BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041273
         (362 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CU7|A Chain A, Human Complement Component 5
 pdb|3CU7|B Chain B, Human Complement Component 5
 pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
 pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
 pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
            Beta-Grasp Domain Of Ssl7
 pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
            Beta-Grasp Domain Of Ssl7
 pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
          Length = 1676

 Score = 31.2 bits (69), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 203  FSLHDIAYTEIFSLWAISPWKYGGLSYSTENA-GQVLAISGFSLLVFQLTL 252
             +L DI Y      W     +YGG  YST++    +  ++ +SLLV QL L
Sbjct: 1259 LNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRL 1309


>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
 pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
          Length = 1676

 Score = 31.2 bits (69), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 203  FSLHDIAYTEIFSLWAISPWKYGGLSYSTENA-GQVLAISGFSLLVFQLTL 252
             +L DI Y      W     +YGG  YST++    +  ++ +SLLV QL L
Sbjct: 1259 LNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRL 1309


>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
          Length = 1580

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 203  FSLHDIAYTEIFSLWAISPWKYGGLSYSTENA-GQVLAISGFSLLVFQLTL 252
             +L DI Y      W     +YGG  YST++    +  ++ +SLLV QL L
Sbjct: 1163 LNLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRL 1213


>pdb|2GFP|A Chain A, Structure Of The Multidrug Transporter Emrd From
          Escherichia Coli
 pdb|2GFP|B Chain B, Structure Of The Multidrug Transporter Emrd From
          Escherichia Coli
          Length = 375

 Score = 30.4 bits (67), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 2  LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVS 39
          ++ + +G ++DR GR+PVI++G +++ +  TL  ++ S
Sbjct: 50 VSQLFYGPISDRVGRRPVILVG-MSIFMLATLVAVTTS 86


>pdb|1CPW|A Chain A, Recombinant Sperm Whale Myoglobin L104w Mutant (Met)
          Length = 154

 Score = 28.1 bits (61), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 114 MFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVSLDVSCDALESACGSNAEFK 173
           +F   P  L       F    T A     E L KH   GV++  +  A+    G +    
Sbjct: 33  LFKSHPETLEKF--DRFKHLKTEAEMKASEDLKKH---GVTVLTALGAILKKKGHHEAEL 87

Query: 174 QDEGSEEATAKKSLMKNWPFISSTIVYCVFSLH 206
           +      AT  K  +K W FIS  I++ + S H
Sbjct: 88  KPLAQSHATKHKIPIKYWEFISEAIIHVLHSRH 120


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,686,745
Number of Sequences: 62578
Number of extensions: 372222
Number of successful extensions: 1033
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 8
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)