164-256 (329)
413 COG2961 ComJ Protein involved 89.2 13 0.00028 31.7 12.8 128 92-245 87-215 (279)
414 PLN03209 translocon at the inn 89.2 3.3 7.2E-05 39.6 9.7 90 92-184 77-170 (576)
415 PRK08306 dipicolinate synthase 89.1 3.8 8.3E-05 35.8 9.5 89 94-218 151-240 (296)
416 PRK00066 ldh L-lactate dehydro 89.0 5.5 0.00012 35.2 10.5 116 93-221 4-124 (315)
417 PLN02702 L-idonate 5-dehydroge 89.0 3.8 8.3E-05 36.5 9.7 102 91-219 178-285 (364)
418 PF05206 TRM13: Methyltransfer 88.8 1.2 2.6E-05 38.2 6.0 43 91-133 15-58 (259)
419 PRK07984 enoyl-(acyl carrier p 88.8 6.4 0.00014 33.5 10.6 85 94-186 5-97 (262)
420 PRK07819 3-hydroxybutyryl-CoA 88.6 2.9 6.3E-05 36.3 8.4 97 96-216 6-118 (286)
421 PRK08589 short chain dehydroge 88.6 9.2 0.0002 32.5 11.5 83 94-185 5-94 (272)
422 cd08274 MDR9 Medium chain dehy 88.6 7.7 0.00017 34.1 11.4 96 91-218 174-272 (350)
423 PRK06124 gluconate 5-dehydroge 88.5 8.9 0.00019 32.1 11.3 83 94-184 10-99 (256)
424 cd05286 QOR2 Quinone oxidoredu 88.5 9.1 0.0002 32.6 11.5 97 91-219 133-235 (320)
425 PRK07904 short chain dehydroge 88.3 5 0.00011 33.9 9.6 86 92-184 5-98 (253)
426 PRK06701 short chain dehydroge 88.2 8.7 0.00019 33.2 11.2 118 94-219 45-181 (290)
427 PRK09422 ethanol-active dehydr 88.2 7.9 0.00017 33.9 11.1 98 90-219 158-261 (338)
428 cd08256 Zn_ADH2 Alcohol dehydr 88.1 9.3 0.0002 33.8 11.6 99 91-219 171-274 (350)
429 PF02826 2-Hacid_dh_C: D-isome 88.0 3.1 6.7E-05 33.3 7.7 88 94-215 35-123 (178)
430 cd05284 arabinose_DH_like D-ar 88.0 6.7 0.00014 34.4 10.5 98 92-219 165-266 (340)
431 PF05050 Methyltransf_21: Meth 88.0 1.6 3.5E-05 33.9 5.9 39 100-141 1-42 (167)
432 cd08284 FDH_like_2 Glutathione 88.0 7.4 0.00016 34.1 10.8 98 91-219 164-266 (344)
433 PRK07774 short chain dehydroge 88.0 7.3 0.00016 32.4 10.3 84 94-185 5-95 (250)
434 cd08243 quinone_oxidoreductase 87.9 7.8 0.00017 33.3 10.8 96 92-219 140-238 (320)
435 cd05288 PGDH Prostaglandin deh 87.9 5.4 0.00012 34.7 9.8 97 91-219 142-244 (329)
436 cd08262 Zn_ADH8 Alcohol dehydr 87.8 7 0.00015 34.3 10.6 101 90-220 157-265 (341)
437 PRK06079 enoyl-(acyl carrier p 87.8 12 0.00027 31.3 11.7 116 94-219 6-143 (252)
438 PRK08159 enoyl-(acyl carrier p 87.8 4.2 9E-05 34.8 8.8 118 94-219 9-148 (272)
439 PRK06125 short chain dehydroge 87.6 3.5 7.6E-05 34.7 8.2 84 95-185 7-93 (259)
440 PLN02494 adenosylhomocysteinas 87.6 2.9 6.3E-05 39.0 8.0 89 93-220 252-342 (477)
441 PRK07231 fabG 3-ketoacyl-(acyl 87.6 12 0.00025 31.1 11.4 82 95-185 5-93 (251)
442 PF01555 N6_N4_Mtase: DNA meth 87.5 0.68 1.5E-05 38.1 3.7 47 174-220 1-57 (231)
443 cd08269 Zn_ADH9 Alcohol dehydr 87.3 12 0.00027 32.0 11.7 99 90-219 125-229 (312)
444 cd08241 QOR1 Quinone oxidoredu 87.3 5.6 0.00012 34.0 9.5 99 91-219 136-238 (323)
445 KOG1205 Predicted dehydrogenas 87.2 7.8 0.00017 33.7 10.0 86 94-185 11-103 (282)
446 PF06859 Bin3: Bicoid-interact 87.2 0.67 1.4E-05 34.1 2.9 23 196-218 21-43 (110)
447 PRK08251 short chain dehydroge 87.2 8.9 0.00019 31.9 10.4 84 95-184 2-92 (248)
448 cd05293 LDH_1 A subgroup of L- 87.2 8.8 0.00019 33.9 10.6 115 94-221 2-122 (312)
449 PRK07530 3-hydroxybutyryl-CoA 87.1 6.9 0.00015 33.9 9.9 97 96-216 5-116 (292)
450 PRK08339 short chain dehydroge 86.8 6.3 0.00014 33.5 9.4 83 94-183 7-95 (263)
451 PRK08643 acetoin reductase; Va 86.7 11 0.00023 31.6 10.7 83 95-185 2-91 (256)
452 PRK05867 short chain dehydroge 86.7 5.8 0.00013 33.2 9.0 83 94-184 8-97 (253)
453 PRK06035 3-hydroxyacyl-CoA deh 86.7 5.6 0.00012 34.5 9.1 42 96-143 4-47 (291)
454 cd08292 ETR_like_2 2-enoyl thi 86.7 14 0.00029 32.0 11.6 98 90-219 135-238 (324)
455 PRK06197 short chain dehydroge 86.5 14 0.00031 31.9 11.6 85 94-184 15-106 (306)
456 PRK08945 putative oxoacyl-(acy 86.5 5.5 0.00012 33.2 8.7 85 93-184 10-103 (247)
457 cd05289 MDR_like_2 alcohol deh 86.4 11 0.00025 31.9 10.9 95 92-219 142-238 (309)
458 PRK07035 short chain dehydroge 86.2 9.2 0.0002 31.9 10.0 83 95-185 8-97 (252)
459 cd08260 Zn_ADH6 Alcohol dehydr 86.1 6.3 0.00014 34.7 9.3 97 91-219 162-264 (345)
460 cd08235 iditol_2_DH_like L-idi 86.1 9.9 0.00021 33.3 10.5 98 91-219 162-265 (343)
461 PRK06200 2,3-dihydroxy-2,3-dih 86.0 8.5 0.00018 32.4 9.7 80 94-184 5-91 (263)
462 cd08289 MDR_yhfp_like Yhfp put 85.8 10 0.00023 32.8 10.5 96 94-220 146-244 (326)
463 PRK06113 7-alpha-hydroxysteroi 85.7 15 0.00032 30.8 11.0 83 94-184 10-99 (255)
464 cd08282 PFDH_like Pseudomonas 85.6 9.3 0.0002 34.3 10.2 108 91-219 173-285 (375)
465 PRK07109 short chain dehydroge 85.5 12 0.00027 33.0 10.9 82 95-184 8-96 (334)
466 PF00056 Ldh_1_N: lactate/mala 85.5 14 0.00031 28.3 10.1 112 97-220 2-119 (141)
467 COG1748 LYS9 Saccharopine dehy 85.3 3.5 7.7E-05 37.5 7.2 73 96-183 2-78 (389)
468 PRK13771 putative alcohol dehy 85.3 6.4 0.00014 34.4 8.9 96 91-220 159-256 (334)
469 PRK06172 short chain dehydroge 85.3 5.2 0.00011 33.5 8.0 82 95-184 7-95 (253)
470 KOG1197 Predicted quinone oxid 85.2 14 0.0003 31.8 10.1 96 91-217 143-243 (336)
471 TIGR02437 FadB fatty oxidation 85.2 5.2 0.00011 39.5 8.9 98 96-217 314-426 (714)
472 PRK07478 short chain dehydroge 85.0 11 0.00024 31.5 9.9 82 95-184 6-94 (254)
473 PRK08213 gluconate 5-dehydroge 85.0 4.4 9.6E-05 34.1 7.5 82 94-183 11-99 (259)
474 PRK05808 3-hydroxybutyryl-CoA 85.0 9.9 0.00021 32.8 9.7 95 97-215 5-114 (282)
475 PRK07063 short chain dehydroge 84.8 17 0.00037 30.4 11.0 85 94-184 6-97 (260)
476 PRK05565 fabG 3-ketoacyl-(acyl 84.8 9 0.00019 31.6 9.2 83 95-185 5-95 (247)
477 PRK08324 short chain dehydroge 84.8 9.8 0.00021 37.4 10.6 117 94-219 421-557 (681)
478 PRK06914 short chain dehydroge 84.7 23 0.00049 30.0 11.9 84 95-184 3-92 (280)
479 KOG1198 Zinc-binding oxidoredu 84.7 16 0.00034 32.8 11.0 77 91-182 154-234 (347)
480 TIGR02441 fa_ox_alpha_mit fatt 84.6 4.3 9.4E-05 40.2 8.1 98 96-217 336-448 (737)
481 PRK07062 short chain dehydroge 84.5 7.8 0.00017 32.6 8.8 85 94-184 7-98 (265)
482 PF00106 adh_short: short chai 84.4 13 0.00027 28.7 9.4 82 97-185 2-92 (167)
483 PRK07097 gluconate 5-dehydroge 84.4 23 0.0005 29.8 11.7 84 94-185 9-99 (265)
484 PLN02545 3-hydroxybutyryl-CoA 84.4 8.1 0.00018 33.5 9.0 97 96-216 5-116 (295)
485 cd08264 Zn_ADH_like2 Alcohol d 84.3 7.7 0.00017 33.7 8.9 92 90-219 158-253 (325)
486 PRK08703 short chain dehydroge 84.3 6.6 0.00014 32.5 8.1 48 94-144 5-52 (239)
487 PRK10754 quinone oxidoreductas 84.2 15 0.00033 31.8 10.8 97 91-219 137-239 (327)
488 cd08266 Zn_ADH_like1 Alcohol d 84.2 11 0.00025 32.5 10.0 100 91-219 163-265 (342)
489 cd08258 Zn_ADH4 Alcohol dehydr 84.2 15 0.00032 31.9 10.6 102 91-221 161-266 (306)
490 PLN02989 cinnamyl-alcohol dehy 84.2 5.6 0.00012 34.8 8.0 81 94-183 4-87 (325)
491 PRK03659 glutathione-regulated 84.1 10 0.00022 36.7 10.3 98 96-220 401-499 (601)
492 PRK11064 wecC UDP-N-acetyl-D-m 84.1 16 0.00035 33.6 11.1 39 96-138 4-42 (415)
493 PRK12823 benD 1,6-dihydroxycyc 84.1 23 0.0005 29.6 11.5 80 95-183 8-94 (260)
494 PRK07889 enoyl-(acyl carrier p 84.0 5.8 0.00013 33.5 7.8 117 94-220 6-146 (256)
495 PRK07417 arogenate dehydrogena 84.0 7.6 0.00017 33.5 8.6 40 97-140 2-41 (279)
496 PRK07102 short chain dehydroge 84.0 14 0.00031 30.6 10.1 82 96-184 2-87 (243)
497 PRK12481 2-deoxy-D-gluconate 3 84.0 10 0.00022 31.8 9.2 82 94-185 7-95 (251)
498 PRK12939 short chain dehydroge 83.9 13 0.00028 30.8 9.8 83 94-184 6-95 (250)
499 cd08290 ETR 2-enoyl thioester 83.9 11 0.00023 33.1 9.7 100 91-219 143-251 (341)
500 TIGR01963 PHB_DH 3-hydroxybuty 83.9 5.8 0.00013 33.0 7.7 81 96-184 2-89 (255)
No 1
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=99.92 E-value=2.3e-24 Score=164.66 Aligned_cols=139 Identities=47% Similarity=0.738 Sum_probs=115.2
Q ss_pred EEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHH
Q 041272 124 CVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALE 203 (267)
Q Consensus 124 ~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~ 203 (267)
+|+|+|+.+++++.+++++++.+ ...++++++++++.+....++ .++|++++|+||||.+|+.+.+.++....+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~---~~~~v~li~~sHe~l~~~i~~-~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG---LEDRVTLILDSHENLDEYIPE-GPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT----GSGEEEEES-GGGGGGT--S---EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC---CCCcEEEEECCHHHHHhhCcc-CCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 69999999999999999999987 467899999999999998866 57999999999999999999999999999999
Q ss_pred HHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEeeecCC-CCceEEEeec
Q 041272 204 AAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP-LAPVLVFLFK 266 (267)
Q Consensus 204 ~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~p~~~~~~k 266 (267)
.+.++|+|||++.+++|+||+++.+|.+.+.+|++.++++.|.+.++.++|+. .||++++++|
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~~~pp~l~~ieK 140 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQKNNPPLLVIIEK 140 (140)
T ss_dssp HHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-SS---EEEEEEE
T ss_pred HHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCCCCCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999996 5777777765
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.82 E-value=5.5e-19 Score=147.71 Aligned_cols=114 Identities=25% Similarity=0.364 Sum_probs=96.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.+|.+|||+|||||.++..+++..+. ++|+|+|+|+.|++.|++++.+.+ ..+++|+.++++.|+ .+
T Consensus 48 ~~~~g~~vLDva~GTGd~a~~~~k~~g~----g~v~~~D~s~~ML~~a~~k~~~~~----~~~i~fv~~dAe~LP---f~ 116 (238)
T COG2226 48 GIKPGDKVLDVACGTGDMALLLAKSVGT----GEVVGLDISESMLEVAREKLKKKG----VQNVEFVVGDAENLP---FP 116 (238)
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCC----ceEEEEECCHHHHHHHHHHhhccC----ccceEEEEechhhCC---CC
Confidence 3457999999999999999999999864 899999999999999999999876 345999987775554 56
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
+.+||++...+ .+...++.+++|++++|+|||||++++..+..+.
T Consensus 117 D~sFD~vt~~f---------glrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 117 DNSFDAVTISF---------GLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred CCccCEEEeee---------hhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 77999998885 3444567789999999999999999998876544
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.78 E-value=1.9e-18 Score=145.45 Aligned_cols=115 Identities=23% Similarity=0.347 Sum_probs=84.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
...++.+|||+|||||..+..+++.+++ .++|+|+|+|++|++.|+++++..+ ..++++++++.+++. .+
T Consensus 44 ~~~~g~~vLDv~~GtG~~~~~l~~~~~~---~~~v~~vD~s~~ML~~a~~k~~~~~----~~~i~~v~~da~~lp---~~ 113 (233)
T PF01209_consen 44 GLRPGDRVLDVACGTGDVTRELARRVGP---NGKVVGVDISPGMLEVARKKLKREG----LQNIEFVQGDAEDLP---FP 113 (233)
T ss_dssp T--S--EEEEET-TTSHHHHHHGGGSS------EEEEEES-HHHHHHHHHHHHHTT------SEEEEE-BTTB-----S-
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHCCC---ccEEEEecCCHHHHHHHHHHHHhhC----CCCeeEEEcCHHHhc---CC
Confidence 3568899999999999999999998764 6899999999999999999998876 459999997776553 44
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
+.+||.|++.++ ++..++..+++++++|+|||||++++.++....
T Consensus 114 d~sfD~v~~~fg---------lrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 114 DNSFDAVTCSFG---------LRNFPDRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp TT-EEEEEEES----------GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred CCceeEEEHHhh---------HHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 678999998853 334455678999999999999999999885543
No 4
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.77 E-value=7.8e-18 Score=125.80 Aligned_cols=111 Identities=19% Similarity=0.307 Sum_probs=85.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
|+.+|||+|||+|.++..+++..+ +.+|+|+|+|+++++.|++++.+.+ ...++++++++. .... .....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~-~~~~--~~~~~ 70 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP----GARVVGVDISPEMLEIARERAAEEG---LSDRITFVQGDA-EFDP--DFLEP 70 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT----TSEEEEEESSHHHHHHHHHHHHHTT---TTTTEEEEESCC-HGGT--TTSSC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECcc-ccCc--ccCCC
Confidence 578999999999999999999543 5899999999999999999995554 468999998776 2221 12236
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
||+|+.+. . . .......+...++++++.+.|+|||++++..
T Consensus 71 ~D~v~~~~-~---~-~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 71 FDLVICSG-F---T-LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEEEECS-G---S-GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEECC-C---c-cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999984 1 0 0001112667899999999999999999865
No 5
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.76 E-value=1.1e-17 Score=132.12 Aligned_cols=111 Identities=15% Similarity=0.247 Sum_probs=92.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+.+.+|||+|||+|.++..+++..+ |+++++|+|+|++|++.|+++++..+ ..+++|++++..++... .+ .
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~---~~~~i~gvD~s~~~i~~a~~~~~~~~----~~ni~~~~~d~~~l~~~-~~-~ 72 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELN---PGAKIIGVDISEEMIEYAKKRAKELG----LDNIEFIQGDIEDLPQE-LE-E 72 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHST---TTSEEEEEESSHHHHHHHHHHHHHTT----STTEEEEESBTTCGCGC-SS-T
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcC---CCCEEEEEECcHHHHHHhhccccccc----ccccceEEeehhccccc-cC-C
Confidence 4578999999999999999996543 36899999999999999999999887 56999999888775433 22 5
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.||+|+++. +.++..+...+++++.+.||+||.+++..+.
T Consensus 73 ~~D~I~~~~---------~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 73 KFDIIISNG---------VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TEEEEEEES---------TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CeeEEEEcC---------chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 799999993 4466677789999999999999999998875
No 6
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.76 E-value=6.4e-17 Score=131.67 Aligned_cols=147 Identities=13% Similarity=0.091 Sum_probs=103.8
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||+|||+|..+..+++..+ +++|+|+|++++|++.|+++++.++ ..+++++.++..++..
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~----~~~V~giD~s~~~l~~A~~~~~~~~----l~~i~~~~~d~~~~~~--- 109 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARP----ELKVTLVDSLGKKIAFLREVAAELG----LKNVTVVHGRAEEFGQ--- 109 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCC----CCeEEEEeCcHHHHHHHHHHHHHcC----CCCEEEEeccHhhCCC---
Confidence 3456789999999999999999998643 5899999999999999999999987 4569999877655432
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
+.+||+|+++. ......++++++++|||||++++..... ....+......+.-.-..++.
T Consensus 110 -~~~fDlV~~~~-------------~~~~~~~l~~~~~~LkpGG~lv~~~~~~------~~~~l~~~~~~~~~~~~~~~~ 169 (187)
T PRK00107 110 -EEKFDVVTSRA-------------VASLSDLVELCLPLLKPGGRFLALKGRD------PEEEIAELPKALGGKVEEVIE 169 (187)
T ss_pred -CCCccEEEEcc-------------ccCHHHHHHHHHHhcCCCeEEEEEeCCC------hHHHHHHHHHhcCceEeeeEE
Confidence 44799999872 1234689999999999999998876521 122233333332211122233
Q ss_pred EeeecCCCCceEEEeecC
Q 041272 250 FQMLNRPLAPVLVFLFKR 267 (267)
Q Consensus 250 ~~~~~~~~~p~~~~~~k~ 267 (267)
+.-..-..+|-+++++|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 170 LTLPGLDGERHLVIIRKK 187 (187)
T ss_pred EecCCCCCcEEEEEEecC
Confidence 333222457778888875
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.75 E-value=5.5e-17 Score=139.24 Aligned_cols=117 Identities=20% Similarity=0.279 Sum_probs=90.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..+++..++ .++|+|+|+|++|++.|+++...... ....++++++++..++ ..+
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~---~~~V~gvD~S~~ml~~A~~r~~~~~~-~~~~~i~~~~~d~~~l---p~~ 142 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGS---DGKVMGLDFSSEQLAVAASRQELKAK-SCYKNIEWIEGDATDL---PFD 142 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHhhhhhh-ccCCCeEEEEcccccC---CCC
Confidence 3567899999999999999999988653 47999999999999999987642110 0135788888766443 344
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
+.+||+|+++. .+++.+++.+++++++|+|||||++++.++...
T Consensus 143 ~~sfD~V~~~~---------~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 143 DCYFDAITMGY---------GLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred CCCEeEEEEec---------ccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 56899999874 344456678999999999999999999887543
No 8
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.1e-17 Score=134.41 Aligned_cols=128 Identities=17% Similarity=0.171 Sum_probs=97.1
Q ss_pred cccCCCCC--CCCCCcchhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 63 NCTPLPLC--KDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 63 ~~~~~~~~--~d~~~~~~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
++.+.+.+ .+... ....-.+.++....++++++|||||||+|+.+..||+.. .+|++||+.++..+.|++
T Consensus 41 AY~d~~lpi~~gqti--s~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~------~~V~siEr~~~L~~~A~~ 112 (209)
T COG2518 41 AYEDRALPIGCGQTI--SAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV------GRVVSIERIEELAEQARR 112 (209)
T ss_pred cccCCcccCCCCcee--cCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh------CeEEEEEEcHHHHHHHHH
Confidence 44454333 33333 334445555555678999999999999999999999985 589999999999999999
Q ss_pred HHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 141 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|++..+ ..||.++++|. ....++..+||.|+..... ..+-+.+.+.||+||++++-.-
T Consensus 113 ~L~~lg----~~nV~v~~gDG---~~G~~~~aPyD~I~Vtaaa---------------~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 113 NLETLG----YENVTVRHGDG---SKGWPEEAPYDRIIVTAAA---------------PEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred HHHHcC----CCceEEEECCc---ccCCCCCCCcCEEEEeecc---------------CCCCHHHHHhcccCCEEEEEEc
Confidence 999988 66799998665 5555566789999888432 1233567888999999987654
No 9
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.74 E-value=5.8e-17 Score=134.33 Aligned_cols=106 Identities=19% Similarity=0.277 Sum_probs=82.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++++|||+|||+|+.+..+++.++. .++|+|+|+++++++.|+++++.++ ...+++++.++..+. ++.
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~---~g~V~~iD~~~~~~~~a~~~l~~~~---~~~~v~~~~~d~~~~---~~~ 139 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIER---RGKVYTVEIVKELAIYAAQNIERLG---YWGVVEVYHGDGKRG---LEK 139 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCC---CCEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEECCcccC---Ccc
Confidence 4678899999999999999999998754 4799999999999999999998876 334688888665432 233
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+||.|+++... ..+.+++.+.|||||++++...
T Consensus 140 ~~~fD~Ii~~~~~---------------~~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 140 HAPFDAIIVTAAA---------------STIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred CCCccEEEEccCc---------------chhhHHHHHhcCcCcEEEEEEc
Confidence 4579999988421 1334578899999999977553
No 10
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.74 E-value=6.1e-17 Score=135.46 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=120.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
....+|||+|||+|.+++.+|++.. .++++|||+++++.+.|+++.+.++ +..+++++++|..++.......
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~----~a~I~~VEiq~~~a~~A~~nv~ln~---l~~ri~v~~~Di~~~~~~~~~~- 114 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTE----KAKIVGVEIQEEAAEMAQRNVALNP---LEERIQVIEADIKEFLKALVFA- 114 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCC----CCcEEEEEeCHHHHHHHHHHHHhCc---chhceeEehhhHHHhhhccccc-
Confidence 3478999999999999999999864 3899999999999999999999987 6899999998888877765443
Q ss_pred cEEEEEEeCCCCCCCCC-cee-------e-chhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCC
Q 041272 173 AVRLVAFNLGYLPGGDK-SVI-------T-TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVD 243 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~-~~~-------~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 243 (267)
+||+|++|+||....+. .-. | ..-..+++++.+.++|||||.++++.. .+.+.+++..+...
T Consensus 115 ~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r---------~erl~ei~~~l~~~ 185 (248)
T COG4123 115 SFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR---------PERLAEIIELLKSY 185 (248)
T ss_pred ccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec---------HHHHHHHHHHHHhc
Confidence 79999999999776654 100 1 112357899999999999999988765 24455566666666
Q ss_pred ceEEEEEeeecC--CCCceEEEe
Q 041272 244 DWICCKFQMLNR--PLAPVLVFL 264 (267)
Q Consensus 244 ~~~~~~~~~~~~--~~~p~~~~~ 264 (267)
.|...+..++.. .+.+-.+++
T Consensus 186 ~~~~k~i~~V~p~~~k~A~~vLv 208 (248)
T COG4123 186 NLEPKRIQFVYPKIGKAANRVLV 208 (248)
T ss_pred CCCceEEEEecCCCCCcceEEEE
Confidence 677777777665 355555544
No 11
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.73 E-value=8.3e-17 Score=134.02 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=85.3
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
..+....++++++|||+|||+|+.+..+++.++. +++|+++|+++++++.|+++++..+ ..+++++.++....
T Consensus 67 ~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~---~~~V~~vE~~~~~~~~a~~~l~~~g----~~~v~~~~gd~~~~ 139 (212)
T PRK13942 67 IMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGK---SGKVVTIERIPELAEKAKKTLKKLG----YDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCC---CCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcccC
Confidence 3333345788999999999999999999998754 5799999999999999999999877 56899998775432
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..+..+||.|+++... ..+.+.+.+.|||||++++..
T Consensus 140 ---~~~~~~fD~I~~~~~~---------------~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 ---YEENAPYDRIYVTAAG---------------PDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ---CCcCCCcCEEEECCCc---------------ccchHHHHHhhCCCcEEEEEE
Confidence 2334579999887321 133456778899999998754
No 12
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.72 E-value=2.6e-17 Score=135.68 Aligned_cols=106 Identities=15% Similarity=0.254 Sum_probs=91.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
+|.+|||+|||.|.++..||+. ++.|+|+|+++.+|+.|+.++.+.+ -++++.+...+++.. ...+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~------Ga~VtgiD~se~~I~~Ak~ha~e~g-----v~i~y~~~~~edl~~---~~~~ 124 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL------GASVTGIDASEKPIEVAKLHALESG-----VNIDYRQATVEDLAS---AGGQ 124 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC------CCeeEEecCChHHHHHHHHhhhhcc-----ccccchhhhHHHHHh---cCCC
Confidence 7899999999999999999998 6899999999999999999999877 346666655555543 3368
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
||+|++. .++.|.+++..+++.+.+++||||.+++++...
T Consensus 125 FDvV~cm---------EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 125 FDVVTCM---------EVLEHVPDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred ccEEEEh---------hHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 9999998 788899999999999999999999999988743
No 13
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=1.2e-16 Score=136.05 Aligned_cols=139 Identities=16% Similarity=0.120 Sum_probs=104.9
Q ss_pred cccccCCCCCCCCCCcchhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 61 TNNCTPLPLCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 61 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
++.|..++.+.. .+...+....-+.+.+..|++|++|||||||.|.+++.+|++. +.+|+|+++|+++.+.+++
T Consensus 40 ~Yscayf~~~~~-tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-----~v~V~GvTlS~~Q~~~~~~ 113 (283)
T COG2230 40 TYSCAYFEDPDM-TLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-----GVTVVGVTLSEEQLAYAEK 113 (283)
T ss_pred ceeeEEeCCCCC-ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-----CCEEEEeeCCHHHHHHHHH
Confidence 445555544332 3433444445555556679999999999999999999999997 4799999999999999999
Q ss_pred HHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEE
Q 041272 141 LLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 141 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
++++.| ...+++++..|..++. ..||.|++- .... ..+....+++.+.+.|+|||.+++.
T Consensus 114 r~~~~g---l~~~v~v~l~d~rd~~------e~fDrIvSv---------gmfEhvg~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 114 RIAARG---LEDNVEVRLQDYRDFE------EPFDRIVSV---------GMFEHVGKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred HHHHcC---CCcccEEEeccccccc------cccceeeeh---------hhHHHhCcccHHHHHHHHHhhcCCCceEEEE
Confidence 999988 4568888765544443 249999886 2332 2455789999999999999999988
Q ss_pred EecCC
Q 041272 219 VYVGH 223 (267)
Q Consensus 219 ~~~~~ 223 (267)
+....
T Consensus 176 ~I~~~ 180 (283)
T COG2230 176 SITGP 180 (283)
T ss_pred EecCC
Confidence 76543
No 14
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.72 E-value=3.4e-17 Score=135.38 Aligned_cols=117 Identities=19% Similarity=0.206 Sum_probs=87.4
Q ss_pred hHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe
Q 041272 79 LITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158 (267)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~ 158 (267)
.+.-.+..+....+++|++|||||||+|+.+..|+..++. .++|++||+++..++.|++++...+ ..|+.++.
T Consensus 57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~---~g~Vv~vE~~~~l~~~A~~~l~~~~----~~nv~~~~ 129 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGP---VGRVVSVERDPELAERARRNLARLG----IDNVEVVV 129 (209)
T ss_dssp -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHST---TEEEEEEESBHHHHHHHHHHHHHHT----THSEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCc---cceEEEECccHHHHHHHHHHHHHhc----cCceeEEE
Confidence 3444555555556899999999999999999999999875 5789999999999999999999987 56899998
Q ss_pred cChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 159 ~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+|.. ...+...+||.|+.+... .++-..+.+.||+||++++..-
T Consensus 130 gdg~---~g~~~~apfD~I~v~~a~---------------~~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 130 GDGS---EGWPEEAPFDRIIVTAAV---------------PEIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp S-GG---GTTGGG-SEEEEEESSBB---------------SS--HHHHHTEEEEEEEEEEES
T ss_pred cchh---hccccCCCcCEEEEeecc---------------chHHHHHHHhcCCCcEEEEEEc
Confidence 7653 333344589999998432 1334567888999999987654
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=99.72 E-value=1.4e-16 Score=141.72 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=89.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+++.+|||||||+|..+..+++.. +.+|+|||+|+.|++.|+++++..+ ...+++++.+|..++ ..++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-----g~~v~gvD~s~~~i~~a~~~~~~~g---~~~~v~~~~~D~~~~---~~~~~ 185 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-----GANVKGITLSPVQAARANALAAAQG---LSDKVSFQVADALNQ---PFEDG 185 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcCcccC---CCCCC
Confidence 567899999999999999999875 3699999999999999999988766 346789988766443 33456
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.||+|++.. ..++.++..++++++.++|||||+++++++.
T Consensus 186 ~FD~V~s~~---------~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 186 QFDLVWSME---------SGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred CccEEEECC---------chhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 899999872 3444556779999999999999999998763
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.71 E-value=6.7e-16 Score=130.18 Aligned_cols=111 Identities=18% Similarity=0.268 Sum_probs=89.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..+++..++ +++|+|+|+++++++.|+++++..+ ..+++++.++..++. .+
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~---~~ 111 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGP---EGHVIGLDFSENMLSVGRQKVKDAG----LHNVELVHGNAMELP---FD 111 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHhcC----CCceEEEEechhcCC---CC
Confidence 4568899999999999999999998754 5799999999999999999988765 467888887765432 23
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.+||+|+++. ..++.++..++++++.++|||||++++.+.
T Consensus 112 ~~~fD~V~~~~---------~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 112 DNSFDYVTIGF---------GLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCccEEEEec---------ccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 45799998873 233445567899999999999999988765
No 17
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.71 E-value=2.2e-16 Score=131.88 Aligned_cols=106 Identities=18% Similarity=0.156 Sum_probs=83.8
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||+|||+|+.+..+++..+. .++|+++|+++++++.|++++++.+ ..+++++.++..+. ..
T Consensus 73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~---~g~V~~vD~~~~~~~~A~~~~~~~g----~~~v~~~~~d~~~~---~~ 142 (215)
T TIGR00080 73 LELKPGMKVLEIGTGSGYQAAVLAEIVGR---DGLVVSIERIPELAEKAERRLRKLG----LDNVIVIVGDGTQG---WE 142 (215)
T ss_pred hCCCCcCEEEEECCCccHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHCC----CCCeEEEECCcccC---Cc
Confidence 35778999999999999999999998754 4689999999999999999999877 47899988665432 22
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...+||+|+++... ..+.+.+.+.|||||++++...
T Consensus 143 ~~~~fD~Ii~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 143 PLAPYDRIYVTAAG---------------PKIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred ccCCCCEEEEcCCc---------------ccccHHHHHhcCcCcEEEEEEc
Confidence 23479999987321 2345668889999999987543
No 18
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.71 E-value=9.6e-16 Score=123.33 Aligned_cols=111 Identities=27% Similarity=0.381 Sum_probs=85.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.+++.+++..+ ..+|+++|+++.+++.|++|++.++ ..+++++..|. .+... +..
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~----~~~v~~vDi~~~a~~~a~~n~~~n~----~~~v~~~~~d~---~~~~~-~~~ 98 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP----DAKVTAVDINPDALELAKRNAERNG----LENVEVVQSDL---FEALP-DGK 98 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST----CEEEEEEESBHHHHHHHHHHHHHTT----CTTEEEEESST---TTTCC-TTC
T ss_pred cCCeEEEecCChHHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHHHHHhcC----ccccccccccc---ccccc-ccc
Confidence 678999999999999999999853 4789999999999999999999987 34488876444 33333 458
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|++|+|+....+ .......++++++.++|||||.++++..
T Consensus 99 fD~Iv~NPP~~~~~~----~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 99 FDLIVSNPPFHAGGD----DGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp EEEEEE---SBTTSH----CHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEEccchhcccc----cchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 999999976432221 1223457899999999999999988665
No 19
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.70 E-value=2.8e-15 Score=134.40 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=97.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++.+|||+|||+|.+++.+++..+ +.+|+|+|+|++|++.|++|++.++ .+++++++|..+. ..+..
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p----~a~VtAVDiS~~ALe~AreNa~~~g-----~rV~fi~gDl~e~--~l~~~ 317 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERP----DAFVRASDISPPALETARKNAADLG-----ARVEFAHGSWFDT--DMPSE 317 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcC-----CcEEEEEcchhcc--ccccC
Confidence 45667999999999999999998743 5899999999999999999998866 3788888665321 11223
Q ss_pred CcEEEEEEeCCCCCCCCCceee-----c-----------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHH
Q 041272 172 TAVRLVAFNLGYLPGGDKSVIT-----T-----------SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEA 235 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~-----~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 235 (267)
.+||+|++|+||++..+..... . ....+++++++.+.|+|||.+++... ......+.+
T Consensus 318 ~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG------~~Q~e~V~~ 391 (423)
T PRK14966 318 GKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG------FDQGAAVRG 391 (423)
T ss_pred CCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC------ccHHHHHHH
Confidence 4799999999998876532221 1 12346788888999999999876543 224456666
Q ss_pred HHHhC
Q 041272 236 FARSL 240 (267)
Q Consensus 236 ~~~~l 240 (267)
.+...
T Consensus 392 ll~~~ 396 (423)
T PRK14966 392 VLAEN 396 (423)
T ss_pred HHHHC
Confidence 66653
No 20
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.70 E-value=3.2e-16 Score=134.81 Aligned_cols=113 Identities=15% Similarity=0.157 Sum_probs=85.0
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
..+-+..+++|++|||||||.|.++..+|++. +++|+||.+|++..+.|++++++.+ +..++++...|..++
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-----g~~v~gitlS~~Q~~~a~~~~~~~g---l~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-----GCHVTGITLSEEQAEYARERIREAG---LEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH-------EEEEEES-HHHHHHHHHHHHCST---SSSTEEEEES-GGG-
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-----CcEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEeecccc
Confidence 33445578999999999999999999999997 3799999999999999999999988 567888888666554
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.. +||.|++- ....+ ......+++++.++|||||++++...
T Consensus 125 ~~------~fD~IvSi---------~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 125 PG------KFDRIVSI---------EMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp --------S-SEEEEE---------SEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred CC------CCCEEEEE---------echhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 32 79998887 33333 36778999999999999999988655
No 21
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.69 E-value=8e-16 Score=124.86 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=97.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.++..++... |+++|+|+|.|+.|++.+++++++++ ..++++++++..++. ...+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~----~~~~V~~iD~s~~~~~~a~~~~~~~~----~~~i~~i~~d~~~~~----~~~~ 109 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR----PELKLTLLESNHKKVAFLREVKAELG----LNNVEIVNGRAEDFQ----HEEQ 109 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC----CCCeEEEEeCcHHHHHHHHHHHHHhC----CCCeEEEecchhhcc----ccCC
Confidence 47899999999999999998764 25799999999999999999998876 457999988776642 2347
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEeee
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQML 253 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (267)
||+|+++. ......+++.+.++|+|||.+++... . .....+....+.....+++.+.....
T Consensus 110 fD~I~s~~-------------~~~~~~~~~~~~~~LkpgG~lvi~~~---~---~~~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 110 FDVITSRA-------------LASLNVLLELTLNLLKVGGYFLAYKG---K---KYLDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred ccEEEehh-------------hhCHHHHHHHHHHhcCCCCEEEEEcC---C---CcHHHHHHHHHhhhhcCceEeecccc
Confidence 99999873 12235688889999999999987642 1 12233333444444456777776665
Q ss_pred cCC
Q 041272 254 NRP 256 (267)
Q Consensus 254 ~~~ 256 (267)
..+
T Consensus 171 ~~~ 173 (181)
T TIGR00138 171 TGP 173 (181)
T ss_pred CCC
Confidence 544
No 22
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.69 E-value=3.4e-16 Score=134.05 Aligned_cols=109 Identities=19% Similarity=0.320 Sum_probs=90.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++. +.+|+|+|+|++|++.|++++...+ ...++++++++..++.... +.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~------g~~v~~vD~s~~~l~~a~~~~~~~g---~~~~v~~~~~d~~~l~~~~--~~ 111 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL------GHQVILCDLSAEMIQRAKQAAEAKG---VSDNMQFIHCAAQDIAQHL--ET 111 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcC---CccceEEEEcCHHHHhhhc--CC
Confidence 45679999999999999999987 4789999999999999999998876 4568899988877765433 34
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.||+|++. .++++.+++..+++++.++|||||++++..+.
T Consensus 112 ~fD~V~~~---------~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 112 PVDLILFH---------AVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred CCCEEEeh---------hHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 79999987 34555566779999999999999999887654
No 23
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.69 E-value=3.6e-16 Score=133.26 Aligned_cols=121 Identities=15% Similarity=0.186 Sum_probs=90.6
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
....++...+.++.+|||+|||+|..+..+++.+.. |+.+|+|+|+|+.|++.|++++...+ ...++++++++..
T Consensus 45 ~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~--~~~~v~gvD~S~~ml~~A~~~~~~~~---~~~~v~~~~~d~~ 119 (247)
T PRK15451 45 MIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHH--DNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIR 119 (247)
T ss_pred HHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCC--CCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEeCChh
Confidence 334444455678899999999999999999885421 46899999999999999999998765 3457888886654
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceee-chhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT-TSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
++ ..+ .+|++++++. +++ ..+....+++++++.|||||.+++.+..
T Consensus 120 ~~---~~~--~~D~vv~~~~--------l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 120 DI---AIE--NASMVVLNFT--------LQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred hC---CCC--CCCEEehhhH--------HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 43 222 4677777631 111 2344578999999999999999998754
No 24
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.69 E-value=4.9e-16 Score=116.97 Aligned_cols=116 Identities=28% Similarity=0.373 Sum_probs=90.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
|.+|||+|||+|.++..+++.. . .+++|+|+++.+++.|++++...+ ...+++++++|..+..+... +.+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~----~~~~gvdi~~~~~~~a~~~~~~~~---~~~~~~~~~~D~~~~~~~~~-~~~~ 71 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-A----ARVTGVDIDPEAVELARRNLPRNG---LDDRVEVIVGDARDLPEPLP-DGKF 71 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-T----CEEEEEESSHHHHHHHHHHCHHCT---TTTTEEEEESHHHHHHHTCT-TT-E
T ss_pred CCEEEEcCcchHHHHHHHHHHC-C----CeEEEEEECHHHHHHHHHHHHHcc---CCceEEEEECchhhchhhcc-Ccee
Confidence 5689999999999999999884 2 799999999999999999999876 45789999988877764333 3589
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|+|++|++|.+..... .........+++++.++|||||.++++.+
T Consensus 72 D~Iv~npP~~~~~~~~-~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 72 DLIVTNPPYGPRSGDK-AALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EEEEE--STTSBTT-----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEECCCCccccccc-hhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9999999886542111 11223567899999999999999988764
No 25
>PRK04266 fibrillarin; Provisional
Probab=99.69 E-value=1.8e-15 Score=126.78 Aligned_cols=145 Identities=14% Similarity=0.211 Sum_probs=98.2
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||+|||+|.++..+++.++ .++|+|+|++++|++.+.+++++ ..|+.++.++..+......
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~----~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~ 137 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE----EGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAH 137 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC----CCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhh
Confidence 4577999999999999999999999874 36999999999999988887765 2567888766543211111
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCC-ChhhHHHHHHHHHhCCCCceEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPG-GREELEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~ 248 (267)
-...||+++.++.. +.....+++++.++|||||.++++.+..... ..+..+..+...+.+...+|+.+
T Consensus 138 l~~~~D~i~~d~~~-----------p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i 206 (226)
T PRK04266 138 VVEKVDVIYQDVAQ-----------PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEIL 206 (226)
T ss_pred ccccCCEEEECCCC-----------hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 11358999876321 2223457899999999999999953321110 11112222334456666789888
Q ss_pred EEeeecC
Q 041272 249 KFQMLNR 255 (267)
Q Consensus 249 ~~~~~~~ 255 (267)
+...+..
T Consensus 207 ~~~~l~p 213 (226)
T PRK04266 207 EVVDLEP 213 (226)
T ss_pred EEEcCCC
Confidence 7776654
No 26
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.69 E-value=8.1e-16 Score=132.90 Aligned_cols=113 Identities=25% Similarity=0.326 Sum_probs=91.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|..+..+++..+. ..+|+|+|++++|++.|+++....+ ..+++++.++..++ ..+
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~---~~~v~gvD~s~~~l~~A~~~~~~~g----~~~v~~~~~d~~~l---~~~ 143 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGP---TGKVIGVDMTPEMLAKARANARKAG----YTNVEFRLGEIEAL---PVA 143 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEECCCHHHHHHHHHHHHHcC----CCCEEEEEcchhhC---CCC
Confidence 4678999999999999999988887654 5689999999999999999988776 46888887665443 233
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+..||+|+++. ++++.++..+++++++++|||||++++.....
T Consensus 144 ~~~fD~Vi~~~---------v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 144 DNSVDVIISNC---------VINLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred CCceeEEEEcC---------cccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 45899999883 44555566789999999999999999987643
No 27
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.68 E-value=3.9e-16 Score=112.51 Aligned_cols=95 Identities=26% Similarity=0.356 Sum_probs=75.8
Q ss_pred EEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEE
Q 041272 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA 178 (267)
Q Consensus 99 LDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii 178 (267)
||+|||+|..+..++++ + +.+|+|+|+++++++.++++....+ +.++..+..++ ..++.+||+|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~----~~~v~~~D~~~~~~~~~~~~~~~~~-------~~~~~~d~~~l---~~~~~sfD~v~ 65 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G----GASVTGIDISEEMLEQARKRLKNEG-------VSFRQGDAEDL---PFPDNSFDVVF 65 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T----TCEEEEEES-HHHHHHHHHHTTTST-------EEEEESBTTSS---SS-TT-EEEEE
T ss_pred CEecCcCCHHHHHHHhc-c----CCEEEEEeCCHHHHHHHHhcccccC-------chheeehHHhC---ccccccccccc
Confidence 89999999999999998 3 4899999999999999999887643 44666555444 44567999999
Q ss_pred EeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 179 FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 179 ~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
+. .+.++.++..++++++.|+|||||+++|
T Consensus 66 ~~---------~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 66 SN---------SVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EE---------SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cc---------cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 98 4566668889999999999999999975
No 28
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.68 E-value=3.4e-15 Score=129.58 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=90.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.+++.|++|++.++ ...+++++++|.. +..+ +..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~----~~~v~avDis~~al~~A~~n~~~~~---~~~~i~~~~~D~~---~~~~-~~~ 189 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP----EAEVDAVDISPDALAVAEINIERHG---LEDRVTLIQSDLF---AALP-GRK 189 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECchh---hccC-CCC
Confidence 457999999999999999998853 4799999999999999999999877 3457889886653 2222 347
Q ss_pred EEEEEEeCCCCCCCCCc-----eeech-----------hhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKS-----VITTS-----------ETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~-----~~~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|++|+||++..+.. +.+.+ .....+++++.++|+|||++++...
T Consensus 190 fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 190 YDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred ccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 99999999998765321 11111 2347789999999999999987554
No 29
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=6.6e-15 Score=127.24 Aligned_cols=127 Identities=22% Similarity=0.276 Sum_probs=96.8
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEE
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL 176 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ 176 (267)
+|||+|||||.+++.++...+ ..+|+|+|+|+.+++.|++|+..++ . .++.+++. ++.+.... +||+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~----~~~V~a~Dis~~Al~~A~~Na~~~~---l-~~~~~~~~---dlf~~~~~--~fDl 179 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP----DAEVIAVDISPDALALARENAERNG---L-VRVLVVQS---DLFEPLRG--KFDL 179 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc----CCeEEEEECCHHHHHHHHHHHHHcC---C-ccEEEEee---ecccccCC--ceeE
Confidence 799999999999999999864 4799999999999999999999988 3 56556553 44444432 7999
Q ss_pred EEEeCCCCCCCCCcee-----ec-----------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhC
Q 041272 177 VAFNLGYLPGGDKSVI-----TT-----------SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSL 240 (267)
Q Consensus 177 ii~~~~~lp~~d~~~~-----~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l 240 (267)
|++|+||+|..+.... +. ......++.++.+.|+|||.+++..-. .....+.+.+...
T Consensus 180 IVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~------~q~~~v~~~~~~~ 253 (280)
T COG2890 180 IVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL------TQGEAVKALFEDT 253 (280)
T ss_pred EEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC------CcHHHHHHHHHhc
Confidence 9999999999722221 11 234578899999999999999776542 2345666666665
Q ss_pred CC
Q 041272 241 SV 242 (267)
Q Consensus 241 ~~ 242 (267)
..
T Consensus 254 ~~ 255 (280)
T COG2890 254 GF 255 (280)
T ss_pred CC
Confidence 53
No 30
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.67 E-value=1.5e-15 Score=125.49 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=87.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-hhhhhcCCCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~~~~ 172 (267)
++.+|||+|||+|..+..+++..+ +.+|+|+|+|+++++.|+++++.++ ..++++++++. ..+..... +.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p----~~~v~gVD~s~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~l~~~~~-~~ 110 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP----DINFIGIEVHEPGVGKALKKIEEEG----LTNLRLLCGDAVEVLLDMFP-DG 110 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC----CccEEEEEechHHHHHHHHHHHHcC----CCCEEEEecCHHHHHHHHcC-cc
Confidence 678999999999999999998753 4799999999999999999998876 47899999887 55543332 34
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||.++++++. |...............+++++.++|||||++++.+.
T Consensus 111 ~~D~V~~~~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 111 SLDRIYLNFPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ccceEEEECCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 79999988532 111100000011236899999999999999998764
No 31
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.67 E-value=1.8e-14 Score=118.64 Aligned_cols=133 Identities=16% Similarity=0.108 Sum_probs=97.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..+++..+ +++|+++|+|+++++.|++|+++.+ ..+++++.++..+.......
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~----~~~V~~vD~s~~~~~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~ 108 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCP----KGRVIAIERDEEVVNLIRRNCDRFG----VKNVEVIEGSAPECLAQLAP 108 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhC----CCCeEEEECchHHHHhhCCC
Confidence 456788999999999999999997643 4899999999999999999998876 46788888776543222211
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKF 250 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (267)
.+|.++.+. ......+++++.++|+|||++++... ..+....+.+.++.+...++++.+.
T Consensus 109 --~~d~v~~~~-------------~~~~~~~l~~~~~~LkpgG~li~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 109 --APDRVCIEG-------------GRPIKEILQAVWQYLKPGGRLVATAS-----SLEGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred --CCCEEEEEC-------------CcCHHHHHHHHHHhcCCCeEEEEEee-----cHHHHHHHHHHHHhcCCCCceEEEE
Confidence 234444431 11236889999999999999988876 2334455666677777777777664
Q ss_pred e
Q 041272 251 Q 251 (267)
Q Consensus 251 ~ 251 (267)
.
T Consensus 169 ~ 169 (196)
T PRK07402 169 A 169 (196)
T ss_pred E
Confidence 3
No 32
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.66 E-value=2.4e-14 Score=116.93 Aligned_cols=121 Identities=12% Similarity=0.092 Sum_probs=88.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++..+ +.+|+++|+++.+++.|+++++.++ ..+++++.++.. ...
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~----~~~v~~vD~s~~~~~~a~~n~~~~~----~~~i~~~~~d~~---~~~-- 94 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFP----SLQVTAIERNPDALRLIKENRQRFG----CGNIDIIPGEAP---IEL-- 94 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHhC----CCCeEEEecCch---hhc--
Confidence 356788999999999999999998753 5899999999999999999998876 357888876542 112
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCC
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 241 (267)
...||+++++.. . .....+++.+.+.|||||++++... ...+...+..+++...
T Consensus 95 ~~~~D~v~~~~~---------~---~~~~~~l~~~~~~Lk~gG~lv~~~~-----~~~~~~~~~~~l~~~g 148 (187)
T PRK08287 95 PGKADAIFIGGS---------G---GNLTAIIDWSLAHLHPGGRLVLTFI-----LLENLHSALAHLEKCG 148 (187)
T ss_pred CcCCCEEEECCC---------c---cCHHHHHHHHHHhcCCCeEEEEEEe-----cHhhHHHHHHHHHHCC
Confidence 236899988621 0 1235788999999999999987654 1223344555555544
No 33
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.66 E-value=7.2e-16 Score=135.40 Aligned_cols=107 Identities=16% Similarity=0.221 Sum_probs=88.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||||||+|.++..+++. +.+|+|||.++++++.|++++...+ ...++++++++..++. ..+..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~------g~~V~GID~s~~~i~~Ar~~~~~~~---~~~~i~~~~~dae~l~---~~~~~ 198 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM------GATVTGVDAVDKNVKIARLHADMDP---VTSTIEYLCTTAEKLA---DEGRK 198 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhcC---cccceeEEecCHHHhh---hccCC
Confidence 5679999999999999999875 4799999999999999998876543 2357889887765553 23457
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
||+|++. .++++..++..+++++.++|||||.+++.+..
T Consensus 199 FD~Vi~~---------~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 199 FDAVLSL---------EVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred CCEEEEh---------hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999987 46677777889999999999999999998753
No 34
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.65 E-value=3.5e-15 Score=122.63 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=89.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||||||+|.++..+|+.. |+.+|+|+|+++.+++.|++++...+ ..|+++++++..++.....++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~----p~~~v~gvD~~~~~l~~a~~~~~~~~----l~ni~~i~~d~~~~~~~~~~~~~ 87 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN----PDKNFLGIEIHTPIVLAANNKANKLG----LKNLHVLCGDANELLDKFFPDGS 87 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC----CCCCEEEEEeeHHHHHHHHHHHHHhC----CCCEEEEccCHHHHHHhhCCCCc
Confidence 56699999999999999999885 45899999999999999999998876 46899999888776543334457
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+|.++.+++. |..+.......-....+++++.++|||||.+++...
T Consensus 88 ~d~v~~~~pd-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 88 LSKVFLNFPD-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred eeEEEEECCC-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999998642 211111000001125799999999999999988764
No 35
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.65 E-value=4.8e-15 Score=127.38 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=99.9
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||||||+|..+..+++.. +.+|+|+|+|+.+++.|+++... ..++.++..+.. ....
T Consensus 48 l~l~~~~~VLDiGcG~G~~a~~la~~~-----~~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~---~~~~ 113 (263)
T PTZ00098 48 IELNENSKVLDIGSGLGGGCKYINEKY-----GAHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDIL---KKDF 113 (263)
T ss_pred CCCCCCCEEEEEcCCCChhhHHHHhhc-----CCEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcc---cCCC
Confidence 357889999999999999999998764 36999999999999999998754 246888775543 3233
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeech-hhHHHHHHHHHhcccCCcEEEEEEecCCCC--ChhhHH-----------HHHH
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTS-ETTKMALEAAERILIPGGLISMVVYVGHPG--GREELE-----------AVEA 235 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~~~~~~-----------~~~~ 235 (267)
++.+||+|++.. .+.|.. .+...++++++++|||||+++++++..... ...... ....
T Consensus 114 ~~~~FD~V~s~~--------~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (263)
T PTZ00098 114 PENTFDMIYSRD--------AILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQE 185 (263)
T ss_pred CCCCeEEEEEhh--------hHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHH
Confidence 345899999852 122322 467899999999999999999988743221 111110 1134
Q ss_pred HHHhCCCCceEEEEEeeec
Q 041272 236 FARSLSVDDWICCKFQMLN 254 (267)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~ 254 (267)
+.+.+...+|..+....+.
T Consensus 186 ~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 186 YGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHHHHCCCCeeeEEeCc
Confidence 4445555677777665543
No 36
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.65 E-value=1.8e-16 Score=131.67 Aligned_cols=104 Identities=14% Similarity=0.248 Sum_probs=83.4
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccccccc----ceEEEecChhhhhhcCCC
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG----LVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~----~v~~~~~~~~~l~~~~~~ 170 (267)
|++|||+|||+|.++..||+. ++.|+|||+++.||+.|+++..... .... ++++.+.+.++..
T Consensus 90 g~~ilDvGCGgGLLSepLArl------ga~V~GID~s~~~V~vA~~h~~~dP--~~~~~~~y~l~~~~~~~E~~~----- 156 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL------GAQVTGIDASDDMVEVANEHKKMDP--VLEGAIAYRLEYEDTDVEGLT----- 156 (282)
T ss_pred CceEEEeccCccccchhhHhh------CCeeEeecccHHHHHHHHHhhhcCc--hhccccceeeehhhcchhhcc-----
Confidence 578999999999999999998 6899999999999999999944322 1122 3455544433332
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..||.|++. .+++|..+++.+++.+.++|||||.+++++..
T Consensus 157 -~~fDaVvcs---------evleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 157 -GKFDAVVCS---------EVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred -cccceeeeH---------HHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 249999998 68889999999999999999999999998753
No 37
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.65 E-value=3.4e-15 Score=126.65 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=87.9
Q ss_pred HHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh
Q 041272 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE 166 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 166 (267)
+....+.++.+|||+|||+|..+..+++.+.. |+.+|+|+|+|+.|++.|+++++..+ ...++++++++..++.
T Consensus 46 l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~--p~~~v~gvD~s~~ml~~a~~~~~~~~---~~~~v~~~~~d~~~~~- 119 (239)
T TIGR00740 46 LAERFVTPDSNVYDLGCSRGAATLSARRNINQ--PNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHVE- 119 (239)
T ss_pred HHHHhCCCCCEEEEecCCCCHHHHHHHHhcCC--CCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECChhhCC-
Confidence 33334567889999999999999999987532 46899999999999999999987654 2357888876664432
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceee-chhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVIT-TSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.+ ++|+++++.. +++ ..++...++++++++|||||.+++.+...
T Consensus 120 --~~--~~d~v~~~~~--------l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 120 --IK--NASMVILNFT--------LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred --CC--CCCEEeeecc--------hhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 22 3667766631 111 23456799999999999999999987643
No 38
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.65 E-value=3.1e-14 Score=113.53 Aligned_cols=129 Identities=19% Similarity=0.119 Sum_probs=99.1
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
..+.+..+++|++++|+|||||.+++.++ +.+ |.++||+||.++++++..++|+++.+ .+|++++.+++.+.
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~---p~~~v~AIe~~~~a~~~~~~N~~~fg----~~n~~vv~g~Ap~~ 96 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAG---PSGRVIAIERDEEALELIERNAARFG----VDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhC---CCceEEEEecCHHHHHHHHHHHHHhC----CCcEEEEeccchHh
Confidence 34445578899999999999999999999 444 37999999999999999999999988 79999998877544
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCC
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSV 242 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (267)
...+ .++|.++..= ......+++.+...|||||++++... ..+......++++.+..
T Consensus 97 L~~~---~~~daiFIGG-------------g~~i~~ile~~~~~l~~ggrlV~nai-----tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 97 LPDL---PSPDAIFIGG-------------GGNIEEILEAAWERLKPGGRLVANAI-----TLETLAKALEALEQLGG 153 (187)
T ss_pred hcCC---CCCCEEEECC-------------CCCHHHHHHHHHHHcCcCCeEEEEee-----cHHHHHHHHHHHHHcCC
Confidence 3322 2577777662 13346899999999999999998776 33444445555555554
No 39
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.65 E-value=2.8e-14 Score=117.64 Aligned_cols=112 Identities=25% Similarity=0.303 Sum_probs=87.4
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
...+.++.+|||+|||+|.++..+++..+. +.+|+++|+++++++.|+++++.++ ...++.++.++..+.....
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~---~~~v~avD~~~~~~~~a~~n~~~~g---~~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGE---TGKVYAVDKDEKAINLTRRNAEKFG---VLNNIVLIKGEAPEILFTI 108 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHhC---CCCCeEEEEechhhhHhhc
Confidence 345778999999999999999999987653 5799999999999999999998876 3467888877765433222
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...||.++.+.+ ......+++.+.+.|||||++++...
T Consensus 109 --~~~~D~V~~~~~------------~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 109 --NEKFDRIFIGGG------------SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred --CCCCCEEEECCC------------cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 236899988631 12346899999999999999986443
No 40
>PRK14967 putative methyltransferase; Provisional
Probab=99.65 E-value=1.1e-14 Score=122.26 Aligned_cols=123 Identities=22% Similarity=0.216 Sum_probs=89.9
Q ss_pred hhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh
Q 041272 84 ANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR 163 (267)
Q Consensus 84 ~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (267)
...+....+.++.+|||+|||+|.++..+++. + ..+|+|+|+++.+++.|++|+..++ .+++++.++..+
T Consensus 26 ~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~-~----~~~v~~vD~s~~~l~~a~~n~~~~~-----~~~~~~~~d~~~ 95 (223)
T PRK14967 26 ADALAAEGLGPGRRVLDLCTGSGALAVAAAAA-G----AGSVTAVDISRRAVRSARLNALLAG-----VDVDVRRGDWAR 95 (223)
T ss_pred HHHHHhcccCCCCeEEEecCCHHHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHHhC-----CeeEEEECchhh
Confidence 33343345678899999999999999999975 2 2599999999999999999998766 257777655433
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceee------------chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVIT------------TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~------------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.. ++..||+|++|++|.+........ .......+++++.++|||||++++...
T Consensus 96 ---~~-~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 96 ---AV-EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ---hc-cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 22 234799999999887664321100 112246788999999999999987543
No 41
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.64 E-value=7.1e-15 Score=121.06 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=81.6
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|..+..+|+. +.+|+|+|+|++|++.+++++...+ ..+++++..+..++ .. .
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~------g~~V~gvD~S~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~---~~-~ 93 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN------GFDVTAWDKNPMSIANLERIKAAEN----LDNLHTAVVDLNNL---TF-D 93 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHcC----CCcceEEecChhhC---Cc-C
Confidence 345689999999999999999987 4799999999999999999988766 35677776554332 22 2
Q ss_pred CcEEEEEEeCCCCCCCCCceee-chhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVIT-TSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..||+|+++.. +++ .+.....+++++.++|||||.+++..
T Consensus 94 ~~fD~I~~~~~--------~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 94 GEYDFILSTVV--------LMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred CCcCEEEEecc--------hhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 36999998731 111 33467899999999999999976544
No 42
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.64 E-value=6.5e-15 Score=121.71 Aligned_cols=116 Identities=22% Similarity=0.242 Sum_probs=91.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCC--CCcEEEEEeCChHHHHHHHHHHhhcccccccc--ceEEEecChhhhhhcC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADES--SAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG--LVKLFNMCHSRMEEIV 168 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~--p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~ 168 (267)
.++++|||++||||.++..+.++++..+ ...+|+.+|+|++|++.+++++.+.+ ... ++.++.+|+++++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~---l~~~~~~~w~~~dAE~Lp--- 172 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP---LKASSRVEWVEGDAEDLP--- 172 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC---CCcCCceEEEeCCcccCC---
Confidence 4678999999999999999999875311 12799999999999999999997754 333 4888888886665
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
.++..+|.....++. ...+++++.+++++|+|||||++.+..++..
T Consensus 173 Fdd~s~D~yTiafGI---------RN~th~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 173 FDDDSFDAYTIAFGI---------RNVTHIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred CCCCcceeEEEecce---------ecCCCHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 445688988777532 2345567999999999999999998888543
No 43
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.64 E-value=2.5e-14 Score=124.37 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=89.4
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
.+|||+|||+|.+++.++...+ +.+|+|+|+|+.+++.|++|++.++ ...++++++++.. +... +..||
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~----~~~v~avDis~~al~~a~~n~~~~~---~~~~v~~~~~d~~---~~~~-~~~fD 184 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP----NAEVIAVDISPDALAVAEENAEKNQ---LEHRVEFIQSNLF---EPLA-GQKID 184 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECchh---ccCc-CCCcc
Confidence 6999999999999999999853 4799999999999999999999877 2345888876543 2222 22699
Q ss_pred EEEEeCCCCCCCCCcee-----ech-----------hhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 176 LVAFNLGYLPGGDKSVI-----TTS-----------ETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~~~-----~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+|++|++|++..+.... +.+ .....+++++.++|+|||++++...
T Consensus 185 lIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 185 IIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred EEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 99999999887643211 111 2567899999999999999977554
No 44
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.64 E-value=2.7e-15 Score=128.45 Aligned_cols=102 Identities=19% Similarity=0.124 Sum_probs=81.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.|++.|+++ ++++++++..++ . .
T Consensus 26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p----~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~---~-~ 86 (255)
T PRK14103 26 GAERARRVVDLGCGPGNLTRYLARRWP----GAVIEALDSSPEMVAAARER-----------GVDARTGDVRDW---K-P 86 (255)
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhC---C-C
Confidence 345788999999999999999998853 57999999999999999762 466777665443 2 2
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+..||+|+++. ++++.++...++++++++|||||.+++..+
T Consensus 87 ~~~fD~v~~~~---------~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 87 KPDTDVVVSNA---------ALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred CCCceEEEEeh---------hhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 35799999983 445556678999999999999999998754
No 45
>PTZ00146 fibrillarin; Provisional
Probab=99.63 E-value=1.6e-14 Score=123.98 Aligned_cols=156 Identities=10% Similarity=0.100 Sum_probs=98.8
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
...++++++|||+|||+|.++..++..++. .++|+++|+++.|.+...+.++. ..|+.++..|......+.
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~---~G~VyAVD~s~r~~~dLl~~ak~------r~NI~~I~~Da~~p~~y~ 197 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGP---EGVVYAVEFSHRSGRDLTNMAKK------RPNIVPIIEDARYPQKYR 197 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCC---CCEEEEEECcHHHHHHHHHHhhh------cCCCEEEECCccChhhhh
Confidence 345789999999999999999999999875 57999999999876555554433 246777776654321111
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCC-hhhHHHHHHHHHhCCCCceEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGG-REELEAVEAFARSLSVDDWIC 247 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 247 (267)
.....+|+|+++.. .++....++.++.++|||||.|+|.....+... ......+..-.+.+.+.+|..
T Consensus 198 ~~~~~vDvV~~Dva-----------~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~ 266 (293)
T PTZ00146 198 MLVPMVDVIFADVA-----------QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKP 266 (293)
T ss_pred cccCCCCEEEEeCC-----------CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCce
Confidence 11236999999952 133445667789999999999998543222211 111122222224455566776
Q ss_pred EEEeeecC--CCCceEEEe
Q 041272 248 CKFQMLNR--PLAPVLVFL 264 (267)
Q Consensus 248 ~~~~~~~~--~~~p~~~~~ 264 (267)
++...+.. .++..++..
T Consensus 267 ~e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 267 KEQLTLEPFERDHAVVIGV 285 (293)
T ss_pred EEEEecCCccCCcEEEEEE
Confidence 66555543 244444433
No 46
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.62 E-value=2.6e-14 Score=115.97 Aligned_cols=112 Identities=20% Similarity=0.204 Sum_probs=85.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++.. .+|+|+|+|+++++.|+++++.++ .+++++.++..+ .. ..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~---~~--~~ 81 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG------KCILTTDINPFAVKELRENAKLNN-----VGLDVVMTDLFK---GV--RG 81 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC------CEEEEEECCHHHHHHHHHHHHHcC-----CceEEEEccccc---cc--CC
Confidence 456799999999999999999862 489999999999999999998765 357777655433 22 23
Q ss_pred cEEEEEEeCCCCCCCCCceee------------chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVIT------------TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~------------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+||+|++|+++++..+..-.. ......++++++.++|||||.+++...
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 799999999886554321100 112257889999999999999988765
No 47
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.62 E-value=1.8e-14 Score=126.25 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=88.8
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
.+|||+|||+|.++..+++..+ +.+|+|+|+|+.+++.|++|++.++ ...++++++++.. +.++ ...||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p----~~~V~avDis~~al~~A~~n~~~~~---l~~~i~~~~~D~~---~~l~-~~~fD 203 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP----DAEVDAVDISPDALAVAEINIERHG---LEDRVTLIESDLF---AALP-GRRYD 203 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhC---CCCcEEEEECchh---hhCC-CCCcc
Confidence 6899999999999999998753 5899999999999999999999877 3357889886653 2222 24799
Q ss_pred EEEEeCCCCCCCCCc-----eeec-----------hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 176 LVAFNLGYLPGGDKS-----VITT-----------SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~-----~~~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+|++|+||++..+.. +.+. ......+++++.++|+|||++++...
T Consensus 204 lIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 204 LIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred EEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 999999998764321 1111 13457889999999999999987544
No 48
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.62 E-value=1.4e-14 Score=109.76 Aligned_cols=108 Identities=23% Similarity=0.216 Sum_probs=83.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++..+ +.+|+|+|+++.+++.++++++..+ ..+++++.++..+.....
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~-- 85 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVP----NGRVYAIERNPEALRLIERNARRFG----VSNIVIVEGDAPEALEDS-- 85 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCC----CceEEEEcCCHHHHHHHHHHHHHhC----CCceEEEeccccccChhh--
Confidence 456678999999999999999999864 4799999999999999999998876 457888776544322111
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+||.++.... .....++++++.+.|||||++++...
T Consensus 86 ~~~~D~v~~~~~------------~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 LPEPDRVFIGGS------------GGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cCCCCEEEECCc------------chhHHHHHHHHHHHcCCCCEEEEEec
Confidence 136899988631 12335899999999999999988654
No 49
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.62 E-value=1.8e-14 Score=133.94 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=87.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++.+|||+|||+|.++..+++.. +.+|+|+|+|+++++.|+++.... ..+++++..+..+ ...++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvDiS~~~l~~A~~~~~~~-----~~~v~~~~~d~~~---~~~~~ 330 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENF-----DVHVVGIDLSVNMISFALERAIGR-----KCSVEFEVADCTK---KTYPD 330 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHhhcC-----CCceEEEEcCccc---CCCCC
Confidence 5678899999999999999999875 369999999999999999987643 3578888765533 22234
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.+||+|++. ..+++.+++..++++++++|||||++++.++..
T Consensus 331 ~~fD~I~s~---------~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 331 NSFDVIYSR---------DTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred CCEEEEEEC---------CcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 579999997 344555667899999999999999999987643
No 50
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.61 E-value=3.5e-14 Score=130.77 Aligned_cols=132 Identities=16% Similarity=0.114 Sum_probs=96.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~~ 170 (267)
+.++.+|||+|||+|.+++.+|+. ..+|+|+|+|++|++.|++|++.++ ..++++++++..+... ....
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~------~~~V~gvD~s~~al~~A~~n~~~~~----~~~v~~~~~d~~~~l~~~~~~ 364 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQ------AAEVVGVEGVEAMVERARENARRNG----LDNVTFYHANLEEDFTDQPWA 364 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEeChHHhhhhhhhh
Confidence 467889999999999999999987 3689999999999999999999877 4679999887764322 1112
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKF 250 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (267)
+..||+|++|+++.. ..+.++.+.+ ++|+++++++|.+.. +..-+..+-..+|++.+.
T Consensus 365 ~~~fD~Vi~dPPr~g------------~~~~~~~l~~-~~~~~ivyvSCnp~t---------laRDl~~L~~~gY~l~~i 422 (443)
T PRK13168 365 LGGFDKVLLDPPRAG------------AAEVMQALAK-LGPKRIVYVSCNPAT---------LARDAGVLVEAGYRLKRA 422 (443)
T ss_pred cCCCCEEEECcCCcC------------hHHHHHHHHh-cCCCeEEEEEeChHH---------hhccHHHHhhCCcEEEEE
Confidence 346999999976622 1255665555 699999999997421 112222233457888888
Q ss_pred eeecC
Q 041272 251 QMLNR 255 (267)
Q Consensus 251 ~~~~~ 255 (267)
..+..
T Consensus 423 ~~~Dm 427 (443)
T PRK13168 423 GMLDM 427 (443)
T ss_pred EEecc
Confidence 77766
No 51
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.61 E-value=1.7e-16 Score=116.17 Aligned_cols=99 Identities=21% Similarity=0.323 Sum_probs=65.2
Q ss_pred EEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEE
Q 041272 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA 178 (267)
Q Consensus 99 LDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii 178 (267)
||+|||+|.++..+++..+ ..+++|+|+|+.|++.|++++.... ..+...+.....+....... .+||+|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~----~~~~~~~D~s~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~fD~V~ 71 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP----DARYTGVDISPSMLERARERLAELG----NDNFERLRFDVLDLFDYDPP-ESFDLVV 71 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-----EEEEEEEESSSSTTSTTCCCHHHCT-------EEEEE--SSS---CCC-----SEEE
T ss_pred CEeCccChHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHhhhcC----CcceeEEEeecCChhhcccc-cccceeh
Confidence 7999999999999999863 5899999999999999999998865 23444444333333332222 4799999
Q ss_pred EeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 179 FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 179 ~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
+. .++++.++...+++++.++|||||+|
T Consensus 72 ~~---------~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 72 AS---------NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EE----------TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hh---------hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 88 46666688889999999999999986
No 52
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.61 E-value=3e-14 Score=128.67 Aligned_cols=161 Identities=12% Similarity=0.063 Sum_probs=109.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccc-cceEEEecChhhhhhc-CC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK-GLVKLFNMCHSRMEEI-VP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~-~~ 169 (267)
+.++.+|||+|||+|.+++.++.. + ..+|+++|+|+.+++.|++|++.++ .. .+++++++|..++... ..
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~-g----a~~V~~VD~s~~al~~a~~N~~~Ng---l~~~~v~~i~~D~~~~l~~~~~ 289 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG-G----CSQVVSVDTSQEALDIARQNVELNK---LDLSKAEFVRDDVFKLLRTYRD 289 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC-C----CCEEEEEECCHHHHHHHHHHHHHcC---CCCCcEEEEEccHHHHHHHHHh
Confidence 346889999999999999876643 2 3699999999999999999999987 22 4789999888765432 22
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
.+..||+|++|+|+.......+.........+++.+.++|+|||+++...+.++. +.++...+..-...-....++++.
T Consensus 290 ~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~-~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM-TSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC-CHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3447999999998865543222222345677788899999999999877765554 333333333222333334566555
Q ss_pred EeeecCCCCceEE
Q 041272 250 FQMLNRPLAPVLV 262 (267)
Q Consensus 250 ~~~~~~~~~p~~~ 262 (267)
... ...++|...
T Consensus 369 ~~~-~~~DhP~~~ 380 (396)
T PRK15128 369 QFR-QAADHPVIA 380 (396)
T ss_pred EcC-CCCCCCCCC
Confidence 322 224666543
No 53
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.61 E-value=8.1e-14 Score=118.74 Aligned_cols=130 Identities=22% Similarity=0.249 Sum_probs=95.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
..+.+|||+|||+|.++..+++..+ ..+++|+|+++.+++.|++++...+ ..++++++++..+ .. ++.
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~----~~~v~~iD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~---~~-~~~ 153 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERP----DARVTAVDISPEALAVARKNAARLG----LDNVTFLQSDWFE---PL-PGG 153 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhc---cC-cCC
Confidence 3456999999999999999998754 4799999999999999999998876 4578888866543 22 235
Q ss_pred cEEEEEEeCCCCCCCCCceee------c-----------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHH
Q 041272 173 AVRLVAFNLGYLPGGDKSVIT------T-----------SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEA 235 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~------~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 235 (267)
+||+|++|++|.+..+..... . ......+++++.++|+|||++++.... .....+.+
T Consensus 154 ~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~------~~~~~~~~ 227 (251)
T TIGR03534 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY------DQGEAVRA 227 (251)
T ss_pred ceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc------cHHHHHHH
Confidence 799999999987654321110 0 122357899999999999999886531 23345555
Q ss_pred HHHhC
Q 041272 236 FARSL 240 (267)
Q Consensus 236 ~~~~l 240 (267)
+++..
T Consensus 228 ~l~~~ 232 (251)
T TIGR03534 228 LFEAA 232 (251)
T ss_pred HHHhC
Confidence 66553
No 54
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.61 E-value=2.9e-14 Score=121.59 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=83.9
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
+.+|||+|||+|.+++.+++..+ +.+|+|+|+|+.+++.|++|++.++ ++++++|..+...... ...|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~----~~~v~~vDis~~al~~A~~N~~~~~-------~~~~~~D~~~~l~~~~-~~~f 154 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD----GIELHAADIDPAAVRCARRNLADAG-------GTVHEGDLYDALPTAL-RGRV 154 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcC-------CEEEEeechhhcchhc-CCCE
Confidence 45899999999999999998753 4799999999999999999998754 3566655433211101 2369
Q ss_pred EEEEEeCCCCCCCCCcee------ec-----------hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVI------TT-----------SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~------~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|+|++|++|+|..+.... +. .+....+++.+.++|||||++++...
T Consensus 155 DlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 155 DILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred eEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 999999999886532111 11 12246888889999999999987653
No 55
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.60 E-value=7.4e-14 Score=120.10 Aligned_cols=137 Identities=14% Similarity=0.117 Sum_probs=98.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|..+..+++.++. .+.|+++|+++.+++.+++++++++ ..+++++..|..++...
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~---~g~v~a~D~~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~~--- 137 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKN---EGAIVANEFSKSRTKVLIANINRCG----VLNVAVTNFDGRVFGAA--- 137 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCC---CCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEecCCHHHhhhh---
Confidence 4578899999999999999999998754 4799999999999999999999987 46788888776554322
Q ss_pred CCcEEEEEEeCCCCCCC-----CCce--------eechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhh-HHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGG-----DKSV--------ITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREE-LEAVEAF 236 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~-----d~~~--------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~ 236 (267)
...||.|+.|++.-... .... ........++|+++.++|||||+++.+++. ...+| ...+..+
T Consensus 138 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs---~~~~Ene~vv~~~ 214 (264)
T TIGR00446 138 VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS---LEPEENEAVVDYL 214 (264)
T ss_pred ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC---CChHHHHHHHHHH
Confidence 23599999997652111 0000 001123467999999999999999877653 23334 3444555
Q ss_pred HHhC
Q 041272 237 ARSL 240 (267)
Q Consensus 237 ~~~l 240 (267)
++..
T Consensus 215 l~~~ 218 (264)
T TIGR00446 215 LEKR 218 (264)
T ss_pred HHhC
Confidence 5543
No 56
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.60 E-value=1.1e-14 Score=122.08 Aligned_cols=139 Identities=17% Similarity=0.140 Sum_probs=99.8
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
.+|||+|||+|..+..+++..+ +.+|+|+|+|+++++.|++++...+ ...+++++..+.... .. ...||
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~----~~~v~gid~s~~~~~~a~~~~~~~g---l~~~i~~~~~d~~~~---~~-~~~fD 69 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP----HLQLHGYTISPEQAEVGRERIRALG---LQGRIRIFYRDSAKD---PF-PDTYD 69 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHhcC---CCcceEEEecccccC---CC-CCCCC
Confidence 3799999999999999998863 4799999999999999999998766 456788887554322 11 23799
Q ss_pred EEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChh-------hHHHHHHHHHhCCCCceEEE
Q 041272 176 LVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGRE-------ELEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~ 248 (267)
+|++. .+.++..+...+++++.++|||||++++.++........ .......|.+.+...+|.+.
T Consensus 70 ~I~~~---------~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 70 LVFGF---------EVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred EeehH---------HHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence 99876 344445567899999999999999999987632110000 01123455555666788887
Q ss_pred EEeeec
Q 041272 249 KFQMLN 254 (267)
Q Consensus 249 ~~~~~~ 254 (267)
....+.
T Consensus 141 ~~~~~~ 146 (224)
T smart00828 141 EGVDAS 146 (224)
T ss_pred EeEECc
Confidence 766543
No 57
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.59 E-value=2.2e-14 Score=124.24 Aligned_cols=139 Identities=17% Similarity=0.214 Sum_probs=97.7
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
...+.....++.....++.+|||+|||||.+++..++. | ..+|+|+|+++.+++.|++|+..|+ ...++.+.
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G----A~~v~a~DiDp~Av~~a~~N~~~N~---~~~~~~v~ 216 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G----AKKVVAIDIDPLAVEAARENAELNG---VEDRIEVS 216 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T----BSEEEEEESSCHHHHHHHHHHHHTT----TTCEEES
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C----CCeEEEecCCHHHHHHHHHHHHHcC---CCeeEEEE
Confidence 44555666667777889999999999999999999886 3 3689999999999999999999998 44555442
Q ss_pred ecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 158 ~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
...+. . ...||+|+.|+. ..-...++..+.++|+|||+++++... .++...+.+.+
T Consensus 217 --~~~~~---~--~~~~dlvvANI~------------~~vL~~l~~~~~~~l~~~G~lIlSGIl-----~~~~~~v~~a~ 272 (295)
T PF06325_consen 217 --LSEDL---V--EGKFDLVVANIL------------ADVLLELAPDIASLLKPGGYLILSGIL-----EEQEDEVIEAY 272 (295)
T ss_dssp --CTSCT---C--CS-EEEEEEES-------------HHHHHHHHHHCHHHEEEEEEEEEEEEE-----GGGHHHHHHHH
T ss_pred --Eeccc---c--cccCCEEEECCC------------HHHHHHHHHHHHHhhCCCCEEEEcccc-----HHHHHHHHHHH
Confidence 11111 1 258999999952 133356777788999999999998773 23334444333
Q ss_pred HhCCCCceEEEEEee
Q 041272 238 RSLSVDDWICCKFQM 252 (267)
Q Consensus 238 ~~l~~~~~~~~~~~~ 252 (267)
+ + +|.+.....
T Consensus 273 ~---~-g~~~~~~~~ 283 (295)
T PF06325_consen 273 K---Q-GFELVEERE 283 (295)
T ss_dssp H---T-TEEEEEEEE
T ss_pred H---C-CCEEEEEEE
Confidence 3 3 787766554
No 58
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.59 E-value=1.5e-14 Score=123.99 Aligned_cols=104 Identities=20% Similarity=0.268 Sum_probs=82.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++.++ +.+|+|+|+|+.|++.|+++. .++.++.++..++ ..
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~----~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~---~~- 90 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWP----AARITGIDSSPAMLAEARSRL---------PDCQFVEADIASW---QP- 90 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhcc---CC-
Confidence 356788999999999999999998864 489999999999999998863 3567776655433 22
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+||+|+++. .+++.++...+++++.++|||||.+++...
T Consensus 91 ~~~fD~v~~~~---------~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 91 PQALDLIFANA---------SLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCCccEEEEcc---------ChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 34799999983 344455667999999999999999988653
No 59
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5e-14 Score=121.01 Aligned_cols=142 Identities=21% Similarity=0.297 Sum_probs=99.9
Q ss_pred hHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe
Q 041272 79 LITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN 158 (267)
Q Consensus 79 ~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~ 158 (267)
..+.....++...++++.+|||+|||+|.+++.+++. | ..+|+|+|++|.+++.|++|++.|+. ...+..-.
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL-G----A~~v~g~DiDp~AV~aa~eNa~~N~v---~~~~~~~~ 218 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL-G----AKKVVGVDIDPQAVEAARENARLNGV---ELLVQAKG 218 (300)
T ss_pred hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc-C----CceEEEecCCHHHHHHHHHHHHHcCC---chhhhccc
Confidence 3445566667777889999999999999999999976 3 36899999999999999999999882 21111111
Q ss_pred cChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHH
Q 041272 159 MCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFAR 238 (267)
Q Consensus 159 ~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 238 (267)
.+..+ .....+||+|+.|. + ..-...+...+.++|||||+++++... ....+...+
T Consensus 219 ---~~~~~-~~~~~~~DvIVANI----------L--A~vl~~La~~~~~~lkpgg~lIlSGIl--------~~q~~~V~~ 274 (300)
T COG2264 219 ---FLLLE-VPENGPFDVIVANI----------L--AEVLVELAPDIKRLLKPGGRLILSGIL--------EDQAESVAE 274 (300)
T ss_pred ---ccchh-hcccCcccEEEehh----------h--HHHHHHHHHHHHHHcCCCceEEEEeeh--------HhHHHHHHH
Confidence 11122 22235899999994 1 122347788899999999999988752 123445555
Q ss_pred hCCCCceEEEEEee
Q 041272 239 SLSVDDWICCKFQM 252 (267)
Q Consensus 239 ~l~~~~~~~~~~~~ 252 (267)
.+.+.+|.+.....
T Consensus 275 a~~~~gf~v~~~~~ 288 (300)
T COG2264 275 AYEQAGFEVVEVLE 288 (300)
T ss_pred HHHhCCCeEeEEEe
Confidence 66667787766443
No 60
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.59 E-value=9.1e-14 Score=129.52 Aligned_cols=129 Identities=19% Similarity=0.187 Sum_probs=94.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.+++.++...+ +.+|+|+|+|+.+++.|++|+..++ ...++++++++.. +... ...
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p----~~~v~avDis~~al~~A~~N~~~~~---l~~~v~~~~~D~~---~~~~-~~~ 206 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP----NANVIATDISLDAIEVAKSNAIKYE---VTDRIQIIHSNWF---ENIE-KQK 206 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC----CCeEEEEECCHHHHHHHHHHHHHcC---Cccceeeeecchh---hhCc-CCC
Confidence 346899999999999999998753 5899999999999999999998876 3457888876643 2222 347
Q ss_pred EEEEEEeCCCCCCCCCcee------ec-----------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHH
Q 041272 174 VRLVAFNLGYLPGGDKSVI------TT-----------SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAF 236 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~------~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 236 (267)
||+|++|++|++..+.... +. ......+++++.++|+|||++++... ......+...
T Consensus 207 fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig------~~q~~~v~~~ 280 (506)
T PRK01544 207 FDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG------FKQEEAVTQI 280 (506)
T ss_pred ccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC------CchHHHHHHH
Confidence 9999999999887553111 11 13356788899999999999987542 1233445555
Q ss_pred HHh
Q 041272 237 ARS 239 (267)
Q Consensus 237 ~~~ 239 (267)
+..
T Consensus 281 ~~~ 283 (506)
T PRK01544 281 FLD 283 (506)
T ss_pred HHh
Confidence 544
No 61
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.59 E-value=2.4e-14 Score=117.77 Aligned_cols=105 Identities=11% Similarity=0.114 Sum_probs=78.0
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|..+..++++ +.+|+|+|+|+.|++.+++++...+ . ++.+...+.. .... +.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~------g~~V~~iD~s~~~l~~a~~~~~~~~----~-~v~~~~~d~~---~~~~-~~ 93 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLA------GYDVRAWDHNPASIASVLDMKAREN----L-PLRTDAYDIN---AAAL-NE 93 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHhC----C-CceeEeccch---hccc-cC
Confidence 35679999999999999999986 4799999999999999999887765 2 2454443332 2111 23
Q ss_pred cEEEEEEeCCCCCCCCCceee-chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVIT-TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|+++..+ ++ .......+++++.++|||||++++..+
T Consensus 94 ~fD~I~~~~~~--------~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 94 DYDFIFSTVVF--------MFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred CCCEEEEeccc--------ccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 69999887421 11 234567899999999999999776654
No 62
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.59 E-value=2.2e-14 Score=126.50 Aligned_cols=140 Identities=17% Similarity=0.099 Sum_probs=96.5
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++.++ +.+|+++|+|++|++.|+++... .+++++.++..++ ..++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~----~~~VtgVD~S~~mL~~A~~k~~~-------~~i~~i~gD~e~l---p~~~~ 177 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKEPL-------KECKIIEGDAEDL---PFPTD 177 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHhhhc-------cCCeEEeccHHhC---CCCCC
Confidence 4678999999999999999998764 37999999999999999987642 4577777665443 23345
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhh--------HHHHHHHHHhCCCCc
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREE--------LEAVEAFARSLSVDD 244 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--------~~~~~~~~~~l~~~~ 244 (267)
.||+|+++. .+++.++...+++++.++|||||++++............ ....+++.+.+.+.+
T Consensus 178 sFDvVIs~~---------~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aG 248 (340)
T PLN02490 178 YADRYVSAG---------SIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAG 248 (340)
T ss_pred ceeEEEEcC---------hhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCC
Confidence 799999872 334444557899999999999999988654221100000 001234445555567
Q ss_pred eEEEEEeeecC
Q 041272 245 WICCKFQMLNR 255 (267)
Q Consensus 245 ~~~~~~~~~~~ 255 (267)
|..++...+..
T Consensus 249 F~~V~i~~i~~ 259 (340)
T PLN02490 249 FKDVKLKRIGP 259 (340)
T ss_pred CeEEEEEEcCh
Confidence 87776655433
No 63
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.59 E-value=7.3e-14 Score=119.26 Aligned_cols=126 Identities=19% Similarity=0.232 Sum_probs=87.7
Q ss_pred HhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc
Q 041272 88 WKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 88 ~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 167 (267)
+...+.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|++|++.++ ...++.+..+
T Consensus 113 l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g----~~~v~giDis~~~l~~A~~n~~~~~---~~~~~~~~~~-------- 176 (250)
T PRK00517 113 LEKLVLPGKTVLDVGCGSGILAIAAAKL-G----AKKVLAVDIDPQAVEAARENAELNG---VELNVYLPQG-------- 176 (250)
T ss_pred HHhhcCCCCEEEEeCCcHHHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHHcC---CCceEEEccC--------
Confidence 3334668899999999999999887764 3 2479999999999999999998876 2233443322
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEE
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWIC 247 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 247 (267)
+.+||+|++|.. ......+++++.++|||||+++++... ..+...+.. .+...+|.+
T Consensus 177 ---~~~fD~Vvani~------------~~~~~~l~~~~~~~LkpgG~lilsgi~-----~~~~~~v~~---~l~~~Gf~~ 233 (250)
T PRK00517 177 ---DLKADVIVANIL------------ANPLLELAPDLARLLKPGGRLILSGIL-----EEQADEVLE---AYEEAGFTL 233 (250)
T ss_pred ---CCCcCEEEEcCc------------HHHHHHHHHHHHHhcCCCcEEEEEECc-----HhhHHHHHH---HHHHCCCEE
Confidence 116899999842 123457889999999999999987652 122333333 334456766
Q ss_pred EEEee
Q 041272 248 CKFQM 252 (267)
Q Consensus 248 ~~~~~ 252 (267)
.+...
T Consensus 234 ~~~~~ 238 (250)
T PRK00517 234 DEVLE 238 (250)
T ss_pred EEEEE
Confidence 65433
No 64
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.59 E-value=3.3e-14 Score=127.13 Aligned_cols=113 Identities=19% Similarity=0.139 Sum_probs=85.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
+.+|||+|||+|.++..++++. |..+|+++|+|+.+++.|++|++.++.. ...+++++..+. .+.. +..+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~----P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~---l~~~-~~~~f 299 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKN----PQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNA---LSGV-EPFRF 299 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEccc---cccC-CCCCE
Confidence 4699999999999999999985 4589999999999999999999877510 023677776443 2222 22479
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|+|++|+++..... .......++++++.++|||||.++++..
T Consensus 300 DlIlsNPPfh~~~~----~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 300 NAVLCNPPFHQQHA----LTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred EEEEECcCcccCcc----CCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 99999987744321 1123456899999999999999999864
No 65
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=5.2e-14 Score=123.60 Aligned_cols=105 Identities=17% Similarity=0.191 Sum_probs=81.6
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++++|||+|||+|.++..+++..+. .++|+|+|+++++++.|+++++..+ ..++.+++++... ...
T Consensus 76 L~i~~g~~VLDIG~GtG~~a~~LA~~~~~---~g~VvgVDis~~~l~~Ar~~l~~~g----~~nV~~i~gD~~~---~~~ 145 (322)
T PRK13943 76 VGLDKGMRVLEIGGGTGYNAAVMSRVVGE---KGLVVSVEYSRKICEIAKRNVRRLG----IENVIFVCGDGYY---GVP 145 (322)
T ss_pred cCCCCCCEEEEEeCCccHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCChhh---ccc
Confidence 35678899999999999999999998753 3589999999999999999998877 4678888766433 223
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+..+||+|+.+.+. ......+.+.|+|||++++..
T Consensus 146 ~~~~fD~Ii~~~g~---------------~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 146 EFAPYDVIFVTVGV---------------DEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccCCccEEEECCch---------------HHhHHHHHHhcCCCCEEEEEe
Confidence 33469999987321 133455778999999998754
No 66
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.58 E-value=8e-14 Score=121.37 Aligned_cols=114 Identities=20% Similarity=0.272 Sum_probs=84.8
Q ss_pred HHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh
Q 041272 82 IAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH 161 (267)
Q Consensus 82 ~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~ 161 (267)
.....++.....++.+|||+|||+|.++..+++. + ..+|+|+|+++.+++.|++|+..++ ...++.+...+
T Consensus 147 ~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g----~~~V~avDid~~al~~a~~n~~~n~---~~~~~~~~~~~- 217 (288)
T TIGR00406 147 SLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G----AAKVVGIDIDPLAVESARKNAELNQ---VSDRLQVKLIY- 217 (288)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHHcC---CCcceEEEecc-
Confidence 3444444445668899999999999999888864 3 3689999999999999999998876 33455555433
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.... .+.+||+|++|+. ......++.++.++|||||+++++..
T Consensus 218 --~~~~--~~~~fDlVvan~~------------~~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 218 --LEQP--IEGKADVIVANIL------------AEVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred --cccc--cCCCceEEEEecC------------HHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1111 1347999999842 13345789999999999999998776
No 67
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.58 E-value=5.8e-14 Score=116.96 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=80.5
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..++++.+|||+|||+|+.+..+++.. .+|+++|+++++++.|++++++.+ ..+++++.++..+ ...
T Consensus 74 l~~~~~~~VLeiG~GsG~~t~~la~~~------~~v~~vd~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~---~~~ 140 (212)
T PRK00312 74 LELKPGDRVLEIGTGSGYQAAVLAHLV------RRVFSVERIKTLQWEAKRRLKQLG----LHNVSVRHGDGWK---GWP 140 (212)
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHh------CEEEEEeCCHHHHHHHHHHHHHCC----CCceEEEECCccc---CCC
Confidence 356788999999999999999888873 589999999999999999998876 4678888766532 222
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...+||+|+++... ..+.+.+.+.|+|||++++...
T Consensus 141 ~~~~fD~I~~~~~~---------------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 AYAPFDRILVTAAA---------------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCCCcCEEEEccCc---------------hhhhHHHHHhcCCCcEEEEEEc
Confidence 33579999987311 2345677899999999988664
No 68
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.58 E-value=1.2e-14 Score=117.42 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=88.9
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l 164 (267)
..+..-.+..-.+|.|+|||+|..|..|+++. |++.|+|||-|++|++.|++++ .+++|..+|..++
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw----P~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w 87 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRW----PDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTW 87 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhC----CCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhc
Confidence 33333345667899999999999999999996 5699999999999999998754 5677776555444
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.+ ..+.|++++| .++++.++..+.|..+...|.|||.+.+.....
T Consensus 88 ---~p-~~~~dllfaN---------AvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 88 ---KP-EQPTDLLFAN---------AVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred ---CC-CCccchhhhh---------hhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 32 3478999999 466677777899999999999999998876533
No 69
>PRK14968 putative methyltransferase; Provisional
Probab=99.58 E-value=8.3e-14 Score=113.41 Aligned_cols=115 Identities=23% Similarity=0.310 Sum_probs=85.5
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccc-eEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL-VKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~-v~~~~~~~~~l~~~~~~~ 171 (267)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.+++++..++ ...+ +.++..+. .+...+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~~d~---~~~~~~- 88 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN------GKKVVGVDINPYAVECAKCNAKLNN---IRNNGVEVIRSDL---FEPFRG- 88 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh------cceEEEEECCHHHHHHHHHHHHHcC---CCCcceEEEeccc---cccccc-
Confidence 57789999999999999999987 3799999999999999999998766 1112 67766543 222222
Q ss_pred CcEEEEEEeCCCCCCCCCce---------ee---chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSV---------IT---TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~---------~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..||+|++|.++.+...... .. .......+++++.++|||||.+++...
T Consensus 89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 27999999988866321110 00 123457789999999999999987664
No 70
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=3e-14 Score=118.45 Aligned_cols=114 Identities=23% Similarity=0.206 Sum_probs=94.4
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
....+....+.+|++|||.|+|+|.++..||..+++ .++|+++|+.++..+.|++|+++.+ ..+++++..+|.
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~---~G~v~tyE~r~d~~k~A~~Nl~~~~---l~d~v~~~~~Dv- 155 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGP---EGHVTTYEIREDFAKTARENLSEFG---LGDRVTLKLGDV- 155 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCC---CceEEEEEecHHHHHHHHHHHHHhc---cccceEEEeccc-
Confidence 344455567899999999999999999999998875 7999999999999999999999987 455588776444
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+...++ .||.++.|+ +++.++++.+.+.|||||.+++.++
T Consensus 156 --~~~~~~~-~vDav~LDm--------------p~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 156 --REGIDEE-DVDAVFLDL--------------PDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred --ccccccc-ccCEEEEcC--------------CChHHHHHHHHHHhCCCcEEEEEcC
Confidence 4444333 899999994 5568999999999999999977665
No 71
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.57 E-value=4.7e-14 Score=119.05 Aligned_cols=139 Identities=18% Similarity=0.200 Sum_probs=102.0
Q ss_pred HHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC
Q 041272 81 TIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC 160 (267)
Q Consensus 81 ~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~ 160 (267)
.+....+....+.||++|||.|+|+|.++..|++.+++ .++|+.+|+.++.++.|++|++.++ ...++++.+.|
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p---~G~v~t~E~~~~~~~~A~~n~~~~g---l~~~v~~~~~D 100 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGP---TGHVYTYEFREDRAEKARKNFERHG---LDDNVTVHHRD 100 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTT---TSEEEEEESSHHHHHHHHHHHHHTT---CCTTEEEEES-
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCC---CeEEEccccCHHHHHHHHHHHHHcC---CCCCceeEecc
Confidence 34555566678999999999999999999999999975 7999999999999999999999988 56789998866
Q ss_pred hh-hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcc-cCCcEEEEEEecCCCCChhhHHHHHHHHH
Q 041272 161 HS-RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL-IPGGLISMVVYVGHPGGREELEAVEAFAR 238 (267)
Q Consensus 161 ~~-~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 238 (267)
.. +... ...+..+|.|+.|+ +++..++..+.+.| ||||++++.++ ..+++.+.++
T Consensus 101 v~~~g~~-~~~~~~~DavfLDl--------------p~Pw~~i~~~~~~L~~~gG~i~~fsP--------~ieQv~~~~~ 157 (247)
T PF08704_consen 101 VCEEGFD-EELESDFDAVFLDL--------------PDPWEAIPHAKRALKKPGGRICCFSP--------CIEQVQKTVE 157 (247)
T ss_dssp GGCG--S-TT-TTSEEEEEEES--------------SSGGGGHHHHHHHE-EEEEEEEEEES--------SHHHHHHHHH
T ss_pred eeccccc-ccccCcccEEEEeC--------------CCHHHHHHHHHHHHhcCCceEEEECC--------CHHHHHHHHH
Confidence 53 1111 01134799999995 33468999999999 89999977665 3456666666
Q ss_pred hCCCCceEEE
Q 041272 239 SLSVDDWICC 248 (267)
Q Consensus 239 ~l~~~~~~~~ 248 (267)
.+...+|..+
T Consensus 158 ~L~~~gf~~i 167 (247)
T PF08704_consen 158 ALREHGFTDI 167 (247)
T ss_dssp HHHHTTEEEE
T ss_pred HHHHCCCeee
Confidence 6666667443
No 72
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.57 E-value=2.4e-13 Score=113.50 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=113.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh-hhhh-cCCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS-RMEE-IVPKS 171 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~-~l~~-~~~~~ 171 (267)
.+..+||+|||+|.+++.++..+++ ..|++||.|+.++..|.+|+++++ +.+++.+++.+.+ +... .....
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~----~~v~AiD~S~~Ai~La~eN~qr~~---l~g~i~v~~~~me~d~~~~~~l~~ 220 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQ----CTVTAIDVSKAAIKLAKENAQRLK---LSGRIEVIHNIMESDASDEHPLLE 220 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCC----ceEEEEeccHHHHHHHHHHHHHHh---hcCceEEEeccccccccccccccc
Confidence 4568999999999999999998864 999999999999999999999987 5678888765333 2222 22334
Q ss_pred CcEEEEEEeCCCCCCCCCceeec-----------------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHH
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITT-----------------SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVE 234 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~-----------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 234 (267)
.+.|++++|++|++..|....+. ......++.-+.|.|+|||.+.+...... +....+.
T Consensus 221 ~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~----~~~~lv~ 296 (328)
T KOG2904|consen 221 GKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERK----EHSYLVR 296 (328)
T ss_pred CceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccc----cCcHHHH
Confidence 68999999999999988654421 13345677888999999999988765211 1224455
Q ss_pred HHHHhCCCCce--EEEEEeeecCCCCceEEEeec
Q 041272 235 AFARSLSVDDW--ICCKFQMLNRPLAPVLVFLFK 266 (267)
Q Consensus 235 ~~~~~l~~~~~--~~~~~~~~~~~~~p~~~~~~k 266 (267)
.|...+..+.+ ..+..++.. .|.++.+.|
T Consensus 297 ~~m~s~~~d~~~~~~v~~Df~~---~~Rfv~i~r 327 (328)
T KOG2904|consen 297 IWMISLKDDSNGKAAVVSDFAG---RPRFVIIHR 327 (328)
T ss_pred HHHHhchhhccchhheeecccC---CcceEEEEe
Confidence 66666555444 334444433 477777765
No 73
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.56 E-value=2e-13 Score=115.25 Aligned_cols=113 Identities=25% Similarity=0.361 Sum_probs=87.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|..+..+++..+. ..+|+++|+++.+++.+++++...+ ...++.++..+..++. ...
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~---~~~ 119 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGK---TGEVVGLDFSEGMLAVGREKLRDLG---LSGNVEFVQGDAEALP---FPD 119 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHhhcccc---cccCeEEEecccccCC---CCC
Confidence 446789999999999999999998642 4799999999999999999987644 2356788776654432 234
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..+|+|+.+. .+++..+...+++++.++|+|||.+++.+...
T Consensus 120 ~~~D~I~~~~---------~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 120 NSFDAVTIAF---------GLRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred CCccEEEEec---------ccccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 5799998763 33445566789999999999999998876643
No 74
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.56 E-value=9.6e-14 Score=134.20 Aligned_cols=119 Identities=12% Similarity=0.105 Sum_probs=94.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccc-cceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEK-GLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~ 171 (267)
.++.+|||+|||+|.+++.+++. | ..+|++||+|+.+++.|++|++.++ .. .+++++++|..++.... .
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-G----a~~V~~vD~s~~al~~a~~N~~~ng---~~~~~v~~i~~D~~~~l~~~--~ 606 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-G----AKSTTTVDMSNTYLEWAERNFALNG---LSGRQHRLIQADCLAWLKEA--R 606 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-C----CCEEEEEeCCHHHHHHHHHHHHHhC---CCccceEEEEccHHHHHHHc--C
Confidence 35789999999999999999985 2 3579999999999999999999987 32 47999998876654322 3
Q ss_pred CcEEEEEEeCCCCCCCCC--ceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDK--SVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~--~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.+||+|++|++++..... ........+..++..+.++|+|||.+++.+..
T Consensus 607 ~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 607 EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 479999999998765432 12223456678899999999999999887664
No 75
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.56 E-value=7.9e-14 Score=121.39 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=80.0
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++++..+ . ++++...+.... .. +..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~------g~~V~avD~s~~ai~~~~~~~~~~~----l-~v~~~~~D~~~~---~~-~~~ 184 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL------GFDVTAVDINQQSLENLQEIAEKEN----L-NIRTGLYDINSA---SI-QEE 184 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcC----C-ceEEEEechhcc---cc-cCC
Confidence 3459999999999999999986 4799999999999999999998866 2 677665444322 11 347
Q ss_pred EEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|++.. +++ ..+....+++++.++|+|||++++++.
T Consensus 185 fD~I~~~~---------vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 185 YDFILSTV---------VLMFLNRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred ccEEEEcc---------hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99999873 222 235667999999999999999877654
No 76
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.2e-13 Score=118.04 Aligned_cols=110 Identities=24% Similarity=0.303 Sum_probs=85.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+|||+|||.|.+++.+++..+ ..+++.+|+|..+|+.|++|+..|+ ..+..++. .++.+.... +
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p----~~~vtmvDvn~~Av~~ar~Nl~~N~----~~~~~v~~---s~~~~~v~~--k 224 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSP----QAKLTLVDVNARAVESARKNLAANG----VENTEVWA---SNLYEPVEG--K 224 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCC----CCeEEEEecCHHHHHHHHHhHHHcC----CCccEEEE---ecccccccc--c
Confidence 456999999999999999999964 5899999999999999999999987 44434443 233332222 7
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||.|++|+|+..+. .......++++.++.+.|++||.|.|+..
T Consensus 225 fd~IisNPPfh~G~----~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 225 FDLIISNPPFHAGK----AVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccEEEeCCCccCCc----chhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 99999997653322 22334456999999999999999999988
No 77
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.55 E-value=5.1e-14 Score=124.27 Aligned_cols=107 Identities=24% Similarity=0.292 Sum_probs=82.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
..+.+|||||||+|+++..++... ...|+|+|.|+.++..++...+..+ ...+++++..+..++.. +.
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g-----~~~V~GiD~S~~~l~q~~a~~~~~~---~~~~i~~~~~d~e~lp~----~~ 188 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG-----AKLVVGIDPSQLFLCQFEAVRKLLG---NDQRAHLLPLGIEQLPA----LK 188 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-----CCEEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEeCCHHHCCC----cC
Confidence 367899999999999999999873 2479999999999987655433322 13478888876655532 44
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|++. .++++..++..+++++++.|||||.+++.+.
T Consensus 189 ~FD~V~s~---------~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 189 AFDTVFSM---------GVLYHRRSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CcCEEEEC---------ChhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 79999986 3555667778999999999999999998754
No 78
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.55 E-value=6.1e-13 Score=117.29 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=91.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.+++.+|+. +.+|+|+|+++.+++.|+++++.++ ..++++++++..++.... ...
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~------~~~V~gvD~s~~av~~A~~n~~~~~----l~~v~~~~~D~~~~~~~~--~~~ 240 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP------GMQLTGIEISAEAIACAKQSAAELG----LTNVQFQALDSTQFATAQ--GEV 240 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc------CCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEcCHHHHHHhc--CCC
Confidence 4689999999999999999986 4789999999999999999999987 468999998887654322 236
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEeee
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQML 253 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (267)
||+|+.|++.--. ...+++. ...++|+++++++|.+... .+. ++.+ .+|.+.+...+
T Consensus 241 ~D~Vv~dPPr~G~-----------~~~~~~~-l~~~~~~~ivyvsc~p~t~-----~rd----~~~l--~~y~~~~~~~~ 297 (315)
T PRK03522 241 PDLVLVNPPRRGI-----------GKELCDY-LSQMAPRFILYSSCNAQTM-----AKD----LAHL--PGYRIERVQLF 297 (315)
T ss_pred CeEEEECCCCCCc-----------cHHHHHH-HHHcCCCeEEEEECCcccc-----hhH----Hhhc--cCcEEEEEEEe
Confidence 9999999653100 0233333 3446899999998874321 111 2233 36888777776
Q ss_pred cC
Q 041272 254 NR 255 (267)
Q Consensus 254 ~~ 255 (267)
..
T Consensus 298 Dm 299 (315)
T PRK03522 298 DM 299 (315)
T ss_pred cc
Confidence 65
No 79
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.55 E-value=2.6e-13 Score=124.42 Aligned_cols=138 Identities=17% Similarity=0.210 Sum_probs=97.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.+|++|||+|||+|..+..+++..+ +++|+++|+++.+++.+++++++.+ .+++++++|..++.... .
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~----~~~v~a~D~s~~~l~~~~~n~~~~g-----~~~~~~~~D~~~~~~~~-~ 310 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAP----QAQVVALDIDAQRLERVRENLQRLG-----LKATVIVGDARDPAQWW-D 310 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcC----CCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEcCcccchhhc-c
Confidence 356889999999999999999999863 3799999999999999999999877 23677777765543322 2
Q ss_pred CCcEEEEEEeCCCCCCCC----Cce--eec-------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGGD----KSV--ITT-------SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d----~~~--~~~-------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
..+||.|++|+++..... ..+ ... .....++++.+.++|||||+++++++.-.. .+....+..++
T Consensus 311 ~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~--~Ene~~v~~~l 388 (427)
T PRK10901 311 GQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP--EENEQQIKAFL 388 (427)
T ss_pred cCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh--hhCHHHHHHHH
Confidence 347999999987643210 000 001 122467899999999999999988763222 22334556666
Q ss_pred HhC
Q 041272 238 RSL 240 (267)
Q Consensus 238 ~~l 240 (267)
+..
T Consensus 389 ~~~ 391 (427)
T PRK10901 389 ARH 391 (427)
T ss_pred HhC
Confidence 553
No 80
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.54 E-value=3.8e-13 Score=116.25 Aligned_cols=116 Identities=24% Similarity=0.277 Sum_probs=88.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.++..++...+ ..+|+|+|+|+.+++.|++++.. . ...++.++..+. ..... .
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~----~~~v~~iDis~~~l~~a~~n~~~-~---~~~~i~~~~~d~---~~~~~-~ 173 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERP----DAEVTAVDISPEALAVARRNAKH-G---LGARVEFLQGDW---FEPLP-G 173 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHh-C---CCCcEEEEEccc---cCcCC-C
Confidence 34677999999999999999999864 48999999999999999999882 2 246788887654 22221 3
Q ss_pred CcEEEEEEeCCCCCCCCCc-----ee-e-----------chhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKS-----VI-T-----------TSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~-----~~-~-----------~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..||+|++|++|++..... +. + .......+++++.++|||||++++..
T Consensus 174 ~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 174 GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4799999999998764321 10 0 12345788999999999999998854
No 81
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.54 E-value=8.6e-13 Score=118.87 Aligned_cols=127 Identities=15% Similarity=0.108 Sum_probs=94.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.+++.+|.. +.+|+|||+++.+++.|++|++.++ ..+++++.++..++.... ..+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~------~~~v~~vE~~~~av~~a~~N~~~~~----~~~~~~~~~d~~~~~~~~--~~~ 300 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP------DTQLTGIEIESEAIACAQQSAQMLG----LDNLSFAALDSAKFATAQ--MSA 300 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc------CCeEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHHHHhc--CCC
Confidence 5679999999999999999965 4689999999999999999999987 458999988876554321 125
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEeee
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQML 253 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (267)
+|+|+.|+|+- +. ...+++.+.+ ++|++++++++.+. .+..-+..+ .+|.+.....+
T Consensus 301 ~D~vi~DPPr~-G~----------~~~~l~~l~~-~~p~~ivyvsc~p~---------TlaRDl~~L--~gy~l~~~~~~ 357 (374)
T TIGR02085 301 PELVLVNPPRR-GI----------GKELCDYLSQ-MAPKFILYSSCNAQ---------TMAKDIAEL--SGYQIERVQLF 357 (374)
T ss_pred CCEEEECCCCC-CC----------cHHHHHHHHh-cCCCeEEEEEeCHH---------HHHHHHHHh--cCceEEEEEEe
Confidence 89999997752 11 1355666654 69999999998731 222223333 46888887777
Q ss_pred cC
Q 041272 254 NR 255 (267)
Q Consensus 254 ~~ 255 (267)
+.
T Consensus 358 Dm 359 (374)
T TIGR02085 358 DM 359 (374)
T ss_pred cc
Confidence 66
No 82
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.54 E-value=3.3e-13 Score=111.64 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=95.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|..+..+++..+ +.+++|||+|++|++.|+++.. ++.+++++..+ ..+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~----~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~----~~~ 102 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP----FKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFD----PFK 102 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC----CCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccC----CCC
Confidence 356778999999999999999998753 4799999999999999988642 34455544332 234
Q ss_pred CCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEecCCC---------CChhh-HHHHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYVGHP---------GGREE-LEAVEAFAR 238 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---------~~~~~-~~~~~~~~~ 238 (267)
+.+||+|+++. +++ .++...++++++.+++ ++.+++..+.... .+..- ......+++
T Consensus 103 ~~sfD~V~~~~---------vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~~~~~~y~~~~~~~~~~d~~~~~~~ 171 (204)
T TIGR03587 103 DNFFDLVLTKG---------VLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPSPVEISYRGNSGRLWKRDFAGEMMD 171 (204)
T ss_pred CCCEEEEEECC---------hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCCceeeeeeCCcchhhhhhHHHHHHH
Confidence 55899999872 332 2356689999999987 5677776653321 11111 112234444
Q ss_pred hCCCCceEEEEEeeecCCCC------ceEEEeecC
Q 041272 239 SLSVDDWICCKFQMLNRPLA------PVLVFLFKR 267 (267)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~------p~~~~~~k~ 267 (267)
..+ .++++.|.|.-+.++ +...+++|+
T Consensus 172 ~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (204)
T TIGR03587 172 RYP--DLKLVDYGFPYHRDPEFPNDDITWFLLEKR 204 (204)
T ss_pred hCC--cceeeeccceeecCCCCCCCCceEEEEecC
Confidence 433 367777766555333 336667664
No 83
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.54 E-value=1.9e-13 Score=121.41 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=83.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
..++|||+|||+|.++..++++.+ ..+|+++|+|+.|++.|+++++.++ . ..+++..+. .... ...
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p----~~~v~~vDis~~Al~~A~~nl~~n~----l-~~~~~~~D~---~~~~--~~~ 261 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSP----KIRLTLSDVSAAALESSRATLAANG----L-EGEVFASNV---FSDI--KGR 261 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcC----C-CCEEEEccc---cccc--CCC
Confidence 346899999999999999998853 4799999999999999999999876 1 234554332 2222 347
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|++|+++... .........++++++.+.|||||.++++..
T Consensus 262 fDlIvsNPPFH~g----~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 262 FDMIISNPPFHDG----IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccEEEECCCccCC----ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 9999999765321 122345678999999999999999999876
No 84
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.54 E-value=4.2e-13 Score=123.33 Aligned_cols=133 Identities=15% Similarity=0.119 Sum_probs=95.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~~ 170 (267)
+.++.+|||+|||+|.+++.+|+. ..+|+|+|+++++++.|++|++.++ ..+++++.++..+... ....
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~------~~~V~~vE~~~~av~~a~~n~~~~~----~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQ------AKSVVGIEVVPESVEKAQQNAELNG----IANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHh------CCEEEEEEcCHHHHHHHHHHHHHhC----CCceEEEeCCHHHHHHHHHhc
Confidence 456789999999999999999987 3689999999999999999999887 5789999988865432 2222
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKF 250 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (267)
+..||+|+.|++.... ...+++.+.+ ++|+++++++|.+. .+..-+..+...+|.+...
T Consensus 360 ~~~~D~vi~dPPr~G~-----------~~~~l~~l~~-l~~~~ivyvsc~p~---------tlard~~~l~~~gy~~~~~ 418 (431)
T TIGR00479 360 GQIPDVLLLDPPRKGC-----------AAEVLRTIIE-LKPERIVYVSCNPA---------TLARDLEFLCKEGYGITWV 418 (431)
T ss_pred CCCCCEEEECcCCCCC-----------CHHHHHHHHh-cCCCEEEEEcCCHH---------HHHHHHHHHHHCCeeEEEE
Confidence 3468999999754210 1466666554 79999988877521 1112222233356877776
Q ss_pred eeecC
Q 041272 251 QMLNR 255 (267)
Q Consensus 251 ~~~~~ 255 (267)
..+..
T Consensus 419 ~~~Dm 423 (431)
T TIGR00479 419 QPVDM 423 (431)
T ss_pred EEecc
Confidence 66654
No 85
>PRK06922 hypothetical protein; Provisional
Probab=99.54 E-value=8e-14 Score=130.48 Aligned_cols=116 Identities=22% Similarity=0.271 Sum_probs=87.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|..+..+++.. |+.+|+|+|+|+.|++.|++++...+ .++.+++++..++...+ ++.
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~----P~~kVtGIDIS~~MLe~Ararl~~~g-----~~ie~I~gDa~dLp~~f-ede 486 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEET----EDKRIYGIDISENVIDTLKKKKQNEG-----RSWNVIKGDAINLSSSF-EKE 486 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHHhhhcC-----CCeEEEEcchHhCcccc-CCC
Confidence 367899999999999999999875 35899999999999999999876543 46778877766654333 335
Q ss_pred cEEEEEEeCC------CCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLG------YLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~------~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+||+++++.. ++|..+. ........+++++++++|||||++++.+.
T Consensus 487 SFDvVVsn~vLH~L~syIp~~g~--~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 487 SVDTIVYSSILHELFSYIEYEGK--KFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred CEEEEEEchHHHhhhhhcccccc--cccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8999998842 1221111 01135668999999999999999999874
No 86
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.54 E-value=3.4e-13 Score=123.87 Aligned_cols=142 Identities=15% Similarity=0.189 Sum_probs=101.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-C
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-P 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~ 169 (267)
.+++|++|||+|||+|..+..+++.++. .++|+++|+++++++.+++|+++.+ ..+++++..|..++.... .
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~---~g~v~a~D~~~~rl~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~ 321 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGD---QGEIWAVDRSASRLKKLQENAQRLG----LKSIKILAADSRNLLELKPQ 321 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCC---CceEEEEcCCHHHHHHHHHHHHHcC----CCeEEEEeCChhhccccccc
Confidence 3567899999999999999999998754 4799999999999999999999988 567899887776554321 1
Q ss_pred CCCcEEEEEEeCCCC-----CCCCCceee--------chhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHH
Q 041272 170 KSTAVRLVAFNLGYL-----PGGDKSVIT--------TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAF 236 (267)
Q Consensus 170 ~~~~~d~ii~~~~~l-----p~~d~~~~~--------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 236 (267)
....||.|+.|.+.- ......... ......++++++.++|||||+++.+++.-. ..+....+..+
T Consensus 322 ~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~--~~Ene~~v~~~ 399 (434)
T PRK14901 322 WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH--PAENEAQIEQF 399 (434)
T ss_pred ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC--hhhHHHHHHHH
Confidence 234799999986531 110000000 012247889999999999999988776332 22334556677
Q ss_pred HHhCC
Q 041272 237 ARSLS 241 (267)
Q Consensus 237 ~~~l~ 241 (267)
++..+
T Consensus 400 l~~~~ 404 (434)
T PRK14901 400 LARHP 404 (434)
T ss_pred HHhCC
Confidence 77654
No 87
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.54 E-value=1.3e-13 Score=122.24 Aligned_cols=117 Identities=21% Similarity=0.150 Sum_probs=89.4
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|.++..++.. +.+|+|+|+++.|++.|++|++..+ ..+++++.+|..++. ..
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~------~~~v~g~Di~~~~~~~a~~nl~~~g----~~~i~~~~~D~~~l~---~~ 245 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLM------GAKVIGCDIDWKMVAGARINLEHYG----IEDFFVKRGDATKLP---LS 245 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHh------CCeEEEEcCCHHHHHHHHHHHHHhC----CCCCeEEecchhcCC---cc
Confidence 4678899999999999999887765 4799999999999999999999877 345777776665442 22
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+..||.|++|+||-...............++++++.++|||||++++...
T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 45799999998873321111011123468899999999999999988765
No 88
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.54 E-value=5.9e-14 Score=103.05 Aligned_cols=100 Identities=22% Similarity=0.302 Sum_probs=75.3
Q ss_pred EEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEE
Q 041272 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLV 177 (267)
Q Consensus 98 VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~i 177 (267)
|||+|||+|..+..+++.+.. .|..+++|+|+|++|++.++++....+ .++++++.|..++.. .+.+||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~-~~~~~~~gvD~s~~~l~~~~~~~~~~~-----~~~~~~~~D~~~l~~---~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA-GPSSRVIGVDISPEMLELAKKRFSEDG-----PKVRFVQADARDLPF---SDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTT-----TTSEEEESCTTCHHH---HSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhh-cccceEEEEECCHHHHHHHHHhchhcC-----CceEEEECCHhHCcc---cCCCeeEE
Confidence 799999999999999998621 123799999999999999999998755 388999888877653 34589999
Q ss_pred EEeCCCCCCCCCcee-echhhHHHHHHHHHhcccCCc
Q 041272 178 AFNLGYLPGGDKSVI-TTSETTKMALEAAERILIPGG 213 (267)
Q Consensus 178 i~~~~~lp~~d~~~~-~~~~~~~~~l~~~~~~LkpgG 213 (267)
++... .+. ...+...++++++.++|||||
T Consensus 72 ~~~~~-------~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGL-------SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TT-------GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCC-------ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 99421 122 245677899999999999998
No 89
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=1.5e-13 Score=126.68 Aligned_cols=137 Identities=16% Similarity=0.213 Sum_probs=98.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.+|.+|||+|||+|..+..+++.++. +++|+|+|+|+.+++.+++++++.+ ..++++++++..++. +
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~---~~~V~avD~s~~~l~~~~~~~~~~g----~~~v~~~~~Da~~~~----~ 315 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQN---RGQITAVDRYPQKLEKIRSHASALG----ITIIETIEGDARSFS----P 315 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHHHHhC----CCeEEEEeCcccccc----c
Confidence 3467899999999999999999988754 4799999999999999999999887 457888887665432 2
Q ss_pred CCcEEEEEEeCCCCCCC------CCc-------eeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGG------DKS-------VITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~------d~~-------~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
+..||.|+.|++..... +.. +.+......+++.++.+.|||||+++++++.-.+ .+....+..++
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~--~Ene~~v~~~l 393 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP--EENELQIEAFL 393 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh--hhHHHHHHHHH
Confidence 34799999986542211 000 0001123457899999999999999998874322 22244556676
Q ss_pred HhC
Q 041272 238 RSL 240 (267)
Q Consensus 238 ~~l 240 (267)
+..
T Consensus 394 ~~~ 396 (445)
T PRK14904 394 QRH 396 (445)
T ss_pred HhC
Confidence 654
No 90
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.53 E-value=7.7e-14 Score=119.15 Aligned_cols=101 Identities=21% Similarity=0.248 Sum_probs=78.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++... ..++.++..++ ...+.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~~~D~s~~~l~~a~~~~~~---------~~~~~~d~~~~---~~~~~~ 103 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER------GSQVTALDLSPPMLAQARQKDAA---------DHYLAGDIESL---PLATAT 103 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCCC---------CCEEEcCcccC---cCCCCc
Confidence 4679999999999999998875 47999999999999999886432 34555554433 334457
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
||+|+++. .+++..+...+++++.++|||||.++++.+.
T Consensus 104 fD~V~s~~---------~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 104 FDLAWSNL---------AVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred EEEEEECc---------hhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999984 3444556789999999999999999998764
No 91
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.53 E-value=1.1e-13 Score=121.19 Aligned_cols=108 Identities=20% Similarity=0.205 Sum_probs=81.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++++|||+|||+|+++..++... ...|+|||.|+.|+.+++...+..+ ...++.+...+.+++.. .
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g-----~~~v~GiDpS~~ml~q~~~~~~~~~---~~~~v~~~~~~ie~lp~----~ 186 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHG-----AKSLVGIDPTVLFLCQFEAVRKLLD---NDKRAILEPLGIEQLHE----L 186 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcC-----CCEEEEEcCCHHHHHHHHHHHHHhc---cCCCeEEEECCHHHCCC----C
Confidence 3567899999999999999988762 2479999999999987654332211 12467777655555432 2
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..||+|++. .++++..++..++++++++|||||.|++.+.
T Consensus 187 ~~FD~V~s~---------gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 187 YAFDTVFSM---------GVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CCcCEEEEc---------chhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 379999988 4566667778999999999999999998754
No 92
>PRK08317 hypothetical protein; Provisional
Probab=99.53 E-value=1.6e-13 Score=115.60 Aligned_cols=111 Identities=23% Similarity=0.290 Sum_probs=86.8
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+.++.+|||+|||+|.++..+++.+++ .++|+|+|+++.+++.|+++.... ..++.++..+..++. .
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~---~~~v~~~d~~~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~---~ 83 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGP---EGRVVGIDRSEAMLALAKERAAGL-----GPNVEFVRGDADGLP---F 83 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHHhhCC-----CCceEEEecccccCC---C
Confidence 35678899999999999999999998643 579999999999999999984332 357788776554322 2
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+..||+|+++. +.++..+...+++++.++|||||.+++..+
T Consensus 84 ~~~~~D~v~~~~---------~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 84 PDGSFDAVRSDR---------VLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCceEEEEec---------hhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 345799999873 444455678899999999999999998764
No 93
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=2.1e-13 Score=124.82 Aligned_cols=140 Identities=18% Similarity=0.210 Sum_probs=102.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+++|.+|||+|||+|..+..+++.++. +++|+++|+++.+++.+++++++.+ ..+++++..|..++....
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~---~g~V~a~Dis~~rl~~~~~n~~r~g----~~~v~~~~~Da~~l~~~~-- 304 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKD---QGKILAVDISREKIQLVEKHAKRLK----LSSIEIKIADAERLTEYV-- 304 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhhhhhhh--
Confidence 4568899999999999999999998754 5799999999999999999999987 457888887776654322
Q ss_pred CCcEEEEEEeCCCCCCCCCc----e-ee--------chhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGGDKS----V-IT--------TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~----~-~~--------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
+..||.|+.|.++...+... + .. ......+++.++.+.|||||+++.+++.-. ..+....+..++
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~--~eEne~vv~~fl 382 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT--KEENTEVVKRFV 382 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC--hhhCHHHHHHHH
Confidence 23699999997663332100 0 00 112447889999999999999988877422 233345556666
Q ss_pred HhCC
Q 041272 238 RSLS 241 (267)
Q Consensus 238 ~~l~ 241 (267)
+..+
T Consensus 383 ~~~~ 386 (431)
T PRK14903 383 YEQK 386 (431)
T ss_pred HhCC
Confidence 6533
No 94
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=3.7e-13 Score=124.07 Aligned_cols=138 Identities=21% Similarity=0.217 Sum_probs=96.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++.+|||+|||+|..+..+++..+. .++|+++|+++.+++.+++|+++.+ ..+++++++|..++...+.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~---~~~v~avDi~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~~~~-- 318 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKN---TGKVVALDIHEHKLKLIEENAKRLG----LTNIETKALDARKVHEKFA-- 318 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCCcccccchhc--
Confidence 567889999999999999999998743 5799999999999999999999887 4568888877655432222
Q ss_pred CcEEEEEEeCCCCCCCC------Cceeec-------hhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHH
Q 041272 172 TAVRLVAFNLGYLPGGD------KSVITT-------SETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFAR 238 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d------~~~~~~-------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 238 (267)
..||.|++|++.....- ...... .....++++++.++|||||.++.+++.-.. .+....+..+++
T Consensus 319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~--~Ene~vv~~~l~ 396 (444)
T PRK14902 319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK--EENEEVIEAFLE 396 (444)
T ss_pred ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh--hhhHHHHHHHHH
Confidence 46999999976422110 000001 112357899999999999999876553222 122334555665
Q ss_pred hC
Q 041272 239 SL 240 (267)
Q Consensus 239 ~l 240 (267)
..
T Consensus 397 ~~ 398 (444)
T PRK14902 397 EH 398 (444)
T ss_pred hC
Confidence 43
No 95
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.52 E-value=2.3e-13 Score=121.42 Aligned_cols=116 Identities=17% Similarity=0.263 Sum_probs=91.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
..+..+||||||+|.++..+|+.. |+..++|+|+++.+++.|.+++...+ ..|+.+++++...+...++ +.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~----P~~~~iGIEI~~~~i~~a~~ka~~~g----L~NV~~i~~DA~~ll~~~~-~~ 191 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNN----PNKLFIGIEIHTPSIEQVLKQIELLN----LKNLLIINYDARLLLELLP-SN 191 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHhhhhCC-CC
Confidence 356799999999999999999986 45899999999999999999998877 5789999988876655443 45
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+|.|+.+++. |+.... |..-....+++++.++|+|||.+.+.+-
T Consensus 192 s~D~I~lnFPd-PW~Kkr--HRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPV-PWDKKP--HRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCC-Cccccc--hhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 89999998643 322111 1111236899999999999999988654
No 96
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4.7e-13 Score=121.73 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=110.3
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
..++..+..++ ...++++|||+.||.|.+++.+|+.. .+|+|+|+++++++.|++|++.++ ..|++|+
T Consensus 279 ekl~~~a~~~~--~~~~~~~vlDlYCGvG~f~l~lA~~~------~~V~gvEi~~~aV~~A~~NA~~n~----i~N~~f~ 346 (432)
T COG2265 279 EKLYETALEWL--ELAGGERVLDLYCGVGTFGLPLAKRV------KKVHGVEISPEAVEAAQENAAANG----IDNVEFI 346 (432)
T ss_pred HHHHHHHHHHH--hhcCCCEEEEeccCCChhhhhhcccC------CEEEEEecCHHHHHHHHHHHHHcC----CCcEEEE
Confidence 55555555554 23577899999999999999999773 799999999999999999999998 6779999
Q ss_pred ecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 158 ~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
.++.+++.........+|.|+.|++ ..-.. +.+++.+.+. +|..++|++|.+ ..+.+-+
T Consensus 347 ~~~ae~~~~~~~~~~~~d~VvvDPP---R~G~~--------~~~lk~l~~~-~p~~IvYVSCNP---------~TlaRDl 405 (432)
T COG2265 347 AGDAEEFTPAWWEGYKPDVVVVDPP---RAGAD--------REVLKQLAKL-KPKRIVYVSCNP---------ATLARDL 405 (432)
T ss_pred eCCHHHHhhhccccCCCCEEEECCC---CCCCC--------HHHHHHHHhc-CCCcEEEEeCCH---------HHHHHHH
Confidence 9888877765545567899999953 21111 4677777765 999999999984 2344445
Q ss_pred HhCCCCceEEEEEeeecC
Q 041272 238 RSLSVDDWICCKFQMLNR 255 (267)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~ 255 (267)
..+...+|.+.+...++.
T Consensus 406 ~~L~~~gy~i~~v~~~Dm 423 (432)
T COG2265 406 AILASTGYEIERVQPFDM 423 (432)
T ss_pred HHHHhCCeEEEEEEEecc
Confidence 555566777777766654
No 97
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.52 E-value=1.7e-13 Score=123.49 Aligned_cols=105 Identities=18% Similarity=0.155 Sum_probs=81.3
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
...++++.+|||||||+|.++..+++.. +.+|+|+|+|+++++.|++++.. .++++...+..++
T Consensus 162 ~l~l~~g~rVLDIGcG~G~~a~~la~~~-----g~~V~giDlS~~~l~~A~~~~~~-------l~v~~~~~D~~~l---- 225 (383)
T PRK11705 162 KLQLKPGMRVLDIGCGWGGLARYAAEHY-----GVSVVGVTISAEQQKLAQERCAG-------LPVEIRLQDYRDL---- 225 (383)
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHHhcc-------CeEEEEECchhhc----
Confidence 3456889999999999999999999875 36999999999999999998753 2366665544332
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+..||.|++.. +.++ ......+++++.++|||||++++.+.
T Consensus 226 --~~~fD~Ivs~~---------~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 --NGQFDRIVSVG---------MFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred --CCCCCEEEEeC---------chhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 24699998762 2222 24557899999999999999998765
No 98
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.7e-12 Score=102.22 Aligned_cols=114 Identities=20% Similarity=0.334 Sum_probs=92.3
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
...+||||||+|..+..|++..++ +..+.++|+++++.+..++.++.|+ .++..++ .|+...+.+ .++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~---~~~~latDiNp~A~~~Tl~TA~~n~-----~~~~~V~---tdl~~~l~~-~~V 111 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGP---QALYLATDINPEALEATLETARCNR-----VHIDVVR---TDLLSGLRN-ESV 111 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCC---CceEEEecCCHHHHHHHHHHHHhcC-----Cccceee---hhHHhhhcc-CCc
Confidence 568999999999999999998875 7889999999999999999999876 4566665 444554444 589
Q ss_pred EEEEEeCCCCCCCCCceee------------chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVIT------------TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~------------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|++++|++|.|..+..+-. ..+-..+++.++-.+|.|.|++|++..
T Consensus 112 DvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 112 DVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred cEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 9999999999998776521 123346777788889999999999876
No 99
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.51 E-value=1.8e-12 Score=116.30 Aligned_cols=127 Identities=13% Similarity=0.174 Sum_probs=91.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC----
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK---- 170 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~---- 170 (267)
+.+|||++||+|.+++.+++.. .+|+|||+++.+++.|++|++.++ ..+++++.++..++......
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~------~~v~~vE~~~~ai~~a~~N~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~ 276 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF------RRVLATEISKPSVAAAQYNIAANG----IDNVQIIRMSAEEFTQAMNGVREF 276 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC------CEEEEEECCHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHhhcccc
Confidence 3579999999999999999873 689999999999999999999987 46899999888765332110
Q ss_pred ---------CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCC
Q 041272 171 ---------STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLS 241 (267)
Q Consensus 171 ---------~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 241 (267)
...+|+|+.|+|.- +. ..++++.+.+ |++++|++|.+ ..+..-+..+.
T Consensus 277 ~~~~~~~~~~~~~D~v~lDPPR~-G~----------~~~~l~~l~~---~~~ivyvSC~p---------~tlarDl~~L~ 333 (362)
T PRK05031 277 NRLKGIDLKSYNFSTIFVDPPRA-GL----------DDETLKLVQA---YERILYISCNP---------ETLCENLETLS 333 (362)
T ss_pred cccccccccCCCCCEEEECCCCC-CC----------cHHHHHHHHc---cCCEEEEEeCH---------HHHHHHHHHHc
Confidence 22589999997651 10 1355555544 78999998873 11222222332
Q ss_pred CCceEEEEEeeecC
Q 041272 242 VDDWICCKFQMLNR 255 (267)
Q Consensus 242 ~~~~~~~~~~~~~~ 255 (267)
. +|.+.+...+..
T Consensus 334 ~-gY~l~~v~~~Dm 346 (362)
T PRK05031 334 Q-THKVERFALFDQ 346 (362)
T ss_pred C-CcEEEEEEEccc
Confidence 2 688888777766
No 100
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.51 E-value=4.8e-13 Score=111.11 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=78.7
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c-
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I- 167 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~- 167 (267)
++++.+|||+|||+|.++..+++..+. .++|+|||+++ | .. ..+++++++|..+... +
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~---~~~V~aVDi~~-~----------~~----~~~v~~i~~D~~~~~~~~~i~ 110 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGD---KGRVIACDILP-M----------DP----IVGVDFLQGDFRDELVLKALL 110 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCC---CceEEEEeccc-c----------cC----CCCcEEEecCCCChHHHHHHH
Confidence 578899999999999999999998754 57999999998 1 11 3468888887766421 0
Q ss_pred -CCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 168 -VPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
...+..+|+|++++......+..+.. .......+++++.++|||||.+++.++.
T Consensus 111 ~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 111 ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred HHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 11245799999986332222111111 0111357899999999999999998874
No 101
>PLN02672 methionine S-methyltransferase
Probab=99.50 E-value=1.2e-12 Score=129.44 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=95.5
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc------------ccccceEEEecChh
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK------------AEKGLVKLFNMCHS 162 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~------------~~~~~v~~~~~~~~ 162 (267)
+.+|||+|||+|.+++.+++..+ ..+|+|+|+|+++++.|++|++.++.+ ....+++++++|..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~----~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~ 194 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL----PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLL 194 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchh
Confidence 46999999999999999999864 479999999999999999999876421 11247899886653
Q ss_pred hhhhcCCC-CCcEEEEEEeCCCCCCCCCcee------ec-----------------------hhhHHHHHHHHHhcccCC
Q 041272 163 RMEEIVPK-STAVRLVAFNLGYLPGGDKSVI------TT-----------------------SETTKMALEAAERILIPG 212 (267)
Q Consensus 163 ~l~~~~~~-~~~~d~ii~~~~~lp~~d~~~~------~~-----------------------~~~~~~~l~~~~~~Lkpg 212 (267)
+.... +.+||+|++|++|++..+...+ +. ...+++++.++.++|+||
T Consensus 195 ---~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pg 271 (1082)
T PLN02672 195 ---GYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPM 271 (1082)
T ss_pred ---hhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCC
Confidence 32222 2369999999999987653211 00 122478888999999999
Q ss_pred cEEEEEEecCCCCChhhHHHHH-HHHHh
Q 041272 213 GLISMVVYVGHPGGREELEAVE-AFARS 239 (267)
Q Consensus 213 G~l~i~~~~~~~~~~~~~~~~~-~~~~~ 239 (267)
|++++.... ...+.+. +.++.
T Consensus 272 G~l~lEiG~------~q~~~v~~~l~~~ 293 (1082)
T PLN02672 272 GIMIFNMGG------RPGQAVCERLFER 293 (1082)
T ss_pred CEEEEEECc------cHHHHHHHHHHHH
Confidence 999875542 2345555 35554
No 102
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.50 E-value=1.2e-12 Score=119.94 Aligned_cols=141 Identities=18% Similarity=0.180 Sum_probs=95.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.+|.+|||+|||+|..+..+++.++ +++|+++|+++++++.+++|+++.+ ...++.+..++....... .+
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~----~~~v~a~D~~~~~l~~~~~n~~r~g---~~~~v~~~~~d~~~~~~~-~~ 306 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAP----QAQVVALDIHEHRLKRVYENLKRLG---LTIKAETKDGDGRGPSQW-AE 306 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcC----CCeEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEecccccccccc-cc
Confidence 456789999999999999999999874 3799999999999999999999877 222333354443222211 13
Q ss_pred CCcEEEEEEeCCCCCCCC----Cce-e--------echhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGYLPGGD----KSV-I--------TTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d----~~~-~--------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
..+||.|+.|.+.-..+- ..+ . .......++|+++.++|||||+++++++.-.+ .+....+..++
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~--~Ene~~v~~~l 384 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP--EENSEQIKAFL 384 (426)
T ss_pred ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh--hhCHHHHHHHH
Confidence 457999999865422210 000 0 01123478999999999999999988774322 23344556676
Q ss_pred HhCC
Q 041272 238 RSLS 241 (267)
Q Consensus 238 ~~l~ 241 (267)
+..+
T Consensus 385 ~~~~ 388 (426)
T TIGR00563 385 QEHP 388 (426)
T ss_pred HhCC
Confidence 6554
No 103
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.50 E-value=4.5e-13 Score=111.43 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=78.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcc--------ccccccceEEEecChhhh
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT--------SKAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~--------~~~~~~~v~~~~~~~~~l 164 (267)
.++.+|||+|||.|..+..||++ +.+|+|||+|+.+++.+.+...... ......+++++++|..++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 57789999999999999999987 5799999999999998644221100 000124677777666544
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.... ...||.|+-...+ ++..++....+++.+.++|||||++++.++.
T Consensus 107 ~~~~--~~~fD~i~D~~~~-------~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 107 TAAD--LGPVDAVYDRAAL-------IALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred Cccc--CCCcCEEEechhh-------ccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 3211 1357777654211 1113456678999999999999987777653
No 104
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.49 E-value=8.4e-13 Score=106.27 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=76.6
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
-.++||+|||.|.+|..||.++ .+++++|+|+.+++.|++++.. ..+|++++.+. ....+ ...|
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC------d~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dv---p~~~P-~~~F 107 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC------DRLLAVDISPRALARARERLAG------LPHVEWIQADV---PEFWP-EGRF 107 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE------EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-T---TT----SS-E
T ss_pred cceeEecCCCccHHHHHHHHhh------CceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcC---CCCCC-CCCe
Confidence 3689999999999999999995 5899999999999999999986 46899987554 44333 4589
Q ss_pred EEEEEeCCCCCCCCCceee---chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVIT---TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|+|+.. .+.+ ..++...+++.+.+.|+|||.+++-.+
T Consensus 108 DLIV~S---------EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 108 DLIVLS---------EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EEEEEE---------S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eEEEEe---------hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999887 2332 235677899999999999999998765
No 105
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.49 E-value=4.4e-13 Score=113.18 Aligned_cols=109 Identities=12% Similarity=0.172 Sum_probs=88.7
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-C-
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-P- 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~- 169 (267)
+.+..+|||+|||+|+.++.++..++. +++|+++|+++++++.|++++++++ ...+++++.++..+....+ .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~---~g~v~tiD~d~~~~~~A~~n~~~~g---l~~~i~~~~gda~~~L~~l~~~ 139 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPE---DGRITAIDIDKEAYEVGLEFIKKAG---VDHKINFIQSDALSALDQLLNN 139 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEccHHHHHHHHHhC
Confidence 446789999999999999999988764 6899999999999999999999988 4578999998887654322 1
Q ss_pred -CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 170 -KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 170 -~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
+..+||+|+.+.. .+.+..+++.+.++|+|||++++.
T Consensus 140 ~~~~~fD~VfiDa~------------k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 140 DPKPEFDFAFVDAD------------KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCCCCCEEEECCC------------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 1347999998831 245568899999999999998764
No 106
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.49 E-value=5.4e-13 Score=108.29 Aligned_cols=106 Identities=17% Similarity=0.239 Sum_probs=77.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
+..++||+|||.|+.++.||++ +..|+++|+|+.+++.+++.+++.+ -.++....| +.+...+ ..
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~------G~~VtAvD~s~~al~~l~~~a~~~~-----l~i~~~~~D---l~~~~~~-~~ 94 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ------GFDVTAVDISPVALEKLQRLAEEEG-----LDIRTRVAD---LNDFDFP-EE 94 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT------T-EEEEEESSHHHHHHHHHHHHHTT------TEEEEE-B---GCCBS-T-TT
T ss_pred CCCcEEEcCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHhhcC-----ceeEEEEec---chhcccc-CC
Confidence 4679999999999999999998 6899999999999999999887766 236655533 3333332 37
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+|+|++.... ....++...++++++.+.++|||+++++++.
T Consensus 95 yD~I~st~v~-------~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 95 YDFIVSTVVF-------MFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEEEEEESSG-------GGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred cCEEEEEEEe-------ccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 9999886211 0113556678999999999999999987663
No 107
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.49 E-value=3e-13 Score=107.04 Aligned_cols=99 Identities=20% Similarity=0.274 Sum_probs=76.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.++..+++. +.+|+|+|+++.+++. .. .....+. .. .....+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~~~g~D~~~~~~~~------~~-----~~~~~~~---~~---~~~~~~ 76 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR------GFEVTGVDISPQMIEK------RN-----VVFDNFD---AQ---DPPFPD 76 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT------TSEEEEEESSHHHHHH------TT-----SEEEEEE---CH---THHCHS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHhh------hh-----hhhhhhh---hh---hhhccc
Confidence 567889999999999999999776 3699999999999988 10 1111111 11 111234
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..||+|+++ .++++.+++..+++++.++|||||++++.+...
T Consensus 77 ~~fD~i~~~---------~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 77 GSFDLIICN---------DVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp SSEEEEEEE---------SSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cchhhHhhH---------HHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 589999999 577777789999999999999999999998753
No 108
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.48 E-value=5e-13 Score=112.71 Aligned_cols=103 Identities=25% Similarity=0.400 Sum_probs=81.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+|||+|||+|.++..+++..+ ..+++|+|+++++++.++++.. .++.++.++..+. ..++..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~----~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~---~~~~~~ 98 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFP----QAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKL---PLEDSS 98 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCC----CCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhC---CCCCCc
Confidence 457999999999999999998853 4789999999999999988653 3567777655443 223457
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|+++. +.++..+...+++++.++|||||.+++..+
T Consensus 99 fD~vi~~~---------~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 99 FDLIVSNL---------ALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred eeEEEEhh---------hhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 99999983 445555677899999999999999998875
No 109
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.47 E-value=3.7e-12 Score=106.31 Aligned_cols=109 Identities=23% Similarity=0.357 Sum_probs=85.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|..+..+++..+. ..+++++|+++.+++.++++.. . ..++.++.++..++. .+.
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~---~~~~~~iD~~~~~~~~~~~~~~--~----~~~i~~~~~d~~~~~---~~~ 104 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPD---RGKVTGVDFSSEMLEVAKKKSE--L----PLNIEFIQADAEALP---FED 104 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCC---CceEEEEECCHHHHHHHHHHhc--c----CCCceEEecchhcCC---CCC
Confidence 346889999999999999999988642 2689999999999999998875 1 356778776654432 234
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..||+|+++. ..++..+...+++++.+.|+|||++++..+.
T Consensus 105 ~~~D~i~~~~---------~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 105 NSFDAVTIAF---------GLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CcEEEEEEee---------eeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 5799998873 3344556779999999999999999987764
No 110
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.46 E-value=1.6e-12 Score=113.92 Aligned_cols=116 Identities=18% Similarity=0.154 Sum_probs=81.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++.+|||+|||+|..+..+++.+.. +.+|+|+|+|++|++.|++++.... ...++.++++|..+.......
T Consensus 60 ~~~~~~~iLELGcGtG~~t~~Ll~~l~~---~~~~~~iDiS~~mL~~a~~~l~~~~---p~~~v~~i~gD~~~~~~~~~~ 133 (301)
T TIGR03438 60 ATGAGCELVELGSGSSRKTRLLLDALRQ---PARYVPIDISADALKESAAALAADY---PQLEVHGICADFTQPLALPPE 133 (301)
T ss_pred hhCCCCeEEecCCCcchhHHHHHHhhcc---CCeEEEEECCHHHHHHHHHHHHhhC---CCceEEEEEEcccchhhhhcc
Confidence 3567789999999999999999988642 3689999999999999999987632 123466677776554333222
Q ss_pred C--CcEEEEEEeCCCCCCCCCcee-echhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 S--TAVRLVAFNLGYLPGGDKSVI-TTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~--~~~d~ii~~~~~lp~~d~~~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. .+..++++.. .+. ..+++..++++++++.|+|||.+++...
T Consensus 134 ~~~~~~~~~~~gs--------~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 134 PAAGRRLGFFPGS--------TIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred cccCCeEEEEecc--------cccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 1 1233333321 111 1355677999999999999999987553
No 111
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.44 E-value=1.2e-11 Score=110.56 Aligned_cols=126 Identities=13% Similarity=0.193 Sum_probs=89.6
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-C-----
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-P----- 169 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~----- 169 (267)
.+|||+|||+|.+++.+++.. .+|+|||+++++++.|++|++.++ ..+++++.++..++.... .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~------~~v~~vE~~~~av~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~ 268 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF------RRVLATEIAKPSVNAAQYNIAANN----IDNVQIIRMSAEEFTQAMNGVREFR 268 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC------CEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEEcCHHHHHHHHhhccccc
Confidence 479999999999999999874 589999999999999999999987 568999998887654321 0
Q ss_pred --C-----CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCC
Q 041272 170 --K-----STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSV 242 (267)
Q Consensus 170 --~-----~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (267)
. ...+|+|+.|+|. .+ -...+++.+. +|++++|++|.+ ..+..-+..+..
T Consensus 269 ~~~~~~~~~~~~d~v~lDPPR--~G---------~~~~~l~~l~---~~~~ivYvsC~p---------~tlaRDl~~L~~ 325 (353)
T TIGR02143 269 RLKGIDLKSYNCSTIFVDPPR--AG---------LDPDTCKLVQ---AYERILYISCNP---------ETLKANLEQLSE 325 (353)
T ss_pred cccccccccCCCCEEEECCCC--CC---------CcHHHHHHHH---cCCcEEEEEcCH---------HHHHHHHHHHhc
Confidence 1 1237999999753 11 0135555554 479999999873 122222333332
Q ss_pred CceEEEEEeeecC
Q 041272 243 DDWICCKFQMLNR 255 (267)
Q Consensus 243 ~~~~~~~~~~~~~ 255 (267)
+|.+.....++.
T Consensus 326 -~Y~l~~v~~~Dm 337 (353)
T TIGR02143 326 -THRVERFALFDQ 337 (353)
T ss_pred -CcEEEEEEEccc
Confidence 288888777766
No 112
>PRK05785 hypothetical protein; Provisional
Probab=99.44 E-value=2.3e-12 Score=108.37 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=71.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||||..+..+++.. +.+|+|+|+|++|++.|+++. .+++++.. ....++.
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-----~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~---~lp~~d~ 109 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-----KYYVVALDYAENMLKMNLVAD------------DKVVGSFE---ALPFRDK 109 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-----CCEEEEECCCHHHHHHHHhcc------------ceEEechh---hCCCCCC
Confidence 457899999999999999999874 268999999999999998631 12444443 3344566
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG 212 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg 212 (267)
+||+|++.. .+++.++..++++++.|+|||.
T Consensus 110 sfD~v~~~~---------~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 110 SFDVVMSSF---------ALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CEEEEEecC---------hhhccCCHHHHHHHHHHHhcCc
Confidence 899999984 3445567789999999999994
No 113
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.44 E-value=1.4e-12 Score=107.63 Aligned_cols=108 Identities=15% Similarity=0.206 Sum_probs=88.8
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-cCCC-
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-IVPK- 170 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~~~~- 170 (267)
....+||||||++|+.++.+|+.++. +++|+.+|++++..+.|++++++.+ ...+++++.++..+... +...
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~---~g~i~tiE~~~~~~~~A~~~~~~ag---~~~~I~~~~gda~~~l~~l~~~~ 117 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPE---DGKITTIEIDPERAEIARENFRKAG---LDDRIEVIEGDALEVLPELANDG 117 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTT---TSEEEEEESSHHHHHHHHHHHHHTT---GGGGEEEEES-HHHHHHHHHHTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcc---cceEEEecCcHHHHHHHHHHHHhcC---CCCcEEEEEeccHhhHHHHHhcc
Confidence 35569999999999999999998875 6899999999999999999999988 56799999988876544 2222
Q ss_pred -CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 171 -STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 171 -~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
..+||+|+.+. ....+..+++.+.++|+|||.+++-
T Consensus 118 ~~~~fD~VFiDa------------~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 118 EEGQFDFVFIDA------------DKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp TTTSEEEEEEES------------TGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCceeEEEEcc------------cccchhhHHHHHhhhccCCeEEEEc
Confidence 24799999983 2456788999999999999999774
No 114
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.44 E-value=1.2e-12 Score=113.19 Aligned_cols=98 Identities=21% Similarity=0.350 Sum_probs=73.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+|||+|||+|.++..+++.++. ....+|+|+|+|+.|++.|+++. .++.+..++..++ ..++.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~l---p~~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPE-ITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRL---PFADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhccc-ccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccC---CCcCCc
Confidence 4578999999999999999987642 01247999999999999997742 4566766554433 334568
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|++.+. ...++++.|+|||||+++++.+
T Consensus 152 fD~I~~~~~----------------~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 152 LDAIIRIYA----------------PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred eeEEEEecC----------------CCCHHHHHhhccCCCEEEEEeC
Confidence 999998631 1346789999999999998765
No 115
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.43 E-value=5.8e-12 Score=112.56 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=91.4
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
..+.+.+..++. ..++ +|||+.||.|.+++.||+.. .+|+|||+++++++.|++|++.++ ..|++|+
T Consensus 183 ~~l~~~~~~~l~--~~~~-~vlDlycG~G~fsl~la~~~------~~V~gvE~~~~av~~A~~Na~~N~----i~n~~f~ 249 (352)
T PF05958_consen 183 EKLYEQALEWLD--LSKG-DVLDLYCGVGTFSLPLAKKA------KKVIGVEIVEEAVEDARENAKLNG----IDNVEFI 249 (352)
T ss_dssp HHHHHHHHHHCT--T-TT-EEEEES-TTTCCHHHHHCCS------SEEEEEES-HHHHHHHHHHHHHTT------SEEEE
T ss_pred HHHHHHHHHHhh--cCCC-cEEEEeecCCHHHHHHHhhC------CeEEEeeCCHHHHHHHHHHHHHcC----CCcceEE
Confidence 555555555442 2334 89999999999999999884 789999999999999999999998 7899999
Q ss_pred ecChhhhhhcC-------------CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 158 NMCHSRMEEIV-------------PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 158 ~~~~~~l~~~~-------------~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
.++.+++.... .....+|.++.|+|= .-.. ..+++.+. ++.-++|++|.+.
T Consensus 250 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR---~G~~--------~~~~~~~~---~~~~ivYvSCnP~-- 313 (352)
T PF05958_consen 250 RGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPR---AGLD--------EKVIELIK---KLKRIVYVSCNPA-- 313 (352)
T ss_dssp E--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---T---T-SC--------HHHHHHHH---HSSEEEEEES-HH--
T ss_pred EeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCC---CCch--------HHHHHHHh---cCCeEEEEECCHH--
Confidence 87766543211 113368999999532 1111 24444443 3456888888731
Q ss_pred CChhhHHHHHHHHHhCCCCceEEEEEeeecC-C---CCceEEEeecC
Q 041272 225 GGREELEAVEAFARSLSVDDWICCKFQMLNR-P---LAPVLVFLFKR 267 (267)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~---~~p~~~~~~k~ 267 (267)
.-.+-+ ..+. .+|.+.....+.. + .-..++++.||
T Consensus 314 ---tlaRDl----~~L~-~~y~~~~v~~~DmFP~T~HvE~v~lL~rk 352 (352)
T PF05958_consen 314 ---TLARDL----KILK-EGYKLEKVQPVDMFPQTHHVETVALLERK 352 (352)
T ss_dssp ---HHHHHH----HHHH-CCEEEEEEEEE-SSTTSS--EEEEEEEE-
T ss_pred ---HHHHHH----HHHh-hcCEEEEEEEeecCCCCCcEEEEEEEEeC
Confidence 112222 2222 2698888888776 3 23356666654
No 116
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.42 E-value=5e-12 Score=104.47 Aligned_cols=108 Identities=19% Similarity=0.185 Sum_probs=88.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe-cChhhhhhcCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN-MCHSRMEEIVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~~ 170 (267)
+.+..+|||||++.|+.++.||..++. +++++++|+++++.+.|++|+++.+ ...+++++. ++..+..+- ..
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag---~~~~i~~~~~gdal~~l~~-~~ 129 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAG---VDDRIELLLGGDALDVLSR-LL 129 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCC---CCeEEEEeCCHHHHHHHHHHHHHcC---CcceEEEEecCcHHHHHHh-cc
Confidence 457789999999999999999999875 5899999999999999999999998 566688887 355544332 22
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
..+||+|+.+. ....+.++++.+.++|+|||++++-
T Consensus 130 ~~~fDliFIDa------------dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 130 DGSFDLVFIDA------------DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred CCCccEEEEeC------------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 45899999883 2456689999999999999999774
No 117
>PLN02476 O-methyltransferase
Probab=99.42 E-value=5e-12 Score=108.38 Aligned_cols=108 Identities=12% Similarity=0.203 Sum_probs=89.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-C--
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-P-- 169 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~-- 169 (267)
.+..+|||||||+|+.++.+|+.+++ +++|+++|.+++..+.|++++++.| ...+++++.++..+....+ .
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~---~G~V~TiE~d~e~~~~Ar~n~~~aG---l~~~I~li~GdA~e~L~~l~~~~ 190 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPE---SGCLVACERDSNSLEVAKRYYELAG---VSHKVNVKHGLAAESLKSMIQNG 190 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhcc
Confidence 45789999999999999999998765 6789999999999999999999988 5678999998887654322 1
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
...+||+|+.+.. ...+..+++.+.++|+|||.+++-
T Consensus 191 ~~~~FD~VFIDa~------------K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 191 EGSSYDFAFVDAD------------KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred cCCCCCEEEECCC------------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 1247999999831 356788999999999999999774
No 118
>PRK04457 spermidine synthase; Provisional
Probab=99.42 E-value=3.4e-12 Score=109.53 Aligned_cols=116 Identities=6% Similarity=0.125 Sum_probs=86.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
++..+|||||||+|.++..+++..+ +.+|+++|+++++++.|++++...+ ...+++++.+|..+...... .
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p----~~~v~~VEidp~vi~~A~~~f~~~~---~~~rv~v~~~Da~~~l~~~~--~ 135 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP----DTRQTAVEINPQVIAVARNHFELPE---NGERFEVIEADGAEYIAVHR--H 135 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHcCCCC---CCCceEEEECCHHHHHHhCC--C
Confidence 4567999999999999999998854 5899999999999999999876543 24689999888766544322 3
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.||+|+.|... .. .. ...-...++++++.+.|+|||++++..+..
T Consensus 136 ~yD~I~~D~~~---~~-~~-~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 136 STDVILVDGFD---GE-GI-IDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCEEEEeCCC---CC-CC-ccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 69999998411 00 00 000123689999999999999999876643
No 119
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.42 E-value=4.5e-12 Score=111.42 Aligned_cols=108 Identities=13% Similarity=0.088 Sum_probs=83.6
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++++.+|||+|||+|.++..++++. |+.+++++|. +.+++.+++++.+.+ ..++++++.+|..+. ..+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~----p~~~~~~~D~-~~~~~~a~~~~~~~g---l~~rv~~~~~d~~~~---~~~- 214 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHF----PELDSTILNL-PGAIDLVNENAAEKG---VADRMRGIAVDIYKE---SYP- 214 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHC----CCCEEEEEec-HHHHHHHHHHHHhCC---ccceEEEEecCccCC---CCC-
Confidence 4677899999999999999999985 4589999997 789999999998877 456899988665321 112
Q ss_pred CcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.+|+++.. .++|. .+...++++++++.|||||++++.++.
T Consensus 215 -~~D~v~~~---------~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 215 -EADAVLFC---------RILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred -CCCEEEeE---------hhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 24777655 23332 234468999999999999999998763
No 120
>PLN03075 nicotianamine synthase; Provisional
Probab=99.42 E-value=3.1e-12 Score=110.31 Aligned_cols=109 Identities=12% Similarity=0.088 Sum_probs=82.6
Q ss_pred CCCEEEEecCCCChH-HHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhh-ccccccccceEEEecChhhhhhcCCCC
Q 041272 94 KGDTVVDATCGNGYD-TLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK-TTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~-~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~-~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+..+|+|||||.|.+ ++.++.... |+++++|+|+++++++.|++.++. .+ +..+++|..++..+.. ...
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~---p~~~~~giD~d~~ai~~Ar~~~~~~~g---L~~rV~F~~~Da~~~~---~~l 193 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHL---PTTSFHNFDIDPSANDVARRLVSSDPD---LSKRMFFHTADVMDVT---ESL 193 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHHhhhccC---ccCCcEEEECchhhcc---ccc
Confidence 678999999997744 444554432 468999999999999999999964 44 4578999987775532 223
Q ss_pred CcEEEEEEeCCCCCCCCCceee-chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVIT-TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..||+|++.. ++. ..+++.++++++.+.|+|||.+++-..
T Consensus 194 ~~FDlVF~~A---------Li~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 194 KEYDVVFLAA---------LVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred CCcCEEEEec---------ccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 4799999882 222 236778999999999999999988653
No 121
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.41 E-value=2.5e-12 Score=105.54 Aligned_cols=117 Identities=16% Similarity=0.169 Sum_probs=87.2
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
...+||||||.|.+...+|+.. |+..++|||++...+..|.+++...+ ..|+.++++++..+.....++.++
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~----Pd~n~iGiE~~~~~v~~a~~~~~~~~----l~Nv~~~~~da~~~l~~~~~~~~v 89 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN----PDINFIGIEIRKKRVAKALRKAEKRG----LKNVRFLRGDARELLRRLFPPGSV 89 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS----TTSEEEEEES-HHHHHHHHHHHHHHT----TSSEEEEES-CTTHHHHHSTTTSE
T ss_pred CCeEEEecCCCCHHHHHHHHHC----CCCCEEEEecchHHHHHHHHHHHhhc----ccceEEEEccHHHHHhhcccCCch
Confidence 3499999999999999999985 56999999999999999999999887 799999999888755544445689
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|.|..+++- |.+.....-..-....+++.+.++|+|||.+.+.+-
T Consensus 90 ~~i~i~FPD-PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 90 DRIYINFPD-PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp EEEEEES------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred heEEEeCCC-CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 999999654 222111110111236899999999999999988764
No 122
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=99.41 E-value=2e-11 Score=105.71 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=71.4
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.+++.+||++||.|..+..+++.+++ .++|+|+|.+++|++.|++++.. . .++++++++..++......
T Consensus 16 ~~~pg~~vlD~TlG~GGhS~~il~~~~~---~g~VigiD~D~~al~~ak~~L~~-~-----~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 16 AIKPDGIYVDGTFGGGGHSRAILERLGP---KGRLIAIDRDPDAIAAAKDRLKP-F-----GRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred CCCCCCEEEEeCcCChHHHHHHHHhCCC---CCEEEEEcCCHHHHHHHHHhhcc-C-----CcEEEEeCCHHHHHHHHHc
Confidence 3568889999999999999999998753 58999999999999999998765 2 5899999999988776544
Q ss_pred C-CcEEEEEEeCCC
Q 041272 171 S-TAVRLVAFNLGY 183 (267)
Q Consensus 171 ~-~~~d~ii~~~~~ 183 (267)
+ ..+|.|++|+|.
T Consensus 87 ~~~~vDgIl~DLGv 100 (296)
T PRK00050 87 GLGKVDGILLDLGV 100 (296)
T ss_pred CCCccCEEEECCCc
Confidence 1 269999999987
No 123
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.41 E-value=8.1e-12 Score=111.75 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=104.6
Q ss_pred HHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh
Q 041272 86 GVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME 165 (267)
Q Consensus 86 ~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~ 165 (267)
..+...++ |++|||+-|-||.++..+|.. | ..+|++||+|..+++.|++|++.|+. ...++.++++|...+.
T Consensus 210 ~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~g-G----A~~vt~VD~S~~al~~a~~N~~LNg~--~~~~~~~i~~Dvf~~l 281 (393)
T COG1092 210 RALGELAA-GKRVLNLFSYTGGFSVHAALG-G----ASEVTSVDLSKRALEWARENAELNGL--DGDRHRFIVGDVFKWL 281 (393)
T ss_pred HHHhhhcc-CCeEEEecccCcHHHHHHHhc-C----CCceEEEeccHHHHHHHHHHHHhcCC--CccceeeehhhHHHHH
Confidence 33444455 999999999999999999975 1 34999999999999999999999982 2356789998887665
Q ss_pred hc-CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCC
Q 041272 166 EI-VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPG 225 (267)
Q Consensus 166 ~~-~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 225 (267)
.. ...+.+||+|+.|+|..-...........++..++..+.++|+|||.++++.+..+..
T Consensus 282 ~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 282 RKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred HHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 53 3445589999999887666555544455677899999999999999999888765543
No 124
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.40 E-value=1.5e-12 Score=104.59 Aligned_cols=107 Identities=19% Similarity=0.238 Sum_probs=85.0
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceE-EEecChhhhhhcCCCCCcE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVK-LFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~~~~~~~ 174 (267)
..|||+|||||..-...--. |+..|+++|.++.|-+.|.+.++++. ..++. |+.++.+++.++ ++.++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~-----p~~svt~lDpn~~mee~~~ks~~E~k----~~~~~~fvva~ge~l~~l--~d~s~ 146 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK-----PINSVTCLDPNEKMEEIADKSAAEKK----PLQVERFVVADGENLPQL--ADGSY 146 (252)
T ss_pred cceEEecccCCCCcccccCC-----CCceEEEeCCcHHHHHHHHHHHhhcc----CcceEEEEeechhcCccc--ccCCe
Confidence 46899999999765443321 46899999999999999999998875 56666 787777777665 46789
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
|.|+..+ ++-..+++.+.|++..|+|+|||++++.....
T Consensus 147 DtVV~Tl---------vLCSve~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 147 DTVVCTL---------VLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred eeEEEEE---------EEeccCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 9999985 33445677899999999999999999887643
No 125
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.40 E-value=3.5e-12 Score=104.27 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=74.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh-----
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME----- 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~----- 165 (267)
.++++.+|||+|||+|.++..+++.... .++|+|+|+|+.+ . ..++++++.+..+..
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~---~~~v~~vDis~~~---------~------~~~i~~~~~d~~~~~~~~~l 90 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGG---KGRVIAVDLQPMK---------P------IENVDFIRGDFTDEEVLNKI 90 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCC---CceEEEEeccccc---------c------CCCceEEEeeCCChhHHHHH
Confidence 4678999999999999999999987643 4789999999865 1 134666665543321
Q ss_pred -hcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 -EIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 -~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
... ....||+|+++....-.......+ .......+++++.++|+|||++++..+
T Consensus 91 ~~~~-~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 91 RERV-GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHh-CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 112 234699999874210001001111 123357899999999999999998765
No 126
>PRK06202 hypothetical protein; Provisional
Probab=99.40 E-value=2.5e-12 Score=108.53 Aligned_cols=107 Identities=12% Similarity=0.103 Sum_probs=74.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++......++.+|+|+|+|++|++.|+++.... ++.+...+..++.. .+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~~~~~~~~~l~~---~~~ 128 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-------GVTFRQAVSDELVA---EGE 128 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-------CCeEEEEecccccc---cCC
Confidence 45679999999999999999875422112469999999999999999876542 34444433333322 345
Q ss_pred cEEEEEEeCCCCCCCCCceeechh--hHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSE--TTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+||+|+++. ++++.+ ...++++++.++++ |.+++.+.
T Consensus 129 ~fD~V~~~~---------~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 129 RFDVVTSNH---------FLHHLDDAEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred CccEEEECC---------eeecCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence 899999984 344333 24689999999988 55555554
No 127
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.39 E-value=3.1e-12 Score=119.05 Aligned_cols=106 Identities=21% Similarity=0.169 Sum_probs=79.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.++..+++.. .+|+|+|++++|++.+++... ...++.+++.+..+.. ...++.
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~------~~v~giD~s~~~l~~a~~~~~------~~~~i~~~~~d~~~~~-~~~~~~ 102 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA------GQVIALDFIESVIKKNESING------HYKNVKFMCADVTSPD-LNISDG 102 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC------CEEEEEeCCHHHHHHHHHHhc------cCCceEEEEecccccc-cCCCCC
Confidence 356799999999999999999873 689999999999988765322 1357888876654321 122345
Q ss_pred cEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+||+|+++.. .++ .+...++++++.++|||||++++.+.
T Consensus 103 ~fD~I~~~~~---------l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 103 SVDLIFSNWL---------LMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CEEEEehhhh---------HHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 7999999842 222 23357899999999999999998764
No 128
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.38 E-value=7.3e-12 Score=104.79 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=77.5
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.++.+|||+|||+|.++..++.. +.+|+|+|+|++|++.|++++...+ ...++.+...+..++.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~------~~~v~gvD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~------ 117 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR------GAIVKAVDISEQMVQMARNRAQGRD---VAGNVEFEVNDLLSLC------ 117 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChhhCC------
Confidence 346789999999999999999976 3689999999999999999987755 2347888876654432
Q ss_pred CcEEEEEEeCCCCCCCCCceeec-hhhHHHHHHHHHhcccCCcEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITT-SETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
.+||+|++... +.+. .+....+++++.+++++++++.+
T Consensus 118 ~~fD~ii~~~~--------l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 118 GEFDIVVCMDV--------LIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred CCcCEEEEhhH--------HHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 36999987621 1221 24567889999999887666543
No 129
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.38 E-value=2.3e-11 Score=99.94 Aligned_cols=107 Identities=16% Similarity=0.088 Sum_probs=80.0
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.++.+|||+|||+|.+++.++.+. ..+|+++|+++.+++.+++|++.++ ..+++++++|....... ...
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-----a~~V~~vE~~~~a~~~a~~Nl~~~~----~~~v~~~~~D~~~~l~~--~~~ 120 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-----AAGATLLEMDRAVAQQLIKNLATLK----AGNARVVNTNALSFLAQ--PGT 120 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEEEchHHHHHhh--cCC
Confidence 457899999999999998755442 3699999999999999999999887 45789988776543321 123
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHh--cccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAER--ILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~ 220 (267)
.||+|++|+||.... ..++++.+.+ +|+|+|++++...
T Consensus 121 ~fDlV~~DPPy~~g~----------~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 121 PHNVVFVDPPFRKGL----------LEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CceEEEECCCCCCCh----------HHHHHHHHHHCCCcCCCcEEEEEec
Confidence 699999998863321 2344555544 4799999988765
No 130
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.37 E-value=8.1e-12 Score=104.28 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=77.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcc--------ccccccceEEEecChh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT--------SKAEKGLVKLFNMCHS 162 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~--------~~~~~~~v~~~~~~~~ 162 (267)
.+.++.+|||+|||.|..++.||++ +.+|+|||+|+.+++.+.+...... ......++++.++|..
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC------CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECccc
Confidence 3456789999999999999999987 5799999999999998743211100 0001356777776655
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
++.... ...||.|+-...+ ....++...++++.+.++|||||++++.+
T Consensus 108 ~l~~~~--~~~fd~v~D~~~~-------~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 108 ALTAAD--LADVDAVYDRAAL-------IALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CCCccc--CCCeeEEEehHhH-------hhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 443211 1367888754211 11134567899999999999999755543
No 131
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.36 E-value=1.3e-11 Score=104.16 Aligned_cols=107 Identities=16% Similarity=0.229 Sum_probs=82.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|++++...+ .+++++..+..++... ..
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~--~~ 112 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL------GADVTGIDASEENIEVARLHALESG-----LKIDYRQTTAEELAAE--HP 112 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEcCCHHHHHHHHHHHHHcC-----CceEEEecCHHHhhhh--cC
Confidence 346789999999999999999876 3689999999999999999887654 2566766555544322 23
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..||+|++.. +..+..+...+++++.+.|+|||++++..+
T Consensus 113 ~~fD~Ii~~~---------~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 113 GQFDVVTCME---------MLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred CCccEEEEhh---------HhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 4799998862 333444567899999999999999988765
No 132
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.36 E-value=8.3e-12 Score=104.60 Aligned_cols=106 Identities=18% Similarity=0.270 Sum_probs=82.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+ ..++.+...+..++.... ..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~~--~~~ 112 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL------GANVTGIDASEENIEVAKLHAKKDP----LLKIEYRCTSVEDLAEKG--AKS 112 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhcCC--CCC
Confidence 4779999999999999998875 3579999999999999999988755 235777776654443211 247
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|+++ ...++..+...+++++.+.|+|||.+++...
T Consensus 113 ~D~i~~~---------~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 113 FDVVTCM---------EVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ccEEEeh---------hHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999887 2344455667899999999999999988764
No 133
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.35 E-value=1.7e-11 Score=102.40 Aligned_cols=115 Identities=16% Similarity=0.141 Sum_probs=94.6
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
..+||||||.|.+...+|+.. |...++|||+....+..|.+.+.+.+ ..|+.+++.|+..+...+.+++++|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n----P~~nfiGiEi~~~~v~~~l~k~~~~~----l~Nlri~~~DA~~~l~~~~~~~sl~ 121 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN----PEKNFLGIEIRVPGVAKALKKIKELG----LKNLRLLCGDAVEVLDYLIPDGSLD 121 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC----CCCCEEEEEEehHHHHHHHHHHHHcC----CCcEEEEcCCHHHHHHhcCCCCCee
Confidence 589999999999999999995 46899999999999999999999987 4499999999999999888888999
Q ss_pred EEEEeCCCCCCCCCceee-chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 176 LVAFNLGYLPGGDKSVIT-TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
-|..+++- |.+... ++ ..=....+++.+.+.|||||.+.+.+-
T Consensus 122 ~I~i~FPD-PWpKkR-H~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 122 KIYINFPD-PWPKKR-HHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred EEEEECCC-CCCCcc-ccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 99999754 222111 11 111236899999999999999988664
No 134
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.35 E-value=8.9e-12 Score=100.13 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=75.7
Q ss_pred HHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh
Q 041272 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE 166 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 166 (267)
++...+++|.+|||+|||.|.+...|.+.. +.+.+|||++++.+..|.+ .-+.++++|..+-..
T Consensus 6 ~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k-----~v~g~GvEid~~~v~~cv~-----------rGv~Viq~Dld~gL~ 69 (193)
T PF07021_consen 6 IIAEWIEPGSRVLDLGCGDGELLAYLKDEK-----QVDGYGVEIDPDNVAACVA-----------RGVSVIQGDLDEGLA 69 (193)
T ss_pred HHHHHcCCCCEEEecCCCchHHHHHHHHhc-----CCeEEEEecCHHHHHHHHH-----------cCCCEEECCHHHhHh
Confidence 344568899999999999999999999863 4799999999999888865 346678877765443
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhc
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~ 208 (267)
.. ++.+||.||.+ ..+.....+.++|+++.|+
T Consensus 70 ~f-~d~sFD~VIls---------qtLQ~~~~P~~vL~EmlRV 101 (193)
T PF07021_consen 70 DF-PDQSFDYVILS---------QTLQAVRRPDEVLEEMLRV 101 (193)
T ss_pred hC-CCCCccEEehH---------hHHHhHhHHHHHHHHHHHh
Confidence 33 35589999998 5666677788999998776
No 135
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=8.1e-12 Score=112.82 Aligned_cols=145 Identities=12% Similarity=0.098 Sum_probs=109.2
Q ss_pred eecccceeeeecCCCccccchhhhccCCeeEEEecCCcccccccccccccccccccCCCCCCCCCCcchhHHHHhhHHHh
Q 041272 10 RCWSRSLSFAIPRNTLLPFPAAALSKANVNVLRFSSSCCSAASFQQKQSCSTNNCTPLPLCKDSPLSGTLITIAANGVWK 89 (267)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~ 89 (267)
++--..|+|+|+++.||| .|+.+. ..++..+.++.
T Consensus 345 ~E~l~~ltF~iSp~AFFQ-----------------------~Nt~~a---------------------evLys~i~e~~- 379 (534)
T KOG2187|consen 345 TESLLGLTFRISPGAFFQ-----------------------TNTSAA---------------------EVLYSTIGEWA- 379 (534)
T ss_pred EeecCCeEEEECCchhhc-----------------------cCcHHH---------------------HHHHHHHHHHh-
Confidence 344678999999999999 776655 55566666654
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
.++.+..+||+.||||.+++.+|+.+ .+|+||++++++++.|++|++.|+ ..|++|+++.++++...+.
T Consensus 380 -~l~~~k~llDv~CGTG~iglala~~~------~~ViGvEi~~~aV~dA~~nA~~Ng----isNa~Fi~gqaE~~~~sl~ 448 (534)
T KOG2187|consen 380 -GLPADKTLLDVCCGTGTIGLALARGV------KRVIGVEISPDAVEDAEKNAQING----ISNATFIVGQAEDLFPSLL 448 (534)
T ss_pred -CCCCCcEEEEEeecCCceehhhhccc------cceeeeecChhhcchhhhcchhcC----ccceeeeecchhhccchhc
Confidence 56778899999999999999999985 689999999999999999999999 7999999997777655332
Q ss_pred CC--CcEE-EEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 170 KS--TAVR-LVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 170 ~~--~~~d-~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.. ..-+ +++.|++- . . -...+++.+.+.-++--.++++|.+
T Consensus 449 ~~~~~~~~~v~iiDPpR---~--G------lh~~~ik~l~~~~~~~rlvyvSCn~ 492 (534)
T KOG2187|consen 449 TPCCDSETLVAIIDPPR---K--G------LHMKVIKALRAYKNPRRLVYVSCNP 492 (534)
T ss_pred ccCCCCCceEEEECCCc---c--c------ccHHHHHHHHhccCccceEEEEcCH
Confidence 21 1223 55666321 0 0 1146777777775688888888874
No 136
>PHA03411 putative methyltransferase; Provisional
Probab=99.33 E-value=1.3e-11 Score=105.05 Aligned_cols=112 Identities=14% Similarity=0.152 Sum_probs=79.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
..+.+|||+|||+|.++..++++.+ +.+|+|+|+++.|++.|++++ .++++++.|..++. . +.
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~----~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~---~-~~ 125 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCK----PEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFE---S-NE 125 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhc---c-cC
Confidence 3457999999999999999988743 369999999999999998863 35677776654432 2 34
Q ss_pred cEEEEEEeCCCCCCCCCceeec--h-------hh--HHHHHHHHHhcccCCcEEEEEEecC
Q 041272 173 AVRLVAFNLGYLPGGDKSVITT--S-------ET--TKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~--~-------~~--~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.||+|++|+++.+......... . +. ..++++....+|+|+|.+.+. +.+
T Consensus 126 kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss 185 (279)
T PHA03411 126 KFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSG 185 (279)
T ss_pred CCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-Eec
Confidence 7999999998865322111110 1 11 257788889999999966554 543
No 137
>PHA03412 putative methyltransferase; Provisional
Probab=99.33 E-value=1.9e-11 Score=101.75 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=76.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+.+|||+|||+|.++..+++++.. -+..+|+++|+++.+++.|+++.. ++.+++.|..+. .. +..
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~-~~~~~V~aVEID~~Al~~Ar~n~~---------~~~~~~~D~~~~---~~-~~~ 114 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMY-AKPREIVCVELNHTYYKLGKRIVP---------EATWINADALTT---EF-DTL 114 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhccc-CCCcEEEEEECCHHHHHHHHhhcc---------CCEEEEcchhcc---cc-cCC
Confidence 3679999999999999999986431 014689999999999999998642 356666554322 11 347
Q ss_pred EEEEEEeCCCCCCCCCce---eechhhHHHHHHHHHhcccCCcE
Q 041272 174 VRLVAFNLGYLPGGDKSV---ITTSETTKMALEAAERILIPGGL 214 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~---~~~~~~~~~~l~~~~~~LkpgG~ 214 (267)
||+|++|+||.+...... .........+++.+.+++++|+.
T Consensus 115 FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 115 FDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 999999999976542211 11224456789999997777775
No 138
>PRK00811 spermidine synthase; Provisional
Probab=99.33 E-value=5.6e-11 Score=103.19 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=83.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccc-cccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA-EKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+...+||+||||+|..+..++++.+ ..+|++||+++++++.|++.+...+... ...+++++.+|....... ..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~----~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~ 148 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS----VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TE 148 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC----CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CC
Confidence 3567999999999999999987633 3689999999999999999886532110 146889998887655433 23
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..||+|++++.. |... ...-...++++.+.+.|+|||++++..
T Consensus 149 ~~yDvIi~D~~d-p~~~----~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 149 NSFDVIIVDSTD-PVGP----AEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred CcccEEEECCCC-CCCc----hhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 479999998521 1100 001123688999999999999997653
No 139
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.33 E-value=2.4e-11 Score=95.85 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=76.8
Q ss_pred cCCCC-EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 92 VRKGD-TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 92 l~~~~-~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
+.+.. +|||+|||+|.+...|++.-= ..+++|+|.|+.+++.|+..+++.+ ....|+|.+.|.. +....
T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~egf----~~~L~GvDYs~~AV~LA~niAe~~~---~~n~I~f~q~DI~---~~~~~ 133 (227)
T KOG1271|consen 64 VSKQADRVLDLGTGNGHLLFQLAKEGF----QSKLTGVDYSEKAVELAQNIAERDG---FSNEIRFQQLDIT---DPDFL 133 (227)
T ss_pred hcccccceeeccCCchHHHHHHHHhcC----CCCccccccCHHHHHHHHHHHHhcC---CCcceeEEEeecc---CCccc
Confidence 34444 999999999999999998631 2469999999999999999888887 3344888775443 22222
Q ss_pred CCcEEEEEEe----C-CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFN----L-GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~----~-~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+||+|.-- . ...|.. .......++..+.++|+|||+++|..+
T Consensus 134 ~~qfdlvlDKGT~DAisLs~d~------~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 134 SGQFDLVLDKGTLDAISLSPDG------PVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred ccceeEEeecCceeeeecCCCC------cccceeeehhhHhhccCCCcEEEEEec
Confidence 3467776421 0 000110 011124678888999999999999876
No 140
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.32 E-value=9.5e-11 Score=95.24 Aligned_cols=111 Identities=16% Similarity=0.140 Sum_probs=79.2
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
..-|||||||+|..+..+... +-..+|+|+|+.|++.|.+.--+ -.++..|.. ...+...+.|
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~------Gh~wiGvDiSpsML~~a~~~e~e---------gdlil~DMG--~GlpfrpGtF 113 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS------GHQWIGVDISPSMLEQAVERELE---------GDLILCDMG--EGLPFRPGTF 113 (270)
T ss_pred CcEEEEeccCCCcchheeccC------CceEEeecCCHHHHHHHHHhhhh---------cCeeeeecC--CCCCCCCCcc
Confidence 568999999999999888865 46789999999999999973221 134443443 2234455688
Q ss_pred EEEEEe--CCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 175 RLVAFN--LGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 175 d~ii~~--~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
|.+|+- +.++=.++.+.++.......++..++.+|++|++.++..++.
T Consensus 114 Dg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 114 DGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred ceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 877544 344444444444444556788999999999999999988853
No 141
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.32 E-value=3.4e-11 Score=102.00 Aligned_cols=107 Identities=10% Similarity=0.136 Sum_probs=88.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-CC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-PK-- 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~~-- 170 (267)
+..+|||||+++|+.++.+|+.+++ +++|+++|.+++..+.|++++++.| ...+|+++.++..+....+ ..
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~---~g~v~tiE~~~~~~~~Ar~~~~~ag---~~~~I~~~~G~a~e~L~~l~~~~~ 152 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPE---DGKILAMDINRENYELGLPVIQKAG---VAHKIDFREGPALPVLDQMIEDGK 152 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCC---CCEEEEEeCCHHHHHHHHHHHHHCC---CCCceEEEeccHHHHHHHHHhccc
Confidence 4569999999999999999998765 6899999999999999999999988 5789999998887654432 21
Q ss_pred -CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 171 -STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 171 -~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
..+||+|+.+. ....+..+++.+.++|+|||++++-
T Consensus 153 ~~~~fD~iFiDa------------dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 153 YHGTFDFIFVDA------------DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cCCcccEEEecC------------CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 24799999983 2455678899999999999998763
No 142
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.31 E-value=5.7e-11 Score=85.76 Aligned_cols=102 Identities=22% Similarity=0.302 Sum_probs=78.0
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEE
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL 176 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ 176 (267)
+|+|+|||+|..+..+++. + ..+++++|+++.+++.+++...... ..++.++..+..+... ....++|+
T Consensus 1 ~ildig~G~G~~~~~~~~~-~----~~~~~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~d~ 69 (107)
T cd02440 1 RVLDLGCGTGALALALASG-P----GARVTGVDISPVALELARKAAAALL----ADNVEVLKGDAEELPP--EADESFDV 69 (107)
T ss_pred CeEEEcCCccHHHHHHhcC-C----CCEEEEEeCCHHHHHHHHHHHhccc----ccceEEEEcChhhhcc--ccCCceEE
Confidence 5899999999999999872 2 4799999999999999986443333 4677888766655433 12347999
Q ss_pred EEEeCCCCCCCCCceeec-hhhHHHHHHHHHhcccCCcEEEEE
Q 041272 177 VAFNLGYLPGGDKSVITT-SETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 177 ii~~~~~lp~~d~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
++.+.. .+. ......+++.+.+.|+|||.+++.
T Consensus 70 i~~~~~---------~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 70 IISDPP---------LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEEccc---------eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 999842 333 566789999999999999999875
No 143
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.30 E-value=1.3e-11 Score=106.15 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=76.0
Q ss_pred CCCEEEEecCCCCh----HHHHHHHhcCCC-CCCcEEEEEeCChHHHHHHHHHHhhc----cc-----------------
Q 041272 94 KGDTVVDATCGNGY----DTLMMLKMVADE-SSAGCVYGLDIQSEALKSTSSLLDKT----TS----------------- 147 (267)
Q Consensus 94 ~~~~VLDlGcG~G~----~~~~la~~~~~~-~p~~~v~giD~s~~~i~~a~~~~~~~----~~----------------- 147 (267)
++.+|+|+|||||. ++..+++..+.. .++.+|+|+|+|+.|++.|++..-.. +.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996 556666654310 01468999999999999999864210 00
Q ss_pred --cccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEE
Q 041272 148 --KAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 148 --~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
+....+|.|.+.+. .+...+..+||+|++.. +++ ..+...++++++++.|+|||++++.
T Consensus 179 v~~~ir~~V~F~~~dl---~~~~~~~~~fD~I~crn---------vl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNL---LAESPPLGDFDLIFCRN---------VLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccC---CCCCCccCCCCEEEech---------hHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 00123567766444 33333345799998852 222 2356679999999999999999874
No 144
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.28 E-value=5.3e-11 Score=102.63 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=87.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
..|.+|||+-|-||.+++.++.. | ..+|++||.|..+++.|++|+..|+. ...+++++..|..+.........
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-G----A~~v~~VD~S~~al~~a~~N~~lNg~--~~~~~~~~~~Dvf~~l~~~~~~~ 194 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-G----AKEVVSVDSSKRALEWAKENAALNGL--DLDRHRFIQGDVFKFLKRLKKGG 194 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-T----ESEEEEEES-HHHHHHHHHHHHHTT---CCTCEEEEES-HHHHHHHHHHTT
T ss_pred cCCCceEEecCCCCHHHHHHHHC-C----CCEEEEEeCCHHHHHHHHHHHHHcCC--CccceEEEecCHHHHHHHHhcCC
Confidence 45889999999999999988764 2 35899999999999999999999882 13678999888776444333345
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
.||+||.|+|.+.... .....++.+++..+.++|+|||.+++.++..+
T Consensus 195 ~fD~IIlDPPsF~k~~---~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 195 RFDLIILDPPSFAKSK---FDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp -EEEEEE--SSEESST---CEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred CCCEEEECCCCCCCCH---HHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 8999999987754332 22345678899999999999999977666443
No 145
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.28 E-value=6e-11 Score=95.28 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=73.7
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..++++ +.+|+++|+++.+++.+++++.. ..+++++++|..++ ..+
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~------~~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~---~~~ 74 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLER------AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKF---DLP 74 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhc------CCeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcC---Ccc
Confidence 3567889999999999999999987 36899999999999999998854 25788888666544 223
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhc--ccCCcEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI--LIPGGLISMV 218 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~--LkpgG~l~i~ 218 (267)
+..+|.+++|++|-. ....+..+.+. +.++|.+++.
T Consensus 75 ~~~~d~vi~n~Py~~------------~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 75 KLQPYKVVGNLPYNI------------STPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred ccCCCEEEECCCccc------------HHHHHHHHHhcCCCcceEEEEEE
Confidence 336899999976611 12344444432 3477777654
No 146
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.28 E-value=1.5e-10 Score=101.06 Aligned_cols=117 Identities=22% Similarity=0.269 Sum_probs=88.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-ChhhhhhcCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-CHSRMEEIVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~ 169 (267)
.+++|..|||--||||.+...+.-. +++++|.|++..|++-|+.|++..+ .....+... |+.++. +
T Consensus 194 ~v~~G~~vlDPFcGTGgiLiEagl~------G~~viG~Did~~mv~gak~Nl~~y~----i~~~~~~~~~Da~~lp--l- 260 (347)
T COG1041 194 RVKRGELVLDPFCGTGGILIEAGLM------GARVIGSDIDERMVRGAKINLEYYG----IEDYPVLKVLDATNLP--L- 260 (347)
T ss_pred ccccCCEeecCcCCccHHHHhhhhc------CceEeecchHHHHHhhhhhhhhhhC----cCceeEEEecccccCC--C-
Confidence 5789999999999999999998865 6899999999999999999999876 344545444 554444 3
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
++..+|.|+.+++|=............-..++++.+.++||+||++++..+
T Consensus 261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 333799999999883222111111124468999999999999999988765
No 147
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.28 E-value=2e-10 Score=100.70 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=68.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-cccccccceEEE-ecChhhhhhcC-CC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-TSKAEKGLVKLF-NMCHSRMEEIV-PK 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~-~~~~~~l~~~~-~~ 170 (267)
++.+|||||||+|.+...++.+.. +.+++|+|+++.+++.|++|++.+ + +..+++++ +.+..++.... ..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~----~~~~~atDId~~Al~~A~~Nv~~Np~---l~~~I~~~~~~~~~~i~~~i~~~ 186 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY----GWRFVGSDIDPQALASAQAIISANPG---LNGAIRLRLQKDSKAIFKGIIHK 186 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC----CCEEEEEeCCHHHHHHHHHHHHhccC---CcCcEEEEEccchhhhhhccccc
Confidence 457999999999988888887643 589999999999999999999998 6 45678775 34444544422 23
Q ss_pred CCcEEEEEEeCCCCCCCCC
Q 041272 171 STAVRLVAFNLGYLPGGDK 189 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~ 189 (267)
...||+|++|+||......
T Consensus 187 ~~~fDlivcNPPf~~s~~e 205 (321)
T PRK11727 187 NERFDATLCNPPFHASAAE 205 (321)
T ss_pred CCceEEEEeCCCCcCcchh
Confidence 4589999999999776543
No 148
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.27 E-value=4.7e-10 Score=103.30 Aligned_cols=138 Identities=15% Similarity=0.191 Sum_probs=100.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
..++|++|||+++|+|.-|..+|..++. .+.|+++|+++..++..++|+++.| ..++.+...|...+....+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~---~g~lvA~D~~~~R~~~L~~nl~r~G----~~nv~v~~~D~~~~~~~~~- 181 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNN---QGAIVANEYSASRVKVLHANISRCG----VSNVALTHFDGRVFGAALP- 181 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCchhhhhhhch-
Confidence 4578999999999999999999999865 5799999999999999999999988 5778888777666544333
Q ss_pred CCcEEEEEEeCCC-----CCCCCCceee--------chhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHH-HHH
Q 041272 171 STAVRLVAFNLGY-----LPGGDKSVIT--------TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAV-EAF 236 (267)
Q Consensus 171 ~~~~d~ii~~~~~-----lp~~d~~~~~--------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-~~~ 236 (267)
..||.|+.|.+. +......... ......++|..+.+.|||||+|+.+++ ....+|.+.+ ..+
T Consensus 182 -~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC---T~~~eENE~vV~~~ 257 (470)
T PRK11933 182 -ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC---TLNREENQAVCLWL 257 (470)
T ss_pred -hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC---CCCHHHHHHHHHHH
Confidence 359999999654 1111101111 123347899999999999999966655 3344555544 444
Q ss_pred HHhC
Q 041272 237 ARSL 240 (267)
Q Consensus 237 ~~~l 240 (267)
++..
T Consensus 258 L~~~ 261 (470)
T PRK11933 258 KETY 261 (470)
T ss_pred HHHC
Confidence 4543
No 149
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=6.2e-10 Score=88.81 Aligned_cols=75 Identities=24% Similarity=0.267 Sum_probs=62.4
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
-.|.+|+|+|||||.+++..+-. | ..+|+|+|+++++++.+++|+.+. ..+++|+..|..++. .
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~l-G----a~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~~------~ 107 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALL-G----ASRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDFR------G 107 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhc-C----CcEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhcC------C
Confidence 36779999999999999998864 3 379999999999999999999984 478999986665443 3
Q ss_pred cEEEEEEeCCC
Q 041272 173 AVRLVAFNLGY 183 (267)
Q Consensus 173 ~~d~ii~~~~~ 183 (267)
.+|.++.|+|+
T Consensus 108 ~~dtvimNPPF 118 (198)
T COG2263 108 KFDTVIMNPPF 118 (198)
T ss_pred ccceEEECCCC
Confidence 68899999765
No 150
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.27 E-value=8.8e-11 Score=98.75 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=73.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+ ...++.+..++.. . .+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~------~~~v~~~D~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~---~---~~ 125 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR------GAKVVASDISPQMVEEARERAPEAG---LAGNITFEVGDLE---S---LL 125 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcC---CccCcEEEEcCch---h---cc
Confidence 456789999999999999999976 3579999999999999999987765 2257888775522 1 13
Q ss_pred CcEEEEEEeCCCCCCCCCcee-e-chhhHHHHHHHHHhcccCCcEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVI-T-TSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~-~-~~~~~~~~l~~~~~~LkpgG~l 215 (267)
..||+|++.. +. + ..+....+++++.+.+++++++
T Consensus 126 ~~fD~v~~~~---------~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 126 GRFDTVVCLD---------VLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred CCcCEEEEcc---------hhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 4699998762 22 2 2345567888888876544443
No 151
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.25 E-value=7.6e-11 Score=100.95 Aligned_cols=135 Identities=20% Similarity=0.208 Sum_probs=93.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.|.+|||||||+|+++..++.+- ...|+|||.++....+.+.-.+-.+ ...++..+....+++.. ...
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~G-----A~~ViGiDP~~lf~~QF~~i~~~lg---~~~~~~~lplgvE~Lp~----~~~ 182 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRG-----AKSVIGIDPSPLFYLQFEAIKHFLG---QDPPVFELPLGVEDLPN----LGA 182 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcC-----CCEEEEECCChHHHHHHHHHHHHhC---CCccEEEcCcchhhccc----cCC
Confidence 58899999999999999999872 3689999999987776544333322 11233333233444443 347
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC--CCC----------------ChhhHHHHHH
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG--HPG----------------GREELEAVEA 235 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~----------------~~~~~~~~~~ 235 (267)
||+|++- .++.|..++...|+++.+.|+|||.+++-+..- ... -......+..
T Consensus 183 FDtVF~M---------GVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~ 253 (315)
T PF08003_consen 183 FDTVFSM---------GVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKN 253 (315)
T ss_pred cCEEEEe---------eehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHH
Confidence 9999887 688888899999999999999999999755321 110 0013456788
Q ss_pred HHHhCCCCceEEEE
Q 041272 236 FARSLSVDDWICCK 249 (267)
Q Consensus 236 ~~~~l~~~~~~~~~ 249 (267)
|++.......+++.
T Consensus 254 wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 254 WLERAGFKDVRCVD 267 (315)
T ss_pred HHHHcCCceEEEec
Confidence 88876665555544
No 152
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=7.6e-11 Score=95.13 Aligned_cols=123 Identities=18% Similarity=0.222 Sum_probs=90.3
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc-----c-ccc
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS-----K-AEK 151 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~-----~-~~~ 151 (267)
..+...+...+...+.||.+.||+|+|+|+++..++..++. ++..++|||.-++.|+.+++|+...-. . ...
T Consensus 66 p~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~--~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~ 143 (237)
T KOG1661|consen 66 PHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGA--TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR 143 (237)
T ss_pred hHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcC--CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence 34445555666667899999999999999999999998876 345569999999999999999976421 0 113
Q ss_pred cceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 152 ~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.++.++.+|. .....+..+||.|...... .+..+++...|+|||++++-..
T Consensus 144 ~~l~ivvGDg---r~g~~e~a~YDaIhvGAaa---------------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 144 GELSIVVGDG---RKGYAEQAPYDAIHVGAAA---------------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CceEEEeCCc---cccCCccCCcceEEEccCc---------------cccHHHHHHhhccCCeEEEeec
Confidence 4556665444 4444555678888776322 4677888999999999977543
No 153
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.24 E-value=1.3e-10 Score=96.96 Aligned_cols=118 Identities=12% Similarity=0.104 Sum_probs=81.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc------cc--cccccceEEEecChh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT------TS--KAEKGLVKLFNMCHS 162 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~------~~--~~~~~~v~~~~~~~~ 162 (267)
.+.++.+||+.|||.|..+..||+. +.+|+|+|+|+.+|+.+.+..... +. .....+++++++|..
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f 113 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIF 113 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC------CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCc
Confidence 3456789999999999999999997 578999999999999986632110 00 001346788887766
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
++.........||+|+-...+ +...++...++.+.+.++|+|||.+++..+.
T Consensus 114 ~l~~~~~~~~~fD~VyDra~~-------~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 114 NLPKIANNLPVFDIWYDRGAY-------IALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred CCCccccccCCcCeeeeehhH-------hcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 653211112367876544211 1113456689999999999999999887764
No 154
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.24 E-value=3.7e-10 Score=92.31 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=78.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-CCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV-PKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~~~~ 172 (267)
++.+|||++||+|.+++.++.+. ..+|++||.++.+++.+++|++.++ ...+++++.+|..+..... ....
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-----a~~v~~vE~~~~a~~~~~~N~~~~~---~~~~~~~~~~D~~~~l~~~~~~~~ 120 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-----AKVAFLEEDDRKANQTLKENLALLK---SGEQAEVVRNSALRALKFLAKKPT 120 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHHHHhC---CcccEEEEehhHHHHHHHhhccCC
Confidence 57899999999999999999873 3589999999999999999999887 3357889988875543322 2222
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHH--HhcccCCcEEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAA--ERILIPGGLISMVV 219 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~--~~~LkpgG~l~i~~ 219 (267)
.+|+|+.+++|-.. .....++.+ ..+|+++|++++..
T Consensus 121 ~~dvv~~DPPy~~~----------~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 121 FDNVIYLDPPFFNG----------ALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CceEEEECcCCCCC----------cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 47999999877321 112344433 34788999876643
No 155
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.23 E-value=7.9e-11 Score=96.72 Aligned_cols=94 Identities=15% Similarity=0.238 Sum_probs=68.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh-hhhcCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR-MEEIVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~ 169 (267)
.++++++|||+|||+|.++..+++.. +..++|+|+++++++.|++ .++++++++..+ +.. .
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~-----~~~~~giD~s~~~i~~a~~-----------~~~~~~~~d~~~~l~~--~ 71 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEK-----QVRGYGIEIDQDGVLACVA-----------RGVNVIQGDLDEGLEA--F 71 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhcc-----CCcEEEEeCCHHHHHHHHH-----------cCCeEEEEEhhhcccc--c
Confidence 35678899999999999999988763 3578999999999998864 134566555433 211 2
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccC
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP 211 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkp 211 (267)
++.+||+|+++ ..+++.+++.++++++.+.+++
T Consensus 72 ~~~sfD~Vi~~---------~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 72 PDKSFDYVILS---------QTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CCCCcCEEEEh---------hHhHcCcCHHHHHHHHHHhCCe
Confidence 34579999998 3445556678899999887664
No 156
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.22 E-value=2.3e-10 Score=100.40 Aligned_cols=104 Identities=18% Similarity=0.149 Sum_probs=69.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc-ccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK-AEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++++..... ....++.+...+..++ +.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l------~~ 211 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL------SG 211 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc------CC
Confidence 5789999999999999999986 469999999999999999998764200 0023567766554322 24
Q ss_pred cEEEEEEeCCCCCCCCCceeechh-hHHHHHHHHHhcccCCcEEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSE-TTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.||+|++.. .++|.+. ....+++.+.+ +.+||++ +.+
T Consensus 212 ~fD~Vv~~~--------vL~H~p~~~~~~ll~~l~~-l~~g~li-Is~ 249 (315)
T PLN02585 212 KYDTVTCLD--------VLIHYPQDKADGMIAHLAS-LAEKRLI-ISF 249 (315)
T ss_pred CcCEEEEcC--------EEEecCHHHHHHHHHHHHh-hcCCEEE-EEe
Confidence 689988762 1223222 23456666665 4566554 443
No 157
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.21 E-value=8.8e-11 Score=96.32 Aligned_cols=128 Identities=21% Similarity=0.191 Sum_probs=83.7
Q ss_pred cccCCCCCCCCCCcchhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHH
Q 041272 63 NCTPLPLCKDSPLSGTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142 (267)
Q Consensus 63 ~~~~~~~~~d~~~~~~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~ 142 (267)
.|........+.++.....+- ..+. ..+++|.+|+|+.||.|.+++.+|+..+ ...|+++|++|.+++..++|+
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er-~Ri~-~~v~~~e~VlD~faGIG~f~l~~ak~~~----~~~V~A~d~Np~a~~~L~~Ni 145 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTER-RRIA-NLVKPGEVVLDMFAGIGPFSLPIAKHGK----AKRVYAVDLNPDAVEYLKENI 145 (200)
T ss_dssp TEEEEEETTTS---GGGHHHH-HHHH-TC--TT-EEEETT-TTTTTHHHHHHHT-----SSEEEEEES-HHHHHHHHHHH
T ss_pred CEEEEEccceEEEccccHHHH-HHHH-hcCCcceEEEEccCCccHHHHHHhhhcC----ccEEEEecCCHHHHHHHHHHH
Confidence 344444444555543333332 2222 3478899999999999999999998532 478999999999999999999
Q ss_pred hhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 143 DKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 143 ~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
+.|+ ...++..+++|..++.. ...+|.++++++. ....++..+.+++++||++.
T Consensus 146 ~lNk---v~~~i~~~~~D~~~~~~----~~~~drvim~lp~-------------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 146 RLNK---VENRIEVINGDAREFLP----EGKFDRVIMNLPE-------------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHTT----TTTEEEEES-GGG-------TT-EEEEEE--TS-------------SGGGGHHHHHHHEEEEEEEE
T ss_pred HHcC---CCCeEEEEcCCHHHhcC----ccccCEEEECChH-------------HHHHHHHHHHHHhcCCcEEE
Confidence 9998 56778889888766554 4579999999532 22368899999999999874
No 158
>PLN02366 spermidine synthase
Probab=99.20 E-value=7.7e-10 Score=96.84 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=83.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+...+||+||||.|..+..++++-+ ..+|+.+|+++.+++.|++.+...+......+++++.+|......... +.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~----v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-~~ 164 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSS----VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-EG 164 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC----CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-CC
Confidence 4567999999999999999998632 368999999999999999988653211124689999887755433221 34
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
.||+|+.+... |.. ....-...++++.+.++|+|||+++..
T Consensus 165 ~yDvIi~D~~d-p~~----~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 165 TYDAIIVDSSD-PVG----PAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCCEEEEcCCC-CCC----chhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 79999998422 110 000112368999999999999999764
No 159
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.20 E-value=1.4e-09 Score=93.90 Aligned_cols=115 Identities=14% Similarity=0.058 Sum_probs=80.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
...+||+||||+|..+..+++..+ ..+|+++|+++++++.|++++...+......+++++.+|........ ...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~----~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~--~~~ 145 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKS----VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT--ENT 145 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCC----cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC--CCC
Confidence 445999999999999998887642 36899999999999999998765321112357788776654433222 347
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
||+|+.+......... .-...++++.+.++|+|||++++..
T Consensus 146 yDvIi~D~~~~~~~~~-----~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAE-----TLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred ccEEEEeCCCCCCccc-----chhHHHHHHHHHHHhCCCcEEEEcC
Confidence 9999998532111000 0113688999999999999998763
No 160
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.19 E-value=3.2e-10 Score=100.15 Aligned_cols=117 Identities=19% Similarity=0.278 Sum_probs=77.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc------ccccceEEEecChh--hhh
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK------AEKGLVKLFNMCHS--RME 165 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~------~~~~~v~~~~~~~~--~l~ 165 (267)
++.+|||+|||.|....-+... + -..++|+|++.+.|+.|+++.+..... ...-...++..|.. .+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~----i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~ 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-K----IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR 136 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-----SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH
T ss_pred CCCeEEEecCCCchhHHHHHhc-C----CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh
Confidence 7889999999999888777764 2 379999999999999999999432110 00123445554433 334
Q ss_pred hcCCCC-CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 EIVPKS-TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 ~~~~~~-~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+.+. ..||+|-+-+.. +......+..+.+|+++.+.|+|||+++.+++
T Consensus 137 ~~~~~~~~~FDvVScQFal-----HY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 137 EKLPPRSRKFDVVSCQFAL-----HYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp CTSSSTTS-EEEEEEES-G-----GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhccccCCCcceeehHHHH-----HHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 434333 689999877421 01122345667899999999999999999887
No 161
>PRK01581 speE spermidine synthase; Validated
Probab=99.17 E-value=1.5e-09 Score=95.87 Aligned_cols=117 Identities=11% Similarity=0.043 Sum_probs=80.9
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHH--Hhhccc-cccccceEEEecChhhhhhcCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSL--LDKTTS-KAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~--~~~~~~-~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
....+||++|||+|..+..+++..+ ..+|++||+++++++.|++. +...+. ....++++++.+|..+.....
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~----v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~- 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYET----VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP- 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCC----CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-
Confidence 3456999999999999888887632 37999999999999999962 111100 012478999888876654332
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...||+|+.+++. +... ....-...++++.+.+.|+|||++++..
T Consensus 224 -~~~YDVIIvDl~D---P~~~-~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 224 -SSLYDVIIIDFPD---PATE-LLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred -CCCccEEEEcCCC---cccc-chhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 3479999999532 1100 0111223689999999999999987653
No 162
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.16 E-value=8.1e-10 Score=92.14 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=79.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhh-ccc-------cccccceEEEecChh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK-TTS-------KAEKGLVKLFNMCHS 162 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~-~~~-------~~~~~~v~~~~~~~~ 162 (267)
..+++.+||..|||.|.....||++ +.+|+|+|+|+.+++.|.+.... ... .....+|+++++|..
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF 107 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQ------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFF 107 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHT------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TT
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHC------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccc
Confidence 4667789999999999999999997 57999999999999998443221 000 011346788887776
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
++.... .+.||+|+-...+ +...++...++.+.+.++|+|||.+++.+
T Consensus 108 ~l~~~~--~g~fD~iyDr~~l-------~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 108 ELPPED--VGKFDLIYDRTFL-------CALPPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp TGGGSC--HHSEEEEEECSST-------TTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred cCChhh--cCCceEEEEeccc-------ccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 654322 1369999866322 11135667899999999999999944443
No 163
>PRK03612 spermidine synthase; Provisional
Probab=99.15 E-value=7.8e-10 Score=103.76 Aligned_cols=140 Identities=12% Similarity=0.035 Sum_probs=91.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHH--hhccc-cccccceEEEecChhhhhhcCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL--DKTTS-KAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~--~~~~~-~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
++..+|||+|||+|..+..++++-+ ..+|+++|+++++++.|+++. ...+. ....++++++.+|..+.....
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~----v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~- 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD----VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL- 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC----cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-
Confidence 4567999999999999999987521 269999999999999999943 22110 011368899988876654332
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (267)
..+||+|+.|++...... ...-...++++.+.+.|||||++++....... ..+......+.+.+.+|.
T Consensus 371 -~~~fDvIi~D~~~~~~~~----~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~----~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 371 -AEKFDVIIVDLPDPSNPA----LGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYF----APKAFWSIEATLEAAGLA 438 (521)
T ss_pred -CCCCCEEEEeCCCCCCcc----hhccchHHHHHHHHHhcCCCeEEEEecCCccc----chHHHHHHHHHHHHcCCE
Confidence 247999999953311000 00111357899999999999999876532111 123334455555555563
No 164
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.15 E-value=3.7e-10 Score=96.63 Aligned_cols=124 Identities=19% Similarity=0.325 Sum_probs=85.6
Q ss_pred HHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccccc--ccceEEEecChh--
Q 041272 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAE--KGLVKLFNMCHS-- 162 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~--~~~v~~~~~~~~-- 162 (267)
++....++++.++|+|||.|...+..-+. + -..++|+||.+..|++|+++.+.+..+.- .-.+.|+.+|..
T Consensus 110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kA-g----I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 110 LINLYTKRGDDVLDLGCGKGGDLLKWDKA-G----IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred HHHHHhccccccceeccCCcccHhHhhhh-c----ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 34455678999999999999998877754 2 36899999999999999999987531100 112456655443
Q ss_pred hhhhcCCCCCc-EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 163 RMEEIVPKSTA-VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 163 ~l~~~~~~~~~-~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+.+.+..+.+ ||+|-+-+.. +......+....+++++.+.|||||+++-+.+
T Consensus 185 ~l~d~~e~~dp~fDivScQF~~-----HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 185 RLMDLLEFKDPRFDIVSCQFAF-----HYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred HHHHhccCCCCCcceeeeeeeE-----eeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 44444433333 9988766411 01222456678899999999999999977665
No 165
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=4.1e-09 Score=94.23 Aligned_cols=141 Identities=21% Similarity=0.283 Sum_probs=101.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
..++|.+|||+.++.|.-|..+|+.+.. .+..|+++|+++.-++..++|+++.| ..++..+..|...+......
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~--~~~iV~A~D~~~~Rl~~l~~nl~RlG----~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMEN--EGAIVVAVDVSPKRLKRLRENLKRLG----VRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCC--CCceEEEEcCCHHHHHHHHHHHHHcC----CCceEEEecccccccccccc
Confidence 4578999999999999999999998753 24567999999999999999999998 56777777666555554444
Q ss_pred CCcEEEEEEeCCC-----CCCCCCceee--------chhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhH-HHHHHH
Q 041272 171 STAVRLVAFNLGY-----LPGGDKSVIT--------TSETTKMALEAAERILIPGGLISMVVYVGHPGGREEL-EAVEAF 236 (267)
Q Consensus 171 ~~~~d~ii~~~~~-----lp~~d~~~~~--------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~ 236 (267)
...||.|+.|.+. +......... ......++|+.+.++|||||.|+.+++.-.+ +|. ..+..+
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~---eENE~vV~~~ 303 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP---EENEEVVERF 303 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch---hcCHHHHHHH
Confidence 4469999999754 2111101011 1233578999999999999999888774333 333 344555
Q ss_pred HHhC
Q 041272 237 ARSL 240 (267)
Q Consensus 237 ~~~l 240 (267)
++..
T Consensus 304 L~~~ 307 (355)
T COG0144 304 LERH 307 (355)
T ss_pred HHhC
Confidence 5553
No 166
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.13 E-value=1.2e-10 Score=95.18 Aligned_cols=137 Identities=16% Similarity=0.200 Sum_probs=86.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC--C
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV--P 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~--~ 169 (267)
..+=.++||+|||||..+..+-.+. .+++|||+|+.|++.|.++-- .. .+.+ .++..+. .
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a------~~ltGvDiS~nMl~kA~eKg~-------YD--~L~~---Aea~~Fl~~~ 184 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMA------DRLTGVDISENMLAKAHEKGL-------YD--TLYV---AEAVLFLEDL 184 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHH------hhccCCchhHHHHHHHHhccc-------hH--HHHH---HHHHHHhhhc
Confidence 3344699999999999998888774 679999999999999987421 11 1122 2222222 1
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCC-----hhh-HHHHHHHH-HhCCC
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGG-----REE-LEAVEAFA-RSLSV 242 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----~~~-~~~~~~~~-~~l~~ 242 (267)
.+..+|+|+.. .++.-.-..+.++-.+...|+|||.+.+++-.....+ +.. ..--+.|. ..+..
T Consensus 185 ~~er~DLi~Aa---------DVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~ 255 (287)
T COG4976 185 TQERFDLIVAA---------DVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAA 255 (287)
T ss_pred cCCcccchhhh---------hHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHh
Confidence 23478988776 2333234446788889999999999999876443322 000 00011222 23455
Q ss_pred CceEEEEEeeecC
Q 041272 243 DDWICCKFQMLNR 255 (267)
Q Consensus 243 ~~~~~~~~~~~~~ 255 (267)
.+++++..+..+-
T Consensus 256 ~Gl~~i~~~~tti 268 (287)
T COG4976 256 SGLEVIAIEDTTI 268 (287)
T ss_pred cCceEEEeecccc
Confidence 6788877666544
No 167
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.13 E-value=7.3e-09 Score=80.86 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=108.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc--CC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI--VP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~--~~ 169 (267)
.+.|.-|||+|.|||.+|..+.++.-. ...+++||.|++.+..-.+.. +.+.++.+++.++... ..
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~---~~~L~~iE~~~dF~~~L~~~~---------p~~~ii~gda~~l~~~l~e~ 113 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVR---PESLTAIEYSPDFVCHLNQLY---------PGVNIINGDAFDLRTTLGEH 113 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCC---ccceEEEEeCHHHHHHHHHhC---------CCccccccchhhHHHHHhhc
Confidence 456779999999999999888776432 478999999999998887753 4566889998888753 34
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
.+..||.+++.++.+..+ ....-++++++...|.+||-++-..+...+ . ..+....|.+.+
T Consensus 114 ~gq~~D~viS~lPll~~P-------~~~~iaile~~~~rl~~gg~lvqftYgp~s--~----------v~l~r~~y~v~~ 174 (194)
T COG3963 114 KGQFFDSVISGLPLLNFP-------MHRRIAILESLLYRLPAGGPLVQFTYGPLS--P----------VLLGRGDYNVQH 174 (194)
T ss_pred CCCeeeeEEeccccccCc-------HHHHHHHHHHHHHhcCCCCeEEEEEecCCC--c----------ccccccceeEEE
Confidence 456899999998764443 344568999999999999999887773111 0 123445689999
Q ss_pred EeeecCCCCceEEEeec
Q 041272 250 FQMLNRPLAPVLVFLFK 266 (267)
Q Consensus 250 ~~~~~~~~~p~~~~~~k 266 (267)
++++-++-||..+.+-+
T Consensus 175 ~~~vvRN~PPA~v~~~~ 191 (194)
T COG3963 175 FDFVVRNFPPAQVWIYR 191 (194)
T ss_pred eeEEEecCCceeEEEee
Confidence 99999999997776543
No 168
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.13 E-value=9.6e-10 Score=89.27 Aligned_cols=127 Identities=18% Similarity=0.149 Sum_probs=85.9
Q ss_pred chhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEE
Q 041272 77 GTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL 156 (267)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~ 156 (267)
..++.+..-.++....-+|.+|||+.||||.++++.+.+- ..+|+.||.++.+++..++|++..+ ...++.+
T Consensus 25 ~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG-----A~~v~fVE~~~~a~~~i~~N~~~l~---~~~~~~v 96 (183)
T PF03602_consen 25 TDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG-----AKSVVFVEKNRKAIKIIKKNLEKLG---LEDKIRV 96 (183)
T ss_dssp SHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT------SEEEEEES-HHHHHHHHHHHHHHT----GGGEEE
T ss_pred cHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC-----CCeEEEEECCHHHHHHHHHHHHHhC---CCcceee
Confidence 3455554444444331368899999999999999988872 4699999999999999999999877 3446888
Q ss_pred EecChhh-hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHH--hcccCCcEEEEEEe
Q 041272 157 FNMCHSR-MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAE--RILIPGGLISMVVY 220 (267)
Q Consensus 157 ~~~~~~~-l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~ 220 (267)
+..+... +.........||+|+.|+||-... ....+++.+. .+|+++|++++-..
T Consensus 97 ~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~---------~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 97 IKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGL---------YYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp EESSHHHHHHHHHHCTS-EEEEEE--STTSCH---------HHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred eccCHHHHHHhhcccCCCceEEEECCCcccch---------HHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 8777553 333322345899999998873221 0256677766 78999999987665
No 169
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.12 E-value=5.9e-10 Score=100.43 Aligned_cols=101 Identities=20% Similarity=0.180 Sum_probs=80.8
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
+.+|||++||+|..++.+|...+. .+|+++|+++.+++.+++|++.++ ..+++++++|...+... ...|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~----~~V~a~Din~~Av~~a~~N~~~N~----~~~~~v~~~Da~~~l~~---~~~f 126 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGV----EKVTLNDINPDAVELIKKNLELNG----LENEKVFNKDANALLHE---ERKF 126 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCC----CEEEEEeCCHHHHHHHHHHHHHhC----CCceEEEhhhHHHHHhh---cCCC
Confidence 469999999999999999987542 589999999999999999999987 45677887776554321 2369
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
|+|+.|++ +. ...+++.+.+.+++||+++++.
T Consensus 127 D~V~lDP~---Gs----------~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 127 DVVDIDPF---GS----------PAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CEEEECCC---CC----------cHHHHHHHHHHhcCCCEEEEEe
Confidence 99999952 11 1368888888899999999984
No 170
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.12 E-value=5.5e-10 Score=92.14 Aligned_cols=117 Identities=19% Similarity=0.134 Sum_probs=77.5
Q ss_pred HHHhhHHHhhhcCCCC-EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec
Q 041272 81 TIAANGVWKHVVRKGD-TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM 159 (267)
Q Consensus 81 ~~~~~~l~~~~l~~~~-~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~ 159 (267)
..+...+.. ..++. .++|+|||+|-.++.+|.+. .+|+|+|+|++|++.|++.-.... .+...- .
T Consensus 21 tdw~~~ia~--~~~~h~~a~DvG~G~Gqa~~~iae~~------k~VIatD~s~~mL~~a~k~~~~~y-----~~t~~~-m 86 (261)
T KOG3010|consen 21 TDWFKKIAS--RTEGHRLAWDVGTGNGQAARGIAEHY------KEVIATDVSEAMLKVAKKHPPVTY-----CHTPST-M 86 (261)
T ss_pred HHHHHHHHh--hCCCcceEEEeccCCCcchHHHHHhh------hhheeecCCHHHHHHhhcCCCccc-----ccCCcc-c
Confidence 444555543 33444 89999999997778888875 579999999999999988654432 111111 1
Q ss_pred ChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCc-EEEEEEec
Q 041272 160 CHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG-LISMVVYV 221 (267)
Q Consensus 160 ~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG-~l~i~~~~ 221 (267)
...++.++...+.++|+|++. ... |.=+.++++++++|+||+.| .+++-.+.
T Consensus 87 s~~~~v~L~g~e~SVDlI~~A---------qa~-HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 87 SSDEMVDLLGGEESVDLITAA---------QAV-HWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred cccccccccCCCcceeeehhh---------hhH-HhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 112334444445689999876 222 22334689999999998665 77776665
No 171
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.11 E-value=2.2e-10 Score=94.42 Aligned_cols=110 Identities=18% Similarity=0.259 Sum_probs=78.2
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEE-EecChhhhhhcCCCCCcEE
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL-FNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~-~~~~~~~l~~~~~~~~~~d 175 (267)
+|||+|||.|.....+.+..+. ++.+|+++|.|+.+++..+++..... .++.. +.+-..+-.......+.+|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n--~~l~v~acDfsp~Ai~~vk~~~~~~e-----~~~~afv~Dlt~~~~~~~~~~~svD 146 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPN--NRLKVYACDFSPRAIELVKKSSGYDE-----SRVEAFVWDLTSPSLKEPPEEGSVD 146 (264)
T ss_pred hheeeccCCCcccchhhhcCCC--CCeEEEEcCCChHHHHHHHhccccch-----hhhcccceeccchhccCCCCcCccc
Confidence 8999999999999999987542 45899999999999999998876532 33332 2221111122333445788
Q ss_pred EEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 176 LVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+++.-+-. ...+++....+++++.++|||||.+++-+|
T Consensus 147 ~it~IFvL-------SAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 147 IITLIFVL-------SAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred eEEEEEEE-------eccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 77655211 112566778999999999999999999887
No 172
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.10 E-value=1.2e-09 Score=102.16 Aligned_cols=117 Identities=13% Similarity=0.079 Sum_probs=90.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+..+||||||.|.++..+|+.. |+..++|+|++...+..|.+.+.+.+ ..|+.++.++...+...++ +.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~----p~~~~iGiE~~~~~~~~~~~~~~~~~----l~N~~~~~~~~~~~~~~~~-~~s 417 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN----PDALFIGVEVYLNGVANVLKLAGEQN----ITNFLLFPNNLDLILNDLP-NNS 417 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC----CCCCEEEEEeeHHHHHHHHHHHHHcC----CCeEEEEcCCHHHHHHhcC-ccc
Confidence 46689999999999999999985 46899999999999999999887776 6789888887766666654 447
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+|.+..+++- |++........=...++++.+.++|||||.+.+.+-
T Consensus 418 v~~i~i~FPD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 418 LDGIYILFPD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred ccEEEEECCC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 9999998754 222222111112236899999999999999988654
No 173
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.10 E-value=1.2e-09 Score=88.47 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=76.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCC-----CcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESS-----AGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p-----~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~ 165 (267)
..+++..|||--||+|.+.++.|.......| ..+++|.|+++.+++.|++|++..+ ....+.+.+.|..++.
T Consensus 25 ~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag---~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 25 GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG---VEDYIDFIQWDARELP 101 (179)
T ss_dssp T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----CGGEEEEE--GGGGG
T ss_pred CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc---cCCceEEEecchhhcc
Confidence 4678899999999999999998876543000 1138999999999999999999887 4567888887776666
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCcee--echhhHHHHHHHHHhcccC
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVI--TTSETTKMALEAAERILIP 211 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~--~~~~~~~~~l~~~~~~Lkp 211 (267)
..+..+|.|++|+|| ..+.-. ....-+.++++++.++|++
T Consensus 102 ---~~~~~~d~IvtnPPy---G~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 102 ---LPDGSVDAIVTNPPY---GRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp ---GTTSBSCEEEEE--S---TTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred ---cccCCCCEEEECcch---hhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 233479999999766 222111 1134457889999999999
No 174
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=99.09 E-value=2.8e-09 Score=92.57 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=71.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+++++.++|.-+|.|..+..+++.++ .++|+|+|.++.+++.|+++++..+ .++.+++++..++...+..
T Consensus 17 ~~~~ggiyVD~TlG~GGHS~~iL~~l~----~g~vigiD~D~~Al~~ak~~L~~~~-----~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 17 NIKPDGIYIDCTLGFGGHSKAILEQLG----TGRLIGIDRDPQAIAFAKERLSDFE-----GRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred CcCCCCEEEEeCCCChHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHHHHhhcC-----CcEEEEeCCHHHHHHHHHh
Confidence 356888999999999999999999874 3899999999999999999987643 6899999999988775532
Q ss_pred --CCcEEEEEEeCCC
Q 041272 171 --STAVRLVAFNLGY 183 (267)
Q Consensus 171 --~~~~d~ii~~~~~ 183 (267)
...+|.|++|+|.
T Consensus 88 ~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 88 LLVTKIDGILVDLGV 102 (305)
T ss_pred cCCCcccEEEEeccC
Confidence 2369999999987
No 175
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.09 E-value=3.1e-09 Score=87.31 Aligned_cols=121 Identities=13% Similarity=0.170 Sum_probs=96.8
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
....++..++++ +-..+++||||.=||+.++.+|..+++ +++|+++|++++..+.+.+..+..+ ...+++++
T Consensus 59 ~d~g~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~---dGrv~a~eid~~~~~~~~~~~k~ag---v~~KI~~i 130 (237)
T KOG1663|consen 59 PDKGQFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPE---DGRVVAIEIDADAYEIGLELVKLAG---VDHKITFI 130 (237)
T ss_pred hHHHHHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCC---CceEEEEecChHHHHHhHHHHHhcc---ccceeeee
Confidence 334445555543 335679999999999999999999987 8999999999999999998888888 68899999
Q ss_pred ecChhh-hhhcCCC--CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 158 NMCHSR-MEEIVPK--STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 158 ~~~~~~-l~~~~~~--~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
++...+ +.+...+ ...||+++.+. +...+....+++.++||+||++++-
T Consensus 131 ~g~a~esLd~l~~~~~~~tfDfaFvDa------------dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 131 EGPALESLDELLADGESGTFDFAFVDA------------DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred ecchhhhHHHHHhcCCCCceeEEEEcc------------chHHHHHHHHHHHhhcccccEEEEe
Confidence 987764 4444433 46899999882 3455668999999999999999873
No 176
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.06 E-value=3.9e-09 Score=87.12 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=44.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhh
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~ 144 (267)
...+..+|||||-+|.+++.+|+.++. ..|.|+||++..|..|+++++.
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~----r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGP----RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhcc----ceeeEeeccHHHHHHHHHhccc
Confidence 345679999999999999999999875 7899999999999999999875
No 177
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.04 E-value=1.3e-09 Score=89.36 Aligned_cols=141 Identities=18% Similarity=0.184 Sum_probs=99.9
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCc-EEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAG-CVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.|.+|||.+.|-|+.++..+++ ++ +|+.+|.++..++.|+-|--..+. ...+++++.+|..++-+.+.
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r------GA~~VitvEkdp~VLeLa~lNPwSr~l--~~~~i~iilGD~~e~V~~~~- 202 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER------GAIHVITVEKDPNVLELAKLNPWSREL--FEIAIKIILGDAYEVVKDFD- 202 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc------CCcEEEEEeeCCCeEEeeccCCCCccc--cccccEEecccHHHHHhcCC-
Confidence 457999999999999999999988 45 999999999999999887543331 23468999988877766554
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCC-hhhHHHHHHHHHhCCCCceEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGG-REELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
+.+||+|+-|++-+..+ ..--.+++.++++|+|||||+++ -|.+.++. ..-........+.|.+.+|.++.
T Consensus 203 D~sfDaIiHDPPRfS~A------geLYseefY~El~RiLkrgGrlF--HYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 203 DESFDAIIHDPPRFSLA------GELYSEEFYRELYRILKRGGRLF--HYVGNPGKRYRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred ccccceEeeCCCccchh------hhHhHHHHHHHHHHHcCcCCcEE--EEeCCCCcccccCChhHHHHHHHHhcCceeee
Confidence 44899999996532211 11223789999999999999994 34344431 11223334555666677787554
No 178
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.04 E-value=4.5e-09 Score=84.73 Aligned_cols=113 Identities=16% Similarity=0.245 Sum_probs=74.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh-h-hhcCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR-M-EEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~-l-~~~~~ 169 (267)
...+.+|||+|||+|..++.++...+ ..+|+..|.++ .++..+.|++.++. ....++.+...+..+ . .+..
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~----~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~- 115 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG----AARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLL- 115 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-----SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHH-
T ss_pred hcCCceEEEECCccchhHHHHHhccC----CceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCccccccc-
Confidence 45788999999999999999998843 37999999999 99999999988651 123556665544332 2 1222
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...+||+|+.. .++......+.+++-+.++|+++|.+++...
T Consensus 116 ~~~~~D~Ilas---------Dv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 116 EPHSFDVILAS---------DVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp S-SSBSEEEEE---------S--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred ccccCCEEEEe---------cccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 23479999887 5666777788999999999999999666554
No 179
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.02 E-value=9.3e-09 Score=90.40 Aligned_cols=140 Identities=19% Similarity=0.208 Sum_probs=99.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
...+|.+|||+-+|.|.+++.+|+.- ..+|+++|++|.+++..++|++.|+ ....+..+++|...+....
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g-----~~~V~A~diNP~A~~~L~eNi~LN~---v~~~v~~i~gD~rev~~~~-- 254 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKG-----RPKVYAIDINPDAVEYLKENIRLNK---VEGRVEPILGDAREVAPEL-- 254 (341)
T ss_pred hhcCCCEEEEccCCcccchhhhhhcC-----CceEEEEecCHHHHHHHHHHHHhcC---ccceeeEEeccHHHhhhcc--
Confidence 45679999999999999999999873 2359999999999999999999998 4556889998886665433
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChh-hHHHHHHHHHhCCCCceEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGRE-ELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 249 (267)
..+|-|+++.+ ....+++..+.+.+++||++.+..........+ ....+......... ...+..
T Consensus 255 -~~aDrIim~~p-------------~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~-~~~v~~ 319 (341)
T COG2520 255 -GVADRIIMGLP-------------KSAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGY-KVEVLK 319 (341)
T ss_pred -ccCCEEEeCCC-------------CcchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccC-cceEEE
Confidence 46899999842 233578999999999999998776633222111 22344444444321 244444
Q ss_pred EeeecC
Q 041272 250 FQMLNR 255 (267)
Q Consensus 250 ~~~~~~ 255 (267)
..-+++
T Consensus 320 ~r~Vks 325 (341)
T COG2520 320 VRRVKS 325 (341)
T ss_pred EEEecc
Confidence 444443
No 180
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=99.01 E-value=3e-08 Score=81.47 Aligned_cols=157 Identities=13% Similarity=0.174 Sum_probs=101.9
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+++|.+||-+|..+|.....++..+++ .+.|++||.|+......-.-+++ -.|+--+..|+..-..+..
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~---~G~VYaVEfs~r~~rdL~~la~~------R~NIiPIl~DAr~P~~Y~~ 139 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGP---DGVVYAVEFSPRSMRDLLNLAKK------RPNIIPILEDARHPEKYRM 139 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTT---TSEEEEEESSHHHHHHHHHHHHH------STTEEEEES-TTSGGGGTT
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCC---CCcEEEEEecchhHHHHHHHhcc------CCceeeeeccCCChHHhhc
Confidence 45789999999999999999999999985 68999999999765555444443 3577777777665555433
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCC-hhhHHHHHHHHHhCCCCceEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGG-REELEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~ 248 (267)
--..+|+++.|. ..+...+-++.++...||+||.++++.-...... .........-.+.+...+|.+.
T Consensus 140 lv~~VDvI~~DV-----------aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~ 208 (229)
T PF01269_consen 140 LVEMVDVIFQDV-----------AQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPL 208 (229)
T ss_dssp TS--EEEEEEE------------SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEE
T ss_pred ccccccEEEecC-----------CChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChh
Confidence 334799999993 2456667888999999999999998875322111 1122333444555566678777
Q ss_pred EEeeecC--CCCceEEEeec
Q 041272 249 KFQMLNR--PLAPVLVFLFK 266 (267)
Q Consensus 249 ~~~~~~~--~~~p~~~~~~k 266 (267)
....+.. .++-.++...+
T Consensus 209 e~i~LePy~~dH~~vv~~y~ 228 (229)
T PF01269_consen 209 EQITLEPYERDHAMVVGRYR 228 (229)
T ss_dssp EEEE-TTTSTTEEEEEEEE-
T ss_pred eEeccCCCCCCcEEEEEEec
Confidence 7666655 35555554443
No 181
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.99 E-value=2.5e-09 Score=93.10 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=65.2
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++++|||||||+|.+|..+++. +.+|+++|+++.+++.+++++...+ ...+++++++|..... .
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~------~~~V~avEiD~~li~~l~~~~~~~~---~~~~v~ii~~Dal~~~---~- 99 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQL------AKKVIAIEIDPRMVAELKKRFQNSP---LASKLEVIEGDALKTE---F- 99 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHh------CCcEEEEECCHHHHHHHHHHHHhcC---CCCcEEEEECCHhhhc---c-
Confidence 4678899999999999999999987 3689999999999999999987654 2468999987765432 1
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
..+|.+++|++|
T Consensus 100 -~~~d~VvaNlPY 111 (294)
T PTZ00338 100 -PYFDVCVANVPY 111 (294)
T ss_pred -cccCEEEecCCc
Confidence 257999999887
No 182
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.98 E-value=2.9e-08 Score=79.88 Aligned_cols=127 Identities=20% Similarity=0.146 Sum_probs=88.4
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
.++.+..-.++...--.|.++||+-+|+|.++++.+.+. ..+++.||.+..++...++|++..+ ...++.++
T Consensus 27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-----A~~~~~vE~~~~a~~~l~~N~~~l~---~~~~~~~~ 98 (187)
T COG0742 27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-----AARVVFVEKDRKAVKILKENLKALG---LEGEARVL 98 (187)
T ss_pred hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-----CceEEEEecCHHHHHHHHHHHHHhC---CccceEEE
Confidence 444444444433311257899999999999999999883 4799999999999999999998876 45778888
Q ss_pred ecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHH--HHhcccCCcEEEEEEe
Q 041272 158 NMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEA--AERILIPGGLISMVVY 220 (267)
Q Consensus 158 ~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~--~~~~LkpgG~l~i~~~ 220 (267)
..+...+.........||+|+.|+||--. .-.....+.. -..+|+|+|.+++-..
T Consensus 99 ~~da~~~L~~~~~~~~FDlVflDPPy~~~--------l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 99 RNDALRALKQLGTREPFDLVFLDPPYAKG--------LLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred eecHHHHHHhcCCCCcccEEEeCCCCccc--------hhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 77776554444443469999999877210 1111222222 3567999999977543
No 183
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.96 E-value=3.1e-09 Score=91.84 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=60.9
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..++++. .+|+|+|++++|++.+++++.. .+++++++|..++. .+
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~------~~v~avE~d~~~~~~~~~~~~~-------~~v~~i~~D~~~~~---~~ 102 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERA------AKVTAVEIDRDLAPILAETFAE-------DNLTIIEGDALKVD---LS 102 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhC------CcEEEEECCHHHHHHHHHhhcc-------CceEEEEChhhcCC---HH
Confidence 45678899999999999999999983 5899999999999999987642 47888887765542 11
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
+...+.+++|++|
T Consensus 103 ~~~~~~vv~NlPY 115 (272)
T PRK00274 103 ELQPLKVVANLPY 115 (272)
T ss_pred HcCcceEEEeCCc
Confidence 1115899999877
No 184
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.95 E-value=4.2e-09 Score=90.35 Aligned_cols=76 Identities=21% Similarity=0.184 Sum_probs=62.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++.. ..+++++++|..++. .+
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~L~~~------~~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~---~~ 90 (258)
T PRK14896 26 EDTDGDPVLEIGPGKGALTDELAKR------AKKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD---LP 90 (258)
T ss_pred CCCCcCeEEEEeCccCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC---ch
Confidence 4567899999999999999999988 36899999999999999988754 357888887664432 12
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
.+|.|++|++|
T Consensus 91 --~~d~Vv~NlPy 101 (258)
T PRK14896 91 --EFNKVVSNLPY 101 (258)
T ss_pred --hceEEEEcCCc
Confidence 47999999877
No 185
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.95 E-value=3.5e-09 Score=92.05 Aligned_cols=102 Identities=23% Similarity=0.361 Sum_probs=76.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+-.+..|||+|||||.++...|+.. ..+|++||.|.-+ +.|++.+..|+ ....++++++..+++ .++ -
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG-----A~~V~aVe~S~ia-~~a~~iv~~N~---~~~ii~vi~gkvEdi-~LP--~ 125 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG-----ARKVYAVEASSIA-DFARKIVKDNG---LEDVITVIKGKVEDI-ELP--V 125 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC-----cceEEEEechHHH-HHHHHHHHhcC---ccceEEEeecceEEE-ecC--c
Confidence 4568899999999999999999873 4799999988755 99999999988 456689998888777 333 3
Q ss_pred CcEEEEEEe-CCCCCCCCCceeechhhHHHHHHHH----HhcccCCcEEE
Q 041272 172 TAVRLVAFN-LGYLPGGDKSVITTSETTKMALEAA----ERILIPGGLIS 216 (267)
Q Consensus 172 ~~~d~ii~~-~~~lp~~d~~~~~~~~~~~~~l~~~----~~~LkpgG~l~ 216 (267)
.++|+|++- +||.-. .+.+|..+ =+.|+|||.++
T Consensus 126 eKVDiIvSEWMGy~Ll-----------~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 126 EKVDIIVSEWMGYFLL-----------YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred cceeEEeehhhhHHHH-----------HhhhhhhhhhhhhhccCCCceEc
Confidence 479999987 233111 12233332 36799999986
No 186
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.94 E-value=2.2e-08 Score=85.71 Aligned_cols=76 Identities=22% Similarity=0.188 Sum_probs=59.4
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++.+|||+|||+|.++..++++. .+|+++|+++.+++.+++++.. ..+++++.+|...+.. .
T Consensus 26 ~~~~~~~VLEiG~G~G~lt~~L~~~~------~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~---~ 90 (253)
T TIGR00755 26 NVLEGDVVLEIGPGLGALTEPLLKRA------KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL---P 90 (253)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHHhC------CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh---h
Confidence 45678899999999999999999984 4699999999999999987753 3578888776644321 1
Q ss_pred CCcEE---EEEEeCCC
Q 041272 171 STAVR---LVAFNLGY 183 (267)
Q Consensus 171 ~~~~d---~ii~~~~~ 183 (267)
.+| .+++|++|
T Consensus 91 --~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 --DFPKQLKVVSNLPY 104 (253)
T ss_pred --HcCCcceEEEcCCh
Confidence 244 88999755
No 187
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=98.93 E-value=1.6e-08 Score=87.85 Aligned_cols=84 Identities=25% Similarity=0.356 Sum_probs=62.6
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.++++..++|.--|.|..+..+.+.++ +++|+|+|.++++++.|++++.... .++.++++...++...+..
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~~~----~~~li~~DrD~~a~~~a~~~l~~~~-----~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEKLP----NGRLIGIDRDPEALERAKERLKKFD-----DRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT-T----T-EEEEEES-HHHHHHHHCCTCCCC-----TTEEEEES-GGGHHHHHHH
T ss_pred CcCCCceEEeecCCcHHHHHHHHHhCC----CCeEEEecCCHHHHHHHHHHHhhcc-----ceEEEEeccHHHHHHHHHH
Confidence 367888999999999999999999875 4999999999999999999987643 7899999988888775433
Q ss_pred ---CCcEEEEEEeCCC
Q 041272 171 ---STAVRLVAFNLGY 183 (267)
Q Consensus 171 ---~~~~d~ii~~~~~ 183 (267)
...+|.|++|+|.
T Consensus 88 ~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 88 LNGINKVDGILFDLGV 103 (310)
T ss_dssp TTTTS-EEEEEEE-S-
T ss_pred ccCCCccCEEEEcccc
Confidence 2479999999987
No 188
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.89 E-value=1.2e-08 Score=93.72 Aligned_cols=104 Identities=21% Similarity=0.289 Sum_probs=74.2
Q ss_pred CCEEEEecCCCChHHHHHHHhc---CCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 95 GDTVVDATCGNGYDTLMMLKMV---ADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~---~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+..|||+|||+|.++...++.. +. ..+|++||.++.++...++.++.++ +.++|++++++.+++...
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~---a~~VyAVEkn~~A~~~l~~~v~~n~---w~~~V~vi~~d~r~v~lp---- 256 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGG---AVKVYAVEKNPNAVVTLQKRVNANG---WGDKVTVIHGDMREVELP---- 256 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCC---ESEEEEEESSTHHHHHHHHHHHHTT---TTTTEEEEES-TTTSCHS----
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCC---CeEEEEEcCCHhHHHHHHHHHHhcC---CCCeEEEEeCcccCCCCC----
Confidence 4689999999999987766542 21 3699999999999988888777776 568899999877666542
Q ss_pred CcEEEEEEeC-CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 172 TAVRLVAFNL-GYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 172 ~~~d~ii~~~-~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
.++|+||+-+ |.+-.. +...+.|..+-|.|||||+++
T Consensus 257 ekvDIIVSElLGsfg~n--------El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 257 EKVDIIVSELLGSFGDN--------ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp S-EEEEEE---BTTBTT--------TSHHHHHHHGGGGEEEEEEEE
T ss_pred CceeEEEEeccCCcccc--------ccCHHHHHHHHhhcCCCCEEe
Confidence 2799999873 432222 223567888899999999985
No 189
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.88 E-value=2.1e-08 Score=89.97 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=82.8
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
-+|||+.||+|..++.++.+.+. ..+|+++|+++++++.+++|++.++ ..++++++.|...+.... ...||
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~g---a~~Vv~nD~n~~Av~~i~~N~~~N~----~~~~~v~~~Da~~~l~~~--~~~fD 116 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEG---VREVFANDINPKAVESIKNNVEYNS----VENIEVPNEDAANVLRYR--NRKFH 116 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCC---CCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEchhHHHHHHHh--CCCCC
Confidence 58999999999999999987521 3689999999999999999999887 457888888777665432 23699
Q ss_pred EEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 176 LVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+|..|+... +..+++.+.+.+++||++++++
T Consensus 117 vIdlDPfGs-------------~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 117 VIDIDPFGT-------------PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred EEEeCCCCC-------------cHHHHHHHHHhcccCCEEEEEe
Confidence 999995211 1378999999999999999985
No 190
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.88 E-value=8.2e-09 Score=82.15 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=63.0
Q ss_pred EEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHH
Q 041272 126 YGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA 205 (267)
Q Consensus 126 ~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~ 205 (267)
+|+|+|++|++.|+++.+.... ....++++++++..++ ..++.+||+|++.. .+++.++..++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~-~~~~~i~~~~~d~~~l---p~~~~~fD~v~~~~---------~l~~~~d~~~~l~ei 67 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR-SCYKCIEWIEGDAIDL---PFDDCEFDAVTMGY---------GLRNVVDRLRAMKEM 67 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc-cCCCceEEEEechhhC---CCCCCCeeEEEecc---------hhhcCCCHHHHHHHH
Confidence 4899999999999887653210 0134789998777655 33455899999874 334445678999999
Q ss_pred HhcccCCcEEEEEEecC
Q 041272 206 ERILIPGGLISMVVYVG 222 (267)
Q Consensus 206 ~~~LkpgG~l~i~~~~~ 222 (267)
+|+|||||.+++.++..
T Consensus 68 ~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 68 YRVLKPGSRVSILDFNK 84 (160)
T ss_pred HHHcCcCeEEEEEECCC
Confidence 99999999999988753
No 191
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.88 E-value=9.6e-09 Score=81.26 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=67.5
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEE
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL 176 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ 176 (267)
.|+|+.||.|..++.+|+.. .+|++||+++..++.|+.|++-.| ...+++++++|..++.........+|+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~------~~Viaidid~~~~~~a~hNa~vYG---v~~~I~~i~gD~~~~~~~~~~~~~~D~ 72 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF------DRVIAIDIDPERLECAKHNAEVYG---VADNIDFICGDFFELLKRLKSNKIFDV 72 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-------EEEEEES-HHHHHHHHHHHHHTT----GGGEEEEES-HHHHGGGB------SE
T ss_pred EEEEeccCcCHHHHHHHHhC------CeEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEeCCHHHHHhhccccccccE
Confidence 79999999999999999984 689999999999999999999988 578999999998877654433222799
Q ss_pred EEEeCCCC-----CCCCCce--eechhhHHHHHHHHHhcc
Q 041272 177 VAFNLGYL-----PGGDKSV--ITTSETTKMALEAAERIL 209 (267)
Q Consensus 177 ii~~~~~l-----p~~d~~~--~~~~~~~~~~l~~~~~~L 209 (267)
|+.++|+= ......+ ...+-...++++.+.++-
T Consensus 73 vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t 112 (163)
T PF09445_consen 73 VFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT 112 (163)
T ss_dssp EEE---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-
T ss_pred EEECCCCCCccccccCccCHHHccCCCCHHHHHHHHHhhC
Confidence 99997661 1111111 112334567777766653
No 192
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.87 E-value=9e-08 Score=81.86 Aligned_cols=85 Identities=21% Similarity=0.320 Sum_probs=73.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+++++..+|..-|.|..+..+.+.++. .++++|+|.++.+++.|++.+...+ .++.++++...++...+..
T Consensus 20 ~~~~~giyiD~TlG~GGHS~~iL~~l~~---~~~li~~DrD~~Ai~~a~~~l~~~~-----~r~~~v~~~F~~l~~~l~~ 91 (314)
T COG0275 20 APKPDGIYIDGTLGAGGHSRAILEKLPD---LGRLIGIDRDPQAIAIAKERLKEFD-----GRVTLVHGNFANLAEALKE 91 (314)
T ss_pred ccCCCcEEEEecCCCcHhHHHHHHhCCC---CCeEEEEcCCHHHHHHHHHHhhccC-----CcEEEEeCcHHHHHHHHHh
Confidence 5678899999999999999999999865 5789999999999999999998854 7999999988888776543
Q ss_pred C--CcEEEEEEeCCC
Q 041272 171 S--TAVRLVAFNLGY 183 (267)
Q Consensus 171 ~--~~~d~ii~~~~~ 183 (267)
. ..+|-|++|+|.
T Consensus 92 ~~i~~vDGiL~DLGV 106 (314)
T COG0275 92 LGIGKVDGILLDLGV 106 (314)
T ss_pred cCCCceeEEEEeccC
Confidence 2 479999999877
No 193
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.86 E-value=2.3e-08 Score=84.84 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=77.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
.....+|||||+|+|.++..+++.. |+.+++.+|. |+.++.+++ ..+++++.+|.. +.++.
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~----P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f---~~~P~- 158 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY----PNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF---DPLPV- 158 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS----TTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT---TCCSS-
T ss_pred ccCccEEEeccCcchHHHHHHHHHC----CCCcceeecc-Hhhhhcccc----------ccccccccccHH---hhhcc-
Confidence 4456799999999999999999985 5699999998 888888887 268999876653 33322
Q ss_pred CcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCC--cEEEEEEecCC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPG--GLISMVVYVGH 223 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~Lkpg--G~l~i~~~~~~ 223 (267)
+|+++.. .++|. .+....+|+++++.|+|| |+|+|.+..-.
T Consensus 159 --~D~~~l~---------~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 159 --ADVYLLR---------HVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp --ESEEEEE---------SSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred --ccceeee---------hhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 7888777 45552 345689999999999999 99999887533
No 194
>PLN02823 spermine synthase
Probab=98.85 E-value=6.3e-08 Score=85.73 Aligned_cols=117 Identities=18% Similarity=0.085 Sum_probs=82.0
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
...+||.||+|.|..+..+++..+ ..+|+.||+++++++.|++.+...+.....++++++.+|........ ...
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~----~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--~~~ 176 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT----VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--DEK 176 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC----CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--CCC
Confidence 446999999999999999888643 36899999999999999998864321112478999988776654332 347
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHH-HHHhcccCCcEEEEEE
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALE-AAERILIPGGLISMVV 219 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~ 219 (267)
||+|+.++.. |...... ..-...++++ .+.+.|+|||++++..
T Consensus 177 yDvIi~D~~d-p~~~~~~--~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 177 FDVIIGDLAD-PVEGGPC--YQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ccEEEecCCC-ccccCcc--hhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999999522 1100000 0011257887 8899999999987643
No 195
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.84 E-value=1.8e-08 Score=86.79 Aligned_cols=105 Identities=19% Similarity=0.252 Sum_probs=78.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+..|||+|||+|.++...|+. | ..+|++||.| +|.+.|++..+.|+ +..++.++.+..+++.- + .+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-G----A~~vYAvEAS-~MAqyA~~Lv~~N~---~~~rItVI~GKiEdieL--P--Ek 243 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-G----AKKVYAVEAS-EMAQYARKLVASNN---LADRITVIPGKIEDIEL--P--EK 243 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-C----cceEEEEehh-HHHHHHHHHHhcCC---ccceEEEccCccccccC--c--hh
Confidence 5779999999999999998886 2 4799999976 58899999988877 67899999877665542 2 26
Q ss_pred EEEEEEeC-CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 174 VRLVAFNL-GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 174 ~d~ii~~~-~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+|++|+.+ +++-.. +...+..-.+.+.|||.|.++=+.
T Consensus 244 ~DviISEPMG~mL~N--------ERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 244 VDVIISEPMGYMLVN--------ERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred ccEEEeccchhhhhh--------HHHHHHHHHHHhhcCCCCcccCcc
Confidence 89999874 443322 222333344679999999986443
No 196
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.84 E-value=4.2e-08 Score=86.38 Aligned_cols=127 Identities=20% Similarity=0.285 Sum_probs=78.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCC---CCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVAD---ESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~---~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
..++.+|+|.+||+|.+...+.+++.. ..+..+++|+|+++.++..|+-++...+. ...+..+..++.- ....
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~--~~~~~~i~~~d~l--~~~~ 119 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI--DNSNINIIQGDSL--ENDK 119 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH--HCBGCEEEES-TT--TSHS
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc--ccccccccccccc--cccc
Confidence 456778999999999999988875410 00147999999999999999988866541 1222335544332 2211
Q ss_pred C-CCCcEEEEEEeCCCCCC--CCCceee----------chhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 169 P-KSTAVRLVAFNLGYLPG--GDKSVIT----------TSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 169 ~-~~~~~d~ii~~~~~lp~--~d~~~~~----------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
. ....||+|++|+|+-.. .+..... .......++..+.+.||+||++.++...+
T Consensus 120 ~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 120 FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 1 23579999999988443 1111110 11222458899999999999998888754
No 197
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.83 E-value=2.4e-07 Score=78.88 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=85.1
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+...+||-||-|.|..+..+.++.+ -.+|+.||+++..++.|++.+.........++++++.+|.........+.
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~----~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~- 149 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPP----VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEE- 149 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-----SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CCcCceEEEcCCChhhhhhhhhcCC----cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCC-
Confidence 4578999999999999999987632 36999999999999999998765431112468999988877665544332
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|+.++.. |..... .-...++++.+.+.|+|||++++...
T Consensus 150 ~yDvIi~D~~d-p~~~~~----~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 150 KYDVIIVDLTD-PDGPAP----NLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp -EEEEEEESSS-TTSCGG----GGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccEEEEeCCC-CCCCcc----cccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 79999999644 222111 02236899999999999999988763
No 198
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=8.7e-08 Score=80.52 Aligned_cols=135 Identities=17% Similarity=0.163 Sum_probs=96.7
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
++..+....+.||.+|+|-|+|+|.++..+++.+++ .++++.+|+.+...+.|.+..++.+ +..+++++.-|.-
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~p---tGhl~tfefH~~Ra~ka~eeFr~hg---i~~~vt~~hrDVc 167 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAP---TGHLYTFEFHETRAEKALEEFREHG---IGDNVTVTHRDVC 167 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCc---CcceEEEEecHHHHHHHHHHHHHhC---CCcceEEEEeecc
Confidence 333444457899999999999999999999999976 7999999999999999999999988 6788888764432
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCC
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSV 242 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (267)
... +..++..+|.|+.|+ +.+..++-.++++||.+|.- +.++.. -.++++.-++.+..
T Consensus 168 ~~G-F~~ks~~aDaVFLDl--------------PaPw~AiPha~~~lk~~g~r-~csFSP------CIEQvqrtce~l~~ 225 (314)
T KOG2915|consen 168 GSG-FLIKSLKADAVFLDL--------------PAPWEAIPHAAKILKDEGGR-LCSFSP------CIEQVQRTCEALRS 225 (314)
T ss_pred cCC-ccccccccceEEEcC--------------CChhhhhhhhHHHhhhcCce-EEeccH------HHHHHHHHHHHHHh
Confidence 221 222255789999995 33356777788889977742 233321 23455555555554
Q ss_pred Cce
Q 041272 243 DDW 245 (267)
Q Consensus 243 ~~~ 245 (267)
.+|
T Consensus 226 ~gf 228 (314)
T KOG2915|consen 226 LGF 228 (314)
T ss_pred CCC
Confidence 444
No 199
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.82 E-value=8e-08 Score=80.54 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=75.8
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHH-HHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKS-TSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~-a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
.++.+|||+|||||.++..+++. | ..+|+|+|+++.|+.. .+++.+-.. ....|++. ... .+...+-
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g----a~~v~avD~~~~~l~~~l~~~~~v~~--~~~~ni~~--~~~---~~~~~d~ 141 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G----AKEVYGVDVGYNQLAEKLRQDERVKV--LERTNIRY--VTP---ADIFPDF 141 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C----CCEEEEEeCCHHHHHHHHhcCCCeeE--eecCCccc--CCH---hHcCCCc
Confidence 36779999999999999999986 3 3689999999988875 222211000 00122221 111 1221122
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCCh-------------hhHHHHHHHHH
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGR-------------EELEAVEAFAR 238 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------------~~~~~~~~~~~ 238 (267)
..+|+++..+ ..++..+.++|+| |.+++..-+....+. .....+.+...
T Consensus 142 ~~~DvsfiS~-----------------~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~ 203 (228)
T TIGR00478 142 ATFDVSFISL-----------------ISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVID 203 (228)
T ss_pred eeeeEEEeeh-----------------HhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHH
Confidence 2567666553 2478899999999 877765533221111 11233445555
Q ss_pred hCCCCceEEEEEee
Q 041272 239 SLSVDDWICCKFQM 252 (267)
Q Consensus 239 ~l~~~~~~~~~~~~ 252 (267)
.....+|.+..+..
T Consensus 204 ~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 204 KGESPDFQEKKIIF 217 (228)
T ss_pred HHHcCCCeEeeEEE
Confidence 55556777766544
No 200
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.78 E-value=1.1e-07 Score=82.48 Aligned_cols=141 Identities=20% Similarity=0.252 Sum_probs=99.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
...++.+|||+++|.|.-+..+|+.++. .+.|++.|+++..+...++++++.| ..++.....|.........
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~---~g~i~A~D~~~~Rl~~l~~~~~r~g----~~~v~~~~~D~~~~~~~~~- 153 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGN---KGEIVANDISPKRLKRLKENLKRLG----VFNVIVINADARKLDPKKP- 153 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTT---TSEEEEEESSHHHHHHHHHHHHHTT-----SSEEEEESHHHHHHHHHH-
T ss_pred cccccccccccccCCCCceeeeeecccc---hhHHHHhccCHHHHHHHHHHHHhcC----CceEEEEeecccccccccc-
Confidence 4568899999999999999999999864 5899999999999999999999988 6777777655554432221
Q ss_pred CCcEEEEEEeCCC-----CCCCCCceee--------chhhHHHHHHHHHhcc----cCCcEEEEEEecCCCCChhhHHHH
Q 041272 171 STAVRLVAFNLGY-----LPGGDKSVIT--------TSETTKMALEAAERIL----IPGGLISMVVYVGHPGGREELEAV 233 (267)
Q Consensus 171 ~~~~d~ii~~~~~-----lp~~d~~~~~--------~~~~~~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~ 233 (267)
...||.|+.|.+. +......... ......++|+++.+.+ ||||+++.+++.-.+ .+....+
T Consensus 154 ~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~--eENE~vV 231 (283)
T PF01189_consen 154 ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP--EENEEVV 231 (283)
T ss_dssp TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG--GGTHHHH
T ss_pred ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH--HHHHHHH
Confidence 1259999999654 1111000000 1233478999999999 999999888764322 2334456
Q ss_pred HHHHHhCC
Q 041272 234 EAFARSLS 241 (267)
Q Consensus 234 ~~~~~~l~ 241 (267)
+.+++..+
T Consensus 232 ~~fl~~~~ 239 (283)
T PF01189_consen 232 EKFLKRHP 239 (283)
T ss_dssp HHHHHHST
T ss_pred HHHHHhCC
Confidence 67777643
No 201
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.77 E-value=1.3e-07 Score=77.17 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=81.8
Q ss_pred hhHHHhhhcCCCCE-EEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 84 ANGVWKHVVRKGDT-VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 84 ~~~l~~~~l~~~~~-VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
...+++..+.+..+ |||||||||-.+..+|+.++ ...-.--|.+++...-.++.+...+.+.+..-+.+ .....
T Consensus 14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP----~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~l-Dv~~~ 88 (204)
T PF06080_consen 14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP----HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLAL-DVSAP 88 (204)
T ss_pred HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC----CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEe-ecCCC
Confidence 33444445665555 99999999999999999974 58888999999987777777766552212222221 11111
Q ss_pred hhhhc---CCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 163 RMEEI---VPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 163 ~l~~~---~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
.+.-. ......||.|++. .++| ..+..+.+++.+.++|++||.|++..+...
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~---------N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~ 145 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCI---------NMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNR 145 (204)
T ss_pred CCccccccccCCCCcceeeeh---------hHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence 11111 0123478888765 2333 234568899999999999999988765443
No 202
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=4.7e-07 Score=73.95 Aligned_cols=125 Identities=21% Similarity=0.213 Sum_probs=83.9
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
..+.++.... ..++++++|+|||+-+|.++..+++.++. +.+|+|+|+.|-. ...+|.++
T Consensus 31 ~KL~el~~k~--~i~~~~~~ViDLGAAPGgWsQva~~~~~~---~~~ivavDi~p~~---------------~~~~V~~i 90 (205)
T COG0293 31 YKLLELNEKF--KLFKPGMVVVDLGAAPGGWSQVAAKKLGA---GGKIVAVDILPMK---------------PIPGVIFL 90 (205)
T ss_pred HHHHHHHHhc--CeecCCCEEEEcCCCCCcHHHHHHHHhCC---CCcEEEEECcccc---------------cCCCceEE
Confidence 3444444444 34788999999999999999999999876 5679999998732 13457777
Q ss_pred ecChhh------hhhcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 158 NMCHSR------MEEIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 158 ~~~~~~------l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
++|..+ +...+. ...+|+|++|+..--.....++| .......+++-+..+|+|||.+++-++.+.
T Consensus 91 q~d~~~~~~~~~l~~~l~-~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 91 QGDITDEDTLEKLLEALG-GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred eeeccCccHHHHHHHHcC-CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 665442 222232 22579999996431112222232 123346677888899999999999998654
No 203
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.76 E-value=1.3e-07 Score=77.12 Aligned_cols=116 Identities=17% Similarity=0.239 Sum_probs=69.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+++..|-|+|||.+.++..+.. ..+|+..|+... ..+|. . .|+...+-++.
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~-------~~~V~SfDLva~-----------------n~~Vt--a---cdia~vPL~~~ 121 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN-------KHKVHSFDLVAP-----------------NPRVT--A---CDIANVPLEDE 121 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S----------EEEEESS-S-----------------STTEE--E---S-TTS-S--TT
T ss_pred CCCEEEEECCCchHHHHHhccc-------CceEEEeeccCC-----------------CCCEE--E---ecCccCcCCCC
Confidence 4567999999999988855432 257999998642 12222 2 34455555677
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEee
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQM 252 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (267)
.+|++|+++.. +.++...+++|+.|+|||||.|.|...... ...++.|.+.+..-+|.....+.
T Consensus 122 svDv~VfcLSL----------MGTn~~~fi~EA~RvLK~~G~L~IAEV~SR------f~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 122 SVDVAVFCLSL----------MGTNWPDFIREANRVLKPGGILKIAEVKSR------FENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp -EEEEEEES-------------SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-------S-HHHHHHHHHCTTEEEEEEE-
T ss_pred ceeEEEEEhhh----------hCCCcHHHHHHHHheeccCcEEEEEEeccc------CcCHHHHHHHHHHCCCeEEeccc
Confidence 99999999633 335667999999999999999999887432 22456777777777888777544
Q ss_pred e
Q 041272 253 L 253 (267)
Q Consensus 253 ~ 253 (267)
.
T Consensus 186 ~ 186 (219)
T PF05148_consen 186 S 186 (219)
T ss_dssp -
T ss_pred C
Confidence 3
No 204
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=6.4e-07 Score=72.28 Aligned_cols=155 Identities=12% Similarity=0.173 Sum_probs=104.3
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+++|.+||=+|..+|....+++..++. +.+++||.|+.+....-.-+++ -.|+--+..|+..-..+..
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~----G~iYaVEfs~R~~reLl~~a~~------R~Ni~PIL~DA~~P~~Y~~ 141 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGE----GRIYAVEFSPRPMRELLDVAEK------RPNIIPILEDARKPEKYRH 141 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCC----CcEEEEEecchhHHHHHHHHHh------CCCceeeecccCCcHHhhh
Confidence 45789999999999999999999999864 8999999999887665555544 2466666666544333221
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhh-HHHHHHHHHhCCCCceEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREE-LEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 248 (267)
-=..+|+++.+. ..+...+-+..++...||+||.++++.-........+ .+....-.+.+....|.+.
T Consensus 142 ~Ve~VDviy~DV-----------AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~ 210 (231)
T COG1889 142 LVEKVDVIYQDV-----------AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEIL 210 (231)
T ss_pred hcccccEEEEec-----------CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceee
Confidence 112589999883 2345556778899999999998887765433322222 2233345566666777777
Q ss_pred EEeeecC--CCCceEEEee
Q 041272 249 KFQMLNR--PLAPVLVFLF 265 (267)
Q Consensus 249 ~~~~~~~--~~~p~~~~~~ 265 (267)
..-.+.. .++-.++...
T Consensus 211 e~~~LePye~DH~~i~~~~ 229 (231)
T COG1889 211 EVVDLEPYEKDHALIVAKY 229 (231)
T ss_pred EEeccCCcccceEEEEEee
Confidence 6666555 3555555443
No 205
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.74 E-value=2.1e-07 Score=82.55 Aligned_cols=122 Identities=14% Similarity=0.179 Sum_probs=89.6
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCC----------------------------c-------EEEEEeCChHHH
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSA----------------------------G-------CVYGLDIQSEAL 135 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~----------------------------~-------~v~giD~s~~~i 135 (267)
.-+++..++|--||+|.+.++.|......-|+ + .++|+|+++.++
T Consensus 188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i 267 (381)
T COG0116 188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI 267 (381)
T ss_pred CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence 34566799999999999999999764210010 1 378999999999
Q ss_pred HHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCC-CCCCCCceeechhhHHHHHHHHHhcccCCcE
Q 041272 136 KSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGY-LPGGDKSVITTSETTKMALEAAERILIPGGL 214 (267)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~-lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~ 214 (267)
+.|+.|+++.| +.+.|+|.+++..++.... ..+|++|+|+|| ..-.+.. ....-+.++.+.+.+.++--+.
T Consensus 268 ~~Ak~NA~~AG---v~d~I~f~~~d~~~l~~~~---~~~gvvI~NPPYGeRlg~~~--~v~~LY~~fg~~lk~~~~~ws~ 339 (381)
T COG0116 268 EGAKANARAAG---VGDLIEFKQADATDLKEPL---EEYGVVISNPPYGERLGSEA--LVAKLYREFGRTLKRLLAGWSR 339 (381)
T ss_pred HHHHHHHHhcC---CCceEEEEEcchhhCCCCC---CcCCEEEeCCCcchhcCChh--hHHHHHHHHHHHHHHHhcCCce
Confidence 99999999998 6888999998887776654 368999999988 2222110 0112456677777788887788
Q ss_pred EEEEEe
Q 041272 215 ISMVVY 220 (267)
Q Consensus 215 l~i~~~ 220 (267)
++++..
T Consensus 340 ~v~tt~ 345 (381)
T COG0116 340 YVFTTS 345 (381)
T ss_pred EEEEcc
Confidence 877664
No 206
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.73 E-value=3.2e-07 Score=89.23 Aligned_cols=119 Identities=16% Similarity=0.161 Sum_probs=80.0
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCC--------------------------------------CCcEEEEEeCChHH
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADES--------------------------------------SAGCVYGLDIQSEA 134 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~--------------------------------------p~~~v~giD~s~~~ 134 (267)
+++..++|.+||+|.+.++.|....... ...+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 5678999999999999999886421000 01379999999999
Q ss_pred HHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHH---HHHHHhcccC
Q 041272 135 LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMA---LEAAERILIP 211 (267)
Q Consensus 135 i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~---l~~~~~~Lkp 211 (267)
++.|++|+..++ ....+++.++|..++.... ....+|+|++|+||-..... ..+..++ +.+..+...+
T Consensus 269 v~~A~~N~~~~g---~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPPYg~r~~~-----~~~l~~lY~~lg~~lk~~~~ 339 (702)
T PRK11783 269 IQAARKNARRAG---VAELITFEVKDVADLKNPL-PKGPTGLVISNPPYGERLGE-----EPALIALYSQLGRRLKQQFG 339 (702)
T ss_pred HHHHHHHHHHcC---CCcceEEEeCChhhccccc-ccCCCCEEEECCCCcCccCc-----hHHHHHHHHHHHHHHHHhCC
Confidence 999999999988 4567888887776553322 12368999999888332110 1122223 3333444458
Q ss_pred CcEEEEEEe
Q 041272 212 GGLISMVVY 220 (267)
Q Consensus 212 gG~l~i~~~ 220 (267)
|+.+++.+.
T Consensus 340 g~~~~llt~ 348 (702)
T PRK11783 340 GWNAALFSS 348 (702)
T ss_pred CCeEEEEeC
Confidence 888876554
No 207
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.71 E-value=3e-07 Score=79.39 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=84.2
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
.+||-||-|.|..+..+.++... .+++.||+++..++.|++.+.........+|++++.+|...+...... +||
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~v----e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~--~fD 151 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPV----ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE--KFD 151 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCc----ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC--cCC
Confidence 59999999999999999998643 799999999999999999987643111248899988777655543332 799
Q ss_pred EEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 176 LVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 176 ~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
+|+.|...--..... -...++++.+.+.|+++|+++..
T Consensus 152 vIi~D~tdp~gp~~~-----Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 152 VIIVDSTDPVGPAEA-----LFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEEcCCCCCCcccc-----cCCHHHHHHHHHhcCCCcEEEEe
Confidence 999994221000000 11268999999999999999876
No 208
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.69 E-value=2.6e-08 Score=73.51 Aligned_cols=105 Identities=20% Similarity=0.264 Sum_probs=46.9
Q ss_pred EEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEEE
Q 041272 99 VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLVA 178 (267)
Q Consensus 99 LDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii 178 (267)
||+|+..|..+..+++.+... ...+++++|..+. .+.+++.+++.+ ...+++++.++..+...... ..++|+++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~-~~~~~~~vD~~~~-~~~~~~~~~~~~---~~~~~~~~~g~s~~~l~~~~-~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN-GRGKLYSVDPFPG-DEQAQEIIKKAG---LSDRVEFIQGDSPDFLPSLP-DGPIDLIF 74 (106)
T ss_dssp ---------------------------EEEESS-------------GG---G-BTEEEEES-THHHHHHHH-H--EEEEE
T ss_pred Ccccccccccccccccccccc-ccCCEEEEECCCc-ccccchhhhhcC---CCCeEEEEEcCcHHHHHHcC-CCCEEEEE
Confidence 689999999999999877651 1137999999996 444445554433 35689999988775544332 34799999
Q ss_pred EeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 179 FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 179 ~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+ ..|..+.....++.+.+.|+|||++++-+
T Consensus 75 iD----------g~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 75 ID----------GDHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp EE----------S---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred EC----------CCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 99 34556677888999999999999998754
No 209
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.69 E-value=1.9e-07 Score=78.52 Aligned_cols=127 Identities=16% Similarity=0.242 Sum_probs=85.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
...++||||.|.|..|..++..+ .+|++.|.|+.|... +++.| .+++. ..++.+ .+.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f------~~v~aTE~S~~Mr~r----L~~kg-------~~vl~--~~~w~~---~~~~ 151 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF------KEVYATEASPPMRWR----LSKKG-------FTVLD--IDDWQQ---TDFK 151 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc------ceEEeecCCHHHHHH----HHhCC-------CeEEe--hhhhhc---cCCc
Confidence 35689999999999999999986 579999999998544 44433 23332 222322 2357
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec---------C--CC--------CChhhHHHHH
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV---------G--HP--------GGREELEAVE 234 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~---------~--~~--------~~~~~~~~~~ 234 (267)
||+|.+- .++.....+...|+.+++.|+|+|++++.... + +. .+..-.+.+.
T Consensus 152 fDvIscL---------NvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~ 222 (265)
T PF05219_consen 152 FDVISCL---------NVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVS 222 (265)
T ss_pred eEEEeeh---------hhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHH
Confidence 9988654 24444567789999999999999999875421 1 00 0111234556
Q ss_pred HHHHhCCCCceEEEEEe
Q 041272 235 AFARSLSVDDWICCKFQ 251 (267)
Q Consensus 235 ~~~~~l~~~~~~~~~~~ 251 (267)
.+.+-+...+|++.++.
T Consensus 223 ~l~~v~~p~GF~v~~~t 239 (265)
T PF05219_consen 223 SLVNVFEPAGFEVERWT 239 (265)
T ss_pred HHHHHHHhcCCEEEEEe
Confidence 66677788899887643
No 210
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.68 E-value=7.3e-07 Score=84.11 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=78.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCC----CCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh-hhhhc-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADES----SAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS-RMEEI- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~----p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~- 167 (267)
...+|||.+||+|.+...++.++.... -...++|+|+++.++..|+.++...+ ...+.+...+.. +....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~----~~~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA----LLEINVINFNSLSYVLLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC----CCCceeeeccccccccccc
Confidence 345999999999999999988763100 02578999999999999999987654 112233322211 10000
Q ss_pred CCCCCcEEEEEEeCCCCCCCC-C-cee-----------------------------------echhhHHHHH-HHHHhcc
Q 041272 168 VPKSTAVRLVAFNLGYLPGGD-K-SVI-----------------------------------TTSETTKMAL-EAAERIL 209 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d-~-~~~-----------------------------------~~~~~~~~~l-~~~~~~L 209 (267)
......||+|+.|+||..... . ... -.......++ +.+.++|
T Consensus 107 ~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL 186 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIA 186 (524)
T ss_pred ccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhc
Confidence 111237999999999964321 0 000 0011222344 6688999
Q ss_pred cCCcEEEEEEecCC
Q 041272 210 IPGGLISMVVYVGH 223 (267)
Q Consensus 210 kpgG~l~i~~~~~~ 223 (267)
++||++.++.+.+.
T Consensus 187 ~~~G~~~~I~P~s~ 200 (524)
T TIGR02987 187 NKNGYVSIISPASW 200 (524)
T ss_pred CCCCEEEEEEChHH
Confidence 99999999887543
No 211
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.65 E-value=1.6e-07 Score=78.97 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=69.2
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
....+.+..+++.+.|||+|.|||.+|..|.+. +++|+++|+++.|+..-+++.+... .....+++.+|.
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~------~kkVvA~E~Dprmvael~krv~gtp---~~~kLqV~~gD~- 116 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA------GKKVVAVEIDPRMVAELEKRVQGTP---KSGKLQVLHGDF- 116 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh------cCeEEEEecCcHHHHHHHHHhcCCC---ccceeeEEeccc-
Confidence 344455667899999999999999999999998 6899999999999999999887754 246778887654
Q ss_pred hhhhcCCCCCcEEEEEEeCCC
Q 041272 163 RMEEIVPKSTAVRLVAFNLGY 183 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~ 183 (267)
.+... -.||.+|+|++|
T Consensus 117 --lK~d~--P~fd~cVsNlPy 133 (315)
T KOG0820|consen 117 --LKTDL--PRFDGCVSNLPY 133 (315)
T ss_pred --ccCCC--cccceeeccCCc
Confidence 22221 258999999887
No 212
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.64 E-value=9.2e-07 Score=77.75 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=80.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEE--EecChhhhhhcC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL--FNMCHSRMEEIV 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~ 168 (267)
.+.++..++|+|||+|.-+..|.+.+.......++++||+|.++++.+.+++.... .+.+++ +.++..+....+
T Consensus 73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~----~p~l~v~~l~gdy~~~l~~l 148 (319)
T TIGR03439 73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN----FSHVRCAGLLGTYDDGLAWL 148 (319)
T ss_pred hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc----CCCeEEEEEEecHHHHHhhc
Confidence 46678899999999999998888766321113679999999999999999998322 355555 676666654433
Q ss_pred CC---CCcEEEEEEeCCCCCCCCCceee-chhhHHHHHHHHHh-cccCCcEEEEEE
Q 041272 169 PK---STAVRLVAFNLGYLPGGDKSVIT-TSETTKMALEAAER-ILIPGGLISMVV 219 (267)
Q Consensus 169 ~~---~~~~d~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~-~LkpgG~l~i~~ 219 (267)
+. ..... +++.+|. ++-+ .++....+|+++.+ .|+|||.|++-.
T Consensus 149 ~~~~~~~~~r-~~~flGS------siGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 149 KRPENRSRPT-TILWLGS------SIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccccccCCcc-EEEEeCc------cccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 22 11122 2333322 1111 35667799999999 999999998743
No 213
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.64 E-value=2.3e-06 Score=69.46 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=79.2
Q ss_pred cCCCC-EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 92 VRKGD-TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 92 l~~~~-~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
+.... +++|+|+|.|.-++.+|-.. |..+++.+|.+..-+..-+.-....+ ..|+++++...++ ...
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~----p~~~~~LvEs~~KK~~FL~~~~~~L~----L~nv~v~~~R~E~----~~~ 112 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIAR----PDLQVTLVESVGKKVAFLKEVVRELG----LSNVEVINGRAEE----PEY 112 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-----TTSEEEEEESSHHHHHHHHHHHHHHT-----SSEEEEES-HHH----TTT
T ss_pred hccCCceEEecCCCCCChhHHHHHhC----CCCcEEEEeCCchHHHHHHHHHHHhC----CCCEEEEEeeecc----ccc
Confidence 44444 89999999999999999885 45899999999999999999888888 5789999877766 222
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...||++++-. ......+++-+..+|++||.+++.-
T Consensus 113 ~~~fd~v~aRA-------------v~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 113 RESFDVVTARA-------------VAPLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp TT-EEEEEEES-------------SSSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCCccEEEeeh-------------hcCHHHHHHHHHHhcCCCCEEEEEc
Confidence 45799999873 1223478888899999999986643
No 214
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.62 E-value=1.4e-06 Score=77.42 Aligned_cols=136 Identities=20% Similarity=0.196 Sum_probs=98.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
..++|.+|||+.+-+|.-|.++|..++. .+.|++.|.+...++..+.|+.+.| ..+..+...|...+......
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn---~G~I~AnD~n~~r~~~l~~n~~rlG----v~ntiv~n~D~~ef~~~~~~ 310 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKN---TGVIFANDSNENRLKSLKANLHRLG----VTNTIVSNYDGREFPEKEFP 310 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcC---CceEEecccchHHHHHHHHHHHHhC----CCceEEEccCcccccccccC
Confidence 4578999999999999999999998876 6899999999999999999999988 56666666555433322222
Q ss_pred CCcEEEEEEeCCC----CCCCCCceee---------chhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 171 STAVRLVAFNLGY----LPGGDKSVIT---------TSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 171 ~~~~d~ii~~~~~----lp~~d~~~~~---------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
. +||-|+.+.+. +...+..+-. ...-.++.|..+.+++++||+|+.+++.- ..+|.+.+..|+
T Consensus 311 ~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI---~~~ENE~vV~ya 386 (460)
T KOG1122|consen 311 G-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI---TVEENEAVVDYA 386 (460)
T ss_pred c-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec---chhhhHHHHHHH
Confidence 2 79999999755 2222223322 12345789999999999999998887643 334455554443
No 215
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.5e-07 Score=71.89 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=59.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.|++++|+|||.|-++...+.. + ...|+|+|+++++++.+++|+.+.. -++++++.+. .+.....+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~-~----~e~vlGfDIdpeALEIf~rNaeEfE-----vqidlLqcdi---ldle~~~g~ 114 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMP-K----NESVLGFDIDPEALEIFTRNAEEFE-----VQIDLLQCDI---LDLELKGGI 114 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcC-C----CceEEeeecCHHHHHHHhhchHHhh-----hhhheeeeec---cchhccCCe
Confidence 6889999999999999555532 2 4689999999999999999998854 4567776443 444445578
Q ss_pred EEEEEEeCCC
Q 041272 174 VRLVAFNLGY 183 (267)
Q Consensus 174 ~d~ii~~~~~ 183 (267)
||.++.|+++
T Consensus 115 fDtaviNppF 124 (185)
T KOG3420|consen 115 FDTAVINPPF 124 (185)
T ss_pred EeeEEecCCC
Confidence 9999999754
No 216
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=2.7e-07 Score=78.27 Aligned_cols=79 Identities=20% Similarity=0.136 Sum_probs=63.5
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+.+++.|||||+|.|.+|..|+++ +.+|++||+++.+++..++.... ..|++++++|.-.. ..
T Consensus 26 a~~~~~d~VlEIGpG~GaLT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~---d~ 90 (259)
T COG0030 26 ANISPGDNVLEIGPGLGALTEPLLER------AARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKF---DF 90 (259)
T ss_pred cCCCCCCeEEEECCCCCHHHHHHHhh------cCeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcC---cc
Confidence 34667899999999999999999998 47899999999999999998763 46899998766422 11
Q ss_pred CCC-cEEEEEEeCCC
Q 041272 170 KST-AVRLVAFNLGY 183 (267)
Q Consensus 170 ~~~-~~d~ii~~~~~ 183 (267)
+.. .++.+++|++|
T Consensus 91 ~~l~~~~~vVaNlPY 105 (259)
T COG0030 91 PSLAQPYKVVANLPY 105 (259)
T ss_pred hhhcCCCEEEEcCCC
Confidence 111 47899999888
No 217
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.59 E-value=7e-07 Score=72.37 Aligned_cols=113 Identities=22% Similarity=0.256 Sum_probs=65.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh------hhhhhc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH------SRMEEI 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~------~~l~~~ 167 (267)
++.+|||+||++|.++..++++.+. ..+|+|+|+.+.. . ..++..+++|. ..+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~---~~~v~avDl~~~~------~---------~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGP---AGRVVAVDLGPMD------P---------LQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTT---EEEEEEEESSSTG------S----------TTEEBTTGGGEEEEHSHHGGGS
T ss_pred cccEEEEcCCcccceeeeeeecccc---cceEEEEeccccc------c---------ccceeeeecccchhhHHHhhhhh
Confidence 3489999999999999999998633 5899999999861 0 12233332221 223332
Q ss_pred CC-CCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 168 VP-KSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 168 ~~-~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
.. ....+|+|++|...--..+....+ ........+.-+.+.|+|||.+++-.+.+..
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~ 144 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE 144 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc
Confidence 22 124799999996331111111111 1223345566677889999999888875433
No 218
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.56 E-value=4.5e-07 Score=74.34 Aligned_cols=111 Identities=18% Similarity=0.238 Sum_probs=64.7
Q ss_pred CCEEEEecCCCCh----HHHHHHHhcCCCCC-CcEEEEEeCChHHHHHHHHHHhhcc----c------------------
Q 041272 95 GDTVVDATCGNGY----DTLMMLKMVADESS-AGCVYGLDIQSEALKSTSSLLDKTT----S------------------ 147 (267)
Q Consensus 95 ~~~VLDlGcG~G~----~~~~la~~~~~~~p-~~~v~giD~s~~~i~~a~~~~~~~~----~------------------ 147 (267)
.-+|+-+||+||. +++.+.+..+...+ ..+|+|.|+|+.+++.|++-.=... .
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 3599999999994 34444442221011 3699999999999999986431100 0
Q ss_pred --cccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEE
Q 041272 148 --KAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 148 --~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
+.+..+|.|...+. .+..+....||+|++- .++. ..+...++++.+++.|+|||+|++
T Consensus 112 v~~~lr~~V~F~~~NL---~~~~~~~~~fD~I~CR---------NVlIYF~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNL---LDPDPPFGRFDLIFCR---------NVLIYFDPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp E-HHHHTTEEEEE--T---T-S------EEEEEE----------SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EChHHcCceEEEeccc---CCCCcccCCccEEEec---------CEEEEeCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 12234566665333 3322334579999887 2332 567778999999999999999977
No 219
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.54 E-value=6.8e-07 Score=73.49 Aligned_cols=139 Identities=18% Similarity=0.162 Sum_probs=86.6
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
..++||+|+|.|+.|..+...+ ..+|..||..+..++.|++.+.... ....++++. .+.++.++...|
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~-----f~~VDlVEp~~~Fl~~a~~~l~~~~----~~v~~~~~~---gLQ~f~P~~~~Y 123 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV-----FDEVDLVEPVEKFLEQAKEYLGKDN----PRVGEFYCV---GLQDFTPEEGKY 123 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC------SEEEEEES-HHHHHHHHHHTCCGG----CCEEEEEES----GGG----TT-E
T ss_pred cceEEecccccchhHHHHHHHh-----cCEeEEeccCHHHHHHHHHHhcccC----CCcceEEec---CHhhccCCCCcE
Confidence 4699999999999998765432 3689999999999999998776522 223445543 334445555689
Q ss_pred EEEEEeCCCCCCCCCceee-chhhHHHHHHHHHhcccCCcEEEEEEecCCCCC--h--hh---HHHHHHHHHhCCCCceE
Q 041272 175 RLVAFNLGYLPGGDKSVIT-TSETTKMALEAAERILIPGGLISMVVYVGHPGG--R--EE---LEAVEAFARSLSVDDWI 246 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~--~~---~~~~~~~~~~l~~~~~~ 246 (267)
|+|..... +.| .-.+.-++|+++...|+|+|++++-......+. . ++ .+....|.+.+.+.+++
T Consensus 124 DlIW~QW~--------lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~ 195 (218)
T PF05891_consen 124 DLIWIQWC--------LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLR 195 (218)
T ss_dssp EEEEEES---------GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-E
T ss_pred eEEEehHh--------hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCE
Confidence 99998841 112 234567999999999999999999766443221 0 00 11234455555567888
Q ss_pred EEEEeee
Q 041272 247 CCKFQML 253 (267)
Q Consensus 247 ~~~~~~~ 253 (267)
++..+..
T Consensus 196 ~v~~~~Q 202 (218)
T PF05891_consen 196 LVKEEKQ 202 (218)
T ss_dssp EEEEEE-
T ss_pred EEEeccc
Confidence 8886664
No 220
>PRK00536 speE spermidine synthase; Provisional
Probab=98.52 E-value=6.6e-07 Score=76.40 Aligned_cols=101 Identities=11% Similarity=0.031 Sum_probs=76.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+...+||=||-|-|..+.++.++ | .+|+.||+++++++.+++.+.........+|++++.. +.+. ...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-----~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~--~~~ 138 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-----D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDL--DIK 138 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-----C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhc--cCC
Confidence 34579999999999999999987 2 4999999999999999997765432233577777642 1111 124
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.||+||.+.. ....+.+.+.+.|+|||+++...
T Consensus 139 ~fDVIIvDs~--------------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 139 KYDLIICLQE--------------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred cCCEEEEcCC--------------CChHHHHHHHHhcCCCcEEEECC
Confidence 7999999931 11578899999999999997643
No 221
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.46 E-value=1.7e-05 Score=67.82 Aligned_cols=117 Identities=16% Similarity=0.224 Sum_probs=84.6
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
.-+||||.||.|+..+.+....+.. ...|.-.|.|+..|+..++.+++.| +..-++|.++|+.+...+..-+...
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~~g---L~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPER--PDSILLRDYSPINVEKGRALIAERG---LEDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHHcC---CccceEEEecCCCCHhHhhccCCCC
Confidence 3499999999999998888775430 2589999999999999999999988 3444599998887765543223234
Q ss_pred EEEEEe-C-CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 175 RLVAFN-L-GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 175 d~ii~~-~-~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
++++.. + .++++. .-....++.+.+.+.|||.++.+.-+-|+
T Consensus 211 ~l~iVsGL~ElF~Dn--------~lv~~sl~gl~~al~pgG~lIyTgQPwHP 254 (311)
T PF12147_consen 211 TLAIVSGLYELFPDN--------DLVRRSLAGLARALEPGGYLIYTGQPWHP 254 (311)
T ss_pred CEEEEecchhhCCcH--------HHHHHHHHHHHHHhCCCcEEEEcCCCCCc
Confidence 555443 2 222221 22356788999999999999888755565
No 222
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.42 E-value=2.3e-06 Score=70.67 Aligned_cols=119 Identities=17% Similarity=0.098 Sum_probs=65.9
Q ss_pred HhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc-----cccccceEEE
Q 041272 83 AANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS-----KAEKGLVKLF 157 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~-----~~~~~~v~~~ 157 (267)
+...+....+.+++..+|||||.|.....+|...+- .+.+|||+.+...+.|+...+.... .....++++.
T Consensus 31 ~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~----~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~ 106 (205)
T PF08123_consen 31 VSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGC----KKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELI 106 (205)
T ss_dssp HHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEE
T ss_pred HHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCC----cEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceee
Confidence 333344445788999999999999999998877643 5799999999999888765543210 0113567777
Q ss_pred ecChhhhh--hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 158 NMCHSRME--EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 158 ~~~~~~l~--~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
++|..+.. .... .+.|+|+.|- .... +.....|.+....||+|-+++-
T Consensus 107 ~gdfl~~~~~~~~~--s~AdvVf~Nn---------~~F~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 107 HGDFLDPDFVKDIW--SDADVVFVNN---------TCFD-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp CS-TTTHHHHHHHG--HC-SEEEE-----------TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccCccccHhHhhhh--cCCCEEEEec---------cccC-HHHHHHHHHHHhcCCCCCEEEE
Confidence 76654321 1111 1357777772 2222 2334555777778899888753
No 223
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=6.6e-06 Score=65.68 Aligned_cols=115 Identities=21% Similarity=0.207 Sum_probs=77.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-Chh------h
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-CHS------R 163 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~~~------~ 163 (267)
.++|+++|||+||.+|.++....++.++ ++.|.|||+-+-.- ..-+.++++ |.. .
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p---~g~v~gVDllh~~p---------------~~Ga~~i~~~dvtdp~~~~k 127 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNP---NGMVLGVDLLHIEP---------------PEGATIIQGNDVTDPETYRK 127 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCC---CceEEEEeeeeccC---------------CCCcccccccccCCHHHHHH
Confidence 3678999999999999999999999864 79999999854211 112233332 111 1
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeec--hhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITT--SETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
+.+.+ ++..+|+|++++..-+.+.+..+|. .+--..++.-+...++|+|.++.-.|.+..
T Consensus 128 i~e~l-p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 128 IFEAL-PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred HHHhC-CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 22223 3568999999986655554443332 233345666677889999999998886544
No 224
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.39 E-value=1.4e-06 Score=72.90 Aligned_cols=110 Identities=21% Similarity=0.288 Sum_probs=72.3
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
+....|-|+|||-+.++. .. .-+|+.+|+.+. ..+| +. -|+...+.++.
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~------~~kV~SfDL~a~-----------------~~~V--~~---cDm~~vPl~d~ 227 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE------RHKVHSFDLVAV-----------------NERV--IA---CDMRNVPLEDE 227 (325)
T ss_pred cCceEEEecccchhhhhh---cc------ccceeeeeeecC-----------------CCce--ee---ccccCCcCccC
Confidence 345689999999998776 11 257999997431 1222 22 24455556677
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
++|++++++.. +.++...+++++.|+||+||.++|...... ...+..|...+..-+|.+..
T Consensus 228 svDvaV~CLSL----------Mgtn~~df~kEa~RiLk~gG~l~IAEv~SR------f~dv~~f~r~l~~lGF~~~~ 288 (325)
T KOG3045|consen 228 SVDVAVFCLSL----------MGTNLADFIKEANRILKPGGLLYIAEVKSR------FSDVKGFVRALTKLGFDVKH 288 (325)
T ss_pred cccEEEeeHhh----------hcccHHHHHHHHHHHhccCceEEEEehhhh------cccHHHHHHHHHHcCCeeee
Confidence 99999998533 335567899999999999999999876321 12233355555555555443
No 225
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.38 E-value=7.8e-05 Score=65.57 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=62.4
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.+|+++|||||++|.+|..++++ +.+|++||..+ | ...+.. .++|.....+.... .+..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r------G~~V~AVD~g~-l----~~~L~~------~~~V~h~~~d~fr~---~p~~ 268 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR------GMFVTAVDNGP-M----AQSLMD------TGQVEHLRADGFKF---RPPR 268 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc------CCEEEEEechh-c----CHhhhC------CCCEEEEeccCccc---CCCC
Confidence 468999999999999999999998 57999999654 2 122222 46788776554332 2224
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC--cEEEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG--GLISMVV 219 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~i~~ 219 (267)
..+|.+++|+. ..+..+.+-+.+.|..| ...+++.
T Consensus 269 ~~vDwvVcDmv-------------e~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 269 KNVDWLVCDMV-------------EKPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred CCCCEEEEecc-------------cCHHHHHHHHHHHHhcCcccEEEEEE
Confidence 57999999942 22234555555566555 3444443
No 226
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.38 E-value=1.6e-06 Score=75.14 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=69.1
Q ss_pred CEEEEecCCCCh----HHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc----cc--------------------
Q 041272 96 DTVVDATCGNGY----DTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT----TS-------------------- 147 (267)
Q Consensus 96 ~~VLDlGcG~G~----~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~----~~-------------------- 147 (267)
-+|+..||+||. ++..+.+..+......+|+|+|+|+.+++.|++-.-.. +.
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 599999999994 34444443321001368999999999999998863110 00
Q ss_pred ---cccccceEEEecChhhhhhc-CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 148 ---KAEKGLVKLFNMCHSRMEEI-VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 148 ---~~~~~~v~~~~~~~~~l~~~-~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
+.+...|.|... |+.+. .+....||+|++.-.. +....+...++++++.+.|+|||+|++
T Consensus 197 ~v~~~lr~~V~F~~~---NL~~~~~~~~~~fD~I~cRNvl-------iyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 197 RVRQELANYVDFQQL---NLLAKQWAVPGPFDAIFCRNVM-------IYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred EEChHHHccCEEEcc---cCCCCCCccCCCcceeeHhhHH-------hcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 011234455442 33331 1223478998885211 112356778999999999999998865
No 227
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.36 E-value=3.2e-05 Score=63.87 Aligned_cols=133 Identities=14% Similarity=0.089 Sum_probs=85.5
Q ss_pred EEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEEE
Q 041272 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRLV 177 (267)
Q Consensus 98 VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~i 177 (267)
|.||||--|++...|++... ..+++++|+++..++.|+++++..+ +..+++++.+|.. +.+.+....|.|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~----~~~~ia~DI~~gpL~~A~~~i~~~~---l~~~i~~rlgdGL---~~l~~~e~~d~i 70 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK----APKAIAVDINPGPLEKAKENIAKYG---LEDRIEVRLGDGL---EVLKPGEDVDTI 70 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS----EEEEEEEESSHHHHHHHHHHHHHTT----TTTEEEEE-SGG---GG--GGG---EE
T ss_pred CceeccchhHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHHcC---CcccEEEEECCcc---cccCCCCCCCEE
Confidence 68999999999999999743 3589999999999999999999988 5788999886642 223232235555
Q ss_pred E-EeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEeeecCC
Q 041272 178 A-FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQMLNRP 256 (267)
Q Consensus 178 i-~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (267)
+ +.+| .....+++++....++....|++ .+. .....+.+|+... +|.+..-..+..+
T Consensus 71 vIAGMG------------G~lI~~ILe~~~~~~~~~~~lIL-qP~------~~~~~LR~~L~~~---gf~I~~E~lv~e~ 128 (205)
T PF04816_consen 71 VIAGMG------------GELIIEILEAGPEKLSSAKRLIL-QPN------THAYELRRWLYEN---GFEIIDEDLVEEN 128 (205)
T ss_dssp EEEEE-------------HHHHHHHHHHTGGGGTT--EEEE-EES------S-HHHHHHHHHHT---TEEEEEEEEEEET
T ss_pred EEecCC------------HHHHHHHHHhhHHHhccCCeEEE-eCC------CChHHHHHHHHHC---CCEEEEeEEEeEC
Confidence 4 4432 23446778877777766556654 332 2346777888764 5777766665544
Q ss_pred CCceEE
Q 041272 257 LAPVLV 262 (267)
Q Consensus 257 ~~p~~~ 262 (267)
...+.+
T Consensus 129 ~~~YeI 134 (205)
T PF04816_consen 129 GRFYEI 134 (205)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 444333
No 228
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.35 E-value=3e-06 Score=67.96 Aligned_cols=127 Identities=19% Similarity=0.149 Sum_probs=76.7
Q ss_pred HHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHH----HHHHHHHhhccccccccceEEEecChh
Q 041272 87 VWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEAL----KSTSSLLDKTTSKAEKGLVKLFNMCHS 162 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i----~~a~~~~~~~~~~~~~~~v~~~~~~~~ 162 (267)
+....+++|++|+|+-.|.|++|..++..+++ .+.|+++-..+... +..+.+..... ....|++.+....
T Consensus 41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp---~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e--~~~aN~e~~~~~~- 114 (238)
T COG4798 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGP---KGKVYAYVPAELTKFAKREGPRLNAAARE--PVYANVEVIGKPL- 114 (238)
T ss_pred eEEeccCCCCEEEEEecCCccHhhhhchhcCC---ceeEEEecchhhcccccchhhhhhhhhhh--hhhhhhhhhCCcc-
Confidence 33446899999999999999999999999986 67999885444311 11111110000 0133444432221
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
..+. .....|++..+..|+.-..+. .++....++...+++.|||||++++.+....+
T Consensus 115 --~A~~-~pq~~d~~~~~~~yhdmh~k~--i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p 171 (238)
T COG4798 115 --VALG-APQKLDLVPTAQNYHDMHNKN--IHPATAAKVNAAVFKALKPGGVYLVEDHRADP 171 (238)
T ss_pred --cccC-CCCcccccccchhhhhhhccc--cCcchHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence 2222 223566666553331111111 13556678999999999999999998876555
No 229
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=1.3e-05 Score=66.31 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=77.0
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc-
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA- 173 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~- 173 (267)
+.+++|||+|.|--++.+|-.. |+.+|+-+|....-+..-++-..+.+ ..|++++++..+++.... .
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~----p~~~vtLles~~Kk~~FL~~~~~eL~----L~nv~i~~~RaE~~~~~~----~~ 135 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF----PDLKVTLLESLGKKIAFLREVKKELG----LENVEIVHGRAEEFGQEK----KQ 135 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc----cCCcEEEEccCchHHHHHHHHHHHhC----CCCeEEehhhHhhccccc----cc
Confidence 5899999999999999999654 46889999999999999988888877 688999987766654322 2
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
||+|.+-. ......+.+-+..++|+||.++..
T Consensus 136 ~D~vtsRA-------------va~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 136 YDVVTSRA-------------VASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred CcEEEeeh-------------ccchHHHHHHHHHhcccCCcchhh
Confidence 89988762 122245667778899999987543
No 230
>PRK04148 hypothetical protein; Provisional
Probab=98.33 E-value=6.9e-06 Score=62.80 Aligned_cols=94 Identities=11% Similarity=-0.011 Sum_probs=59.0
Q ss_pred CCCEEEEecCCCCh-HHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGNGY-DTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~-~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.+.+|||+|||+|. .+..|++. +.+|+++|+++.+++.|+++. +.++.+|..+-...+ ..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~~~-----------~~~v~dDlf~p~~~~--y~ 76 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES------GFDVIVIDINEKAVEKAKKLG-----------LNAFVDDLFNPNLEI--YK 76 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhC-----------CeEEECcCCCCCHHH--Hh
Confidence 45799999999996 88888865 479999999999999887742 344544432211111 12
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+|+|.+--+ +++....+-++.+ +-|.-++|...
T Consensus 77 ~a~liysirp------------p~el~~~~~~la~--~~~~~~~i~~l 110 (134)
T PRK04148 77 NAKLIYSIRP------------PRDLQPFILELAK--KINVPLIIKPL 110 (134)
T ss_pred cCCEEEEeCC------------CHHHHHHHHHHHH--HcCCCEEEEcC
Confidence 5778777621 2333344444544 34455666554
No 231
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.26 E-value=3.6e-05 Score=66.16 Aligned_cols=94 Identities=21% Similarity=0.172 Sum_probs=70.0
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCC
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
.+.++..|||+|+|+|.+|..|++. +.+|+++|+++.+++..+++... ..+++++.+|.-++.....-
T Consensus 27 ~~~~~~~VlEiGpG~G~lT~~L~~~------~~~v~~vE~d~~~~~~L~~~~~~------~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 27 DLSEGDTVLEIGPGPGALTRELLKR------GKRVIAVEIDPDLAKHLKERFAS------NPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp TCGTTSEEEEESSTTSCCHHHHHHH------SSEEEEEESSHHHHHHHHHHCTT------CSSEEEEES-TTTSCGGGHC
T ss_pred CCCCCCEEEEeCCCCccchhhHhcc------cCcceeecCcHhHHHHHHHHhhh------cccceeeecchhccccHHhh
Confidence 4558899999999999999999998 36999999999999999987763 46899998877655443211
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhc
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERI 208 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~ 208 (267)
......+++|++| .....++.++...
T Consensus 95 ~~~~~~vv~NlPy------------~is~~il~~ll~~ 120 (262)
T PF00398_consen 95 KNQPLLVVGNLPY------------NISSPILRKLLEL 120 (262)
T ss_dssp SSSEEEEEEEETG------------TGHHHHHHHHHHH
T ss_pred cCCceEEEEEecc------------cchHHHHHHHhhc
Confidence 2356789999765 1124566666663
No 232
>PRK10742 putative methyltransferase; Provisional
Probab=98.23 E-value=9.2e-06 Score=68.39 Aligned_cols=86 Identities=15% Similarity=0.126 Sum_probs=68.0
Q ss_pred hcCCCC--EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc----c-cccceEEEecChhh
Q 041272 91 VVRKGD--TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK----A-EKGLVKLFNMCHSR 163 (267)
Q Consensus 91 ~l~~~~--~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~----~-~~~~v~~~~~~~~~ 163 (267)
.+++|. +|||+.+|+|..+..++.+ +++|+++|.++.+....+++++....+ . +..++++++++..+
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 467777 9999999999999999988 578999999999999999998874110 0 12578888888776
Q ss_pred hhhcCCCCCcEEEEEEeCCCC
Q 041272 164 MEEIVPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~l 184 (267)
+.....+ .||+|++|++|-
T Consensus 157 ~L~~~~~--~fDVVYlDPMfp 175 (250)
T PRK10742 157 ALTDITP--RPQVVYLDPMFP 175 (250)
T ss_pred HHhhCCC--CCcEEEECCCCC
Confidence 6554332 699999998773
No 233
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.20 E-value=2e-05 Score=64.34 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=82.7
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
-.+|.+||++|-|-|.....+-++-+ .+=+-||..++.++..+...-. ...||..+.+..+|....++.+
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p-----~~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g~WeDvl~~L~d~ 168 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPP-----DEHWIIEAHPDVLKRMRDWGWR-----EKENVIILEGRWEDVLNTLPDK 168 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCC-----cceEEEecCHHHHHHHHhcccc-----cccceEEEecchHhhhcccccc
Confidence 36789999999999998887776532 3456799999999888876644 2478888888777776666544
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
.||-|..+ ......++...+.+.+.++|||+|++-+
T Consensus 169 -~FDGI~yD---------Ty~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 169 -HFDGIYYD---------TYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred -CcceeEee---------chhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 59999998 3334567888999999999999999843
No 234
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.19 E-value=2.6e-06 Score=69.68 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=65.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC-C
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS-T 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~-~ 172 (267)
....|+|..||.|..+...|.+ +..|++||++|.-|..|+.|++-.| ...+|+|+++|..++...+..+ .
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~------~~~VisIdiDPikIa~AkhNaeiYG---I~~rItFI~GD~ld~~~~lq~~K~ 164 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ------GPYVIAIDIDPVKIACARHNAEVYG---VPDRITFICGDFLDLASKLKADKI 164 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh------CCeEEEEeccHHHHHHHhccceeec---CCceeEEEechHHHHHHHHhhhhh
Confidence 4568999999999999999987 3689999999999999999999999 6779999999998887754322 2
Q ss_pred cEEEEEEeCC
Q 041272 173 AVRLVAFNLG 182 (267)
Q Consensus 173 ~~d~ii~~~~ 182 (267)
.+|.+...++
T Consensus 165 ~~~~vf~spp 174 (263)
T KOG2730|consen 165 KYDCVFLSPP 174 (263)
T ss_pred eeeeeecCCC
Confidence 3556655543
No 235
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.19 E-value=5.1e-05 Score=66.63 Aligned_cols=118 Identities=17% Similarity=0.145 Sum_probs=85.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHH--Hhhccc-cccccceEEEecChhhhhhcC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSL--LDKTTS-KAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~--~~~~~~-~~~~~~v~~~~~~~~~l~~~~ 168 (267)
++...+||-+|-|.|-...++.+.-+ -.+++-+|.+|.|++.++++ +++.+. .....+++++.+|+.++...-
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~----~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a 362 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQ----VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA 362 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCC----cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh
Confidence 34556999999999999999987622 36999999999999999954 333222 234678999998888776654
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+ .||++|.|+ |+++....- .--..++..-+.+.|+++|++++..
T Consensus 363 ~~--~fD~vIVDl---~DP~tps~~-rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 363 AD--MFDVVIVDL---PDPSTPSIG-RLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred cc--cccEEEEeC---CCCCCcchh-hhhhHHHHHHHHHhcCcCceEEEec
Confidence 33 799999995 333221111 1112577888899999999998754
No 236
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.18 E-value=5.3e-06 Score=64.33 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=47.2
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC 160 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~ 160 (267)
+|||+|||.|.++..+++..+ ..+|+++|.++.+.+.++++++.++ ..++.+++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~----~~~v~~~E~~~~~~~~l~~~~~~n~----~~~v~~~~~a 56 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA----EGRVIAFEPLPDAYEILEENVKLNN----LPNVVLLNAA 56 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC----CCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEEee
Confidence 489999999999999998743 4699999999999999999998876 3567776543
No 237
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.17 E-value=1.1e-05 Score=65.03 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=74.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.|.+|||+|+|+|..++..++.. ...|+..|+.+..+...+-|++.|+ ..+.++..+ + ..++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-----A~~v~a~d~~P~~~~ai~lNa~ang-----v~i~~~~~d---~---~g~~~~ 142 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-----AAEVVAADIDPWLEQAIRLNAAANG-----VSILFTHAD---L---IGSPPA 142 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-----hHHHHhcCCChHHHHHhhcchhhcc-----ceeEEeecc---c---cCCCcc
Confidence 68899999999999998888762 4789999999999999999999887 456665422 2 223457
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+|+++.. .+....+...+.+. +.+.|+..|..+++.-++
T Consensus 143 ~Dl~Lag---------Dlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 143 FDLLLAG---------DLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred eeEEEee---------ceecCchHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence 9988766 34444555567777 666677667666554433
No 238
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.17 E-value=5.3e-06 Score=74.12 Aligned_cols=112 Identities=18% Similarity=0.216 Sum_probs=84.9
Q ss_pred hhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 89 KHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
...+.++..++|+|||.|.....++..- ..+++|+|.++..+..+.......+ +..+..++ ..++...+
T Consensus 105 ~~~~~~~~~~~~~~~g~~~~~~~i~~f~-----~~~~~Gl~~n~~e~~~~~~~~~~~~---l~~k~~~~---~~~~~~~~ 173 (364)
T KOG1269|consen 105 RESCFPGSKVLDVGTGVGGPSRYIAVFK-----KAGVVGLDNNAYEAFRANELAKKAY---LDNKCNFV---VADFGKMP 173 (364)
T ss_pred hhcCcccccccccCcCcCchhHHHHHhc-----cCCccCCCcCHHHHHHHHHHHHHHH---hhhhccee---hhhhhcCC
Confidence 3456788899999999999999999863 4789999999999988888776655 22222332 34555555
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.++..||.+.+. ....+.++...+++++++++||||.+....+
T Consensus 174 fedn~fd~v~~l---------d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 174 FEDNTFDGVRFL---------EVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred CCccccCcEEEE---------eecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 666788888766 3445567778999999999999999976544
No 239
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.16 E-value=3.9e-05 Score=65.95 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=66.1
Q ss_pred CEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHh-hccccccccceEEEecChhhhhhcCCCCCc
Q 041272 96 DTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD-KTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 96 ~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~-~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+|+=||||+ -..++.+++..+. +..|+++|+++++++.+++-.+ ..+ +..+++|+.++..+....+ ..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~---~~~v~~iD~d~~A~~~a~~lv~~~~~---L~~~m~f~~~d~~~~~~dl---~~ 192 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGP---GARVHNIDIDPEANELARRLVASDLG---LSKRMSFITADVLDVTYDL---KE 192 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT-----EEEEEESSHHHHHHHHHHHH---H---H-SSEEEEES-GGGG-GG------
T ss_pred ceEEEEcCCCcchHHHHHHHHhCC---CCeEEEEeCCHHHHHHHHHHHhhccc---ccCCeEEEecchhcccccc---cc
Confidence 4999999998 5555777766543 5789999999999999998877 334 4678999988776654322 25
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
||+|+...- +-...+.+.++++++.+.++||..+++-..
T Consensus 193 ~DvV~lAal--------Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 193 YDVVFLAAL--------VGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -SEEEE-TT---------S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred CCEEEEhhh--------cccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 888887731 111234678999999999999999877643
No 240
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.13 E-value=1.3e-05 Score=62.39 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=44.9
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcc
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~ 146 (267)
.+..+|+|+|||.|+++..++..++...++.+|+|||.++..++.|+++.++.+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 467799999999999999999944221136899999999999999999988754
No 241
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.12 E-value=1.8e-05 Score=68.57 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=51.6
Q ss_pred CCEEEEecCCCC-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-cccccccceEEEecC-hhhhhh-cCCC
Q 041272 95 GDTVVDATCGNG-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-TSKAEKGLVKLFNMC-HSRMEE-IVPK 170 (267)
Q Consensus 95 ~~~VLDlGcG~G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~~-~~~l~~-~~~~ 170 (267)
.-++||||||.. ...+..++.. +.+++|.|+++..++.|+++++.+ + +..+|+++... ...+.. ....
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-----~W~fvaTdID~~sl~~A~~nv~~N~~---L~~~I~l~~~~~~~~i~~~i~~~ 174 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-----GWSFVATDIDPKSLESARENVERNPN---LESRIELRKQKNPDNIFDGIIQP 174 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH-------EEEEEES-HHHHHHHHHHHHHT-T----TTTEEEEE--ST-SSTTTSTT-
T ss_pred ceEeecCCccHHHHHHHHhhhhc-----CCeEEEecCCHHHHHHHHHHHHhccc---cccceEEEEcCCccccchhhhcc
Confidence 458999999995 5566666654 489999999999999999999998 6 57788886532 223333 3334
Q ss_pred CCcEEEEEEeCCCCCC
Q 041272 171 STAVRLVAFNLGYLPG 186 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~ 186 (267)
+..||+.++|+++.-.
T Consensus 175 ~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 175 NERFDFTMCNPPFYSS 190 (299)
T ss_dssp -S-EEEEEE-----SS
T ss_pred cceeeEEecCCccccC
Confidence 4589999999877443
No 242
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.12 E-value=6.2e-05 Score=57.61 Aligned_cols=106 Identities=23% Similarity=0.301 Sum_probs=65.8
Q ss_pred EEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC-CcEEE
Q 041272 98 VVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS-TAVRL 176 (267)
Q Consensus 98 VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~-~~~d~ 176 (267)
++|+|||+|..+ .++..... ...++|+|+++.+++.++..... . ....+.+...+.... ...... ..+|+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~-~~~~~~~~~~d~ 122 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGR---GAYVVGVDLSPEMLALARARAEG-A---GLGLVDFVVADALGG-VLPFEDSASFDL 122 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCC---CceEEEEeCCHHHHHHHHhhhhh-c---CCCceEEEEeccccC-CCCCCCCCceeE
Confidence 999999999987 44444321 14899999999999986655433 2 011145554433321 011112 36888
Q ss_pred EEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 177 VAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 177 ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+.... ..+... ....+.++.+.|+|+|.+++.....
T Consensus 123 ~~~~~---------~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 123 VISLL---------VLHLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred Eeeee---------ehhcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 83331 111111 5689999999999999998877643
No 243
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.11 E-value=5.5e-05 Score=65.48 Aligned_cols=121 Identities=15% Similarity=0.123 Sum_probs=71.3
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
..+|||+|||+|..+..+.+..+. -.+++++|.|+.|++.++.-++... .............+.... ...
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~---~~~~~~vd~s~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~----~~~ 103 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPS---LKEYTCVDRSPEMLELAKRLLRAGP---NNRNAEWRRVLYRDFLPF----PPD 103 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcC---ceeeeeecCCHHHHHHHHHHHhccc---ccccchhhhhhhcccccC----CCC
Confidence 459999999999877777666553 4689999999999999998776532 011111111000011111 123
Q ss_pred EEEEEeC--CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHH
Q 041272 175 RLVAFNL--GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFA 237 (267)
Q Consensus 175 d~ii~~~--~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 237 (267)
|+|++.. ..++. ....++++++.+.+.+ .|+++.. |.+.+.+......+++
T Consensus 104 DLvi~s~~L~EL~~---------~~r~~lv~~LW~~~~~--~LVlVEp-Gt~~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 104 DLVIASYVLNELPS---------AARAELVRSLWNKTAP--VLVLVEP-GTPAGFRRIAEARDQL 156 (274)
T ss_pred cEEEEehhhhcCCc---------hHHHHHHHHHHHhccC--cEEEEcC-CChHHHHHHHHHHHHH
Confidence 8887762 22222 3446778888777766 5555444 5555555544455444
No 244
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.09 E-value=3.3e-05 Score=64.08 Aligned_cols=115 Identities=11% Similarity=0.173 Sum_probs=78.0
Q ss_pred HhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHH----HHHHHHHHhhccccccccceEEEecChhh
Q 041272 88 WKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA----LKSTSSLLDKTTSKAEKGLVKLFNMCHSR 163 (267)
Q Consensus 88 ~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~----i~~a~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (267)
....++||.+||=+|.++|+.....+..+++ .+-||+||.|+.. +..|++ -.|+--+..|+..
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGp---eG~VYAVEfs~rsGRdL~nmAkk----------RtNiiPIiEDArh 216 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGP---EGCVYAVEFSHRSGRDLINMAKK----------RTNIIPIIEDARH 216 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCC---CceEEEEEecccchHHHHHHhhc----------cCCceeeeccCCC
Confidence 3456889999999999999999999999986 7899999999864 444444 2455444434333
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCC
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGG 226 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 226 (267)
-.++-..-.-+|+|+++. + .++..+.+.-++.-.||+||-++++.-..+..+
T Consensus 217 P~KYRmlVgmVDvIFaDv---a--------qpdq~RivaLNA~~FLk~gGhfvisikancids 268 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADV---A--------QPDQARIVALNAQYFLKNGGHFVISIKANCIDS 268 (317)
T ss_pred chheeeeeeeEEEEeccC---C--------CchhhhhhhhhhhhhhccCCeEEEEEecccccc
Confidence 222211112477887773 1 233334555677889999999999876554433
No 245
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=0.00017 Score=59.99 Aligned_cols=102 Identities=21% Similarity=0.205 Sum_probs=69.5
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-ChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-CHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~~~ 171 (267)
.+|..+||+|+-||.+|..+.++ +..+|+|+|..-..+.+--++ ..++..+.. +...+.......
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~-----gAk~VyavDVG~~Ql~~kLR~---------d~rV~~~E~tN~r~l~~~~~~~ 143 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR-----GAKHVYAVDVGYGQLHWKLRN---------DPRVIVLERTNVRYLTPEDFTE 143 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc-----CCcEEEEEEccCCccCHhHhc---------CCcEEEEecCChhhCCHHHccc
Confidence 47889999999999999999987 247999999988776654332 345544332 222222211111
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..|+++++..+++- ..+|..+..+++|+|.++...-+
T Consensus 144 -~~d~~v~DvSFISL------------~~iLp~l~~l~~~~~~~v~LvKP 180 (245)
T COG1189 144 -KPDLIVIDVSFISL------------KLILPALLLLLKDGGDLVLLVKP 180 (245)
T ss_pred -CCCeEEEEeehhhH------------HHHHHHHHHhcCCCceEEEEecc
Confidence 57888888644332 47888899999999988776543
No 246
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.04 E-value=7.4e-06 Score=65.47 Aligned_cols=98 Identities=14% Similarity=0.079 Sum_probs=72.8
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
.+.+.|+|+|+|.++...|+. ..+|++|+.+|...+.|++|+.-.+ ..|++++.+|+.+.. .. ..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~------A~rViAiE~dPk~a~~a~eN~~v~g----~~n~evv~gDA~~y~---fe--~A 97 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA------AERVIAIEKDPKRARLAEENLHVPG----DVNWEVVVGDARDYD---FE--NA 97 (252)
T ss_pred hhceeeccCCcchHHHHHHhh------hceEEEEecCcHHHHHhhhcCCCCC----CcceEEEeccccccc---cc--cc
Confidence 379999999999999999987 3689999999999999999997777 789999988774432 11 35
Q ss_pred EEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEE
Q 041272 175 RLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
|++++-+ +++ ..+..-.++..+.+.||-.+.++
T Consensus 98 DvvicEm---------lDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 98 DVVICEM---------LDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ceeHHHH---------hhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 7776653 111 11222346677777888888774
No 247
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.03 E-value=4.9e-05 Score=65.17 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=69.6
Q ss_pred CCEEEEecCCCC----hHHHHHHHhcCC-CCCCcEEEEEeCChHHHHHHHHHHhh-----ccc-----------------
Q 041272 95 GDTVVDATCGNG----YDTLMMLKMVAD-ESSAGCVYGLDIQSEALKSTSSLLDK-----TTS----------------- 147 (267)
Q Consensus 95 ~~~VLDlGcG~G----~~~~~la~~~~~-~~p~~~v~giD~s~~~i~~a~~~~~~-----~~~----------------- 147 (267)
.-+|+-+||+|| .++..+.+..+. .....+|+|.|+|..+++.|++-.-. .+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 458999999999 455555565431 00147899999999999999864321 010
Q ss_pred ---cccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceee--chhhHHHHHHHHHhcccCCcEEEE
Q 041272 148 ---KAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVIT--TSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 148 ---~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
+.+...|.|.. -++....+....||+|++- .++. ..+...++++..+..|+|||+|++
T Consensus 177 ~v~~~ir~~V~F~~---~NLl~~~~~~~~fD~IfCR---------NVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 177 RVKEELRKMVRFRR---HNLLDDSPFLGKFDLIFCR---------NVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEChHHhcccEEee---cCCCCCccccCCCCEEEEc---------ceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 01112233322 1222211123368888775 2332 567788999999999999999977
No 248
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.96 E-value=1.6e-05 Score=72.64 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=63.0
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEE---eCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGL---DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~gi---D~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+||+|||+|.++..|.++ +..+..+ |..+..++.|-++ | +..-+.++ + -..++.++..
T Consensus 120 ~~LDvGcG~aSF~a~l~~r------~V~t~s~a~~d~~~~qvqfaleR----G---vpa~~~~~-~----s~rLPfp~~~ 181 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER------NVTTMSFAPNDEHEAQVQFALER----G---VPAMIGVL-G----SQRLPFPSNA 181 (506)
T ss_pred EEEeccceeehhHHHHhhC------CceEEEcccccCCchhhhhhhhc----C---cchhhhhh-c----cccccCCccc
Confidence 7999999999999999987 3444443 4444455555443 2 11111110 0 0234455668
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
||++-+.-..++.... -..+|-++-|+|+|||+++++..+..
T Consensus 182 fDmvHcsrc~i~W~~~--------~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 182 FDMVHCSRCLIPWHPN--------DGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hhhhhcccccccchhc--------ccceeehhhhhhccCceEEecCCccc
Confidence 9988766444443322 13578899999999999998877544
No 249
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.96 E-value=1.8e-05 Score=67.32 Aligned_cols=100 Identities=23% Similarity=0.307 Sum_probs=73.5
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
...+..++|+|||.|-.+ +. +|...++|.|++...+.-|++. +.... ...|....+..+
T Consensus 43 ~~~gsv~~d~gCGngky~-------~~-~p~~~~ig~D~c~~l~~~ak~~----------~~~~~---~~ad~l~~p~~~ 101 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYL-------GV-NPLCLIIGCDLCTGLLGGAKRS----------GGDNV---CRADALKLPFRE 101 (293)
T ss_pred cCCcceeeecccCCcccC-------cC-CCcceeeecchhhhhccccccC----------CCcee---ehhhhhcCCCCC
Confidence 345889999999999443 22 3567899999999998888762 11111 135666777777
Q ss_pred CcEEEEEEeCCCCCCCCCceeec---hhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITT---SETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..||.+++- .++|+ ......+++++.+.|+|||..++.++.
T Consensus 102 ~s~d~~lsi---------avihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 102 ESFDAALSI---------AVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred Cccccchhh---------hhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 789988876 34543 345688999999999999999888874
No 250
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.94 E-value=8.5e-06 Score=67.15 Aligned_cols=104 Identities=15% Similarity=0.088 Sum_probs=75.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
....++|||||-|.+...+.... -.+++-+|-|-.|++.++.. +..+ -.+....+|.+.+ ...+.+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-----vekli~~DtS~~M~~s~~~~-qdp~-----i~~~~~v~DEE~L---df~ens 137 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-----VEKLIMMDTSYDMIKSCRDA-QDPS-----IETSYFVGDEEFL---DFKENS 137 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-----hhheeeeecchHHHHHhhcc-CCCc-----eEEEEEecchhcc---cccccc
Confidence 45689999999999998887652 25899999999999998763 2221 2233344444333 344568
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+|++++.+ ..|+..+.+..+.++...|||+|.++-+.+
T Consensus 138 ~DLiisSl---------slHW~NdLPg~m~~ck~~lKPDg~Fiasml 175 (325)
T KOG2940|consen 138 VDLIISSL---------SLHWTNDLPGSMIQCKLALKPDGLFIASML 175 (325)
T ss_pred hhhhhhhh---------hhhhhccCchHHHHHHHhcCCCccchhHHh
Confidence 99999985 355666667889999999999999976655
No 251
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=0.00028 Score=62.28 Aligned_cols=137 Identities=17% Similarity=0.149 Sum_probs=87.5
Q ss_pred HHHHhhHH--HhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEE
Q 041272 80 ITIAANGV--WKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLF 157 (267)
Q Consensus 80 ~~~~~~~l--~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 157 (267)
..+.+.++ +...++||++|||++.-+|.-++.|.+.+-..-..+.|++=|+++.-+..-+..++... ..++.+.
T Consensus 139 rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~----~~~~~v~ 214 (375)
T KOG2198|consen 139 RQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP----SPNLLVT 214 (375)
T ss_pred hhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC----Ccceeee
Confidence 33344444 44567899999999999999998888865320002489999999998888888775543 2333333
Q ss_pred ecChhhhhhcC------CCCCcEEEEEEeCCCCCCCCCceee-----------------chhhHHHHHHHHHhcccCCcE
Q 041272 158 NMCHSRMEEIV------PKSTAVRLVAFNLGYLPGGDKSVIT-----------------TSETTKMALEAAERILIPGGL 214 (267)
Q Consensus 158 ~~~~~~l~~~~------~~~~~~d~ii~~~~~lp~~d~~~~~-----------------~~~~~~~~l~~~~~~LkpgG~ 214 (267)
..+........ .+...||-|+.|.+.-- +..+. .+.-...++.+..++||+||.
T Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~---Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~ 291 (375)
T KOG2198|consen 215 NHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSG---DGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGR 291 (375)
T ss_pred cccceeccccccccCchhhhhhcceeEEecccCC---CcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCE
Confidence 33322222221 12347999999854421 12221 112335788999999999999
Q ss_pred EEEEEecCC
Q 041272 215 ISMVVYVGH 223 (267)
Q Consensus 215 l~i~~~~~~ 223 (267)
++.+++...
T Consensus 292 lVYSTCSLn 300 (375)
T KOG2198|consen 292 LVYSTCSLN 300 (375)
T ss_pred EEEeccCCC
Confidence 988877443
No 252
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.91 E-value=0.00011 Score=66.36 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=77.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccccccc-ceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG-LVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~-~v~~~~~~~~~l~~~~~~~~ 172 (267)
.+-+|||.=+|+|.=++..+..++. ..+|+.-|+|+++++..++|++.|+ ... ++++.+.|+..+.. ....
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~---~~~v~~NDi~~~a~~~i~~N~~~N~---~~~~~~~v~~~DAn~ll~--~~~~ 120 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAG---VDKVTANDISPEAVELIKRNLELNG---LEDERIEVSNMDANVLLY--SRQE 120 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SS---ECEEEEEES-HHHHHHHHHHHHHCT----SGCCEEEEES-HHHHHC--HSTT
T ss_pred CCceEEeccccccHHHHHHHHHcCC---CCEEEEecCCHHHHHHHHHhHhhcc---ccCceEEEehhhHHHHhh--hccc
Confidence 4459999999999999999998643 4689999999999999999999988 344 57887777665543 1234
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|=.|+ ++ .+..+++.+.+.++.||+|.++.-
T Consensus 121 ~fD~IDlDP----fG---------Sp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 121 RFDVIDLDP----FG---------SPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp -EEEEEE------SS-----------HHHHHHHHHHEEEEEEEEEEE-
T ss_pred cCCEEEeCC----CC---------CccHhHHHHHHHhhcCCEEEEecc
Confidence 799998883 33 224799999999999999999864
No 253
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.89 E-value=0.00018 Score=61.71 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=67.8
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc---cc------------------------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT---TS------------------------ 147 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~---~~------------------------ 147 (267)
+.+||--|||-|+++..+|.+ +..+.|.|.|--|+-..+--+... +.
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~------G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~ 130 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL------GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVR 130 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc------cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceE
Confidence 469999999999999999998 579999999999976555443320 00
Q ss_pred -c--------ccccceEEEecChhhhhhcCCC---CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 148 -K--------AEKGLVKLFNMCHSRMEEIVPK---STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 148 -~--------~~~~~v~~~~~~~~~l~~~~~~---~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
+ ....++....+| +.+...+ ...+|.|+..+ ++...++.-++++.+.++|||||..
T Consensus 131 iPDv~p~~~~~~~~~~sm~aGD---F~e~y~~~~~~~~~d~VvT~F---------FIDTA~Ni~~Yi~tI~~lLkpgG~W 198 (270)
T PF07942_consen 131 IPDVDPSSELPSPSNLSMCAGD---FLEVYGPDENKGSFDVVVTCF---------FIDTAENIIEYIETIEHLLKPGGYW 198 (270)
T ss_pred eCCcCcccccCCCCceeEecCc---cEEecCCcccCCcccEEEEEE---------EeechHHHHHHHHHHHHHhccCCEE
Confidence 0 001122222222 2222222 24677776662 4445677889999999999999944
No 254
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.85 E-value=0.00012 Score=63.49 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=77.6
Q ss_pred HhhHHHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec--
Q 041272 83 AANGVWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-- 159 (267)
Q Consensus 83 ~~~~l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-- 159 (267)
-.|......++.|.+||=+|+|+ |..+...|+.+|. .+|+.+|+++..++.|++ +.. ..+.....
T Consensus 158 ~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA----~~VVi~d~~~~Rle~Ak~-~Ga-------~~~~~~~~~~ 225 (354)
T KOG0024|consen 158 GVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGA----SDVVITDLVANRLELAKK-FGA-------TVTDPSSHKS 225 (354)
T ss_pred hhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCC----CcEEEeecCHHHHHHHHH-hCC-------eEEeeccccc
Confidence 34555556788999999999999 9999999999875 899999999999999998 432 11111111
Q ss_pred ChhhhhhcC---CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 160 CHSRMEEIV---PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 160 ~~~~l~~~~---~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
...++.+.. .....+|+.+...+. +..++.+...+++||.++++.+..
T Consensus 226 ~~~~~~~~v~~~~g~~~~d~~~dCsG~---------------~~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 226 SPQELAELVEKALGKKQPDVTFDCSGA---------------EVTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred cHHHHHHHHHhhccccCCCeEEEccCc---------------hHHHHHHHHHhccCCEEEEeccCC
Confidence 112222211 111236777766332 467788889999999987777633
No 255
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.81 E-value=0.00081 Score=62.92 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=85.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC---
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP--- 169 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~--- 169 (267)
.+..+|+|..||+|.+....++.++...-...++|.|+++.....|+.|+--++. ...+....++. +.....
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi---~~~~~i~~~dt--l~~~~~~~~ 259 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI---EGDANIRHGDT--LSNPKHDDK 259 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC---Ccccccccccc--ccCCccccc
Confidence 4677999999999999999998875311026799999999999999999988772 11233333222 222111
Q ss_pred -CCCcEEEEEEeCCCC-CCCCCce---------------eechhhHHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 170 -KSTAVRLVAFNLGYL-PGGDKSV---------------ITTSETTKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 170 -~~~~~d~ii~~~~~l-p~~d~~~---------------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
....||+|++|+++- -.+.... .........+++.+...|+|||+..|+.+.+.
T Consensus 260 ~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gv 330 (489)
T COG0286 260 DDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGV 330 (489)
T ss_pred CCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCc
Confidence 235799999999883 3332211 01112237899999999999998888777554
No 256
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.81 E-value=0.00014 Score=59.58 Aligned_cols=139 Identities=16% Similarity=0.178 Sum_probs=73.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC--
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP-- 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-- 169 (267)
++| +.|+|+|.-.|..++.+|..+..-.+.++|+|||++-...... ..+.+. +..++++++++..+......
T Consensus 31 ~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp---~~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 31 LKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHP---MSPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp H---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-------TTEEEEES-SSSTHHHHTSG
T ss_pred hCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhcc---ccCceEEEECCCCCHHHHHHHH
Confidence 444 5999999999999988876442101258999999965443222 122222 34799999998776544321
Q ss_pred ---CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec-----CC-------CCChhhHHHHH
Q 041272 170 ---KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV-----GH-------PGGREELEAVE 234 (267)
Q Consensus 170 ---~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~-----~~-------~~~~~~~~~~~ 234 (267)
......+|+.| ..|......+.|+....++++|+++++.+.. .. ..+.....++.
T Consensus 105 ~~~~~~~~vlVilD----------s~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~ 174 (206)
T PF04989_consen 105 ELASPPHPVLVILD----------SSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVK 174 (206)
T ss_dssp SS----SSEEEEES----------S----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHH
T ss_pred HhhccCCceEEEEC----------CCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHH
Confidence 12345677777 3444555667888889999999999875421 00 11223467889
Q ss_pred HHHHhCCCCceEEE
Q 041272 235 AFARSLSVDDWICC 248 (267)
Q Consensus 235 ~~~~~l~~~~~~~~ 248 (267)
+|+...+. |.+-
T Consensus 175 ~fL~~~~~--f~iD 186 (206)
T PF04989_consen 175 EFLAEHPD--FEID 186 (206)
T ss_dssp HHHHTTTT--EEEE
T ss_pred HHHHHCCC--cEec
Confidence 99998764 6643
No 257
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.78 E-value=0.0002 Score=63.24 Aligned_cols=101 Identities=23% Similarity=0.242 Sum_probs=73.1
Q ss_pred hhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc
Q 041272 89 KHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 89 ~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 167 (267)
...++||++|+=+|+|. |.++..+|+.+ +++|+++|.+++-.+.|++--. -.++.....+..+.
T Consensus 161 ~~~~~pG~~V~I~G~GGlGh~avQ~Aka~-----ga~Via~~~~~~K~e~a~~lGA----------d~~i~~~~~~~~~~ 225 (339)
T COG1064 161 KANVKPGKWVAVVGAGGLGHMAVQYAKAM-----GAEVIAITRSEEKLELAKKLGA----------DHVINSSDSDALEA 225 (339)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHc-----CCeEEEEeCChHHHHHHHHhCC----------cEEEEcCCchhhHH
Confidence 34578999999999985 78889999976 4799999999999999988422 22333222222222
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
... .+|+++...+ ...+....+.|++||.++++-.+.
T Consensus 226 ~~~--~~d~ii~tv~----------------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 226 VKE--IADAIIDTVG----------------PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred hHh--hCcEEEECCC----------------hhhHHHHHHHHhcCCEEEEECCCC
Confidence 221 2888887732 367888999999999999987763
No 258
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.68 E-value=0.0013 Score=54.02 Aligned_cols=134 Identities=15% Similarity=0.160 Sum_probs=70.4
Q ss_pred HHHHhhHHHhhhcC-CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc-----------
Q 041272 80 ITIAANGVWKHVVR-KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS----------- 147 (267)
Q Consensus 80 ~~~~~~~l~~~~l~-~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~----------- 147 (267)
..++.+..+..... ..-++.|-+||+|++.-.+.-..+. --..|+|-|+++++++.|++|+.-...
T Consensus 36 AsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~--~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~ 113 (246)
T PF11599_consen 36 ASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRR--RLRRVYASDIDEDALELARKNLSLLTPEGLEARREELR 113 (246)
T ss_dssp HHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGG--GEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhH--HHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHH
Confidence 33444444332223 3348999999999999888765443 024799999999999999999873110
Q ss_pred ------------------cc---------cccceEEEecChhhhhh--cCCCCCcEEEEEEeCCC--CCCCCCceeechh
Q 041272 148 ------------------KA---------EKGLVKLFNMCHSRMEE--IVPKSTAVRLVAFNLGY--LPGGDKSVITTSE 196 (267)
Q Consensus 148 ------------------~~---------~~~~v~~~~~~~~~l~~--~~~~~~~~d~ii~~~~~--lp~~d~~~~~~~~ 196 (267)
+. -.......+.|..+... ........|+|+.+++| +-.|... ....
T Consensus 114 ~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~--~~~~ 191 (246)
T PF11599_consen 114 ELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGE--GSGG 191 (246)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS-----HH
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCC--CCCC
Confidence 00 01112233333332111 11223357999999877 3333221 1122
Q ss_pred hHHHHHHHHHhcccCCcEEEE
Q 041272 197 TTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 197 ~~~~~l~~~~~~LkpgG~l~i 217 (267)
-..++|..++.+|-.++++++
T Consensus 192 p~~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 192 PVAQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHHHHCCS-TT-EEEE
T ss_pred cHHHHHHHHHhhCCCCcEEEE
Confidence 347899999999955555555
No 259
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.63 E-value=0.00027 Score=60.25 Aligned_cols=145 Identities=16% Similarity=0.141 Sum_probs=79.1
Q ss_pred CCCEEEEecCCCChHHHHHH-HhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc----------------c--------
Q 041272 94 KGDTVVDATCGNGYDTLMML-KMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS----------------K-------- 148 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la-~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~----------------~-------- 148 (267)
.|.++||||||+-..-..-| +. ..+++..|.++.-.+..++-+++.+. .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~------f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~ 129 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW------FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEE 129 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT------EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh------hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHH
Confidence 56799999999965543333 33 35799999999998877777665321 0
Q ss_pred ccccceE-EEecChhhhhhcCCC---CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 149 AEKGLVK-LFNMCHSRMEEIVPK---STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 149 ~~~~~v~-~~~~~~~~l~~~~~~---~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
..-..|+ ++..|......+.+. ...+|++++.+.. .......+.+..+++++.++|||||.|++....+..
T Consensus 130 ~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcL-----E~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t 204 (256)
T PF01234_consen 130 KLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCL-----ESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST 204 (256)
T ss_dssp HHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSH-----HHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S
T ss_pred HHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHH-----HHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce
Confidence 0011122 222222211111110 1248888877421 001124577889999999999999999987653321
Q ss_pred ----------CChhhHHHHHHHHHhCCCCceEEEEEee
Q 041272 225 ----------GGREELEAVEAFARSLSVDDWICCKFQM 252 (267)
Q Consensus 225 ----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (267)
......+.+.+-+ ...+|.+...+-
T Consensus 205 ~Y~vG~~~F~~l~l~ee~v~~al---~~aG~~i~~~~~ 239 (256)
T PF01234_consen 205 YYMVGGHKFPCLPLNEEFVREAL---EEAGFDIEDLEK 239 (256)
T ss_dssp EEEETTEEEE---B-HHHHHHHH---HHTTEEEEEEEG
T ss_pred eEEECCEecccccCCHHHHHHHH---HHcCCEEEeccc
Confidence 0111223333333 356788888773
No 260
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=7.6e-05 Score=58.32 Aligned_cols=136 Identities=10% Similarity=0.173 Sum_probs=88.4
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.|.+|||+|.|- |..++.+|...+ ...|.-.|-+++.++..++....+-.+ -...+..+...... .....+..
T Consensus 29 rg~~ilelgggft~laglmia~~a~----~~~v~ltdgne~svrnv~ki~~~n~~s-~~tsc~vlrw~~~~-aqsq~eq~ 102 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAP----DSSVWLTDGNEESVRNVEKIRNSNMAS-SLTSCCVLRWLIWG-AQSQQEQH 102 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecC----CceEEEecCCHHHHHHHHHHHhccccc-ccceehhhHHHHhh-hHHHHhhC
Confidence 467999999996 666777787764 489999999999999888766554210 12233222111110 00112234
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKFQ 251 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (267)
.||+|+.. ....-.+......+.+..+|+|.|..++..+ ...+.+++|.......+|.+...+
T Consensus 103 tFDiIlaA---------DClFfdE~h~sLvdtIk~lL~p~g~Al~fsP-------RRg~sL~kF~de~~~~gf~v~l~e 165 (201)
T KOG3201|consen 103 TFDIILAA---------DCLFFDEHHESLVDTIKSLLRPSGRALLFSP-------RRGQSLQKFLDEVGTVGFTVCLEE 165 (201)
T ss_pred cccEEEec---------cchhHHHHHHHHHHHHHHHhCcccceeEecC-------cccchHHHHHHHHHhceeEEEecc
Confidence 79999876 2222235557888999999999999766554 344677788888877788776543
No 261
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.59 E-value=0.00019 Score=58.24 Aligned_cols=118 Identities=12% Similarity=0.144 Sum_probs=70.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc---ccccceEEEecChhhhhhcCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK---AEKGLVKLFNMCHSRMEEIVPK 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~---~~~~~v~~~~~~~~~l~~~~~~ 170 (267)
..-.+.|||||-|.+...|+..+ |.--+.|+||--..-++.++++.+.... ....|+.+.....-.....+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~f----PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~ 135 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKF----PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFE 135 (249)
T ss_pred ccceEEeeccCccchhhhccccC----ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhh
Confidence 44578999999999999999985 4589999999999888888888764310 1244555543322211111111
Q ss_pred CCcEEEEEEeCCCCCCCCCcee---e-chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVI---T-TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~---~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+..+-.++.+ |+ ..+- + +.-.....+.+..=+|++||.++...-
T Consensus 136 kgqLskmff~f---pd--pHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 136 KGQLSKMFFLF---PD--PHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred hcccccceeec---CC--hhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 22222222221 11 1111 0 111124677788888999999987653
No 262
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.52 E-value=0.00026 Score=59.33 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=50.2
Q ss_pred hcCCCC--EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc---cc--cccccceEEEecChhh
Q 041272 91 VVRKGD--TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT---TS--KAEKGLVKLFNMCHSR 163 (267)
Q Consensus 91 ~l~~~~--~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~---~~--~~~~~~v~~~~~~~~~ 163 (267)
.++++. +|||.-+|-|..++.+|.. +++|+++|.||-+....+.-++.. .. .....++++++++..+
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~vlA~~------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAFVLASL------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHHHHHHH------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred CCCCCCCCEEEECCCcchHHHHHHHcc------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 356664 9999999999999999965 479999999998755544333222 10 0123689999988776
Q ss_pred hhhcCCCCCcEEEEEEeCCC
Q 041272 164 MEEIVPKSTAVRLVAFNLGY 183 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~ 183 (267)
+.. .++.++|+|++|+-+
T Consensus 144 ~L~--~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 144 YLR--QPDNSFDVVYFDPMF 161 (234)
T ss_dssp HCC--CHSS--SEEEE--S-
T ss_pred HHh--hcCCCCCEEEECCCC
Confidence 655 334589999999755
No 263
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.0011 Score=58.72 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=79.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
..+|||.=+|||.=++..|...+. .+|+.-|+||.+++.+++|++.|. ..+...+..|...+.... ...|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~----~~v~lNDisp~Avelik~Nv~~N~----~~~~~v~n~DAN~lm~~~--~~~f 122 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV----VKVVLNDISPKAVELIKENVRLNS----GEDAEVINKDANALLHEL--HRAF 122 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc----cEEEEccCCHHHHHHHHHHHHhcC----cccceeecchHHHHHHhc--CCCc
Confidence 579999999999999999988753 489999999999999999999983 355666665555443322 2468
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|+|=.| |++.. .-+++.+.+.++.||++.++.-
T Consensus 123 d~IDiD----PFGSP---------aPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 123 DVIDID----PFGSP---------APFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred cEEecC----CCCCC---------chHHHHHHHHhhcCCEEEEEec
Confidence 888777 33322 2688889999999999998764
No 264
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.51 E-value=0.0018 Score=55.21 Aligned_cols=127 Identities=18% Similarity=0.210 Sum_probs=75.1
Q ss_pred CEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC----
Q 041272 96 DTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP---- 169 (267)
Q Consensus 96 ~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~---- 169 (267)
...||||||- -..+-.+|+... |.++|+=+|.+|-.+..++..+..+. ..+..+++.|..+...++.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~---P~aRVVYVD~DPvv~ah~ralL~~~~----~g~t~~v~aD~r~p~~iL~~p~~ 142 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVA---PDARVVYVDNDPVVLAHARALLADNP----RGRTAYVQADLRDPEAILAHPEV 142 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH----TT-EEEEEESSHHHHHCCHHHHTT-T----TSEEEEEE--TT-HHHHHCSHHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhC---CCceEEEECCCchHHHHHHhhhcCCC----CccEEEEeCCCCCHHHHhcCHHH
Confidence 4799999996 334566777764 47999999999999999999887754 2347888887776555432
Q ss_pred -----CCCcEEEEEEe-CCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHH
Q 041272 170 -----KSTAVRLVAFN-LGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFAR 238 (267)
Q Consensus 170 -----~~~~~d~ii~~-~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 238 (267)
-+.++-+++.. ++++++ .+++..++..+.+.|.||..|+++-..... ..+..+.+...++
T Consensus 143 ~~~lD~~rPVavll~~vLh~v~D--------~~dp~~iv~~l~d~lapGS~L~ish~t~d~-~p~~~~~~~~~~~ 208 (267)
T PF04672_consen 143 RGLLDFDRPVAVLLVAVLHFVPD--------DDDPAGIVARLRDALAPGSYLAISHATDDG-APERAEALEAVYA 208 (267)
T ss_dssp HCC--TTS--EEEECT-GGGS-C--------GCTHHHHHHHHHCCS-TT-EEEEEEEB-TT-SHHHHHHHHHHHH
T ss_pred HhcCCCCCCeeeeeeeeeccCCC--------ccCHHHHHHHHHHhCCCCceEEEEecCCCC-CHHHHHHHHHHHH
Confidence 12233333332 233332 245689999999999999999998775432 3333344444443
No 265
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.49 E-value=0.0014 Score=58.31 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=65.7
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
...++++||=.|||. |..+..+|+..+. .+|+++|.+++.++.+++. | .. .++.....++.+...
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~----~~Vi~~~~~~~~~~~a~~l----G----a~--~vi~~~~~~~~~~~~ 231 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGA----AEIVCADVSPRSLSLAREM----G----AD--KLVNPQNDDLDHYKA 231 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----cEEEEEeCCHHHHHHHHHc----C----Cc--EEecCCcccHHHHhc
Confidence 345788999999987 7888888888642 4799999999988888752 2 01 111111112222221
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....+|+++-..+. ...+..+.+.|++||++++...
T Consensus 232 ~~g~~D~vid~~G~---------------~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 232 EKGYFDVSFEVSGH---------------PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred cCCCCCEEEECCCC---------------HHHHHHHHHHhhcCCEEEEEcc
Confidence 12247777766432 3567888999999999987654
No 266
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.48 E-value=0.001 Score=59.59 Aligned_cols=105 Identities=24% Similarity=0.251 Sum_probs=73.2
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-C-hhhhhhcCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-C-HSRMEEIVP 169 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~-~~~l~~~~~ 169 (267)
.++.+|+=+|||+ |.++..+++..|. .+|+.+|.+++-++.|++...... +..... + .....+. .
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga----~~Viv~d~~~~Rl~~A~~~~g~~~-------~~~~~~~~~~~~~~~~-t 234 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGA----SVVIVVDRSPERLELAKEAGGADV-------VVNPSEDDAGAEILEL-T 234 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC----ceEEEeCCCHHHHHHHHHhCCCeE-------eecCccccHHHHHHHH-h
Confidence 4455999999999 9999999999864 899999999999999988443211 110000 0 1111111 1
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
....+|+++-..+. ..++.++.+.++|||.++++..++..
T Consensus 235 ~g~g~D~vie~~G~---------------~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 235 GGRGADVVIEAVGS---------------PPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCCCCCEEEECCCC---------------HHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 12258888887542 46899999999999999998776544
No 267
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.46 E-value=2.4e-05 Score=63.51 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=63.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
..++||+|.|.|.++..++..+ .+|++.|.|..|....++. + ..-+..+ +....+.++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f------eevyATElS~tMr~rL~kk----~----ynVl~~~--------ew~~t~~k~ 170 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF------EEVYATELSWTMRDRLKKK----N----YNVLTEI--------EWLQTDVKL 170 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH------HHHHHHHhhHHHHHHHhhc----C----Cceeeeh--------hhhhcCcee
Confidence 4699999999999999999886 5799999999998776552 1 1111111 122234467
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccC-CcEEEEE
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIP-GGLISMV 218 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~ 218 (267)
|+|.+- .++..-.++-+.++.+..+|.| +|++++.
T Consensus 171 dli~cl---------NlLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 171 DLILCL---------NLLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ehHHHH---------HHHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 877443 1222223446899999999999 8888764
No 268
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.44 E-value=0.013 Score=49.29 Aligned_cols=124 Identities=11% Similarity=0.116 Sum_probs=68.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS-- 171 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~-- 171 (267)
.|.+||=+|=+- ..++.+|.. +. ..+|+.+|+++..++..++.+++.+ . +++.+.. |+...+++.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~-~~---~~~I~VvDiDeRll~fI~~~a~~~g----l-~i~~~~~---DlR~~LP~~~~ 110 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALT-GL---PKRITVVDIDERLLDFINRVAEEEG----L-PIEAVHY---DLRDPLPEELR 110 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHH-T-----SEEEEE-S-HHHHHHHHHHHHHHT-------EEEE------TTS---TTTS
T ss_pred cCCEEEEEcCCc-HHHHHHHhh-CC---CCeEEEEEcCHHHHHHHHHHHHHcC----C-ceEEEEe---cccccCCHHHh
Confidence 578999998433 233334432 22 4799999999999999999999987 2 3666653 344444432
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCc-EEEEEEecCCCCChhhHHHHHHHHHhCC
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG-LISMVVYVGHPGGREELEAVEAFARSLS 241 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG-~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 241 (267)
..||+++.|++|- .+...-++.+....||..| ..++..- ..+.+......+++.+..+.
T Consensus 111 ~~fD~f~TDPPyT----------~~G~~LFlsRgi~~Lk~~g~~gy~~~~-~~~~s~~~~~~~Q~~l~~~g 170 (243)
T PF01861_consen 111 GKFDVFFTDPPYT----------PEGLKLFLSRGIEALKGEGCAGYFGFT-HKEASPDKWLEVQRFLLEMG 170 (243)
T ss_dssp S-BSEEEE---SS----------HHHHHHHHHHHHHTB-STT-EEEEEE--TTT--HHHHHHHHHHHHTS-
T ss_pred cCCCEEEeCCCCC----------HHHHHHHHHHHHHHhCCCCceEEEEEe-cCcCcHHHHHHHHHHHHHCC
Confidence 5899999998772 3555788999999999666 5444333 22223445556666666443
No 269
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.37 E-value=0.00083 Score=59.03 Aligned_cols=98 Identities=20% Similarity=0.192 Sum_probs=69.6
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
-...+|+|.|.|..+..+...+ .+|-+++.+...+..++..+. .| |+.+-+| +....|+ -
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f------p~ik~infdlp~v~~~a~~~~-~g-------V~~v~gd---mfq~~P~---~ 237 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY------PHIKGINFDLPFVLAAAPYLA-PG-------VEHVAGD---MFQDTPK---G 237 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC------CCCceeecCHHHHHhhhhhhc-CC-------cceeccc---ccccCCC---c
Confidence 3789999999999999999864 358899998888888877664 22 4444333 2333332 3
Q ss_pred EEEEEeCCCCCCCCCceeech--hhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 175 RLVAFNLGYLPGGDKSVITTS--ETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
|+|+.- -++|+. ++..++|+++++.|+|||.+++.+..
T Consensus 238 daI~mk---------WiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 238 DAIWMK---------WILHDWTDEDCVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred CeEEEE---------eecccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 466655 233322 34579999999999999999998773
No 270
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.32 E-value=0.00076 Score=56.04 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=44.1
Q ss_pred chhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 77 GTLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 77 ~~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
......+.+.+++..-.+|+.|||.-||+|..+....+. +.+.+|+|++++.++.|++
T Consensus 174 ~~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l------~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 174 TQKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL------GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp T-S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT------T-EEEEEESSHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHc------CCeEEEEeCCHHHHHHhcC
Confidence 355667778887777789999999999999888777765 5789999999999999875
No 271
>PRK11524 putative methyltransferase; Provisional
Probab=97.27 E-value=0.00096 Score=58.06 Aligned_cols=61 Identities=20% Similarity=0.137 Sum_probs=50.4
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhh
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~ 144 (267)
....++...++...-.+|+.|||.-||+|..+....+. +.+.+|+|++++.++.|++++..
T Consensus 192 ~kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l------gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 192 QKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS------GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred cChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHh
Confidence 44556677777666679999999999999888776665 57899999999999999999864
No 272
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.26 E-value=0.019 Score=47.49 Aligned_cols=120 Identities=11% Similarity=0.098 Sum_probs=82.3
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
++.+.++.||||--|++...|.+... ...+++.|+++..++.|.++.++++ ...+++...+|. ...+..+
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~~----~~~~va~eV~~gpl~~a~~~v~~~~---l~~~i~vr~~dg---l~~l~~~ 83 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNNP----ASTAVAGEVVPGPLESAIRNVKKNN---LSERIDVRLGDG---LAVLELE 83 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcCC----cceEEEeecccCHHHHHHHHHHhcC---CcceEEEeccCC---ccccCcc
Confidence 45677799999999999999998753 5899999999999999999999988 577777776554 3333333
Q ss_pred CcEEEEE-EeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhC
Q 041272 172 TAVRLVA-FNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSL 240 (267)
Q Consensus 172 ~~~d~ii-~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l 240 (267)
..+|.++ ..+| .....+++++-.+.|+.--++++ .+.. ....+.+|+...
T Consensus 84 d~~d~ivIAGMG------------G~lI~~ILee~~~~l~~~~rlIL-QPn~------~~~~LR~~L~~~ 134 (226)
T COG2384 84 DEIDVIVIAGMG------------GTLIREILEEGKEKLKGVERLIL-QPNI------HTYELREWLSAN 134 (226)
T ss_pred CCcCEEEEeCCc------------HHHHHHHHHHhhhhhcCcceEEE-CCCC------CHHHHHHHHHhC
Confidence 3566554 3332 13345777777777664434433 2221 235566777654
No 273
>PRK13699 putative methylase; Provisional
Probab=97.17 E-value=0.0015 Score=54.91 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=51.5
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT 145 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~ 145 (267)
..+.++...++...-.+|+.|||.-||+|..+....+. +.+.+|+|++++..+.|++++++.
T Consensus 147 ~kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~------~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 147 EKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS------GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 55666777777666678999999999999888777665 468999999999999999998763
No 274
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.15 E-value=0.0078 Score=51.80 Aligned_cols=117 Identities=14% Similarity=0.037 Sum_probs=84.8
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
..-++||-||-|-|......+++- . -..+.-+|++...++..++-+....-.....++.+..+|...+.+.... .
T Consensus 120 ~npkkvlVVgggDggvlrevikH~-~---ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~-~ 194 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHK-S---VENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE-N 194 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccc-c---ccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc-C
Confidence 445799999999999999988872 2 2578999999999999999887653223457888888887777665543 4
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+||+|+.+..-.-. -...-..+.+++.+.+.||+||+++...
T Consensus 195 ~~dVii~dssdpvg-----pa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 195 PFDVIITDSSDPVG-----PACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred CceEEEEecCCccc-----hHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 89999988321100 0112234677888999999999997653
No 275
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.00071 Score=61.79 Aligned_cols=108 Identities=18% Similarity=0.210 Sum_probs=83.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh-hhcCCCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM-EEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l-~~~~~~~~ 172 (267)
++-+|||.=|++|.-++..|+.++. -.+|++-|.++.+|+..++|.+.++ ....++..+.|+..+ ........
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~---v~~v~AnD~~~~aV~~i~~Nv~~N~---v~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPG---VRQVVANDLNENAVTSIQRNVELNG---VEDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcc---hhhhcccCCCHHHHHHHHhhhhhcC---chhhcccccchHHHHHHhcccccc
Confidence 4569999999999999999999864 4689999999999999999999886 345555555555433 22232334
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.||+|=.| |++.. ..+|+.+.+.+..||+|.+++-
T Consensus 183 ~FDvIDLD----PyGs~---------s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 183 FFDVIDLD----PYGSP---------SPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ccceEecC----CCCCc---------cHHHHHHHHHhhcCCEEEEEec
Confidence 78998887 33322 3799999999999999998764
No 276
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.12 E-value=0.0064 Score=55.77 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=83.9
Q ss_pred hhHHHHhhHHHhhhcCCCC-EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEE
Q 041272 78 TLITIAANGVWKHVVRKGD-TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL 156 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~-~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~ 156 (267)
+...-.+...+...+.+-. ++|-+|||.-.++..+.+-. -..|+.+|+|+..++.+....... .....+
T Consensus 31 Y~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G-----~~dI~~iD~S~V~V~~m~~~~~~~-----~~~~~~ 100 (482)
T KOG2352|consen 31 YGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNG-----FEDITNIDSSSVVVAAMQVRNAKE-----RPEMQM 100 (482)
T ss_pred HHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcC-----CCCceeccccHHHHHHHHhccccC-----CcceEE
Confidence 3333344444555667777 99999999998888887642 357999999999999888765432 234444
Q ss_pred EecChhhhhhcCCCCCcEEEEEEe--CCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 157 FNMCHSRMEEIVPKSTAVRLVAFN--LGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~d~ii~~--~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.. .++.....++.+||+++.- +..+-..... ..+.......+.++.++|+|||++..+.+
T Consensus 101 ~~---~d~~~l~fedESFdiVIdkGtlDal~~de~a-~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 101 VE---MDMDQLVFEDESFDIVIDKGTLDALFEDEDA-LLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred EE---ecchhccCCCcceeEEEecCccccccCCchh-hhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 44 3445555667788888643 1111111111 11124456788999999999999877766
No 277
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.09 E-value=0.0016 Score=53.63 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=69.3
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVR 175 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d 175 (267)
-++|||||=+......-... ..|+.||+++.--. ..+.+|... .+.. .++..||
T Consensus 53 lrlLEVGals~~N~~s~~~~-------fdvt~IDLns~~~~--------------I~qqDFm~r---plp~--~~~e~Fd 106 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW-------FDVTRIDLNSQHPG--------------ILQQDFMER---PLPK--NESEKFD 106 (219)
T ss_pred ceEEeecccCCCCcccccCc-------eeeEEeecCCCCCC--------------ceeeccccC---CCCC--Cccccee
Confidence 59999999876655443322 57999999872110 112223220 1111 1345899
Q ss_pred EEEEeC--CCCCCCCCceeechhhHHHHHHHHHhcccCCcE-----EEEEEecCCCCCh--hhHHHHHHHHHhCCCCceE
Q 041272 176 LVAFNL--GYLPGGDKSVITTSETTKMALEAAERILIPGGL-----ISMVVYVGHPGGR--EELEAVEAFARSLSVDDWI 246 (267)
Q Consensus 176 ~ii~~~--~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~ 246 (267)
+|++.+ -|+| .+...-++++.+.+.|+|+|. |+++.+..+.... -..+.+...++. -+|.
T Consensus 107 vIs~SLVLNfVP--------~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~---LGf~ 175 (219)
T PF11968_consen 107 VISLSLVLNFVP--------DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMES---LGFT 175 (219)
T ss_pred EEEEEEEEeeCC--------CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHh---CCcE
Confidence 998885 2233 345667999999999999999 8887764332111 112333344444 4566
Q ss_pred EEEEe
Q 041272 247 CCKFQ 251 (267)
Q Consensus 247 ~~~~~ 251 (267)
.+++.
T Consensus 176 ~~~~~ 180 (219)
T PF11968_consen 176 RVKYK 180 (219)
T ss_pred EEEEE
Confidence 66543
No 278
>PHA01634 hypothetical protein
Probab=97.03 E-value=0.0035 Score=47.17 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=42.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~ 146 (267)
.+.+|+|||.+-|..++.++.. | +.+|++++.++...+..+++++.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-G----AK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-G----ASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-C----ccEEEEeccCHHHHHHHHHHhhhhe
Confidence 5789999999999999999976 2 4799999999999999999888754
No 279
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.01 Score=45.90 Aligned_cols=77 Identities=8% Similarity=-0.005 Sum_probs=55.7
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
++.++.+|+|+|.|++.+..++.. ...-+|+|+++-.+.+++-++-+.+ ..+...|.. .|+.+....++
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g-----~~~a~GvELNpwLVaysrl~a~R~g---~~k~trf~R---kdlwK~dl~dy 139 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCG-----LRPAVGVELNPWLVAYSRLHAWRAG---CAKSTRFRR---KDLWKVDLRDY 139 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhC-----CCcCCceeccHHHHHHHHHHHHHHh---cccchhhhh---hhhhhcccccc
Confidence 566799999999999999998863 2467999999999999999887766 345555553 45555444444
Q ss_pred cEEEEEEe
Q 041272 173 AVRLVAFN 180 (267)
Q Consensus 173 ~~d~ii~~ 180 (267)
.+.+|+..
T Consensus 140 ~~vviFga 147 (199)
T KOG4058|consen 140 RNVVIFGA 147 (199)
T ss_pred ceEEEeeh
Confidence 44444443
No 280
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.88 E-value=0.00042 Score=59.47 Aligned_cols=104 Identities=21% Similarity=0.278 Sum_probs=67.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.+..|+|+..|-|++++...-..+ ...|+++|.+|.+++.-+++++.|+ ...+..++.++.. ....+..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag----Ak~V~A~EwNp~svEaLrR~~~~N~---V~~r~~i~~gd~R----~~~~~~~ 262 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG----AKTVFACEWNPWSVEALRRNAEANN---VMDRCRITEGDNR----NPKPRLR 262 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC----ccEEEEEecCHHHHHHHHHHHHhcc---hHHHHHhhhcccc----ccCcccc
Confidence 568999999999999994443444 4799999999999999999999876 3344433333321 1222234
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCc--EEEEEEec
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGG--LISMVVYV 221 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG--~l~i~~~~ 221 (267)
.|-| ++|.+|... +-+-.+.++|||.| ++-|....
T Consensus 263 AdrV--nLGLlPSse-----------~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 263 ADRV--NLGLLPSSE-----------QGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred chhe--eeccccccc-----------cchHHHHHHhhhcCCcEEEEeccc
Confidence 4544 345566653 44556677788654 56555443
No 281
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.85 E-value=0.022 Score=49.27 Aligned_cols=132 Identities=12% Similarity=0.012 Sum_probs=72.1
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEE
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL 176 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ 176 (267)
+|+|+.||.|.++..+.+. | ...|.++|+++.+++..+.|.... ++.+|..++..... ...+|+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G----~~~v~a~e~~~~a~~~~~~N~~~~----------~~~~Di~~~~~~~~-~~~~D~ 65 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G----FEIVAANEIDKSAAETYEANFPNK----------LIEGDITKIDEKDF-IPDIDL 65 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C----CEEEEEEeCCHHHHHHHHHhCCCC----------CccCccccCchhhc-CCCCCE
Confidence 6999999999998888765 2 246789999999999888876431 23333333322110 236899
Q ss_pred EEEeCCCCCCCCCceee---ch-h-hHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEE
Q 041272 177 VAFNLGYLPGGDKSVIT---TS-E-TTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWIC 247 (267)
Q Consensus 177 ii~~~~~lp~~d~~~~~---~~-~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 247 (267)
++..++.=+++....-. .. . ....++ ++.+.++|. +++......-...........+.+.+...+|.+
T Consensus 66 l~~gpPCq~fS~ag~~~~~~d~r~~L~~~~~-~~i~~~~P~--~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~ 138 (275)
T cd00315 66 LTGGFPCQPFSIAGKRKGFEDTRGTLFFEII-RILKEKKPK--YFLLENVKGLLTHDNGNTLKVILNTLEELGYNV 138 (275)
T ss_pred EEeCCCChhhhHHhhcCCCCCchHHHHHHHH-HHHHhcCCC--EEEEEcCcchhccCchHHHHHHHHHHHhCCcEE
Confidence 99997663332211101 11 1 112333 344455776 333333221111111334555555665566664
No 282
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.78 E-value=0.0099 Score=53.88 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=71.2
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC--hhhhhhc
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC--HSRMEEI 167 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 167 (267)
.+.++.+||..|||. |..+..+|+..+. .+|+++|.+++..+.+++.... ..+.....+ ...+.+.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~----~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~ 249 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGA----ERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALREL 249 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHH
Confidence 466889999999998 8899999998752 4699999999999888874211 111111110 1112222
Q ss_pred CCCCCcEEEEEEeCCCCCC------CCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 VPKSTAVRLVAFNLGYLPG------GDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~------~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. .+..+|+++-..+.-.. --....+...+....++++.+.|+++|.+++...
T Consensus 250 ~-~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 250 T-GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred c-CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 2 22357877765321000 0000011122335678999999999999987653
No 283
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.77 E-value=0.0027 Score=57.28 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=47.8
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM 159 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~ 159 (267)
.|||||+|||.++..+++... -.|+++|.-.-|++.|++...+++ +.+++.++..
T Consensus 69 ~vLdigtGTGLLSmMAvraga-----D~vtA~EvfkPM~d~arkI~~kng---~SdkI~vInk 123 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA-----DSVTACEVFKPMVDLARKIMHKNG---MSDKINVINK 123 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC-----CeEEeehhhchHHHHHHHHHhcCC---Cccceeeecc
Confidence 699999999999998888742 479999999999999999999988 6778887753
No 284
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.72 E-value=0.015 Score=52.03 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=61.8
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeC---ChHHHHHHHHHHhhccccccccceEEEecChhhhhhc
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDI---QSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~---s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 167 (267)
+.++.+||=+|+|. |.++..+|+..+ .+|++++. +++..+.+++ .+ . +.+.....++.+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G-----~~vi~~~~~~~~~~~~~~~~~----~G----a---~~v~~~~~~~~~- 232 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG-----FEVYVLNRRDPPDPKADIVEE----LG----A---TYVNSSKTPVAE- 232 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC-----CeEEEEecCCCCHHHHHHHHH----cC----C---EEecCCccchhh-
Confidence 45788999999987 888888888864 58999987 5666666654 22 1 112111111111
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
......+|+++-..+. ...+.++.+.|++||.+++...
T Consensus 233 ~~~~~~~d~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 233 VKLVGEFDLIIEATGV---------------PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred hhhcCCCCEEEECcCC---------------HHHHHHHHHHccCCcEEEEEec
Confidence 1112357777766432 2478888999999999977654
No 285
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.72 E-value=0.0027 Score=55.59 Aligned_cols=120 Identities=17% Similarity=0.208 Sum_probs=76.1
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHH-------HHHHHhhccccccccceEEEecChhh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKS-------TSSLLDKTTSKAEKGLVKLFNMCHSR 163 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~-------a~~~~~~~~~~~~~~~v~~~~~~~~~ 163 (267)
.+++|+.|+|--.|||.+....|.. ++.|+|.||+-.++.. .+.|++..+.. ..-+.++.+|..+
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~F------Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~--~~fldvl~~D~sn 276 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHF------GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS--SQFLDVLTADFSN 276 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhh------cceeeccccchheeecccCCCcchhHhHHHhCCc--chhhheeeecccC
Confidence 4679999999999999999999987 6899999999988872 34455554410 1112233322221
Q ss_pred hhhcCCCCCcEEEEEEeCCC-CCCCCCc---------------eeech--------hhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGY-LPGGDKS---------------VITTS--------ETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~-lp~~d~~---------------~~~~~--------~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
- .+..+..||.|+++++| +...-+. ..|.+ .-....|.-+.+.|.-||++++..
T Consensus 277 ~--~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 277 P--PLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred c--chhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 1 12235589999999988 2211110 11111 112445667789999999997755
Q ss_pred e
Q 041272 220 Y 220 (267)
Q Consensus 220 ~ 220 (267)
+
T Consensus 355 p 355 (421)
T KOG2671|consen 355 P 355 (421)
T ss_pred C
Confidence 4
No 286
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=96.68 E-value=0.015 Score=51.74 Aligned_cols=95 Identities=21% Similarity=0.197 Sum_probs=62.3
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHh-cCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKM-VADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~-~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
+++|++||=+|||. |..+..+++. .+ +.+|+++|.+++.++.|++ +.. ...+ .++.+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g----~~~vi~~~~~~~k~~~a~~-~~~---------~~~~----~~~~~--- 219 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYP----ESKLVVFGKHQEKLDLFSF-ADE---------TYLI----DDIPE--- 219 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcC----CCcEEEEeCcHhHHHHHhh-cCc---------eeeh----hhhhh---
Confidence 56899999999987 6677777765 33 3689999999988888764 211 1111 11111
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...+|+++-..+- ......++++.++|++||++++...
T Consensus 220 -~~g~d~viD~~G~------------~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 220 -DLAVDHAFECVGG------------RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred -ccCCcEEEECCCC------------CccHHHHHHHHHhCcCCcEEEEEee
Confidence 1136777765431 0013578889999999999987654
No 287
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.67 E-value=0.078 Score=44.96 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=75.3
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc--ccccceEE--EecChhhhhhcCCC
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK--AEKGLVKL--FNMCHSRMEEIVPK 170 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~--~~~~~v~~--~~~~~~~l~~~~~~ 170 (267)
..+||++|+|+|..++.+|... +.+|+--|..... +.-+.+...++.. .....+.. .............+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~-----~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~ 160 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL-----GAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLP 160 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh-----cceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccC
Confidence 4579999999998888888865 4688888865543 3333333222110 01113332 22222222222222
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEEE
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCKF 250 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (267)
. .+|+++.. .+...+.....++.-+..+|..+|.+++...-... ................+.+...
T Consensus 161 ~-~~Dlilas---------Dvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~~----~~~~~~~~~~~~~~~~~~v~~~ 226 (248)
T KOG2793|consen 161 N-PFDLILAS---------DVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRRD----AAWEIEVLLFKKDLKIFDVVQE 226 (248)
T ss_pred C-cccEEEEe---------eeeecCCcchhHHHHHHHHHhcCCeEEEEEecccc----hHHHHHHHHhhhhhccceeeeE
Confidence 1 17888876 45556666678888888899999955554442211 1122333334444445555544
Q ss_pred ee
Q 041272 251 QM 252 (267)
Q Consensus 251 ~~ 252 (267)
.+
T Consensus 227 ~~ 228 (248)
T KOG2793|consen 227 SF 228 (248)
T ss_pred ec
Confidence 44
No 288
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.66 E-value=0.011 Score=44.66 Aligned_cols=88 Identities=24% Similarity=0.317 Sum_probs=61.9
Q ss_pred CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh----hhhhcCCCCCcEEEEEE
Q 041272 104 GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS----RMEEIVPKSTAVRLVAF 179 (267)
Q Consensus 104 G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~----~l~~~~~~~~~~d~ii~ 179 (267)
|.|..+..+|+..| .+|+++|.++...+.+++.-. -.++..... .+.+... +..+|+++-
T Consensus 1 ~vG~~a~q~ak~~G-----~~vi~~~~~~~k~~~~~~~Ga----------~~~~~~~~~~~~~~i~~~~~-~~~~d~vid 64 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-----AKVIATDRSEEKLELAKELGA----------DHVIDYSDDDFVEQIRELTG-GRGVDVVID 64 (130)
T ss_dssp HHHHHHHHHHHHTT-----SEEEEEESSHHHHHHHHHTTE----------SEEEETTTSSHHHHHHHHTT-TSSEEEEEE
T ss_pred ChHHHHHHHHHHcC-----CEEEEEECCHHHHHHHHhhcc----------cccccccccccccccccccc-cccceEEEE
Confidence 45888999999873 799999999999888876321 112222222 2223332 247999988
Q ss_pred eCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 180 NLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 180 ~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
..+. ...++.+.++|++||.++++...+
T Consensus 65 ~~g~---------------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 65 CVGS---------------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSSS---------------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ecCc---------------HHHHHHHHHHhccCCEEEEEEccC
Confidence 8542 478999999999999998877654
No 289
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.63 E-value=0.021 Score=53.62 Aligned_cols=105 Identities=13% Similarity=0.172 Sum_probs=67.0
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----------
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH---------- 161 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~---------- 161 (267)
.++++|+=+|+|. |..++..|+.+| ++|+++|.+++.++.+++- | .....+....
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-----A~V~a~D~~~~rle~aesl----G-----A~~v~i~~~e~~~~~~gya~ 228 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-----AIVRAFDTRPEVAEQVESM----G-----AEFLELDFEEEGGSGDGYAK 228 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-----CEEEEEeCCHHHHHHHHHc----C-----CeEEEeccccccccccchhh
Confidence 4789999999999 899999999875 5899999999999988772 2 1101011000
Q ss_pred ---hhh----hhcCCC-CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 162 ---SRM----EEIVPK-STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 162 ---~~l----~~~~~~-~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+. .+.+.+ -..+|+++...+. |.. +.+..+.+++.+.+||||.++.+..
T Consensus 229 ~~s~~~~~~~~~~~~~~~~gaDVVIetag~-pg~--------~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 229 VMSEEFIKAEMALFAEQAKEVDIIITTALI-PGK--------PAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hcchhHHHHHHHHHHhccCCCCEEEECCCC-Ccc--------cCcchHHHHHHHhcCCCCEEEEEcc
Confidence 010 011111 1258999887543 110 1112335999999999999877654
No 290
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.60 E-value=0.03 Score=48.33 Aligned_cols=99 Identities=17% Similarity=0.087 Sum_probs=63.1
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec--ChhhhhhcC
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM--CHSRMEEIV 168 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 168 (267)
..++++||=+|+|+ |..+..+|+..+. .+|+++|.+++..+.+++. + .. .++.. ....+....
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~----~~Vi~~~~~~~r~~~a~~~----G----a~--~~i~~~~~~~~~~~~~ 183 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGA----ARVVAADPSPDRRELALSF----G----AT--ALAEPEVLAERQGGLQ 183 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHHc----C----Cc--EecCchhhHHHHHHHh
Confidence 45788999999877 7777888887642 3599999999888777652 2 00 11110 011111111
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....+|+++-..+. ...++.+.+.|+++|++++...
T Consensus 184 -~~~g~d~vid~~G~---------------~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 184 -NGRGVDVALEFSGA---------------TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred -CCCCCCEEEECCCC---------------hHHHHHHHHHhcCCCEEEEecc
Confidence 12247777765321 3578888999999999987654
No 291
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.59 E-value=0.034 Score=47.01 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=39.3
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcc
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTT 146 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~ 146 (267)
.+.+..+|+|||||-=-++..+.... ++..++|+|++..+++...+-+...+
T Consensus 102 ~~~~p~sVlDigCGlNPlalp~~~~~----~~a~Y~a~DID~~~ve~l~~~l~~l~ 153 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLNPLALPWMPEA----PGATYIAYDIDSQLVEFLNAFLAVLG 153 (251)
T ss_dssp CS---SEEEEET-TTCHHHHHTTTSS----TT-EEEEEESBHHHHHHHHHHHHHTT
T ss_pred cCCCCchhhhhhccCCceehhhcccC----CCcEEEEEeCCHHHHHHHHHHHHhhC
Confidence 34557899999999988888766543 35799999999999999999888765
No 292
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=96.45 E-value=0.031 Score=50.31 Aligned_cols=100 Identities=22% Similarity=0.209 Sum_probs=65.0
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----h
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----M 164 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l 164 (267)
..++++++||=.|+|. |..+..+|+..+. .+|+++|.+++..+.+++. + . -.++.....+ +
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~----~~Vi~~~~~~~r~~~a~~~----G----a--~~~i~~~~~~~~~~i 252 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGA----SQVVAVDLNEDKLALAREL----G----A--TATVNAGDPNAVEQV 252 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CcEEEEcCCHHHHHHHHHc----C----C--ceEeCCCchhHHHHH
Confidence 3467889999999876 7777888887642 3799999999988887652 2 0 1112111112 2
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..... . .+|+++-..+. ...+..+.+.|++||.+++...
T Consensus 253 ~~~~~-~-g~d~vid~~G~---------------~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 253 RELTG-G-GVDYAFEMAGS---------------VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred HHHhC-C-CCCEEEECCCC---------------hHHHHHHHHHHhcCCEEEEEcc
Confidence 22221 2 47888765322 2577888899999999987554
No 293
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=96.42 E-value=0.11 Score=44.18 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=74.0
Q ss_pred CCEEEEecCCCChHHHHHHHhcCC-CCCCcEEEEEeCChH--------------------------HHHHHHHHHhhccc
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVAD-ESSAGCVYGLDIQSE--------------------------ALKSTSSLLDKTTS 147 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~-~~p~~~v~giD~s~~--------------------------~i~~a~~~~~~~~~ 147 (267)
.+.|+|+||-.|..++.++..+.. ..++.++++.|--+. .++..++++.+.+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g- 153 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG- 153 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT-
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC-
Confidence 359999999999888766543311 012468999874332 2444445554443
Q ss_pred cccccceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCCh
Q 041272 148 KAEKGLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGR 227 (267)
Q Consensus 148 ~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 227 (267)
....++.++.+...+-....+ ...+-++..+. ...+....+|+.++..|.|||++++-++.. .
T Consensus 154 -l~~~~v~~vkG~F~dTLp~~p-~~~IAll~lD~-----------DlYesT~~aLe~lyprl~~GGiIi~DDY~~----~ 216 (248)
T PF05711_consen 154 -LLDDNVRFVKGWFPDTLPDAP-IERIALLHLDC-----------DLYESTKDALEFLYPRLSPGGIIIFDDYGH----P 216 (248)
T ss_dssp -TSSTTEEEEES-HHHHCCC-T-T--EEEEEE--------------SHHHHHHHHHHHGGGEEEEEEEEESSTTT----H
T ss_pred -CCcccEEEECCcchhhhccCC-CccEEEEEEec-----------cchHHHHHHHHHHHhhcCCCeEEEEeCCCC----h
Confidence 123678888766643222111 12343443331 135667899999999999999999877743 3
Q ss_pred hhHHHHHHHHHhCCC
Q 041272 228 EELEAVEAFARSLSV 242 (267)
Q Consensus 228 ~~~~~~~~~~~~l~~ 242 (267)
...+++.+|.++...
T Consensus 217 gcr~AvdeF~~~~gi 231 (248)
T PF05711_consen 217 GCRKAVDEFRAEHGI 231 (248)
T ss_dssp HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCC
Confidence 456888999887554
No 294
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.41 E-value=0.034 Score=49.76 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=64.4
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----hh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----ME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l~ 165 (267)
.++++++||=.|+|. |..+..+|+..+. .+|+++|.+++..+.+++. + .. .++.....+ +.
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~----~~Vi~~~~~~~~~~~~~~~----G----a~--~~i~~~~~~~~~~i~ 238 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGA----SKIIAVDIDDRKLEWAREF----G----AT--HTVNSSGTDPVEAIR 238 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHHHHc----C----Cc--eEEcCCCcCHHHHHH
Confidence 467899999999876 7777888887642 3699999999988888642 2 01 112111111 22
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
... ....+|+++-..+. ...++.+.+.+++||++++...
T Consensus 239 ~~~-~~~g~d~vid~~g~---------------~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 239 ALT-GGFGADVVIDAVGR---------------PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred HHh-CCCCCCEEEECCCC---------------HHHHHHHHHHhccCCEEEEECC
Confidence 222 22247777765321 2567788899999999987654
No 295
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.32 E-value=0.022 Score=45.42 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=71.7
Q ss_pred ecCCCChHHHHHHHhcCCCCCCcEEEE--EeCChHHHHH---HHHHHhhccccccccceEEE-ecChhhhhhcC-CCCCc
Q 041272 101 ATCGNGYDTLMMLKMVADESSAGCVYG--LDIQSEALKS---TSSLLDKTTSKAEKGLVKLF-NMCHSRMEEIV-PKSTA 173 (267)
Q Consensus 101 lGcG~G~~~~~la~~~~~~~p~~~v~g--iD~s~~~i~~---a~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~-~~~~~ 173 (267)
+|=|.=.++..|++..+. +..+++ .|-.++..+. +.++++... ...+.++ .-|+.++.+.. .....
T Consensus 3 vGeGdfSFs~sL~~~~~~---~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~----~~g~~V~~~VDat~l~~~~~~~~~~ 75 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGS---ATNLVATSYDSEEELLQKYPDAEENLEELR----ELGVTVLHGVDATKLHKHFRLKNQR 75 (166)
T ss_pred eeccchHHHHHHHHHcCC---CCeEEEeecCchHHHHHhcccHHHHHHHHh----hcCCccccCCCCCcccccccccCCc
Confidence 555666777888888763 355655 4555444443 235554432 2233333 23444555543 23458
Q ss_pred EEEEEEeCCCCCCCCC----ceeechhhHHHHHHHHHhcccCCcEEEEEEecCCC
Q 041272 174 VRLVAFNLGYLPGGDK----SVITTSETTKMALEAAERILIPGGLISMVVYVGHP 224 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 224 (267)
||.|++|+|+...... .+..+..-...+++.+.++|+++|.+.|+...+.+
T Consensus 76 FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 76 FDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred CCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 9999999988752211 11123344578999999999999999998886655
No 296
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.23 E-value=0.039 Score=47.97 Aligned_cols=107 Identities=17% Similarity=0.187 Sum_probs=62.4
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHh---hccccccc-------------cceE---
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD---KTTSKAEK-------------GLVK--- 155 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~---~~~~~~~~-------------~~v~--- 155 (267)
..+||--|||.|+++..||.. +-++-|=|.|--|+-...=-+. ..+.-... +++.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~------G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~ 224 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL------GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPIS 224 (369)
T ss_pred CceEEecCCCchhHHHHHHHh------cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccccccccccccc
Confidence 558999999999999999987 3566677888777643332221 10100000 0000
Q ss_pred -----E---------EecChhhhhhcCCCC---CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 156 -----L---------FNMCHSRMEEIVPKS---TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 156 -----~---------~~~~~~~l~~~~~~~---~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
. .-.+++|+.+..... +.+|+|+.++ ++....+..++++.+..+|||||+.+
T Consensus 225 ~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf---------FIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 225 IPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF---------FIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred CccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE---------EeechHHHHHHHHHHHHhccCCcEEE
Confidence 0 000112222222222 2567776662 44456777899999999999999875
No 297
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=96.19 E-value=0.31 Score=45.91 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=76.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-CCCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI-VPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~~~~~ 172 (267)
++..|.|..||+|.+.....+.++..-....++|-+....+...|+.++.-++.. ........++ .+... .....
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~--~~t~~~~~~d--tl~~~d~~~~~ 292 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID--YANFNIINAD--TLTTKEWENEN 292 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC--ccccCcccCC--cCCCccccccc
Confidence 5679999999999998776554321001256999999999999999987654410 1112221221 12211 11234
Q ss_pred cEEEEEEeCCCCCCCCC-----------cee-e----chhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 173 AVRLVAFNLGYLPGGDK-----------SVI-T----TSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~-----------~~~-~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.+|.++.|+++-.++.. .+. | ....-..++..+...|++||...++...+
T Consensus 293 ~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g 358 (501)
T TIGR00497 293 GFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG 358 (501)
T ss_pred cCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence 68999999876332211 111 1 11233578888899999999987776644
No 298
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=96.07 E-value=0.08 Score=46.91 Aligned_cols=94 Identities=10% Similarity=-0.048 Sum_probs=60.0
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
..+++|++||=.|+|. |..+..+|+..+ ++|++++.+++..+.+++ .| ... ++.. .+ .
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G-----~~vi~~~~~~~~~~~a~~----~G----a~~--vi~~--~~---~- 219 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQG-----ATVHVMTRGAAARRLALA----LG----AAS--AGGA--YD---T- 219 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCC-----CeEEEEeCChHHHHHHHH----hC----Cce--eccc--cc---c-
Confidence 3567899999999875 666777888763 579999999988777765 22 111 1110 00 0
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....+|+++..-+ ....+....+.|++||++++...
T Consensus 220 -~~~~~d~~i~~~~---------------~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 220 -PPEPLDAAILFAP---------------AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -CcccceEEEECCC---------------cHHHHHHHHHhhCCCcEEEEEec
Confidence 0113555443211 02478888999999999987654
No 299
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.023 Score=50.16 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=65.2
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-hhhhhcCCCCCc
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEEIVPKSTA 173 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~~~~~ 173 (267)
..++||+|.|+|.-...+-...+. -..++-++.|+..-+..- .+.++- ..........+. .+...+. ....
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pd---l~sa~ile~sp~lrkV~~-tl~~nv---~t~~td~r~s~vt~dRl~lp-~ad~ 185 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPD---LKSAVILEASPALRKVGD-TLAENV---STEKTDWRASDVTEDRLSLP-AADL 185 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCC---chhhhhhccCHHHHHHHH-HHHhhc---ccccCCCCCCccchhccCCC-ccce
Confidence 357999999999877766665543 245777888875433332 222211 001100011111 1222222 2235
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHH
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEA 232 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 232 (267)
+++++..-..+|... .......++.+..++.|||.++|+.. |.+.|.+....
T Consensus 186 ytl~i~~~eLl~d~~------ek~i~~~ie~lw~l~~~gg~lVivEr-Gtp~Gf~~I~r 237 (484)
T COG5459 186 YTLAIVLDELLPDGN------EKPIQVNIERLWNLLAPGGHLVIVER-GTPAGFERILR 237 (484)
T ss_pred eehhhhhhhhccccC------cchHHHHHHHHHHhccCCCeEEEEeC-CCchhHHHHHH
Confidence 666655422233221 12234588999999999999988765 45556554333
No 300
>PLN02740 Alcohol dehydrogenase-like
Probab=95.95 E-value=0.11 Score=46.92 Aligned_cols=101 Identities=19% Similarity=0.152 Sum_probs=65.8
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----h-h
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-----H-S 162 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-----~-~ 162 (267)
..+++|++||=+|+|. |..+..+|+..|. .+|+++|.+++.++.+++ .+ .. .++... . .
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~----~~Vi~~~~~~~r~~~a~~----~G----a~--~~i~~~~~~~~~~~ 259 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGA----SKIIGVDINPEKFEKGKE----MG----IT--DFINPKDSDKPVHE 259 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC----CcEEEEcCChHHHHHHHH----cC----Cc--EEEecccccchHHH
Confidence 3567899999999987 7788888887642 379999999998888865 22 11 122111 1 1
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEec
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVYV 221 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~ 221 (267)
.+..... . .+|+++-..+. ...+..+.+.+++| |++++....
T Consensus 260 ~v~~~~~-~-g~dvvid~~G~---------------~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 260 RIREMTG-G-GVDYSFECAGN---------------VEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred HHHHHhC-C-CCCEEEECCCC---------------hHHHHHHHHhhhcCCCEEEEEccC
Confidence 1222221 2 57888776432 35778888889997 988776543
No 301
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.94 E-value=0.11 Score=45.58 Aligned_cols=100 Identities=22% Similarity=0.329 Sum_probs=64.3
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh--c
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE--I 167 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~--~ 167 (267)
.++++.+||..|+|. |..+..+|+..+ .+|++++.+++..+.+++. + ... ++......... .
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G-----~~V~~~~~s~~~~~~~~~~----g----~~~--~~~~~~~~~~~~~~ 226 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG-----AAVIAVDIKEEKLELAKEL----G----ADE--VLNSLDDSPKDKKA 226 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-----CEEEEEcCCHHHHHHHHHh----C----CCE--EEcCCCcCHHHHHH
Confidence 367888999988874 888888888864 5799999999888777541 2 111 11111111111 1
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
......+|+++...+. ...++++.+.|+++|.++....
T Consensus 227 ~~~~~~~D~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 227 AGLGGGFDVIFDFVGT---------------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred HhcCCCceEEEECCCC---------------HHHHHHHHHHhhcCCEEEEECC
Confidence 1123368888765321 3578889999999999976543
No 302
>PRK13699 putative methylase; Provisional
Probab=95.93 E-value=0.045 Score=46.00 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=40.0
Q ss_pred EEEecChhhhhhcCCCCCcEEEEEEeCCCCCC-C---CCceee--chhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 155 KLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPG-G---DKSVIT--TSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~-~---d~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+++++|.-++...++ +.++|+|+.++||.-. . ...... ..+-...++++++|+|||||.+++..
T Consensus 3 ~l~~gD~le~l~~lp-d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 3 RFILGNCIDVMARFP-DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred eEEechHHHHHHhCC-ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 456666655544443 4589999999999421 1 100000 11224678899999999999887643
No 303
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=95.89 E-value=0.093 Score=46.30 Aligned_cols=104 Identities=20% Similarity=0.207 Sum_probs=70.6
Q ss_pred HhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh-hhh
Q 041272 88 WKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS-RME 165 (267)
Q Consensus 88 ~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~-~l~ 165 (267)
-...+++|++|.=+|||. |..++.-|+..+. .++++||++++.+++|++ +.-.++++.... ++.
T Consensus 179 nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA----~~IiAvD~~~~Kl~~A~~----------fGAT~~vn~~~~~~vv 244 (366)
T COG1062 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGA----GRIIAVDINPEKLELAKK----------FGATHFVNPKEVDDVV 244 (366)
T ss_pred hcccCCCCCeEEEEeccHhHHHHHHHHHHcCC----ceEEEEeCCHHHHHHHHh----------cCCceeecchhhhhHH
Confidence 334578999999999998 8888888888764 899999999999999987 333444433211 121
Q ss_pred ----hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 166 ----EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 166 ----~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
+... .-.|.++-..+. .+.+++++..+.++|..+++-...
T Consensus 245 ~~i~~~T~--gG~d~~~e~~G~---------------~~~~~~al~~~~~~G~~v~iGv~~ 288 (366)
T COG1062 245 EAIVELTD--GGADYAFECVGN---------------VEVMRQALEATHRGGTSVIIGVAG 288 (366)
T ss_pred HHHHHhcC--CCCCEEEEccCC---------------HHHHHHHHHHHhcCCeEEEEecCC
Confidence 1211 124444333211 368888899999999998876643
No 304
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.83 E-value=0.091 Score=46.05 Aligned_cols=89 Identities=12% Similarity=0.080 Sum_probs=59.7
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
.++++||=+|||. |.++..+|+..|. ..|+++|.+++.++.|++. . ++. ..+ . ..
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~----~~v~~~~~~~~rl~~a~~~----~---------~i~--~~~--~---~~ 198 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGG----SPPAVWETNPRRRDGATGY----E---------VLD--PEK--D---PR 198 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCC----ceEEEeCCCHHHHHhhhhc----c---------ccC--hhh--c---cC
Confidence 3577899999987 8888888988653 4577889988777665431 1 111 000 0 12
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+|+++-..+. ...++.+.+.|++||++++...
T Consensus 199 ~g~Dvvid~~G~---------------~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 199 RDYRAIYDASGD---------------PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred CCCCEEEECCCC---------------HHHHHHHHHhhhcCcEEEEEee
Confidence 247777766432 3567888999999999987654
No 305
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=95.70 E-value=0.17 Score=45.06 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=37.9
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
..++++.+||=.|+|. |..+..+|+..+ .+|+++|.+++.++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G-----~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG-----AAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-----CeEEEEcCCHHHHHHHHH
Confidence 3467899999999977 888888888764 589999999998888765
No 306
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=95.69 E-value=0.18 Score=44.57 Aligned_cols=101 Identities=22% Similarity=0.223 Sum_probs=63.5
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC---hhhhh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC---HSRME 165 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~---~~~l~ 165 (267)
..+.++++||=+|+|. |..+..+|+..+. .+|+++|.+++..+.+++. + .. .++... ...+.
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~----~~vi~~~~~~~~~~~~~~~----g----a~--~~i~~~~~~~~~~~ 224 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGA----EDVIGVDPSPERLELAKAL----G----AD--FVINSGQDDVQEIR 224 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHHh----C----CC--EEEcCCcchHHHHH
Confidence 3467899999999876 7777778887643 3499999999887777542 2 01 111111 11222
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.. ....+|+++-..+. ...+..+.+.|+++|.+++...
T Consensus 225 ~~~-~~~~~d~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 225 ELT-SGAGADVAIECSGN---------------TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred HHh-CCCCCCEEEECCCC---------------HHHHHHHHHHhhcCCEEEEEcC
Confidence 222 12257888765321 3466778899999999987554
No 307
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.19 Score=44.80 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=41.8
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCC----CcEEEEEeCChHHHHHHHHHHhhc
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESS----AGCVYGLDIQSEALKSTSSLLDKT 145 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p----~~~v~giD~s~~~i~~a~~~~~~~ 145 (267)
+..-.++|+|.|+|.++.-+.+....-+| ..+++-||.|++..+.=+++++..
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 34458999999999999888876533233 478999999999988888887764
No 308
>PLN02827 Alcohol dehydrogenase-like
Probab=95.68 E-value=0.13 Score=46.50 Aligned_cols=99 Identities=18% Similarity=0.150 Sum_probs=63.7
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----h-hh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-----H-SR 163 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-----~-~~ 163 (267)
.++++++||-.|+|+ |..+..+|+..|. ..|+++|.+++..+.|++ .+ .. .++... . ..
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~----~~vi~~~~~~~~~~~a~~----lG----a~--~~i~~~~~~~~~~~~ 255 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGA----SQIIGVDINPEKAEKAKT----FG----VT--DFINPNDLSEPIQQV 255 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEECCCHHHHHHHHH----cC----Cc--EEEcccccchHHHHH
Confidence 467899999999877 7777888887642 469999999988777754 22 11 111111 1 11
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEe
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVY 220 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 220 (267)
+.+... . .+|+++-..+. ...+..+.+.|++| |++++...
T Consensus 256 v~~~~~-~-g~d~vid~~G~---------------~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 256 IKRMTG-G-GADYSFECVGD---------------TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred HHHHhC-C-CCCEEEECCCC---------------hHHHHHHHHhhccCCCEEEEECC
Confidence 222222 2 47888766432 24678888999999 99976543
No 309
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=95.65 E-value=0.16 Score=45.04 Aligned_cols=100 Identities=20% Similarity=0.220 Sum_probs=62.6
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec---Chhhhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM---CHSRMEE 166 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~---~~~~l~~ 166 (267)
.++++++||=.|+|+ |..+..+|+..+. ..|+++|.+++..+.+++ .+ .. .++.. +...+..
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~----~~v~~~~~~~~~~~~~~~----~G----a~--~~i~~~~~~~~~~~~ 222 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGA----KSVTAIDINSEKLALAKS----LG----AM--QTFNSREMSAPQIQS 222 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEECCCHHHHHHHHH----cC----Cc--eEecCcccCHHHHHH
Confidence 456788999999877 7778888888642 348999999988777654 12 01 11111 1112222
Q ss_pred cCCCCCcEE-EEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 167 IVPKSTAVR-LVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 167 ~~~~~~~~d-~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
... ...+| +++-..+. ...+.++.+.|++||.+++...
T Consensus 223 ~~~-~~~~d~~v~d~~G~---------------~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 223 VLR-ELRFDQLILETAGV---------------PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred Hhc-CCCCCeEEEECCCC---------------HHHHHHHHHHhhcCCEEEEEcc
Confidence 222 22466 44444221 3578889999999999987654
No 310
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.61 E-value=0.12 Score=50.47 Aligned_cols=113 Identities=11% Similarity=0.160 Sum_probs=64.4
Q ss_pred CEEEEecCCCChHHHHHHHhcC---CCCC-----CcEEEEEeCCh---HHHHHHH-----------HHHhh-----cccc
Q 041272 96 DTVVDATCGNGYDTLMMLKMVA---DESS-----AGCVYGLDIQS---EALKSTS-----------SLLDK-----TTSK 148 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~---~~~p-----~~~v~giD~s~---~~i~~a~-----------~~~~~-----~~~~ 148 (267)
-+|+|+|-|+|...+...+... +..| ..+++++|..| +.+..+. +..+. .+..
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 5899999999998777665441 0011 25899999754 2232222 21111 0100
Q ss_pred ---cccc--ceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 149 ---AEKG--LVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 149 ---~~~~--~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
.... ++++..+|..+....+. ..+|+++.|. +-|....... ..++++++.++++|||.+.
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~--~~~d~~~lD~-FsP~~np~~W-----~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLD--ARADAWFLDG-FAPAKNPDMW-----SPNLFNALARLARPGATLA 203 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhcc--ccccEEEeCC-CCCccChhhc-----cHHHHHHHHHHhCCCCEEE
Confidence 0011 34456667665444332 3589999983 2222111111 1689999999999999995
No 311
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=95.57 E-value=0.15 Score=44.90 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=61.0
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
++.+||-.|||. |..+..+|+..|. .+|++++.+++..+.+++. + .. .++.....++........
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~----~~v~~~~~s~~~~~~~~~~----g----~~--~vi~~~~~~~~~~~~~~~ 230 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA----AEIVATDLADAPLAVARAM----G----AD--ETVNLARDPLAAYAADKG 230 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC----cEEEEECCCHHHHHHHHHc----C----CC--EEEcCCchhhhhhhccCC
Confidence 788999999876 7777888887642 3799999998887766542 1 01 122111111222221222
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+|+++...+. ...++++.+.|+++|+++...
T Consensus 231 ~vd~vld~~g~---------------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 231 DFDVVFEASGA---------------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CccEEEECCCC---------------HHHHHHHHHHHhcCCEEEEEe
Confidence 47888765321 246788899999999997654
No 312
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.55 E-value=0.05 Score=45.35 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=54.0
Q ss_pred CCCEEEEecCCCChHHHHHH-HhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe-cChhhhh-hcCCC
Q 041272 94 KGDTVVDATCGNGYDTLMML-KMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN-MCHSRME-EIVPK 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la-~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~~~~~l~-~~~~~ 170 (267)
++.++||||.|---+=-.+- ..+ +.+.+|.|+++.+++.|+.++..|. .+...+++.. .+...+. .....
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-----gwrfvGseid~~sl~sA~~ii~~N~--~l~~~I~lr~qk~~~~if~giig~ 150 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-----GWRFVGSEIDSQSLSSAKAIISANP--GLERAIRLRRQKDSDAIFNGIIGK 150 (292)
T ss_pred CceEEEeeccCcccccccccceee-----cceeecCccCHHHHHHHHHHHHcCc--chhhheeEEeccCccccccccccc
Confidence 56689999988632221111 222 4689999999999999999998872 1445566543 2222222 23344
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
+..||++++|+++
T Consensus 151 nE~yd~tlCNPPF 163 (292)
T COG3129 151 NERYDATLCNPPF 163 (292)
T ss_pred cceeeeEecCCCc
Confidence 5689999999755
No 313
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=95.44 E-value=0.23 Score=44.36 Aligned_cols=98 Identities=21% Similarity=0.197 Sum_probs=64.3
Q ss_pred hcCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec----Ch-hh
Q 041272 91 VVRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM----CH-SR 163 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~----~~-~~ 163 (267)
.+++|++||=.|+ | .|..+..+|+..| .+|++++.+++..+.+++.+.. . .++.. +. ..
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G-----~~Vi~~~~~~~k~~~~~~~lGa-------~--~vi~~~~~~~~~~~ 220 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHG-----CYVVGSAGSSQKVDLLKNKLGF-------D--EAFNYKEEPDLDAA 220 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC-----CEEEEEcCCHHHHHHHHHhcCC-------C--EEEECCCcccHHHH
Confidence 4678999999998 4 4888899998874 6899999998877776533221 1 11111 11 11
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+..... ..+|+++-..+ ...+..+.+.|++||++++...
T Consensus 221 i~~~~~--~gvD~v~d~vG----------------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 221 LKRYFP--EGIDIYFDNVG----------------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred HHHHCC--CCcEEEEECCC----------------HHHHHHHHHHhccCCEEEEECc
Confidence 222222 25788876532 1467888999999999986543
No 314
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.36 E-value=0.11 Score=48.01 Aligned_cols=143 Identities=18% Similarity=0.227 Sum_probs=77.5
Q ss_pred cCCCC--EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 92 VRKGD--TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~--~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
+..+. .|+|...|.|.+++.|.+. .|..+-+.+..-...-..+-+.| +.+ ..++=.+.+..+
T Consensus 361 i~~~~iRNVMDMnAg~GGFAAAL~~~--------~VWVMNVVP~~~~ntL~vIydRG---LIG---~yhDWCE~fsTY-- 424 (506)
T PF03141_consen 361 IKWGRIRNVMDMNAGYGGFAAALIDD--------PVWVMNVVPVSGPNTLPVIYDRG---LIG---VYHDWCEAFSTY-- 424 (506)
T ss_pred ccccceeeeeeecccccHHHHHhccC--------CceEEEecccCCCCcchhhhhcc---cch---hccchhhccCCC--
Confidence 44443 7999999999999999865 24444433331111111111222 111 111111122222
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICCK 249 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (267)
..++|++-.+--+ +.....-....++-++=|+|+|||.++|-+. ..-...+++.++.+. |....
T Consensus 425 -PRTYDLlHA~~lf------s~~~~rC~~~~illEmDRILRP~G~~iiRD~------~~vl~~v~~i~~~lr---W~~~~ 488 (506)
T PF03141_consen 425 -PRTYDLLHADGLF------SLYKDRCEMEDILLEMDRILRPGGWVIIRDT------VDVLEKVKKIAKSLR---WEVRI 488 (506)
T ss_pred -Ccchhheehhhhh------hhhcccccHHHHHHHhHhhcCCCceEEEecc------HHHHHHHHHHHHhCc---ceEEE
Confidence 2368888766211 0011223457889999999999999988664 223455666666654 66655
Q ss_pred EeeecCC-CCceEEEeec
Q 041272 250 FQMLNRP-LAPVLVFLFK 266 (267)
Q Consensus 250 ~~~~~~~-~~p~~~~~~k 266 (267)
+...+.+ ....+++.+|
T Consensus 489 ~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 489 HDTEDGPDGPEKILICQK 506 (506)
T ss_pred EecCCCCCCCceEEEEEC
Confidence 5555543 3556666655
No 315
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.35 E-value=0.26 Score=43.11 Aligned_cols=104 Identities=19% Similarity=0.203 Sum_probs=70.1
Q ss_pred HHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----
Q 041272 87 VWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC----- 160 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~----- 160 (267)
+....+++|++|.-+|+|. |.....-|+..|. .+++|||++++-.+.|++- .--++++-.
T Consensus 185 ~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GA----srIIgvDiN~~Kf~~ak~f----------GaTe~iNp~d~~~~ 250 (375)
T KOG0022|consen 185 WNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGA----SRIIGVDINPDKFEKAKEF----------GATEFINPKDLKKP 250 (375)
T ss_pred hhhcccCCCCEEEEEecchHHHHHHHhHHhcCc----ccEEEEecCHHHHHHHHhc----------CcceecChhhcccc
Confidence 3344678999999999998 7666777777664 8999999999999998873 223333211
Q ss_pred -hhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEec
Q 041272 161 -HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVYV 221 (267)
Q Consensus 161 -~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~ 221 (267)
.+-+.+.. +..+|+.+-..+. .+.+++++...+.| |.-+++-..
T Consensus 251 i~evi~EmT--dgGvDysfEc~G~---------------~~~m~~al~s~h~GwG~sv~iGv~ 296 (375)
T KOG0022|consen 251 IQEVIIEMT--DGGVDYSFECIGN---------------VSTMRAALESCHKGWGKSVVIGVA 296 (375)
T ss_pred HHHHHHHHh--cCCceEEEEecCC---------------HHHHHHHHHHhhcCCCeEEEEEec
Confidence 11122222 3457776655433 47888888888888 887776543
No 316
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.30 E-value=0.12 Score=43.11 Aligned_cols=125 Identities=17% Similarity=0.134 Sum_probs=74.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCC-C----cEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh----
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESS-A----GCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM---- 164 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p-~----~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l---- 164 (267)
.-.+|+|+...+|.++..|++++-.+-+ . .++++||+.+-+ ....|.-+++|....
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma---------------PI~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA---------------PIEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC---------------ccCceEEeecccCCHhHHH
Confidence 3468999999999999999987643111 1 139999987632 122333344433322
Q ss_pred --hhcCCCCCcEEEEEEeCCCCCCCCCceeechhh------HHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHH
Q 041272 165 --EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSET------TKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAF 236 (267)
Q Consensus 165 --~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 236 (267)
.+.+. +.+.|+|+++= .+|-.-+|..+. ...+|.-...+|||||.|+--.+.+...+ .-...+..|
T Consensus 106 ~Ii~hfg-gekAdlVvcDG----APDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~ts-lLysql~~f 179 (294)
T KOG1099|consen 106 AIIEHFG-GEKADLVVCDG----APDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTS-LLYSQLRKF 179 (294)
T ss_pred HHHHHhC-CCCccEEEeCC----CCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchH-HHHHHHHHH
Confidence 22222 34789999982 122222343322 35566777889999999987777554422 234455566
Q ss_pred HHh
Q 041272 237 ARS 239 (267)
Q Consensus 237 ~~~ 239 (267)
+..
T Consensus 180 f~k 182 (294)
T KOG1099|consen 180 FKK 182 (294)
T ss_pred hhc
Confidence 553
No 317
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.20 E-value=0.015 Score=42.46 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=26.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ 131 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s 131 (267)
+....+|||||+|.+.-.|.+. +-.-+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E------Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE------GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC------CCCccccccc
Confidence 4568999999999999888876 4677899963
No 318
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.10 E-value=0.1 Score=45.80 Aligned_cols=132 Identities=12% Similarity=-0.017 Sum_probs=69.6
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEE
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL 176 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ 176 (267)
+++|+.||-|.++..+.+.- -..|.++|+++.+++.-+.|.. ....+|..++.....+. ++|+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-----~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~-~~D~ 64 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-----FEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPK-DVDL 64 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-----EEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHH-T-SE
T ss_pred cEEEEccCccHHHHHHHhcC-----cEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccc-cceE
Confidence 79999999999999988762 2467899999998888877653 33444444333221111 4899
Q ss_pred EEEeCCCCCCCCCceee---ch-h-hHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceEEE
Q 041272 177 VAFNLGYLPGGDKSVIT---TS-E-TTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWICC 248 (267)
Q Consensus 177 ii~~~~~lp~~d~~~~~---~~-~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (267)
++..++.=+++...... .. . -..+++ ++.+.++|.-+++ .....-........+..+.+.+..-+|.+.
T Consensus 65 l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~-~~v~~~~Pk~~~~--ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~ 138 (335)
T PF00145_consen 65 LIGGPPCQGFSIAGKRKGFDDPRNSLFFEFL-RIVKELKPKYFLL--ENVPGLLSSKNGEVFKEILEELEELGYNVQ 138 (335)
T ss_dssp EEEE---TTTSTTSTHHCCCCHTTSHHHHHH-HHHHHHS-SEEEE--EEEGGGGTGGGHHHHHHHHHHHHHTTEEEE
T ss_pred EEeccCCceEeccccccccccccchhhHHHH-HHHhhccceEEEe--cccceeeccccccccccccccccccceeeh
Confidence 99998764443222111 11 1 122333 3445568865443 332222122222444555555555567653
No 319
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=95.08 E-value=0.093 Score=45.79 Aligned_cols=98 Identities=8% Similarity=0.081 Sum_probs=58.2
Q ss_pred HHHHhhHHHhhhcCCCCEE---EEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEE
Q 041272 80 ITIAANGVWKHVVRKGDTV---VDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL 156 (267)
Q Consensus 80 ~~~~~~~l~~~~l~~~~~V---LDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~ 156 (267)
-..+.+.++...-....++ +|||+|.-.+--.+-.+. -+...+++|++...+..|+.|..+++ +...+.+
T Consensus 85 YihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq----~n~~f~~teidd~s~~~a~snV~qn~---lss~ikv 157 (419)
T KOG2912|consen 85 YIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQ----NNWYFLATEIDDMSFNYAKSNVEQNN---LSSLIKV 157 (419)
T ss_pred hHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchh----ccceeeeeeccccccchhhccccccc---cccceee
Confidence 3445566655442222333 688877643322222221 13678999999999999999999988 4566666
Q ss_pred EecCh-h-hhhhcC--CCCCcEEEEEEeCCCC
Q 041272 157 FNMCH-S-RMEEIV--PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 157 ~~~~~-~-~l~~~~--~~~~~~d~ii~~~~~l 184 (267)
++-.. . .+.+.. ..+..||++++|+++.
T Consensus 158 V~~~~~ktll~d~~~~~~e~~ydFcMcNPPFf 189 (419)
T KOG2912|consen 158 VKVEPQKTLLMDALKEESEIIYDFCMCNPPFF 189 (419)
T ss_pred EEecchhhcchhhhccCccceeeEEecCCchh
Confidence 55321 1 111211 1134699999998763
No 320
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=95.06 E-value=0.58 Score=41.04 Aligned_cols=98 Identities=16% Similarity=0.042 Sum_probs=62.7
Q ss_pred hhcCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC----hhh
Q 041272 90 HVVRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC----HSR 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~----~~~ 163 (267)
..+++|++||=.|. | .|..+..+|+..| .+|++++.+++..+.+++ .+ ... ++... ...
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G-----~~Vi~~~~s~~~~~~~~~----lG----a~~--vi~~~~~~~~~~ 198 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKG-----CKVVGAAGSDEKVAYLKK----LG----FDV--AFNYKTVKSLEE 198 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHH----cC----CCE--EEeccccccHHH
Confidence 34678999998884 3 4888888998864 689999999888777754 22 111 11111 111
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...... ...+|+++-..+- ..+..+.+.|++||+++...
T Consensus 199 ~~~~~~-~~gvdvv~d~~G~----------------~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 199 TLKKAS-PDGYDCYFDNVGG----------------EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred HHHHhC-CCCeEEEEECCCH----------------HHHHHHHHHhCcCcEEEEec
Confidence 111111 2358888765321 45688899999999998653
No 321
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.01 E-value=0.37 Score=42.82 Aligned_cols=101 Identities=20% Similarity=0.280 Sum_probs=64.3
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRM 164 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l 164 (267)
..++++.+||-.|+|. |..+..+|+..|. ..|+++|.+++..+.+++ .+ .. .++.... ..+
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~----~~v~~~~~~~~~~~~~~~----~g----~~--~~v~~~~~~~~~~i 227 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGA----GRIIAVGSRPNRVELAKE----YG----AT--DIVDYKNGDVVEQI 227 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEeCCHHHHHHHHH----cC----Cc--eEecCCCCCHHHHH
Confidence 3467889999998875 7777888888653 479999999988777765 22 11 1111111 112
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.... ....+|+++...+. ...+..+.+.|+++|+++....
T Consensus 228 ~~~~-~~~~~d~vld~~g~---------------~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 228 LKLT-GGKGVDAVIIAGGG---------------QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred HHHh-CCCCCcEEEECCCC---------------HHHHHHHHHHhhcCCEEEEecc
Confidence 2222 22357877765321 2577889999999999876543
No 322
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=95.00 E-value=0.33 Score=44.20 Aligned_cols=116 Identities=17% Similarity=0.142 Sum_probs=68.4
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec---Ch-hhh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM---CH-SRM 164 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~---~~-~~l 164 (267)
..+.++++||=.|+|. |..+..+|+..+. ..|+.+|.+++.++.|++. + . . .+... +. ..+
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga----~~vi~~d~~~~r~~~a~~~----G----a-~-~v~~~~~~~~~~~v 246 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGA----AVVIVGDLNPARLAQARSF----G----C-E-TVDLSKDATLPEQI 246 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----ceEEEeCCCHHHHHHHHHc----C----C-e-EEecCCcccHHHHH
Confidence 3467888888888887 7777888888653 4567788988888887762 2 1 1 11111 11 122
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.+... ...+|+++-..+.-.. +....-........++++.+.+++||.++++..+
T Consensus 247 ~~~~~-~~g~Dvvid~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 247 EQILG-EPEVDCAVDCVGFEAR-GHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred HHHcC-CCCCcEEEECCCCccc-cccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 22222 2357888876543110 0000000012235789999999999999887664
No 323
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.97 E-value=0.093 Score=48.33 Aligned_cols=119 Identities=12% Similarity=0.147 Sum_probs=79.5
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEE-EecChhhhhh---cC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL-FNMCHSRMEE---IV 168 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~-~~~~~~~l~~---~~ 168 (267)
.-+.++|-+|-|.|.+...+-..++ ...+++|+++|+|++.|+++..-.. ..+..+ +.+....+.. .-
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p----~~~i~~ve~dP~~l~va~q~f~f~q----~~r~~V~i~dGl~~~~~~~k~~ 365 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLP----KFQITAVEIDPEMLEVATQYFGFMQ----SDRNKVHIADGLDFLQRTAKSQ 365 (482)
T ss_pred cccCcEEEEecCCCccccceeeecC----ccceeEEEEChhHhhccHhhhchhh----hhhhhhhHhhchHHHHHHhhcc
Confidence 3456899999999999988887765 4899999999999999999876543 112222 2222223333 22
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechh---hHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSE---TTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.++..+|+++.+. ...|..-...++ -...++..+...|.|.|.+.+.....
T Consensus 366 ~~~~~~dvl~~dv---ds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 366 QEDICPDVLMVDV---DSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred ccccCCcEEEEEC---CCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 3556799999984 222211112222 13678889999999999998876543
No 324
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.94 E-value=0.21 Score=42.00 Aligned_cols=100 Identities=23% Similarity=0.234 Sum_probs=62.0
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-hhhhhcCC
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~ 169 (267)
+.++.+||..|+|+ |..+..+++.. +.+|++++.+++..+.+++.-.. .-+.....+. ..+. ..
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~-----g~~v~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~--~~ 197 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAA-----GARVIVTDRSDEKLELAKELGAD-------HVIDYKEEDLEEELR--LT 197 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-----CCeEEEEcCCHHHHHHHHHhCCc-------eeccCCcCCHHHHHH--Hh
Confidence 36789999999996 77777778775 36899999998877776542110 0011000000 1111 11
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....+|+++.+.+. ...+..+.+.|+++|.++....
T Consensus 198 ~~~~~d~vi~~~~~---------------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 198 GGGGADVVIDAVGG---------------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred cCCCCCEEEECCCC---------------HHHHHHHHHhcccCCEEEEEcc
Confidence 22358888876321 1467778889999999976554
No 325
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=94.93 E-value=1.6 Score=35.60 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=83.1
Q ss_pred CCEEEEecCCCChHHHHHHHh---cCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-----
Q 041272 95 GDTVVDATCGNGYDTLMMLKM---VADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE----- 166 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~---~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~----- 166 (267)
...|+|+|.-.|..++..|.. .|+ ..+|+++|++-..++-+... .+++.|+.++..+..-
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq---~~kvl~vdIdi~~~~p~a~e---------~p~i~f~egss~dpai~eqi~ 137 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQ---PFKVLGVDIDIKPLDPAARE---------VPDILFIEGSSTDPAIAEQIR 137 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCC---CceEEEEecccCcCChhhhc---------CCCeEEEeCCCCCHHHHHHHH
Confidence 358999999999888777753 343 37999999997665544331 3678888876654422
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec--CCC-------CChhhHHHHHHHH
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV--GHP-------GGREELEAVEAFA 237 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~--~~~-------~~~~~~~~~~~~~ 237 (267)
......+--+++.+ ..|+.+...+.++-..++|.-|-++++.+-. +++ -+....++++.|+
T Consensus 138 ~~~~~y~kIfvilD----------sdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~yl 207 (237)
T COG3510 138 RLKNEYPKIFVILD----------SDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYL 207 (237)
T ss_pred HHhcCCCcEEEEec----------CCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHH
Confidence 12222344455655 3555666678888888999999999875431 122 1223467889999
Q ss_pred HhCCC
Q 041272 238 RSLSV 242 (267)
Q Consensus 238 ~~l~~ 242 (267)
+..++
T Consensus 208 r~~p~ 212 (237)
T COG3510 208 REFPQ 212 (237)
T ss_pred HhCCc
Confidence 88774
No 326
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.90 E-value=0.53 Score=41.60 Aligned_cols=71 Identities=14% Similarity=0.021 Sum_probs=47.1
Q ss_pred EEEecCCCChHHHHHHHhcCCCCCCcE-EEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcEEE
Q 041272 98 VVDATCGNGYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAVRL 176 (267)
Q Consensus 98 VLDlGcG~G~~~~~la~~~~~~~p~~~-v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~d~ 176 (267)
|+|+.||.|.++.-+.+. +.+ +.++|+++.+++.-+.|... .++.+|..++..... .++|+
T Consensus 1 vidLF~G~GG~~~Gl~~a------G~~~~~a~e~~~~a~~ty~~N~~~----------~~~~~Di~~~~~~~~--~~~dv 62 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA------GFKCVFASEIDKYAQKTYEANFGN----------KVPFGDITKISPSDI--PDFDI 62 (315)
T ss_pred CEEEecCccHHHHHHHHc------CCeEEEEEeCCHHHHHHHHHhCCC----------CCCccChhhhhhhhC--CCcCE
Confidence 689999999999888765 344 56899999998888776532 223344444332111 25899
Q ss_pred EEEeCCCCCC
Q 041272 177 VAFNLGYLPG 186 (267)
Q Consensus 177 ii~~~~~lp~ 186 (267)
++..++.=++
T Consensus 63 l~gg~PCq~f 72 (315)
T TIGR00675 63 LLGGFPCQPF 72 (315)
T ss_pred EEecCCCccc
Confidence 9988765333
No 327
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.83 Score=38.69 Aligned_cols=115 Identities=19% Similarity=0.197 Sum_probs=70.8
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEE--EecChhhhhhcCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKL--FNMCHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~ 169 (267)
+..+...+|+|+|+..-+..|...+.+...-.+++.||+|...++...+.+.... ..+++ +.++..--...++
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y-----~~l~v~~l~~~~~~~La~~~ 150 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY-----PGLEVNALCGDYELALAELP 150 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC-----CCCeEeehhhhHHHHHhccc
Confidence 3457799999999999998888766432223689999999998876665554432 33443 3333332222222
Q ss_pred CCCcEEEEEEeCCCCCCCCCcee-echhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVI-TTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
. +.--+++ -++. ++- ..+.....++.++...|+||-.+++-+
T Consensus 151 ~-~~~Rl~~-flGS------tlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 151 R-GGRRLFV-FLGS------TLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred C-CCeEEEE-Eecc------cccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 2 2222221 1111 111 135666789999999999999988744
No 328
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.80 E-value=0.033 Score=50.29 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=57.7
Q ss_pred hHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccccccc-ceEEEecChhh
Q 041272 85 NGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKG-LVKLFNMCHSR 163 (267)
Q Consensus 85 ~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~-~v~~~~~~~~~ 163 (267)
|+-+....++|..|-|+.||.|-+++.+++. ++.|++-|.+++++++-+.|++.+. ..+ +++.+..++.+
T Consensus 240 herlsg~fk~gevv~D~FaGvGPfa~Pa~kK------~crV~aNDLNpesik~Lk~ni~lNk---v~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 240 HERLSGLFKPGEVVCDVFAGVGPFALPAAKK------GCRVYANDLNPESIKWLKANIKLNK---VDPSAIEIFNMDAKD 310 (495)
T ss_pred HHHHhhccCCcchhhhhhcCcCccccchhhc------CcEEEecCCCHHHHHHHHHhccccc---cchhheeeecccHHH
Confidence 3333346789999999999999999999987 5899999999999999999998876 333 37777666654
Q ss_pred hh
Q 041272 164 ME 165 (267)
Q Consensus 164 l~ 165 (267)
..
T Consensus 311 Fl 312 (495)
T KOG2078|consen 311 FL 312 (495)
T ss_pred Hh
Confidence 43
No 329
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=94.77 E-value=0.21 Score=44.96 Aligned_cols=103 Identities=19% Similarity=0.180 Sum_probs=64.3
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe--cCh-hhhh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN--MCH-SRME 165 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~--~~~-~~l~ 165 (267)
..++++++||=.|+|. |..+..+|+..+. .+|+++|.+++..+.+++. +. ..-+.... .+. ..+.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~----~~Vi~~~~~~~~~~~a~~~----Ga---~~~i~~~~~~~~~~~~v~ 249 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKA----SRIIAIDINPAKFELAKKL----GA---TDCVNPNDYDKPIQEVIV 249 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHHHHh----CC---CeEEcccccchhHHHHHH
Confidence 3467899999999877 7788888888642 3799999999988888652 20 00011000 000 1122
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEe
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVY 220 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 220 (267)
+... . .+|+++-..+. ...+.++.+.+++| |++++...
T Consensus 250 ~~~~-~-g~d~vid~~G~---------------~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 250 EITD-G-GVDYSFECIGN---------------VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred HHhC-C-CCCEEEECCCC---------------HHHHHHHHHHhhcCCCeEEEEec
Confidence 2221 2 47777765321 25678888899886 98877654
No 330
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.72 E-value=0.2 Score=45.94 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=59.6
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
-+|++|+=+|+|. |.....+++..| ++|+.+|.++...+.|++ .| +..+. . .+..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G-----a~ViV~d~d~~R~~~A~~----~G-------~~~~~--~---~e~v--- 255 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG-----ARVIVTEVDPICALQAAM----EG-------YEVMT--M---EEAV--- 255 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-----CEEEEEECChhhHHHHHh----cC-------CEEcc--H---HHHH---
Confidence 4789999999998 777777777764 589999999988777765 22 11111 1 1111
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHHHH-HhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALEAA-ERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~-~~~LkpgG~l~i~~~ 220 (267)
...|+++...+. ..++... .+.+|+||+++.+..
T Consensus 256 ~~aDVVI~atG~---------------~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 256 KEGDIFVTTTGN---------------KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred cCCCEEEECCCC---------------HHHHHHHHHhcCCCCcEEEEeCC
Confidence 135777765321 3456554 889999999976653
No 331
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.69 E-value=0.2 Score=46.62 Aligned_cols=106 Identities=14% Similarity=0.200 Sum_probs=71.3
Q ss_pred EEEEecCCCChHH---HHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 97 TVVDATCGNGYDT---LMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 97 ~VLDlGcG~G~~~---~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
.|+=+|.|.|-+. +..|+.... ..++++||-+|.++-.-+.. +-. .+..+|+++-.|..++. ++..+
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~R---kVklyavEKNPNAivtL~~~-n~~---~W~~~Vtii~~DMR~w~---ap~eq 439 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDR---KVKLYAVEKNPNAIVTLQNR-NFE---CWDNRVTIISSDMRKWN---APREQ 439 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcC---ceEEEEEecCcchhhhhhhh-chh---hhcCeeEEEeccccccC---Cchhh
Confidence 6888999999665 344444332 47899999999998766552 221 24688999976655444 33457
Q ss_pred EEEEEEeC-CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNL-GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~-~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.|++++-+ |..-+. +-..+.|..+-+.|||.|+.+=..+
T Consensus 440 ~DI~VSELLGSFGDN--------ELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 440 ADIIVSELLGSFGDN--------ELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred ccchHHHhhccccCc--------cCCHHHHHHHHhhcCCCceEccchh
Confidence 89988763 322222 2236899999999999998754333
No 332
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=94.66 E-value=0.39 Score=43.94 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=63.6
Q ss_pred hcCCCCEEEEec-CCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc----cccccccceEEEecCh-hh
Q 041272 91 VVRKGDTVVDAT-CGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT----TSKAEKGLVKLFNMCH-SR 163 (267)
Q Consensus 91 ~l~~~~~VLDlG-cG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~----~~~~~~~~v~~~~~~~-~~ 163 (267)
.++++++||=+| +|. |..+..+|+..+. +..+|+++|.+++.++.+++..... + ....++.... .+
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~--g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~G-----a~~~~i~~~~~~~ 244 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPI--GPSLLVVTDVNDERLARAQRLFPPEAASRG-----IELLYVNPATIDD 244 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhccc--CCceEEEEcCCHHHHHHHHHhccccccccC-----ceEEEECCCcccc
Confidence 467888999897 565 8888888887532 1247999999999999988742210 1 0111221100 11
Q ss_pred ----hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 164 ----MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 164 ----l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
+.+.. ....+|+++...+. ...+..+.+.++++|.+++.
T Consensus 245 ~~~~v~~~t-~g~g~D~vid~~g~---------------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 245 LHATLMELT-GGQGFDDVFVFVPV---------------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHHHHHHh-CCCCCCEEEEcCCC---------------HHHHHHHHHHhccCCeEEEE
Confidence 12221 22347777665321 35778889999988876554
No 333
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=94.62 E-value=0.6 Score=41.85 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=63.0
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----h-h
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-----H-S 162 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-----~-~ 162 (267)
..++++++||=.|+|. |..+..+|+..|. .+|+++|.+++..+.+++ .+ . ..++... . .
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~----~~vi~~~~~~~~~~~~~~----~G----a--~~~i~~~~~~~~~~~ 248 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGA----SRIIGVDLNPSKFEQAKK----FG----V--TEFVNPKDHDKPVQE 248 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHHHH----cC----C--ceEEcccccchhHHH
Confidence 3467899999999876 7777778887642 489999999988887754 22 0 1111111 0 1
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEe
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVY 220 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 220 (267)
.+..... . .+|+++-..+. ...+..+.+.+++| |++++...
T Consensus 249 ~v~~~~~-~-~~d~vid~~G~---------------~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 249 VIAEMTG-G-GVDYSFECTGN---------------IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred HHHHHhC-C-CCCEEEECCCC---------------hHHHHHHHHHhhcCCCEEEEECc
Confidence 1222221 2 47777765321 25677788889996 98877654
No 334
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=94.53 E-value=0.33 Score=43.52 Aligned_cols=97 Identities=12% Similarity=0.058 Sum_probs=58.8
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-ChhhhhhcCC
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-CHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~ 169 (267)
++++++||-.|+|. |..+..+|+..+ .+|++++.+++....+.+ +.+ .. .++.. +...+....
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G-----a~vi~~~~~~~~~~~~~~---~~G----a~--~vi~~~~~~~~~~~~- 245 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG-----LKVTVISSSSNKEDEAIN---RLG----AD--SFLVSTDPEKMKAAI- 245 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC-----CEEEEEeCCcchhhhHHH---hCC----Cc--EEEcCCCHHHHHhhc-
Confidence 46788999999987 888888888864 578888887654332222 222 11 11111 111222222
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+|+++-..+. ...++++.+.|++||.++....
T Consensus 246 --~~~D~vid~~g~---------------~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 246 --GTMDYIIDTVSA---------------VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --CCCCEEEECCCC---------------HHHHHHHHHHhcCCcEEEEeCC
Confidence 136777755321 2467888999999999986643
No 335
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.53 E-value=0.43 Score=41.86 Aligned_cols=107 Identities=15% Similarity=0.069 Sum_probs=65.6
Q ss_pred HHhhhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-hhhh
Q 041272 87 VWKHVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-HSRM 164 (267)
Q Consensus 87 l~~~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-~~~l 164 (267)
+....+.||++|-=+|-|. |.++..+|+.+| .+|++||-+...-+.|-+++.+. .|+... ..++
T Consensus 174 Lk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG-----~rV~vis~~~~kkeea~~~LGAd---------~fv~~~~d~d~ 239 (360)
T KOG0023|consen 174 LKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMG-----MRVTVISTSSKKKEEAIKSLGAD---------VFVDSTEDPDI 239 (360)
T ss_pred hHHcCCCCCcEEEEecCcccchHHHHHHHHhC-----cEEEEEeCCchhHHHHHHhcCcc---------eeEEecCCHHH
Confidence 3344567999988888776 999999999985 69999999986655555544331 122111 1222
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.+.... ..|.++-....+ ....+..+.++||++|.++++..+.
T Consensus 240 ~~~~~~--~~dg~~~~v~~~-------------a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 240 MKAIMK--TTDGGIDTVSNL-------------AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred HHHHHH--hhcCcceeeeec-------------cccchHHHHHHhhcCCEEEEEeCcC
Confidence 221111 223332221000 1357788999999999999876654
No 336
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=94.52 E-value=0.33 Score=42.88 Aligned_cols=98 Identities=20% Similarity=0.327 Sum_probs=60.8
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh----hhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS----RME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~----~l~ 165 (267)
.++++.+||..|+|. |..+..+|+..+. ..|++++.++...+.+++. + .. .++..... .+.
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~----~~v~~~~~~~~~~~~~~~~----g----~~--~vi~~~~~~~~~~i~ 229 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGA----ARIIAVDSNPERLDLAKEA----G----AT--DIINPKNGDIVEQIL 229 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEEeCCHHHHHHHHHh----C----Cc--EEEcCCcchHHHHHH
Confidence 456788999988764 7777888887642 4789998888777766542 1 01 11111111 122
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
... .+..+|+++...+. ...+..+.+.|+++|+++..
T Consensus 230 ~~~-~~~~~d~vld~~g~---------------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 230 ELT-GGRGVDCVIEAVGF---------------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred HHc-CCCCCcEEEEccCC---------------HHHHHHHHHHhhcCCEEEEE
Confidence 222 22358887765211 24788888999999998754
No 337
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=94.46 E-value=0.5 Score=42.41 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=63.9
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-----h-h
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-----H-S 162 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-----~-~ 162 (267)
..++++++||=.|+|. |..+..+|+..|. .+|+++|.+++..+.+++ .+ .. .++... . .
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~----~~vi~~~~~~~~~~~~~~----lG----a~--~~i~~~~~~~~~~~ 247 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGA----SRIIGIDINPDKFELAKK----FG----AT--DCVNPKDHDKPIQQ 247 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEeCCHHHHHHHHH----cC----CC--EEEcccccchHHHH
Confidence 3467899999999876 7777888887642 379999999998887754 22 11 111111 1 1
Q ss_pred hhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEe
Q 041272 163 RMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVY 220 (267)
Q Consensus 163 ~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 220 (267)
.+.+... . .+|+++-..+. ...+..+.+.|+++ |++++...
T Consensus 248 ~v~~~~~-~-g~d~vid~~g~---------------~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 248 VLVEMTD-G-GVDYTFECIGN---------------VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred HHHHHhC-C-CCcEEEECCCC---------------hHHHHHHHHhhccCCCeEEEEcc
Confidence 1222221 2 57888766321 25778888999987 98877654
No 338
>PRK11524 putative methyltransferase; Provisional
Probab=94.46 E-value=0.096 Score=45.53 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=43.1
Q ss_pred cceEEEecChhhhhhcCCCCCcEEEEEEeCCCCCCCCC-ceee------chhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 152 GLVKLFNMCHSRMEEIVPKSTAVRLVAFNLGYLPGGDK-SVIT------TSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 152 ~~v~~~~~~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~-~~~~------~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.+..++++|..+....++ +.++|+|+.|++|--..+. .... ...-....+.++.++|||||.+++..
T Consensus 7 ~~~~i~~gD~~~~l~~l~-~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIP-SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcc-cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 345677777776554443 3489999999988321110 0000 01123578899999999999998854
No 339
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.44 E-value=0.38 Score=42.78 Aligned_cols=135 Identities=10% Similarity=-0.027 Sum_probs=73.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
..+++|+-||-|.+..-+.... -.-+.++|+++.+++.-+.|... -.++..+...+........++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-----f~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~ 68 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-----FEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDV 68 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-----CeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCC
Confidence 3589999999999998887751 13577899999998887776542 223333333222211111168
Q ss_pred EEEEEeCCCCCCCCCceeechhhH----HHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCceE
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETT----KMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDWI 246 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (267)
|+++..++.=+++-...-....+. ---+.++...++| .+++......-... ....++.+.+.|...+|.
T Consensus 69 DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~-~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 69 DVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS-KGQTFDEIKKELEELGYG 141 (328)
T ss_pred CEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc-CchHHHHHHHHHHHcCCc
Confidence 999999766433321111111111 1234455666788 34344432211010 123455556666666664
No 340
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=94.41 E-value=0.64 Score=41.66 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=63.1
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccce-EEEecC---hhhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV-KLFNMC---HSRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v-~~~~~~---~~~l~ 165 (267)
.++++.+||=.|+|. |..+..+|+..|. .+|+++|.+++..+.+++ + + ...+ .....+ ...+.
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~----~~Vi~~~~~~~~~~~~~~-~---g----a~~~i~~~~~~~~~~~~~~ 248 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGA----SRIIGVDINEDKFEKAKE-F---G----ATDFINPKDSDKPVSEVIR 248 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEeCCHHHHHHHHH-c---C----CCcEeccccccchHHHHHH
Confidence 467899999999876 7777888888642 379999999988887754 2 2 1111 100000 11122
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC-cEEEEEEe
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG-GLISMVVY 220 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 220 (267)
+... ..+|+++-..+. ...+..+.+.|+++ |.+++...
T Consensus 249 ~~~~--~g~d~vid~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 249 EMTG--GGVDYSFECTGN---------------ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred HHhC--CCCCEEEECCCC---------------hHHHHHHHHhcccCCCEEEEEcC
Confidence 2222 257888765321 25678888899886 98877654
No 341
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=94.36 E-value=0.53 Score=41.51 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=60.6
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
.+.++.+||=.|+|. |..+..+|+..| .+|+.++.+++..+.+++ + + .. .++.....++...+.
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G-----~~vi~~~~~~~~~~~~~~-~---g----~~--~~i~~~~~~~~~~~~ 224 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMG-----FRTVAISRGSDKADLARK-L---G----AH--HYIDTSKEDVAEALQ 224 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC-----CeEEEEeCChHHHHHHHH-c---C----Cc--EEecCCCccHHHHHH
Confidence 466788999999766 777777888764 589999999887777754 1 2 01 111111111111110
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
....+|+++...+. ...+..+.+.|+++|.++...
T Consensus 225 ~~~~~d~vi~~~g~---------------~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 225 ELGGAKLILATAPN---------------AKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred hcCCCCEEEECCCc---------------hHHHHHHHHHcccCCEEEEEe
Confidence 01136777654211 257788899999999997654
No 342
>PTZ00357 methyltransferase; Provisional
Probab=94.36 E-value=0.3 Score=47.03 Aligned_cols=107 Identities=15% Similarity=0.084 Sum_probs=65.7
Q ss_pred EEEEecCCCChHHHH---HHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhh-ccccc----cccceEEEecChhhhhhcC
Q 041272 97 TVVDATCGNGYDTLM---MLKMVADESSAGCVYGLDIQSEALKSTSSLLDK-TTSKA----EKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~---la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~-~~~~~----~~~~v~~~~~~~~~l~~~~ 168 (267)
.|+=+|+|-|-+... +++..+. ..+|++||.++..+.....+... ..+.. ...+|+++..|...+....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gv---kVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe 779 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGV---RLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAA 779 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCC---cEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccc
Confidence 589999999976543 4444443 46899999997755555554322 11100 0245899987777663211
Q ss_pred --------CCCCcEEEEEEeC-CCCCCCCCceeechhhHHHHHHHHHhcccC----CcE
Q 041272 169 --------PKSTAVRLVAFNL-GYLPGGDKSVITTSETTKMALEAAERILIP----GGL 214 (267)
Q Consensus 169 --------~~~~~~d~ii~~~-~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkp----gG~ 214 (267)
...+++|++|+-+ |.+-+. +-..+.|..+.+.||+ +|+
T Consensus 780 ~~~s~~~P~~~gKaDIVVSELLGSFGDN--------ELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 780 ENGSLTLPADFGLCDLIVSELLGSLGDN--------ELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccccceehHhhhcccccc--------cCCHHHHHHHHHhhhhhcccccc
Confidence 1113689998863 322222 2225888888888887 786
No 343
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.31 E-value=0.7 Score=41.91 Aligned_cols=126 Identities=16% Similarity=0.166 Sum_probs=63.0
Q ss_pred CCEEEEecCCCChHHHHHHHhc-----------CCCCCCcEEEEEeCChHHHHHHHHHHhhccc---------cccccce
Q 041272 95 GDTVVDATCGNGYDTLMMLKMV-----------ADESSAGCVYGLDIQSEALKSTSSLLDKTTS---------KAEKGLV 154 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~-----------~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~---------~~~~~~v 154 (267)
..+|+|+|||+|..++.+...+ +.+-|..+|+.-|.-..--...=+.+..... .....+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 4589999999998886654321 1111345677666553322222222211000 0000112
Q ss_pred EEEecChhhhhhcCCCCCcEEEEEEe--CCCCCCCCCcee--------------e--ch-----------hhHHHHHHHH
Q 041272 155 KLFNMCHSRMEEIVPKSTAVRLVAFN--LGYLPGGDKSVI--------------T--TS-----------ETTKMALEAA 205 (267)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~d~ii~~--~~~lp~~d~~~~--------------~--~~-----------~~~~~~l~~~ 205 (267)
-|+.+.......-+.+..+++++.+. ++++......+. + .+ .+...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555545555688888665 455432111111 0 01 1123344444
Q ss_pred HhcccCCcEEEEEEe
Q 041272 206 ERILIPGGLISMVVY 220 (267)
Q Consensus 206 ~~~LkpgG~l~i~~~ 220 (267)
.+-|.|||+++++..
T Consensus 224 a~ELvpGG~mvl~~~ 238 (386)
T PLN02668 224 AQEMKRGGAMFLVCL 238 (386)
T ss_pred HHHhccCcEEEEEEe
Confidence 566899999998765
No 344
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.31 E-value=0.077 Score=47.35 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=36.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHH
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSL 141 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~ 141 (267)
+-+.|+|+|.|.|+++..++-.+ +..|++||-|....+.|++-
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y-----~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY-----GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc-----CceEEEeccchHHHHHHHHH
Confidence 45699999999999999999776 46999999998877766553
No 345
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=94.26 E-value=0.49 Score=41.82 Aligned_cols=99 Identities=18% Similarity=0.120 Sum_probs=63.8
Q ss_pred hcCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccce-EEEec-Chh-hhh
Q 041272 91 VVRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV-KLFNM-CHS-RME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v-~~~~~-~~~-~l~ 165 (267)
.+++|++||=.|+ | .|..+..+|+..| .+|++++.+++..+.+++.+.. ..+ ..-.. +.. .+.
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G-----~~Vi~~~~~~~~~~~~~~~lGa-------~~vi~~~~~~~~~~~i~ 215 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKG-----CYVVGSAGSDEKVDLLKNKLGF-------DDAFNYKEEPDLDAALK 215 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHHhcCC-------ceeEEcCCcccHHHHHH
Confidence 4678999999997 3 4788888998864 6899999998887777653321 111 10000 111 122
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.... ..+|+++-..+ ...+..+.+.|+++|.++...
T Consensus 216 ~~~~--~gvd~v~d~~g----------------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 216 RYFP--NGIDIYFDNVG----------------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred HhCC--CCcEEEEECCC----------------HHHHHHHHHHhccCcEEEEec
Confidence 2222 35888876532 156788899999999997654
No 346
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=94.26 E-value=0.48 Score=41.85 Aligned_cols=97 Identities=16% Similarity=0.111 Sum_probs=61.5
Q ss_pred cCCC--CEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----
Q 041272 92 VRKG--DTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR---- 163 (267)
Q Consensus 92 l~~~--~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~---- 163 (267)
++++ ++||=.|. |.|..+..+|+..|. .+|++++.+++..+.+++.+.. .. ++.....+
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~----~~Vi~~~~s~~~~~~~~~~lGa-------~~--vi~~~~~~~~~~ 216 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGC----SRVVGICGSDEKCQLLKSELGF-------DA--AINYKTDNVAER 216 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCC----CEEEEEcCCHHHHHHHHHhcCC-------cE--EEECCCCCHHHH
Confidence 5555 89998886 348888889988642 3799999998877777653321 11 12111112
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+.+... ..+|+++...+. ..+.++.+.|+++|+++...
T Consensus 217 i~~~~~--~gvd~vid~~g~----------------~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 217 LRELCP--EGVDVYFDNVGG----------------EISDTVISQMNENSHIILCG 254 (345)
T ss_pred HHHHCC--CCceEEEECCCc----------------HHHHHHHHHhccCCEEEEEe
Confidence 222222 358888865321 34578889999999997653
No 347
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=94.23 E-value=0.68 Score=40.46 Aligned_cols=96 Identities=17% Similarity=0.101 Sum_probs=62.3
Q ss_pred hcCCCCEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----h
Q 041272 91 VVRKGDTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----M 164 (267)
Q Consensus 91 ~l~~~~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l 164 (267)
.+++|.+||=.|. |.|..+..+|+..| .+|++++.+++..+.+++ + + .. .++.....+ +
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G-----~~vi~~~~s~~~~~~l~~-~---G----a~--~vi~~~~~~~~~~v 204 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKG-----CKVIGCAGSDDKVAWLKE-L---G----FD--AVFNYKTVSLEEAL 204 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHH-c---C----CC--EEEeCCCccHHHHH
Confidence 4678899998884 33888888998864 689999999988777765 2 2 11 112111112 2
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..... ..+|+++-..+ ...++.+.+.|+++|+++...
T Consensus 205 ~~~~~--~gvd~vld~~g----------------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 205 KEAAP--DGIDCYFDNVG----------------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred HHHCC--CCcEEEEECCC----------------HHHHHHHHHhhccCCEEEEEc
Confidence 22222 35888776532 156788899999999997643
No 348
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.21 E-value=0.59 Score=41.51 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=65.3
Q ss_pred hhcCCCCEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh-hhhh
Q 041272 90 HVVRKGDTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS-RMEE 166 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~-~l~~ 166 (267)
..+++|++||=.|... |.++..||+..+ +.++++--+++-.+.+++.-.. .-+.+...+.. .+.+
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G-----~~~v~~~~s~~k~~~~~~lGAd-------~vi~y~~~~~~~~v~~ 205 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG-----ATVVAVVSSSEKLELLKELGAD-------HVINYREEDFVEQVRE 205 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcC-----CcEEEEecCHHHHHHHHhcCCC-------EEEcCCcccHHHHHHH
Confidence 3477899999998433 788999999874 3677777777666555442221 11222222122 2222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecC
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVG 222 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 222 (267)
.. ....+|+++-..+ ...+.+..+.|+++|+++.....+
T Consensus 206 ~t-~g~gvDvv~D~vG----------------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 206 LT-GGKGVDVVLDTVG----------------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred Hc-CCCCceEEEECCC----------------HHHHHHHHHHhccCCEEEEEecCC
Confidence 22 2336898887743 267788899999999998766543
No 349
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.18 E-value=0.33 Score=43.64 Aligned_cols=146 Identities=10% Similarity=0.002 Sum_probs=85.9
Q ss_pred HHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-------cccccccce
Q 041272 82 IAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-------TSKAEKGLV 154 (267)
Q Consensus 82 ~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-------~~~~~~~~v 154 (267)
+.....-+..+.+++.-.|+|.|.|.....+|...+. .+-+|+++....-+.|..+.+.+ |. ....+
T Consensus 180 ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~----k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk--~~~~~ 253 (419)
T KOG3924|consen 180 QLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGC----KKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK--KPNKI 253 (419)
T ss_pred HHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhcc----ccccceeeecCcHHHHHHHHHHHHHHHHHhCC--CcCce
Confidence 3444444556889999999999999999999887654 67789988877666665554432 20 02234
Q ss_pred EEEecChhhh--hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCC-CCCh-hhH
Q 041272 155 KLFNMCHSRM--EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGH-PGGR-EEL 230 (267)
Q Consensus 155 ~~~~~~~~~l--~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-~~~~-~~~ 230 (267)
+.++++..+- ...+.. ..++|+.| .+...++...+.- +++.-+++|-+++-.-.... +... ...
T Consensus 254 ~~i~gsf~~~~~v~eI~~--eatvi~vN---------N~~Fdp~L~lr~~-eil~~ck~gtrIiS~~~L~~r~rs~es~~ 321 (419)
T KOG3924|consen 254 ETIHGSFLDPKRVTEIQT--EATVIFVN---------NVAFDPELKLRSK-EILQKCKDGTRIISSKPLVPRPRSQESTS 321 (419)
T ss_pred eecccccCCHHHHHHHhh--cceEEEEe---------cccCCHHHHHhhH-HHHhhCCCcceEeccccccccccchhHHH
Confidence 5555443321 112222 35677776 3444455544444 88888899999865433222 1111 223
Q ss_pred HHHHHHHHhCCCCce
Q 041272 231 EAVEAFARSLSVDDW 245 (267)
Q Consensus 231 ~~~~~~~~~l~~~~~ 245 (267)
..+.++........+
T Consensus 322 ~~~~df~~it~t~~l 336 (419)
T KOG3924|consen 322 RRVSDFVAITKTRLL 336 (419)
T ss_pred HHHHHHHhhccchhh
Confidence 455666665554444
No 350
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=94.06 E-value=0.66 Score=41.95 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=59.0
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHH-HHHHHHHHhhccccccccceEEEec-ChhhhhhcCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEA-LKSTSSLLDKTTSKAEKGLVKLFNM-CHSRMEEIVP 169 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~-i~~a~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~ 169 (267)
+++++||=.|+|. |..+..+|+..| ++|++++.+++. .+.+++ .+ .. .++.. +...+.....
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G-----a~Vi~~~~~~~~~~~~a~~----lG----a~--~~i~~~~~~~v~~~~~ 241 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG-----LRVTVISRSSEKEREAIDR----LG----AD--SFLVTTDSQKMKEAVG 241 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC-----CeEEEEeCChHHhHHHHHh----CC----Cc--EEEcCcCHHHHHHhhC
Confidence 5788999999877 778888888874 579999987653 344332 23 11 11111 1112222221
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
.+|+++-..+. ...+..+.+.|++||.++....
T Consensus 242 ---~~D~vid~~G~---------------~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 242 ---TMDFIIDTVSA---------------EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred ---CCcEEEECCCc---------------HHHHHHHHHhhcCCCEEEEEcc
Confidence 37777765321 2467888899999999987654
No 351
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=94.02 E-value=1.1 Score=39.13 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=60.8
Q ss_pred hhcCCCCEEEEecCC-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 90 HVVRKGDTVVDATCG-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
..+.++.+||-.|+| .|..+..+|+..+ .+|++++.+++..+.+++ ... . .++.....+.....
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G-----~~v~~~~~~~~~~~~~~~-~g~-------~--~~~~~~~~~~~~~~ 222 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMG-----FETVAITRSPDKRELARK-LGA-------D--EVVDSGAELDEQAA 222 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCC-----CEEEEEeCCHHHHHHHHH-hCC-------c--EEeccCCcchHHhc
Confidence 346788899999987 4777777887763 589999999988877743 211 1 11111111111001
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...+|+++...+. ...+..+.+.|+++|.++...
T Consensus 223 --~~~~d~vi~~~~~---------------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 223 --AGGADVILVTVVS---------------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred --cCCCCEEEECCCc---------------HHHHHHHHHhcccCCEEEEEC
Confidence 1247777754211 256788889999999987654
No 352
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.75 E-value=0.28 Score=46.08 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=35.7
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
++.+|+=+|+|. |..+..+++.+| +.|+.+|.+++.++.+++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG-----A~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG-----AIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-----CEEEEEeCCHHHHHHHHH
Confidence 568999999999 888888888874 579999999998777765
No 353
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.73 E-value=0.09 Score=49.69 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=35.8
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCCh
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQS 132 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~ 132 (267)
.|.++..|||+||.+|.+....++.++. +.-|+|||+-|
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv---~slivGvDl~p 79 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPV---GSLIVGVDLVP 79 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCC---CceEEEeeeee
Confidence 4788999999999999999999999987 78999999977
No 354
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.66 E-value=2.3 Score=38.89 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=55.9
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
..|.+|+=+|+|. |......++.+ +.+|+.+|.++.....|+. .+ ..+.. .. +...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-----Ga~ViV~d~dp~r~~~A~~----~G-------~~v~~--le---eal~-- 249 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-----GARVIVTEVDPIRALEAAM----DG-------FRVMT--ME---EAAK-- 249 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-----cCEEEEEeCChhhHHHHHh----cC-------CEeCC--HH---HHHh--
Confidence 4688999999998 77777777765 4689999999865444432 12 11111 11 1111
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHHHHH-HHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKMALE-AAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~~ 220 (267)
..|+++...+. ..++. +....+|+|++++.+..
T Consensus 250 -~aDVVItaTG~---------------~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 250 -IGDIFITATGN---------------KDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred -cCCEEEECCCC---------------HHHHHHHHHhcCCCCcEEEEECC
Confidence 35777665321 35554 47889999998866543
No 355
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=93.60 E-value=0.9 Score=40.72 Aligned_cols=98 Identities=21% Similarity=0.285 Sum_probs=63.3
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC----hhhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC----HSRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~----~~~l~ 165 (267)
.+.++++||-.|+|. |..+..+|+..|. ..|+++|.+++..+.+++. + . -.++... .+.+.
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~----~~v~~~~~~~~k~~~~~~~----g----~--~~~i~~~~~~~~~~v~ 248 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGC----TTIIAVDIVDSRLELAKEL----G----A--THVINPKEEDLVAAIR 248 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEeCCHHHHHHHHHc----C----C--cEEecCCCcCHHHHHH
Confidence 456788999998876 7788888888753 4799999998887766541 2 1 1111111 11222
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
... ...+|+++-..+. ...+..+.+.|+++|.++...
T Consensus 249 ~~~--~~~~d~vld~~g~---------------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 249 EIT--GGGVDYALDTTGV---------------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred HHh--CCCCcEEEECCCC---------------cHHHHHHHHHhccCCEEEEeC
Confidence 222 2357888766321 246788899999999987654
No 356
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=93.50 E-value=0.79 Score=40.68 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=63.0
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-hhhhhc
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEEI 167 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~ 167 (267)
..++++.+||=.|+|. |..+..+|+..+. .+|++++.+++..+.+++. +. ..-+.....+. ..+.+.
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~----~~v~~~~~~~~~~~~~~~~----ga---~~~i~~~~~~~~~~l~~~ 236 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGA----SKIIVSEPSEARRELAEEL----GA---TIVLDPTEVDVVAEVRKL 236 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHHh----CC---CEEECCCccCHHHHHHHH
Confidence 3467888999888765 6677777777642 3899999999888877542 20 00000011111 122222
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. ....+|+++-..+. ...++.+.+.|+++|.++....
T Consensus 237 ~-~~~~~d~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 237 T-GGGGVDVSFDCAGV---------------QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred h-CCCCCCEEEECCCC---------------HHHHHHHHHhccCCCEEEEEcc
Confidence 2 12247888776321 2467888999999999876544
No 357
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=93.49 E-value=0.53 Score=41.48 Aligned_cols=102 Identities=23% Similarity=0.280 Sum_probs=63.6
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-hhhhhhc
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-HSRMEEI 167 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~ 167 (267)
..+.++.+||-.|+|. |..+..+|+.. +.+|+++..+++..+.+++.- . ..-+.....+ ...+...
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~-----g~~v~~~~~s~~~~~~~~~~g-~------~~v~~~~~~~~~~~l~~~ 222 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKAR-----GARVIVVDIDDERLEFARELG-A------DDTINVGDEDVAARLREL 222 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCeEEEECCCHHHHHHHHHhC-C------CEEecCcccCHHHHHHHH
Confidence 3467888999998875 77888888886 468999988888877764421 1 0001111111 1122222
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. +..+|+++...+- ...+..+.+.|+++|.++...
T Consensus 223 ~~-~~~vd~vld~~g~---------------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 223 TD-GEGADVVIDATGN---------------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred hC-CCCCCEEEECCCC---------------HHHHHHHHHHHhcCCEEEEEc
Confidence 22 2357888776311 256788899999999987544
No 358
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=93.35 E-value=0.99 Score=40.36 Aligned_cols=96 Identities=11% Similarity=0.026 Sum_probs=59.1
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe-cChhhhhhcCCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN-MCHSRMEEIVPK 170 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~~ 170 (267)
+++.+||-.|+|. |..+..+|+..+ .+|+.++.+++....+.+. .+ .. .++. .+...+....
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G-----~~vi~~~~~~~~~~~~~~~---~G----a~--~~i~~~~~~~~~~~~-- 242 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMG-----HHVTVISSSDKKREEALEH---LG----AD--DYLVSSDAAEMQEAA-- 242 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCC-----CeEEEEeCCHHHHHHHHHh---cC----Cc--EEecCCChHHHHHhc--
Confidence 5788999888876 777788888764 5788898887665554432 22 11 1111 1111222221
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+|+++-..+. ...+..+.+.|++||+++....
T Consensus 243 -~~~D~vid~~g~---------------~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 243 -DSLDYIIDTVPV---------------FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred -CCCcEEEECCCc---------------hHHHHHHHHHhccCCEEEEECC
Confidence 146777765321 2467788899999999977544
No 359
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.32 E-value=1.4 Score=32.28 Aligned_cols=93 Identities=14% Similarity=0.040 Sum_probs=55.5
Q ss_pred CCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC-CcEEEEEEeC
Q 041272 103 CGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS-TAVRLVAFNL 181 (267)
Q Consensus 103 cG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~-~~~d~ii~~~ 181 (267)
||.|.++..+++.+.. .+.+|+.+|.+++.++.+++. .+.++.++..+...+...+ ...+.++...
T Consensus 4 ~G~g~~~~~i~~~L~~--~~~~vvvid~d~~~~~~~~~~-----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE--GGIDVVVIDRDPERVEELREE-----------GVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHH--TTSEEEEEESSHHHHHHHHHT-----------TSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHh--CCCEEEEEECCcHHHHHHHhc-----------ccccccccchhhhHHhhcCccccCEEEEcc
Confidence 6778899888887754 123899999999998887652 2567777766544332111 2466666552
Q ss_pred CCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 182 GYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 182 ~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. .+.....+-...+.+.|...++....
T Consensus 71 ~------------~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 71 D------------DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp S------------SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred C------------CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 1 11222233344566678877766554
No 360
>PRK10083 putative oxidoreductase; Provisional
Probab=93.25 E-value=0.93 Score=39.90 Aligned_cols=101 Identities=18% Similarity=0.114 Sum_probs=59.8
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHh-cCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKM-VADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~-~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
.+.++.+||=.|+|. |..+..+|+. .|. ..++++|.+++..+.+++. + .. .++.....++.+..
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~----~~v~~~~~~~~~~~~~~~~----G----a~--~~i~~~~~~~~~~~ 222 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNV----KAVIVADRIDERLALAKES----G----AD--WVINNAQEPLGEAL 222 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCC----CEEEEEcCCHHHHHHHHHh----C----Cc--EEecCccccHHHHH
Confidence 467889999999765 6666667774 343 4688999999888777652 1 00 11111111122211
Q ss_pred C-CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 P-KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~-~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. ...++|+++...+. ...+.++.+.|+++|.++....
T Consensus 223 ~~~g~~~d~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 223 EEKGIKPTLIIDAACH---------------PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred hcCCCCCCEEEECCCC---------------HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 12234555554221 2467888999999999987644
No 361
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.21 E-value=0.97 Score=42.16 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=34.5
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHH
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLL 142 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~ 142 (267)
..+++|+-||.|.+..-+-.. | ...|.++|+++.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G----~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G----GQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C----CEEEEEEechHHHHHHHHHHc
Confidence 459999999999999988664 2 246788999998888777764
No 362
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.20 E-value=1.3 Score=36.70 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=51.6
Q ss_pred CCCEEEEecCCCCh--HHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-hhhhhhcCCC
Q 041272 94 KGDTVVDATCGNGY--DTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-HSRMEEIVPK 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~--~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~~ 170 (267)
....++++.|+.|. .++.||-...+ .+++++.|-.+++.+...++.+...+ ....++|+.++ .+++...+
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~--TgGR~vCIvp~~~~~~~~~~~l~~~~---~~~~vEfvvg~~~e~~~~~~-- 113 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQ--TGGRHVCIVPDEQSLSEYKKALGEAG---LSDVVEFVVGEAPEEVMPGL-- 113 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHh--cCCeEEEEcCChhhHHHHHHHHhhcc---ccccceEEecCCHHHHHhhc--
Confidence 34578999776543 34444332222 36899999999998888888888766 34557887765 34444333
Q ss_pred CCcEEEEEEe
Q 041272 171 STAVRLVAFN 180 (267)
Q Consensus 171 ~~~~d~ii~~ 180 (267)
..+|+++.|
T Consensus 114 -~~iDF~vVD 122 (218)
T PF07279_consen 114 -KGIDFVVVD 122 (218)
T ss_pred -cCCCEEEEe
Confidence 247888877
No 363
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.20 E-value=1.3 Score=39.11 Aligned_cols=102 Identities=23% Similarity=0.214 Sum_probs=63.7
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccce-EEEecC----hhh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV-KLFNMC----HSR 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v-~~~~~~----~~~ 163 (267)
..++++.+||-.|+|. |..+..+|+..|. ..|+.++.+++..+.+++. + ...+ .....+ ...
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~G~----~~v~~~~~~~~~~~~~~~~----g----~~~vi~~~~~~~~~~~~~ 225 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAFGA----TKVVVTDIDPSRLEFAKEL----G----ATHTVNVRTEDTPESAEK 225 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----cEEEEECCCHHHHHHHHHc----C----CcEEeccccccchhHHHH
Confidence 3467889999888876 7788888888642 2389999888887777542 2 1111 100001 112
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+..... +..+|+++...+. ...+..+.+.|+++|+++...
T Consensus 226 ~~~~~~-~~~~d~vld~~g~---------------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 226 IAELLG-GKGPDVVIECTGA---------------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred HHHHhC-CCCCCEEEECCCC---------------HHHHHHHHHHhhcCCEEEEEc
Confidence 333322 2358888876321 236788899999999987654
No 364
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=93.18 E-value=0.81 Score=38.96 Aligned_cols=98 Identities=21% Similarity=0.173 Sum_probs=61.6
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
..+.++.+||-.|+|. |..+..+|+..+. .+|++++.+++..+.+++.- . ...+ +... ... .
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~----~~vi~~~~~~~~~~~~~~~g-~------~~~~--~~~~-~~~---~ 155 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGA----REVVGVDPDAARRELAEALG-P------ADPV--AADT-ADE---I 155 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----CcEEEECCCHHHHHHHHHcC-C------Cccc--cccc-hhh---h
Confidence 3467889999999877 7778888887643 23999999998887766531 0 0111 1000 000 0
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....+|+++...+. ...+....+.|+++|.++....
T Consensus 156 -~~~~~d~vl~~~~~---------------~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 156 -GGRGADVVIEASGS---------------PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred -cCCCCCEEEEccCC---------------hHHHHHHHHHhcCCcEEEEEec
Confidence 12357777755221 2467788889999999976543
No 365
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.13 E-value=1 Score=36.34 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=59.7
Q ss_pred EEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-------cc------cccccceEEEecCh
Q 041272 97 TVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-------TS------KAEKGLVKLFNMCH 161 (267)
Q Consensus 97 ~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-------~~------~~~~~~v~~~~~~~ 161 (267)
+|-=+|+|+ | .++..++.. +.+|+-+|.+++.++.+++.++.. +. .....++.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~--- 71 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTT--- 71 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEES---
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccccc---
Confidence 355678776 4 334444443 579999999999999988887651 10 01134455432
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
++.+.. ..|+|+-.. ....+.+.++++++-+.+.|+-+|.-.
T Consensus 72 -dl~~~~----~adlViEai----------~E~l~~K~~~~~~l~~~~~~~~ilasn 113 (180)
T PF02737_consen 72 -DLEEAV----DADLVIEAI----------PEDLELKQELFAELDEICPPDTILASN 113 (180)
T ss_dssp -SGGGGC----TESEEEE-S-----------SSHHHHHHHHHHHHCCS-TTSEEEE-
T ss_pred -CHHHHh----hhheehhhc----------cccHHHHHHHHHHHHHHhCCCceEEec
Confidence 233322 478888872 334677789999999999999888543
No 366
>PRK06940 short chain dehydrogenase; Provisional
Probab=92.87 E-value=0.87 Score=39.09 Aligned_cols=112 Identities=19% Similarity=0.142 Sum_probs=62.8
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC---C
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV---P 169 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~---~ 169 (267)
+.+|=-|+ |.++..+++.+.. +.+|+.+|.+++.++...+.++..+ .++.++..|..+... .. .
T Consensus 3 k~~lItGa--~gIG~~la~~l~~---G~~Vv~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGA---GKKVLLADYNEENLEAAAKTLREAG-----FDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhC---CCEEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEEeecCCHHHHHHHHHHHH
Confidence 35555564 5788888888754 6899999999877766655554422 345555554443321 11 1
Q ss_pred CCCcEEEEEEeCCCCCCCCC---ceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDK---SVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~---~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
....+|.++.+.+..+.... .+.........+++.+.+.++++|.+++
T Consensus 73 ~~g~id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 73 TLGPVTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred hcCCCCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 12368999999876432110 0001122233455666666666554433
No 367
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=92.86 E-value=1.9 Score=37.71 Aligned_cols=102 Identities=19% Similarity=0.147 Sum_probs=62.0
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-c
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-I 167 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~ 167 (267)
..+.++.+||-.|+|. |..+..+|+..+. ..|+.++.+++..+.+++. + .. .++.....+... .
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~----~~v~~~~~~~~~~~~~~~~----g----~~--~~~~~~~~~~~~~~ 220 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGA----SRVTVAEPNEEKLELAKKL----G----AT--ETVDPSREDPEAQK 220 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----cEEEEECCCHHHHHHHHHh----C----Ce--EEecCCCCCHHHHH
Confidence 3467889999998764 6677778877642 2389999998887776442 2 11 122211111100 1
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
......+|+++...+. ...+..+.+.|+++|.++....
T Consensus 221 ~~~~~~vd~v~~~~~~---------------~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 221 EDNPYGFDVVIEATGV---------------PKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred HhcCCCCcEEEECCCC---------------hHHHHHHHHHHhcCCEEEEEec
Confidence 1112357888865321 2577888999999999976543
No 368
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.84 E-value=1.2 Score=38.10 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=51.8
Q ss_pred hhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 90 HVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
..+.+|+..+|+|.-+|.+|-.|.++ +-.|++||.-+- .+++-. .+.|+... +|-.++.+
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr------~m~V~aVDng~m-----a~sL~d------tg~v~h~r---~DGfk~~P 266 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKR------NMRVYAVDNGPM-----AQSLMD------TGQVTHLR---EDGFKFRP 266 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhc------ceEEEEeccchh-----hhhhhc------ccceeeee---ccCccccc
Confidence 45789999999999999999999988 589999997552 223323 34565554 34445555
Q ss_pred CCCcEEEEEEeC
Q 041272 170 KSTAVRLVAFNL 181 (267)
Q Consensus 170 ~~~~~d~ii~~~ 181 (267)
....+|..++++
T Consensus 267 ~r~~idWmVCDm 278 (358)
T COG2933 267 TRSNIDWMVCDM 278 (358)
T ss_pred CCCCCceEEeeh
Confidence 445789999995
No 369
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=92.70 E-value=0.2 Score=42.75 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=39.4
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCC----CcEEEEEeCChHHHHHHHHHHhh
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESS----AGCVYGLDIQSEALKSTSSLLDK 144 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p----~~~v~giD~s~~~i~~a~~~~~~ 144 (267)
-+|+|+|.|+|.++..+.+.+....| ..+++-||.|+.+.+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 59999999999999999988765222 25899999999999988888866
No 370
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=92.69 E-value=1.4 Score=39.45 Aligned_cols=101 Identities=19% Similarity=0.177 Sum_probs=61.9
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec--Ch-hhhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM--CH-SRMEE 166 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~ 166 (267)
.+.++.+||=.|+|. |..+..+|+..|. ..|++++.+++..+.+++ +... ..+..... +. ..+..
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G~----~~v~~~~~~~~~~~~~~~-~g~~------~~v~~~~~~~~~~~~l~~ 248 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGA----SRIIAVDINKDKFEKAKQ-LGAT------ECINPRDQDKPIVEVLTE 248 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEeCCHHHHHHHHH-hCCC------eecccccccchHHHHHHH
Confidence 467888999888866 6777778887643 468999999888777744 2110 00111111 11 11222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhccc-CCcEEEEEE
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILI-PGGLISMVV 219 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~ 219 (267)
... ..+|+++...+. ...+..+.+.|+ ++|+++...
T Consensus 249 ~~~--~~~d~vid~~g~---------------~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 249 MTD--GGVDYAFEVIGS---------------ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred HhC--CCCcEEEECCCC---------------HHHHHHHHHHhccCCCEEEEEe
Confidence 232 357888765221 257778889999 999998654
No 371
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.65 E-value=0.88 Score=39.86 Aligned_cols=97 Identities=23% Similarity=0.262 Sum_probs=69.3
Q ss_pred CCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCc
Q 041272 95 GDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTA 173 (267)
Q Consensus 95 ~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~ 173 (267)
..+|.-||-|. |..+..+|--+ +++|+-+|+|...+.+-..-. ..++..+-....++.+... .
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-----gA~Vtild~n~~rl~~ldd~f--------~~rv~~~~st~~~iee~v~---~ 231 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-----GADVTILDLNIDRLRQLDDLF--------GGRVHTLYSTPSNIEEAVK---K 231 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-----CCeeEEEecCHHHHhhhhHhh--------CceeEEEEcCHHHHHHHhh---h
Confidence 45788888887 88888888766 579999999988776655432 3567777666666666553 4
Q ss_pred EEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 174 VRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
.|++|... .+.....+.-..+++.+.+|||+.++
T Consensus 232 aDlvIgaV---------LIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 232 ADLVIGAV---------LIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred ccEEEEEE---------EecCCCCceehhHHHHHhcCCCcEEE
Confidence 78888762 22223444567788899999999985
No 372
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=92.39 E-value=0.55 Score=40.74 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=50.1
Q ss_pred hhHHHHhhHHHhhhcCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc
Q 041272 78 TLITIAANGVWKHVVRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT 145 (267)
Q Consensus 78 ~~~~~~~~~l~~~~l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~ 145 (267)
.....+...++...-.+++.|||.-+|+|..+....+. +..++|+|++++-++.+.+++...
T Consensus 206 ~~P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~------~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 206 QKPLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNL------GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CChHHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHc------CCceEEEecCHHHHHHHHHHHHhh
Confidence 34455566666556678999999999999888776665 468999999999999999998764
No 373
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=92.38 E-value=1.7 Score=38.75 Aligned_cols=99 Identities=20% Similarity=0.201 Sum_probs=59.6
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccce-EEEecCh----hhhhh
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV-KLFNMCH----SRMEE 166 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v-~~~~~~~----~~l~~ 166 (267)
.++.+||=.|+|. |..+..+|+..+. .+|++++.+++..+.+++ .+ ...+ ....... ..+..
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~----~~v~~~~~~~~~~~~~~~----~g----~~~vi~~~~~~~~~~~~~i~~ 243 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGA----RRVIVIDGSPERLELARE----FG----ADATIDIDELPDPQRRAIVRD 243 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHHHH----cC----CCeEEcCcccccHHHHHHHHH
Confidence 4788898888776 7777778887642 389999998887766643 22 1111 0000000 11222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. ....+|+++...+. ...+....+.|+++|+++...
T Consensus 244 ~~-~~~~~d~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 244 IT-GGRGADVVIEASGH---------------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred Hh-CCCCCcEEEECCCC---------------hHHHHHHHHHhccCCEEEEEc
Confidence 22 22357888765321 246778889999999997654
No 374
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=92.32 E-value=1.2 Score=39.67 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=59.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhc--------C----CCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMV--------A----DESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH 161 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~--------~----~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~ 161 (267)
..-+|+|+||.+|..++.+...+ . .+-|..+|+--|.-..=-..-=+.+..........+--|+.+..
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 34599999999999988766532 1 11123577888865433222222222210000001233444444
Q ss_pred hhhhhcCCCCCcEEEEEEe--CCCCCCCCC-------------ceeec---h------------hhHHHHHHHHHhcccC
Q 041272 162 SRMEEIVPKSTAVRLVAFN--LGYLPGGDK-------------SVITT---S------------ETTKMALEAAERILIP 211 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~--~~~lp~~d~-------------~~~~~---~------------~~~~~~l~~~~~~Lkp 211 (267)
.....-+.+..++|++++. +|++..... .+... + .+...+|+.=.+=|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 4555545556689998766 455432111 11111 1 1123344444566899
Q ss_pred CcEEEEEEec
Q 041272 212 GGLISMVVYV 221 (267)
Q Consensus 212 gG~l~i~~~~ 221 (267)
||+++++...
T Consensus 176 GG~mvl~~~g 185 (334)
T PF03492_consen 176 GGRMVLTFLG 185 (334)
T ss_dssp EEEEEEEEEE
T ss_pred CcEEEEEEee
Confidence 9999988763
No 375
>PRK07454 short chain dehydrogenase; Provisional
Probab=91.91 E-value=1.3 Score=36.77 Aligned_cols=83 Identities=12% Similarity=-0.014 Sum_probs=52.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+.++|-.|+ +|.++..+++++-. .+.+|+.++.+++..+...+.++..+ .++.++..|..+.... .
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAK--AGWDLALVARSQDALEALAAELRSTG-----VKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhCC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 3567888884 67777777776533 15699999999876665555444322 4566666665543321 1
Q ss_pred --CCCCcEEEEEEeCCCC
Q 041272 169 --PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~l 184 (267)
......|.++.+.+..
T Consensus 77 ~~~~~~~id~lv~~ag~~ 94 (241)
T PRK07454 77 LLEQFGCPDVLINNAGMA 94 (241)
T ss_pred HHHHcCCCCEEEECCCcc
Confidence 1113589999887654
No 376
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=91.85 E-value=2.1 Score=35.95 Aligned_cols=83 Identities=8% Similarity=0.008 Sum_probs=52.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.+++||=.| |+|.++..+++++-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+... .
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~i~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQ--AGAEVILNGRDPAKLAAAAESLKGQG-----LSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcC-----ceEEEEEccCCCHHHHHHHHHH
Confidence 467899888 567777777776533 15789999999887776666665433 345555555443222 1
Q ss_pred -CCCCCcEEEEEEeCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~l 184 (267)
......+|.++.+.+..
T Consensus 81 ~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 81 FEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred HHHhcCCCCEEEECCCCC
Confidence 11123578999887664
No 377
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=91.76 E-value=2.4 Score=36.56 Aligned_cols=104 Identities=11% Similarity=0.107 Sum_probs=67.3
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC--C
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS--T 172 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~--~ 172 (267)
|..|+=+| ---..++.++-. +- ..+|..+|+++..++..++.+++.| .+|++.+..|. ...++++ .
T Consensus 153 gK~I~vvG-DDDLtsia~aLt-~m---pk~iaVvDIDERli~fi~k~aee~g----~~~ie~~~~Dl---r~plpe~~~~ 220 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALT-GM---PKRIAVVDIDERLIKFIEKVAEELG----YNNIEAFVFDL---RNPLPEDLKR 220 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhc-CC---CceEEEEechHHHHHHHHHHHHHhC----ccchhheeehh---cccChHHHHh
Confidence 56788888 333333443332 22 3689999999999999999999988 66777665443 3333332 3
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCC---cEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPG---GLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~i~~~ 220 (267)
.||+.+.++++ ..+....++.+=...||.- |++.++.-
T Consensus 221 kFDvfiTDPpe----------Ti~alk~FlgRGI~tLkg~~~aGyfgiT~r 261 (354)
T COG1568 221 KFDVFITDPPE----------TIKALKLFLGRGIATLKGEGCAGYFGITRR 261 (354)
T ss_pred hCCeeecCchh----------hHHHHHHHHhccHHHhcCCCccceEeeeec
Confidence 79999999644 1123345666666677755 77776654
No 378
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.61 E-value=1.5 Score=37.12 Aligned_cols=118 Identities=10% Similarity=0.077 Sum_probs=62.2
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c--
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I-- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~-- 167 (267)
.++++|-.|.++ +.++..+|+.+-. -+.+|+.++.++...+..++..++.+ .+.++..|..+... .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~--~G~~v~l~~r~~~~~~~~~~~~~~~~------~~~~~~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRA--LGAELAVTYLNDKARPYVEPLAEELD------APIFLPLDVREPGQLEAVFA 80 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH--cCCEEEEEeCChhhHHHHHHHHHhhc------cceEEecCcCCHHHHHHHHH
Confidence 467899999887 3677777665432 15789888988654333333222211 22334444333221 1
Q ss_pred --CCCCCcEEEEEEeCCCCCCCC--Ccee-echhh-----------HHHHHHHHHhcccCCcEEEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGGD--KSVI-TTSET-----------TKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~d--~~~~-~~~~~-----------~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
......+|+++.|.+..+..+ ..+. ...++ .-.+.+.+...++.+|.++.+.
T Consensus 81 ~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 81 RIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred HHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 111246899999987654211 1111 11111 1233456667777778776543
No 379
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=91.53 E-value=3.7 Score=37.86 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=54.7
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.|.+|+=+|+|. |......++.. +.+|+.+|+++.....+.. .+ +.+. . +.+...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-----Ga~ViV~d~dp~ra~~A~~----~G-------~~v~--~---l~eal~--- 266 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-----GARVIVTEVDPICALQAAM----DG-------FRVM--T---MEEAAE--- 266 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-----CCEEEEEcCCchhhHHHHh----cC-------CEec--C---HHHHHh---
Confidence 688999999987 66666666665 4689999999876544432 12 1111 1 122221
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHH-HHHhcccCCcEEEEEEe
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALE-AAERILIPGGLISMVVY 220 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~-~~~~~LkpgG~l~i~~~ 220 (267)
..|+++...+. ..++. ...+.+|+|++++....
T Consensus 267 ~aDVVI~aTG~---------------~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 267 LGDIFVTATGN---------------KDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CCCEEEECCCC---------------HHHHHHHHHhcCCCCCEEEEcCC
Confidence 36777665221 34565 67888999998866543
No 380
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=91.43 E-value=1.9 Score=38.02 Aligned_cols=99 Identities=25% Similarity=0.312 Sum_probs=61.5
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC---hhhhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC---HSRMEE 166 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~---~~~l~~ 166 (267)
.+.++.+||-.|+|. |..+..+|+..|. ..|++++.+++..+.+++ .+ . ..++... ...+..
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~----~~v~~~~~~~~~~~~l~~----~g----~--~~~~~~~~~~~~~~~~ 221 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGA----KRVIAVDIDDEKLAVARE----LG----A--DDTINPKEEDVEKVRE 221 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEEcCCHHHHHHHHH----cC----C--CEEecCccccHHHHHH
Confidence 466888999998776 7777888887642 249999988877766643 12 1 1111111 122222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. ....+|+++...+. ...+..+.+.|+++|.++...
T Consensus 222 ~~-~~~~~d~vld~~g~---------------~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 222 LT-EGRGADLVIEAAGS---------------PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred Hh-CCCCCCEEEECCCC---------------HHHHHHHHHHhhcCCEEEEEc
Confidence 22 22247888765211 256788899999999987654
No 381
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.36 E-value=1.7 Score=37.81 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=57.7
Q ss_pred CCCEEEEecCCCC---hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh----
Q 041272 94 KGDTVVDATCGNG---YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---- 166 (267)
Q Consensus 94 ~~~~VLDlGcG~G---~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---- 166 (267)
.|+.||==|.|+| .++..+|++ +++++-.|++++..+...+.+++.| +++....|..+-.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r------g~~~vl~Din~~~~~etv~~~~~~g------~~~~y~cdis~~eei~~~ 104 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR------GAKLVLWDINKQGNEETVKEIRKIG------EAKAYTCDISDREEIYRL 104 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh------CCeEEEEeccccchHHHHHHHHhcC------ceeEEEecCCCHHHHHHH
Confidence 5789999898887 345666666 5789999999999999888888754 44443333333222
Q ss_pred ---cCCCCCcEEEEEEeCCCCCCC
Q 041272 167 ---IVPKSTAVRLVAFNLGYLPGG 187 (267)
Q Consensus 167 ---~~~~~~~~d~ii~~~~~lp~~ 187 (267)
...+-+++|+++.|.+..+..
T Consensus 105 a~~Vk~e~G~V~ILVNNAGI~~~~ 128 (300)
T KOG1201|consen 105 AKKVKKEVGDVDILVNNAGIVTGK 128 (300)
T ss_pred HHHHHHhcCCceEEEeccccccCC
Confidence 223346899999999887665
No 382
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.06 E-value=1.3 Score=40.00 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=56.0
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
++.+|+=+|+|. |..+...+..+| .+|+.+|.+++..+.+.+... ..+.....+..++.+...
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG-----a~V~v~d~~~~~~~~l~~~~g--------~~v~~~~~~~~~l~~~l~--- 229 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG-----ATVTILDINIDRLRQLDAEFG--------GRIHTRYSNAYEIEDAVK--- 229 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC-----CeEEEEECCHHHHHHHHHhcC--------ceeEeccCCHHHHHHHHc---
Confidence 345799999986 777777777663 589999999877665544321 112111122234444332
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
.+|+++...+. |.... +.-+-++..+.+|||++++-+
T Consensus 230 ~aDvVI~a~~~-~g~~~--------p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 230 RADLLIGAVLI-PGAKA--------PKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred cCCEEEEcccc-CCCCC--------CcCcCHHHHhcCCCCCEEEEE
Confidence 46888876422 11100 001225555667999877543
No 383
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=91.02 E-value=3.3 Score=36.00 Aligned_cols=92 Identities=22% Similarity=0.172 Sum_probs=58.9
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
.++++.+||=.|+|. |..+..+|+..| .+|++++.+++..+.+++ + + ...+.... + . .
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G-----~~vi~~~~~~~~~~~~~~-~---g----~~~~~~~~----~---~-~ 210 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALTG-----PDVVLVGRHSEKLALARR-L---G----VETVLPDE----A---E-S 210 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-----CeEEEEcCCHHHHHHHHH-c---C----CcEEeCcc----c---c-c
Confidence 467888999988765 666666777764 579999999988888776 2 2 11110010 0 0 1
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
....+|.++-..+- ...+..+.+.|+++|.++..
T Consensus 211 ~~~~~d~vid~~g~---------------~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 211 EGGGFDVVVEATGS---------------PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred cCCCCCEEEECCCC---------------hHHHHHHHHHhhcCCEEEEE
Confidence 22357777765321 24677888899999999763
No 384
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=91.02 E-value=2 Score=38.75 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=60.9
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccce-EEEe----cChhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV-KLFN----MCHSRM 164 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v-~~~~----~~~~~l 164 (267)
.++++.+||=.|+|. |..++.+|+..|. .+|++++.+++..+.+++ .+ ...+ .... .....+
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~----~~vi~~~~~~~~~~~~~~----~g----~~~~v~~~~~~~~~~~~~v 267 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGA----SKVIAFEISEERRNLAKE----MG----ADYVFNPTKMRDCLSGEKV 267 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEEcCCHHHHHHHHH----cC----CCEEEcccccccccHHHHH
Confidence 567888888888876 6667777877642 379999998876655554 22 1111 0000 001122
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.... .+..+|+++...+ .....+..+.+.|+++|+++...
T Consensus 268 ~~~~-~g~gvDvvld~~g--------------~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 268 MEVT-KGWGADIQVEAAG--------------APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred HHhc-CCCCCCEEEECCC--------------CcHHHHHHHHHHHHcCCEEEEEC
Confidence 2332 2235788876522 11246778888999999997654
No 385
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=90.88 E-value=3.4 Score=36.45 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=59.8
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-hhhhhcC
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEEIV 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~ 168 (267)
.+.++.+||=.|+|. |..+..+|+..+. .+|+++|.++...+.+++ .+ ...-+.....+. ..+....
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G~----~~v~~~~~~~~~~~~~~~----~g---~~~~v~~~~~~~~~~i~~~~ 231 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYSP----SKIIMVDLDDNRLEVAKK----LG---ATHTVNSAKGDAIEQVLELT 231 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEcCCHHHHHHHHH----hC---CCceeccccccHHHHHHHHh
Confidence 456788888888765 6666777777642 578999998877666654 12 000011111111 1222222
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
....+|+++...+. ...++.+.+.|+++|.++...
T Consensus 232 -~~~~~d~vld~~g~---------------~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 232 -DGRGVDVVIEAVGI---------------PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred -CCCCCCEEEECCCC---------------HHHHHHHHHhccCCcEEEEec
Confidence 22357877765211 246788889999999987543
No 386
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=90.84 E-value=2.7 Score=36.82 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=55.4
Q ss_pred CCCEEEEe--cCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhh----hhh
Q 041272 94 KGDTVVDA--TCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSR----MEE 166 (267)
Q Consensus 94 ~~~~VLDl--GcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~----l~~ 166 (267)
.+.++|=+ |+|. |..+..+|+..+ .+|++++.+++..+.+++ .+ .. .++.....+ +.+
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G-----~~vi~~~~~~~~~~~~~~----~g----~~--~~i~~~~~~~~~~v~~ 206 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADG-----IKVINIVRRKEQVDLLKK----IG----AE--YVLNSSDPDFLEDLKE 206 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHH----cC----Cc--EEEECCCccHHHHHHH
Confidence 34444443 6555 777788888764 689999999988877765 22 11 122111112 222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
... ...+|+++-..+. .......+.|++||+++....
T Consensus 207 ~~~-~~~~d~vid~~g~----------------~~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 207 LIA-KLNATIFFDAVGG----------------GLTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred HhC-CCCCcEEEECCCc----------------HHHHHHHHhhCCCCEEEEEEe
Confidence 222 2257887765321 234556788899999977653
No 387
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=90.79 E-value=2.7 Score=37.04 Aligned_cols=100 Identities=20% Similarity=0.259 Sum_probs=59.2
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccc-eEEEecChhhhhhcCC
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL-VKLFNMCHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~-v~~~~~~~~~l~~~~~ 169 (267)
..++.+||-.|+|. |..+..+|+..+. .+|++++-+++..+.+++. + ... +.....+...+.....
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~----~~v~~~~~~~~~~~~~~~~----g----~~~~~~~~~~~~~~~~~~~~ 228 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGA----SLVIASDPNPYRLELAKKM----G----ADVVINPREEDVVEVKSVTD 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC----cEEEEECCCHHHHHHHHHh----C----cceeeCcccccHHHHHHHcC
Confidence 45788888888765 7777888887642 3788888777766655541 2 011 0000101111222222
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...+|+++.+.+. ...+.++.+.|+++|.++...
T Consensus 229 -~~~vd~vld~~g~---------------~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 229 -GTGVDVVLEMSGN---------------PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred -CCCCCEEEECCCC---------------HHHHHHHHHHhccCCEEEEEc
Confidence 2357888776321 256788889999999987654
No 388
>PRK07576 short chain dehydrogenase; Provisional
Probab=90.72 E-value=4.1 Score=34.53 Aligned_cols=82 Identities=11% Similarity=-0.006 Sum_probs=48.0
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh---hc---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME---EI--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~---~~--- 167 (267)
.+.+||-.| |+|.++..+++.+-. .+.+|+.++.+++.++...+.+...+ .++.++..|..+.. ..
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~i~~~~~~ 79 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFAR--AGANVAVASRSQEKVDAAVAQLQQAG-----PEGLGVSADVRDYAAVEAAFAQ 79 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhC-----CceEEEECCCCCHHHHHHHHHH
Confidence 466888887 566667666655432 25689999999887665555444322 34455554443322 11
Q ss_pred -CCCCCcEEEEEEeCCC
Q 041272 168 -VPKSTAVRLVAFNLGY 183 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~ 183 (267)
......+|.++.+.+.
T Consensus 80 ~~~~~~~iD~vi~~ag~ 96 (264)
T PRK07576 80 IADEFGPIDVLVSGAAG 96 (264)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 1112357999888653
No 389
>PRK07326 short chain dehydrogenase; Provisional
Probab=90.69 E-value=1.9 Score=35.66 Aligned_cols=81 Identities=14% Similarity=0.064 Sum_probs=48.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cCC-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IVP- 169 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~~- 169 (267)
.+.+||-.| |+|.++..+++++-. .+.+|++++.++.......+.+... .++.++..|..+... ...
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~--~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~D~~~~~~~~~~~~~ 75 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLA--EGYKVAITARDQKELEEAAAELNNK------GNVLGLAADVRDEADVQRAVDA 75 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHH--CCCEEEEeeCCHHHHHHHHHHHhcc------CcEEEEEccCCCHHHHHHHHHH
Confidence 357888888 577787777765532 1568999999987666555544321 345555555443322 111
Q ss_pred ---CCCcEEEEEEeCCC
Q 041272 170 ---KSTAVRLVAFNLGY 183 (267)
Q Consensus 170 ---~~~~~d~ii~~~~~ 183 (267)
....+|.++.+.+.
T Consensus 76 ~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 76 IVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 11257888887654
No 390
>PRK07806 short chain dehydrogenase; Provisional
Probab=90.64 E-value=8.8 Score=31.89 Aligned_cols=116 Identities=11% Similarity=0.039 Sum_probs=61.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChH-HHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE-ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~-~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
+.++|-.|+. |.++..+++.+-. .+.+|++++.+.. ..+.....++..+ .++.++..|..+.... .
T Consensus 6 ~k~vlItGas-ggiG~~l~~~l~~--~G~~V~~~~r~~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 6 GKTALVTGSS-RGIGADTAKILAG--AGAHVVVNYRQKAPRANKVVAEIEAAG-----GRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CcEEEEECCC-CcHHHHHHHHHHH--CCCEEEEEeCCchHhHHHHHHHHHhcC-----CceEEEEcCCCCHHHHHHHHHH
Confidence 5688888854 5566666655432 1568999887643 3333333333322 3455555555443321 1
Q ss_pred --CCCCcEEEEEEeCCCCCCCC----CceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 169 --PKSTAVRLVAFNLGYLPGGD----KSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp~~d----~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
.....+|.++.+.+.....+ ..+.........+++.+.+.++.+|.++++
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 78 AREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 11125788888875432211 111123334456777777777666766554
No 391
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.61 E-value=1.9 Score=37.45 Aligned_cols=98 Identities=16% Similarity=0.080 Sum_probs=53.2
Q ss_pred EEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccc-------------cccceEEEecCh
Q 041272 97 TVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKA-------------EKGLVKLFNMCH 161 (267)
Q Consensus 97 ~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~-------------~~~~v~~~~~~~ 161 (267)
+|.=||+|. | .++..+++. +.+|+.+|.+++.++.++++........ ...++.+..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~--- 73 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSL--- 73 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC---
Confidence 566777764 2 233333333 4689999999999998876543211000 011222221
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
++.+.. .+.|+|+...+. .......++.++.+.++|+.++.+
T Consensus 74 -~~~~~~---~~aD~Vi~avpe----------~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 74 -DLKAAV---ADADLVIEAVPE----------KLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred -cHHHhh---cCCCEEEEeccC----------CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 121111 146778776321 123345677888888888776543
No 392
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.58 E-value=3 Score=34.43 Aligned_cols=118 Identities=17% Similarity=0.077 Sum_probs=63.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---CC-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---VP- 169 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~~- 169 (267)
.+.+||-.|++ |.++..+++.+-. .+.+|++++.+++..+...+.+... .++.++..|..+.... ..
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALK--EGAQVCINSRNENKLKRMKKTLSKY------GNIHYVVGDVSSTESARNVIEK 74 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEECCCCCHHHHHHHHHH
Confidence 35689999985 5566666655422 1579999999988766554444332 2455555544432211 10
Q ss_pred ---CCCcEEEEEEeCCCCCCCCC-ce-------eechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 ---KSTAVRLVAFNLGYLPGGDK-SV-------ITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ---~~~~~d~ii~~~~~lp~~d~-~~-------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....+|.++.+.+....... .. ..........++.+.+.++++|.++++..
T Consensus 75 ~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 75 AAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred HHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 01246888877654221100 00 00011123345666677788887776553
No 393
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=90.32 E-value=1 Score=35.56 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcccCCcEEEEEEecCC
Q 041272 198 TKMALEAAERILIPGGLISMVVYVGH 223 (267)
Q Consensus 198 ~~~~l~~~~~~LkpgG~l~i~~~~~~ 223 (267)
..+.+.++.++|||||.+++..+.+.
T Consensus 90 dl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 90 DLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred cHHHHHHHHHhhccCCeEEEEeecCC
Confidence 36788899999999999999888764
No 394
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=90.29 E-value=0.24 Score=42.59 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=32.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHH
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALK 136 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~ 136 (267)
..+++|||+|||.|...+.+.... ...++..|++.+.++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-----~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-----AVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-----cceeeeEecchhhee
Confidence 478899999999999998888652 368889999888773
No 395
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.24 E-value=2.9 Score=33.85 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=49.0
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc---cccc------cccceEEEecChhhhhhc
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT---TSKA------EKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~---~~~~------~~~~v~~~~~~~~~l~~~ 167 (267)
+|-=+|.|- .++.+|..+-. -+.+|+|+|++++.++..++-..-. +... ...++.+...-...+.
T Consensus 2 ~I~ViGlGy--vGl~~A~~lA~--~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~-- 75 (185)
T PF03721_consen 2 KIAVIGLGY--VGLPLAAALAE--KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK-- 75 (185)
T ss_dssp EEEEE--ST--THHHHHHHHHH--TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--
T ss_pred EEEEECCCc--chHHHHHHHHh--CCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--
Confidence 455566554 44333332211 0469999999999887765421110 0000 0234444322111121
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
..|+++...+-....+.. .......++++.+.+.|++|-.+++-
T Consensus 76 -----~adv~~I~VpTP~~~~~~--~Dls~v~~a~~~i~~~l~~~~lvV~~ 119 (185)
T PF03721_consen 76 -----DADVVFICVPTPSDEDGS--PDLSYVESAIESIAPVLRPGDLVVIE 119 (185)
T ss_dssp -----H-SEEEE----EBETTTS--BETHHHHHHHHHHHHHHCSCEEEEES
T ss_pred -----ccceEEEecCCCccccCC--ccHHHHHHHHHHHHHHHhhcceEEEc
Confidence 345555553321112111 12344578899999999997766553
No 396
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=90.12 E-value=2.2 Score=37.73 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=60.2
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhhhhc
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRMEEI 167 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~ 167 (267)
.++.+||-.|+|. |..+..+|+..|. .+|+.++.+++..+.+++ + + .. .++.... ..+...
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~----~~v~~~~~~~~~~~~~~~-~---g----~~--~~~~~~~~~~~~~~~~~ 239 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGP----ANIIVVDIDEAKLEAAKA-A---G----AD--VVVNGSDPDAAKRIIKA 239 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC----CeEEEEeCCHHHHHHHHH-h---C----Cc--EEecCCCccHHHHHHHH
Confidence 4678899988775 7777888887642 479999988887777643 2 2 00 1121111 112222
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. . .+|+++...+. ...+..+.+.|+++|+++...
T Consensus 240 ~~-~-~~d~vid~~g~---------------~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 240 AG-G-GVDAVIDFVNN---------------SATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred hC-C-CCcEEEECCCC---------------HHHHHHHHHHhhcCCeEEEEC
Confidence 22 2 57888765321 256888899999999987543
No 397
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=90.06 E-value=3 Score=36.79 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=58.6
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcE-EEEEeCChHHHHHHHHHHhhccccccccc-eEEEecCh-hhhhhc
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKTTSKAEKGL-VKLFNMCH-SRMEEI 167 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~-v~giD~s~~~i~~a~~~~~~~~~~~~~~~-v~~~~~~~-~~l~~~ 167 (267)
+.++.+||-.|+|. |..+..+|+..| .+ |++++.+++..+.+++. + ... +.....+. ..+...
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G-----~~~v~~~~~~~~~~~~~~~~----g----~~~~v~~~~~~~~~~l~~~ 225 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASG-----AYPVIVSDPNEYRLELAKKM----G----ATYVVNPFKEDVVKEVADL 225 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-----CcEEEEECCCHHHHHHHHHh----C----CcEEEcccccCHHHHHHHh
Confidence 46788888877764 667777888764 44 88898888776666542 2 011 11111111 112222
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
. ....+|+++...+- ...+..+.+.|+++|.++....
T Consensus 226 ~-~~~~~d~vld~~g~---------------~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 226 T-DGEGVDVFLEMSGA---------------PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred c-CCCCCCEEEECCCC---------------HHHHHHHHHhhcCCCEEEEEcc
Confidence 2 22357777765211 2567888999999999876543
No 398
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=90.02 E-value=3.4 Score=36.93 Aligned_cols=98 Identities=23% Similarity=0.335 Sum_probs=59.0
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhhhh
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRMEE 166 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l~~ 166 (267)
+.++.+||=.|+|. |..+..+|+..+. ..|++++.+++..+.+++ + + . -.++.... ..+..
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G~----~~vi~~~~s~~~~~~~~~-~---g----~--~~v~~~~~~~~~~~l~~ 250 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFGA----SPIIAVDVRDEKLAKAKE-L---G----A--THTVNAAKEDAVAAIRE 250 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC----CeEEEEeCCHHHHHHHHH-h---C----C--ceEecCCcccHHHHHHH
Confidence 46788888777764 6777777877642 349999998887776643 1 2 0 11111111 11222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. .+..+|+++...+- ...++.+.+.|+++|.++...
T Consensus 251 ~~-~~~~~d~vld~vg~---------------~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 251 IT-GGRGVDVVVEALGK---------------PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred Hh-CCCCCCEEEEeCCC---------------HHHHHHHHHHHhcCCEEEEEc
Confidence 22 22358888765321 136788889999999987654
No 399
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=89.93 E-value=2.4 Score=37.31 Aligned_cols=100 Identities=17% Similarity=0.096 Sum_probs=59.7
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccce-EEEecCh-hhhhhcCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLV-KLFNMCH-SRMEEIVP 169 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v-~~~~~~~-~~l~~~~~ 169 (267)
.++++||-.|+|. |..+..+|+..+. .+|+.++.+++..+.+++. + ...+ .....+. ..+....
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~----~~v~~~~~~~~~~~~~~~l----g----~~~~~~~~~~~~~~~~~~~~- 228 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGA----RHVVITDVNEYRLELARKM----G----ATRAVNVAKEDLRDVMAELG- 228 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCC----CEEEEEcCCHHHHHHHHHh----C----CcEEecCccccHHHHHHHhc-
Confidence 4678888888776 7777888887642 3688888888777665542 2 0110 0001111 1122222
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
....+|+++...+. ...+..+.+.|+++|.++....
T Consensus 229 ~~~~~d~v~d~~g~---------------~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 229 MTEGFDVGLEMSGA---------------PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CCCCCCEEEECCCC---------------HHHHHHHHHHHhcCCEEEEEec
Confidence 22357777764321 3577888999999999977654
No 400
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=89.88 E-value=5.3 Score=35.15 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=58.6
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
.+.++.+||=.|||. |..+..+++.. +.+|+.++.+++..+.+++ + + .. .++.....+.....
T Consensus 166 ~~~~g~~vlV~g~g~vG~~~~~~a~~~-----G~~v~~~~~~~~~~~~~~~-~---g----~~--~vi~~~~~~~~~~~- 229 (337)
T cd05283 166 GVGPGKRVGVVGIGGLGHLAVKFAKAL-----GAEVTAFSRSPSKKEDALK-L---G----AD--EFIATKDPEAMKKA- 229 (337)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-----CCeEEEEcCCHHHHHHHHH-c---C----Cc--EEecCcchhhhhhc-
Confidence 356788888788765 66777777775 3689999999887777753 1 1 01 11111111111111
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...+|+++...+. ...+..+.+.|+++|.++...
T Consensus 230 -~~~~d~v~~~~g~---------------~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 230 -AGSLDLIIDTVSA---------------SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred -cCCceEEEECCCC---------------cchHHHHHHHhcCCCEEEEEe
Confidence 2357887765321 124677888999999887654
No 401
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=89.85 E-value=4.2 Score=36.31 Aligned_cols=99 Identities=18% Similarity=0.278 Sum_probs=60.7
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l~ 165 (267)
.+.++.+||-.|+|. |..+..+++..|. .+|++++.+++..+.+++ + + . -.++.... ..+.
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G~----~~Vi~~~~~~~~~~~~~~-~---g----~--~~vv~~~~~~~~~~l~ 244 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGA----SRIIAVDPVPEKLELARR-F---G----A--THTVNASEDDAVEAVR 244 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CcEEEEcCCHHHHHHHHH-h---C----C--eEEeCCCCccHHHHHH
Confidence 466788999988864 7777888887642 359999988887766643 1 2 0 11121111 1222
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
... +...+|+++...+- ...+..+.+.|+++|+++...
T Consensus 245 ~~~-~~~~vd~vld~~~~---------------~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 245 DLT-DGRGADYAFEAVGR---------------AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred HHc-CCCCCCEEEEcCCC---------------hHHHHHHHHHhhcCCeEEEEe
Confidence 222 22357877765211 256788899999999987654
No 402
>PRK05854 short chain dehydrogenase; Provisional
Probab=89.77 E-value=6.4 Score=34.48 Aligned_cols=84 Identities=12% Similarity=0.088 Sum_probs=52.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------- 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------- 167 (267)
+.++|=.|++. .++..+++.+-. .+.+|+.++.+++..+.+.+.+.... ...++.++..|..+....
T Consensus 14 gk~~lITGas~-GIG~~~a~~La~--~G~~Vil~~R~~~~~~~~~~~l~~~~---~~~~v~~~~~Dl~d~~sv~~~~~~~ 87 (313)
T PRK05854 14 GKRAVVTGASD-GLGLGLARRLAA--AGAEVILPVRNRAKGEAAVAAIRTAV---PDAKLSLRALDLSSLASVAALGEQL 87 (313)
T ss_pred CCEEEEeCCCC-hHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhC---CCCceEEEEecCCCHHHHHHHHHHH
Confidence 56788777755 455555554422 15799999999887776666654432 123566666666554331
Q ss_pred CCCCCcEEEEEEeCCCC
Q 041272 168 VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~l 184 (267)
......+|+++.|.+..
T Consensus 88 ~~~~~~iD~li~nAG~~ 104 (313)
T PRK05854 88 RAEGRPIHLLINNAGVM 104 (313)
T ss_pred HHhCCCccEEEECCccc
Confidence 11224689999998764
No 403
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=89.65 E-value=4.4 Score=36.58 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=35.5
Q ss_pred hcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 91 VVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
.++++.+||=.|+ |. |..+..+|+..+ .+++.++.+++..+.+++
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G-----~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAG-----ANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcC-----CeEEEEeCCHHHHHHHHH
Confidence 4667889999997 43 777788888764 678889999988888865
No 404
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.63 E-value=2.7 Score=37.22 Aligned_cols=97 Identities=13% Similarity=0.036 Sum_probs=58.7
Q ss_pred CEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-------cc--cccccceEEEecChhhh
Q 041272 96 DTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-------TS--KAEKGLVKLFNMCHSRM 164 (267)
Q Consensus 96 ~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-------~~--~~~~~~v~~~~~~~~~l 164 (267)
.+|-=||+|+ ..++..++.. +.+|+.+|.+++.++.+++.+... +. .....++++.. ++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~----~l 77 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA----TI 77 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC----CH
Confidence 4788888885 3444445543 579999999999888776655421 10 00112333321 22
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
.+.. ...|+|+-+. ....+.+..+++++-+.++|+-+|
T Consensus 78 ~~av---~~aDlViEav----------pE~l~vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 78 EACV---ADADFIQESA----------PEREALKLELHERISRAAKPDAII 115 (321)
T ss_pred HHHh---cCCCEEEECC----------cCCHHHHHHHHHHHHHhCCCCeEE
Confidence 2221 2467888773 223455678899999999998744
No 405
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.51 E-value=6.6 Score=32.49 Aligned_cols=82 Identities=16% Similarity=0.041 Sum_probs=50.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC---
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV--- 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~--- 168 (267)
+.++|-.| |+|.++..+++++-. .+.+|+.++.++...+...+.+...+ .++.++..|..+... ..
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~--~G~~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAK--EGVNVGLLARTEENLKAVAEEVEAYG-----VKVVIATADVSDYEEVTAAIEQL 78 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhC-----CeEEEEECCCCCHHHHHHHHHHH
Confidence 46788888 477788877765432 25799999999876665554444322 456666655443322 11
Q ss_pred -CCCCcEEEEEEeCCCC
Q 041272 169 -PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 -~~~~~~d~ii~~~~~l 184 (267)
.....+|.++.+.+..
T Consensus 79 ~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 79 KNELGSIDILINNAGIS 95 (239)
T ss_pred HHHcCCccEEEEcCccc
Confidence 1113589999887653
No 406
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.50 E-value=0.79 Score=41.15 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=60.6
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.+|++|+|..|-.|.-|..+|..+.. .++++|+|.++.-.+..++.+...| ...++.+.+|.... ..+..-.
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n---~gki~afe~d~~r~~tl~~~l~~ag----~~~~~~~~~df~~t-~~~~~~~ 283 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRN---QGKIYAFERDAKRAATLRKLLKIAG----VSIVESVEGDFLNT-ATPEKFR 283 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhc---cCCcchhhhhhHHHHHHHHHHHHcC----CCccccccccccCC-CCccccc
Confidence 46789999999999999999988754 6899999999999999999998877 45555555444332 1222222
Q ss_pred cEEEEEEeCC
Q 041272 173 AVRLVAFNLG 182 (267)
Q Consensus 173 ~~d~ii~~~~ 182 (267)
.+-.++.+++
T Consensus 284 ~v~~iL~Dps 293 (413)
T KOG2360|consen 284 DVTYILVDPS 293 (413)
T ss_pred ceeEEEeCCC
Confidence 4667777753
No 407
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.48 E-value=3.4 Score=35.45 Aligned_cols=118 Identities=10% Similarity=0.080 Sum_probs=61.3
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c--
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I-- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~-- 167 (267)
.++.||=.|.++ +.++..+|+.+-. -+.+|+.++.++...+..++...+.+ .. ..+..|..+... .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~--~G~~Vil~~r~~~~~~~~~~~~~~~~-----~~-~~~~~Dv~d~~~v~~~~~ 75 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFE--QGAELAFTYLNEALKKRVEPIAQELG-----SD-YVYELDVSKPEHFKSLAE 75 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHH--CCCEEEEEecCHHHHHHHHHHHHhcC-----Cc-eEEEecCCCHHHHHHHHH
Confidence 367888889863 5566666665432 15789999988643233333222222 12 234444443322 1
Q ss_pred --CCCCCcEEEEEEeCCCCCCC--CCceee-ch-----------hhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGG--DKSVIT-TS-----------ETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~--d~~~~~-~~-----------~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
......+|+++.|.+..+.. ...+.. .. ..+-.+.+.+...++.+|.++.+.
T Consensus 76 ~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 76 SLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred HHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 11224689999998875321 011111 11 112334556667777778766543
No 408
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.46 E-value=3.8 Score=35.50 Aligned_cols=97 Identities=20% Similarity=0.136 Sum_probs=54.6
Q ss_pred CEEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc--------------ccccceEEEec
Q 041272 96 DTVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK--------------AEKGLVKLFNM 159 (267)
Q Consensus 96 ~~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~--------------~~~~~v~~~~~ 159 (267)
.+|.=||+|. | .++..+++. +.+|+.+|.+++.++.+++++++.... ....++.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-- 75 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-- 75 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe--
Confidence 3677788875 2 233333332 468999999999999888765332100 001233322
Q ss_pred ChhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 160 CHSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 160 ~~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
.++.+.. ...|+|+...+ ...+....+++++...++++-++
T Consensus 76 --~d~~~a~---~~aDlVieavp----------e~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 76 --TDLAEAV---KDADLVIEAVP----------EDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred --CCHHHHh---cCCCEEEEecc----------CCHHHHHHHHHHHHhhCCCCCEE
Confidence 1222211 14677877732 12334567788888887777655
No 409
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.44 E-value=6.4 Score=33.31 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=61.1
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCCh---HHHHHHHHHHhhccccccccceEEEecChhhhhh---
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQS---EALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE--- 166 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~---~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~--- 166 (267)
.++++|-.|.++ +.++..+|+.+-. .+.+|+.++.+. +.++...+.++ ..++.++..|..+...
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~--~G~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~ 76 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHN--AGAKLVFTYAGERLEKEVRELADTLE-------GQESLLLPCDVTSDEEITA 76 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH--CCCEEEEecCcccchHHHHHHHHHcC-------CCceEEEecCCCCHHHHHH
Confidence 367899999873 6677777765533 157888887653 23333322211 1345555544443322
Q ss_pred c----CCCCCcEEEEEEeCCCCCCCC--Ccee-echhh-----------HHHHHHHHHhcccCCcEEEEEE
Q 041272 167 I----VPKSTAVRLVAFNLGYLPGGD--KSVI-TTSET-----------TKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 167 ~----~~~~~~~d~ii~~~~~lp~~d--~~~~-~~~~~-----------~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
. ...-..+|+++.|.+..+..+ ..+. ...+. .-...+.+.+.++++|.++.+.
T Consensus 77 ~~~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 77 CFETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred HHHHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 1 112246899999887643210 1111 11111 1223456667777788776543
No 410
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.29 E-value=6.4 Score=34.60 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=60.3
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l~ 165 (267)
.++++.+||=.|||. |..+..+|+..|. ..+++++.+++..+.+++ .+ . -.++.... ..+.
T Consensus 165 ~~~~g~~vlI~g~g~vg~~~~~lak~~G~----~~v~~~~~~~~~~~~~~~----~g----a--~~v~~~~~~~~~~~i~ 230 (345)
T cd08287 165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGA----ERIIAMSRHEDRQALARE----FG----A--TDIVAERGEEAVARVR 230 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHH----cC----C--ceEecCCcccHHHHHH
Confidence 456788887788876 7777888888643 358999988765555543 22 0 11111111 1122
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
... .+..+|.++...+- ...+..+.+.|+++|.++....
T Consensus 231 ~~~-~~~~~d~il~~~g~---------------~~~~~~~~~~l~~~g~~v~~g~ 269 (345)
T cd08287 231 ELT-GGVGADAVLECVGT---------------QESMEQAIAIARPGGRVGYVGV 269 (345)
T ss_pred Hhc-CCCCCCEEEECCCC---------------HHHHHHHHHhhccCCEEEEecc
Confidence 222 22346777654211 3578888999999999976543
No 411
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=89.23 E-value=0.19 Score=41.61 Aligned_cols=84 Identities=23% Similarity=0.192 Sum_probs=59.2
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC---
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV--- 168 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~--- 168 (267)
..++.+.+|.--|.|..+..+.+... ..+++++|.+|.+-+.|+-...+.- .+++..+.+...++..++
T Consensus 41 pv~g~sf~DmTfGagGHt~~ilqk~s----e~k~yalDrDP~A~~La~~~s~el~----~~~l~a~Lg~Fs~~~~l~~~~ 112 (303)
T KOG2782|consen 41 PVRGRSFVDMTFGAGGHTSSILQKHS----ELKNYALDRDPVARKLAHFHSDELM----HPTLKAVLGNFSYIKSLIADT 112 (303)
T ss_pred CCCCceEEEEeccCCcchHHHHHhCc----HhhhhhhccChHHHHHHHHhhHhhc----chhHHHHHhhhHHHHHHHHHh
Confidence 34788999999999999999998865 4899999999999888887664321 223333333344443322
Q ss_pred -CCCCcEEEEEEeCCC
Q 041272 169 -PKSTAVRLVAFNLGY 183 (267)
Q Consensus 169 -~~~~~~d~ii~~~~~ 183 (267)
-.+..+|-++++++.
T Consensus 113 gl~~~~vDGiLmDlGc 128 (303)
T KOG2782|consen 113 GLLDVGVDGILMDLGC 128 (303)
T ss_pred CCCcCCcceEEeecCc
Confidence 224478999888765
No 412
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=89.19 E-value=8.1 Score=33.67 Aligned_cols=92 Identities=11% Similarity=0.027 Sum_probs=56.4
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
.++++.+||=.|||. |..+..+++.. +.+|+.++.+++..+.+++ .+ .. ..+... ..
T Consensus 164 ~~~~~~~vlV~g~g~vg~~~~~la~~~-----g~~v~~~~~~~~~~~~~~~----~g----~~--~~~~~~-~~------ 221 (329)
T cd08298 164 GLKPGQRLGLYGFGASAHLALQIARYQ-----GAEVFAFTRSGEHQELARE----LG----AD--WAGDSD-DL------ 221 (329)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC-----CCeEEEEcCChHHHHHHHH----hC----Cc--EEeccC-cc------
Confidence 466788888888775 55666677765 4689999988876666643 12 00 111100 00
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
....+|.++...+ ....++++.+.|+++|.++...
T Consensus 222 ~~~~vD~vi~~~~---------------~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 222 PPEPLDAAIIFAP---------------VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred CCCcccEEEEcCC---------------cHHHHHHHHHHhhcCCEEEEEc
Confidence 1224666654311 0257888999999999998654
No 413
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=89.19 E-value=13 Score=31.66 Aligned_cols=128 Identities=11% Similarity=0.079 Sum_probs=84.0
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh-hhhhcCCC
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS-RMEEIVPK 170 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~~ 170 (267)
++++.+ |...||+=.++..+.+. .-++.++|+-++-...-++++.. ..++.+..+|.- .+...+++
T Consensus 87 lN~~~~-l~~YpGSP~lA~~llR~------qDRl~l~ELHp~D~~~L~~~f~~------d~~vrv~~~DG~~~l~a~LPP 153 (279)
T COG2961 87 LNPGGG-LRYYPGSPLLARQLLRE------QDRLVLTELHPSDAPLLRNNFAG------DRRVRVLRGDGFLALKAHLPP 153 (279)
T ss_pred hCCCCC-cccCCCCHHHHHHHcch------hceeeeeecCccHHHHHHHHhCC------CcceEEEecCcHHHHhhhCCC
Confidence 455555 89999999998888865 35899999999988888888874 567888776554 45556666
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEecCCCCChhhHHHHHHHHHhCCCCce
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYVGHPGGREELEAVEAFARSLSVDDW 245 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 245 (267)
...=-+|+.+++|=- -...+...+.+++.++. =++|...|--+. ...+.++.+.+.++..+.
T Consensus 154 ~erRglVLIDPPfE~------~~eY~rvv~~l~~~~kR-f~~g~yaiWYPi------k~r~~~~~f~~~L~~~~i 215 (279)
T COG2961 154 KERRGLVLIDPPFEL------KDEYQRVVEALAEAYKR-FATGTYAIWYPI------KDRRQIRRFLRALEALGI 215 (279)
T ss_pred CCcceEEEeCCCccc------ccHHHHHHHHHHHHHHh-hcCceEEEEEee------cchHHHHHHHHHHhhcCc
Confidence 555668888865511 11233334455555554 367777553331 245666777776665544
No 414
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=89.17 E-value=3.3 Score=39.59 Aligned_cols=90 Identities=10% Similarity=0.011 Sum_probs=53.1
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc----ccccceEEEecChhhhhhc
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK----AEKGLVKLFNMCHSRMEEI 167 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~----~~~~~v~~~~~~~~~l~~~ 167 (267)
.+.|.+||-.|+ +|.++..+++++-. .+.+|++++.+++.++...+.+...... ....++.++.+|..+....
T Consensus 77 ~~~gKvVLVTGA-TGgIG~aLAr~LLk--~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 77 TKDEDLAFVAGA-TGKVGSRTVRELLK--LGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cCCCCEEEEECC-CCHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 456778887775 56777777765532 1578999999987766554433321100 0013577777776654443
Q ss_pred CCCCCcEEEEEEeCCCC
Q 041272 168 VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~l 184 (267)
...-..+|++|.+.+..
T Consensus 154 ~~aLggiDiVVn~AG~~ 170 (576)
T PLN03209 154 GPALGNASVVICCIGAS 170 (576)
T ss_pred HHHhcCCCEEEEccccc
Confidence 21112578888887653
No 415
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.15 E-value=3.8 Score=35.83 Aligned_cols=89 Identities=18% Similarity=0.160 Sum_probs=53.6
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.+.+|+=+|.|. |......++.. +.+|+.+|.+++..+.++. .+ .+++. ..++.+...
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-----Ga~V~v~~r~~~~~~~~~~----~G-------~~~~~--~~~l~~~l~--- 209 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-----GANVTVGARKSAHLARITE----MG-------LSPFH--LSELAEEVG--- 209 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-----CCEEEEEECCHHHHHHHHH----cC-------Ceeec--HHHHHHHhC---
Confidence 578999999986 44445555554 4699999999876555543 22 12221 123333332
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
.+|+|+...+. .-+-+++.+.++||++++-.
T Consensus 210 ~aDiVI~t~p~---------------~~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 210 KIDIIFNTIPA---------------LVLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred CCCEEEECCCh---------------hhhhHHHHHcCCCCcEEEEE
Confidence 47888876421 12335667788998877533
No 416
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.04 E-value=5.5 Score=35.17 Aligned_cols=116 Identities=15% Similarity=0.061 Sum_probs=58.7
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
+.+.+|.=+|+|. |.....++...+- ..+++-+|++++.++--..-+..... ...++.+..++.+++.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~---~~el~L~D~~~~~~~g~~~Dl~~~~~--~~~~~~i~~~~~~~~~------ 72 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGI---ADELVIIDINKEKAEGDAMDLSHAVP--FTSPTKIYAGDYSDCK------ 72 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCC---CCEEEEEeCCCchhHHHHHHHHhhcc--ccCCeEEEeCCHHHhC------
Confidence 3467999999977 5555554433332 24799999988764333332322110 1123444433333322
Q ss_pred CcEEEEEEeCCCCCCCCCceee----chhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVIT----TSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
..|+++...+....+...-.. ..+-..++.+++.+. .|.|++++...+
T Consensus 73 -~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~vivvsNP 124 (315)
T PRK00066 73 -DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLVASNP 124 (315)
T ss_pred -CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCc
Confidence 467777776653322111111 111123333333333 589999887654
No 417
>PLN02702 L-idonate 5-dehydrogenase
Probab=88.96 E-value=3.8 Score=36.53 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=61.0
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe---cCh-hhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN---MCH-SRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~---~~~-~~l~ 165 (267)
.+.++.+||=+|+|. |..+..+|+..+. ..|+++|.+++..+.+++. + ...+..+. .+. ..+.
T Consensus 178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~----~~v~~~~~~~~~~~~~~~~----g----~~~~~~~~~~~~~~~~~~~ 245 (364)
T PLN02702 178 NIGPETNVLVMGAGPIGLVTMLAARAFGA----PRIVIVDVDDERLSVAKQL----G----ADEIVLVSTNIEDVESEVE 245 (364)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHHh----C----CCEEEecCcccccHHHHHH
Confidence 456788999888764 7777888887653 4689999988777766542 1 01111110 011 1111
Q ss_pred hcC-CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIV-PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~-~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
... .....+|+++...+. ...+..+.+.|+++|+++...
T Consensus 246 ~~~~~~~~~~d~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 246 EIQKAMGGGIDVSFDCVGF---------------NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred HHhhhcCCCCCEEEECCCC---------------HHHHHHHHHHHhcCCEEEEEc
Confidence 110 012257777765321 256888899999999987654
No 418
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=88.84 E-value=1.2 Score=38.16 Aligned_cols=43 Identities=14% Similarity=0.181 Sum_probs=33.5
Q ss_pred hcCCCCEEEEecCCCChHHHHHHHhcCCC-CCCcEEEEEeCChH
Q 041272 91 VVRKGDTVVDATCGNGYDTLMMLKMVADE-SSAGCVYGLDIQSE 133 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~G~~~~~la~~~~~~-~p~~~v~giD~s~~ 133 (267)
.+.++..++|+|||.|.++..+++.++.. .+...++.||....
T Consensus 15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 45678899999999999999999987420 02468999998654
No 419
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.83 E-value=6.4 Score=33.52 Aligned_cols=85 Identities=6% Similarity=-0.009 Sum_probs=45.8
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh---hc--
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME---EI-- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~---~~-- 167 (267)
.+.++|=.|.++ +.++..+|+.+-. .+.+|+.++.+....+.+++..... ..+.++..|..+.. ..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~--~G~~vil~~r~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~v~~~~~ 76 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHR--EGAELAFTYQNDKLKGRVEEFAAQL------GSDIVLPCDVAEDASIDAMFA 76 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHH--CCCEEEEEecchhHHHHHHHHHhcc------CCceEeecCCCCHHHHHHHHH
Confidence 356888889876 3666666655432 1578988887743223332222221 22334444444322 11
Q ss_pred --CCCCCcEEEEEEeCCCCCC
Q 041272 168 --VPKSTAVRLVAFNLGYLPG 186 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~ 186 (267)
......+|+++.|.+..+.
T Consensus 77 ~~~~~~g~iD~linnAg~~~~ 97 (262)
T PRK07984 77 ELGKVWPKFDGFVHSIGFAPG 97 (262)
T ss_pred HHHhhcCCCCEEEECCccCCc
Confidence 1112368999999887543
No 420
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.65 E-value=2.9 Score=36.33 Aligned_cols=97 Identities=10% Similarity=0.153 Sum_probs=58.5
Q ss_pred CEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhcccc-------------ccccceEEEecC
Q 041272 96 DTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSK-------------AEKGLVKLFNMC 160 (267)
Q Consensus 96 ~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~-------------~~~~~v~~~~~~ 160 (267)
.+|-=||+|+ +.++..++.. +.+|+.+|.+++.++.+++++.+.-.. ....++++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~--- 76 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFT--- 76 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEee---
Confidence 3777888885 3444445544 579999999999999888775542100 001222222
Q ss_pred hhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcc-cCCcEEE
Q 041272 161 HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERIL-IPGGLIS 216 (267)
Q Consensus 161 ~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~L-kpgG~l~ 216 (267)
.++... ...|+|+-. +....+...+++.++-+.+ +|+.++.
T Consensus 77 -~~~~~~----~~~d~ViEa----------v~E~~~~K~~l~~~l~~~~~~~~~il~ 118 (286)
T PRK07819 77 -TDLGDF----ADRQLVIEA----------VVEDEAVKTEIFAELDKVVTDPDAVLA 118 (286)
T ss_pred -CCHHHh----CCCCEEEEe----------cccCHHHHHHHHHHHHHhhCCCCcEEE
Confidence 122111 246777776 2334556678888888888 6776663
No 421
>PRK08589 short chain dehydrogenase; Validated
Probab=88.63 E-value=9.2 Score=32.53 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=46.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.++++|=.|++.| ++..+++.+-. .+.+|+.++.+ +.++...+.+++.+ .++.++..|..+... .
T Consensus 5 ~~k~vlItGas~g-IG~aia~~l~~--~G~~vi~~~r~-~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 5 ENKVAVITGASTG-IGQASAIALAQ--EGAYVLAVDIA-EAVSETVDKIKSNG-----GKAKAYHVDISDEQQVKDFASE 75 (272)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHH--CCCEEEEEeCc-HHHHHHHHHHHhcC-----CeEEEEEeecCCHHHHHHHHHH
Confidence 3567887776654 55555554422 15799999998 44554444444322 345555544443221 1
Q ss_pred -CCCCCcEEEEEEeCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp 185 (267)
......+|+++.+.+...
T Consensus 76 ~~~~~g~id~li~~Ag~~~ 94 (272)
T PRK08589 76 IKEQFGRVDVLFNNAGVDN 94 (272)
T ss_pred HHHHcCCcCEEEECCCCCC
Confidence 111235899999987643
No 422
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=88.59 E-value=7.7 Score=34.08 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=56.5
Q ss_pred hcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-c
Q 041272 91 VVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-I 167 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-~ 167 (267)
.+.++.+||=.|+ |. |..+..+|+..+ +++++++.+. ..+.++ ..+ .. .+.......... .
T Consensus 174 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g-----~~vi~~~~~~-~~~~~~----~~g----~~--~~~~~~~~~~~~~~ 237 (350)
T cd08274 174 GVGAGETVLVTGASGGVGSALVQLAKRRG-----AIVIAVAGAA-KEEAVR----ALG----AD--TVILRDAPLLADAK 237 (350)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHhcC-----CEEEEEeCch-hhHHHH----hcC----Ce--EEEeCCCccHHHHH
Confidence 4678899999998 33 777788888764 5788887553 444443 223 11 111111111111 1
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEE
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
......+|+++...+ ...+..+.+.|+++|.++..
T Consensus 238 ~~~~~~~d~vi~~~g----------------~~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 238 ALGGEPVDVVADVVG----------------GPLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred hhCCCCCcEEEecCC----------------HHHHHHHHHHhccCCEEEEe
Confidence 112235888876532 14677888999999998754
No 423
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=88.52 E-value=8.9 Score=32.05 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=51.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.+++||-.|+ +|.++..+++.+-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+... .
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 81 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAG--AGAHVLVNGRNAATLEAAVAALRAAG-----GAAEALAFDIADEEAVAAAFAR 81 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHHhcC-----CceEEEEccCCCHHHHHHHHHH
Confidence 4678888885 56667666665432 15799999999887776666555433 345566555443221 1
Q ss_pred -CCCCCcEEEEEEeCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~l 184 (267)
......+|.++.+.+..
T Consensus 82 ~~~~~~~id~vi~~ag~~ 99 (256)
T PRK06124 82 IDAEHGRLDILVNNVGAR 99 (256)
T ss_pred HHHhcCCCCEEEECCCCC
Confidence 11123578999988763
No 424
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=88.46 E-value=9.1 Score=32.63 Aligned_cols=97 Identities=23% Similarity=0.242 Sum_probs=60.0
Q ss_pred hcCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhh
Q 041272 91 VVRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRM 164 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l 164 (267)
.+.++.+||=.|+ | .|..+..+++..+ .+|++++.+++..+.+++ .+ .. .++.... ..+
T Consensus 133 ~~~~g~~vlI~g~~g~~g~~~~~~a~~~g-----~~v~~~~~~~~~~~~~~~----~g----~~--~~~~~~~~~~~~~~ 197 (320)
T cd05286 133 PVKPGDTVLVHAAAGGVGLLLTQWAKALG-----ATVIGTVSSEEKAELARA----AG----AD--HVINYRDEDFVERV 197 (320)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcC-----CEEEEEcCCHHHHHHHHH----CC----CC--EEEeCCchhHHHHH
Confidence 4567889999994 3 4778888888764 689999988887776643 22 11 1111111 112
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.... ....+|+++...+- ..+..+.+.|+++|.++...
T Consensus 198 ~~~~-~~~~~d~vl~~~~~----------------~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 198 REIT-GGRGVDVVYDGVGK----------------DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred HHHc-CCCCeeEEEECCCc----------------HhHHHHHHhhccCcEEEEEe
Confidence 2222 22358888765321 35667788899999987553
No 425
>PRK07904 short chain dehydrogenase; Provisional
Probab=88.34 E-value=5 Score=33.85 Aligned_cols=86 Identities=9% Similarity=0.078 Sum_probs=52.5
Q ss_pred cCCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHH-HHHHHHHHhhccccccccceEEEecChhhhhh----
Q 041272 92 VRKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEA-LKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---- 166 (267)
Q Consensus 92 l~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~-i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---- 166 (267)
+..+.+||-.|++ |.++..+++.+-. .++.+|+.++.+++. ++.+.+.++..+ ..+++++..|..+...
T Consensus 5 ~~~~~~vlItGas-~giG~~la~~l~~-~gg~~V~~~~r~~~~~~~~~~~~l~~~~----~~~v~~~~~D~~~~~~~~~~ 78 (253)
T PRK07904 5 VGNPQTILLLGGT-SEIGLAICERYLK-NAPARVVLAALPDDPRRDAAVAQMKAAG----ASSVEVIDFDALDTDSHPKV 78 (253)
T ss_pred cCCCcEEEEEcCC-cHHHHHHHHHHHh-cCCCeEEEEeCCcchhHHHHHHHHHhcC----CCceEEEEecCCChHHHHHH
Confidence 3456789998984 5677777765422 013689999998774 665555555433 2367777666543221
Q ss_pred ---cCCCCCcEEEEEEeCCCC
Q 041272 167 ---IVPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 167 ---~~~~~~~~d~ii~~~~~l 184 (267)
... ...+|.++.+.+..
T Consensus 79 ~~~~~~-~g~id~li~~ag~~ 98 (253)
T PRK07904 79 IDAAFA-GGDVDVAIVAFGLL 98 (253)
T ss_pred HHHHHh-cCCCCEEEEeeecC
Confidence 121 24689888887663
No 426
>PRK06701 short chain dehydrogenase; Provisional
Probab=88.22 E-value=8.7 Score=33.17 Aligned_cols=118 Identities=13% Similarity=-0.055 Sum_probs=61.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChH-HHHHHHHHHhhccccccccceEEEecChhhhhh---cC-
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSE-ALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~-~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~- 168 (267)
.+++||-.|++ |.++..+++++-. .+.+|+.++.++. ..+.....++..+ .++.++..|..+... ..
T Consensus 45 ~~k~iLItGas-ggIG~~la~~l~~--~G~~V~l~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~ 116 (290)
T PRK06701 45 KGKVALITGGD-SGIGRAVAVLFAK--EGADIAIVYLDEHEDANETKQRVEKEG-----VKCLLIPGDVSDEAFCKDAVE 116 (290)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH--CCCEEEEEeCCcchHHHHHHHHHHhcC-----CeEEEEEccCCCHHHHHHHHH
Confidence 36688888864 5556666654432 1578999988753 3333333333322 356666555543322 11
Q ss_pred ---CCCCcEEEEEEeCCCCCCCCCcee-----------echhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 ---PKSTAVRLVAFNLGYLPGGDKSVI-----------TTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ---~~~~~~d~ii~~~~~lp~~d~~~~-----------~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.....+|.++.+.+.......... ........+++.+.+.++++|.++++.
T Consensus 117 ~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 117 ETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred HHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 111357899988765321110000 011223455566667677777776544
No 427
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=88.16 E-value=7.9 Score=33.87 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=60.0
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec----C-hhh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM----C-HSR 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~----~-~~~ 163 (267)
..++++.+||=.|+|. |..+..+|+... +.+|++++.+++..+.+++ + + .. .++.. + ...
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~----g~~v~~~~~~~~~~~~~~~-~---g----~~--~v~~~~~~~~~~~~ 223 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVF----NAKVIAVDINDDKLALAKE-V---G----AD--LTINSKRVEDVAKI 223 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHhC----CCeEEEEeCChHHHHHHHH-c---C----Cc--EEecccccccHHHH
Confidence 3467889999999765 677777887631 3689999999988888754 2 2 11 11111 1 111
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+..... .+|.++.+.. ....++.+.+.|+++|.++...
T Consensus 224 v~~~~~---~~d~vi~~~~---------------~~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 224 IQEKTG---GAHAAVVTAV---------------AKAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred HHHhcC---CCcEEEEeCC---------------CHHHHHHHHHhccCCCEEEEEe
Confidence 222211 3564443311 0357888999999999997654
No 428
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=88.14 E-value=9.3 Score=33.77 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=59.5
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l~ 165 (267)
.+.++.+||=.|+|. |..+..+|+..|. ..++++|.+++..+.+++. + . . .++.... ..+.
T Consensus 171 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~----~~v~~~~~~~~~~~~~~~~----g----~-~-~v~~~~~~~~~~~~~ 236 (350)
T cd08256 171 NIKFDDVVVLAGAGPLGLGMIGAARLKNP----KKLIVLDLKDERLALARKF----G----A-D-VVLNPPEVDVVEKIK 236 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----cEEEEEcCCHHHHHHHHHc----C----C-c-EEecCCCcCHHHHHH
Confidence 456788887777765 6777888888753 5688999988776655441 2 1 1 1111111 1122
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
... ....+|+++...+- ...+..+.+.|+++|+++...
T Consensus 237 ~~~-~~~~vdvvld~~g~---------------~~~~~~~~~~l~~~G~~v~~g 274 (350)
T cd08256 237 ELT-GGYGCDIYIEATGH---------------PSAVEQGLNMIRKLGRFVEFS 274 (350)
T ss_pred HHh-CCCCCCEEEECCCC---------------hHHHHHHHHHhhcCCEEEEEc
Confidence 221 22247877765221 246778899999999987653
No 429
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=88.04 E-value=3.1 Score=33.35 Aligned_cols=88 Identities=19% Similarity=0.221 Sum_probs=50.7
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKST 172 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~ 172 (267)
.|.+|.=+|+|. |.....+++.+ +.+|+++|.+......+.. ..+.. .++.+.+.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-----G~~V~~~d~~~~~~~~~~~-----------~~~~~-----~~l~ell~--- 90 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-----GMRVIGYDRSPKPEEGADE-----------FGVEY-----VSLDELLA--- 90 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-----T-EEEEEESSCHHHHHHHH-----------TTEEE-----SSHHHHHH---
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-----CceeEEecccCChhhhccc-----------cccee-----eehhhhcc---
Confidence 578999999876 55555555555 4699999999886552211 11111 12222221
Q ss_pred cEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 173 AVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 173 ~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
..|+|+..++.-+....- +=++.+..+|+|.+|
T Consensus 91 ~aDiv~~~~plt~~T~~l----------i~~~~l~~mk~ga~l 123 (178)
T PF02826_consen 91 QADIVSLHLPLTPETRGL----------INAEFLAKMKPGAVL 123 (178)
T ss_dssp H-SEEEE-SSSSTTTTTS----------BSHHHHHTSTTTEEE
T ss_pred hhhhhhhhhcccccccee----------eeeeeeeccccceEE
Confidence 478888886654432211 225567788988866
No 430
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=88.03 E-value=6.7 Score=34.39 Aligned_cols=98 Identities=23% Similarity=0.301 Sum_probs=59.2
Q ss_pred cCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC---hhhhhhc
Q 041272 92 VRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC---HSRMEEI 167 (267)
Q Consensus 92 l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~ 167 (267)
+.++.+||=.|+|+ |..+..+|+..+ ..+|++++.+++..+.+++ .+ .. .++... ...+...
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g----~~~v~~~~~~~~~~~~~~~----~g----~~--~~~~~~~~~~~~i~~~ 230 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALT----PATVIAVDRSEEALKLAER----LG----AD--HVLNASDDVVEEVREL 230 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhC----CCcEEEEeCCHHHHHHHHH----hC----Cc--EEEcCCccHHHHHHHH
Confidence 56788999999765 666666777754 1689999988877665543 22 11 111111 1122222
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
. ....+|+++...+. ...++.+.+.|+++|.++...
T Consensus 231 ~-~~~~~dvvld~~g~---------------~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 231 T-GGRGADAVIDFVGS---------------DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred h-CCCCCCEEEEcCCC---------------HHHHHHHHHHhhcCCEEEEEc
Confidence 2 22357888765321 256788889999999987654
No 431
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=88.00 E-value=1.6 Score=33.86 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=26.1
Q ss_pred EecCCCC--hHHHHHH-HhcCCCCCCcEEEEEeCChHHHHHHHHH
Q 041272 100 DATCGNG--YDTLMML-KMVADESSAGCVYGLDIQSEALKSTSSL 141 (267)
Q Consensus 100 DlGcG~G--~~~~~la-~~~~~~~p~~~v~giD~s~~~i~~a~~~ 141 (267)
|+|+..| ..+..++ +..+ ++.+|+++|.++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~---~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCG---PGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS-----SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcC---CCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6655554 2333 368999999999999999998
No 432
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=87.98 E-value=7.4 Score=34.14 Aligned_cols=98 Identities=28% Similarity=0.395 Sum_probs=58.0
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l~ 165 (267)
.+.++.+||=.|+|. |..+..+|+..+. .+|++++.+++..+.+++ .+ .. .+.... ..+.
T Consensus 164 ~~~~~~~vlI~g~g~vg~~~~~~a~~~g~----~~v~~~~~~~~~~~~~~~----~g----~~---~~~~~~~~~~~~l~ 228 (344)
T cd08284 164 QVRPGDTVAVIGCGPVGLCAVLSAQVLGA----ARVFAVDPVPERLERAAA----LG----AE---PINFEDAEPVERVR 228 (344)
T ss_pred CCccCCEEEEECCcHHHHHHHHHHHHcCC----ceEEEEcCCHHHHHHHHH----hC----Ce---EEecCCcCHHHHHH
Confidence 456788888888665 6666777777531 379999888776665544 22 00 111111 1122
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
... +...+|+++...+. ...+..+.+.|+++|.++...
T Consensus 229 ~~~-~~~~~dvvid~~~~---------------~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 229 EAT-EGRGADVVLEAVGG---------------AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred HHh-CCCCCCEEEECCCC---------------HHHHHHHHHhcccCCEEEEEC
Confidence 222 22357777765211 256788889999999986543
No 433
>PRK07774 short chain dehydrogenase; Provisional
Probab=87.96 E-value=7.3 Score=32.37 Aligned_cols=84 Identities=12% Similarity=0.059 Sum_probs=50.1
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.+.+||=.| |+|.++..+++.+-. .+.+|+.++.++...+...+.+...+ .++.++..|..+....
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~--~g~~vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 76 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAR--EGASVVVADINAEGAERVAKQIVADG-----GTAIAVQVDVSDPDSAKAMADA 76 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHHHHH
Confidence 356788777 566777777765532 15799999999876655555443322 2444454444433221
Q ss_pred -CCCCCcEEEEEEeCCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~lp 185 (267)
......+|.++.+.+...
T Consensus 77 ~~~~~~~id~vi~~ag~~~ 95 (250)
T PRK07774 77 TVSAFGGIDYLVNNAAIYG 95 (250)
T ss_pred HHHHhCCCCEEEECCCCcC
Confidence 111125899999987643
No 434
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.91 E-value=7.8 Score=33.29 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=60.4
Q ss_pred cCCCCEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC-hhhhhhcC
Q 041272 92 VRKGDTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC-HSRMEEIV 168 (267)
Q Consensus 92 l~~~~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~ 168 (267)
+.++.+||=.|+ +.|..+..+|+..+ .+|+++..+++..+.+++ .+ ...+-....+ ...+...
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g-----~~v~~~~~~~~~~~~~~~----~g----~~~~~~~~~~~~~~i~~~- 205 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALG-----ATVTATTRSPERAALLKE----LG----ADEVVIDDGAIAEQLRAA- 205 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHh----cC----CcEEEecCccHHHHHHHh-
Confidence 567889998886 34788888888864 679999988877666643 22 1111100111 1122223
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
...+|+++...+ ...+.++.+.|+++|+++...
T Consensus 206 --~~~~d~vl~~~~----------------~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 206 --PGGFDKVLELVG----------------TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred --CCCceEEEECCC----------------hHHHHHHHHHhccCCEEEEEc
Confidence 235888886532 146778889999999987643
No 435
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=87.90 E-value=5.4 Score=34.71 Aligned_cols=97 Identities=24% Similarity=0.266 Sum_probs=60.4
Q ss_pred hcCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhh
Q 041272 91 VVRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRM 164 (267)
Q Consensus 91 ~l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l 164 (267)
.+.++.+||=.|. | .|..+..+|+.. +.+|++++.+++..+.+++.+.. . .++.... ..+
T Consensus 142 ~~~~~~~vlI~g~~g~ig~~~~~~a~~~-----G~~vi~~~~~~~~~~~~~~~~g~-------~--~~~~~~~~~~~~~v 207 (329)
T cd05288 142 KPKPGETVVVSAAAGAVGSVVGQIAKLL-----GARVVGIAGSDEKCRWLVEELGF-------D--AAINYKTPDLAEAL 207 (329)
T ss_pred CCCCCCEEEEecCcchHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHhhcCC-------c--eEEecCChhHHHHH
Confidence 3567889998884 3 377778888875 46899999888877776553221 1 1111111 112
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..... ..+|+++...+ ...+..+.+.|+++|.++...
T Consensus 208 ~~~~~--~~~d~vi~~~g----------------~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 208 KEAAP--DGIDVYFDNVG----------------GEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred HHhcc--CCceEEEEcch----------------HHHHHHHHHhcCCCceEEEEe
Confidence 22221 35787776531 146788899999999987554
No 436
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=87.82 E-value=7 Score=34.31 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=60.3
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh----h-
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS----R- 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~----~- 163 (267)
..++++.+||=.|+|. |..+..+|+..|. ..+++++.+++..+.+++. + . -.++..... .
T Consensus 157 ~~~~~g~~VlI~g~g~vg~~~~~la~~~G~----~~v~~~~~~~~~~~~~~~~----g----~--~~~i~~~~~~~~~~~ 222 (341)
T cd08262 157 ARLTPGEVALVIGCGPIGLAVIAALKARGV----GPIVASDFSPERRALALAM----G----A--DIVVDPAADSPFAAW 222 (341)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC----cEEEEECCCHHHHHHHHHc----C----C--cEEEcCCCcCHHHHH
Confidence 3467888998888755 6666777777653 4588899998888777652 1 0 111111111 1
Q ss_pred --hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 164 --MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 164 --l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+.... ....+|+++...+- ...+.++.+.++++|.++....
T Consensus 223 ~~~~~~~-~~~~~d~vid~~g~---------------~~~~~~~~~~l~~~g~~v~~g~ 265 (341)
T cd08262 223 AAELARA-GGPKPAVIFECVGA---------------PGLIQQIIEGAPPGGRIVVVGV 265 (341)
T ss_pred HHHHHHh-CCCCCCEEEECCCC---------------HHHHHHHHHHhccCCEEEEECC
Confidence 11111 12357877754211 1367778888999999876543
No 437
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.78 E-value=12 Score=31.33 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=60.9
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c--
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I-- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~-- 167 (267)
.++++|-.|.++ +.++..+|+.+-. .+.+|+.++.+....+..++. . ..++.++..|..+... .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~--~G~~Vi~~~r~~~~~~~~~~~----~----~~~~~~~~~Dl~~~~~v~~~~~ 75 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKD--QGATVIYTYQNDRMKKSLQKL----V----DEEDLLVECDVASDESIERAFA 75 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHH--CCCEEEEecCchHHHHHHHhh----c----cCceeEEeCCCCCHHHHHHHHH
Confidence 367888888774 5677777765532 167899888874433222221 1 1235555555443222 1
Q ss_pred --CCCCCcEEEEEEeCCCCCCC--CCcee-ech-----------hhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGG--DKSVI-TTS-----------ETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~--d~~~~-~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
......+|+++.|.+..... ...+. ... ...-.+.+.+...++.+|.++.+.
T Consensus 76 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~is 143 (252)
T PRK06079 76 TIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLT 143 (252)
T ss_pred HHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEe
Confidence 11124689999998764310 01111 111 112334455667777778765543
No 438
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.76 E-value=4.2 Score=34.84 Aligned_cols=118 Identities=12% Similarity=0.046 Sum_probs=61.3
Q ss_pred CCCEEEEecCC-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh---hc--
Q 041272 94 KGDTVVDATCG-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME---EI-- 167 (267)
Q Consensus 94 ~~~~VLDlGcG-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~---~~-- 167 (267)
.+.++|=.|.+ ++.++..+|+.+-. .+.+|+.++.++...+..++..++.+ ....+..|..+.. ..
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~--~G~~V~l~~r~~~~~~~~~~l~~~~~------~~~~~~~Dl~~~~~v~~~~~ 80 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRA--AGAELAFTYQGDALKKRVEPLAAELG------AFVAGHCDVTDEASIDAVFE 80 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHH--CCCEEEEEcCchHHHHHHHHHHHhcC------CceEEecCCCCHHHHHHHHH
Confidence 45688888986 46677777765532 15788887765433333333323222 2233444443322 11
Q ss_pred --CCCCCcEEEEEEeCCCCCCCC--Ccee-ec-----------hhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGGD--KSVI-TT-----------SETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~d--~~~~-~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
......+|+++.|.+...... ..+. .. ....-.+.+.+...++.+|.++.+.
T Consensus 81 ~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~is 148 (272)
T PRK08159 81 TLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLT 148 (272)
T ss_pred HHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 112246899999987643210 0111 11 1112344556667777778776554
No 439
>PRK06125 short chain dehydrogenase; Provisional
Probab=87.63 E-value=3.5 Score=34.71 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=51.0
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh---hcCCCC
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME---EIVPKS 171 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~---~~~~~~ 171 (267)
+++||=.|++ |.++..+++.+-. .+.+|+.++.+++..+...+.+.... ..++.++..|..+.. ......
T Consensus 7 ~k~vlItG~~-~giG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~D~~~~~~~~~~~~~~ 79 (259)
T PRK06125 7 GKRVLITGAS-KGIGAAAAEAFAA--EGCHLHLVARDADALEALAADLRAAH----GVDVAVHALDLSSPEAREQLAAEA 79 (259)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhhc----CCceEEEEecCCCHHHHHHHHHHh
Confidence 5788888864 4466665554422 15699999999887777666555432 234555554444322 222222
Q ss_pred CcEEEEEEeCCCCC
Q 041272 172 TAVRLVAFNLGYLP 185 (267)
Q Consensus 172 ~~~d~ii~~~~~lp 185 (267)
..+|.++.+.+..+
T Consensus 80 g~id~lv~~ag~~~ 93 (259)
T PRK06125 80 GDIDILVNNAGAIP 93 (259)
T ss_pred CCCCEEEECCCCCC
Confidence 36899999987643
No 440
>PLN02494 adenosylhomocysteinase
Probab=87.61 E-value=2.9 Score=38.96 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=55.2
Q ss_pred CCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC
Q 041272 93 RKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS 171 (267)
Q Consensus 93 ~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~ 171 (267)
-.|++|+=+|+|. |......++.+ +.+|+.+|.++.....|.. .+ ..+. . +.+...
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~-----Ga~VIV~e~dp~r~~eA~~----~G-------~~vv--~---leEal~-- 308 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA-----GARVIVTEIDPICALQALM----EG-------YQVL--T---LEDVVS-- 308 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEeCCchhhHHHHh----cC-------Ceec--c---HHHHHh--
Confidence 3588999999997 66666666655 3689999999865444432 11 1111 1 112111
Q ss_pred CcEEEEEEeCCCCCCCCCceeechhhHHH-HHHHHHhcccCCcEEEEEEe
Q 041272 172 TAVRLVAFNLGYLPGGDKSVITTSETTKM-ALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~~~~~~~~~-~l~~~~~~LkpgG~l~i~~~ 220 (267)
..|+++...+. .. +..+.++.+|+||+++-+..
T Consensus 309 -~ADVVI~tTGt---------------~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 309 -EADIFVTTTGN---------------KDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred -hCCEEEECCCC---------------ccchHHHHHhcCCCCCEEEEcCC
Confidence 35777665221 23 34778889999999976544
No 441
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.60 E-value=12 Score=31.07 Aligned_cols=82 Identities=15% Similarity=0.056 Sum_probs=48.0
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C---
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V--- 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~--- 168 (267)
+++||=.|+. |.++..+++.+-. .+.+|++++.++...+.....+.. + .++.++..|..+.... .
T Consensus 5 ~~~vlItGas-g~iG~~l~~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~-~-----~~~~~~~~D~~~~~~~~~~~~~~ 75 (251)
T PRK07231 5 GKVAIVTGAS-SGIGEGIARRFAA--EGARVVVTDRNEEAAERVAAEILA-G-----GRAIAVAADVSDEADVEAAVAAA 75 (251)
T ss_pred CcEEEEECCC-ChHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHhc-C-----CeEEEEECCCCCHHHHHHHHHHH
Confidence 4577777754 4555555554322 146899999998776665554432 2 3455565554443322 1
Q ss_pred -CCCCcEEEEEEeCCCCC
Q 041272 169 -PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 -~~~~~~d~ii~~~~~lp 185 (267)
.....+|.++.+.+...
T Consensus 76 ~~~~~~~d~vi~~ag~~~ 93 (251)
T PRK07231 76 LERFGSVDILVNNAGTTH 93 (251)
T ss_pred HHHhCCCCEEEECCCCCC
Confidence 11235799999887643
No 442
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=87.52 E-value=0.68 Score=38.07 Aligned_cols=47 Identities=28% Similarity=0.256 Sum_probs=29.0
Q ss_pred EEEEEEeCCCCCCCC---Ccee-------echhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 174 VRLVAFNLGYLPGGD---KSVI-------TTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 174 ~d~ii~~~~~lp~~d---~~~~-------~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
+|+|+.++||--..+ .... .........++++.|+|||||.+++.+.
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEec
Confidence 589999998854443 0000 1123347788999999999999988765
No 443
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=87.30 E-value=12 Score=32.05 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=58.4
Q ss_pred hhcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcE-EEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hh
Q 041272 90 HVVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SR 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~-v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~ 163 (267)
..++++.+||=.|+|. |..+..+|+..+ .+ |+.+..+++..+.+++ .+ . -.++.... ..
T Consensus 125 ~~~~~~~~vlI~g~g~vg~~~~~la~~~g-----~~~v~~~~~~~~~~~~~~~----~g----~--~~~~~~~~~~~~~~ 189 (312)
T cd08269 125 GWIRAGKTVAVIGAGFIGLLFLQLAAAAG-----ARRVIAIDRRPARLALARE----LG----A--TEVVTDDSEAIVER 189 (312)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-----CcEEEEECCCHHHHHHHHH----hC----C--ceEecCCCcCHHHH
Confidence 3456788888887654 666666777764 46 8999888776664432 22 1 11111111 12
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+.+.. ....+|+++...+. ...+..+.+.|+++|.++...
T Consensus 190 l~~~~-~~~~vd~vld~~g~---------------~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 190 VRELT-GGAGADVVIEAVGH---------------QWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred HHHHc-CCCCCCEEEECCCC---------------HHHHHHHHHHhccCCEEEEEc
Confidence 22222 22357888765321 246778889999999997654
No 444
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=87.26 E-value=5.6 Score=34.05 Aligned_cols=99 Identities=20% Similarity=0.230 Sum_probs=58.7
Q ss_pred hcCCCCEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccc-eEEEecCh-hhhhh
Q 041272 91 VVRKGDTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGL-VKLFNMCH-SRMEE 166 (267)
Q Consensus 91 ~l~~~~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~-v~~~~~~~-~~l~~ 166 (267)
.+.++.+||-.|| +.|..+..+++..+ .+|++++.+++..+.+++. + ... +.....+. ..+..
T Consensus 136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~g-----~~v~~~~~~~~~~~~~~~~----g----~~~~~~~~~~~~~~~i~~ 202 (323)
T cd08241 136 RLQPGETVLVLGAAGGVGLAAVQLAKALG-----ARVIAAASSEEKLALARAL----G----ADHVIDYRDPDLRERVKA 202 (323)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHhC-----CEEEEEeCCHHHHHHHHHc----C----CceeeecCCccHHHHHHH
Confidence 4667899999998 23667777777753 6799999998877776431 2 111 01010011 11222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. ....+|.++.+.+ ...+..+.+.++++|.++...
T Consensus 203 ~~-~~~~~d~v~~~~g----------------~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 203 LT-GGRGVDVVYDPVG----------------GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred Hc-CCCCcEEEEECcc----------------HHHHHHHHHhhccCCEEEEEc
Confidence 22 2235788776532 134566778889999886543
No 445
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.21 E-value=7.8 Score=33.68 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=58.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC-----
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV----- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~----- 168 (267)
.++.||==||-+|.-.....+.... +.+++-+-...+.++...+.+++.+. ..++..++.|..+..+..
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~---G~~l~lvar~~rrl~~v~~~l~~~~~---~~~v~~~~~Dvs~~~~~~~~~~~ 84 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKR---GAKLVLVARRARRLERVAEELRKLGS---LEKVLVLQLDVSDEESVKKFVEW 84 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhC---CCceEEeehhhhhHHHHHHHHHHhCC---cCccEEEeCccCCHHHHHHHHHH
Confidence 4678888899887433333333332 57888888888888888777776652 125888888877765532
Q ss_pred --CCCCcEEEEEEeCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp 185 (267)
..-+.+|+.+.|.+...
T Consensus 85 ~~~~fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 85 AIRHFGRVDVLVNNAGISL 103 (282)
T ss_pred HHHhcCCCCEEEecCcccc
Confidence 23457999999998855
No 446
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=87.16 E-value=0.67 Score=34.12 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhcccCCcEEEEE
Q 041272 196 ETTKMALEAAERILIPGGLISMV 218 (267)
Q Consensus 196 ~~~~~~l~~~~~~LkpgG~l~i~ 218 (267)
+....+++.+++.|+|||.+++.
T Consensus 21 ~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 21 EGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCEEEEe
Confidence 45688999999999999999774
No 447
>PRK08251 short chain dehydrogenase; Provisional
Probab=87.15 E-value=8.9 Score=31.86 Aligned_cols=84 Identities=10% Similarity=-0.047 Sum_probs=52.2
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------- 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------- 167 (267)
+.+||-.| |+|.++..+++++-. .+.+|+.++.+++.++...+.+.... ...++.++..|..+....
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~--~g~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAA--KGRDLALCARRTDRLEELKAELLARY---PGIKVAVAALDVNDHDQVFEVFAEF 75 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhhC---CCceEEEEEcCCCCHHHHHHHHHHH
Confidence 45788777 567777777776533 14689999999888776665554321 123566666655544321
Q ss_pred CCCCCcEEEEEEeCCCC
Q 041272 168 VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~l 184 (267)
......+|.++.+.+..
T Consensus 76 ~~~~~~id~vi~~ag~~ 92 (248)
T PRK08251 76 RDELGGLDRVIVNAGIG 92 (248)
T ss_pred HHHcCCCCEEEECCCcC
Confidence 11123589999887764
No 448
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.15 E-value=8.8 Score=33.86 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=60.7
Q ss_pred CCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEe-cChhhhhhcCCCC
Q 041272 94 KGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFN-MCHSRMEEIVPKS 171 (267)
Q Consensus 94 ~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~~~ 171 (267)
+..+|.=+|+|. |......+...+. ..+++-+|++++..+--..-+..... ......+.. ++.+++.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~---~~el~LiD~~~~~~~g~a~Dl~~~~~--~~~~~~v~~~~dy~~~~------ 70 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGL---ADELVLVDVVEDKLKGEAMDLQHGSA--FLKNPKIEADKDYSVTA------ 70 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC---CCEEEEEeCCccHHHHHHHHHHHhhc--cCCCCEEEECCCHHHhC------
Confidence 456899999976 5555444433332 45899999988644322222222110 111123332 3333322
Q ss_pred CcEEEEEEeCCCCCCCCCcee----echhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 172 TAVRLVAFNLGYLPGGDKSVI----TTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 172 ~~~d~ii~~~~~lp~~d~~~~----~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
+.|+|+...+..+.+...-. ...+...++.+.+.+. .|.|+++++..+
T Consensus 71 -~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 122 (312)
T cd05293 71 -NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNP 122 (312)
T ss_pred -CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccCh
Confidence 46788877665443221111 1223345566666666 899999887764
No 449
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.15 E-value=6.9 Score=33.93 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=54.4
Q ss_pred CEEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-------cc------cccccceEEEecC
Q 041272 96 DTVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-------TS------KAEKGLVKLFNMC 160 (267)
Q Consensus 96 ~~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-------~~------~~~~~~v~~~~~~ 160 (267)
.+|.=||+|+ | .++..++.. +.+|+.+|.+++.++.+.+++.++ +. .....++.+..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-- 76 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT-- 76 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC--
Confidence 4677788876 2 333444433 468999999999988876554332 10 00001233221
Q ss_pred hhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 161 HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 161 ~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
++.. . .+.|+|+...+ ........+++++...++|+.+++
T Consensus 77 --~~~~-~---~~aD~Vieavp----------e~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 77 --DLED-L---ADCDLVIEAAT----------EDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred --CHHH-h---cCCCEEEEcCc----------CCHHHHHHHHHHHHhhCCCCcEEE
Confidence 1211 1 14677777631 112334677888888889887664
No 450
>PRK08339 short chain dehydrogenase; Provisional
Probab=86.85 E-value=6.3 Score=33.46 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=49.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~-- 168 (267)
.+.++|-.|++.| ++..+++.+-. .+.+|+.++.+++.++.+.+.+.... ..++.++..|..+... ..
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~i~~~~~~ 79 (263)
T PRK08339 7 SGKLAFTTASSKG-IGFGVARVLAR--AGADVILLSRNEENLKKAREKIKSES----NVDVSYIVADLTKREDLERTVKE 79 (263)
T ss_pred CCCEEEEeCCCCc-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhhc----CCceEEEEecCCCHHHHHHHHHH
Confidence 3667888787654 45444444322 15799999999887777666554421 1356666555544322 11
Q ss_pred -CCCCcEEEEEEeCCC
Q 041272 169 -PKSTAVRLVAFNLGY 183 (267)
Q Consensus 169 -~~~~~~d~ii~~~~~ 183 (267)
.....+|+++.+.+.
T Consensus 80 ~~~~g~iD~lv~nag~ 95 (263)
T PRK08339 80 LKNIGEPDIFFFSTGG 95 (263)
T ss_pred HHhhCCCcEEEECCCC
Confidence 112368999988765
No 451
>PRK08643 acetoin reductase; Validated
Probab=86.75 E-value=11 Score=31.58 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=49.9
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-------c
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-------I 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-------~ 167 (267)
++++|=.|+ +|.++..+++.+-. .+.+|+.++.+++..+...+.+...+ .++.++..|..+... .
T Consensus 2 ~k~~lItGa-s~giG~~la~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~ 73 (256)
T PRK08643 2 SKVALVTGA-GQGIGFAIAKRLVE--DGFKVAIVDYNEETAQAAADKLSKDG-----GKAIAVKADVSDRDQVFAAVRQV 73 (256)
T ss_pred CCEEEEECC-CChHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEECCCCCHHHHHHHHHHH
Confidence 456777774 45566666655432 15789999999887776666655433 345555555543321 1
Q ss_pred CCCCCcEEEEEEeCCCCC
Q 041272 168 VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp 185 (267)
......+|.++.+.+..+
T Consensus 74 ~~~~~~id~vi~~ag~~~ 91 (256)
T PRK08643 74 VDTFGDLNVVVNNAGVAP 91 (256)
T ss_pred HHHcCCCCEEEECCCCCC
Confidence 111235899999887643
No 452
>PRK05867 short chain dehydrogenase; Provisional
Probab=86.72 E-value=5.8 Score=33.23 Aligned_cols=83 Identities=11% Similarity=0.072 Sum_probs=50.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~-- 168 (267)
.++++|-.|+++ .++..+++.+-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+... ..
T Consensus 8 ~~k~vlVtGas~-gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T PRK05867 8 HGKRALITGAST-GIGKRVALAYVE--AGAQVAIAARHLDALEKLADEIGTSG-----GKVVPVCCDVSQHQQVTSMLDQ 79 (253)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHHHHHhcC-----CeEEEEEccCCCHHHHHHHHHH
Confidence 367889888755 455555544322 15789999999888777766665433 345555544443221 11
Q ss_pred --CCCCcEEEEEEeCCCC
Q 041272 169 --PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~l 184 (267)
.....+|.++.+.+..
T Consensus 80 ~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 80 VTAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHHhCCCCEEEECCCCC
Confidence 1113689999987754
No 453
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.71 E-value=5.6 Score=34.51 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=29.3
Q ss_pred CEEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHh
Q 041272 96 DTVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLD 143 (267)
Q Consensus 96 ~~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~ 143 (267)
.+|.=||+|+ | .++..++.. +.+|+.+|.+++.++.+++.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHH
Confidence 3677888886 3 333444443 4689999999999988776544
No 454
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=86.70 E-value=14 Score=32.03 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=58.9
Q ss_pred hhcCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh----h
Q 041272 90 HVVRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS----R 163 (267)
Q Consensus 90 ~~l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~----~ 163 (267)
..+.++.+||=.|+ | .|..+..+|+..| .+++.+.-+++..+.+++ . + .. .++..... .
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G-----~~v~~~~~~~~~~~~~~~-~---g----~~--~~~~~~~~~~~~~ 199 (324)
T cd08292 135 LGVKPGQWLIQNAAGGAVGKLVAMLAAARG-----INVINLVRRDAGVAELRA-L---G----IG--PVVSTEQPGWQDK 199 (324)
T ss_pred hCCCCCCEEEEcccccHHHHHHHHHHHHCC-----CeEEEEecCHHHHHHHHh-c---C----CC--EEEcCCCchHHHH
Confidence 35678889998876 3 4788888888874 577777766666555543 1 2 11 11111111 1
Q ss_pred hhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 164 MEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 164 l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
+.... ....+|+++...+. ..+.++.+.|+++|+++...
T Consensus 200 i~~~~-~~~~~d~v~d~~g~----------------~~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 200 VREAA-GGAPISVALDSVGG----------------KLAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred HHHHh-CCCCCcEEEECCCC----------------hhHHHHHHhhcCCcEEEEEe
Confidence 22222 22358888765321 34577888999999987654
No 455
>PRK06197 short chain dehydrogenase; Provisional
Probab=86.51 E-value=14 Score=31.95 Aligned_cols=85 Identities=14% Similarity=0.060 Sum_probs=51.2
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.+.+||=.|+ +|.++..+++.+-. .+.+|+.++.+++..+.+.+.+.... ...++.++..|..+....
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~--~G~~vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dl~d~~~v~~~~~~ 88 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAA--KGAHVVLAVRNLDKGKAAAARITAAT---PGADVTLQELDLTSLASVRAAADA 88 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhC---CCCceEEEECCCCCHHHHHHHHHH
Confidence 4567887775 55666666664432 15689999998887766655554321 023566666665544321
Q ss_pred -CCCCCcEEEEEEeCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~l 184 (267)
......+|+++.+.+..
T Consensus 89 ~~~~~~~iD~li~nAg~~ 106 (306)
T PRK06197 89 LRAAYPRIDLLINNAGVM 106 (306)
T ss_pred HHhhCCCCCEEEECCccc
Confidence 11123689999998753
No 456
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=86.49 E-value=5.5 Score=33.18 Aligned_cols=85 Identities=13% Similarity=0.014 Sum_probs=50.2
Q ss_pred CCCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh-----hhhh-
Q 041272 93 RKGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS-----RMEE- 166 (267)
Q Consensus 93 ~~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~-----~l~~- 166 (267)
.++.+||=.|+ +|.++..+++.+-. .+.+|+++|.+++.++...+.++..+ ..++.++..+.. ++..
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~--~G~~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~d~~~~~~~~~~~~ 82 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYAR--HGATVILLGRTEEKLEAVYDEIEAAG----GPQPAIIPLDLLTATPQNYQQL 82 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHhcC----CCCceEEEecccCCCHHHHHHH
Confidence 36778999894 66777766665432 14699999999887766655555433 234444433321 1111
Q ss_pred ---cCCCCCcEEEEEEeCCCC
Q 041272 167 ---IVPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 167 ---~~~~~~~~d~ii~~~~~l 184 (267)
.......+|.++.+.+..
T Consensus 83 ~~~~~~~~~~id~vi~~Ag~~ 103 (247)
T PRK08945 83 ADTIEEQFGRLDGVLHNAGLL 103 (247)
T ss_pred HHHHHHHhCCCCEEEECCccc
Confidence 111113589999887653
No 457
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=86.37 E-value=11 Score=31.91 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=54.6
Q ss_pred cCCCCEEEEecC-C-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCC
Q 041272 92 VRKGDTVVDATC-G-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVP 169 (267)
Q Consensus 92 l~~~~~VLDlGc-G-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 169 (267)
+.++.+||=.|+ | .|..+..+++.. +.+|+.++.++ ..+.+++ .+ .. .++.....+... ..
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~-----g~~v~~~~~~~-~~~~~~~----~g----~~--~~~~~~~~~~~~-~~ 204 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKAR-----GARVIATASAA-NADFLRS----LG----AD--EVIDYTKGDFER-AA 204 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHc-----CCEEEEEecch-hHHHHHH----cC----CC--EEEeCCCCchhh-cc
Confidence 667889998886 3 366777777775 46788887666 5554432 22 01 111111111111 11
Q ss_pred CCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 170 KSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 170 ~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
....+|+++...+. .....+.+.|+++|.++...
T Consensus 205 ~~~~~d~v~~~~~~----------------~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 205 APGGVDAVLDTVGG----------------ETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred CCCCceEEEECCch----------------HHHHHHHHHHhcCcEEEEEc
Confidence 22357777765321 36677788899999987543
No 458
>PRK07035 short chain dehydrogenase; Provisional
Probab=86.22 E-value=9.2 Score=31.90 Aligned_cols=83 Identities=13% Similarity=0.156 Sum_probs=48.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------- 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------- 167 (267)
+.+||=.|+++| ++..+++.+-. .+.+|+.++.+++.++...+.+...+ .++.++..|..+....
T Consensus 8 ~k~vlItGas~g-IG~~l~~~l~~--~G~~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~ 79 (252)
T PRK07035 8 GKIALVTGASRG-IGEAIAKLLAQ--QGAHVIVSSRKLDGCQAVADAIVAAG-----GKAEALACHIGEMEQIDALFAHI 79 (252)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEEcCCCCHHHHHHHHHHH
Confidence 467888887654 55555544322 15699999999887776666655433 3445555444333221
Q ss_pred CCCCCcEEEEEEeCCCCC
Q 041272 168 VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp 185 (267)
...-..+|+++.+.+..+
T Consensus 80 ~~~~~~id~li~~ag~~~ 97 (252)
T PRK07035 80 RERHGRLDILVNNAAANP 97 (252)
T ss_pred HHHcCCCCEEEECCCcCC
Confidence 111125899998887643
No 459
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=86.15 E-value=6.3 Score=34.70 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=60.5
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-h----hh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-S----RM 164 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~----~l 164 (267)
.+.++.+||=.|+|. |..+..+|+.. +.+|++++.+++..+.+++ + + .. .++.... . .+
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~-----G~~vi~~~~~~~~~~~~~~-~---g----~~--~~i~~~~~~~~~~~~ 226 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIASAL-----GARVIAVDIDDDKLELARE-L---G----AV--ATVNASEVEDVAAAV 226 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCeEEEEeCCHHHHHHHHH-h---C----CC--EEEccccchhHHHHH
Confidence 356788999999765 66777778776 4689999999887777743 2 2 11 1111111 1 12
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..... + .+|+++...+. ...+..+.+.|+++|.++...
T Consensus 227 ~~~~~-~-~~d~vi~~~g~---------------~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 227 RDLTG-G-GAHVSVDALGI---------------PETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred HHHhC-C-CCCEEEEcCCC---------------HHHHHHHHHHhhcCCEEEEeC
Confidence 22222 2 57887765321 256778889999999987543
No 460
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=86.07 E-value=9.9 Score=33.33 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=60.0
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcE-EEEEeCChHHHHHHHHHHhhccccccccceEEEecCh----hhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGC-VYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH----SRM 164 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~-v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~----~~l 164 (267)
.++++.+||=.|+|. |..+..+|+..+ .+ |++++.+++..+.+++ + + . -.++.... ..+
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~g-----~~~v~~~~~s~~~~~~~~~-~---g----~--~~~~~~~~~~~~~~i 226 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKASG-----ARKVIVSDLNEFRLEFAKK-L---G----A--DYTIDAAEEDLVEKV 226 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-----CcEEEEECCCHHHHHHHHH-h---C----C--cEEecCCccCHHHHH
Confidence 467888988888763 777777887764 45 8899988887776643 1 2 1 11121111 112
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.... .+..+|+++...+. ...+..+.+.|+++|.++...
T Consensus 227 ~~~~-~~~~vd~vld~~~~---------------~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 227 RELT-DGRGADVVIVATGS---------------PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred HHHh-CCcCCCEEEECCCC---------------hHHHHHHHHHhhcCCEEEEEe
Confidence 2222 22347887765321 246778889999999987643
No 461
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=86.03 E-value=8.5 Score=32.42 Aligned_cols=80 Identities=14% Similarity=0.037 Sum_probs=46.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c---
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I--- 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~--- 167 (267)
.+.++|=.|++. .++..+++.+-. .+.+|+.++.+++.++...+.. + .++.++..|..+... .
T Consensus 5 ~~k~vlVtGas~-gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~---~-----~~~~~~~~D~~~~~~~~~~~~~ 73 (263)
T PRK06200 5 HGQVALITGGGS-GIGRALVERFLA--EGARVAVLERSAEKLASLRQRF---G-----DHVLVVEGDVTSYADNQRAVDQ 73 (263)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHh---C-----CcceEEEccCCCHHHHHHHHHH
Confidence 356888888654 456655554432 1578999999987766554432 1 234455544433221 1
Q ss_pred -CCCCCcEEEEEEeCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~l 184 (267)
......+|.++.+.+..
T Consensus 74 ~~~~~g~id~li~~ag~~ 91 (263)
T PRK06200 74 TVDAFGKLDCFVGNAGIW 91 (263)
T ss_pred HHHhcCCCCEEEECCCCc
Confidence 11123689999998753
No 462
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=85.79 E-value=10 Score=32.83 Aligned_cols=96 Identities=13% Similarity=0.019 Sum_probs=57.7
Q ss_pred CCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEec-ChhhhhhcCCC
Q 041272 94 KGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNM-CHSRMEEIVPK 170 (267)
Q Consensus 94 ~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~~ 170 (267)
.+.+||=.|+ |. |..+..+|+..| .+|+.++.+++..+.+++ .+ ...+--... ....+... .
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g-----~~v~~~~~~~~~~~~~~~----~g----~~~v~~~~~~~~~~~~~~-~- 210 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLG-----YEVVASTGKADAADYLKK----LG----AKEVIPREELQEESIKPL-E- 210 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC-----CeEEEEecCHHHHHHHHH----cC----CCEEEcchhHHHHHHHhh-c-
Confidence 4678988887 44 777778888764 689999999887776644 22 111100010 01112222 1
Q ss_pred CCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 171 STAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 171 ~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
...+|+++...+ ...+..+.+.|+++|+++....
T Consensus 211 ~~~~d~vld~~g----------------~~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 211 KQRWAGAVDPVG----------------GKTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred cCCcCEEEECCc----------------HHHHHHHHHHhhcCCEEEEEee
Confidence 234777765421 1467788899999999977653
No 463
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=85.71 E-value=15 Score=30.80 Aligned_cols=83 Identities=16% Similarity=0.098 Sum_probs=49.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.+++||-.|++ |.++..+++.+-. .+.+|+.++.++..++.....++..+ .++.++..|..+....
T Consensus 10 ~~k~vlVtG~s-~gIG~~la~~l~~--~G~~vv~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~i~~~~~~ 81 (255)
T PRK06113 10 DGKCAIITGAG-AGIGKEIAITFAT--AGASVVVSDINADAANHVVDEIQQLG-----GQAFACRCDITSEQELSALADF 81 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 36789999955 4555555554322 15789999998887776655554422 3455555554433221
Q ss_pred -CCCCCcEEEEEEeCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~l 184 (267)
......+|.++.+.+..
T Consensus 82 ~~~~~~~~d~li~~ag~~ 99 (255)
T PRK06113 82 ALSKLGKVDILVNNAGGG 99 (255)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 11123579999987653
No 464
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=85.58 E-value=9.3 Score=34.28 Aligned_cols=108 Identities=22% Similarity=0.247 Sum_probs=62.7
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC----hhhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC----HSRME 165 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~----~~~l~ 165 (267)
.+.++.+||-.|+|. |..+..+|+..|. .+|+++|.+++..+.+++. + . ..+... ...+.
T Consensus 173 ~~~~g~~vlI~g~g~vg~~~~~~a~~~G~----~~vi~~~~~~~~~~~~~~~----g-----~--~~v~~~~~~~~~~i~ 237 (375)
T cd08282 173 GVQPGDTVAVFGAGPVGLMAAYSAILRGA----SRVYVVDHVPERLDLAESI----G-----A--IPIDFSDGDPVEQIL 237 (375)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHHHHHHc----C-----C--eEeccCcccHHHHHH
Confidence 466788888888875 7777788877642 4799999998777766541 1 0 111111 11122
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.... ..+|+++...+.-... ..........+.++.+.|+++|.+....
T Consensus 238 ~~~~--~~~d~v~d~~g~~~~~----~~~~~~~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 238 GLEP--GGVDRAVDCVGYEARD----RGGEAQPNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred HhhC--CCCCEEEECCCCcccc----cccccchHHHHHHHHHHhhcCcEEEEEe
Confidence 2222 2477777664321000 0000122346888899999999996543
No 465
>PRK07109 short chain dehydrogenase; Provisional
Probab=85.54 E-value=12 Score=33.04 Aligned_cols=82 Identities=12% Similarity=-0.037 Sum_probs=50.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------- 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------- 167 (267)
+.+||=.|+ +|.++..+++.+-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+....
T Consensus 8 ~k~vlITGa-s~gIG~~la~~la~--~G~~Vvl~~R~~~~l~~~~~~l~~~g-----~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 8 RQVVVITGA-SAGVGRATARAFAR--RGAKVVLLARGEEGLEALAAEIRAAG-----GEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHcC-----CcEEEEEecCCCHHHHHHHHHHH
Confidence 557887775 45566666554422 15789999999988877776665543 4566665555443221
Q ss_pred CCCCCcEEEEEEeCCCC
Q 041272 168 VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~l 184 (267)
...-..+|+++.+.+..
T Consensus 80 ~~~~g~iD~lInnAg~~ 96 (334)
T PRK07109 80 EEELGPIDTWVNNAMVT 96 (334)
T ss_pred HHHCCCCCEEEECCCcC
Confidence 11123689999887653
No 466
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=85.53 E-value=14 Score=28.29 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=57.8
Q ss_pred EEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCCCcE
Q 041272 97 TVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKSTAV 174 (267)
Q Consensus 97 ~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 174 (267)
+|.=+|+ |. |.....+....+- ..+++-+|+.+...+--..-+..... ....+..+..++.+++. +.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l---~~ei~L~D~~~~~~~g~a~Dl~~~~~-~~~~~~~i~~~~~~~~~-------~a 70 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGL---ADEIVLIDINEDKAEGEALDLSHASA-PLPSPVRITSGDYEALK-------DA 70 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTT---SSEEEEEESSHHHHHHHHHHHHHHHH-GSTEEEEEEESSGGGGT-------TE
T ss_pred EEEEECCCChHHHHHHHHHHhCCC---CCceEEeccCcccceeeehhhhhhhh-hcccccccccccccccc-------cc
Confidence 6777888 65 6555555544333 46899999998743322222222110 01123333333333332 57
Q ss_pred EEEEEeCCCCCCCCCceee----chhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVIT----TSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|+++...+....+..+-.. ..+...++.+.+.+. .|.|.++++..
T Consensus 71 Divvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~vivvtN 119 (141)
T PF00056_consen 71 DIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIVVTN 119 (141)
T ss_dssp SEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE-SS
T ss_pred cEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEEeCC
Confidence 8888887764333222111 122234455555555 59999888765
No 467
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.35 E-value=3.5 Score=37.45 Aligned_cols=73 Identities=16% Similarity=0.115 Sum_probs=44.8
Q ss_pred CEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhh---hhcCCCC
Q 041272 96 DTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRM---EEIVPKS 171 (267)
Q Consensus 96 ~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l---~~~~~~~ 171 (267)
++||=||||. |........+.+ ..+|+..|.+.+..+.+..... .+++.++-|..+. .+.+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~----d~~V~iAdRs~~~~~~i~~~~~--------~~v~~~~vD~~d~~al~~li~-- 67 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNG----DGEVTIADRSKEKCARIAELIG--------GKVEALQVDAADVDALVALIK-- 67 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCC----CceEEEEeCCHHHHHHHHhhcc--------ccceeEEecccChHHHHHHHh--
Confidence 5799999965 444433322222 3699999999888777765432 2555555555444 33342
Q ss_pred CcEEEEEEeCCC
Q 041272 172 TAVRLVAFNLGY 183 (267)
Q Consensus 172 ~~~d~ii~~~~~ 183 (267)
++|+++...++
T Consensus 68 -~~d~VIn~~p~ 78 (389)
T COG1748 68 -DFDLVINAAPP 78 (389)
T ss_pred -cCCEEEEeCCc
Confidence 35888887544
No 468
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=85.30 E-value=6.4 Score=34.41 Aligned_cols=96 Identities=22% Similarity=0.217 Sum_probs=60.3
Q ss_pred hcCCCCEEEEecCC--CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 91 VVRKGDTVVDATCG--NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG--~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
.+.++.+||=.|++ .|..+..+|+..+ .+++.++.+++..+.+++. ...- .. .. ....++...
T Consensus 159 ~~~~~~~vlI~g~~g~~g~~~~~la~~~g-----~~vi~~~~~~~~~~~~~~~-~~~~----~~-~~---~~~~~v~~~- 223 (334)
T PRK13771 159 GVKKGETVLVTGAGGGVGIHAIQVAKALG-----AKVIAVTSSESKAKIVSKY-ADYV----IV-GS---KFSEEVKKI- 223 (334)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHHH-HHHh----cC-ch---hHHHHHHhc-
Confidence 45678899999983 3788888888864 6899999998888777553 1100 00 00 001122221
Q ss_pred CCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 169 PKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
..+|+++...+. ..+..+.+.|+++|.++....
T Consensus 224 ---~~~d~~ld~~g~----------------~~~~~~~~~l~~~G~~v~~g~ 256 (334)
T PRK13771 224 ---GGADIVIETVGT----------------PTLEESLRSLNMGGKIIQIGN 256 (334)
T ss_pred ---CCCcEEEEcCCh----------------HHHHHHHHHHhcCCEEEEEec
Confidence 136777765221 356788888999999876543
No 469
>PRK06172 short chain dehydrogenase; Provisional
Probab=85.26 E-value=5.2 Score=33.46 Aligned_cols=82 Identities=13% Similarity=0.031 Sum_probs=51.1
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-------
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------- 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------- 167 (267)
+.+||-.|++ |.++..+++++-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+....
T Consensus 7 ~k~ilItGas-~~iG~~ia~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~i~~~~~~~ 78 (253)
T PRK06172 7 GKVALVTGGA-AGIGRATALAFAR--EGAKVVVADRDAAGGEETVALIREAG-----GEALFVACDVTRDAEVKALVEQT 78 (253)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcC-----CceEEEEcCCCCHHHHHHHHHHH
Confidence 5688888864 5566666554432 15789999999887776666665433 4566666555433221
Q ss_pred CCCCCcEEEEEEeCCCC
Q 041272 168 VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~l 184 (267)
......+|.++.+.+..
T Consensus 79 ~~~~g~id~li~~ag~~ 95 (253)
T PRK06172 79 IAAYGRLDYAFNNAGIE 95 (253)
T ss_pred HHHhCCCCEEEECCCCC
Confidence 11113579999988764
No 470
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=85.24 E-value=14 Score=31.76 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=61.5
Q ss_pred hcCCCCEEEEe--cCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc-
Q 041272 91 VVRKGDTVVDA--TCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI- 167 (267)
Q Consensus 91 ~l~~~~~VLDl--GcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~- 167 (267)
.+++|++||-- .-|.|.+...+++.. +.++++.--+.+-.+.|+++-.. ..|....+|+.+.
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~-----~a~tI~~asTaeK~~~akenG~~----------h~I~y~~eD~v~~V 207 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAV-----GAHTIATASTAEKHEIAKENGAE----------HPIDYSTEDYVDEV 207 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhc-----CcEEEEEeccHHHHHHHHhcCCc----------ceeeccchhHHHHH
Confidence 46789877653 334578888888876 46899998888887777775332 1222233444331
Q ss_pred --CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 168 --VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 168 --~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
.....-+|+++-..+- ..++.-+..|||+|.++-
T Consensus 208 ~kiTngKGVd~vyDsvG~----------------dt~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 208 KKITNGKGVDAVYDSVGK----------------DTFAKSLAALKPMGKMVS 243 (336)
T ss_pred HhccCCCCceeeeccccc----------------hhhHHHHHHhccCceEEE
Confidence 2222357777665432 567777889999999964
No 471
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=85.22 E-value=5.2 Score=39.52 Aligned_cols=98 Identities=11% Similarity=0.029 Sum_probs=63.3
Q ss_pred CEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc-------------cccccceEEEecC
Q 041272 96 DTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS-------------KAEKGLVKLFNMC 160 (267)
Q Consensus 96 ~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~-------------~~~~~~v~~~~~~ 160 (267)
.+|-=||+|+ +.++..+|.. +..|+-+|.+++.++.+++++...-. .....+++...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-- 385 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-- 385 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC--
Confidence 3788899997 3455555554 57999999999999988877654210 00012232221
Q ss_pred hhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 161 HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 161 ~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
++... .+.|+|+-. +....+.+.++++++-++++|+.+|.-
T Consensus 386 --~~~~~----~~aDlViEa----------v~E~l~~K~~vf~~l~~~~~~~~ilas 426 (714)
T TIGR02437 386 --SYAGF----DNVDIVVEA----------VVENPKVKAAVLAEVEQHVREDAILAS 426 (714)
T ss_pred --CHHHh----cCCCEEEEc----------CcccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 11111 246777776 334466778999999999999988743
No 472
>PRK07478 short chain dehydrogenase; Provisional
Probab=85.03 E-value=11 Score=31.51 Aligned_cols=82 Identities=12% Similarity=-0.014 Sum_probs=49.9
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh-------c
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-------I 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-------~ 167 (267)
+.++|=.|++ |.++..+++.+-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+... .
T Consensus 6 ~k~~lItGas-~giG~~ia~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~ 77 (254)
T PRK07478 6 GKVAIITGAS-SGIGRAAAKLFAR--EGAKVVVGARRQAELDQLVAEIRAEG-----GEAVALAGDVRDEAYAKALVALA 77 (254)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHHHHHH
Confidence 5678876665 4555555554432 15789999999888777766665533 345555555443321 1
Q ss_pred CCCCCcEEEEEEeCCCC
Q 041272 168 VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~l 184 (267)
......+|.++.+.+..
T Consensus 78 ~~~~~~id~li~~ag~~ 94 (254)
T PRK07478 78 VERFGGLDIAFNNAGTL 94 (254)
T ss_pred HHhcCCCCEEEECCCCC
Confidence 11123689999998764
No 473
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=85.03 E-value=4.4 Score=34.05 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=52.8
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.+.+||=.| |+|.++..+++++-. .+.+|+.++.+.+.++...+.+...+ .++.++..|..+....
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~i~~~~-----~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGE--AGARVVLSARKAEELEEAAAHLEALG-----IDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEEccCCCHHHHHHHHHH
Confidence 467888888 567778777776533 15689999999887776666555432 3556666555543322
Q ss_pred -CCCCCcEEEEEEeCCC
Q 041272 168 -VPKSTAVRLVAFNLGY 183 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~ 183 (267)
......+|.++.+.+.
T Consensus 83 ~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 83 TLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 1111357899888765
No 474
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.97 E-value=9.9 Score=32.77 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=53.3
Q ss_pred EEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-------cc-c-----ccccceEEEecCh
Q 041272 97 TVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-------TS-K-----AEKGLVKLFNMCH 161 (267)
Q Consensus 97 ~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-------~~-~-----~~~~~v~~~~~~~ 161 (267)
+|-=||+|. +.++..++.. +.+|+++|++++.++.+++++++. +. . ....++.+..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~--- 75 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTT--- 75 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC---
Confidence 566778775 3444444443 358999999999998766544321 10 0 0001222221
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEE
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLI 215 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l 215 (267)
+.... ...|+|+...+ .......++++++.+.++|+.++
T Consensus 76 -~~~~~----~~aDlVi~av~----------e~~~~k~~~~~~l~~~~~~~~il 114 (282)
T PRK05808 76 -DLDDL----KDADLVIEAAT----------ENMDLKKKIFAQLDEIAKPEAIL 114 (282)
T ss_pred -CHHHh----ccCCeeeeccc----------ccHHHHHHHHHHHHhhCCCCcEE
Confidence 11111 24677776621 12234468889999988988777
No 475
>PRK07063 short chain dehydrogenase; Provisional
Probab=84.79 E-value=17 Score=30.44 Aligned_cols=85 Identities=9% Similarity=0.038 Sum_probs=51.6
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~-- 168 (267)
.+++||-.|++ |.++..+++.+-. .+.+|+.++.+++.++...+.+...+ ...++.++..|..+... ..
T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~--~G~~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (260)
T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAR--EGAAVALADLDAALAERAAAAIARDV---AGARVLAVPADVTDAASVAAAVAA 79 (260)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcc---CCceEEEEEccCCCHHHHHHHHHH
Confidence 35688888875 4555555554422 15789999999888777776665421 12356666555443322 11
Q ss_pred --CCCCcEEEEEEeCCCC
Q 041272 169 --PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~l 184 (267)
.....+|.++.+.+..
T Consensus 80 ~~~~~g~id~li~~ag~~ 97 (260)
T PRK07063 80 AEEAFGPLDVLVNNAGIN 97 (260)
T ss_pred HHHHhCCCcEEEECCCcC
Confidence 1123689999988754
No 476
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.79 E-value=9 Score=31.63 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=50.7
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEE-eCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGL-DIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~gi-D~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
++++|=.| |+|.++..+++.+-. .+.+|+.+ +.+++..+...+.+...+ .++.++..|..+.... .
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~--~g~~v~~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 76 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAK--EGAKVVIAYDINEEAAQELLEEIKEEG-----GDAIAVKADVSSEEDVENLVEQ 76 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHH--CCCEEEEEcCCCHHHHHHHHHHHHhcC-----CeEEEEECCCCCHHHHHHHHHH
Confidence 45777777 467777777765432 14688888 988877666555554422 4566666665543321 1
Q ss_pred --CCCCcEEEEEEeCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp 185 (267)
.....+|.++.+.+..+
T Consensus 77 ~~~~~~~id~vi~~ag~~~ 95 (247)
T PRK05565 77 IVEKFGKIDILVNNAGISN 95 (247)
T ss_pred HHHHhCCCCEEEECCCcCC
Confidence 11125899999887653
No 477
>PRK08324 short chain dehydrogenase; Validated
Probab=84.78 E-value=9.8 Score=37.38 Aligned_cols=117 Identities=18% Similarity=0.149 Sum_probs=63.7
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~-- 168 (267)
.+++||=.|++ |.++..+++.+.. .+.+|+.+|.+++.++.+.+.+... .++.++..|..+... ..
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~--~Ga~Vvl~~r~~~~~~~~~~~l~~~------~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAA--EGACVVLADLDEEAAEAAAAELGGP------DRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHH--CcCEEEEEeCCHHHHHHHHHHHhcc------CcEEEEEecCCCHHHHHHHHHH
Confidence 46788887764 4555555554432 1568999999998776665544321 245555544433221 11
Q ss_pred --CCCCcEEEEEEeCCCCCCCCCcee----------echhhHHHHHHHHHhcccC---CcEEEEEE
Q 041272 169 --PKSTAVRLVAFNLGYLPGGDKSVI----------TTSETTKMALEAAERILIP---GGLISMVV 219 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp~~d~~~~----------~~~~~~~~~l~~~~~~Lkp---gG~l~i~~ 219 (267)
.....+|+++.+.+........-. ........+++.+.+.+++ ||.++++.
T Consensus 492 ~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 492 AALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 112358999999876433211000 0111134456666776665 67776543
No 478
>PRK06914 short chain dehydrogenase; Provisional
Probab=84.72 E-value=23 Score=30.04 Aligned_cols=84 Identities=13% Similarity=0.056 Sum_probs=48.8
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------C
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------V 168 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------~ 168 (267)
+.++|-.|+ +|.++..+++.+-. .+.+|++++.+++..+...+.....+ ...++.++..|..+.... .
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~ 76 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAK--KGYLVIATMRNPEKQENLLSQATQLN---LQQNIKVQQLDVTDQNSIHNFQLVL 76 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcC---CCCceeEEecCCCCHHHHHHHHHHH
Confidence 456787775 44556665554322 15789999998877666554443322 124567766665543321 1
Q ss_pred CCCCcEEEEEEeCCCC
Q 041272 169 PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~l 184 (267)
..-..+|.++.+.+..
T Consensus 77 ~~~~~id~vv~~ag~~ 92 (280)
T PRK06914 77 KEIGRIDLLVNNAGYA 92 (280)
T ss_pred HhcCCeeEEEECCccc
Confidence 1123689999887653
No 479
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=84.65 E-value=16 Score=32.83 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=48.3
Q ss_pred hcCCCCEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcC
Q 041272 91 VVRKGDTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIV 168 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 168 (267)
..++|.+||=+|.++ |..++.+|+..+ ...+....|.+.++.+++. ..-..++.+..+..+..
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~-----~~~v~t~~s~e~~~l~k~l----------GAd~vvdy~~~~~~e~~ 218 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG-----AIKVVTACSKEKLELVKKL----------GADEVVDYKDENVVELI 218 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC-----CcEEEEEcccchHHHHHHc----------CCcEeecCCCHHHHHHH
Confidence 467888888888776 677788998863 3566667788888877763 22223333334443333
Q ss_pred CC--CCcEEEEEEeCC
Q 041272 169 PK--STAVRLVAFNLG 182 (267)
Q Consensus 169 ~~--~~~~d~ii~~~~ 182 (267)
.. ...||+|+-+.+
T Consensus 219 kk~~~~~~DvVlD~vg 234 (347)
T KOG1198|consen 219 KKYTGKGVDVVLDCVG 234 (347)
T ss_pred HhhcCCCccEEEECCC
Confidence 22 346888887743
No 480
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=84.64 E-value=4.3 Score=40.24 Aligned_cols=98 Identities=10% Similarity=-0.004 Sum_probs=62.9
Q ss_pred CEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccc-------------cccccceEEEecC
Q 041272 96 DTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTS-------------KAEKGLVKLFNMC 160 (267)
Q Consensus 96 ~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~-------------~~~~~~v~~~~~~ 160 (267)
.+|-=||+|+ +.++..+|.. +..|+.+|.+++.++.+.+++.+.-. .....++++..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-- 407 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL-- 407 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC--
Confidence 4788999987 3444555544 57999999999999998887754210 00012233221
Q ss_pred hhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEE
Q 041272 161 HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISM 217 (267)
Q Consensus 161 ~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 217 (267)
++... .+.|+|+-. +....+.+.++++++-++++|+.+|.-
T Consensus 408 --~~~~~----~~aDlViEA----------v~E~l~~K~~vf~~l~~~~~~~~ilas 448 (737)
T TIGR02441 408 --DYSGF----KNADMVIEA----------VFEDLSLKHKVIKEVEAVVPPHCIIAS 448 (737)
T ss_pred --CHHHh----ccCCeehhh----------ccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 11111 246677665 334466778999999999999988853
No 481
>PRK07062 short chain dehydrogenase; Provisional
Probab=84.51 E-value=7.8 Score=32.64 Aligned_cols=85 Identities=13% Similarity=0.047 Sum_probs=50.5
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc------
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI------ 167 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------ 167 (267)
.+.++|=.|++. .++..+++.+-. .+.+|+.++.+++.++.+.+.+.... ...++..+..|..+....
T Consensus 7 ~~k~~lItGas~-giG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~ 80 (265)
T PRK07062 7 EGRVAVVTGGSS-GIGLATVELLLE--AGASVAICGRDEERLASAEARLREKF---PGARLLAARCDVLDEADVAAFAAA 80 (265)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHhhC---CCceEEEEEecCCCHHHHHHHHHH
Confidence 356888888655 455555554422 15789999999987777666654432 012455555444443221
Q ss_pred -CCCCCcEEEEEEeCCCC
Q 041272 168 -VPKSTAVRLVAFNLGYL 184 (267)
Q Consensus 168 -~~~~~~~d~ii~~~~~l 184 (267)
......+|.++.+.+..
T Consensus 81 ~~~~~g~id~li~~Ag~~ 98 (265)
T PRK07062 81 VEARFGGVDMLVNNAGQG 98 (265)
T ss_pred HHHhcCCCCEEEECCCCC
Confidence 11123689999998763
No 482
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=84.43 E-value=13 Score=28.70 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=49.4
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCC--hHHHHHHHHHHhhccccccccceEEEecChhhhhh-------c
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQ--SEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE-------I 167 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s--~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~-------~ 167 (267)
+||=.|++ |.++..+++.+-. .++.+|+.+..+ .+..+...+.++..+ .++.++..|..+... .
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~-~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALAR-RGARVVILTSRSEDSEGAQELIQELKAPG-----AKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHH-TTTEEEEEEESSCHHHHHHHHHHHHHHTT-----SEEEEEESETTSHHHHHHHHHHH
T ss_pred EEEEECCC-CHHHHHHHHHHHh-cCceEEEEeeecccccccccccccccccc-----ccccccccccccccccccccccc
Confidence 46666766 4555555554422 023588899988 555665555555433 677777655443322 1
Q ss_pred CCCCCcEEEEEEeCCCCC
Q 041272 168 VPKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp 185 (267)
......+|.++.+.+...
T Consensus 75 ~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 75 IKRFGPLDILINNAGIFS 92 (167)
T ss_dssp HHHHSSESEEEEECSCTT
T ss_pred cccccccccccccccccc
Confidence 222347999999988866
No 483
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=84.43 E-value=23 Score=29.83 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=51.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+.++|-.|++.| ++..+++++-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+.... .
T Consensus 9 ~~k~~lItGa~~~-iG~~ia~~l~~--~G~~vv~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 9 KGKIALITGASYG-IGFAIAKAYAK--AGATIVFNDINQELVDKGLAAYRELG-----IEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHhcC-----CceEEEEcCCCCHHHHHHHHHH
Confidence 4568888887764 44444443321 15789999999888777766665433 3566666555443221 1
Q ss_pred --CCCCcEEEEEEeCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp 185 (267)
..-..+|.++.+.+...
T Consensus 81 ~~~~~~~id~li~~ag~~~ 99 (265)
T PRK07097 81 IEKEVGVIDILVNNAGIIK 99 (265)
T ss_pred HHHhCCCCCEEEECCCCCC
Confidence 11135899999987643
No 484
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=84.37 E-value=8.1 Score=33.55 Aligned_cols=97 Identities=16% Similarity=0.227 Sum_probs=53.5
Q ss_pred CEEEEecCCC-C-hHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhc-------cc------cccccceEEEecC
Q 041272 96 DTVVDATCGN-G-YDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKT-------TS------KAEKGLVKLFNMC 160 (267)
Q Consensus 96 ~~VLDlGcG~-G-~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~-------~~------~~~~~~v~~~~~~ 160 (267)
.+|-=||+|. | .++..++.. +.+|+.+|.+++.++.+++++.+. +. .....++.+..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-- 76 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT-- 76 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC--
Confidence 4677778774 2 333333333 468999999999988777654321 10 00001122211
Q ss_pred hhhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEE
Q 041272 161 HSRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLIS 216 (267)
Q Consensus 161 ~~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 216 (267)
+... . ...|+|+... ...+.....+++++...++|+.+++
T Consensus 77 --~~~~-~---~~aD~Vieav----------~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 77 --NLEE-L---RDADFIIEAI----------VESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred --CHHH-h---CCCCEEEEcC----------ccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 1111 1 1357777762 2234555678888888888887653
No 485
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=84.33 E-value=7.7 Score=33.72 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=55.0
Q ss_pred hhcCCCCEEEEecC-CC-ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC--hhhhh
Q 041272 90 HVVRKGDTVVDATC-GN-GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC--HSRME 165 (267)
Q Consensus 90 ~~l~~~~~VLDlGc-G~-G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 165 (267)
..++++.+||=+|+ |. |..+..+|+..| .+|++++.+ +.++ +.+ .. .++... ...+.
T Consensus 158 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G-----~~v~~~~~~----~~~~----~~g----~~--~~~~~~~~~~~l~ 218 (325)
T cd08264 158 AGLGPGETVVVFGASGNTGIFAVQLAKMMG-----AEVIAVSRK----DWLK----EFG----AD--EVVDYDEVEEKVK 218 (325)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHcC-----CeEEEEeHH----HHHH----HhC----CC--eeecchHHHHHHH
Confidence 34678899999997 44 788888888764 578888622 2222 222 01 111111 12222
Q ss_pred hcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 166 EIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 166 ~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
... ..+|+++...+ ...+..+.+.|+++|.++...
T Consensus 219 ~~~---~~~d~vl~~~g----------------~~~~~~~~~~l~~~g~~v~~g 253 (325)
T cd08264 219 EIT---KMADVVINSLG----------------SSFWDLSLSVLGRGGRLVTFG 253 (325)
T ss_pred HHh---CCCCEEEECCC----------------HHHHHHHHHhhccCCEEEEEe
Confidence 222 24777775521 147788999999999998654
No 486
>PRK08703 short chain dehydrogenase; Provisional
Probab=84.31 E-value=6.6 Score=32.54 Aligned_cols=48 Identities=10% Similarity=0.010 Sum_probs=33.3
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhh
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDK 144 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~ 144 (267)
++.+||-.|+ +|.++..+++.+.. .+.+|+.++.+++..+...+.+..
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~--~g~~V~~~~r~~~~~~~~~~~l~~ 52 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAA--AGATVILVARHQKKLEKVYDAIVE 52 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHH--cCCEEEEEeCChHHHHHHHHHHHH
Confidence 3568999995 56666666665533 257899999999877666555543
No 487
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=84.24 E-value=15 Score=31.84 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=59.0
Q ss_pred hcCCCCEEEEec-CC-CChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChh----hh
Q 041272 91 VVRKGDTVVDAT-CG-NGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHS----RM 164 (267)
Q Consensus 91 ~l~~~~~VLDlG-cG-~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~----~l 164 (267)
.+.++.+||=.| +| .|..+..+|+..| .+|++++.+++..+.+++ .+ .. .++..... .+
T Consensus 137 ~~~~g~~vlI~g~~g~ig~~~~~lak~~G-----~~v~~~~~~~~~~~~~~~----~g----~~--~~~~~~~~~~~~~~ 201 (327)
T PRK10754 137 EIKPDEQFLFHAAAGGVGLIACQWAKALG-----AKLIGTVGSAQKAQRAKK----AG----AW--QVINYREENIVERV 201 (327)
T ss_pred CCCCCCEEEEEeCCcHHHHHHHHHHHHcC-----CEEEEEeCCHHHHHHHHH----CC----CC--EEEcCCCCcHHHHH
Confidence 356788888775 33 3778888888874 689999998887776643 22 11 11211111 12
Q ss_pred hhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 165 EEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 165 ~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.... ....+|+++...+ ...+.++.+.|+++|.++...
T Consensus 202 ~~~~-~~~~~d~vl~~~~----------------~~~~~~~~~~l~~~g~~v~~g 239 (327)
T PRK10754 202 KEIT-GGKKVRVVYDSVG----------------KDTWEASLDCLQRRGLMVSFG 239 (327)
T ss_pred HHHc-CCCCeEEEEECCc----------------HHHHHHHHHHhccCCEEEEEc
Confidence 2222 2235787775421 145667788899999997654
No 488
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=84.22 E-value=11 Score=32.51 Aligned_cols=100 Identities=17% Similarity=0.230 Sum_probs=58.3
Q ss_pred hcCCCCEEEEecCCC--ChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecCh-hhhhhc
Q 041272 91 VVRKGDTVVDATCGN--GYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEEI 167 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~--G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~ 167 (267)
.+.++.+||-.|.+. |..+..++... +.+|+.++.+++..+.++. .+ ....+.....+. ..+...
T Consensus 163 ~~~~~~~vlI~g~~~~iG~~~~~~~~~~-----g~~v~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~ 230 (342)
T cd08266 163 RLRPGETVLVHGAGSGVGSAAIQIAKLF-----GATVIATAGSEDKLERAKE----LG---ADYVIDYRKEDFVREVREL 230 (342)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHH----cC---CCeEEecCChHHHHHHHHH
Confidence 356788999888764 56666677665 4689999998877666543 12 000111111000 112222
Q ss_pred CCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 168 VPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
.. ...+|.++.+.+. ..+.++.+.|+++|.++...
T Consensus 231 ~~-~~~~d~~i~~~g~----------------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 231 TG-KRGVDVVVEHVGA----------------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred hC-CCCCcEEEECCcH----------------HHHHHHHHHhhcCCEEEEEe
Confidence 22 2357888776421 35677788899999987654
No 489
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=84.17 E-value=15 Score=31.86 Aligned_cols=102 Identities=25% Similarity=0.157 Sum_probs=55.4
Q ss_pred hcCCCCEEEEecCCC-ChHHHHHHHhcCCCCCCcEEEEEeC--ChHHHHHHHHHHhhccccccccceEEEecCh-hhhhh
Q 041272 91 VVRKGDTVVDATCGN-GYDTLMMLKMVADESSAGCVYGLDI--QSEALKSTSSLLDKTTSKAEKGLVKLFNMCH-SRMEE 166 (267)
Q Consensus 91 ~l~~~~~VLDlGcG~-G~~~~~la~~~~~~~p~~~v~giD~--s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~-~~l~~ 166 (267)
.++++.+||-.|+|. |..+..+|+..+ .+|+.+.. +++..+.+++ .+ ...+.....+. ..+..
T Consensus 161 ~~~~g~~vlI~g~g~~g~~~~~la~~~G-----~~v~~~~~~~~~~~~~~~~~----~g----~~~~~~~~~~~~~~l~~ 227 (306)
T cd08258 161 GIRPGDTVVVFGPGPIGLLAAQVAKLQG-----ATVVVVGTEKDEVRLDVAKE----LG----ADAVNGGEEDLAELVNE 227 (306)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-----CEEEEECCCCCHHHHHHHHH----hC----CcccCCCcCCHHHHHHH
Confidence 356788887777653 666677777764 56766643 3333333332 12 01110001111 11222
Q ss_pred cCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEec
Q 041272 167 IVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVYV 221 (267)
Q Consensus 167 ~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 221 (267)
.. ....+|+++...+. ...+....+.|+++|.++.....
T Consensus 228 ~~-~~~~vd~vld~~g~---------------~~~~~~~~~~l~~~G~~v~~g~~ 266 (306)
T cd08258 228 IT-DGDGADVVIECSGA---------------VPALEQALELLRKGGRIVQVGIF 266 (306)
T ss_pred Hc-CCCCCCEEEECCCC---------------hHHHHHHHHHhhcCCEEEEEccc
Confidence 22 22357887766321 25778889999999999866554
No 490
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=84.16 E-value=5.6 Score=34.76 Aligned_cols=81 Identities=17% Similarity=0.109 Sum_probs=46.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh---hcCCC
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME---EIVPK 170 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~---~~~~~ 170 (267)
.+++||-.| |+|.++..+++.+-. .+.+|++++.++.............+ ...+++++.+|..+.. ..+.
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~--~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~- 76 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLF--RGYTINATVRDPKDRKKTDHLLALDG---AKERLKLFKADLLDEGSFELAID- 76 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHH--CCCEEEEEEcCCcchhhHHHHHhccC---CCCceEEEeCCCCCchHHHHHHc-
Confidence 356888887 678888888876533 14688888777654433322221111 1245777766655432 2222
Q ss_pred CCcEEEEEEeCCC
Q 041272 171 STAVRLVAFNLGY 183 (267)
Q Consensus 171 ~~~~d~ii~~~~~ 183 (267)
.+|.++.+.+.
T Consensus 77 --~~d~vih~A~~ 87 (325)
T PLN02989 77 --GCETVFHTASP 87 (325)
T ss_pred --CCCEEEEeCCC
Confidence 37888888764
No 491
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=84.13 E-value=10 Score=36.71 Aligned_cols=98 Identities=10% Similarity=0.009 Sum_probs=52.7
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhcCCCC-CcE
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEIVPKS-TAV 174 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~-~~~ 174 (267)
++|+=+|+ |..+..+++.+.. .+.+++.+|.+++.++.+++. ....+.+|..+...+...+ .+.
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A 465 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMA--NKMRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKA 465 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccC
Confidence 45665554 5666666654432 146899999999999988651 2345566655443322111 145
Q ss_pred EEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEEe
Q 041272 175 RLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 175 d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
|.++...+. .+....+. ...|.+.|...++....
T Consensus 466 ~~vv~~~~d-----------~~~n~~i~-~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 466 EAIVITCNE-----------PEDTMKIV-ELCQQHFPHLHILARAR 499 (601)
T ss_pred CEEEEEeCC-----------HHHHHHHH-HHHHHHCCCCeEEEEeC
Confidence 556555211 11122233 33455678877765443
No 492
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=84.12 E-value=16 Score=33.61 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=23.9
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHH
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKST 138 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a 138 (267)
++|-=||.|. .+..+|..+-. -+.+|+++|++++.++..
T Consensus 4 ~kI~VIGlG~--~G~~~A~~La~--~G~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 4 ETISVIGLGY--IGLPTAAAFAS--RQKQVIGVDINQHAVDTI 42 (415)
T ss_pred cEEEEECcch--hhHHHHHHHHh--CCCEEEEEeCCHHHHHHH
Confidence 4666777765 33333332211 046899999999988763
No 493
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=84.10 E-value=23 Score=29.61 Aligned_cols=80 Identities=14% Similarity=0.005 Sum_probs=43.8
Q ss_pred CCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---c----
Q 041272 95 GDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I---- 167 (267)
Q Consensus 95 ~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~---- 167 (267)
++++|=.|++ |.++..+++.+-. .+.+|+.+|.++.. +...+.+...+ .++.++..|..+... .
T Consensus 8 ~k~vlVtGas-~gIG~~la~~l~~--~G~~v~~~~r~~~~-~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~ 78 (260)
T PRK12823 8 GKVVVVTGAA-QGIGRGVALRAAA--EGARVVLVDRSELV-HEVAAELRAAG-----GEALALTADLETYAGAQAAMAAA 78 (260)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHH--CCCEEEEEeCchHH-HHHHHHHHhcC-----CeEEEEEEeCCCHHHHHHHHHHH
Confidence 5678888855 5556555554432 15789999998643 33333333322 344455444443211 1
Q ss_pred CCCCCcEEEEEEeCCC
Q 041272 168 VPKSTAVRLVAFNLGY 183 (267)
Q Consensus 168 ~~~~~~~d~ii~~~~~ 183 (267)
......+|.++.+.+.
T Consensus 79 ~~~~~~id~lv~nAg~ 94 (260)
T PRK12823 79 VEAFGRIDVLINNVGG 94 (260)
T ss_pred HHHcCCCeEEEECCcc
Confidence 1112368999998764
No 494
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.03 E-value=5.8 Score=33.49 Aligned_cols=117 Identities=11% Similarity=0.142 Sum_probs=63.0
Q ss_pred CCCEEEEecCC-CChHHHHHHHhcCCCCCCcEEEEEeCCh--HHHHHHHHHHhhccccccccceEEEecChhhhhh---c
Q 041272 94 KGDTVVDATCG-NGYDTLMMLKMVADESSAGCVYGLDIQS--EALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---I 167 (267)
Q Consensus 94 ~~~~VLDlGcG-~G~~~~~la~~~~~~~p~~~v~giD~s~--~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~ 167 (267)
.+.++|-.|.| ++.++..+|+.+-. .+.+|+.++.+. +.++...+.+ + .++.++..|..+... .
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~--~G~~v~l~~r~~~~~~~~~~~~~~---~-----~~~~~~~~Dv~~~~~i~~~ 75 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQE--QGAEVVLTGFGRALRLTERIAKRL---P-----EPAPVLELDVTNEEHLASL 75 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHH--CCCEEEEecCccchhHHHHHHHhc---C-----CCCcEEeCCCCCHHHHHHH
Confidence 35689999985 56777777765432 157899888764 3333332222 1 234444444443322 1
Q ss_pred ----CCCCCcEEEEEEeCCCCCCCC--Cceee-chh-----------hHHHHHHHHHhcccCCcEEEEEEe
Q 041272 168 ----VPKSTAVRLVAFNLGYLPGGD--KSVIT-TSE-----------TTKMALEAAERILIPGGLISMVVY 220 (267)
Q Consensus 168 ----~~~~~~~d~ii~~~~~lp~~d--~~~~~-~~~-----------~~~~~l~~~~~~LkpgG~l~i~~~ 220 (267)
......+|+++.|.+..+... ..+.. ..+ .+-.+.+.+...++++|.++....
T Consensus 76 ~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~ 146 (256)
T PRK07889 76 ADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDF 146 (256)
T ss_pred HHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEee
Confidence 112246899999988754210 01111 111 122345566777788887765543
No 495
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.02 E-value=7.6 Score=33.49 Aligned_cols=40 Identities=10% Similarity=-0.025 Sum_probs=24.7
Q ss_pred EEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHH
Q 041272 97 TVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSS 140 (267)
Q Consensus 97 ~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~ 140 (267)
+|.=||+|. ++..++..+.. .+.+|+++|.+++.++.+++
T Consensus 2 ~I~IIG~G~--mG~sla~~L~~--~g~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 2 KIGIVGLGL--IGGSLGLDLRS--LGHTVYGVSRRESTCERAIE 41 (279)
T ss_pred eEEEEeecH--HHHHHHHHHHH--CCCEEEEEECCHHHHHHHHH
Confidence 466677665 44333333211 03589999999988777654
No 496
>PRK07102 short chain dehydrogenase; Provisional
Probab=84.02 E-value=14 Score=30.59 Aligned_cols=82 Identities=11% Similarity=0.037 Sum_probs=49.8
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cCCC-C
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IVPK-S 171 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~~~-~ 171 (267)
++||-.| |+|.++..+++++-. -+.+|+.++.+++..+...+.+...+ ..++.++..|..+..+ .... .
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~--~G~~Vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAA--AGARLYLAARDVERLERLADDLRARG----AVAVSTHELDILDTASHAAFLDSLP 74 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhc----CCeEEEEecCCCChHHHHHHHHHHh
Confidence 4678777 456777777765533 15689999999877665555444322 3467777666554432 1111 1
Q ss_pred CcEEEEEEeCCCC
Q 041272 172 TAVRLVAFNLGYL 184 (267)
Q Consensus 172 ~~~d~ii~~~~~l 184 (267)
..+|.++.+.+..
T Consensus 75 ~~~d~vv~~ag~~ 87 (243)
T PRK07102 75 ALPDIVLIAVGTL 87 (243)
T ss_pred hcCCEEEECCcCC
Confidence 2468898887654
No 497
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=84.00 E-value=10 Score=31.83 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=45.4
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhh---cC--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEE---IV-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~---~~-- 168 (267)
.++++|-.|+++ .++..+++++-. .+.+|+.++.++. +...+.++..+ .++.++..|..+... ..
T Consensus 7 ~~k~~lItGas~-gIG~aia~~l~~--~G~~vv~~~~~~~--~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 7 NGKVAIITGCNT-GLGQGMAIGLAK--AGADIVGVGVAEA--PETQAQVEALG-----RKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHH--CCCEEEEecCchH--HHHHHHHHHcC-----CeEEEEEeCCCCHHHHHHHHHH
Confidence 467889888655 555555554322 1678998887642 22333333322 345555555443322 11
Q ss_pred --CCCCcEEEEEEeCCCCC
Q 041272 169 --PKSTAVRLVAFNLGYLP 185 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~lp 185 (267)
.....+|+++.+.+...
T Consensus 77 ~~~~~g~iD~lv~~ag~~~ 95 (251)
T PRK12481 77 AVEVMGHIDILINNAGIIR 95 (251)
T ss_pred HHHHcCCCCEEEECCCcCC
Confidence 11236899999987643
No 498
>PRK12939 short chain dehydrogenase; Provisional
Probab=83.90 E-value=13 Score=30.77 Aligned_cols=83 Identities=10% Similarity=0.016 Sum_probs=50.9
Q ss_pred CCCEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhhhc---C--
Q 041272 94 KGDTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRMEEI---V-- 168 (267)
Q Consensus 94 ~~~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~-- 168 (267)
.+.+||=.| |+|.++..+++.+-. .+.+|+.++.+++.++...+.++..+ .++.++..|..+.... .
T Consensus 6 ~~~~vlItG-a~g~iG~~la~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 6 AGKRALVTG-AARGLGAAFAEALAE--AGATVAFNDGLAAEARELAAALEAAG-----GRAHAIAADLADPASVQRFFDA 77 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 356788666 467777777765532 14689999998887766655554322 3566666555443221 1
Q ss_pred --CCCCcEEEEEEeCCCC
Q 041272 169 --PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 --~~~~~~d~ii~~~~~l 184 (267)
.....+|.++.+.+..
T Consensus 78 ~~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 78 AAAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 1113589999887663
No 499
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=83.87 E-value=11 Score=33.07 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=53.8
Q ss_pred hcCCCCEEEEecC--CCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecC------h-
Q 041272 91 VVRKGDTVVDATC--GNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMC------H- 161 (267)
Q Consensus 91 ~l~~~~~VLDlGc--G~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~------~- 161 (267)
.++++.+||=.|+ +.|..+..+|+..+ .+++.+..+.+..+..++.+++.+ ... ++... .
T Consensus 143 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~g-----~~v~~~~~~~~~~~~~~~~~~~~g----~~~--~~~~~~~~~~~~~ 211 (341)
T cd08290 143 KLQPGDWVIQNGANSAVGQAVIQLAKLLG-----IKTINVVRDRPDLEELKERLKALG----ADH--VLTEEELRSLLAT 211 (341)
T ss_pred ccCCCCEEEEccchhHHHHHHHHHHHHcC-----CeEEEEEcCCCcchhHHHHHHhcC----CCE--EEeCcccccccHH
Confidence 4578889998876 33778888888864 566666545421122222222223 111 11111 1
Q ss_pred hhhhhcCCCCCcEEEEEEeCCCCCCCCCceeechhhHHHHHHHHHhcccCCcEEEEEE
Q 041272 162 SRMEEIVPKSTAVRLVAFNLGYLPGGDKSVITTSETTKMALEAAERILIPGGLISMVV 219 (267)
Q Consensus 162 ~~l~~~~~~~~~~d~ii~~~~~lp~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 219 (267)
..+..... . .+|+++...+- ..+.++.+.|+++|.++...
T Consensus 212 ~~i~~~~~-~-~~d~vld~~g~----------------~~~~~~~~~l~~~G~~v~~g 251 (341)
T cd08290 212 ELLKSAPG-G-RPKLALNCVGG----------------KSATELARLLSPGGTMVTYG 251 (341)
T ss_pred HHHHHHcC-C-CceEEEECcCc----------------HhHHHHHHHhCCCCEEEEEe
Confidence 11222222 2 57888765321 23456778899999987553
No 500
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=83.87 E-value=5.8 Score=33.03 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=49.1
Q ss_pred CEEEEecCCCChHHHHHHHhcCCCCCCcEEEEEeCChHHHHHHHHHHhhccccccccceEEEecChhhhh-------hcC
Q 041272 96 DTVVDATCGNGYDTLMMLKMVADESSAGCVYGLDIQSEALKSTSSLLDKTTSKAEKGLVKLFNMCHSRME-------EIV 168 (267)
Q Consensus 96 ~~VLDlGcG~G~~~~~la~~~~~~~p~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~~~~~l~-------~~~ 168 (267)
.+||=.| |+|.++..+++.+-. .+.+|++++.+++..+.....+...+ .++.++..|..+.. ...
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~--~g~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~ 73 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAA--AGANVVVNDLGEAGAEAAAKVATDAG-----GSVIYLVADVTKEDEIADMIAAAA 73 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcC-----CceEEEECCCCCHHHHHHHHHHHH
Confidence 3566666 567777777766432 14689999999877666555444322 45666665555433 211
Q ss_pred CCCCcEEEEEEeCCCC
Q 041272 169 PKSTAVRLVAFNLGYL 184 (267)
Q Consensus 169 ~~~~~~d~ii~~~~~l 184 (267)
......|.++.+.+..
T Consensus 74 ~~~~~~d~vi~~a~~~ 89 (255)
T TIGR01963 74 AEFGGLDILVNNAGIQ 89 (255)
T ss_pred HhcCCCCEEEECCCCC
Confidence 1123578888887653
Done!