Query 041273
Match_columns 362
No_of_seqs 366 out of 1682
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 08:51:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.8E-31 6E-36 245.8 17.2 343 2-362 70-468 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 7.1E-31 2.4E-35 239.1 20.5 322 2-354 77-432 (451)
3 3o7q_A L-fucose-proton symport 100.0 3.7E-30 1.2E-34 233.6 23.5 308 2-354 76-431 (438)
4 2gfp_A EMRD, multidrug resista 99.9 8.6E-28 3E-32 213.5 9.9 270 2-325 50-324 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 5E-26 1.7E-30 209.5 19.3 331 2-354 69-470 (491)
6 2cfq_A Lactose permease; trans 99.9 1.2E-23 4.2E-28 189.4 11.1 316 2-361 58-404 (417)
7 2xut_A Proton/peptide symporte 99.8 1.5E-20 5.1E-25 174.3 10.8 107 2-115 69-181 (524)
8 2cfq_A Lactose permease; trans 99.2 1.7E-11 5.9E-16 110.0 6.1 128 2-145 274-404 (417)
9 1pw4_A Glycerol-3-phosphate tr 99.1 1.1E-10 3.7E-15 105.7 6.9 124 2-141 303-433 (451)
10 4aps_A DI-OR tripeptide H+ sym 98.9 1.7E-09 5.9E-14 99.0 8.8 99 2-100 334-447 (491)
11 4gc0_A D-xylose-proton symport 98.9 9.2E-09 3.1E-13 94.1 12.1 135 2-147 327-469 (491)
12 3o7q_A L-fucose-proton symport 98.9 4.4E-09 1.5E-13 94.7 9.7 104 2-115 310-415 (438)
13 2gfp_A EMRD, multidrug resista 98.8 7.7E-08 2.6E-12 84.7 14.2 148 199-360 8-178 (375)
14 2xut_A Proton/peptide symporte 98.7 3.9E-07 1.3E-11 84.0 14.4 151 191-353 12-196 (524)
15 2g9p_A Antimicrobial peptide l 59.7 2.6 9E-05 19.2 0.5 14 6-19 2-15 (26)
16 1cmk_I CAMP-dependent protein 21.0 20 0.00068 17.2 -0.0 10 11-20 9-18 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=1.8e-31 Score=245.84 Aligned_cols=343 Identities=14% Similarity=0.063 Sum_probs=224.9
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHhhhcCcchhH-HH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFG------------------LSVSFWMAIATRFLLGALNGLLGPI-KA 62 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~-~~ 62 (362)
+|++++|+++||+|||++++++.+++.++.++++ +++|+++++++|+++|++.|...+. ..
T Consensus 70 iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~ 149 (491)
T 4gc0_A 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPM 149 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999988 4789999999999999999988887 99
Q ss_pred HHHhhhccccchhhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcc
Q 041273 63 YACEILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIP 142 (362)
Q Consensus 63 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (362)
+++|+.|+++|++..+..+.+...|..+++.++..... ..+|.... .+.|+.+.....+..++.++..+++|
T Consensus 150 ~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p 221 (491)
T 4gc0_A 150 YIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR-------SGDASWLN-TDGWRYMFASECIPALLFLMLLYTVP 221 (491)
T ss_dssp HHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TSCTTTTT-TTHHHHHHHTTHHHHHHHHHHGGGSC
T ss_pred HHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc-------cccccccc-chhhHHHhhhhhhhhhhhhhhhhcCC
Confidence 99999999999999999999999999999999888776 33333322 34455555677777777777888999
Q ss_pred cccCCCCcCCccccccchhhhhhcCCC---Cccccc----cCcccchhhhcccccchhHHHHHHHHHHHHHHh-HHHHHH
Q 041273 143 ETLHKHNEDGVSLDVSCDALESACGSN---AEFKQD----EGSEEATAKKSLMKNWPFISSTIVYCVFSLHDI-AYTEIF 214 (362)
Q Consensus 143 e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 214 (362)
|+|++...++++++ ..+.+++..+.+ ++..+. ++++........++.++.........+...... ....+.
T Consensus 222 eSp~~L~~~~~~~~-a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (491)
T 4gc0_A 222 ESPRWLMSRGKQEQ-AEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYA 300 (491)
T ss_dssp CCHHHHHHTTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CChHHHHHcCchhH-HHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcc
Confidence 99987554443332 112221111110 000000 011111112223333443333333222222111 111122
Q ss_pred HhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 041273 215 SLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALL 294 (362)
Q Consensus 215 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (362)
+..... .+.+...........++...++. ++.+++.||+|||+.+..+.....++++.+.......... +..
T Consensus 301 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~ 372 (491)
T 4gc0_A 301 PEVFKT------LGASTDIALLQTIIVGVINLTFT-VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG-IVA 372 (491)
T ss_dssp HHHHHH------SSCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCH-HHH
T ss_pred hHHHHh------cCCCccchhhHHHHHHHHHHHHH-HHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccch-HHH
Confidence 222222 46666666666677777778876 8889999999999999988888888776665544333222 222
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhcccc-ccCCCCC----------------------------CChhHHHHHHHHHH
Q 041273 295 INCASVMKNVLSVSIMTGLFLLQNRAVSQK-RQGAGFL----------------------------PGNQMIFFILNLVE 345 (362)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~----------------------------~g~~~~f~~~~~~~ 345 (362)
......+...++.+..|..+.+.+|.+|++ |..+.-. .+...+|++.++++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~ 452 (491)
T 4gc0_A 373 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 452 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 222333333345555677889999999943 2211100 02335788889999
Q ss_pred HHHHHhhccccccccCC
Q 041273 346 ALGVILTFKPFLIQRAT 362 (362)
Q Consensus 346 ~i~~~~~~~~~l~~~~~ 362 (362)
+++.++.++ ++||+|+
T Consensus 453 ~~~~i~~~~-~~PETkg 468 (491)
T 4gc0_A 453 VLAALFMWK-FVPETKG 468 (491)
T ss_dssp HHHHHHHHH-HCCCCTT
T ss_pred HHHHHHHHh-eecCCCC
Confidence 998887764 8999874
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=7.1e-31 Score=239.09 Aligned_cols=322 Identities=13% Similarity=0.048 Sum_probs=230.7
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhh
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGL----SVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLG 76 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~ 76 (362)
++++++|+++||+|||++++++.++.+++.+++++ ++|++.++++|+++|++.+...+. .+++.|++|+|+|+++
T Consensus 77 ~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 156 (451)
T 1pw4_A 77 FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 156 (451)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHH
T ss_pred HHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHH
Confidence 56899999999999999999999999999999999 999999999999999999988887 9999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhcCccccCCcccc-cccccccccchhhHHHHHHHHHH-HHHHHhhcccccCCCCcCCcc
Q 041273 77 LSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFS-KESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHKHNEDGVS 154 (362)
Q Consensus 77 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~ 154 (362)
+++.+...++|..++|.+++++.+ ..| ||+.| ++.+++.++ .++..+.+||++++.+.++++
T Consensus 157 ~~~~~~~~~~g~~~g~~~~~~l~~-------~~g~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (451)
T 1pw4_A 157 VSVWNCAHNVGGGIPPLLFLLGMA-------WFNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIE 220 (451)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHH-------HTCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HhccHHHHH---------HHHHHHHHHHHHHHHhhccCCHhhcCCCChh
Confidence 999999999999999999999887 777 98877 555555554 444556788876654322211
Q ss_pred ccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhh
Q 041273 155 LDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENA 234 (362)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 234 (362)
+.+..+. + + .++.++++....+...++.+|+|+++...+..++..........+.|.|+.+. +|+++.+.
T Consensus 221 ~~~~~~~-~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~ 290 (451)
T 1pw4_A 221 EYKNDYP-D---D-YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKS 290 (451)
T ss_dssp TTCCC------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHH
T ss_pred hhccccc-c---c-chhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHH
Confidence 1100000 0 0 00000001111112246788999999988888888888888888889888765 78999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 041273 235 GQVLAISGFSLLVFQLTLYPYVERMI--GPIIITRIAGVLSI-PLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMT 311 (362)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (362)
+.+.+..+++.++++ ++.+++.||+ ++|+.+..+..+.. ++++.+.+... ...+. ......+.+.+.....+
T Consensus 291 ~~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~g~~~~~~~~ 365 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA---GNPTV-DMICMIVIGFLIYGPVM 365 (451)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCT---TCHHH-HHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcc---cCHHH-HHHHHHHHHHHHhchHH
Confidence 999999999999998 8999999999 99988877766655 44444332211 11222 22222222333344456
Q ss_pred HHHHHHhhhccccccCCC--------------C----------CCChhHHHHHHHHHHHHHHHhhcc
Q 041273 312 GLFLLQNRAVSQKRQGAG--------------F----------LPGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 312 ~~~~~~~~~~p~~~~~~~--------------~----------~~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
....+..|..|+++.+.. . ..|++.+|++.+++.+++.++.+.
T Consensus 366 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 366 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 667888898884432110 0 015778888888888888776654
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=3.7e-30 Score=233.56 Aligned_cols=308 Identities=12% Similarity=0.101 Sum_probs=221.6
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLF---GLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGL 77 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~ 77 (362)
+++++.|+++||+|||++++.+.++.+++.+++ .++++++.+++.|+++|++.+...+. .++++|++|+|+|++++
T Consensus 76 i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~ 155 (438)
T 3o7q_A 76 IIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRL 155 (438)
T ss_dssp TTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHH
T ss_pred HHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHH
Confidence 578999999999999999999999999999999 88899999999999999999988877 99999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhhhhc-CccccCC------------------cccccccccccccchhhHHHHHHHHHHHHHHH
Q 041273 78 STLSTAWGTGLIIGPAVGGFLA-QPAEKYP------------------KAFSKESMFGKFPYFLPCLCMSLFAFAVTIAS 138 (362)
Q Consensus 78 ~~~~~~~~~g~~~g~~~~~~l~-~~~~~~~------------------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (362)
++.+...++|..++|.+++.+. +..+... ...+||+.| ++.+...++..+..
T Consensus 156 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~---------~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 156 NLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPY---------MIIVAIVLLVALLI 226 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHH---------HHHHHHHHHHHHHH
Confidence 9999999999999999999998 4110000 000055444 44444444333333
Q ss_pred hh--cccccCCCCcCCccccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHh
Q 041273 139 CW--IPETLHKHNEDGVSLDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSL 216 (362)
Q Consensus 139 ~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (362)
.+ .||++++++++++ +++...+.++++|+|+++...+..++..........+.|.
T Consensus 227 ~~~~~p~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (438)
T 3o7q_A 227 MLTKFPALQSDNHSDAK-----------------------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIR 283 (438)
T ss_dssp HHCCCCCCTTTCCCCSS-----------------------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCccccccccccc-----------------------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3443322111111 1113456778899999999988888888877888888888
Q ss_pred H-hcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 041273 217 W-AISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLI 295 (362)
Q Consensus 217 ~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (362)
| ..+. +|+++.+.+...+...++..+++ ++.+++.||+++|+.+..+..+..++.+.+.+.... +. .
T Consensus 284 ~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~ 351 (438)
T 3o7q_A 284 YAVEEI-----PGMTAGFAANYLTGTMVCFFIGR-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-----VG-L 351 (438)
T ss_dssp HHHHHS-----TTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHH-----HH-H
T ss_pred Hhhhcc-----CCcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCc-----HH-H
Confidence 8 6665 68999999999999999999998 899999999999999988888777766555443321 11 1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCCC---------------------CC-hhHHHHHHHHHHHHHHHhhc
Q 041273 296 NCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGFL---------------------PG-NQMIFFILNLVEALGVILTF 353 (362)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---------------------~g-~~~~f~~~~~~~~i~~~~~~ 353 (362)
....+.+.+.....|....+..|..|+++..+... .| ++..|.+.+++.++..++.+
T Consensus 352 -~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 352 -IALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp -HHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 11122233444556778888788888544311100 04 66777777666666555444
Q ss_pred c
Q 041273 354 K 354 (362)
Q Consensus 354 ~ 354 (362)
+
T Consensus 431 ~ 431 (438)
T 3o7q_A 431 F 431 (438)
T ss_dssp T
T ss_pred H
Confidence 3
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.94 E-value=8.6e-28 Score=213.55 Aligned_cols=270 Identities=14% Similarity=0.146 Sum_probs=196.4
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
+++++.|+++||+|||+++..+..+.+++.++..+++|++.+++.|+++|++.+...+. .+++.|++|+|+|+++++..
T Consensus 50 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (375)
T 2gfp_A 50 VSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLL 129 (375)
T ss_dssp HHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999988887 99999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHH-HHhhcccccCCCCcCCccccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTI-ASCWIPETLHKHNEDGVSLDVSC 159 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~ 159 (362)
+...++|..++|.+++++.+ ..|||..+ .+.++..++..+ ..+.+||+++++++++ +
T Consensus 130 ~~~~~~g~~~~~~~~~~l~~-------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--- 187 (375)
T 2gfp_A 130 NMGILVSPLLAPLIGGLLDT-------MWNWRACY---------LFLLVLCAGVTFSMARWMPETRPVDAPRT---R--- 187 (375)
T ss_dssp HHHHHHHHHHHHHHHHHSSC-------HHHHHHHH---------HHHHHHHHHHHCCCCCSSCCCSTTTCCCC---C---
T ss_pred HHHHHHHHHhhHHHHHHHHH-------hccHHHHH---------HHHHHHHHHHHHHHHHHCcccCCCCcccc---c---
Confidence 99999999999999999988 67887766 555555444333 3455677654322111 0
Q ss_pred hhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHH
Q 041273 160 DALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 239 (362)
..++.++.+|+|+++...+..++..........+.|.|..+. +|+++.+.+.+..
T Consensus 188 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~ 242 (375)
T 2gfp_A 188 --------------------LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-----LGLSSMTVSILFI 242 (375)
T ss_dssp --------------------TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-----HHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHH
Confidence 123456678888888888877777766666666666665543 6888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH-HHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 041273 240 ISGFSLLVFQLTLYPYVERMIGPIIITRIAGVL-SIPLLT--SYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLL 316 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (362)
..+++..+++ ++.+++.||.+++. ..+... ...+.. ....... . ..+ .......+.+.+.....+....+
T Consensus 243 ~~~~~~~~~~-~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~l~g~~~~~~~~~~~~~ 315 (375)
T 2gfp_A 243 LPIPAAFFGA-WFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGV-M--NVW-TLLVPAALFFFGAGMLFPLATSG 315 (375)
T ss_dssp THHHHHHHHH-HHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHH-H--HHH-HHHHHHHHHHHHHHHTSSTTHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhcc-c--cHH-HHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999988887 88899999987732 222222 222211 1111111 1 112 12222233333445556788888
Q ss_pred Hhhhccccc
Q 041273 317 QNRAVSQKR 325 (362)
Q Consensus 317 ~~~~~p~~~ 325 (362)
..|..|+.|
T Consensus 316 ~~~~~p~~~ 324 (375)
T 2gfp_A 316 AMEPFPFLA 324 (375)
T ss_dssp HHTHHHHHH
T ss_pred HHHhCCccc
Confidence 889888443
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.94 E-value=5e-26 Score=209.46 Aligned_cols=331 Identities=12% Similarity=0.089 Sum_probs=203.0
Q ss_pred cccchhhhhhcc-cCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhcccc--chhhH
Q 041273 2 LTSVLWGMVADR-CGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQH--KTLGL 77 (362)
Q Consensus 2 i~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~--r~~~~ 77 (362)
+++++.|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+. .++++|++|+++ |+.++
T Consensus 69 ~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 148 (491)
T 4aps_A 69 LSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGF 148 (491)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHH
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeee
Confidence 578999999999 89999999999999999999999999999999999999999988887 999999999988 77788
Q ss_pred HHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHh-hcccccCCCCcCCc---
Q 041273 78 STLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASC-WIPETLHKHNEDGV--- 153 (362)
Q Consensus 78 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~--- 153 (362)
+.++...++|..++|.+++.+.+ ..|||+.| .+.++..++..+... ..|+..+++.++.+
T Consensus 149 ~~~~~~~~~g~~~~~~~~~~l~~-------~~g~~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4aps_A 149 SIFVFGINLGAFIAPLIVGAAQE-------AAGYHVAF---------SLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HSCHHHHH---------HHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHH---------HHHHHHHHHHHHHHHHhCcccccccccCCCCcc
Confidence 88999999999999999999987 77887776 444444443333332 22322211111111
Q ss_pred cccccchhhhh---------------hcCCCCcccccc------------------CcccchhhhcccccchhHHHHHHH
Q 041273 154 SLDVSCDALES---------------ACGSNAEFKQDE------------------GSEEATAKKSLMKNWPFISSTIVY 200 (362)
Q Consensus 154 ~~~~~~~~~~~---------------~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 200 (362)
+.++..+..+. ...++.+.++.. .++......+..+........+..
T Consensus 213 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (491)
T 4aps_A 213 APEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAA 292 (491)
T ss_dssp SHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 11100110000 000000000000 000000111111222334444444
Q ss_pred HHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH-----HHHHHHHH
Q 041273 201 CVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITR-----IAGVLSIP 275 (362)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~-----~~~~~~~~ 275 (362)
.+...........++.|..+. .+.+..+.+......++...++. ++.+++.||++||+... .+..+..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~ 366 (491)
T 4aps_A 293 VLFWAIEEQGSVVLATFAAER-----VDSSWFPVSWFQSLNPLFIMLYT-PFFAWLWTAWKKNQPSSPTKFAVGLMFAGL 366 (491)
T ss_dssp HHHHHHHGGGGTHHHHHHHHS-----CCCSSSCSGGGTTHHHHHHHHHH-HHHHHHHHHTTTC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHH-----hccCccCHHHHhccchHHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 455555555566677776654 45555667777777788888887 78899999999886544 56666555
Q ss_pred HHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCCC---------------------
Q 041273 276 LLTSYTYIAMLS---GFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGFL--------------------- 331 (362)
Q Consensus 276 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--------------------- 331 (362)
+..++.+..... ....+....+...+.+.+.....+..+.+..|..|+++.+....
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 367 SFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp HHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555544433110 00111122233334344555556888899999999664432211
Q ss_pred -CChhHHHHHHHHHHHHHHHhhcc
Q 041273 332 -PGNQMIFFILNLVEALGVILTFK 354 (362)
Q Consensus 332 -~g~~~~f~~~~~~~~i~~~~~~~ 354 (362)
.++...|.+.+++.+++.++.+.
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 447 AKSEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp GSSTTHHHHHTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Confidence 14567788888887777766554
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.90 E-value=1.2e-23 Score=189.39 Aligned_cols=316 Identities=11% Similarity=0.087 Sum_probs=179.5
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHH---HHHhhhhhHH-HHHHHHHHHhhhcCcchhH-HHHHHhhhcc--ccch
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFN---TLFGLSVSFW-MAIATRFLLGALNGLLGPI-KAYACEILRD--QHKT 74 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~~-~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~--~~r~ 74 (362)
++++++|+++||+|||++++.+..+.+++. ....+++... .+...+++.|++.+...+. ...+.++.++ ++|+
T Consensus 58 i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 137 (417)
T 2cfq_A 58 LFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN 137 (417)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcc
Confidence 578999999999999999998887765532 2122332221 2344566666655543333 4444444443 4567
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhcccccCCCCcCCcc
Q 041273 75 LGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWIPETLHKHNEDGVS 154 (362)
Q Consensus 75 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 154 (362)
..++......++|..++|.+++++.+ .+||..| ++.++..++..+..+..||+++++.+++ +
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~--------~~~~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 199 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT--------INNQFVF---------WLGSGCALILAVLLFFAKTDAPSSATVA-N 199 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH--------HCSHHHH---------TTTTTTTTTHHHHSCSSCCCCSCSSCSS-S
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH--------hchhHHH---------HHHHHHHHHHHHHHHHcCcccccccccc-c
Confidence 77888888899999999999999874 3566555 3333333333333334444332111000 0
Q ss_pred ccccchhhhhhcCCCCccccccCcccchhhhcccccchhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccCCCchhh
Q 041273 155 LDVSCDALESACGSNAEFKQDEGSEEATAKKSLMKNWPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENA 234 (362)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 234 (362)
.+ + +++++....+.++++|+|+++...+..+........+...+|.|+.+.. +..+.+....
T Consensus 200 ~~--------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 261 (417)
T 2cfq_A 200 AV--------------G--ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF--ATGEQGTRVF 261 (417)
T ss_dssp SS--------------S--SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SSHHHHTHHH
T ss_pred cc--------------c--cccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCChhHH
Confidence 00 0 0000111234566788888877666544444444444455677764431 1112335566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 041273 235 GQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLTSYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLF 314 (362)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (362)
+...++..+...++. ++.+++.||+|+|+.+..+..+..+..+.+.+.. + .+... +...+.........+...
T Consensus 262 g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~---~--~~~~~-~~~~l~~~~~~~~~~~~~ 334 (417)
T 2cfq_A 262 GYVTTMGELLNASIM-FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT---S--ALEVV-ILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC---S--HHHHH-HHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc---c--HHHHH-HHHHHHHHHHHHHHHHHH
Confidence 777777777777876 8899999999999998877777666544443221 1 11111 111121222233334556
Q ss_pred HHHhhhccccccCC---C--CCC-------------------ChhHHHHHHHHHHHHHHHhhccccccccC
Q 041273 315 LLQNRAVSQKRQGA---G--FLP-------------------GNQMIFFILNLVEALGVILTFKPFLIQRA 361 (362)
Q Consensus 315 ~~~~~~~p~~~~~~---~--~~~-------------------g~~~~f~~~~~~~~i~~~~~~~~~l~~~~ 361 (362)
.+.+|..|++..+. . ... |++..|.+.+++.+++.++.+. ..+|+|
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~-~~~~~~ 404 (417)
T 2cfq_A 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF-TLSGPG 404 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT-SSCCSC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh-hhcCCC
Confidence 78888888443321 1 111 3567788888888888776654 344443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.83 E-value=1.5e-20 Score=174.34 Aligned_cols=107 Identities=17% Similarity=0.240 Sum_probs=98.1
Q ss_pred cccchhhhhhccc-CCchHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHH
Q 041273 2 LTSVLWGMVADRC-GRKPVIIIGCITVVIFNTLFGLSV-SFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLS 78 (362)
Q Consensus 2 i~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~ 78 (362)
+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+. .+++.|++|+++|+++.+
T Consensus 69 ~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 148 (524)
T 2xut_A 69 FFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK 148 (524)
T ss_dssp HTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHH
Confidence 5688999999999 999999999999999999999999 9999999999999999988887 999999999999987666
Q ss_pred H---HHHhhhhhhhhhhhhhhhhcCccccCCccccccccc
Q 041273 79 T---LSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMF 115 (362)
Q Consensus 79 ~---~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~ 115 (362)
. .+...++|..+||.+++.+.+ ..|||+.|
T Consensus 149 ~~~~~~~~~~~g~~~g~~~~~~l~~-------~~g~~~~f 181 (524)
T 2xut_A 149 AFDMFYFTINFGSFFASLSMPLLLK-------NFGAAVAF 181 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTHHHH-------TSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-------cccHHHHH
Confidence 6 999999999999999999987 67787766
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.18 E-value=1.7e-11 Score=109.99 Aligned_cols=128 Identities=11% Similarity=0.047 Sum_probs=99.2
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHH-
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLST- 79 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~- 79 (362)
++.++.|+++||+|||+++..+.++.+++..+.++.++.+.+++..++.+++.+...+. ..++.|.+|++.|+.+.+.
T Consensus 274 ~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 353 (417)
T 2cfq_A 274 SIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353 (417)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 35688999999999999999998888888888888888888888888888876655555 8899999999999999998
Q ss_pred HHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHH-hhccccc
Q 041273 80 LSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIAS-CWIPETL 145 (362)
Q Consensus 80 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~ 145 (362)
++....+|..++|.++|++.+ ..|++..| .+.+++.++..+.. ...||++
T Consensus 354 ~~~~~~lg~~~gp~l~G~l~~-------~~g~~~~f---------~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 354 FCFFKQLAMIFMSVLAGNMYE-------SIGFQGAY---------LVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HTTTHHHHHHHHTHHHHTHHH-------HSHHHHHH---------HHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHhHHHHHhhhhHHHHHH-------hcCcHHHH---------HHHHHHHHHHHHHHHhhhcCCC
Confidence 488888999999999999887 44544443 55555555544433 3445433
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.09 E-value=1.1e-10 Score=105.67 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=98.5
Q ss_pred cccchhhhhhccc--CCchHHHHHHHHHH-HHHHHHhhh--hhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchh
Q 041273 2 LTSVLWGMVADRC--GRKPVIIIGCITVV-IFNTLFGLS--VSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTL 75 (362)
Q Consensus 2 i~~~~~G~l~Dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~ 75 (362)
++.++.|+++||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|++.+...+. ..++.|.+|+++|++
T Consensus 303 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 382 (451)
T 1pw4_A 303 PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGT 382 (451)
T ss_dssp HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhh
Confidence 4678899999999 99999888877766 677766666 36777888888899987777666 899999999999999
Q ss_pred hHHHHHHhhhh-hhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHHHHHHHhhc
Q 041273 76 GLSTLSTAWGT-GLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFAVTIASCWI 141 (362)
Q Consensus 76 ~~~~~~~~~~~-g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (362)
++++.+....+ |..++|.+.+.+.+ ..||+..| ++.+++.++..+.....
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~-------~~g~~~~~---------~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVD-------FFGWDGGF---------MVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------SSCSHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCcHHHH---------HHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999988 55665544 55555555544444433
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.94 E-value=1.7e-09 Score=99.02 Aligned_cols=99 Identities=9% Similarity=0.056 Sum_probs=81.8
Q ss_pred cccchhhhhhcccCCchHHH-----HHHHHHHHHHHHHhhhh---------hHHHHHHHHHHHhhhcCcchhH-HHHHHh
Q 041273 2 LTSVLWGMVADRCGRKPVII-----IGCITVVIFNTLFGLSV---------SFWMAIATRFLLGALNGLLGPI-KAYACE 66 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~-----~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~~-~~~i~~ 66 (362)
++.++.|++.||+|||+... .+.++.+++..+..+.. +.+.+.+.-++.|++.+...+. ..++.|
T Consensus 334 ~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 413 (491)
T 4aps_A 334 LYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTK 413 (491)
T ss_dssp HHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35678899999999987655 77777777776666643 6777888888999998887776 999999
Q ss_pred hhccccchhhHHHHHHhhhhhhhhhhhhhhhhcC
Q 041273 67 ILRDQHKTLGLSTLSTAWGTGLIIGPAVGGFLAQ 100 (362)
Q Consensus 67 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 100 (362)
.+|+++|++++++.+....+|..++|.+.+.+.+
T Consensus 414 ~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 414 LAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988875
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.90 E-value=9.2e-09 Score=94.12 Aligned_cols=135 Identities=18% Similarity=0.170 Sum_probs=88.1
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhh-----hHHHHHHH-HHHHhhhcCcchhH-HHHHHhhhccccch
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSV-----SFWMAIAT-RFLLGALNGLLGPI-KAYACEILRDQHKT 74 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~-r~l~G~~~~~~~~~-~~~i~~~~~~~~r~ 74 (362)
++.++.+++.||+|||+.++.+.....++.+..+... +...+... -+..+.+.+ ..|. ..+.+|.+|.+.|+
T Consensus 327 ~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~ 405 (491)
T 4gc0_A 327 TFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRG 405 (491)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHH
T ss_pred HHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHH
Confidence 3567889999999999999998888887776654331 22222222 222233333 3455 89999999999999
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhcCccccCCcccccccccccccchhhHHHHHHHHHH-HHHHHhhcccccCC
Q 041273 75 LGLSTLSTAWGTGLIIGPAVGGFLAQPAEKYPKAFSKESMFGKFPYFLPCLCMSLFAFA-VTIASCWIPETLHK 147 (362)
Q Consensus 75 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~ 147 (362)
+++++......++..+++.+...+.+... .....++. .+.++.+.++++ .++.++++||++.+
T Consensus 406 ~~~g~~~~~~~~~~~i~~~~~p~l~~~~~-~~~~~~~~---------~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 406 KALAIAVAAQWLANYFVSWTFPMMDKNSW-LVAHFHNG---------FSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHCHHHH-HHHHHTTC---------HHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhh---------HHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 99999999999999999888776654100 00011221 122445555554 45566789998654
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.90 E-value=4.4e-09 Score=94.69 Aligned_cols=104 Identities=15% Similarity=0.056 Sum_probs=87.3
Q ss_pred cccchhhhhhcccCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcCcchhH-HHHHHhhhccccchhhHHHH
Q 041273 2 LTSVLWGMVADRCGRKPVIIIGCITVVIFNTLFGLSVSFWMAIATRFLLGALNGLLGPI-KAYACEILRDQHKTLGLSTL 80 (362)
Q Consensus 2 i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~ 80 (362)
++.++.|+++||+|||+.+..+.++.+++.++..+.++.+.+... ++.|++.+...|. .++..|.+|++ |+.+.++.
T Consensus 310 ~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 387 (438)
T 3o7q_A 310 IGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFI 387 (438)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHH
Confidence 467889999999999999999999999999888888887665554 7888888887777 88989999866 88888877
Q ss_pred HHhhhhhhhhhhhhhhhhcCccccCCcccc-ccccc
Q 041273 81 STAWGTGLIIGPAVGGFLAQPAEKYPKAFS-KESMF 115 (362)
Q Consensus 81 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~g-w~~~~ 115 (362)
. ...+|..++|.+.+.+.+ ..| ++..|
T Consensus 388 ~-~~~~g~~~~~~~~g~l~~-------~~g~~~~~~ 415 (438)
T 3o7q_A 388 V-MTIIGGGIVTPVMGFVSD-------AAGNIPTAE 415 (438)
T ss_dssp H-HTTHHHHHHHHHHHHHHH-------HHTSSGGGG
T ss_pred H-HHHHHHHHHHHHHHHHHH-------HhcchHHHH
Confidence 7 667999999999999998 566 65555
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.81 E-value=7.7e-08 Score=84.73 Aligned_cols=148 Identities=11% Similarity=0.009 Sum_probs=101.4
Q ss_pred HHHHHHHHHhHHHHHHHhHhcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 041273 199 VYCVFSLHDIAYTEIFSLWAISPWKYGGLSYSTENAGQVLAISGFSLLVFQLTLYPYVERMIGPIIITRIAGVLSIPLLT 278 (362)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 278 (362)
..++.......+...+|.+..+ +|.|+.+.+.+.+...++..+++ +..+++.||+|||+.+..+.....++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 8 LVAVGQMAQTIYIPAIADMARD------LNVREGAVQSVMGAYLLTYGVSQ-LFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT------SSSTTHHHHHHHHHHHHHHHHHH-TTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 3334444444444455544333 79999999999999999999998 9999999999999999999988888877
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccCCCC---------------------CC--Chh
Q 041273 279 SYTYIAMLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQGAGF---------------------LP--GNQ 335 (362)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---------------------~~--g~~ 335 (362)
...+.++.. ...+...+.+.+.....+....++.|..|+++.+... .. |.+
T Consensus 81 ~~~~~~~~~------~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 81 VAVTTSSLT------VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHhccHH------HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 766654321 2333344444555667788889999998855443211 00 467
Q ss_pred HHHHHHHHHHHHHHHhhcccccccc
Q 041273 336 MIFFILNLVEALGVILTFKPFLIQR 360 (362)
Q Consensus 336 ~~f~~~~~~~~i~~~~~~~~~l~~~ 360 (362)
.+|.+.+++.++..+..+. ++||+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~-~~~~~ 178 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMAR-WMPET 178 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCC-SSCCC
T ss_pred HHHHHHHHHHHHHHHHHHH-HCccc
Confidence 7888888887777664443 45554
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.65 E-value=3.9e-07 Score=84.02 Aligned_cols=151 Identities=9% Similarity=0.012 Sum_probs=106.3
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHhHhcccccccccC------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-chh
Q 041273 191 WPFISSTIVYCVFSLHDIAYTEIFSLWAISPWKYGGLS------YSTENAGQVLAISGFSLLVFQLTLYPYVERMI-GPI 263 (362)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-g~~ 263 (362)
+.++...+..++...........++.|+.+. +| +++.+.|.+.+...++..+++ +..|++.||+ |||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~~g~r 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTA-----LLLSIPEELRGAVAKDVFHSFVIGVYFFP-LLGGWIADRFFGKY 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CSSCCSSSTTTTTHHHHHHHHHHHHHHTH-HHHHHHHTTSSCSH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcch
Confidence 4555666666666666666667777777654 56 999999999999999999998 8999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccccccC---CC---C------
Q 041273 264 IITRIAGVLSIPLLTSYTYIA-MLSGFSLALLINCASVMKNVLSVSIMTGLFLLQNRAVSQKRQG---AG---F------ 330 (362)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~---~------ 330 (362)
+.+..+..+..++.++..+.. +. + ...+...+.+.+.....+...+++.|.+|+++.+ +. .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 159 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFEHSV-----Q-GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF 159 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCH-----H-HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccH-----H-HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 999988888877776665443 21 1 2223334444455666788899999999855432 11 0
Q ss_pred --------------CCChhHHHHHHHHHHHHHHHhhc
Q 041273 331 --------------LPGNQMIFFILNLVEALGVILTF 353 (362)
Q Consensus 331 --------------~~g~~~~f~~~~~~~~i~~~~~~ 353 (362)
..|.+.+|++.+++.+++.+..+
T Consensus 160 g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 160 GSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 01567888888887777665543
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=59.65 E-value=2.6 Score=19.24 Aligned_cols=14 Identities=36% Similarity=0.812 Sum_probs=11.1
Q ss_pred hhhhhhcccCCchH
Q 041273 6 LWGMVADRCGRKPV 19 (362)
Q Consensus 6 ~~G~l~Dr~Grr~~ 19 (362)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999999854
No 16
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=20.96 E-value=20 Score=17.16 Aligned_cols=10 Identities=40% Similarity=0.753 Sum_probs=7.2
Q ss_pred hcccCCchHH
Q 041273 11 ADRCGRKPVI 20 (362)
Q Consensus 11 ~Dr~Grr~~l 20 (362)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 5788888654
Done!