BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041274
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana
GN=UBP13 PE=1 SV=1
Length = 1115
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 19 PPA-HFILKIEAFSSLVENDVEKYGSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAM 77
PP+ F I F+ L + K+ S F GGYKW+++++P GN NV DH+S+YL +
Sbjct: 51 PPSLKFTWTIPMFTRL---NTRKHYSDVFVVGGYKWRILIFPKGN---NV-DHLSMYLDV 103
Query: 78 VDTSSFGLGWEVYVIFRLFVLDQKKDEFLI 107
D ++ GW Y F L V++Q + + I
Sbjct: 104 ADAANLPYGWSRYSQFSLAVVNQVNNRYSI 133
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana
GN=UBP12 PE=1 SV=2
Length = 1116
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 19 PPAHFILKIEAFSSLVENDVEKYGSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMV 78
P F I FS + K+ S F GGYKW+++++P GN NV DH+S+YL +
Sbjct: 53 PTLKFTWTIPNFSR---QNTRKHYSDVFVVGGYKWRILIFPKGN---NV-DHLSMYLDVS 105
Query: 79 DTSSFGLGWEVYVIFRLFVLDQ 100
D +S GW Y F L V++Q
Sbjct: 106 DAASLPYGWSRYAQFSLAVVNQ 127
>sp|A1L4W5|BPM6_ARATH BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis
thaliana GN=BPM6 PE=1 SV=1
Length = 415
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 3 NDFVDQVEI---SRSISHVPPAHFILKIEAFSSLVENDVEKY-GSLEFDAGGYKWKLVVY 58
N DQ+E SRS++ I+ +S V K+ S F GGY+W + VY
Sbjct: 15 NTIPDQIESPTSSRSVTQTTNGSHQFVIQGYSLAKGIGVGKHIASDNFSVGGYQWTIFVY 74
Query: 59 PNGNKNENVKDHISVYLAMVDTSSFGLGWEVYVIFRLFVLDQ 100
P+G E+ ++SV++ + + EV +F L ++DQ
Sbjct: 75 PDGKNPEDNSSYVSVFIVLASECT-----EVRALFELSLVDQ 111
>sp|Q1EBV6|BPM5_ARATH BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis
thaliana GN=BPM5 PE=1 SV=1
Length = 410
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 46 FDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSFGLGWEVYVIFRLFVLDQ 100
F GGY+W + YP+G E+ ++SV++A+ G EV +F L ++DQ
Sbjct: 55 FSVGGYQWGIFFYPDGKNPEDNSSYVSVFIALASE-----GTEVRALFELALVDQ 104
>sp|Q9M8J9|BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis
thaliana GN=BPM2 PE=1 SV=1
Length = 406
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 25 LKIEAFSSLVENDVEKY-GSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSF 83
KI +S + + KY S F GGY W + YP+G E+ ++S+++A+
Sbjct: 37 FKISGYSLVKGMGIGKYVASDTFMVGGYSWAIYFYPDGKSPEDNSVYVSLFIALASE--- 93
Query: 84 GLGWEVYVIFRLFVLDQKKDE 104
G +V +F L ++DQ +E
Sbjct: 94 --GADVRALFELTLVDQSGNE 112
>sp|Q9SRV1|BPM4_ARATH BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis
thaliana GN=BPM4 PE=1 SV=1
Length = 465
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 46 FDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSFGLGWEVYVIFRLFVLDQ 100
F GGY+W + YP+G E+ ++SV++A+ G +V +F L +LDQ
Sbjct: 73 FTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASD-----GTDVRALFELSLLDQ 122
>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana
GN=At5g43560 PE=1 SV=1
Length = 1055
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 27 IEAFSSLVENDVEKYGSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSFGLG 86
IE FS + N E G + F+ GGYKW +++YP G +V +H+S++L + G
Sbjct: 75 IEKFSDI--NKRELRGDV-FEVGGYKWYILIYPQGC---DVCNHLSLFLCVAHHEKLLPG 128
Query: 87 WEVYVIFRLFVLDQ 100
W + F + V ++
Sbjct: 129 WSHFAQFTIAVSNK 142
>sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis
thaliana GN=BPM3 PE=1 SV=1
Length = 408
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 46 FDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSFGLGWEVYVIFRLFVLDQ 100
F GGY W + YP+G E+ +IS+++A+ S+ ++ +F L ++DQ
Sbjct: 51 FSVGGYDWAIYFYPDGKNPEDQSSYISLFIALASDSN-----DIRALFELTLMDQ 100
>sp|Q8L765|BPM1_ARATH BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis
thaliana GN=BPM1 PE=1 SV=1
Length = 407
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 38 VEKY-GSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSFGLGWEVYVIFRLF 96
V KY S F GGY W + YP+G E+ ++S+++A+ G +V +F L
Sbjct: 51 VGKYVASDTFMVGGYSWAIYFYPDGKSPEDNSSYVSLFIALASE-----GADVRALFELT 105
Query: 97 VLDQ 100
++DQ
Sbjct: 106 LVDQ 109
>sp|Q86AY4|Y2340_DICDI TNF receptor-associated factor family protein DDB_G0272340
OS=Dictyostelium discoideum GN=DDB_G0272340 PE=3 SV=2
Length = 449
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 43 SLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVDTSS 82
S EF G K+K+ YPNG ++ KD +S+YL D +
Sbjct: 336 SPEFMVGNLKFKIQFYPNGGLSDESKDFLSIYLYKFDDQT 375
>sp|P50101|UBP15_YEAST Ubiquitin carboxyl-terminal hydrolase 15 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP15 PE=1
SV=1
Length = 1230
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 40 KYGSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYL 75
KY S F G ++W ++++P GN N+ V +VYL
Sbjct: 56 KYNSPRFRIGDFEWDILLFPQGNHNKGV----AVYL 87
>sp|Q54FB9|Y0971_DICDI TNF receptor-associated factor family protein DDB_G0290971
OS=Dictyostelium discoideum GN=DDB_G0290971 PE=3 SV=1
Length = 445
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 39 EKYGSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMV 78
E ++ D G K+KL +YPNG N K +IS YL V
Sbjct: 332 EGISTVPLDVGNNKFKLTLYPNGYDESN-KGNISAYLYRV 370
>sp|P34371|BAT42_CAEEL BTB and MATH domain-containing protein 42 OS=Caenorhabditis elegans
GN=bath-42 PE=1 SV=1
Length = 410
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 26 KIEAFSSLVE------NDVEKYGSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVD 79
KIE F L++ N + + S+ DA W+L VYPNG ++E+V +++S +L V
Sbjct: 51 KIEQFEKLMKLIKNGSNLISRMFSVP-DAPTVCWELHVYPNGKRDEDV-NNVSFFLRQV- 107
Query: 80 TSSFGLGWE-VYVIFRLFVLD 99
G E + F+++ LD
Sbjct: 108 --GLARGEEPIMTEFQIYALD 126
>sp|Q7SFY0|SSU72_NEUCR RNA polymerase II subunit A C-terminal domain phosphatase ssu-72
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=ssu-72 PE=3 SV=1
Length = 266
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 47 DAGGYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSFGLG 86
D+GG+K K N+N +++ H+ + LA SFG G
Sbjct: 30 DSGGFKLKFCTVCASNQNRSMEGHLRLSLANYPVISFGTG 69
>sp|Q717B2|TDPZ2_MOUSE TD and POZ domain-containing protein 2 OS=Mus musculus GN=Tdpoz2
PE=2 SV=2
Length = 364
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 53 WKLVVYPNGNKNENVKDHISVYLAMVD 79
W L V+PNG E+ KD++SVYL +V+
Sbjct: 55 WCLRVHPNGFDEES-KDYLSVYLVLVN 80
>sp|Q9NF14|BAT40_CAEEL BTB and MATH domain-containing protein 40 OS=Caenorhabditis elegans
GN=bath-40 PE=1 SV=1
Length = 402
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 53 WKLVVYPNGNKNENVKDHISVYLAMVDTS 81
W+L +YP G + EN +++S++L M TS
Sbjct: 81 WQLCLYPGGKREENA-NNVSLFLKMSATS 108
>sp|Q6CKK7|ACOX_KLULA Acyl-coenzyme A oxidase OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=POX1 PE=3 SV=1
Length = 736
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 79 DTSSFGLGWEVYVIFRLFVLDQKKDEFLILQ 109
D + G W++Y +F L+ +DQ EFL+L+
Sbjct: 600 DAYTKGYLWKLYELFSLYFIDQHLGEFLLLK 630
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,065,405
Number of Sequences: 539616
Number of extensions: 1626923
Number of successful extensions: 3594
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3579
Number of HSP's gapped (non-prelim): 20
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)