Query 041275
Match_columns 187
No_of_seqs 134 out of 735
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:54:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_J Ribosomal protein S10; 100.0 1.2E-49 4.2E-54 331.6 9.3 187 1-187 1-197 (197)
2 3j20_L 30S ribosomal protein S 100.0 3.7E-37 1.3E-41 233.2 9.5 98 89-187 2-100 (102)
3 3r8n_J 30S ribosomal protein S 100.0 8.7E-38 3E-42 234.5 3.5 98 90-187 1-98 (98)
4 3u5c_U 40S ribosomal protein S 100.0 6.5E-36 2.2E-40 232.8 12.5 100 87-187 18-118 (121)
5 2xzm_J Ribosomal protein S10 c 100.0 2.4E-35 8.2E-40 229.2 13.1 99 88-187 16-116 (120)
6 2vqe_J 30S ribosomal protein S 100.0 2.5E-36 8.6E-41 228.9 1.2 99 89-187 2-100 (105)
7 3iz6_J 40S ribosomal protein S 100.0 9.3E-36 3.2E-40 234.0 4.3 99 88-187 26-125 (128)
8 2zkq_j 40S ribosomal protein S 100.0 5.8E-35 2E-39 226.7 7.7 99 88-187 17-116 (119)
9 3d3c_J 30S ribosomal protein S 99.9 1.3E-24 4.4E-29 160.5 9.4 84 82-187 3-86 (87)
10 3r2c_J Protein NUSE, 30S ribos 99.9 2.6E-23 8.8E-28 152.4 9.5 79 88-187 3-81 (83)
11 2ln3_A De novo designed protei 42.5 37 0.0013 23.6 4.3 35 90-124 28-62 (83)
12 3bbo_K Ribosomal protein L11; 25.6 30 0.001 29.0 1.9 34 98-131 187-220 (224)
13 3izc_n 60S ribosomal protein R 21.7 55 0.0019 23.1 2.4 51 132-183 21-75 (78)
No 1
>3bbn_J Ribosomal protein S10; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.2e-49 Score=331.60 Aligned_cols=187 Identities=68% Similarity=0.945 Sum_probs=97.7
Q ss_pred Cccccccee-ecCCcccCCC-CCCCCCCceeecccccCCCCcccc-CCCCccce---eeeeCCccCCCCCCC-c---ccc
Q 041275 1 MATFSLSAA-ISPSLTVPIS-SNSKCPVFSVSFPSKNYAGNTLKL-EPLSTTNT---RVFSAPETLAGSESS-A---VEA 70 (187)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~-~---~~~ 70 (187)
||++|++++ ++|+|.++++ .+++++++.||+.+++|+-...-- .+++.+.+ +||++||+|+++... + -+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 80 (197)
T 3bbn_J 1 MATSSLSTIVFSPLALSNSSSFPNKPQVSNLSLHSSLSNLRRTLSHSSPSSSSSSNVRVFAAPEVLESQETGPESYVEEG 80 (197)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcceeeeeeecccccccCCccccccccccccchhccCCchhhhccCCCcccccccccEEEechhHhhccCCCCcceEecc
Confidence 899999998 6799977764 678999999999998843222110 24556666 899999999986321 0 111
Q ss_pred ccceeeeecCCccccCcccEEEEEEEecChhhHHHHHHHHHHHHHHhCCeeeccccCCCcceEEEEeecCCcCCCceeeE
Q 041275 71 EVPETLSVSSGADQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHF 150 (187)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~kIrIkLkS~d~~~Le~~~~~I~~~ak~~~i~v~GPipLPTKk~r~TVLRSPHV~KKSrEqF 150 (187)
.+.++++++.|+|.|++.++|||+|+|||++.||++|++|+++|+.+|++++||++||||+++||+|||||+|||+||||
T Consensus 81 ~~~~~~~~~~e~~~m~~~~kIRI~LkS~D~k~Ld~~~~~Iv~~Ak~tg~~V~GPIpLPTK~~r~TVLRSPHv~KKSREQF 160 (197)
T 3bbn_J 81 SETSALGIGADSDQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHF 160 (197)
T ss_dssp ------------------CCSEEEEEESCHHHHHHHTTHHHHTTTTTSSCEEEEEECCCEEEEECCCCSSSSCCSSCCCE
T ss_pred ccccceeecCcccccccCcEEEEEEEeCCHHHHHHHHHHHHHHHHHhCCeeecCcCCCCeeEEEEEeeCCCCCCCcceeE
Confidence 24468999999999976789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEEECCCHHHHHHHHccCCCCCceEEEEC
Q 041275 151 EIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187 (187)
Q Consensus 151 EiRtHKR~I~I~~~t~~~i~~liq~~lP~GV~IeVkl 187 (187)
|||+|||+|+|++.+++++++|+++++|+||+|||++
T Consensus 161 EmRtHKRlIdI~~~t~~tvd~lm~l~LP~GV~IEIkl 197 (197)
T 3bbn_J 161 EIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197 (197)
T ss_dssp EEEEEEEEEEESSCCHHHHHHHTTCCCCSSCEEEEEC
T ss_pred EEEEEEEEEEEECCCHHHHHHHHcCcCCCCCEEEEeC
Confidence 9999999999999999999999999999999999986
No 2
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.7e-37 Score=233.20 Aligned_cols=98 Identities=35% Similarity=0.551 Sum_probs=95.3
Q ss_pred cEEEEEEEecChhhHHHHHHHHHHHHHHhCCeeeccccCCCcceEEEEeecCCcC-CCceeeEEEEEEEEEEEEECCCHH
Q 041275 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVH-KDARFHFEIRTHQRLIDILYPTAQ 167 (187)
Q Consensus 89 ~kIrIkLkS~d~~~Le~~~~~I~~~ak~~~i~v~GPipLPTKk~r~TVLRSPHV~-KKSrEqFEiRtHKR~I~I~~~t~~ 167 (187)
++|+|+|+|||+..||.+|.+|.++|+.+|++++||+||||++++||+||||||| ||+|||||+|+|||+|+| +++++
T Consensus 2 ~kirI~LkS~d~~~Ld~~~~~i~~~ak~~g~~v~GpiplPtk~~~~TvlrSPhv~gkksreqfE~r~hkRlIdi-~~~~~ 80 (102)
T 3j20_L 2 QKARIKIASTNVRSLDEVANQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRWELRVHKRLIDI-EADER 80 (102)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHHHHSSSCEEEEEEEEEEEEECCEEECCSSCCSSCCEEECCEEEEEEEEEE-EECHH
T ss_pred cEEEEEEEECCHHHHHHHHHHHHHHHHHhCCcccccccCCCcceEEEEEecCCCCCCcchhheEEEEEEEEEEE-eCCHH
Confidence 7899999999999999999999999999999999999999999999999999999 799999999999999999 57899
Q ss_pred HHHHHHccCCCCCceEEEEC
Q 041275 168 TIDSLMQLDLPAGVDVEVKL 187 (187)
Q Consensus 168 ~i~~liq~~lP~GV~IeVkl 187 (187)
++++|+++++|+||+|||++
T Consensus 81 ~v~~l~~~~lp~GV~vei~~ 100 (102)
T 3j20_L 81 AMRQIMRIRVPEDVTIEIEL 100 (102)
T ss_dssp HHHHHTTSCCCSSCEEEEEE
T ss_pred HHHHHhcCcCCCCcEEEEEE
Confidence 99999999999999999985
No 3
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_J 3fih_J* 3j18_J* 2wwl_J 3oar_J 3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J 4a2i_J 4gd1_J 4gd2_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* ...
Probab=100.00 E-value=8.7e-38 Score=234.55 Aligned_cols=98 Identities=52% Similarity=0.882 Sum_probs=95.7
Q ss_pred EEEEEEEecChhhHHHHHHHHHHHHHHhCCeeeccccCCCcceEEEEeecCCcCCCceeeEEEEEEEEEEEEECCCHHHH
Q 041275 90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTI 169 (187)
Q Consensus 90 kIrIkLkS~d~~~Le~~~~~I~~~ak~~~i~v~GPipLPTKk~r~TVLRSPHV~KKSrEqFEiRtHKR~I~I~~~t~~~i 169 (187)
+|+|+|+|||+..||++|.+|.++|+.+|++++||++|||++++||+|||||||||+|||||+|+|+|+|+|.+++++++
T Consensus 1 ~irI~L~s~d~~~Ld~~~~~i~~~ak~~g~~v~Gpi~lPtk~~~~tvlrSPh~~kksreqfE~rthkRlIdi~~~~~~~v 80 (98)
T 3r8n_J 1 RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTV 80 (98)
T ss_dssp CBCCEEEBSCHHHHHHHHHHHHHHHHHSSCCCCCCCCCCCCEEEEEECCSSSSCTTCCEEEEEECBCCCCCBSCCCTTTT
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHhCCeeccccCCCCeEEEEEEecCCCCCCchhHhEEEEEEEEEEEEeCCCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HHHHccCCCCCceEEEEC
Q 041275 170 DSLMQLDLPAGVDVEVKL 187 (187)
Q Consensus 170 ~~liq~~lP~GV~IeVkl 187 (187)
+.|+++++|+||+|+|++
T Consensus 81 ~~l~~~~lp~GV~vev~~ 98 (98)
T 3r8n_J 81 DALMRLDLAAGVDVQISL 98 (98)
T ss_dssp TTTTTCCCCTTCEEECCC
T ss_pred HHHHcCcCCCCcEEEEEC
Confidence 999999999999999985
No 4
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J*
Probab=100.00 E-value=6.5e-36 Score=232.83 Aligned_cols=100 Identities=34% Similarity=0.456 Sum_probs=96.3
Q ss_pred cccEEEEEEEecChhhHHHHHHHHHHHHHHhCCeeeccccCCCcceEEEEeecCCcC-CCceeeEEEEEEEEEEEEECCC
Q 041275 87 PKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVH-KDARFHFEIRTHQRLIDILYPT 165 (187)
Q Consensus 87 ~~~kIrIkLkS~d~~~Le~~~~~I~~~ak~~~i~v~GPipLPTKk~r~TVLRSPHV~-KKSrEqFEiRtHKR~I~I~~~t 165 (187)
..++|+|+|+|||+..||++|.+|.++|+.+|+.++||+||||++++||+||||||| ||+|||||+|+|||+|+|.+ +
T Consensus 18 ~~~kIrI~LkS~d~~~Ld~~~~~I~~~ak~~g~~v~GPipLPtk~~r~TvlRSPhv~gKkSreqFE~RtHKRlIdI~~-~ 96 (121)
T 3u5c_U 18 QIIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWETYEMRIHKRYIDLEA-P 96 (121)
T ss_dssp CCCCEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEEEEEEEEEESSSSSCSSCCEEEEEEEEEEEEEEECC-C
T ss_pred cccEEEEEEEECCHHHHHHHHHHHHHHHHHhCCeeecCcCCCCcceEEEEEcCCCCCCCcchhheEEEEEEEEEEecC-C
Confidence 458899999999999999999999999999999999999999999999999999998 89999999999999999996 4
Q ss_pred HHHHHHHHccCCCCCceEEEEC
Q 041275 166 AQTIDSLMQLDLPAGVDVEVKL 187 (187)
Q Consensus 166 ~~~i~~liq~~lP~GV~IeVkl 187 (187)
++++++|+++++|+||+|+|++
T Consensus 97 ~~~v~~l~~~~lp~GV~vei~i 118 (121)
T 3u5c_U 97 VQIVKRITQITIEPGVDVEVVV 118 (121)
T ss_dssp HHHHHHHHHSSCCTTCEEEECC
T ss_pred HHHHHHHHcCcCCCCCEEEEEE
Confidence 8999999999999999999985
No 5
>2xzm_J Ribosomal protein S10 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_J
Probab=100.00 E-value=2.4e-35 Score=229.17 Aligned_cols=99 Identities=26% Similarity=0.478 Sum_probs=96.2
Q ss_pred ccEEEEEEEecChhhHHHHHHHHHHHHHH-hCCeeeccccCCCcceEEEEeecCC-cCCCceeeEEEEEEEEEEEEECCC
Q 041275 88 KQKIRIKLRSYWVPLIEDSCKQIMDAART-TNAKTMGPVPLPTKKRIYCVLKSPH-VHKDARFHFEIRTHQRLIDILYPT 165 (187)
Q Consensus 88 ~~kIrIkLkS~d~~~Le~~~~~I~~~ak~-~~i~v~GPipLPTKk~r~TVLRSPH-V~KKSrEqFEiRtHKR~I~I~~~t 165 (187)
.++|+|+|+|||+..||.+|.+|.++|+. +|+.++||+||||++++||+||||| ++||+|||||+|+|||+|+|.+++
T Consensus 16 ~~kirI~LkS~d~~~Ld~~~~~i~~~ak~~~g~~v~GPipLPtk~~~~TvlRSPhgv~kksreqFE~RthKRlIdI~~~~ 95 (120)
T 2xzm_J 16 KVRVRITLTCKNLKSVEKATSEIVSRAKKTEQVEVKGPVRMPTKTLVITVRKSPCGEGSKTWDRFEMRIYKRIIDLTCNV 95 (120)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHHHHHHTSTTCEEEEEEECCCEEEEEEEECSSSSCSSCCEEEEEEEEEEEEEEEEECH
T ss_pred ceEEEEEEEECCHHHHHHHHHHHHHHHHHhcCCeeecCcCCCceeEEEEEEeCCCCCCCcchHheEEEEEEEEEEEeCCc
Confidence 47999999999999999999999999999 9999999999999999999999999 999999999999999999999988
Q ss_pred HHHHHHHHccCCCCCceEEEEC
Q 041275 166 AQTIDSLMQLDLPAGVDVEVKL 187 (187)
Q Consensus 166 ~~~i~~liq~~lP~GV~IeVkl 187 (187)
+ +++.|+++++|+||+|+|++
T Consensus 96 ~-tv~~l~~l~lp~GV~ieI~i 116 (120)
T 2xzm_J 96 P-DVKTITNFRIDPGVEIELTM 116 (120)
T ss_dssp H-HHHHHSCSCCCSSEEEEEEE
T ss_pred H-HHHHHHcCcCCCCCEEEEEE
Confidence 7 99999999999999999985
No 6
>2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.58.15.1 PDB: 1gix_M* 1hnw_J* 1hnx_J* 1hnz_J* 1hr0_J 1ibk_J* 1ibl_J* 1ibm_J 1jgo_M* 1jgp_M* 1jgq_M* 1ml5_M* 1xmo_J* 1xmq_J* 1xnq_J* 1xnr_J* 1yl4_M 2b64_J* 2b9m_J* 2b9o_J* ...
Probab=100.00 E-value=2.5e-36 Score=228.92 Aligned_cols=99 Identities=49% Similarity=0.881 Sum_probs=95.9
Q ss_pred cEEEEEEEecChhhHHHHHHHHHHHHHHhCCeeeccccCCCcceEEEEeecCCcCCCceeeEEEEEEEEEEEEECCCHHH
Q 041275 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQT 168 (187)
Q Consensus 89 ~kIrIkLkS~d~~~Le~~~~~I~~~ak~~~i~v~GPipLPTKk~r~TVLRSPHV~KKSrEqFEiRtHKR~I~I~~~t~~~ 168 (187)
++|+|+|+|||+..||.+|.+|.++|+.+|++++||++|||++++||+|||||+|||+|||||+|+|+|+|+|.+.++++
T Consensus 2 ~kirI~Lks~d~~~Ld~~~~~i~~~ak~~g~~v~gpi~LPtk~~~~tvlrSPhv~kksreqfE~r~hkR~I~i~~~~~~~ 81 (105)
T 2vqe_J 2 PKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRKT 81 (105)
T ss_dssp -CBCEEEEESCSSTTTTTTTHHHHTTTSSSCCCCCCCCCCCBCCEEECCSSSSSCTTCCCEEECCBEEECCCBSSCCTTH
T ss_pred cEEEEEEEEcCHHHHHHHHHHHHHHHHHhCCcccCccCCCCEEEEEEEEcCCCCCCChHHhEEeEEEEEEEEEeCCCHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred HHHHHccCCCCCceEEEEC
Q 041275 169 IDSLMQLDLPAGVDVEVKL 187 (187)
Q Consensus 169 i~~liq~~lP~GV~IeVkl 187 (187)
++.|+++++|+||+|+|++
T Consensus 82 ~~~l~~~~lp~GV~iei~~ 100 (105)
T 2vqe_J 82 IEQLMTLDLPTGVEIEIKT 100 (105)
T ss_dssp HHHSSSCCCCSSCEEEECC
T ss_pred HHHHHhCcCCCCCEEEEEE
Confidence 9999999999999999975
No 7
>3iz6_J 40S ribosomal protein S20 (S10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.3e-36 Score=233.97 Aligned_cols=99 Identities=32% Similarity=0.546 Sum_probs=95.7
Q ss_pred ccEEEEEEEecChhhHHHHHHHHHHHHHHhCCeeeccccCCCcceEEEEeecCCcC-CCceeeEEEEEEEEEEEEECCCH
Q 041275 88 KQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVH-KDARFHFEIRTHQRLIDILYPTA 166 (187)
Q Consensus 88 ~~kIrIkLkS~d~~~Le~~~~~I~~~ak~~~i~v~GPipLPTKk~r~TVLRSPHV~-KKSrEqFEiRtHKR~I~I~~~t~ 166 (187)
.++|+|+|+|||+..||++|.+|.++|+.+|++++||+||||++++||+||||||| ||+|||||+|+|||+|+|.++ +
T Consensus 26 ~~kIrI~LkS~d~~~Ld~~~~~I~~~ak~~g~~v~GPipLPTk~~r~TvlRSPhv~gKkSrEqFE~RtHKRlIdI~~~-~ 104 (128)
T 3iz6_J 26 QHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSS-A 104 (128)
T ss_dssp BCCCCCCEEEEESCHHHHHHHHHHHHHHHHHHSSCCCCCEEEEEEEEEEECCCCCSSCCSSCCEEEEEEEEEEECCSS-C
T ss_pred ccEEEEEEEECCHHHHHHHHHHHHHHHHHhCCceecccCCCCceEEEEEEecCCCCCCcchhheEEEEEEEEEEEeCc-H
Confidence 48899999999999999999999999999999999999999999999999999999 699999999999999999976 6
Q ss_pred HHHHHHHccCCCCCceEEEEC
Q 041275 167 QTIDSLMQLDLPAGVDVEVKL 187 (187)
Q Consensus 167 ~~i~~liq~~lP~GV~IeVkl 187 (187)
+++++|+++++|+||+|+|++
T Consensus 105 ~~v~~l~~l~lP~GV~veI~i 125 (128)
T 3iz6_J 105 DVVKQITSITIEPGVEVEVTI 125 (128)
T ss_dssp CHHHHHHHHHSCCCSSCEEEC
T ss_pred HHHHHHhCCcCCCCCEEEEEE
Confidence 899999999999999999986
No 8
>2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=5.8e-35 Score=226.70 Aligned_cols=99 Identities=32% Similarity=0.549 Sum_probs=93.2
Q ss_pred ccEEEEEEEecChhhHHHHHHHHHHHHHHhCCeeeccccCCCcceEEEEeecCCc-CCCceeeEEEEEEEEEEEEECCCH
Q 041275 88 KQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHV-HKDARFHFEIRTHQRLIDILYPTA 166 (187)
Q Consensus 88 ~~kIrIkLkS~d~~~Le~~~~~I~~~ak~~~i~v~GPipLPTKk~r~TVLRSPHV-~KKSrEqFEiRtHKR~I~I~~~t~ 166 (187)
.++|+|+|+|||+..||.+|.+|.++|+.+|+.++||+||||++++||+|||||| +||+|||||+|+|||+|+|.++ +
T Consensus 17 ~~kirI~LkS~d~~~Ld~~~~~i~~~ak~~g~~v~GPipLPtk~~r~TvlRSPhg~~KksreqFE~RthKRlIdI~~~-~ 95 (119)
T 2zkq_j 17 IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSP-S 95 (119)
T ss_dssp --CBCEEEEESSHHHHHHHHHHHHHHHHHHSCCCSCCCCCCCEEEEEEECSSSSCTTCTTCEEEEEEEBCCCCCBCSC-T
T ss_pred ceEEEEEEEECCHHHHHHHHHHHHHHHHHhCCcccCCcCCCCeeEEEEEEcCCCCCCCcchHheEeEEEEEEEEEeCh-H
Confidence 4789999999999999999999999999999999999999999999999999996 5999999999999999999987 5
Q ss_pred HHHHHHHccCCCCCceEEEEC
Q 041275 167 QTIDSLMQLDLPAGVDVEVKL 187 (187)
Q Consensus 167 ~~i~~liq~~lP~GV~IeVkl 187 (187)
+++++|+++++|+||+|+|++
T Consensus 96 ~~v~~l~~~~lp~GV~ieI~i 116 (119)
T 2zkq_j 96 EIVKQITSISIEPGVEVEVTI 116 (119)
T ss_dssp HHHHHHHHCCCCSSEEEEEC-
T ss_pred HHHHHHHcCcCCCCCEEEEEE
Confidence 899999999999999999975
No 9
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=99.91 E-value=1.3e-24 Score=160.47 Aligned_cols=84 Identities=48% Similarity=0.831 Sum_probs=79.0
Q ss_pred ccccCcccEEEEEEEecChhhHHHHHHHHHHHHHHhCCeeeccccCCCcceEEEEeecCCcCCCceeeEEEEEEEEEEEE
Q 041275 82 ADQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 161 (187)
Q Consensus 82 ~~~~~~~~kIrIkLkS~d~~~Le~~~~~I~~~ak~~~i~v~GPipLPTKk~r~TVLRSPHV~KKSrEqFEiRtHKR~I~I 161 (187)
+..|+ .+++||+|+|||++.||++|.+|.+.|+..|++++||+|||||+ |+|||+|+|
T Consensus 3 ~~~m~-~~kirI~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~GPipLPTk~---------------------R~HKRlIdi 60 (87)
T 3d3c_J 3 LGSMQ-NQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRS---------------------RTHLRLVDI 60 (87)
T ss_dssp CCCCS-SCEEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEET---------------------TEEEEEEEE
T ss_pred ccccc-ceEEEEEEEECCHHHHHHHHHHHHHHHHHhCCccCCCCCCCCCC---------------------ceEEEEEEE
Confidence 34453 57999999999999999999999999999999999999999999 999999999
Q ss_pred ECCCHHHHHHHHccCCCCCceEEEEC
Q 041275 162 LYPTAQTIDSLMQLDLPAGVDVEVKL 187 (187)
Q Consensus 162 ~~~t~~~i~~liq~~lP~GV~IeVkl 187 (187)
++++++++++|+++++|+||+|||++
T Consensus 61 ~~~~~~~v~~l~~l~lp~GV~ieI~i 86 (87)
T 3d3c_J 61 VEPTEKTVDDLMRLDLAAGVDVQISL 86 (87)
T ss_dssp ESCCHHHHHHHHHCCCCTTEEEEEEE
T ss_pred eCCCHHHHHHHHcCCCCCCceEEEEE
Confidence 99999999999999999999999985
No 10
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=99.89 E-value=2.6e-23 Score=152.39 Aligned_cols=79 Identities=51% Similarity=0.846 Sum_probs=76.9
Q ss_pred ccEEEEEEEecChhhHHHHHHHHHHHHHHhCCeeeccccCCCcceEEEEeecCCcCCCceeeEEEEEEEEEEEEECCCHH
Q 041275 88 KQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQ 167 (187)
Q Consensus 88 ~~kIrIkLkS~d~~~Le~~~~~I~~~ak~~~i~v~GPipLPTKk~r~TVLRSPHV~KKSrEqFEiRtHKR~I~I~~~t~~ 167 (187)
.++|||+|+|||+..||.+|++|.+.|+..|+.++||+||||++++| ||+|+|++++++
T Consensus 3 ~~kiRI~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~GPipLPTk~~~~---------------------KRlIdi~~~~~~ 61 (83)
T 3r2c_J 3 QEKIRIKLRAYDHRLLDQSVKQIIETVKRTGGVVKGPIPLPTRKSEF---------------------SRILDIIRFTPQ 61 (83)
T ss_dssp CCCEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEE---------------------EEEEEEEECCHH
T ss_pred CcEEEEEEEECCHHHHHHHHHHHHHHHHHhCCeeeCCcCCCCcceEE---------------------EEEEEEcCCCHH
Confidence 48899999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHccCCCCCceEEEEC
Q 041275 168 TIDSLMQLDLPAGVDVEVKL 187 (187)
Q Consensus 168 ~i~~liq~~lP~GV~IeVkl 187 (187)
++++|+++++|+||+|||++
T Consensus 62 ~v~~l~~l~lp~GV~vei~~ 81 (83)
T 3r2c_J 62 TIEALMEISLPAGVDVEVKM 81 (83)
T ss_dssp HHHHHHTCCCCTTCEEEEEC
T ss_pred HHHHHhCCCCCCCcEEEEEE
Confidence 99999999999999999986
No 11
>2ln3_A De novo designed protein OR135; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=42.50 E-value=37 Score=23.61 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=31.2
Q ss_pred EEEEEEEecChhhHHHHHHHHHHHHHHhCCeeecc
Q 041275 90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGP 124 (187)
Q Consensus 90 kIrIkLkS~d~~~Le~~~~~I~~~ak~~~i~v~GP 124 (187)
.+.+.+.|.|.+.++.+-....++|+..|+.+...
T Consensus 28 dlevefdstddkeieeferdmedlakktgvqiqkq 62 (83)
T 2ln3_A 28 DLEVEFDSTDDKEIEEFERDMEDLAKKTGVQIQKQ 62 (83)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred ceEEEecCCChHHHHHHHhHHHHHHHhhchhHHHH
Confidence 47788999999999999999999999999887653
No 12
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=25.63 E-value=30 Score=29.01 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=22.5
Q ss_pred cChhhHHHHHHHHHHHHHHhCCeeeccccCCCcc
Q 041275 98 YWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKK 131 (187)
Q Consensus 98 ~d~~~Le~~~~~I~~~ak~~~i~v~GPipLPTKk 131 (187)
.+...|+..|+.|.-.|+.+|+.+.|+.|-|.++
T Consensus 187 l~a~~Le~avK~IlGTArSMGi~V~g~~p~~~~~ 220 (224)
T 3bbo_K 187 LNCTTIESAMRIIAGTAANMGIDIDPPILVKKKK 220 (224)
T ss_dssp SCCSSHHHHHHHHHHHHTTTTEEEC---------
T ss_pred hcCcCHHHHHHHHHHHHHhCeeEEeCCCCChhhc
Confidence 3456799999999999999999999998877655
No 13
>3izc_n 60S ribosomal protein RPL38 (L38E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_n 3u5e_k 3u5i_k 4b6a_k
Probab=21.67 E-value=55 Score=23.15 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=37.6
Q ss_pred eEEEEeecCC--cCCCc--eeeEEEEEEEEEEEEECCCHHHHHHHHccCCCCCceE
Q 041275 132 RIYCVLKSPH--VHKDA--RFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDV 183 (187)
Q Consensus 132 ~r~TVLRSPH--V~KKS--rEqFEiRtHKR~I~I~~~t~~~i~~liq~~lP~GV~I 183 (187)
+.+.|-|+.. .+|+. .-.|..|..+-+..+...|.+-+++|. ..||+|+.+
T Consensus 21 ksv~IKknk~~~~~g~~~~~tKFKvRcsryLYTLvv~D~~KAeKL~-qSLPp~l~v 75 (78)
T 3izc_n 21 KTATVKINKKLNKAGKPFRQTKFKVRGSSSLYTLVINDAGKAKKLI-QSLPPTLKV 75 (78)
T ss_dssp EEEEEECCCCCCTTTSSCCCCEEEEEESSCCCCCSSCSHHHHHHHH-HSSSCCCCC
T ss_pred eeEEEEeccccccccccccceEEEEEeccceEEEEeCCHHHHHHHH-hcCCCCcee
Confidence 3466666663 33443 348999999998888888888888877 568999875
Done!