BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041274
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 35 ENDVEKYGSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSFGLGWEVYVIFR 94
EN EK SLE D + L V P+G N + S FG+ + + +
Sbjct: 117 ENPNEKAFSLEMDE---SYGLRVSPSGADRVNA--------TITANSFFGMRHGLETLSQ 165
Query: 95 LFVLDQKKDEFLILQ 109
LFV D +D L+++
Sbjct: 166 LFVFDDIRDHLLMVR 180
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 35 ENDVEKYGSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSFGLGWEVYVIFR 94
EN EK SLE D + L V P+G N + S FG+ + + +
Sbjct: 114 ENPNEKAFSLEMDE---SYGLRVSPSGADRVNA--------TITANSFFGMRHGLETLSQ 162
Query: 95 LFVLDQKKDEFLILQ 109
LFV D +D L+++
Sbjct: 163 LFVFDDIRDHLLMVR 177
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 35 ENDVEKYGSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSFGLGWEVYVIFR 94
EN EK SLE D + L V P+G N + S FG+ + + +
Sbjct: 114 ENPNEKAFSLEMDE---SYGLRVSPSGADRVNA--------TITANSFFGMRHGLETLSQ 162
Query: 95 LFVLDQKKDEFLILQ 109
LFV D +D L+++
Sbjct: 163 LFVFDDIRDHLLMVR 177
>pdb|3ADR|A Chain A, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
pdb|3ADR|B Chain B, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
Length = 261
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 38 VEKYGSLEFDAGGYKWKLVVYPNGNKNENVKDHISV 73
+E G+ EFD GGY+ +L+ P + + H SV
Sbjct: 125 IEVEGNEEFDLGGYRXRLIYTPG-----HARHHXSV 155
>pdb|3N9Y|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Z|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 487
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 37 DVEKYGSLEFDAGGYKWKLVVYPNGNKN---ENVKDHISVYLAM-VDTSSFGLGWEVYVI 92
++ + GS+ D G ++L+ G+ E++K +++ LA VDT+S L W +Y +
Sbjct: 247 ELRQKGSVHHDYRGILYRLL----GDSKMSFEDIKANVTEMLAGGVDTTSMTLQWHLYEM 302
Query: 93 FR-LFVLDQKKDEFL 106
R L V D + E L
Sbjct: 303 ARNLKVQDMLRAEVL 317
>pdb|2VIU|A Chain A, Influenza Virus Hemagglutinin
Length = 328
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 11/52 (21%)
Query: 23 FILKIEAFSSLVENDVEKY----------GSLEFDAGGYKWKLVVYPNGNKN 64
F+ + +AFS+ DV Y G+LEF G+ W V+ NG N
Sbjct: 87 FVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVI-QNGGSN 137
>pdb|3NA0|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 471
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 37 DVEKYGSLEFDAGGYKWKLVVYPNGNKN---ENVKDHISVYLAM-VDTSSFGLGWEVYVI 92
++ + GS+ D G ++L+ G+ E++K +++ LA VDT+S L W +Y +
Sbjct: 244 ELRQKGSVHHDYRGILYRLL----GDSKMSFEDIKANVTEMLAGGVDTTSMTLQWHLYEM 299
Query: 93 FR-LFVLDQKKDEFL 106
R L V D + E L
Sbjct: 300 ARNLKVQDMLRAEVL 314
>pdb|2VIS|C Chain C, Influenza Virus Hemagglutinin, (Escape) Mutant With Thr
131 Replaced By Ile, Complexed With A Neutralizing
Antibody
Length = 282
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 11/52 (21%)
Query: 23 FILKIEAFSSLVENDVEKY----------GSLEFDAGGYKWKLVVYPNGNKN 64
F+ + +AFS+ DV Y G+LEF G+ W V+ NG N
Sbjct: 60 FVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTWTGVIQ-NGGSN 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,375,214
Number of Sequences: 62578
Number of extensions: 129942
Number of successful extensions: 226
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 12
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)