Query 041274
Match_columns 109
No_of_seqs 120 out of 1017
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 08:53:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ivv_A Speckle-type POZ protei 99.9 1.1E-24 3.9E-29 144.5 10.6 89 14-107 4-95 (145)
2 1lb6_A TNF receptor-associated 99.9 3.5E-24 1.2E-28 144.3 8.1 86 18-103 2-94 (160)
3 4ghu_A TNF receptor-associated 99.9 3.7E-24 1.3E-28 149.3 6.9 87 18-105 37-130 (198)
4 4gjh_A TNF receptor-associated 99.9 7.1E-24 2.4E-28 145.3 7.2 88 17-105 20-114 (178)
5 1ca9_A TRAF2, protein (TNF rec 99.9 1.2E-23 3.9E-28 145.7 6.4 87 18-105 40-133 (192)
6 2gkw_A TNF receptor-associated 99.9 9.2E-24 3.2E-28 146.4 5.7 86 19-105 38-130 (192)
7 2foj_A Ubiquitin carboxyl-term 99.9 8.9E-23 3.1E-27 136.5 9.9 82 18-104 16-97 (155)
8 1d00_A Tumor necrosis factor r 99.9 2.9E-23 1E-27 140.5 6.1 87 18-105 16-109 (168)
9 1flk_A TNF receptor associated 99.9 4.9E-23 1.7E-27 146.2 5.4 87 18-105 73-166 (228)
10 3hqi_A Speckle-type POZ protei 99.8 4.7E-21 1.6E-25 140.1 9.3 85 18-107 4-91 (312)
11 2f1z_A Ubiquitin carboxyl-term 99.8 8.3E-21 2.8E-25 147.5 8.4 83 18-105 28-110 (522)
12 4gwm_A Meprin A subunit beta; 99.2 9.3E-11 3.2E-15 92.8 9.2 82 15-102 400-484 (592)
13 3v0r_A Major allergen ALT A 1; 65.5 1.1 3.9E-05 28.8 -0.3 31 17-48 8-38 (133)
14 2d9r_A Conserved hypothetical 61.0 6.5 0.00022 24.0 2.6 16 47-62 59-74 (104)
15 2k8e_A UPF0339 protein YEGP; p 49.3 8.5 0.00029 24.5 1.8 40 21-62 2-41 (130)
16 1jya_A YOPE regulator; specifi 37.6 39 0.0013 21.5 3.5 33 38-80 23-55 (130)
17 2og0_A Excisionase; protein-DN 34.2 41 0.0014 17.7 2.8 18 38-56 27-44 (52)
18 1lcs_A Feline leukemia virus r 22.2 80 0.0027 21.7 3.2 29 48-79 177-205 (211)
19 1aol_A GP70, SU; coat protein, 21.3 82 0.0028 21.9 3.1 29 48-79 194-222 (228)
No 1
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.92 E-value=1.1e-24 Score=144.45 Aligned_cols=89 Identities=30% Similarity=0.391 Sum_probs=76.6
Q ss_pred EeecCCCcEEEEEEcCcccccccCCcEEEcccEEeCCe---EEEEEEEeCCCcCCCCCCcEEEEEEeccCCCCCCCCEEE
Q 041274 14 SISHVPPAHFILKIEAFSSLVENDVEKYGSLEFDAGGY---KWKLVVYPNGNKNENVKDHISVYLAMVDTSSFGLGWEVY 90 (109)
Q Consensus 14 ~~~~~~~~~~~w~I~~fs~~~~~~~~~~~S~~F~vGG~---~W~l~~yP~G~~~~~~~~~iSlyL~l~~~~~~~~~~~~~ 90 (109)
.+.+...++|+|+|+|||.+++..++.+.|++|.+||| +|+|++||+|+.. +..+||||||++.+. ++|+++
T Consensus 4 ~m~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~-~~~~~lSlyL~l~~~----~~w~v~ 78 (145)
T 3ivv_A 4 GSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDE-ESKDYLSLYLLLVSC----PKSEVR 78 (145)
T ss_dssp -CCCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSG-GGTTEEEEEEEEEEC----SSSEEE
T ss_pred CCCcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCC-CCCCeEEEEEEEcCC----CCCcEE
Confidence 34567889999999999998754568999999999996 9999999999874 457899999999875 259999
Q ss_pred EEEEEEEEeCCCCceeE
Q 041274 91 VIFRLFVLDQKKDEFLI 107 (109)
Q Consensus 91 a~f~~~l~nq~~~~~~~ 107 (109)
|+|+|.|+||.++++..
T Consensus 79 a~f~l~llnq~~~~~~~ 95 (145)
T 3ivv_A 79 AKFKFSILNAKGEETKA 95 (145)
T ss_dssp EEEEEEEECTTSCEEEE
T ss_pred EEEEEEEEecCCCceee
Confidence 99999999999887653
No 2
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.90 E-value=3.5e-24 Score=144.25 Aligned_cols=86 Identities=22% Similarity=0.287 Sum_probs=72.7
Q ss_pred CCCcEEEEEEcCcccccc-c-CCc--EEEcccEEeC--CeEEEEEEEeCCCcCCCCCCcEEEEEEeccCCCC-CCCCEEE
Q 041274 18 VPPAHFILKIEAFSSLVE-N-DVE--KYGSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSF-GLGWEVY 90 (109)
Q Consensus 18 ~~~~~~~w~I~~fs~~~~-~-~~~--~~~S~~F~vG--G~~W~l~~yP~G~~~~~~~~~iSlyL~l~~~~~~-~~~~~~~ 90 (109)
...++|+|+|+|||.+++ + .++ .+.|++|.+| ||+|+|++||+|+..+...+||||||++.+.+.+ +.+|+++
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~ 81 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence 357899999999999975 2 355 8999999999 9999999999998743237899999999876543 4569999
Q ss_pred EEEEEEEEeCCCC
Q 041274 91 VIFRLFVLDQKKD 103 (109)
Q Consensus 91 a~f~~~l~nq~~~ 103 (109)
|+|+|.|+||.++
T Consensus 82 a~~~l~lldq~~~ 94 (160)
T 1lb6_A 82 GTIRLTILDQSEA 94 (160)
T ss_dssp SEEEEEECCCSCT
T ss_pred eeEEEEEEcCCCc
Confidence 9999999999865
No 3
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.90 E-value=3.7e-24 Score=149.34 Aligned_cols=87 Identities=23% Similarity=0.290 Sum_probs=74.7
Q ss_pred CCCcEEEEEEcCcccccc---c-CCcEEEcccEEeC--CeEEEEEEEeCCCcCCCCCCcEEEEEEeccCCCC-CCCCEEE
Q 041274 18 VPPAHFILKIEAFSSLVE---N-DVEKYGSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSF-GLGWEVY 90 (109)
Q Consensus 18 ~~~~~~~w~I~~fs~~~~---~-~~~~~~S~~F~vG--G~~W~l~~yP~G~~~~~~~~~iSlyL~l~~~~~~-~~~~~~~ 90 (109)
...|+|+|+|+|||.+++ . .++.+.|++|.+| ||+|+|++||+|+.. +..+||||||.+.+.+.+ ..+|+++
T Consensus 37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~-~~~~~lSlyL~l~~g~~D~~l~wp~~ 115 (198)
T 4ghu_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGM-GKGTHLSLFFVIMRGEYDALLPWPFK 115 (198)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCC-CCCCeEEEEEEecCCccCCCCCceEE
Confidence 567999999999999886 2 3579999999999 999999999999874 457899999999876543 3579999
Q ss_pred EEEEEEEEeCCCCce
Q 041274 91 VIFRLFVLDQKKDEF 105 (109)
Q Consensus 91 a~f~~~l~nq~~~~~ 105 (109)
|+|+|.|+||.+++.
T Consensus 116 a~~~l~Lldq~~~~~ 130 (198)
T 4ghu_A 116 QKVTLMLMDQGSSRR 130 (198)
T ss_dssp CCEEEEECCCSTTCC
T ss_pred EEEEEEEEcCCCCcc
Confidence 999999999987644
No 4
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.90 E-value=7.1e-24 Score=145.34 Aligned_cols=88 Identities=20% Similarity=0.291 Sum_probs=74.3
Q ss_pred cCCCcEEEEEEcCccccccc--C--CcEEEcccEEeC--CeEEEEEEEeCCCcCCCCCCcEEEEEEeccCCCC-CCCCEE
Q 041274 17 HVPPAHFILKIEAFSSLVEN--D--VEKYGSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSF-GLGWEV 89 (109)
Q Consensus 17 ~~~~~~~~w~I~~fs~~~~~--~--~~~~~S~~F~vG--G~~W~l~~yP~G~~~~~~~~~iSlyL~l~~~~~~-~~~~~~ 89 (109)
.+..++|+|+|+|||.+++. . +..+.|++|.+| ||+|+|++||+|+.. +..+||||||++.+.... ..+|++
T Consensus 20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~-~~~~~lSlyL~l~~~~~d~~l~W~v 98 (178)
T 4gjh_A 20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGS-GKGTHLSLYFVVMRGEFDSLLQWPF 98 (178)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGG-GTTTEEEEEEEEBCCTTGGGSCSSC
T ss_pred cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCC-CCCCEEEEEEEEecCCCCcccCCce
Confidence 46789999999999998862 2 348999999999 999999999999874 456899999999876532 356999
Q ss_pred EEEEEEEEEeCCCCce
Q 041274 90 YVIFRLFVLDQKKDEF 105 (109)
Q Consensus 90 ~a~f~~~l~nq~~~~~ 105 (109)
+|+|+|.|+||.+++.
T Consensus 99 ~a~~~l~Lldq~~~~~ 114 (178)
T 4gjh_A 99 RQRVTLMLLDQSGKKN 114 (178)
T ss_dssp CCEEEEEECCTTSSCC
T ss_pred EEEEEEEEEcCCCCcc
Confidence 9999999999997653
No 5
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.89 E-value=1.2e-23 Score=145.65 Aligned_cols=87 Identities=26% Similarity=0.374 Sum_probs=74.9
Q ss_pred CCCcEEEEEEcCcccccc-c-CCc--EEEcccEEe--CCeEEEEEEEeCCCcCCCCCCcEEEEEEeccCCCCC-CCCEEE
Q 041274 18 VPPAHFILKIEAFSSLVE-N-DVE--KYGSLEFDA--GGYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSFG-LGWEVY 90 (109)
Q Consensus 18 ~~~~~~~w~I~~fs~~~~-~-~~~--~~~S~~F~v--GG~~W~l~~yP~G~~~~~~~~~iSlyL~l~~~~~~~-~~~~~~ 90 (109)
...++|+|+|+|||.+++ . .++ .++||+|.+ |||+|+|++||+|+.. +..+||||||++.+...++ .+|+++
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~-~~~~~lSlyL~l~~~~~~~~~~W~~~ 118 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGT-GRGTHLSLFFVVMKGPNDALLRWPFN 118 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCC-CCCCEEEEEEEEccCCCCCcCCCceE
Confidence 578999999999999975 2 344 699999999 9999999999999874 3578999999998876544 679999
Q ss_pred EEEEEEEEeCCCCce
Q 041274 91 VIFRLFVLDQKKDEF 105 (109)
Q Consensus 91 a~f~~~l~nq~~~~~ 105 (109)
|+|+|.|+||.++++
T Consensus 119 a~~~l~lldq~~~~~ 133 (192)
T 1ca9_A 119 QKVTLMLLDQNNREH 133 (192)
T ss_dssp CCEEEEECCTTSSCC
T ss_pred EEEEEEEECCCCCce
Confidence 999999999998854
No 6
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.89 E-value=9.2e-24 Score=146.44 Aligned_cols=86 Identities=23% Similarity=0.293 Sum_probs=73.7
Q ss_pred CCcEEEEEEcCcccccc-c-CCc--EEEcccEEeC--CeEEEEEEEeCCCcCCCCCCcEEEEEEeccCCCC-CCCCEEEE
Q 041274 19 PPAHFILKIEAFSSLVE-N-DVE--KYGSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSF-GLGWEVYV 91 (109)
Q Consensus 19 ~~~~~~w~I~~fs~~~~-~-~~~--~~~S~~F~vG--G~~W~l~~yP~G~~~~~~~~~iSlyL~l~~~~~~-~~~~~~~a 91 (109)
..++|+|+|+|||.++. . .++ .+.|++|.+| ||+|+|++||+|+.. +..+|||+||++.+.+.+ ..+|+++|
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~-~~~~~lSlyL~l~~~~~d~~l~wp~~a 116 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQ 116 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCC-CCCCEEEEEEEEecCCCCccCCCcEEE
Confidence 68999999999999974 2 345 6999999999 999999999999874 457899999999876544 35799999
Q ss_pred EEEEEEEeCCCCce
Q 041274 92 IFRLFVLDQKKDEF 105 (109)
Q Consensus 92 ~f~~~l~nq~~~~~ 105 (109)
+|+|.|+||.+++.
T Consensus 117 ~~~l~lldq~~~~~ 130 (192)
T 2gkw_A 117 KVTLMLMDQGSSRR 130 (192)
T ss_dssp CEEEEECCCSTTCC
T ss_pred EEEEEEECCCCCcc
Confidence 99999999998754
No 7
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.89 E-value=8.9e-23 Score=136.49 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=68.0
Q ss_pred CCCcEEEEEEcCcccccccCCcEEEcccEEeCCeEEEEEEEeCCCcCCCCCCcEEEEEEeccCCCCCCCCEEEEEEEEEE
Q 041274 18 VPPAHFILKIEAFSSLVENDVEKYGSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSFGLGWEVYVIFRLFV 97 (109)
Q Consensus 18 ~~~~~~~w~I~~fs~~~~~~~~~~~S~~F~vGG~~W~l~~yP~G~~~~~~~~~iSlyL~l~~~~~~~~~~~~~a~f~~~l 97 (109)
...++|+|+|+|||.++ +.++|++|.+||+.|||++||+|+..++..+||||||++... ..+.+|.++|+|+|.|
T Consensus 16 ~~~~~~~w~I~nfS~~~----~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l 90 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKI 90 (155)
T ss_dssp CSEEEEEEEESSGGGCC----SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEE
T ss_pred CCCcEEEEEECChhhcC----CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEE
Confidence 45799999999999995 689999999999999999999997632246899999999644 3456799999999999
Q ss_pred EeCCCCc
Q 041274 98 LDQKKDE 104 (109)
Q Consensus 98 ~nq~~~~ 104 (109)
+||.+++
T Consensus 91 ~~~~~~~ 97 (155)
T 2foj_A 91 INYRDDE 97 (155)
T ss_dssp CCSSCGG
T ss_pred EcCCCCc
Confidence 9998875
No 8
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.88 E-value=2.9e-23 Score=140.47 Aligned_cols=87 Identities=26% Similarity=0.374 Sum_probs=73.8
Q ss_pred CCCcEEEEEEcCccccccc--CCc--EEEcccEE--eCCeEEEEEEEeCCCcCCCCCCcEEEEEEeccCCCCC-CCCEEE
Q 041274 18 VPPAHFILKIEAFSSLVEN--DVE--KYGSLEFD--AGGYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSFG-LGWEVY 90 (109)
Q Consensus 18 ~~~~~~~w~I~~fs~~~~~--~~~--~~~S~~F~--vGG~~W~l~~yP~G~~~~~~~~~iSlyL~l~~~~~~~-~~~~~~ 90 (109)
...++|+|+|+|||.+++. .++ .+.||+|. +|||+|+|++||+|+.. +..+||||||++.+....+ .+|+++
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~-~~~~~lSlyL~l~~~~~~~~~~w~~~ 94 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGT-GRGTHLSLFFVVMKGPNDALLRWPFN 94 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGG-GTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCC-CCCcEEEEEEEEecCCCCccCCCceE
Confidence 4689999999999999862 344 49999995 89999999999999874 3468999999998766543 679999
Q ss_pred EEEEEEEEeCCCCce
Q 041274 91 VIFRLFVLDQKKDEF 105 (109)
Q Consensus 91 a~f~~~l~nq~~~~~ 105 (109)
|+|+|.|+||.++++
T Consensus 95 ~~~~l~ll~q~~~~~ 109 (168)
T 1d00_A 95 QKVTLMLLDQNNREH 109 (168)
T ss_dssp CCEEEEECCTTSSCC
T ss_pred EEEEEEEECCCCCcc
Confidence 999999999998764
No 9
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.87 E-value=4.9e-23 Score=146.21 Aligned_cols=87 Identities=23% Similarity=0.271 Sum_probs=74.4
Q ss_pred CCCcEEEEEEcCcccccc-c-CC--cEEEcccEEeC--CeEEEEEEEeCCCcCCCCCCcEEEEEEeccCCCC-CCCCEEE
Q 041274 18 VPPAHFILKIEAFSSLVE-N-DV--EKYGSLEFDAG--GYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSF-GLGWEVY 90 (109)
Q Consensus 18 ~~~~~~~w~I~~fs~~~~-~-~~--~~~~S~~F~vG--G~~W~l~~yP~G~~~~~~~~~iSlyL~l~~~~~~-~~~~~~~ 90 (109)
...++|+|+|+|||.+++ + .+ ..+.|++|.+| ||+|+|++||||+.. +..+|||+||++.+...+ ..+|+++
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~-~~~~~lSlyL~l~~~~~d~~l~Wp~~ 151 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGM-GKGTHLSLFFVIMRGEYDALLPWPFK 151 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGG-GTTTEEEEEECCBCCTTTTSSCSSCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCC-CCCCEEEEEEEEecCCccccCCCcEE
Confidence 468999999999999875 2 23 48999999999 999999999999874 457899999999876544 3579999
Q ss_pred EEEEEEEEeCCCCce
Q 041274 91 VIFRLFVLDQKKDEF 105 (109)
Q Consensus 91 a~f~~~l~nq~~~~~ 105 (109)
|+|+|.|+||.+++.
T Consensus 152 a~~~l~lldq~~~~~ 166 (228)
T 1flk_A 152 QKVTLMLMDQGSSRR 166 (228)
T ss_dssp CCEEEEECCCSSSCC
T ss_pred EEEEEEEEcCCCCcc
Confidence 999999999998764
No 10
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.84 E-value=4.7e-21 Score=140.08 Aligned_cols=85 Identities=32% Similarity=0.422 Sum_probs=69.6
Q ss_pred CCCcEEEEEEcCcccccccCCcEEEcccEEeCCe---EEEEEEEeCCCcCCCCCCcEEEEEEeccCCCCCCCCEEEEEEE
Q 041274 18 VPPAHFILKIEAFSSLVENDVEKYGSLEFDAGGY---KWKLVVYPNGNKNENVKDHISVYLAMVDTSSFGLGWEVYVIFR 94 (109)
Q Consensus 18 ~~~~~~~w~I~~fs~~~~~~~~~~~S~~F~vGG~---~W~l~~yP~G~~~~~~~~~iSlyL~l~~~~~~~~~~~~~a~f~ 94 (109)
...++|+|+|+|||.++...++.+.|++|.+||| +|+|++||+|+.. +..+|+|+||.+.+.. +|+++|+|+
T Consensus 4 ~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~-~~~~~lslyL~~~~~~----~~~v~a~~~ 78 (312)
T 3hqi_A 4 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDE-ESKDYLSLYLLLVSCP----KSEVRAKFK 78 (312)
T ss_dssp EEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECC----C-CEEEEEE
T ss_pred eEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCc-cCCCcEEEEEEEcCCC----CCcEEEEEE
Confidence 3468999999999999754578999999999996 9999999999873 4578999999998753 488999999
Q ss_pred EEEEeCCCCceeE
Q 041274 95 LFVLDQKKDEFLI 107 (109)
Q Consensus 95 ~~l~nq~~~~~~~ 107 (109)
|.|+||++++...
T Consensus 79 ~~l~~~~~~~~~~ 91 (312)
T 3hqi_A 79 FSILNAKGEETKA 91 (312)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEEEeCCCCcccc
Confidence 9999999877643
No 11
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.83 E-value=8.3e-21 Score=147.48 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=67.6
Q ss_pred CCCcEEEEEEcCcccccccCCcEEEcccEEeCCeEEEEEEEeCCCcCCCCCCcEEEEEEeccCCCCCCCCEEEEEEEEEE
Q 041274 18 VPPAHFILKIEAFSSLVENDVEKYGSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSFGLGWEVYVIFRLFV 97 (109)
Q Consensus 18 ~~~~~~~w~I~~fs~~~~~~~~~~~S~~F~vGG~~W~l~~yP~G~~~~~~~~~iSlyL~l~~~~~~~~~~~~~a~f~~~l 97 (109)
...++|+|+|+|||.++ +.+.|++|.+||++|||++||+|+..++..+||||||++.+. ..+.+|.++|+|+|.|
T Consensus 28 ~~~~~~~w~I~nfS~~~----~~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l 102 (522)
T 2f1z_A 28 RSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKI 102 (522)
T ss_dssp CSEEEEEEEESSCTTCC----SCEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEE
T ss_pred cCCcEEEEEECChhhcC----CceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEE
Confidence 55899999999999997 389999999999999999999997633357899999999876 4567899999999999
Q ss_pred EeCCCCce
Q 041274 98 LDQKKDEF 105 (109)
Q Consensus 98 ~nq~~~~~ 105 (109)
+||.+++.
T Consensus 103 ~n~~~~~~ 110 (522)
T 2f1z_A 103 INYRDDEK 110 (522)
T ss_dssp CCTTCGGG
T ss_pred EcCCCCcc
Confidence 99987654
No 12
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.18 E-value=9.3e-11 Score=92.78 Aligned_cols=82 Identities=18% Similarity=0.345 Sum_probs=70.3
Q ss_pred eecCCCcEEEEEEcCcccccccCCcEEEcccEEe-CCeEEEEEEEeCCCcCCCCCCcEEEEEEeccCCCC-CCCCEE-EE
Q 041274 15 ISHVPPAHFILKIEAFSSLVENDVEKYGSLEFDA-GGYKWKLVVYPNGNKNENVKDHISVYLAMVDTSSF-GLGWEV-YV 91 (109)
Q Consensus 15 ~~~~~~~~~~w~I~~fs~~~~~~~~~~~S~~F~v-GG~~W~l~~yP~G~~~~~~~~~iSlyL~l~~~~~~-~~~~~~-~a 91 (109)
+.+..|..+.|+|.||+++....+..++||+|.. .||+++|.+||++ ..|+|||++|..++.+ ..+|++ .-
T Consensus 400 ~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~------~~~~~~~~~l~sG~~D~~L~WP~~~~ 473 (592)
T 4gwm_A 400 LSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH------VTNAGIYFHLISGANDDQLQWPCPWQ 473 (592)
T ss_dssp EESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS------SSEEEEEEEEECCTTGGGSCSSCCSE
T ss_pred EeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC------CceEEEEEEEecCCCCCCccCCCCCC
Confidence 4678999999999999999865567899999964 6999999999975 4689999999987755 477999 57
Q ss_pred EEEEEEEeCCC
Q 041274 92 IFRLFVLDQKK 102 (109)
Q Consensus 92 ~f~~~l~nq~~ 102 (109)
+++|.|+||+.
T Consensus 474 q~t~~llDQ~p 484 (592)
T 4gwm_A 474 QATMTLLDQNP 484 (592)
T ss_dssp EEEEEECCCCS
T ss_pred EEEEEEeCCCC
Confidence 89999999974
No 13
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=65.53 E-value=1.1 Score=28.76 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=24.2
Q ss_pred cCCCcEEEEEEcCcccccccCCcEEEcccEEe
Q 041274 17 HVPPAHFILKIEAFSSLVENDVEKYGSLEFDA 48 (109)
Q Consensus 17 ~~~~~~~~w~I~~fs~~~~~~~~~~~S~~F~v 48 (109)
.+..|-+.|+|.+|+..|. .+..+.|-.|.+
T Consensus 8 v~~~gd~vwkIs~F~~RKp-eGty~nsvsFnI 38 (133)
T 3v0r_A 8 VTTEGDYVWKISEFYGRKP-EGTYYNSLGFNI 38 (133)
T ss_dssp SCCCCTTEEEEEEEEEEET-TSSSCSEEEEEE
T ss_pred cccCCceEEEeeeeeeEcC-CCCceeeEEEEE
Confidence 4567889999999998873 456677777865
No 14
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=61.00 E-value=6.5 Score=24.04 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=14.3
Q ss_pred EeCCeEEEEEEEeCCC
Q 041274 47 DAGGYKWKLVVYPNGN 62 (109)
Q Consensus 47 ~vGG~~W~l~~yP~G~ 62 (109)
+++|+.|+-.+.|.|+
T Consensus 59 tI~g~~~~tsL~p~g~ 74 (104)
T 2d9r_A 59 TFDGYPYTGYIVRMGL 74 (104)
T ss_dssp EETTEEEEEEEEESST
T ss_pred EECCEEEEEEEEECCC
Confidence 6799999999999983
No 15
>2k8e_A UPF0339 protein YEGP; protein structure initiative (PSI), northeast structur genomics consortium (NESG), ontario centre for structural P (OCSP); NMR {Escherichia coli} SCOP: d.348.1.1 d.348.1.1
Probab=49.32 E-value=8.5 Score=24.49 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=13.7
Q ss_pred cEEEEEEcCcccccccCCcEEEcccEEeCCeEEEEEEEeCCC
Q 041274 21 AHFILKIEAFSSLVENDVEKYGSLEFDAGGYKWKLVVYPNGN 62 (109)
Q Consensus 21 ~~~~w~I~~fs~~~~~~~~~~~S~~F~vGG~~W~l~~yP~G~ 62 (109)
++.++.|.||++-..|.+....-.. .-|.+.|||+. +||.
T Consensus 2 ~~~~~~~~~~~~~~~Mag~FEi~~~-~~G~~rfrLka-~NGe 41 (130)
T 2k8e_A 2 GHMLFSIHNFNQGVIMAGWFELSKS-SDNQFRFVLKA-GNGE 41 (130)
T ss_dssp ------------CCCCCCEEEEEEC-TTCCEEEEEEC-TTSC
T ss_pred CcEEEEEeccCccceeeeeEEEEEc-CCCCEEEEEEe-CCCC
Confidence 5778899999986655432111000 23678898884 4553
No 16
>1jya_A YOPE regulator; specific chaperone, type III secretion; 1.74A {Yersinia pseudotuberculosis} SCOP: d.198.1.1 PDB: 1k6z_A 1n5b_A 1l2w_A
Probab=37.64 E-value=39 Score=21.50 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=26.1
Q ss_pred CcEEEcccEEeCCeEEEEEEEeCCCcCCCCCCcEEEEEEeccC
Q 041274 38 VEKYGSLEFDAGGYKWKLVVYPNGNKNENVKDHISVYLAMVDT 80 (109)
Q Consensus 38 ~~~~~S~~F~vGG~~W~l~~yP~G~~~~~~~~~iSlyL~l~~~ 80 (109)
.+.+. .|.|||+.-.|..||. +|+.+|-.+...
T Consensus 23 ~e~I~--SL~Vd~~t~hite~p~--------~~LlmFs~L~~~ 55 (130)
T 1jya_A 23 IEPVI--GVKVGEFACHITEHPV--------GQILMFTLPSLD 55 (130)
T ss_dssp CCSEE--EEEETTEEEEEEECST--------TEEEEEECCCCC
T ss_pred cCceE--EEEECCeEEEEEecCC--------CeEEEEeccCcc
Confidence 45566 5899999999999995 489999777543
No 17
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=34.17 E-value=41 Score=17.71 Aligned_cols=18 Identities=6% Similarity=0.036 Sum_probs=14.7
Q ss_pred CcEEEcccEEeCCeEEEEE
Q 041274 38 VEKYGSLEFDAGGYKWKLV 56 (109)
Q Consensus 38 ~~~~~S~~F~vGG~~W~l~ 56 (109)
...++-|+|.+|+ .|++.
T Consensus 27 ~G~I~Pp~~KvGr-~wrv~ 44 (52)
T 2og0_A 27 ESRIFPPPVKDGR-EYLFH 44 (52)
T ss_dssp TTCEESCCEEETT-EEEEE
T ss_pred CCCCCCcccccCC-EEEEc
Confidence 4568889999998 78875
No 18
>1lcs_A Feline leukemia virus receptor-binding domain; antiparallel beta-sandwich glycoprotein, viral protein; HET: NAG MAN BMA NDG TOE; 2.50A {Feline leukemia virus} SCOP: b.20.1.1
Probab=22.21 E-value=80 Score=21.71 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=19.2
Q ss_pred eCCeEEEEEEEeCCCcCCCCCCcEEEEEEecc
Q 041274 48 AGGYKWKLVVYPNGNKNENVKDHISVYLAMVD 79 (109)
Q Consensus 48 vGG~~W~l~~yP~G~~~~~~~~~iSlyL~l~~ 79 (109)
+.|+.|-|++|..|.+. .--+.|-|.+..
T Consensus 177 ~~G~~WGlRlY~~G~dp---G~~ftIrl~i~~ 205 (211)
T 1lcs_A 177 DGPKSWGLRLYRSGYDP---IALFSVSRQVMT 205 (211)
T ss_dssp SSCEEEEEEECCSSCCC---EEEEEEEEEEEC
T ss_pred cCCcEEEEEEeccCCCc---eeEEEEEEEeec
Confidence 48999999999766441 233455555543
No 19
>1aol_A GP70, SU; coat protein, viral glycoprotein, retrovirus, viral protein; HET: NAG; 2.00A {Friend murine leukemia virus} SCOP: b.20.1.1
Probab=21.32 E-value=82 Score=21.89 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=19.3
Q ss_pred eCCeEEEEEEEeCCCcCCCCCCcEEEEEEecc
Q 041274 48 AGGYKWKLVVYPNGNKNENVKDHISVYLAMVD 79 (109)
Q Consensus 48 vGG~~W~l~~yP~G~~~~~~~~~iSlyL~l~~ 79 (109)
+.|+.|-|++|..|.+. .--+.|-|.+.+
T Consensus 194 ~~G~~WGLRlY~~G~dp---G~~ftIrlki~~ 222 (228)
T 1aol_A 194 TTGHYWGLRLYVSGRDP---GLTFGIRLRYQN 222 (228)
T ss_dssp GTCEEEEEEECCTTTCC---EEEEEEEEEEEC
T ss_pred cCCcEeEEEEEecCCCc---eEEEEEEEEeec
Confidence 57999999999876541 233455555543
Done!