Your job contains 1 sequence.
>041275
MATFSLSAAISPSLTVPISSNSKCPVFSVSFPSKNYAGNTLKLEPLSTTNTRVFSAPETL
AGSESSAVEAEVPETLSVSSGADQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAK
TMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAG
VDVEVKL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041275
(187 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2089984 - symbol:AT3G13120 species:3702 "Arabi... 598 3.2e-58 1
TIGR_CMR|GSU_2858 - symbol:GSU_2858 "ribosomal protein S1... 306 2.8e-27 1
TIGR_CMR|CHY_2310 - symbol:CHY_2310 "ribosomal protein S1... 303 5.7e-27 1
UNIPROTKB|P0A5X0 - symbol:rpsJ "30S ribosomal protein S10... 299 1.5e-26 1
TIGR_CMR|BA_0109 - symbol:BA_0109 "ribosomal protein S10"... 295 4.0e-26 1
TIGR_CMR|CPS_0874 - symbol:CPS_0874 "ribosomal protein S1... 292 8.4e-26 1
UNIPROTKB|Q9KNY3 - symbol:rpsJ "30S ribosomal protein S10... 285 4.6e-25 1
TIGR_CMR|SO_0230 - symbol:SO_0230 "ribosomal protein S10"... 285 4.6e-25 1
TIGR_CMR|VC_2597 - symbol:VC_2597 "ribosomal protein S10"... 285 4.6e-25 1
UNIPROTKB|P0A7R5 - symbol:rpsJ species:83333 "Escherichia... 278 2.6e-24 1
TIGR_CMR|SPO_3826 - symbol:SPO_3826 "ribosomal protein S1... 270 1.8e-23 1
TIGR_CMR|CBU_0237 - symbol:CBU_0237 "ribosomal protein S1... 264 7.8e-23 1
TIGR_CMR|DET_0473 - symbol:DET_0473 "ribosomal protein S1... 255 7.0e-22 1
TIGR_CMR|CJE_1876 - symbol:CJE_1876 "ribosomal protein S1... 236 7.2e-20 1
TIGR_CMR|NSE_0265 - symbol:NSE_0265 "ribosomal protein S1... 191 4.2e-15 1
TIGR_CMR|APH_0279 - symbol:APH_0279 "ribosomal protein S1... 189 6.9e-15 1
TIGR_CMR|ECH_0408 - symbol:ECH_0408 "ribosomal protein S1... 189 6.9e-15 1
ASPGD|ASPL0000070889 - symbol:AN4594 species:162425 "Emer... 157 1.7e-11 1
UNIPROTKB|G4N8W1 - symbol:MGG_03372 "40S ribosomal protei... 143 5.2e-10 1
DICTYBASE|DDB_G0279855 - symbol:mrps10 "ribosomal protein... 137 2.2e-09 1
UNIPROTKB|F1SMQ1 - symbol:F1SMQ1 "Uncharacterized protein... 136 2.9e-09 1
FB|FBgn0019936 - symbol:RpS20 "Ribosomal protein S20" spe... 135 3.6e-09 1
CGD|CAL0001384 - symbol:RPS20 species:5476 "Candida albic... 131 9.7e-09 1
UNIPROTKB|F1NH93 - symbol:RPS20 "Uncharacterized protein"... 131 9.7e-09 1
UNIPROTKB|Q3ZBH8 - symbol:RPS20 "40S ribosomal protein S2... 130 1.2e-08 1
UNIPROTKB|J9P9Z7 - symbol:RPS20 "Uncharacterized protein"... 130 1.2e-08 1
UNIPROTKB|P60866 - symbol:RPS20 "40S ribosomal protein S2... 130 1.2e-08 1
UNIPROTKB|F2Z539 - symbol:RPS20 "40S ribosomal protein S2... 130 1.2e-08 1
MGI|MGI:1914677 - symbol:Rps20 "ribosomal protein S20" sp... 130 1.2e-08 1
RGD|2323631 - symbol:LOC100359563 "ribosomal protein S20-... 130 1.2e-08 1
RGD|621037 - symbol:Rps20 "ribosomal protein S20" species... 130 1.2e-08 1
POMBASE|SPCC576.09 - symbol:rps20 "40S ribosomal protein ... 127 2.6e-08 1
WB|WBGene00004489 - symbol:rps-20 species:6239 "Caenorhab... 127 2.6e-08 1
GENEDB_PFALCIPARUM|PF10_0038 - symbol:PF10_0038 "ribosoma... 125 4.2e-08 1
UNIPROTKB|Q8IK02 - symbol:PF10_0038 "40S ribosomal protei... 125 4.2e-08 1
SGD|S000001007 - symbol:RPS20 "Protein component of the s... 125 4.2e-08 1
ZFIN|ZDB-GENE-040426-2284 - symbol:rps20 "ribosomal prote... 125 4.2e-08 1
TAIR|locus:2075949 - symbol:AT3G45030 species:3702 "Arabi... 121 1.1e-07 1
TAIR|locus:2099535 - symbol:AT3G47370 species:3702 "Arabi... 121 1.1e-07 1
TAIR|locus:2167938 - symbol:AT5G62300 species:3702 "Arabi... 121 1.1e-07 1
UNIPROTKB|A1XQU9 - symbol:RPS20 "40S ribosomal protein S2... 120 1.4e-07 1
DICTYBASE|DDB_G0278429 - symbol:rps20 "40S ribosomal prot... 116 3.8e-07 1
POMBASE|SPBC211.01 - symbol:rsm10 "mitochondrial ribosoma... 110 0.00010 1
UNIPROTKB|E2RAR8 - symbol:E2RAR8 "Uncharacterized protein... 102 0.00018 1
SGD|S000002448 - symbol:RSM10 "Mitochondrial ribosomal pr... 106 0.00025 1
>TAIR|locus:2089984 [details] [associations]
symbol:AT3G13120 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0015935 "small ribosomal subunit"
evidence=ISS] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] InterPro:IPR001848
InterPro:IPR018268 PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006412
EMBL:AP000375 GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.70.600 SUPFAM:SSF54999 EMBL:AF385700 EMBL:AF428438
EMBL:AY081727 IPI:IPI00548907 RefSeq:NP_001189875.1
RefSeq:NP_187919.1 UniGene:At.25565 ProteinModelPortal:Q9LK61
SMR:Q9LK61 STRING:Q9LK61 PaxDb:Q9LK61 PRIDE:Q9LK61 ProMEX:Q9LK61
EnsemblPlants:AT3G13120.1 EnsemblPlants:AT3G13120.2 GeneID:820500
KEGG:ath:AT3G13120 GeneFarm:42 TAIR:At3g13120 eggNOG:COG0051
HOGENOM:HOG000270246 InParanoid:Q9LK61 KO:K02946 OMA:ARNTNAK
ProtClustDB:CLSN2714267 Genevestigator:Q9LK61 GermOnline:AT3G13120
PANTHER:PTHR11700 TIGRFAMs:TIGR01049 Uniprot:Q9LK61
Length = 191
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 125/191 (65%), Positives = 143/191 (74%)
Query: 1 MATFSLSAAISPSLTVPISSNSKCPVFSVSFPSKNYAG--NTLKLEPLSTTNTRVFSAPE 58
MA ++S+ + PS +P SS S + PS + G ++ L S + T+VF+ P+
Sbjct: 1 MAVSTVSSFLLPSFGIPSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFAVPD 60
Query: 59 TL--AGXXXXXXXXXXPETLSVSSGADQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAART 116
TL P + S+S AD+MAPKQKIRIKLRSYWVPLIEDSCKQI+DAAR
Sbjct: 61 TLDPTPEILDEPASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARN 120
Query: 117 TNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLD 176
TNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR+IDILYPTAQTIDSLMQLD
Sbjct: 121 TNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRMIDILYPTAQTIDSLMQLD 180
Query: 177 LPAGVDVEVKL 187
LPAGVDVEVKL
Sbjct: 181 LPAGVDVEVKL 191
>TIGR_CMR|GSU_2858 [details] [associations]
symbol:GSU_2858 "ribosomal protein S10" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] HAMAP:MF_00508 InterPro:IPR001848 InterPro:IPR018268
PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051
HOGENOM:HOG000270246 KO:K02946 PANTHER:PTHR11700 TIGRFAMs:TIGR01049
OMA:QQKIRIK ProtClustDB:PRK00596 RefSeq:NP_953901.1
ProteinModelPortal:Q748Z0 SMR:Q748Z0 GeneID:2688708
KEGG:gsu:GSU2858 PATRIC:22028563
BioCyc:GSUL243231:GH27-2832-MONOMER Uniprot:Q748Z0
Length = 102
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 59/101 (58%), Positives = 77/101 (76%)
Query: 87 PKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDA 146
P QKIRI+L+++ L++ S +I+D A+ T A+ GP+PLPT YCVL+ PHV K +
Sbjct: 2 PSQKIRIRLKAFDHKLLDQSVGEIVDTAKRTGARVAGPIPLPTVINKYCVLRGPHVDKKS 61
Query: 147 RFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
R FEIRTH+RLIDIL PT QT+D+LM+LDL AGVDVE+KL
Sbjct: 62 REQFEIRTHKRLIDILDPTQQTVDALMKLDLSAGVDVEIKL 102
>TIGR_CMR|CHY_2310 [details] [associations]
symbol:CHY_2310 "ribosomal protein S10" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] HAMAP:MF_00508 InterPro:IPR001848 InterPro:IPR018268
PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051
KO:K02946 PANTHER:PTHR11700 TIGRFAMs:TIGR01049 OMA:QQKIRIK
HOGENOM:HOG000270244 RefSeq:YP_361119.1 ProteinModelPortal:Q3A9R5
SMR:Q3A9R5 STRING:Q3A9R5 GeneID:3727856 KEGG:chy:CHY_2310
PATRIC:21277691 BioCyc:CHYD246194:GJCN-2309-MONOMER Uniprot:Q3A9R5
Length = 102
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 53/100 (53%), Positives = 80/100 (80%)
Query: 88 KQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 147
KQKIRIKL+++ +++ S +I++ A+ T A GP+PLPT++ +Y VL+SPH+ KD+R
Sbjct: 3 KQKIRIKLKAFEHTILDQSAAKIVETAKRTGASVSGPIPLPTERSLYTVLRSPHIDKDSR 62
Query: 148 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
FE++ H+RLIDI+ PT +TID+LM++DLPAGVD+E+KL
Sbjct: 63 EQFELKVHKRLIDIIDPTPKTIDALMRIDLPAGVDIEIKL 102
>UNIPROTKB|P0A5X0 [details] [associations]
symbol:rpsJ "30S ribosomal protein S10" species:1773
"Mycobacterium tuberculosis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005618 "cell wall" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00508
InterPro:IPR001848 InterPro:IPR018268 PRINTS:PR00971
PROSITE:PS00361 Pfam:PF00338 GO:GO:0005829 GO:GO:0005886
GO:GO:0040007 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
EMBL:BX842574 GO:GO:0003735 Gene3D:3.30.70.600 SUPFAM:SSF54999
eggNOG:COG0051 HOGENOM:HOG000270246 KO:K02946 PANTHER:PTHR11700
TIGRFAMs:TIGR01049 ProtClustDB:PRK00596 OMA:THKRLIQ PIR:G70641
RefSeq:NP_215214.1 RefSeq:NP_335144.1 RefSeq:YP_006514044.1
ProteinModelPortal:P0A5X0 SMR:P0A5X0 PRIDE:P0A5X0
EnsemblBacteria:EBMYCT00000002390 EnsemblBacteria:EBMYCT00000073014
GeneID:13318589 GeneID:888331 GeneID:926017 KEGG:mtc:MT0727
KEGG:mtu:Rv0700 KEGG:mtv:RVBD_0700 PATRIC:18123331
TubercuList:Rv0700 Uniprot:P0A5X0
Length = 101
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 53/98 (54%), Positives = 78/98 (79%)
Query: 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
QKIRI+L++Y I+ S ++I++ T A +GPVPLPT+K +YCV++SPH +KD+R
Sbjct: 4 QKIRIRLKAYDHEAIDASARKIVETVVRTGASVVGPVPLPTEKNVYCVIRSPHKYKDSRE 63
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVK 186
HFE+RTH+RLIDI+ PT +T+D+LM++DLPA VDV ++
Sbjct: 64 HFEMRTHKRLIDIIDPTPKTVDALMRIDLPASVDVNIQ 101
>TIGR_CMR|BA_0109 [details] [associations]
symbol:BA_0109 "ribosomal protein S10" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00508 InterPro:IPR001848 InterPro:IPR018268 PRINTS:PR00971
PROSITE:PS00361 Pfam:PF00338 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051
KO:K02946 PANTHER:PTHR11700 TIGRFAMs:TIGR01049 OMA:QQKIRIK
ProtClustDB:PRK00596 RefSeq:NP_842677.1 RefSeq:YP_016714.1
RefSeq:YP_026395.1 ProteinModelPortal:Q81VT1 SMR:Q81VT1
DNASU:1086341 EnsemblBacteria:EBBACT00000008319
EnsemblBacteria:EBBACT00000013996 EnsemblBacteria:EBBACT00000020402
GeneID:1086341 GeneID:2818872 GeneID:2850094 KEGG:ban:BA_0109
KEGG:bar:GBAA_0109 KEGG:bat:BAS0109 HOGENOM:HOG000270244
BioCyc:BANT260799:GJAJ-120-MONOMER
BioCyc:BANT261594:GJ7F-122-MONOMER Uniprot:Q81VT1
Length = 102
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 52/100 (52%), Positives = 80/100 (80%)
Query: 88 KQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 147
K+KIRI+L++Y +++ S +I++ A+ + A GP+PLPT+K +Y +L++ H +KD+R
Sbjct: 3 KEKIRIRLKAYDHRILDQSADKIVETAKRSGATVSGPIPLPTEKTVYTILRAVHKYKDSR 62
Query: 148 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
FE+RTH+RLIDI+ PT QT+DSLM+LDLP+GVD+E+KL
Sbjct: 63 EQFEMRTHKRLIDIVSPTPQTVDSLMRLDLPSGVDIEIKL 102
>TIGR_CMR|CPS_0874 [details] [associations]
symbol:CPS_0874 "ribosomal protein S10" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS] HAMAP:MF_00508
InterPro:IPR001848 InterPro:IPR018268 PRINTS:PR00971
PROSITE:PS00361 Pfam:PF00338 GO:GO:0006412 GO:GO:0003723
GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051
HOGENOM:HOG000270246 KO:K02946 PANTHER:PTHR11700 TIGRFAMs:TIGR01049
RefSeq:YP_267623.1 ProteinModelPortal:Q487Z2 SMR:Q487Z2
STRING:Q487Z2 PRIDE:Q487Z2 GeneID:3519741 KEGG:cps:CPS_0874
PATRIC:21465041 OMA:THKRLIQ BioCyc:CPSY167879:GI48-960-MONOMER
Uniprot:Q487Z2
Length = 103
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 54/99 (54%), Positives = 78/99 (78%)
Query: 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
Q+IRI+L+++ LI+ S +I+D A+ T A+ GP+PLPT+K Y +L SPHV+KDAR
Sbjct: 4 QRIRIRLKAFDHRLIDQSTAEIVDTAKRTGAQVRGPIPLPTRKERYTILTSPHVNKDARD 63
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
+EIRTH+R+IDI+ PT +T+D+LM+LDL AGVDV++ L
Sbjct: 64 QYEIRTHKRMIDIVEPTEKTVDALMRLDLAAGVDVQISL 102
>UNIPROTKB|Q9KNY3 [details] [associations]
symbol:rpsJ "30S ribosomal protein S10" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] HAMAP:MF_00508 InterPro:IPR001848
InterPro:IPR018268 PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:3.30.70.600 SUPFAM:SSF54999
eggNOG:COG0051 KO:K02946 PANTHER:PTHR11700 TIGRFAMs:TIGR01049
OMA:QQKIRIK ProtClustDB:PRK00596 PIR:G82059 RefSeq:NP_232225.1
ProteinModelPortal:Q9KNY3 SMR:Q9KNY3 DNASU:2615614 GeneID:2615614
KEGG:vch:VC2597 PATRIC:20084220 Uniprot:Q9KNY3
Length = 103
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 54/99 (54%), Positives = 78/99 (78%)
Query: 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
Q+IRI+L+++ LI+ S +I++ A+ T A+ GP+PLPT+K + VL SPHV+KDAR
Sbjct: 4 QRIRIRLKAFDYKLIDASTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARD 63
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
+EIRTH+RLIDI+ PT +T+D+LM+LDL AGVDV++ L
Sbjct: 64 QYEIRTHKRLIDIVEPTDKTVDALMRLDLAAGVDVQISL 102
>TIGR_CMR|SO_0230 [details] [associations]
symbol:SO_0230 "ribosomal protein S10" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00508 InterPro:IPR001848 InterPro:IPR018268 PRINTS:PR00971
PROSITE:PS00361 Pfam:PF00338 GO:GO:0006412 GO:GO:0003723
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051
HOGENOM:HOG000270246 KO:K02946 PANTHER:PTHR11700 TIGRFAMs:TIGR01049
ProtClustDB:PRK00596 OMA:THKRLIQ RefSeq:NP_715870.1
ProteinModelPortal:Q8EK69 SMR:Q8EK69 GeneID:1168113
KEGG:son:SO_0230 PATRIC:23520153 Uniprot:Q8EK69
Length = 103
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 53/99 (53%), Positives = 77/99 (77%)
Query: 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
Q+IRI+L+ + LI+ S +I++ A+ T A+ GP+PLPT+K Y VL SPHV+KDAR
Sbjct: 4 QRIRIRLKGFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERYTVLISPHVNKDARD 63
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
+E+RTH+RL+DI+ PT +T+D+LM+LDL AGVDV++ L
Sbjct: 64 QYELRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISL 102
>TIGR_CMR|VC_2597 [details] [associations]
symbol:VC_2597 "ribosomal protein S10" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00508 InterPro:IPR001848 InterPro:IPR018268 PRINTS:PR00971
PROSITE:PS00361 Pfam:PF00338 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051 KO:K02946
PANTHER:PTHR11700 TIGRFAMs:TIGR01049 OMA:QQKIRIK
ProtClustDB:PRK00596 PIR:G82059 RefSeq:NP_232225.1
ProteinModelPortal:Q9KNY3 SMR:Q9KNY3 DNASU:2615614 GeneID:2615614
KEGG:vch:VC2597 PATRIC:20084220 Uniprot:Q9KNY3
Length = 103
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 54/99 (54%), Positives = 78/99 (78%)
Query: 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
Q+IRI+L+++ LI+ S +I++ A+ T A+ GP+PLPT+K + VL SPHV+KDAR
Sbjct: 4 QRIRIRLKAFDYKLIDASTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARD 63
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
+EIRTH+RLIDI+ PT +T+D+LM+LDL AGVDV++ L
Sbjct: 64 QYEIRTHKRLIDIVEPTDKTVDALMRLDLAAGVDVQISL 102
>UNIPROTKB|P0A7R5 [details] [associations]
symbol:rpsJ species:83333 "Escherichia coli K-12"
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_00508 InterPro:IPR001848 InterPro:IPR018268 PRINTS:PR00971
PROSITE:PS00361 Pfam:PF00338 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006412
EMBL:U18997 GO:GO:0003723 GO:GO:0003735 PDB:3J00 PDBsum:3J00
EMBL:AF058450 DrugBank:DB00698 PDB:3FIH PDB:3IZV PDB:3IZW
PDBsum:3FIH PDBsum:3IZV PDBsum:3IZW GO:GO:0022627 EMBL:V00344
PDB:3D3B PDB:3D3C PDB:3IMQ PDBsum:3D3B PDBsum:3D3C PDBsum:3IMQ
PDB:2KVQ PDBsum:2KVQ PDB:3SFS PDB:3UOQ PDBsum:3SFS PDBsum:3UOQ
EMBL:X02613 Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051
HOGENOM:HOG000270246 KO:K02946 PANTHER:PTHR11700 TIGRFAMs:TIGR01049
PDB:4GAS PDB:4GD1 PDBsum:4GAS PDBsum:4GD1 ProtClustDB:PRK00596
OMA:THKRLIQ PIR:A02720 RefSeq:NP_417780.1 RefSeq:YP_492111.1
PDB:1M5G PDB:1P6G PDB:1P87 PDB:1VS5 PDB:1VS7 PDB:2AVY PDB:2AW7
PDB:2GY9 PDB:2GYB PDB:2I2P PDB:2I2U PDB:2QAL PDB:2QAN PDB:2QB9
PDB:2QBB PDB:2QBD PDB:2QBF PDB:2QBH PDB:2QBJ PDB:2QOU PDB:2QOW
PDB:2QOY PDB:2QP0 PDB:2VHO PDB:2VHP PDB:2WWL PDB:2YKR PDB:2Z4K
PDB:2Z4M PDB:3DF1 PDB:3DF3 PDB:3E1A PDB:3E1C PDB:3I1M PDB:3I1O
PDB:3I1Q PDB:3I1S PDB:3I1Z PDB:3I21 PDB:3J0U PDB:3J0V PDB:3J0X
PDB:3J0Z PDB:3J10 PDB:3J13 PDB:3J18 PDB:3KC4 PDB:3OAQ PDB:3OAR
PDB:3OFA PDB:3OFB PDB:3OFO PDB:3OFP PDB:3OFX PDB:3OFY PDB:3OR9
PDB:3ORA PDB:4A2I PDB:4ADV PDB:4GAQ PDB:4GD2 PDBsum:1M5G
PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5 PDBsum:1VS7 PDBsum:2AVY
PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB PDBsum:2I2P PDBsum:2I2U
PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9 PDBsum:2QBB PDBsum:2QBD
PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ PDBsum:2QOU PDBsum:2QOW
PDBsum:2QOY PDBsum:2QP0 PDBsum:2VHO PDBsum:2VHP PDBsum:2WWL
PDBsum:2YKR PDBsum:2Z4K PDBsum:2Z4M PDBsum:3DF1 PDBsum:3DF3
PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M PDBsum:3I1O PDBsum:3I1Q
PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21 PDBsum:3J0U PDBsum:3J0V
PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10 PDBsum:3J13 PDBsum:3J18
PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR PDBsum:3OFA PDBsum:3OFB
PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX PDBsum:3OFY PDBsum:3OR9
PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV PDBsum:4GAQ PDBsum:4GD2
ProteinModelPortal:P0A7R5 SMR:P0A7R5 DIP:DIP-35797N IntAct:P0A7R5
MINT:MINT-1283940 PaxDb:P0A7R5 PRIDE:P0A7R5
EnsemblBacteria:EBESCT00000001574 EnsemblBacteria:EBESCT00000014911
GeneID:12932299 GeneID:947816 KEGG:ecj:Y75_p3855 KEGG:eco:b3321
PATRIC:32122074 EchoBASE:EB0902 EcoGene:EG10909
BioCyc:EcoCyc:EG10909-MONOMER BioCyc:ECOL316407:JW3283-MONOMER
EvolutionaryTrace:P0A7R5 Genevestigator:P0A7R5 Uniprot:P0A7R5
Length = 103
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 52/99 (52%), Positives = 77/99 (77%)
Query: 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
Q+IRI+L+++ LI+ + +I++ A+ T A+ GP+PLPT+K + VL SPHV+KDAR
Sbjct: 4 QRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARD 63
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
+EIRTH RL+DI+ PT +T+D+LM+LDL AGVDV++ L
Sbjct: 64 QYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL 102
>TIGR_CMR|SPO_3826 [details] [associations]
symbol:SPO_3826 "ribosomal protein S10" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00508 InterPro:IPR001848 PRINTS:PR00971 PROSITE:PS00361
Pfam:PF00338 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:3.30.70.600 SUPFAM:SSF54999
eggNOG:COG0051 HOGENOM:HOG000270246 KO:K02946 PANTHER:PTHR11700
TIGRFAMs:TIGR01049 ProtClustDB:PRK00596 OMA:THKRLIQ
RefSeq:YP_169014.1 ProteinModelPortal:Q5LLU5 SMR:Q5LLU5
GeneID:3196261 KEGG:sil:SPO3826 PATRIC:23381153 Uniprot:Q5LLU5
Length = 104
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 51/99 (51%), Positives = 75/99 (75%)
Query: 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
Q IRI+L+++ +++ S ++I++ A+ T A+ GP+PLP K + VL+ PHV K +R
Sbjct: 4 QNIRIRLKAFDYRVLDASTQEIVNTAKRTGAQVRGPIPLPNKIEKFTVLRGPHVDKKSRD 63
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
FEIRTH+RL+DI+ PT QT+D+LM+LDL AGVDVE+KL
Sbjct: 64 QFEIRTHKRLLDIVDPTPQTVDALMKLDLAAGVDVEIKL 102
>TIGR_CMR|CBU_0237 [details] [associations]
symbol:CBU_0237 "ribosomal protein S10" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] HAMAP:MF_00508 InterPro:IPR001848
InterPro:IPR018268 PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 Gene3D:3.30.70.600
SUPFAM:SSF54999 eggNOG:COG0051 HOGENOM:HOG000270246 KO:K02946
PANTHER:PTHR11700 TIGRFAMs:TIGR01049 ProtClustDB:PRK00596
OMA:THKRLIQ RefSeq:NP_819281.2 ProteinModelPortal:Q83ES5 SMR:Q83ES5
PRIDE:Q83ES5 GeneID:1208118 KEGG:cbu:CBU_0237 PATRIC:17929167
BioCyc:CBUR227377:GJ7S-243-MONOMER Uniprot:Q83ES5
Length = 110
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 53/103 (51%), Positives = 77/103 (74%)
Query: 85 MAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHK 144
M+ Q+IRI+L+++ LI+ S ++I++ AR T A GP+ LPTK Y VL SP++ K
Sbjct: 1 MSDNQRIRIRLKAFDHRLIDRSTREIVETARRTGAIIRGPILLPTKIERYTVLISPNIDK 60
Query: 145 DARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
DAR +EIRTH+RL+DI PT +T+D+LM+LDL AGVDV+++L
Sbjct: 61 DARDQYEIRTHKRLVDISEPTDKTVDALMKLDLAAGVDVQIEL 103
>TIGR_CMR|DET_0473 [details] [associations]
symbol:DET_0473 "ribosomal protein S10" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
HAMAP:MF_00508 InterPro:IPR001848 PRINTS:PR00971 PROSITE:PS00361
Pfam:PF00338 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000027 GenomeReviews:CP000027_GR Gene3D:3.30.70.600
SUPFAM:SSF54999 eggNOG:COG0051 HOGENOM:HOG000270246 KO:K02946
PANTHER:PTHR11700 TIGRFAMs:TIGR01049 OMA:QQKIRIK
ProtClustDB:PRK00596 RefSeq:YP_181217.1 ProteinModelPortal:Q3Z982
SMR:Q3Z982 STRING:Q3Z982 GeneID:3230156 KEGG:det:DET0473
PATRIC:21608015 BioCyc:DETH243164:GJNF-473-MONOMER Uniprot:Q3Z982
Length = 102
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 50/100 (50%), Positives = 73/100 (73%)
Query: 88 KQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 147
KQKIRIKL+ + +++ S QI++A T A GPVPLPT+ + Y V++S + KD++
Sbjct: 3 KQKIRIKLKGFDHKILDQSALQIVEALERTGATISGPVPLPTRIQRYSVIRSSFIDKDSQ 62
Query: 148 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
FEIRTH+RLIDI+ T++TID+L L+LPAGV +++KL
Sbjct: 63 EQFEIRTHKRLIDIVETTSKTIDALTNLNLPAGVSIDIKL 102
>TIGR_CMR|CJE_1876 [details] [associations]
symbol:CJE_1876 "ribosomal protein S10" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00508 InterPro:IPR001848 InterPro:IPR018268 PRINTS:PR00971
PROSITE:PS00361 Pfam:PF00338 GO:GO:0006412 GO:GO:0003723
GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735
Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051
HOGENOM:HOG000270246 KO:K02946 PANTHER:PTHR11700 TIGRFAMs:TIGR01049
ProtClustDB:PRK00596 RefSeq:YP_179846.1 ProteinModelPortal:Q5HS89
STRING:Q5HS89 GeneID:3230635 KEGG:cjr:CJE1876 PATRIC:20045584
OMA:RVPPEIW BioCyc:CJEJ195099:GJC0-1915-MONOMER Uniprot:Q5HS89
Length = 103
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 45/98 (45%), Positives = 69/98 (70%)
Query: 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
++IR+KL++Y +++ + I++A + T A GP+P+PTK + Y VLKSPH++KD+R
Sbjct: 2 ERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKIKRYTVLKSPHINKDSRE 61
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVK 186
FEIR H R++DI+ T T+DSL +LDL V VEV+
Sbjct: 62 QFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVR 99
>TIGR_CMR|NSE_0265 [details] [associations]
symbol:NSE_0265 "ribosomal protein S10" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
HAMAP:MF_00508 InterPro:IPR001848 InterPro:IPR018268 PRINTS:PR00971
PROSITE:PS00361 Pfam:PF00338 GO:GO:0006412 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 EMBL:CP000237 GenomeReviews:CP000237_GR
Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051
HOGENOM:HOG000270246 KO:K02946 PANTHER:PTHR11700 TIGRFAMs:TIGR01049
OMA:QQKIRIK RefSeq:YP_506156.1 ProteinModelPortal:Q2GEE0
STRING:Q2GEE0 GeneID:3931931 KEGG:nse:NSE_0265 PATRIC:22680621
ProtClustDB:CLSK2527645 BioCyc:NSEN222891:GHFU-292-MONOMER
Uniprot:Q2GEE0
Length = 103
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 39/99 (39%), Positives = 61/99 (61%)
Query: 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
+KIRIKL+S+ ++ S K+I+ AA+ A GP+PLPT+ Y V KSPHV K +R
Sbjct: 2 KKIRIKLKSFDSGILHRSTKEIVMAAKRNGALVSGPIPLPTRVSRYTVNKSPHVDKKSRE 61
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
F++ H+ L+++ A + + LPAGVD+ V++
Sbjct: 62 QFQLAVHKCLLELSSFNAHLLSTFTNFQLPAGVDISVEV 100
>TIGR_CMR|APH_0279 [details] [associations]
symbol:APH_0279 "ribosomal protein S10" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS] HAMAP:MF_00508
InterPro:IPR001848 PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:3.30.70.600 SUPFAM:SSF54999
eggNOG:COG0051 HOGENOM:HOG000270246 KO:K02946 PANTHER:PTHR11700
TIGRFAMs:TIGR01049 RefSeq:YP_504891.1 ProteinModelPortal:Q2GL60
STRING:Q2GL60 GeneID:3930033 KEGG:aph:APH_0279 PATRIC:20949132
OMA:QQKIRIK ProtClustDB:PRK00596 BioCyc:APHA212042:GHPM-309-MONOMER
Uniprot:Q2GL60
Length = 105
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 41/99 (41%), Positives = 63/99 (63%)
Query: 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
QKI I+L+++ L++ S + I+ A+ + AK GP+ P + + V +S HV K +R
Sbjct: 4 QKIYIELKAFDHGLLDRSARNIVLVAKRSGAKVNGPIFFPRRTAKFIVNRSTHVDKKSRE 63
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
FEIRTH+RLI + + + +LM L LPAGVDV+VK+
Sbjct: 64 QFEIRTHKRLISLPKANSAILQALMSLQLPAGVDVKVKV 102
>TIGR_CMR|ECH_0408 [details] [associations]
symbol:ECH_0408 "ribosomal protein S10" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
HAMAP:MF_00508 InterPro:IPR001848 PRINTS:PR00971 PROSITE:PS00361
Pfam:PF00338 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:3.30.70.600 SUPFAM:SSF54999
eggNOG:COG0051 HOGENOM:HOG000270246 KO:K02946 PANTHER:PTHR11700
TIGRFAMs:TIGR01049 OMA:QQKIRIK ProtClustDB:PRK00596
RefSeq:YP_507226.1 ProteinModelPortal:Q2GH57 STRING:Q2GH57
GeneID:3927702 KEGG:ech:ECH_0408 PATRIC:20576293
BioCyc:ECHA205920:GJNR-409-MONOMER Uniprot:Q2GH57
Length = 108
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 42/99 (42%), Positives = 63/99 (63%)
Query: 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
QKI I+L+++ L++ S + I+ A+ + A+ GP+ P K + V +S HV K +R
Sbjct: 4 QKIYIELKAFDSCLLDRSARSIILTAKRSGARVNGPIFFPRKIMKFIVNRSTHVDKKSRE 63
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
FEIRTH+RLI + + I +LM L LPAGVDV+VK+
Sbjct: 64 QFEIRTHKRLISLPKANSTIIQALMSLQLPAGVDVKVKV 102
>ASPGD|ASPL0000070889 [details] [associations]
symbol:AN4594 species:162425 "Emericella nidulans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IEA] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IEA] InterPro:IPR001848 InterPro:IPR005729
InterPro:IPR018268 PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 EMBL:BN001303
EMBL:AACD01000079 GO:GO:0015935 Gene3D:3.30.70.600 SUPFAM:SSF54999
eggNOG:COG0051 PANTHER:PTHR11700 HOGENOM:HOG000270245 KO:K02969
OMA:YEMRIHK TIGRFAMs:TIGR01046 OrthoDB:EOG4SFDGK RefSeq:XP_662198.1
ProteinModelPortal:Q5B4D6 SMR:Q5B4D6 STRING:Q5B4D6
EnsemblFungi:CADANIAT00005842 GeneID:2872393 KEGG:ani:AN4594.2
Uniprot:Q5B4D6
Length = 115
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 39/103 (37%), Positives = 62/103 (60%)
Query: 87 PK-QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKD 145
PK KIRI L S V +E C +++ AR+ + + GPV LPTK K+P+
Sbjct: 13 PKVHKIRITLTSRKVASLESVCAALIERARSKSLQVKGPVRLPTKTLHISTRKTPNGEGS 72
Query: 146 ARFH-FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
+ +E+R H+RLID+L PT +T+ ++ +++ AGV+VEV +
Sbjct: 73 KTWDKYEMRIHKRLIDLLAPT-ETVKQII-INIEAGVEVEVTI 113
>UNIPROTKB|G4N8W1 [details] [associations]
symbol:MGG_03372 "40S ribosomal protein S20" species:242507
"Magnaporthe oryzae 70-15" [GO:0043581 "mycelium development"
evidence=IEP] InterPro:IPR001848 InterPro:IPR005729
InterPro:IPR018268 PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 GO:GO:0043581
EMBL:CM001234 GO:GO:0015935 Gene3D:3.30.70.600 SUPFAM:SSF54999
PANTHER:PTHR11700 KO:K02969 TIGRFAMs:TIGR01046
RefSeq:XP_003716574.1 ProteinModelPortal:G4N8W1 SMR:G4N8W1
EnsemblFungi:MGG_03372T0 GeneID:2676891 KEGG:mgr:MGG_03372
Uniprot:G4N8W1
Length = 116
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 37/104 (35%), Positives = 61/104 (58%)
Query: 86 APK-QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHK 144
APK KIRI L S V +E C ++++ A++ + + GPV LPTK K+P
Sbjct: 13 APKTHKIRITLTSRKVQSLEKVCTELIERAKSKDLRVKGPVRLPTKTLKITTRKTPCGEG 72
Query: 145 DARFH-FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
+ +E+R H+RLID+ PT + + ++ +++ AGV+VEV +
Sbjct: 73 SKTWDCYEMRIHKRLIDLNAPT-EIVKQII-VNIEAGVEVEVTI 114
>DICTYBASE|DDB_G0279855 [details] [associations]
symbol:mrps10 "ribosomal protein S10, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR001848 PRINTS:PR00971
dictyBase:DDB_G0279855 Pfam:PF00338 GO:GO:0005739
GenomeReviews:CM000152_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AAFI02000033 Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051
KO:K02946 PANTHER:PTHR11700 RefSeq:XP_641488.1
ProteinModelPortal:Q54WA4 STRING:Q54WA4 PRIDE:Q54WA4
EnsemblProtists:DDB0266863 GeneID:8622228 KEGG:ddi:DDB_G0279855
OMA:IAKRIAW Uniprot:Q54WA4
Length = 131
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 32/84 (38%), Positives = 51/84 (60%)
Query: 108 KQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYP--T 165
K+I AA+ + KT+GP+PLP+ R + V KSPH K +R +E++ ++RL+ I P T
Sbjct: 31 KRIAWAAKLSGIKTVGPLPLPSTSRQWTVNKSPHTDKHSRDQYEMKVNKRLVQIDAPVQT 90
Query: 166 AQTIDSLMQLDLP---AGVDVEVK 186
A +Q LP A VD++++
Sbjct: 91 ADMFVKFVQTKLPPISATVDIKIE 114
>UNIPROTKB|F1SMQ1 [details] [associations]
symbol:F1SMQ1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR001848 InterPro:IPR005729 PRINTS:PR00971 Pfam:PF00338
GO:GO:0006412 GO:GO:0003735 GO:GO:0015935 Gene3D:3.30.70.600
SUPFAM:SSF54999 PANTHER:PTHR11700 TIGRFAMs:TIGR01046
GeneTree:ENSGT00390000003248 EMBL:CU638846
Ensembl:ENSSSCT00000018041 OMA:ATRKSPC Uniprot:F1SMQ1
Length = 119
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 35/112 (31%), Positives = 58/112 (51%)
Query: 80 SGADQMAPK---QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCV 136
SG + P+ +IRI L S V +E C ++ A+ N K GP +PTK
Sbjct: 6 SGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPERMPTKTLRITT 65
Query: 137 LKSPHVHKDARF-HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
K+P + HF++R+H+RLID+ P+ + + + + + GV+VEV +
Sbjct: 66 RKTPCGEGSKTWDHFQMRSHKRLIDLHSPS-EIVKQITSISIEPGVEVEVTI 116
>FB|FBgn0019936 [details] [associations]
symbol:RpS20 "Ribosomal protein S20" species:7227 "Drosophila
melanogaster" [GO:0003735 "structural constituent of ribosome"
evidence=ISS;NAS] [GO:0006412 "translation" evidence=ISS;NAS]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;NAS]
[GO:0005840 "ribosome" evidence=NAS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005811 "lipid particle" evidence=IDA]
InterPro:IPR001848 InterPro:IPR005729 InterPro:IPR018268
PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338 EMBL:AE014297
GO:GO:0005811 GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
GO:GO:0015935 Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051
PANTHER:PTHR11700 KO:K02969 OMA:YEMRIHK TIGRFAMs:TIGR01046 CTD:6224
GeneTree:ENSGT00390000003248 EMBL:Y11119 EMBL:AY071353
EMBL:AY071742 RefSeq:NP_524421.1 UniGene:Dm.2391
ProteinModelPortal:P55828 SMR:P55828 DIP:DIP-18789N IntAct:P55828
MINT:MINT-743882 STRING:P55828 PaxDb:P55828 PRIDE:P55828
EnsemblMetazoa:FBtr0083964 GeneID:42464 KEGG:dme:Dmel_CG15693
FlyBase:FBgn0019936 InParanoid:P55828 OrthoDB:EOG45MKNT
PhylomeDB:P55828 ChiTaRS:RPS20 GenomeRNAi:42464 NextBio:828926
GermOnline:CG15693 Uniprot:P55828
Length = 120
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 31/103 (30%), Positives = 57/103 (55%)
Query: 86 APKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKD 145
A +IRI L S V +E+ C+ +++ A+ N + GPV +PTK K+P
Sbjct: 17 ASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRITTRKTPCGEGS 76
Query: 146 ARF-HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
+ F++R H+R+ID+ P+ + + + +++ GV+VEV +
Sbjct: 77 KTWDRFQMRIHKRIIDLHSPS-EIVKKITSINIEPGVEVEVTI 118
>CGD|CAL0001384 [details] [associations]
symbol:RPS20 species:5476 "Candida albicans" [GO:0022627
"cytosolic small ribosomal subunit" evidence=IEA] [GO:0000462
"maturation of SSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR001848
InterPro:IPR005729 InterPro:IPR018268 PRINTS:PR00971
PROSITE:PS00361 CGD:CAL0001384 Pfam:PF00338 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 EMBL:AACQ01000073 EMBL:AACQ01000072
GO:GO:0015935 Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051
PANTHER:PTHR11700 HOGENOM:HOG000270245 KO:K02969 TIGRFAMs:TIGR01046
RefSeq:XP_716131.1 RefSeq:XP_716215.1 ProteinModelPortal:Q5A389
SMR:Q5A389 STRING:Q5A389 GeneID:3642071 GeneID:3642154
KEGG:cal:CaO19.13732 KEGG:cal:CaO19.6375 Uniprot:Q5A389
Length = 119
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 38/108 (35%), Positives = 57/108 (52%)
Query: 83 DQMAPKQ--KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSP 140
+Q A +Q KIRI L S V +E+ I+ A N GPV +PTK K+P
Sbjct: 11 EQEAEQQIHKIRITLTSTKVKQLENVSANIIRNAAQYNIVKKGPVRMPTKVLKITTRKTP 70
Query: 141 HVHKDARFH-FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
+ + +E+R H+R+ID+ P A T+ + Q+ + GVDVEV +
Sbjct: 71 NGEGSKTWDAYEMRIHKRVIDLQAP-ASTVKRITQITIEPGVDVEVTI 117
>UNIPROTKB|F1NH93 [details] [associations]
symbol:RPS20 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IEA] InterPro:IPR001848 InterPro:IPR005729
InterPro:IPR018268 PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 GO:GO:0022627
Gene3D:3.30.70.600 SUPFAM:SSF54999 PANTHER:PTHR11700 OMA:YEMRIHK
TIGRFAMs:TIGR01046 GeneTree:ENSGT00390000003248 EMBL:AADN02021802
EMBL:AADN02021803 EMBL:AADN02021804 IPI:IPI00582600
Ensembl:ENSGALT00000023311 Uniprot:F1NH93
Length = 117
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 33/106 (31%), Positives = 54/106 (50%)
Query: 83 DQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHV 142
+Q +IRI L S V +E C ++ A+ N K GPV +PTK K+P
Sbjct: 10 EQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 69
Query: 143 HKDARF-HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
+ F++R H+RLID+ P+ + + + + + GV+VEV +
Sbjct: 70 EGSKTWDRFQMRIHKRLIDLHSPS-EIVKQITSISIEPGVEVEVTI 114
>UNIPROTKB|Q3ZBH8 [details] [associations]
symbol:RPS20 "40S ribosomal protein S20" species:9913 "Bos
taurus" [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001848 InterPro:IPR005729
InterPro:IPR018268 PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 GO:GO:0022627
Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051 PANTHER:PTHR11700
HOGENOM:HOG000270245 KO:K02969 OMA:YEMRIHK TIGRFAMs:TIGR01046
EMBL:BC103289 IPI:IPI00715091 RefSeq:NP_001029610.1
UniGene:Bt.49519 ProteinModelPortal:Q3ZBH8 SMR:Q3ZBH8 STRING:Q3ZBH8
PRIDE:Q3ZBH8 Ensembl:ENSBTAT00000025484 GeneID:513222
KEGG:bta:513222 CTD:6224 GeneTree:ENSGT00390000003248
HOVERGEN:HBG004448 InParanoid:Q3ZBH8 OrthoDB:EOG4CVG8C
NextBio:20870759 Uniprot:Q3ZBH8
Length = 119
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 148
+IRI L S V +E C ++ A+ N K GPV +PTK K+P +
Sbjct: 19 RIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWD 78
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
F++R H+RLID+ P+ + + + + + GV+VEV +
Sbjct: 79 RFQMRIHKRLIDLHSPS-EIVKQITSISIEPGVEVEVTI 116
>UNIPROTKB|J9P9Z7 [details] [associations]
symbol:RPS20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015935 "small ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001848 InterPro:IPR005729
InterPro:IPR018268 PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 GO:GO:0015935
Gene3D:3.30.70.600 SUPFAM:SSF54999 PANTHER:PTHR11700 KO:K02969
OMA:YEMRIHK TIGRFAMs:TIGR01046 CTD:6224
GeneTree:ENSGT00390000003248 EMBL:AAEX03015802 RefSeq:XP_535079.2
ProteinModelPortal:J9P9Z7 Ensembl:ENSCAFT00000048473 GeneID:477887
KEGG:cfa:477887 Uniprot:J9P9Z7
Length = 119
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 148
+IRI L S V +E C ++ A+ N K GPV +PTK K+P +
Sbjct: 19 RIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWD 78
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
F++R H+RLID+ P+ + + + + + GV+VEV +
Sbjct: 79 RFQMRIHKRLIDLHSPS-EIVKQITSISIEPGVEVEVTI 116
>UNIPROTKB|P60866 [details] [associations]
symbol:RPS20 "40S ribosomal protein S20" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=NAS;IDA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0006412 "translation" evidence=IC;NAS;TAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006413 "translational initiation" evidence=TAS] [GO:0006414
"translational elongation" evidence=TAS] [GO:0006415 "translational
termination" evidence=TAS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0019058 "viral infectious cycle" evidence=TAS] [GO:0019083
"viral transcription" evidence=TAS] [GO:0044267 "cellular protein
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR001848 InterPro:IPR005729
InterPro:IPR018268 PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338
Reactome:REACT_116125 GO:GO:0000184 GO:GO:0006413 GO:GO:0003723
GO:GO:0003735 EMBL:CH471068 GO:GO:0006415 GO:GO:0006414
GO:GO:0022627 Reactome:REACT_1762 GO:GO:0006614 GO:GO:0019083
Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051 PANTHER:PTHR11700
HOGENOM:HOG000270245 KO:K02969 OMA:YEMRIHK TIGRFAMs:TIGR01046
CTD:6224 HOVERGEN:HBG004448 ChiTaRS:RPS20 EMBL:L06498 EMBL:AB061842
EMBL:AK301342 EMBL:AK311808 EMBL:AC107376 EMBL:BC007507
EMBL:BC087850 EMBL:AB007156 IPI:IPI00012493 IPI:IPI00794659
PIR:S33710 RefSeq:NP_001014.1 RefSeq:NP_001139699.1 UniGene:Hs.8102
ProteinModelPortal:P60866 SMR:P60866 IntAct:P60866
MINT:MINT-5000180 STRING:P60866 PhosphoSite:P60866 DMDM:46397703
PaxDb:P60866 PRIDE:P60866 DNASU:6224 Ensembl:ENST00000009589
Ensembl:ENST00000519807 Ensembl:ENST00000521262 GeneID:6224
KEGG:hsa:6224 UCSC:uc003xsn.2 GeneCards:GC08M056982 HGNC:HGNC:10405
HPA:HPA003570 MIM:603682 neXtProt:NX_P60866 PharmGKB:PA34807
InParanoid:P60866 PhylomeDB:P60866 GenomeRNAi:6224 NextBio:24163
ArrayExpress:P60866 Bgee:P60866 CleanEx:HS_RPS20
Genevestigator:P60866 GermOnline:ENSG00000008988 Uniprot:P60866
Length = 119
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 148
+IRI L S V +E C ++ A+ N K GPV +PTK K+P +
Sbjct: 19 RIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWD 78
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
F++R H+RLID+ P+ + + + + + GV+VEV +
Sbjct: 79 RFQMRIHKRLIDLHSPS-EIVKQITSISIEPGVEVEVTI 116
>UNIPROTKB|F2Z539 [details] [associations]
symbol:RPS20 "40S ribosomal protein S20" species:9823 "Sus
scrofa" [GO:0015935 "small ribosomal subunit" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001848 InterPro:IPR005729
InterPro:IPR018268 PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 GO:GO:0022627
Gene3D:3.30.70.600 SUPFAM:SSF54999 PANTHER:PTHR11700 OMA:YEMRIHK
TIGRFAMs:TIGR01046 GeneTree:ENSGT00390000003248 EMBL:CU407092
ProteinModelPortal:F2Z539 SMR:F2Z539 PRIDE:F2Z539
Ensembl:ENSSSCT00000006848 ArrayExpress:F2Z539 Uniprot:F2Z539
Length = 119
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 148
+IRI L S V +E C ++ A+ N K GPV +PTK K+P +
Sbjct: 19 RIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWD 78
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
F++R H+RLID+ P+ + + + + + GV+VEV +
Sbjct: 79 RFQMRIHKRLIDLHSPS-EIVKQITSISIEPGVEVEVTI 116
>MGI|MGI:1914677 [details] [associations]
symbol:Rps20 "ribosomal protein S20" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=ISO] [GO:0005622
"intracellular" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0015935 "small ribosomal subunit" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001848 InterPro:IPR005729 InterPro:IPR018268
PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338 MGI:MGI:1914677
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 GO:GO:0022627
Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051 PANTHER:PTHR11700
HOGENOM:HOG000270245 KO:K02969 OMA:YEMRIHK TIGRFAMs:TIGR01046
CTD:6224 HOVERGEN:HBG004448 OrthoDB:EOG4CVG8C EMBL:AK002405
EMBL:AK014594 EMBL:BC011323 IPI:IPI00323819 RefSeq:NP_080423.1
UniGene:Mm.21938 UniGene:Mm.473992 ProteinModelPortal:P60867
SMR:P60867 STRING:P60867 PhosphoSite:P60867 PaxDb:P60867
PRIDE:P60867 Ensembl:ENSMUST00000138502 GeneID:67427 KEGG:mmu:67427
InParanoid:P60867 NextBio:324536 Bgee:P60867 CleanEx:MM_RPS20
Genevestigator:P60867 GermOnline:ENSMUSG00000028234 Uniprot:P60867
Length = 119
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 148
+IRI L S V +E C ++ A+ N K GPV +PTK K+P +
Sbjct: 19 RIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWD 78
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
F++R H+RLID+ P+ + + + + + GV+VEV +
Sbjct: 79 RFQMRIHKRLIDLHSPS-EIVKQITSISIEPGVEVEVTI 116
>RGD|2323631 [details] [associations]
symbol:LOC100359563 "ribosomal protein S20-like" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015935 "small
ribosomal subunit" evidence=IEA] InterPro:IPR001848
InterPro:IPR005729 InterPro:IPR018268 PRINTS:PR00971
PROSITE:PS00361 Pfam:PF00338 RGD:2323631 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 GO:GO:0015935 Gene3D:3.30.70.600
SUPFAM:SSF54999 PANTHER:PTHR11700 TIGRFAMs:TIGR01046
GeneTree:ENSGT00390000003248 OrthoDB:EOG4CVG8C IPI:IPI00560192
RefSeq:XP_002727163.1 RefSeq:XP_002729992.1
Ensembl:ENSRNOT00000043008 GeneID:100359563 KEGG:rno:100359563
UCSC:RGD:2323631 Uniprot:D3ZZK1
Length = 119
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 148
+IRI L S V +E C ++ A+ N K GPV +PTK K+P +
Sbjct: 19 RIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVHMPTKTLRITTRKTPCGEGSKTWD 78
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
F++R H+RLID+ P+ + + + + + GV+VEV +
Sbjct: 79 RFQMRIHKRLIDLHSPS-EIVKQITSISIEPGVEVEVTI 116
>RGD|621037 [details] [associations]
symbol:Rps20 "ribosomal protein S20" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006412 "translation" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA]
InterPro:IPR001848 InterPro:IPR005729 InterPro:IPR018268
PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338 RGD:621037
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 GO:GO:0022627
Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051 PANTHER:PTHR11700
OMA:RVPPEIW HOGENOM:HOG000270245 KO:K02969 TIGRFAMs:TIGR01046
CTD:6224 GeneTree:ENSGT00390000003248 HOVERGEN:HBG004448
OrthoDB:EOG4CVG8C EMBL:X51537 EMBL:BC058496 IPI:IPI00475776
PIR:S14682 RefSeq:NP_001007604.1 RefSeq:XP_002726693.1
RefSeq:XP_002727194.1 RefSeq:XP_002729204.1 RefSeq:XP_002729620.1
RefSeq:XP_002730040.1 RefSeq:XP_003753765.1 UniGene:Rn.103133
ProteinModelPortal:P60868 SMR:P60868 IntAct:P60868 STRING:P60868
PhosphoSite:P60868 PRIDE:P60868 Ensembl:ENSRNOT00000011314
Ensembl:ENSRNOT00000051449 GeneID:100359951 GeneID:100362149
GeneID:100362684 GeneID:122772 KEGG:rno:100359951
KEGG:rno:100362149 KEGG:rno:100362684 KEGG:rno:122772
UCSC:RGD:621037 InParanoid:P60868 NextBio:620447
Genevestigator:P60868 GermOnline:ENSRNOG00000029627
GermOnline:ENSRNOG00000030345 GermOnline:ENSRNOG00000030596
Uniprot:P60868
Length = 119
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 148
+IRI L S V +E C ++ A+ N K GPV +PTK K+P +
Sbjct: 19 RIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWD 78
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
F++R H+RLID+ P+ + + + + + GV+VEV +
Sbjct: 79 RFQMRIHKRLIDLHSPS-EIVKQITSISIEPGVEVEVTI 116
>POMBASE|SPCC576.09 [details] [associations]
symbol:rps20 "40S ribosomal protein S20 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006412 "translation" evidence=ISO] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISO] [GO:0042254 "ribosome
biogenesis" evidence=ISO] InterPro:IPR001848 InterPro:IPR005729
PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338 PomBase:SPCC576.09
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003735 GO:GO:0002181
GO:GO:0022627 Gene3D:3.30.70.600 SUPFAM:SSF54999 PANTHER:PTHR11700
HOGENOM:HOG000270245 KO:K02969 OMA:YEMRIHK TIGRFAMs:TIGR01046
EMBL:AF282863 EMBL:U97389 PIR:T41419 RefSeq:NP_588436.1
ProteinModelPortal:O74893 SMR:O74893 MINT:MINT-4681633
STRING:O74893 PRIDE:O74893 EnsemblFungi:SPCC576.09.1 GeneID:2539449
KEGG:spo:SPCC576.09 OrthoDB:EOG4SFDGK NextBio:20800611
Uniprot:O74893
Length = 118
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 33/108 (30%), Positives = 56/108 (51%)
Query: 83 DQMAPK--QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSP 140
+Q P +IRI L S V +E C +++ A+ + GPV LPTK K+P
Sbjct: 10 EQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRKTP 69
Query: 141 HVHKDARFH-FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
+ + +E+R H+RLID+ P+ + + + + + GV+VEV +
Sbjct: 70 NGEGSKTWETYEMRIHKRLIDLHSPS-EIVKQITSIHIEPGVEVEVTI 116
>WB|WBGene00004489 [details] [associations]
symbol:rps-20 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0015935 "small ribosomal subunit" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0009790 "embryo development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS]
InterPro:IPR001848 InterPro:IPR005729 PRINTS:PR00971 Pfam:PF00338
GO:GO:0009792 GO:GO:0040007 GO:GO:0006915 GO:GO:0002119
GO:GO:0006412 GO:GO:0040018 GO:GO:0000003 GO:GO:0003735
GO:GO:0022627 EMBL:AL132876 Gene3D:3.30.70.600 SUPFAM:SSF54999
eggNOG:COG0051 PANTHER:PTHR11700 HOGENOM:HOG000270245 KO:K02969
OMA:YEMRIHK TIGRFAMs:TIGR01046 GeneTree:ENSGT00390000003248
RefSeq:NP_740944.1 ProteinModelPortal:Q8WQA8 SMR:Q8WQA8
DIP:DIP-25099N MINT:MINT-1100749 STRING:Q8WQA8 PaxDb:Q8WQA8
EnsemblMetazoa:Y105E8A.16.1 EnsemblMetazoa:Y105E8A.16.2
GeneID:173309 KEGG:cel:CELE_Y105E8A.16 UCSC:Y105E8A.16.2 CTD:173309
WormBase:Y105E8A.16 InParanoid:Q8WQA8 NextBio:879101 Uniprot:Q8WQA8
Length = 117
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 30/99 (30%), Positives = 53/99 (53%)
Query: 88 KQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 147
+ +IR+ L S V +E C Q++D A+ + GP+ +PTK K+P
Sbjct: 16 EHRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKT 75
Query: 148 F-HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEV 185
+ F++R H+RLI++ P A+ + + + + GVD+EV
Sbjct: 76 WDRFQMRIHKRLINLHAP-AEVLRQITSISIEPGVDIEV 113
>GENEDB_PFALCIPARUM|PF10_0038 [details] [associations]
symbol:PF10_0038 "ribosomal protein S20e,
putative" species:5833 "Plasmodium falciparum" [GO:0022627
"cytosolic small ribosomal subunit" evidence=ISS]
InterPro:IPR001848 InterPro:IPR005729 PRINTS:PR00971 Pfam:PF00338
GO:GO:0006412 GO:GO:0003735 EMBL:AE014185 GO:GO:0022627
Gene3D:3.30.70.600 SUPFAM:SSF54999 PANTHER:PTHR11700
HOGENOM:HOG000270245 KO:K02969 OMA:YEMRIHK TIGRFAMs:TIGR01046
ProtClustDB:PTZ00039 RefSeq:XP_001347323.1
ProteinModelPortal:Q8IK02 SMR:Q8IK02 IntAct:Q8IK02
MINT:MINT-1632498 PRIDE:Q8IK02 EnsemblProtists:PF10_0038:mRNA
GeneID:810196 KEGG:pfa:PF10_0038 EuPathDB:PlasmoDB:PF3D7_1003500
Uniprot:Q8IK02
Length = 118
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 34/98 (34%), Positives = 49/98 (50%)
Query: 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
++IRI L S + IE C IM A+ N GPV LP K KSP +
Sbjct: 17 RRIRIALTSKNLRAIEKVCSDIMKGAKEKNLNVSGPVRLPVKTLRITTRKSPCGEGTNTW 76
Query: 149 -HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEV 185
FE+R ++RLID LY + + + +++ V+VEV
Sbjct: 77 DRFELRIYKRLID-LYSQCEVVTQMTSINIDPVVEVEV 113
>UNIPROTKB|Q8IK02 [details] [associations]
symbol:PF10_0038 "40S ribosomal protein S20e, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] InterPro:IPR001848
InterPro:IPR005729 PRINTS:PR00971 Pfam:PF00338 GO:GO:0006412
GO:GO:0003735 EMBL:AE014185 GO:GO:0022627 Gene3D:3.30.70.600
SUPFAM:SSF54999 PANTHER:PTHR11700 HOGENOM:HOG000270245 KO:K02969
OMA:YEMRIHK TIGRFAMs:TIGR01046 ProtClustDB:PTZ00039
RefSeq:XP_001347323.1 ProteinModelPortal:Q8IK02 SMR:Q8IK02
IntAct:Q8IK02 MINT:MINT-1632498 PRIDE:Q8IK02
EnsemblProtists:PF10_0038:mRNA GeneID:810196 KEGG:pfa:PF10_0038
EuPathDB:PlasmoDB:PF3D7_1003500 Uniprot:Q8IK02
Length = 118
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 34/98 (34%), Positives = 49/98 (50%)
Query: 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
++IRI L S + IE C IM A+ N GPV LP K KSP +
Sbjct: 17 RRIRIALTSKNLRAIEKVCSDIMKGAKEKNLNVSGPVRLPVKTLRITTRKSPCGEGTNTW 76
Query: 149 -HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEV 185
FE+R ++RLID LY + + + +++ V+VEV
Sbjct: 77 DRFELRIYKRLID-LYSQCEVVTQMTSINIDPVVEVEV 113
>SGD|S000001007 [details] [associations]
symbol:RPS20 "Protein component of the small (40S) ribosomal
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0003735
"structural constituent of ribosome" evidence=IEA;IC] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0002181 "cytoplasmic translation" evidence=IC] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0015935 "small ribosomal subunit" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001848 InterPro:IPR005729
InterPro:IPR018268 PRINTS:PR00971 PROSITE:PS00361 SGD:S000001007
Pfam:PF00338 EMBL:BK006934 GO:GO:0003723 GO:GO:0003735
GO:GO:0002181 EMBL:U11582 GO:GO:0000462 PDB:1S1H PDBsum:1S1H
GO:GO:0022627 PDB:3IZB PDB:3O2Z PDB:3O30 PDB:3U5C PDB:3U5G
PDBsum:3IZB PDBsum:3O2Z PDBsum:3O30 PDBsum:3U5C PDBsum:3U5G
Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051 PANTHER:PTHR11700
PDB:1K5X PDBsum:1K5X HOGENOM:HOG000270245 KO:K02969 OMA:YEMRIHK
TIGRFAMs:TIGR01046 GeneTree:ENSGT00390000003248 OrthoDB:EOG4SFDGK
EMBL:Z29089 PIR:S46829 RefSeq:NP_011848.1 ProteinModelPortal:P38701
SMR:P38701 DIP:DIP-4060N IntAct:P38701 MINT:MINT-539826
STRING:P38701 PaxDb:P38701 PeptideAtlas:P38701 PRIDE:P38701
EnsemblFungi:YHL015W GeneID:856371 KEGG:sce:YHL015W
EvolutionaryTrace:P38701 NextBio:981849 Genevestigator:P38701
GermOnline:YHL015W Uniprot:P38701
Length = 121
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 35/97 (36%), Positives = 49/97 (50%)
Query: 90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 149
KIRI L S V +E+ I+ A N GPV LPTK K+P+ +
Sbjct: 21 KIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWE 80
Query: 150 -FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEV 185
+E+R H+R ID+ P Q + + Q+ + GVDVEV
Sbjct: 81 TYEMRIHKRYIDLEAPV-QIVKRITQITIEPGVDVEV 116
>ZFIN|ZDB-GENE-040426-2284 [details] [associations]
symbol:rps20 "ribosomal protein S20" species:7955
"Danio rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0015935 "small
ribosomal subunit" evidence=IEA] InterPro:IPR001848
InterPro:IPR005729 InterPro:IPR018268 PRINTS:PR00971
PROSITE:PS00361 Pfam:PF00338 ZFIN:ZDB-GENE-040426-2284
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 GO:GO:0015935
Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051 PANTHER:PTHR11700
HOGENOM:HOG000270245 KO:K02969 TIGRFAMs:TIGR01046 CTD:6224
GeneTree:ENSGT00390000003248 HOVERGEN:HBG004448 OrthoDB:EOG4CVG8C
EMBL:CR407553 EMBL:CABZ01086840 EMBL:BC062282 EMBL:BC152693
IPI:IPI00492664 RefSeq:NP_998369.1 UniGene:Dr.18943 SMR:Q6P6E7
STRING:Q6P6E7 Ensembl:ENSDART00000052331 GeneID:406485
KEGG:dre:406485 InParanoid:Q6P6E7 NextBio:20818072 Uniprot:Q6P6E7
Length = 119
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 148
+IRI L S V +E C ++ A+ + K GPV +PTK K+P +
Sbjct: 19 RIRITLTSRNVKSLEKVCADLIRGAKEKSLKVKGPVRMPTKTLRITTRKTPCGEGSKTWD 78
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
F++R H+RLID+ P+ + + + + + GV+VEV +
Sbjct: 79 RFQMRIHKRLIDLHSPS-EIVKQITSISIEPGVEVEVTI 116
>TAIR|locus:2075949 [details] [associations]
symbol:AT3G45030 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0015935 "small ribosomal subunit"
evidence=IEA;ISS] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001848
InterPro:IPR005729 InterPro:IPR018268 PRINTS:PR00971
PROSITE:PS00361 Pfam:PF00338 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005618 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
EMBL:AB019235 EMBL:AL353992 GO:GO:0022627 Gene3D:3.30.70.600
SUPFAM:SSF54999 eggNOG:COG0051 PANTHER:PTHR11700 EMBL:AF325017
EMBL:AF370460 EMBL:AY096646 EMBL:AY114024 EMBL:AY085673 EMBL:Z27060
EMBL:Z26188 EMBL:Z26558 IPI:IPI00527199 RefSeq:NP_001078781.1
RefSeq:NP_190089.2 RefSeq:NP_201036.1 UniGene:At.1758
UniGene:At.23495 ProteinModelPortal:P49200 SMR:P49200 STRING:P49200
PaxDb:P49200 PRIDE:P49200 ProMEX:P49200 EnsemblPlants:AT3G45030.1
EnsemblPlants:AT5G62300.1 EnsemblPlants:AT5G62300.2 GeneID:823638
GeneID:836351 KEGG:ath:AT3G45030 KEGG:ath:AT5G62300 GeneFarm:916
GeneFarm:926 TAIR:At3g45030 TAIR:At5g62300 HOGENOM:HOG000270245
InParanoid:P49200 KO:K02969 OMA:YEMRIHK PhylomeDB:P49200
ProtClustDB:CLSN2685167 Genevestigator:P49200 GermOnline:AT3G45030
TIGRFAMs:TIGR01046 Uniprot:P49200
Length = 124
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 31/99 (31%), Positives = 50/99 (50%)
Query: 90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 148
KIRI L S V +E C ++ A+ + GPV +PTK K+P +
Sbjct: 24 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWD 83
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
FE+R H+R+ID L+ + + + + + GV+VEV +
Sbjct: 84 RFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 121
>TAIR|locus:2099535 [details] [associations]
symbol:AT3G47370 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0015935 "small ribosomal subunit"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0022626
"cytosolic ribosome" evidence=IDA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0001510 "RNA methylation" evidence=RCA] InterPro:IPR001848
InterPro:IPR005729 InterPro:IPR018268 PRINTS:PR00971
PROSITE:PS00361 Pfam:PF00338 GO:GO:0009506 GO:GO:0005618
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 EMBL:AL096860
GO:GO:0022627 Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051
PANTHER:PTHR11700 OMA:RVPPEIW HOGENOM:HOG000270245 KO:K02969
ProtClustDB:CLSN2685167 TIGRFAMs:TIGR01046 EMBL:BT003067
EMBL:AK227448 EMBL:AK227766 EMBL:AY088633 IPI:IPI00524237
PIR:T12992 RefSeq:NP_001030826.1 RefSeq:NP_190321.1
RefSeq:NP_850665.1 UniGene:At.35815 ProteinModelPortal:Q9STY6
SMR:Q9STY6 STRING:Q9STY6 PaxDb:Q9STY6 PRIDE:Q9STY6
EnsemblPlants:AT3G47370.1 EnsemblPlants:AT3G47370.2
EnsemblPlants:AT3G47370.3 GeneID:823891 KEGG:ath:AT3G47370
GeneFarm:921 TAIR:At3g47370 InParanoid:Q9STY6 PhylomeDB:Q9STY6
Genevestigator:Q9STY6 GermOnline:AT3G47370 Uniprot:Q9STY6
Length = 122
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 31/99 (31%), Positives = 50/99 (50%)
Query: 90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 148
KIRI L S V +E C ++ A+ + GPV +PTK K+P +
Sbjct: 22 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWD 81
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
FE+R H+R+ID L+ + + + + + GV+VEV +
Sbjct: 82 RFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 119
>TAIR|locus:2167938 [details] [associations]
symbol:AT5G62300 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0015935 "small ribosomal subunit"
evidence=IEA;ISS] [GO:0005618 "cell wall" evidence=IDA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0005794 "Golgi apparatus" evidence=RCA]
InterPro:IPR001848 InterPro:IPR005729 InterPro:IPR018268
PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005618 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
EMBL:AB019235 EMBL:AL353992 GO:GO:0022627 Gene3D:3.30.70.600
SUPFAM:SSF54999 eggNOG:COG0051 PANTHER:PTHR11700 EMBL:AF325017
EMBL:AF370460 EMBL:AY096646 EMBL:AY114024 EMBL:AY085673 EMBL:Z27060
EMBL:Z26188 EMBL:Z26558 IPI:IPI00527199 RefSeq:NP_001078781.1
RefSeq:NP_190089.2 RefSeq:NP_201036.1 UniGene:At.1758
UniGene:At.23495 ProteinModelPortal:P49200 SMR:P49200 STRING:P49200
PaxDb:P49200 PRIDE:P49200 ProMEX:P49200 EnsemblPlants:AT3G45030.1
EnsemblPlants:AT5G62300.1 EnsemblPlants:AT5G62300.2 GeneID:823638
GeneID:836351 KEGG:ath:AT3G45030 KEGG:ath:AT5G62300 GeneFarm:916
GeneFarm:926 TAIR:At3g45030 TAIR:At5g62300 HOGENOM:HOG000270245
InParanoid:P49200 KO:K02969 OMA:YEMRIHK PhylomeDB:P49200
ProtClustDB:CLSN2685167 Genevestigator:P49200 GermOnline:AT3G45030
TIGRFAMs:TIGR01046 Uniprot:P49200
Length = 124
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 31/99 (31%), Positives = 50/99 (50%)
Query: 90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 148
KIRI L S V +E C ++ A+ + GPV +PTK K+P +
Sbjct: 24 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWD 83
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
FE+R H+R+ID L+ + + + + + GV+VEV +
Sbjct: 84 RFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 121
>UNIPROTKB|A1XQU9 [details] [associations]
symbol:RPS20 "40S ribosomal protein S20" species:9823 "Sus
scrofa" [GO:0015935 "small ribosomal subunit" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001848 InterPro:IPR005729
InterPro:IPR018268 PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 GO:GO:0015935
Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051 PANTHER:PTHR11700
HOGENOM:HOG000270245 KO:K02969 TIGRFAMs:TIGR01046 CTD:6224
HOVERGEN:HBG004448 OrthoDB:EOG4CVG8C EMBL:DQ629171
RefSeq:NP_001123426.1 UniGene:Ssc.18730 ProteinModelPortal:A1XQU9
SMR:A1XQU9 STRING:A1XQU9 GeneID:414395 KEGG:ssc:414395
Uniprot:A1XQU9
Length = 119
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/99 (31%), Positives = 51/99 (51%)
Query: 90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 148
+IRI L S V +E C ++ A+ N K GPV +PTK K+P +
Sbjct: 19 RIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWD 78
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
F++R +RLID+ P+ + + + + + GV+VEV +
Sbjct: 79 RFQMRIPKRLIDLHSPS-EIVKQITSISIEPGVEVEVTI 116
>DICTYBASE|DDB_G0278429 [details] [associations]
symbol:rps20 "40S ribosomal protein S20"
species:44689 "Dictyostelium discoideum" [GO:0015935 "small
ribosomal subunit" evidence=IEA] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001848
InterPro:IPR005729 PRINTS:PR00971 PROSITE:PS00361
dictyBase:DDB_G0278429 Pfam:PF00338 GenomeReviews:CM000152_GR
GO:GO:0006412 EMBL:AAFI02000023 GO:GO:0003723 GO:GO:0003735
GO:GO:0015935 Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051
PANTHER:PTHR11700 KO:K02969 OMA:YEMRIHK TIGRFAMs:TIGR01046
RefSeq:XP_642361.1 ProteinModelPortal:Q54Y41 SMR:Q54Y41
STRING:Q54Y41 EnsemblProtists:DDB0231060 GeneID:8621566
KEGG:ddi:DDB_G0278429 ProtClustDB:PTZ00039 Uniprot:Q54Y41
Length = 124
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 35/102 (34%), Positives = 48/102 (47%)
Query: 86 APK-QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHK 144
AP KI I L S +E C I+ A+ K GP+ +P K KSP
Sbjct: 15 APAVNKISITLTSRNPKSLEKVCADIITLAKNKKVKAKGPIRIPNKVLKITTRKSPCGEG 74
Query: 145 DARF-HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEV 185
+ FE+R H+R+I IL T + + + + AGVDVEV
Sbjct: 75 TNTWDRFEMRIHKRVIHIL-STQDFVKEMNTISIEAGVDVEV 115
>POMBASE|SPBC211.01 [details] [associations]
symbol:rsm10 "mitochondrial ribosomal protein subunit S10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0032543 "mitochondrial translation" evidence=NAS]
InterPro:IPR001848 PRINTS:PR00971 Pfam:PF00338 PomBase:SPBC211.01
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003735 GO:GO:0032543
GO:GO:0005763 Gene3D:3.30.70.600 SUPFAM:SSF54999 eggNOG:COG0051
PANTHER:PTHR11700 TIGRFAMs:TIGR01049 OrthoDB:EOG4ZW8MF
RefSeq:NP_596611.3 STRING:O60186 GeneID:2540539 NextBio:20801665
Uniprot:O60186
Length = 228
Score = 110 (43.8 bits), Expect = 0.00010, P = 0.00010
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 93 IKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEI 152
+K++S+ P ++ I A GP PLP K + +L+SP +HK ++ +FE
Sbjct: 71 LKIKSFETPKLDTFTDFICRTAYYMKIPIKGPRPLPNKVESWTLLRSPFIHKSSQENFER 130
Query: 153 RTHQRLIDILYPTAQTIDS 171
TH RLI + T+++
Sbjct: 131 ITHSRLIQLYSVNPVTLET 149
>UNIPROTKB|E2RAR8 [details] [associations]
symbol:E2RAR8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015935 "small ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001848 InterPro:IPR005729
InterPro:IPR018268 PRINTS:PR00971 PROSITE:PS00361 Pfam:PF00338
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 GO:GO:0015935
Gene3D:3.30.70.600 SUPFAM:SSF54999 PANTHER:PTHR11700
TIGRFAMs:TIGR01046 GeneTree:ENSGT00390000003248 EMBL:AAEX03013173
EMBL:AAEX03013174 EMBL:AAEX03013175 EMBL:AAEX03013176
Ensembl:ENSCAFT00000007728 OMA:HRITITL Uniprot:E2RAR8
Length = 153
Score = 102 (41.0 bits), Expect = 0.00018, P = 0.00018
Identities = 27/99 (27%), Positives = 49/99 (49%)
Query: 90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 148
++ L S V +E C ++ A+ N K GPV +PTK ++P +
Sbjct: 53 QVESPLPSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLKITTRQTPCGEGSKIWD 112
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
F++R H+RLID+ P+ + + + + + V+VEV +
Sbjct: 113 RFQMRIHKRLIDLHNPS-EIVKQITSISIEPEVEVEVTI 150
>SGD|S000002448 [details] [associations]
symbol:RSM10 "Mitochondrial ribosomal protein of the small
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005763
"mitochondrial small ribosomal subunit" evidence=IPI] [GO:0003735
"structural constituent of ribosome" evidence=IEA;IPI] [GO:0032543
"mitochondrial translation" evidence=IC] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR001848 PRINTS:PR00971 PROSITE:PS00361
SGD:S000002448 Pfam:PF00338 EMBL:BK006938 GO:GO:0003735
GO:GO:0032543 EMBL:Z54075 GO:GO:0005763 Gene3D:3.30.70.600
SUPFAM:SSF54999 eggNOG:COG0051 PANTHER:PTHR11700 TIGRFAMs:TIGR01049
HOGENOM:HOG000217816 OrthoDB:EOG4ZW8MF EMBL:AY557648 PIR:S59279
RefSeq:NP_010326.1 ProteinModelPortal:Q03201 SMR:Q03201
DIP:DIP-6669N IntAct:Q03201 MINT:MINT-645477 STRING:Q03201
PaxDb:Q03201 EnsemblFungi:YDR041W GeneID:851611 KEGG:sce:YDR041W
CYGD:YDR041w OMA:ENFERHT NextBio:969127 Genevestigator:Q03201
GermOnline:YDR041W Uniprot:Q03201
Length = 203
Score = 106 (42.4 bits), Expect = 0.00025, P = 0.00025
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 93 IKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEI 152
I+LRSY ++ I+ GP PLPT++ + V+KSP VH ++ +FE
Sbjct: 45 IQLRSYDNENLDFYSDFILRTGYYLGIPLTGPKPLPTRRERWTVIKSPFVHAKSKENFER 104
Query: 153 RTHQRLI 159
TH+RLI
Sbjct: 105 HTHKRLI 111
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.130 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 187 177 0.00084 109 3 11 22 0.42 32
31 0.50 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 45
No. of states in DFA: 587 (62 KB)
Total size of DFA: 140 KB (2086 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.65u 0.39s 14.04t Elapsed: 00:00:01
Total cpu time: 13.66u 0.39s 14.05t Elapsed: 00:00:01
Start: Fri May 10 05:48:35 2013 End: Fri May 10 05:48:36 2013