RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 041275
(187 letters)
>gnl|CDD|179076 PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.
Length = 102
Score = 171 bits (437), Expect = 4e-56
Identities = 60/100 (60%), Positives = 83/100 (83%)
Query: 88 KQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 147
KQKIRI+L+++ L++ S K+I++ A+ T A+ GP+PLPTKK + VL+SPHV+KD+R
Sbjct: 3 KQKIRIRLKAFDHRLLDQSAKKIVETAKRTGAQVRGPIPLPTKKERFTVLRSPHVNKDSR 62
Query: 148 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
FEIRTH+RLIDI+ PT +T+D+LM+LDLPAGVDVE+KL
Sbjct: 63 EQFEIRTHKRLIDIVDPTPKTVDALMKLDLPAGVDVEIKL 102
>gnl|CDD|177057 CHL00135, rps10, ribosomal protein S10; Validated.
Length = 101
Score = 160 bits (407), Expect = 1e-51
Identities = 63/99 (63%), Positives = 81/99 (81%)
Query: 85 MAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHK 144
+ KIRIKL+S+ L+ SCK+I+D A TNA +GP+PLPTK+RIYCVL+SPHV K
Sbjct: 3 IMTNAKIRIKLKSFNHELLNSSCKKIIDTASRTNATAVGPIPLPTKRRIYCVLRSPHVDK 62
Query: 145 DARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDV 183
D+R HFEIRTH+R+IDI YP+++TIDSLM+LDLP GVD+
Sbjct: 63 DSREHFEIRTHKRIIDIYYPSSETIDSLMKLDLPPGVDI 101
>gnl|CDD|130121 TIGR01049, rpsJ_bact, ribosomal protein S10, bacterial/organelle.
This model describes bacterial 30S ribosomal protein
S10. In species that have a transcription
antitermination complex, or N utilization substance,
with NusA, NusB, NusG, and NusE, this ribosomal protein
is responsible for NusE activity. Included in the family
are one member each from Saccharomyces cerevisiae and
Schizosaccharomyces pombe. These proteins lack an
N-terminal mitochondrial transit peptide but contain
additional sequence C-terminal to the ribosomal S10
protein region [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 99
Score = 158 bits (402), Expect = 7e-51
Identities = 62/99 (62%), Positives = 81/99 (81%)
Query: 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
QKIRIKL+SY L++ S K+I++ A+ T A+ GP+PLPTKK Y VL+SPHV+KD+R
Sbjct: 1 QKIRIKLKSYDHRLLDQSTKKIVETAKRTGAQVKGPIPLPTKKERYTVLRSPHVNKDSRE 60
Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
FEIRTH+RLIDI+ P +TID+LM+LDLPAGVD+E+KL
Sbjct: 61 QFEIRTHKRLIDIIDPNPKTIDALMKLDLPAGVDIEIKL 99
>gnl|CDD|201165 pfam00338, Ribosomal_S10, Ribosomal protein S10p/S20e. This family
includes small ribosomal subunit S10 from prokaryotes
and S20 from eukaryotes.
Length = 97
Score = 150 bits (381), Expect = 1e-47
Identities = 53/97 (54%), Positives = 70/97 (72%)
Query: 91 IRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHF 150
IRIKL+SY L+E K I++AA+ K GP+PLPTK+ VL+SPHV K +R F
Sbjct: 1 IRIKLKSYDHKLLESYVKFIVEAAKRLGIKVSGPIPLPTKRLRVTVLRSPHVDKKSREQF 60
Query: 151 EIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
E+RTH+RLIDI T +T+D L+++DLP GVDVE+KL
Sbjct: 61 EMRTHKRLIDIYDATPETVDQLLRIDLPEGVDVEIKL 97
>gnl|CDD|223129 COG0051, RpsJ, Ribosomal protein S10 [Translation, ribosomal
structure and biogenesis].
Length = 104
Score = 149 bits (379), Expect = 3e-47
Identities = 57/101 (56%), Positives = 79/101 (78%)
Query: 87 PKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDA 146
KQKIRI+L+S+ L++ C++I++ A+ T A GP+PLPTK+ VL+SPH KD+
Sbjct: 2 KKQKIRIRLKSFDHRLLDQVCREIVETAKRTGADVKGPIPLPTKRERVTVLRSPHGEKDS 61
Query: 147 RFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
R FE+RTH+RLIDI+ PT +T+D+LM+LDLPAGVDVE+KL
Sbjct: 62 REQFEMRTHKRLIDIVDPTPKTVDALMRLDLPAGVDVEIKL 102
>gnl|CDD|130118 TIGR01046, S10_Arc_S20_Euk, ribosomal protein
S10(archaeal)/S20(eukaryotic). This model describes the
archaeal ribosomal protein and its equivalents in
eukaryotes [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 99
Score = 74.4 bits (183), Expect = 6e-18
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
K RIKL S V +E C QI A T + GPVPLPTK+ KSP +
Sbjct: 1 HKARIKLTSTNVRSLEKVCAQIKRIAEKTGVRMSGPVPLPTKRLRVPTRKSPDGEGSKTW 60
Query: 149 -HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
+E+R H+RLIDI + + +M++ +P V++E+ L
Sbjct: 61 DRWEMRIHKRLIDIEADE-RALRQIMRISVPEDVEIEITL 99
>gnl|CDD|183392 PRK12271, rps10p, 30S ribosomal protein S10P; Reviewed.
Length = 102
Score = 71.5 bits (176), Expect = 1e-16
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 89 QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
QK RI+L S +++ C QI + A T GP+PLPTK+ + KSP A +
Sbjct: 2 QKARIRLSSTNPEDLDEVCDQIKEIAEKTGVDMSGPIPLPTKRLVVPTRKSPDGEGTATW 61
Query: 149 -HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
H+E+R H+RLIDI + + LM++ +P V +E++L
Sbjct: 62 DHWEMRIHKRLIDI-DADERALRQLMRIRVPEDVQIEIEL 100
>gnl|CDD|173336 PTZ00039, PTZ00039, 40S ribosomal protein S20; Provisional.
Length = 115
Score = 59.1 bits (143), Expect = 8e-12
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 83 DQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHV 142
++ KIRI L S + IE C I+ A+ N K GPV +P K KSP
Sbjct: 11 EEQNRLHKIRITLTSKNLKSIEKVCADIITGAKEKNLKVTGPVRMPVKTLRITTRKSPCG 70
Query: 143 HKDARF-HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEV 185
+ FE+R ++R+ID LY ++ + + +++ GV+VEV
Sbjct: 71 EGTNTWDRFEMRIYKRVID-LYSSSDVVTQITSINIDPGVEVEV 113
>gnl|CDD|215283 PLN02518, PLN02518, pheophorbide a oxygenase.
Length = 539
Score = 34.5 bits (79), Expect = 0.022
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 10/107 (9%)
Query: 1 MATFSLSAAISPSLTVPISSNSKCPVFSVSFPSKNYAGNTLKLEPLSTTNTRVFSAPETL 60
MA A S +LT SS K F + + + ++ T RV +AP ++
Sbjct: 1 MAVLLGIACNSLTLT---SSTPKSTPFFIPARTIPFVSSSRPRRGKIFTPLRV-AAPPSV 56
Query: 61 AGSESSAVEAEVPETLSVSSGADQMAPKQKIRIKLRSYWVP--LIED 105
+ + + + G + K R +W P L+ED
Sbjct: 57 PSEAALQQDEGEEQRVEQELGQESSDSK----FSWRDHWYPVSLVED 99
>gnl|CDD|140324 PTZ00303, PTZ00303, phosphatidylinositol kinase; Provisional.
Length = 1374
Score = 30.1 bits (67), Expect = 0.81
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 113 AARTTNAKTMGPVPLP-----TKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPT 165
AART++ T P+PLP T+ ++ V +HKDA + R Q+L++ + PT
Sbjct: 758 AARTSSPPTTAPLPLPMLSDVTEGQVVTVWLLDMLHKDALVPAQRRRFQQLLERVIPT 815
>gnl|CDD|222610 pfam14228, MOR2-PAG1_mid, Cell morphogenesis central region. This
family is the conserved central region of proteins that
are involved in cell morphogenesis.
Length = 1120
Score = 30.0 bits (67), Expect = 0.92
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 95 LRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKS--PHVHKDARFHFEI 152
LR +++ IE++ +QI+ + N + + P+ + + VL+S P F++
Sbjct: 288 LRLHFLKFIEETVRQILVGP-SENFQEIQPL----RYALASVLRSLAPEFVDAKSERFDL 342
Query: 153 RTHQRLIDIL 162
R +RL D+L
Sbjct: 343 RDRKRLFDLL 352
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.128 0.365
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,940,119
Number of extensions: 774493
Number of successful extensions: 561
Number of sequences better than 10.0: 1
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 16
Length of query: 187
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 96
Effective length of database: 6,901,388
Effective search space: 662533248
Effective search space used: 662533248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.7 bits)