RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 041275
         (187 letters)



>d2uubj1 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus
           thermophilus [TaxId: 274]}
          Length = 98

 Score =  145 bits (368), Expect = 2e-46
 Identities = 49/97 (50%), Positives = 72/97 (74%)

Query: 90  KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 149
           KIRIKLR +    ++ S ++I++AAR + A+  GP+PLPT+ R + V++ P  HKD+R H
Sbjct: 1   KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSREH 60

Query: 150 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVK 186
           FE+RTH RL+DI+ P  +TI+ LM LDLP GV++E+K
Sbjct: 61  FELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEIK 97


>d2qalj1 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escherichia coli
           [TaxId: 562]}
          Length = 98

 Score =  144 bits (364), Expect = 8e-46
 Identities = 51/98 (52%), Positives = 76/98 (77%)

Query: 90  KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 149
           +IRI+L+++   LI+ +  +I++ A+ T A+  GP+PLPT+K  + VL SPHV+KDAR  
Sbjct: 1   RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQ 60

Query: 150 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
           +EIRTH RL+DI+ PT +T+D+LM+LDL AGVDV++ L
Sbjct: 61  YEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL 98


>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic
           enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
          Length = 294

 Score = 30.9 bits (70), Expect = 0.076
 Identities = 17/60 (28%), Positives = 24/60 (40%)

Query: 111 MDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTID 170
           MD       K   P  +  KKR   +LK P ++K   F    R +  L  +L P   T +
Sbjct: 16  MDEKEMALYKLYRPERVTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQE 75


>d1cb8a2 b.24.1.1 (A:600-700) Chondroitinase AC {Pedobacter
           heparinus (Flavobacterium heparinum) [TaxId: 984]}
          Length = 101

 Score = 24.8 bits (54), Expect = 3.9
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 13  SLTVPISSNSKCPVFSVSFPSKNYAGNTLKLE 44
            L++      K     + FP + +AG T++L+
Sbjct: 70  VLSIRDLKTGKTNRVKIDFPQQEFAGATVELK 101


>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Human (Homo sapiens) [TaxId: 9606]}
          Length = 259

 Score = 25.5 bits (56), Expect = 3.9
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 130 KKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTID 170
           K++   ++ +P  +K   F  + R    L  +L P  +T D
Sbjct: 2   KEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQD 42


>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
          Length = 257

 Score = 25.1 bits (55), Expect = 6.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 131 KRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTID 170
           K+ Y VL+ PH++K   F  E R    +  +L P     D
Sbjct: 1   KKGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQD 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0703    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 623,400
Number of extensions: 25752
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 8
Length of query: 187
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,309,196
Effective search space: 140083972
Effective search space used: 140083972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.1 bits)