BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041277
(1133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/1144 (33%), Positives = 618/1144 (54%), Gaps = 44/1144 (3%)
Query: 20 SFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPID------ 73
S ++F +A +D M++G + AI G + PL++ + ++ V NV +
Sbjct: 34 SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSE 93
Query: 74 -----VFTHNINKNTVHLLY---LALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLR 125
+F + T + Y + G + +++ W RQ ++R ++ A++
Sbjct: 94 ADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMN 153
Query: 126 QDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLA 185
Q++G+FD+H E+ T +++D I + I +K+ F + FFG +++ F W+L
Sbjct: 154 QEIGWFDVH--DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLT 211
Query: 186 IVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTIN 245
+V +L + ++ + L S K Y KAG +AE+ +++IRTV AF G+ K +
Sbjct: 212 LVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271
Query: 246 EFSSALQGSVXXXXXXXXXXXXXXXSNGVTFGI----WSFLCYYGSRMVMYHGAQGGTVF 301
+++ L+ + S G F + ++ +YG+ +V+ G V
Sbjct: 272 RYNNNLEEA---KRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVL 328
Query: 302 XXXXXXXXXXXXXXXXXPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEV 361
PN++ F+ A A + ++I P IDS S G +N+ G +
Sbjct: 329 TVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNL 388
Query: 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII 421
EFK + F+YPSR E I K L + +G+TVALVG SG GKST + L+QR Y PL G +
Sbjct: 389 EFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Query: 422 LDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNF 481
+DG I + +++LR +G+VSQEP LFAT+I ENI +G+ED +M+E+ +A K +NA++F
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDF 508
Query: 482 IRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEA 541
I +LP Q+DT VGERG Q+SGG P+ILLLDEATSALD+ESE VVQ A
Sbjct: 509 IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA 568
Query: 542 LDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTT 601
LDKA GRTTI+IAHRLST+RNADVIA G ++E G+HDEL++ E G+Y LV QT
Sbjct: 569 LDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR-EKGIYFKLVMTQTA 627
Query: 602 TPDDNNNATMHSLASKSS----NMDMXXXXXXXXXXXXXXXXXXXFA---QGRGASQSNE 654
N + + A KS N+DM Q R S
Sbjct: 628 ----GNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEA 683
Query: 655 EDIKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDE 714
D + +P SF R++ LN+ EW +G A + G +QP ++ ++ V+ E
Sbjct: 684 LD-EDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPE 742
Query: 715 IKKKTS-IYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQ 773
+++ S +++ FL L + + + +Q + F GE LTKR+R + +L +V WFD
Sbjct: 743 TQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDD 802
Query: 774 DENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQP 833
+N++GA+ +RLA DA V+ G R A++ Q I+ + + L W+L L+++A+ P
Sbjct: 803 PKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVP 862
Query: 834 LVIICFYARRVLLKSMSNKAIKAQAE---SSKLAAEAVSNLRTITAFSSQHRILKMLEKA 890
++ I A V +K +S +A+K + E S K+A EA+ N RT+ + + + + M ++
Sbjct: 863 IIAI---AGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQS 919
Query: 891 QQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVS 950
Q P R +++++ GI +F+Q++ ++A F +G L+ ++ + + F +V
Sbjct: 920 LQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVF 979
Query: 951 TGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFA 1010
+ S D AK + + + ++++ +I+ +G +P + GN++ V F
Sbjct: 980 GAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFN 1039
Query: 1011 YPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS 1070
YP RP + + +G S++++ G++ ALVG SG GKST++ L+ERFYDP+ G V +D ++I+
Sbjct: 1040 YPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ 1099
Query: 1071 YHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDE-IDESEIVEAAKAANAHDFIAGLNE 1129
+++ LR + +VSQEP LF +I ENIAYG + + EIV AAK AN H FI L +
Sbjct: 1100 LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPD 1159
Query: 1130 GYDT 1133
Y+T
Sbjct: 1160 KYNT 1163
Score = 345 bits (886), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 200/539 (37%), Positives = 297/539 (55%), Gaps = 26/539 (4%)
Query: 76 THNINKNTVHLLYLALG--SWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDL 133
T N N LL+L LG S++ FL+G+ + + GE R+R K++LRQDV +FD
Sbjct: 743 TQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDD 802
Query: 134 HVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVV 193
+T + T ++ND+ ++ A +L N + +++ + W+L ++ V
Sbjct: 803 PKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVP 862
Query: 194 LLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQG 253
++ I G++ + L A K + E +G IA +AI + RTV + E K ++ +LQ
Sbjct: 863 IIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQI 922
Query: 254 SVXXXXXXXXXXXXXXXSNGVTFGIWSFLCYYGSRMVMYHGAQGGT-----------VFX 302
G+TF + Y+ GA T VF
Sbjct: 923 PYRNAMKKAHVF-------GITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFS 975
Query: 303 XXXXXXXXXXXXXXXXPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVE 362
P+ +++A + I+ +I++ P+IDS S +G + G V+
Sbjct: 976 AIVFGAMAVGQVSSFAPD---YAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQ 1032
Query: 363 FKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL 422
F V F YP+RP + + L + G+T+ALVG SG GKSTV+ LL+RFY P+ G + L
Sbjct: 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
Query: 423 DGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKED--ASMEEVIEAAKASNAHN 480
DG I +L ++WLR+Q+G+VSQEP LF SI ENI +G S EE++ AAK +N H
Sbjct: 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQ 1152
Query: 481 FIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQE 540
FI LP +Y+T+VG++G Q+SGG P ILLLDEATSALD+ESE+VVQE
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212
Query: 541 ALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
ALDKA GRT I+IAHRLSTI+NAD+I V+Q+G+V E G+H +L+ A+ G+Y S+V +Q
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL-AQKGIYFSMVSVQ 1270
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/1144 (33%), Positives = 618/1144 (54%), Gaps = 44/1144 (3%)
Query: 20 SFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPID------ 73
S ++F +A +D M++G + AI G + PL++ + ++ V NV +
Sbjct: 34 SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSE 93
Query: 74 -----VFTHNINKNTVHLLY---LALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLR 125
+F + T + Y + G + +++ W RQ ++R ++ A++
Sbjct: 94 ADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMN 153
Query: 126 QDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLA 185
Q++G+FD+H E+ T +++D I + I +K+ F + FFG +++ F W+L
Sbjct: 154 QEIGWFDVH--DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLT 211
Query: 186 IVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTIN 245
+V +L + ++ + L S K Y KAG +AE+ +++IRTV AF G+ K +
Sbjct: 212 LVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271
Query: 246 EFSSALQGSVXXXXXXXXXXXXXXXSNGVTFGI----WSFLCYYGSRMVMYHGAQGGTVF 301
+++ L+ + S G F + ++ +YG+ +V+ G V
Sbjct: 272 RYNNNLEEA---KRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVL 328
Query: 302 XXXXXXXXXXXXXXXXXPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEV 361
PN++ F+ A A + ++I P IDS S G +N+ G +
Sbjct: 329 TVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNL 388
Query: 362 EFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEII 421
EFK + F+YPSR E I K L + +G+TVALVG SG GKST + L+QR Y PL G +
Sbjct: 389 EFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Query: 422 LDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNF 481
+DG I + +++LR +G+VSQEP LFAT+I ENI +G+ED +M+E+ +A K +NA++F
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDF 508
Query: 482 IRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEA 541
I +LP Q+DT VGERG Q+SGG P+ILLLDEATSALD+ESE VVQ A
Sbjct: 509 IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA 568
Query: 542 LDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTT 601
LDKA GRTTI+IAHRLST+RNADVIA G ++E G+HDEL++ E G+Y LV QT
Sbjct: 569 LDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR-EKGIYFKLVMTQTA 627
Query: 602 TPDDNNNATMHSLASKSS----NMDMXXXXXXXXXXXXXXXXXXXFA---QGRGASQSNE 654
N + + A KS N+DM Q R S
Sbjct: 628 ----GNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEA 683
Query: 655 EDIKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDE 714
D + +P SF R++ LN+ EW +G A + G +QP ++ ++ V+ E
Sbjct: 684 LD-EDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPE 742
Query: 715 IKKKTS-IYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQ 773
+++ S +++ FL L + + + +Q + F GE LTKR+R + +L +V WFD
Sbjct: 743 TQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDD 802
Query: 774 DENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQP 833
+N++GA+ +RLA DA V+ G R A++ Q I+ + + L W+L L+++A+ P
Sbjct: 803 PKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVP 862
Query: 834 LVIICFYARRVLLKSMSNKAIKAQAE---SSKLAAEAVSNLRTITAFSSQHRILKMLEKA 890
++ I A V +K +S +A+K + E S K+A EA+ N RT+ + + + + M ++
Sbjct: 863 IIAI---AGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQS 919
Query: 891 QQGPRRESIRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVS 950
Q P R +++++ GI +F+Q++ ++A F +G L+ ++ + + F +V
Sbjct: 920 LQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVF 979
Query: 951 TGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFA 1010
+ S D AK + + + ++++ +I+ +G +P + GN++ V F
Sbjct: 980 GAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFN 1039
Query: 1011 YPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRS 1070
YP RP + + +G S++++ G++ ALVG SG GKST++ L+ERFYDP+ G V +D ++I+
Sbjct: 1040 YPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ 1099
Query: 1071 YHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDE-IDESEIVEAAKAANAHDFIAGLNE 1129
+++ LR + +VSQEP LF +I ENIAYG + + EIV AAK AN H FI L +
Sbjct: 1100 LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPD 1159
Query: 1130 GYDT 1133
Y+T
Sbjct: 1160 KYNT 1163
Score = 345 bits (885), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 200/539 (37%), Positives = 297/539 (55%), Gaps = 26/539 (4%)
Query: 76 THNINKNTVHLLYLALG--SWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDL 133
T N N LL+L LG S++ FL+G+ + + GE R+R K++LRQDV +FD
Sbjct: 743 TQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDD 802
Query: 134 HVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVV 193
+T + T ++ND+ ++ A +L N + +++ + W+L ++ V
Sbjct: 803 PKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVP 862
Query: 194 LLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQG 253
++ I G++ + L A K + E +G IA +AI + RTV + E K ++ +LQ
Sbjct: 863 IIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQI 922
Query: 254 SVXXXXXXXXXXXXXXXSNGVTFGIWSFLCYYGSRMVMYHGAQGGT-----------VFX 302
G+TF + Y+ GA T VF
Sbjct: 923 PYRNAMKKAHVF-------GITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFS 975
Query: 303 XXXXXXXXXXXXXXXXPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVE 362
P+ +++A + I+ +I++ P+IDS S +G + G V+
Sbjct: 976 AIVFGAMAVGQVSSFAPD---YAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQ 1032
Query: 363 FKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL 422
F V F YP+RP + + L + G+T+ALVG SG GKSTV+ LL+RFY P+ G + L
Sbjct: 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092
Query: 423 DGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKED--ASMEEVIEAAKASNAHN 480
DG I +L ++WLR+Q+G+VSQEP LF SI ENI +G S EE++ AAK +N H
Sbjct: 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQ 1152
Query: 481 FIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQE 540
FI LP +Y+T+VG++G Q+SGG P ILLLDEATSALD+ESE+VVQE
Sbjct: 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE 1212
Query: 541 ALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
ALDKA GRT I+IAHRLSTI+NAD+I V+Q+G+V E G+H +L+ A+ G+Y S+V +Q
Sbjct: 1213 ALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL-AQKGIYFSMVSVQ 1270
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 540 bits (1391), Expect = e-153, Method: Compositional matrix adjust.
Identities = 362/1161 (31%), Positives = 584/1161 (50%), Gaps = 59/1161 (5%)
Query: 20 SFRSIFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSK----FMN-----NIGGVSNV 70
S ++ + ++ L+ +G + A+ G PL+ L K F+N N G + +
Sbjct: 61 SIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFL 120
Query: 71 PIDV------FTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVL 124
P F H++ + +G W A + C+ E+ R+R ++K++L
Sbjct: 121 PTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSIL 180
Query: 125 RQDVGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRL 184
RQ++ +FD + + T + T + ++ +++ +K+ S F ++VAF W+L
Sbjct: 181 RQEISWFDTNHSGT--LATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQL 238
Query: 185 AIVGFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTI 244
+V + + G +++ + A + Y KAG + E+ ISSIRTV + G +
Sbjct: 239 TLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYEL 298
Query: 245 NEFSSALQ----GSVXXXXXXXXXXXXXXXSNGVTFGIWSFLCYYGSRMVMYHGAQGGTV 300
+S+A++ V SN ++F + +F Y G V G +
Sbjct: 299 ERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFAL-AF--YIGVGWVHDGSLNFGDM 355
Query: 301 FXXXXXXXXXXXXXXXXXPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGE 360
P L A A I E++ R P IDS S G + G+
Sbjct: 356 LTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGD 415
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+ + V F YPSRP+ I + L + AG+TVALVG SG GKST+I+LL R+Y L G+I
Sbjct: 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN 480
+DGV + + L++LR + +VSQEPALF +I+ENI GKE + EE++ A K +NA
Sbjct: 476 TIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEK 535
Query: 481 FIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQE 540
FI+ LP Y+T VG+RG Q+SGG P+ILLLDEATSALD+ESE +VQ+
Sbjct: 536 FIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ 595
Query: 541 ALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQT 600
ALDKA GRTTIIIAHRLSTIRNAD+I ++GQV+E G H L+ A+ GLY LV QT
Sbjct: 596 ALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALM-AQQGLYYDLVTAQT 654
Query: 601 TTPDDNNNAT-----MHSLASKSSNMDMXXXXXXXXXXXXXXXXXXXFAQGRGAS--QSN 653
T ++ A +S+A ++S +
Sbjct: 655 FTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEK 714
Query: 654 EEDIKKLPVPSFRRLVALNA--------------PEWKQATLGCVGATLFGAVQPIYAFA 699
EE I K + ++ + N P +G AT+ G + P Y+
Sbjct: 715 EERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVF 774
Query: 700 MGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERM 759
S ++V F + + + +A FL LA + + + + E LT+ +R ++
Sbjct: 775 FTSFMNV-FAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKL 833
Query: 760 LSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLF 819
+L+ +G+FD +N+SG I +RLA D +R+ + R + ++ T+ ++ + F
Sbjct: 834 FRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFF 893
Query: 820 IAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSS 879
W++AL++IA+ P+V Y R + K+ A+S K+A EA+ N+RT+ A +
Sbjct: 894 YGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAR 953
Query: 880 QHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQS----LASCTWALDFWYGGRLIADGY 935
+ + + P +E+I++++ G+ + S L +C + + +I D
Sbjct: 954 EDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGL---ALIITDPP 1010
Query: 936 ISS--KALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGH 993
+ L + I +ST + A S + AK + A G +F ++ + +KI+ G
Sbjct: 1011 TMQPMRVLRVMYAITISTS-TLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGE 1069
Query: 994 QPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERF 1053
+ +++ G + +NV FAYP RP++ I +G S +E G++ ALVG SG GKST++ L+ERF
Sbjct: 1070 K-KKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128
Query: 1054 YDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS-DEIDESEIV 1112
YD L G++ ID +I++ + R IA+VSQEPTLF +I ENI YG + +++
Sbjct: 1129 YDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVE 1188
Query: 1113 EAAKAANAHDFIAGLNEGYDT 1133
EAA+ AN H+FIA L EG++T
Sbjct: 1189 EAARLANIHNFIAELPEGFET 1209
Score = 304 bits (779), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 203/590 (34%), Positives = 296/590 (50%), Gaps = 26/590 (4%)
Query: 24 IFMHADGVDMFLMVLGYIGAIGDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNT 83
I HA + L + IG GF P + FMN G P D + +
Sbjct: 743 ILYHARPHALSLFIGMSTATIG-GFIYPTYSVFFTSFMNVFAGN---PADFLSQG-HFWA 797
Query: 84 VHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVIT 143
+ L LA + FL + E +R + + VL Q +G+FD ++ ++ T
Sbjct: 798 LMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKIST 857
Query: 144 SVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYG 203
++ D ++ AI + + +AF W++A++ + ++ + G
Sbjct: 858 RLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRG 917
Query: 204 RTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSALQGSVXXXXXXXX 263
R K E+ +G IA +AI ++RTV A E F L
Sbjct: 918 RRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLD-------IPHK 970
Query: 264 XXXXXXXSNGVTFGIWSFLCYYGSRMVMYHG----------AQGGTVFXXXXXXXXXXXX 313
G+++G S + Y + G Q V
Sbjct: 971 EAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTST 1030
Query: 314 XXXXXPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSR 373
+++A AG I M++++ KIDS S+ GE + + G+V FK V+FAYP R
Sbjct: 1031 LGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGE-KKKLYGKVIFKNVRFAYPER 1089
Query: 374 PESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK 433
PE I K ++ G+T+ALVG SG GKSTV+ALL+RFY LGGEI +DG I L +
Sbjct: 1090 PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPE 1149
Query: 434 WLRSQMGLVSQEPALFATSIKENILFGKEDAS--MEEVIEAAKASNAHNFIRQLPQQYDT 491
RSQ+ +VSQEP LF SI ENI++G + +S M +V EAA+ +N HNFI +LP+ ++T
Sbjct: 1150 HTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFET 1209
Query: 492 QVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTT 551
+VG+RG Q+SGG P+ILLLDEATSALD+ESE+VVQEALD+A GRT
Sbjct: 1210 RVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTC 1269
Query: 552 IIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTT 601
I+IAHRL+T+ NAD IAVV +G ++E G+H +L+ +E G Y L + Q T
Sbjct: 1270 IVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLM-SEKGAYYKLTQKQMT 1318
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 315 bits (807), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 197/541 (36%), Positives = 300/541 (55%), Gaps = 15/541 (2%)
Query: 68 SNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQD 127
+N +D ++ N+ + + L + L A + Y +G+R R+R ++LRQ+
Sbjct: 51 TNPTVD-YSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQE 109
Query: 128 VGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIV 187
V +FD T T E+I +S+D+ ++ +++E L + + + + F + LA
Sbjct: 110 VAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATF 167
Query: 188 GFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEF 247
V + I ++YGR L L + +D +A +AE+ I ++RTV AF E I ++
Sbjct: 168 VLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKY 227
Query: 248 SSALQGSVXXXXXXXXXXXXXXXSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFXXXXXX 307
+S + + + G++ + Y ++M G+ TV
Sbjct: 228 ASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLM--GSAHMTVGELSSFL 285
Query: 308 XXXXXXXXXXXPNLKYFSEAM---AAGERIMEMIKRVPKIDSDSMEGEIL--ENVLGEVE 362
++SE M AG R+ E+++R PK+ + EG IL ++ G +E
Sbjct: 286 MYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN--EGVILNEKSFQGALE 343
Query: 363 FKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL 422
FK V FAYP+RPE IF+DF L+IP+G ALVG SGSGKSTV++LL R Y P G I L
Sbjct: 344 FKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISL 403
Query: 423 DGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDAS---MEEVIEAAKASNAH 479
DG I +L WLRS++G VSQEP LF+ SI ENI +G +D S EE+ A+ +NA
Sbjct: 404 DGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAV 463
Query: 480 NFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQ 539
FIR PQ ++T VGE+GV +SGG P+ILLLDEATSALD+E+E +VQ
Sbjct: 464 AFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQ 523
Query: 540 EALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
EALD+ + GRT ++IAHRLSTI+NA+++AV+ G++ E G H+EL+ +G+Y L+ Q
Sbjct: 524 EALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 583
Query: 600 T 600
+
Sbjct: 584 S 584
Score = 207 bits (526), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 147/484 (30%), Positives = 244/484 (50%), Gaps = 24/484 (4%)
Query: 662 VPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSI 721
+P R+L+ L PE ++ T+ + F +G +I V + + + ++
Sbjct: 4 LPEARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIY--TNPTVDYSDNL 61
Query: 722 YAFCFLGL-AVFTL--VINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSS 778
C LGL AVF N I+ Y G+ + R+R + S IL EV +FD+ +
Sbjct: 62 TRLC-LGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTR--T 118
Query: 779 GAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLV--I 836
G + +RL+ D ++ V + + ++ + ++ +M F++ LA +++V P V I
Sbjct: 119 GELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSII 178
Query: 837 ICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQ----HRILKMLEKAQQ 892
Y R L+ ++ + A++++LA E + N+RT+ AF + + ++ Q
Sbjct: 179 AVIYGR--YLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQ 236
Query: 893 GPRRESI-RQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVST 951
R+E+ R ++ GL+ + + S + GG L+ +++ L M
Sbjct: 237 LARKEAFARAGFFGATGLSGNLIVLSV-----LYKGGLLMGSAHMTVGELSSFLMYAFWV 291
Query: 952 GRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAY 1011
G I S +++ KG A G ++ +++R K+ + + G +E +NVHFAY
Sbjct: 292 GISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAY 351
Query: 1012 PARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY 1071
PARP+V IF+ FS+ I +G TALVG SGSGKST++ L+ R YDP G + +D DIR
Sbjct: 352 PARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQL 411
Query: 1072 HLRSLRRHIALVSQEPTLFAGTIRENIAYGASD--EIDESEIVEAAKAANAHDFIAGLNE 1129
+ LR I VSQEP LF+ +I ENIAYGA D + EI A+ ANA FI +
Sbjct: 412 NPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQ 471
Query: 1130 GYDT 1133
G++T
Sbjct: 472 GFNT 475
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 312 bits (800), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 196/541 (36%), Positives = 299/541 (55%), Gaps = 15/541 (2%)
Query: 68 SNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCWTRTGERQATRMRARYLKAVLRQD 127
+N +D ++ N+ + + L + L A + Y +G+R R+R ++LRQ+
Sbjct: 82 TNPTVD-YSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQE 140
Query: 128 VGYFDLHVTSTAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLAIV 187
V +FD T T E+I +S+D+ ++ +++E L + + + + F + LA
Sbjct: 141 VAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATF 198
Query: 188 GFPFVVLLVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEF 247
V + I ++YGR L L + +D +A +AE+ I ++RTV AF E I ++
Sbjct: 199 VLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKY 258
Query: 248 SSALQGSVXXXXXXXXXXXXXXXSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFXXXXXX 307
+S + + + G++ + Y ++M G+ TV
Sbjct: 259 ASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLM--GSAHMTVGELSSFL 316
Query: 308 XXXXXXXXXXXPNLKYFSEAM---AAGERIMEMIKRVPKIDSDSMEGEIL--ENVLGEVE 362
++SE M AG R+ E+++R PK+ + EG IL ++ G +E
Sbjct: 317 MYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN--EGVILNEKSFQGALE 374
Query: 363 FKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIIL 422
FK V FAYP+RPE IF+DF L+IP+G ALVG SGSGKSTV++LL R Y P G I L
Sbjct: 375 FKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISL 434
Query: 423 DGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDAS---MEEVIEAAKASNAH 479
DG I +L WLRS++G VSQEP LF+ SI ENI +G +D S EE+ A+ +NA
Sbjct: 435 DGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAV 494
Query: 480 NFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQ 539
FIR PQ ++T VGE+GV +SGG P+ILLLDEATSALD+E+E +VQ
Sbjct: 495 AFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQ 554
Query: 540 EALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
EALD+ + GRT ++IAH LSTI+NA+++AV+ G++ E G H+EL+ +G+Y L+ Q
Sbjct: 555 EALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 614
Query: 600 T 600
+
Sbjct: 615 S 615
Score = 206 bits (523), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 147/484 (30%), Positives = 244/484 (50%), Gaps = 24/484 (4%)
Query: 662 VPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKKTSI 721
+P R+L+ L PE ++ T+ + F +G +I V + + + ++
Sbjct: 35 LPEARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIY--TNPTVDYSDNL 92
Query: 722 YAFCFLGL-AVFTL--VINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSS 778
C LGL AVF N I+ Y G+ + R+R + S IL EV +FD+ +
Sbjct: 93 TRLC-LGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTR--T 149
Query: 779 GAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLV--I 836
G + +RL+ D ++ V + + ++ + ++ +M F++ LA +++V P V I
Sbjct: 150 GELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSII 209
Query: 837 ICFYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQ----HRILKMLEKAQQ 892
Y R L+ ++ + A++++LA E + N+RT+ AF + + ++ Q
Sbjct: 210 AVIYGR--YLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQ 267
Query: 893 GPRRESI-RQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVST 951
R+E+ R ++ GL+ + + S + GG L+ +++ L M
Sbjct: 268 LARKEAFARAGFFGATGLSGNLIVLSV-----LYKGGLLMGSAHMTVGELSSFLMYAFWV 322
Query: 952 GRVIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAY 1011
G I S +++ KG A G ++ +++R K+ + + G +E +NVHFAY
Sbjct: 323 GISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAY 382
Query: 1012 PARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY 1071
PARP+V IF+ FS+ I +G TALVG SGSGKST++ L+ R YDP G + +D DIR
Sbjct: 383 PARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQL 442
Query: 1072 HLRSLRRHIALVSQEPTLFAGTIRENIAYGASD--EIDESEIVEAAKAANAHDFIAGLNE 1129
+ LR I VSQEP LF+ +I ENIAYGA D + EI A+ ANA FI +
Sbjct: 443 NPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQ 502
Query: 1130 GYDT 1133
G++T
Sbjct: 503 GFNT 506
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 239 bits (610), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 167/475 (35%), Positives = 242/475 (50%), Gaps = 30/475 (6%)
Query: 140 EVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRL---AIVGFPFVVLLV 196
+VI+ V ND +D I L N ++ + F + +L A+ FPF +L V
Sbjct: 119 QVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTV 178
Query: 197 IPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGES--------KTINEFS 248
+ +GR L L R+ + + + I V +F E K N +
Sbjct: 179 Y--VFFGR-LRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLT 235
Query: 249 SALQGSVXXXXXXXXXXXXXXXSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFXXXXXXX 308
AL+ + + G+ ++L GS V GT+
Sbjct: 236 RALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITV-------GTLAAFVGYLE 288
Query: 309 XXXXXXXXXXPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEG---EILENVLGEVEFKC 365
+ +++ A+ +R+ ++I D D G + +E G ++
Sbjct: 289 LLFGPLRRLVASFTTLTQSFASMDRVFQLIDE----DYDIKNGVGAQPIEIKQGRIDIDH 344
Query: 366 VQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425
V F Y E+ I KD L+I G+TVA VG SG GKST+I L+ RFY G+I++DG
Sbjct: 345 VSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH 403
Query: 426 SIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQL 485
+I LR+Q+GLV Q+ LF+ ++KENIL G+ A+ EEV+EAAK +NAH+FI L
Sbjct: 404 NIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNL 463
Query: 486 PQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKA 545
PQ YDT+VGERGV++SGG P IL+LDEATSALD ESE ++QEALD
Sbjct: 464 PQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL 523
Query: 546 VVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQT 600
RTT+I+AHRLSTI +AD I V+++G ++ETG+H ELI A+ G Y L +Q
Sbjct: 524 SKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI-AKQGAYEHLYSIQN 577
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/471 (27%), Positives = 216/471 (45%), Gaps = 42/471 (8%)
Query: 683 CVGATLFGA---VQPIYAFAMGSMISVYFLTDHDEIKKKTSIYAFCFLGLAVFTLVI--- 736
VG FG + + +A+ +I+ + LT +++ T +G+A+F VI
Sbjct: 21 IVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLT-----IAIGIALFIFVIVRP 75
Query: 737 --NIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRS 794
I+ Y + + IR+++ + + ++ N G + SR+ D +
Sbjct: 76 PIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKD 133
Query: 795 LVGDRTALLVQTISAVTI--AFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNK 852
+ T L+ + +TI A ++ F+ +L L + + P I+ Y L+ ++ +
Sbjct: 134 FI--LTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 853 AIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFS 912
+A AE E V + + +F+ + K +K +++ + + A
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 913 QSLASCTWALDFWYGGRLIADGYIS--SKALFETFMILV--STGRVIADAGSMTTDIAKG 968
++ + G L G I+ + A F ++ L+ R++A ++T
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQS---- 307
Query: 969 SDAVGSVFAVMDRYTKIEPEDPE-----GHQPERIT-GNIELQNVHFAYPARPDVMIFEG 1022
FA MDR ++ ED + G QP I G I++ +V F Y + I +
Sbjct: 308 -------FASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKD 359
Query: 1023 FSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIAL 1082
++ IE G++ A VG SG GKST+I LI RFYD G + ID +I+ + SLR I L
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419
Query: 1083 VSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
V Q+ LF+ T++ENI G DE E+VEAAK ANAHDFI L +GYDT
Sbjct: 420 VQQDNILFSDTVKENILLGRPTATDE-EVVEAAKMANAHDFIMNLPQGYDT 469
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 230 bits (586), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 163/516 (31%), Positives = 259/516 (50%), Gaps = 27/516 (5%)
Query: 95 VACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQD 154
+ ++ YC + + MR R ++ V +FD ST +++ ++ DS +
Sbjct: 80 ITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ--STGTLLSRITYDSEQVAS 137
Query: 155 AISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMR 214
+ S L V + G +++ F W+L+I+ ++ I + + S+++ M+
Sbjct: 138 SSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQ 197
Query: 215 DEYNKAGTIAEQAISSIRTVYAFVG---ESKTINEFSSA--LQGSVXXXXXXXXXXXXXX 269
+ + T AEQ + + V F G E+K ++ S+ LQG
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQG--------MKMVSASS 249
Query: 270 XSNGVTFGIWS----FLCYYGSRMVMYHGAQGGTVFXXXXXXXXXXXXXXXXXPNLKYFS 325
S+ + I S F+ Y S + GT+ F
Sbjct: 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 309
Query: 326 EAMAAGERIMEMIKRVPKIDSDSMEGE-ILENVLGEVEFKCVQFAYPSRPESIIFKDFCL 384
MAA + + ++ + D EG+ +++ G++EF+ V F YP R E ++ L
Sbjct: 310 RGMAACQTLFAILDSEQEKD----EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINL 364
Query: 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQ 444
IPAGKTVALVG SGSGKST+ +L+ RFY G I++DG + + L LR+Q+ LVSQ
Sbjct: 365 KIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQ 424
Query: 445 EPALFATSIKENILFGK-EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503
LF ++ NI + + E+ S E++ EAA+ + A +FI ++ DT +GE GV +SGG
Sbjct: 425 NVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484
Query: 504 XXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN 563
IL+LDEATSALD+ESER +Q ALD+ RT+++IAHRLSTI
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ 544
Query: 564 ADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
AD I VV+DG ++E G+H EL+ A+ G+Y L ++Q
Sbjct: 545 ADEIVVVEDGIIVERGTHSELL-AQHGVYAQLHKMQ 579
Score = 177 bits (449), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 201/411 (48%), Gaps = 8/411 (1%)
Query: 724 FCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICS 783
+GL + + + I Y +++ + +R R+ ++ V +FD+ S+G + S
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLS 126
Query: 784 RLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARR 843
R+ D+ V S +V+ +++ F M + +W+L+++++ + P+V I
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 186
Query: 844 VLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903
+S+S + + A + + + + F Q K +K R + ++
Sbjct: 187 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246
Query: 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTT 963
+ I Q +AS A + +++ + F +++ R + ++
Sbjct: 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNA 306
Query: 964 DIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQP-ERITGNIELQNVHFAYPARPDVMIFEG 1022
+G A ++FA++D E E EG + +R TG++E +NV F YP R +V
Sbjct: 307 QFQRGMAACQTLFAILDS----EQEKDEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRN 361
Query: 1023 FSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIAL 1082
++KI AGK+ ALVG+SGSGKSTI LI RFYD +G + +D D+R Y L SLR +AL
Sbjct: 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 421
Query: 1083 VSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
VSQ LF T+ NIAY ++E +I EAA+ A A DFI ++ G DT
Sbjct: 422 VSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDT 472
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 229 bits (585), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 162/516 (31%), Positives = 259/516 (50%), Gaps = 27/516 (5%)
Query: 95 VACFLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQD 154
+ ++ YC + + MR R ++ V +FD ST +++ ++ DS +
Sbjct: 80 ITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ--STGTLLSRITYDSEQVAS 137
Query: 155 AISEKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMSLARKMR 214
+ S L V + G +++ F W+L+I+ ++ I + + ++++ M+
Sbjct: 138 SSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQ 197
Query: 215 DEYNKAGTIAEQAISSIRTVYAFVG---ESKTINEFSSA--LQGSVXXXXXXXXXXXXXX 269
+ + T AEQ + + V F G E+K ++ S+ LQG
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQG--------MKMVSASS 249
Query: 270 XSNGVTFGIWS----FLCYYGSRMVMYHGAQGGTVFXXXXXXXXXXXXXXXXXPNLKYFS 325
S+ + I S F+ Y S + GT+ F
Sbjct: 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 309
Query: 326 EAMAAGERIMEMIKRVPKIDSDSMEGE-ILENVLGEVEFKCVQFAYPSRPESIIFKDFCL 384
MAA + + ++ + D EG+ ++E G+VEF+ V F YP R + ++ L
Sbjct: 310 RGMAACQTLFTILDSEQEKD----EGKRVIERATGDVEFRNVTFTYPGR-DVPALRNINL 364
Query: 385 TIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQ 444
IPAGKTVALVG SGSGKST+ +L+ RFY GEI++DG + + L LR+Q+ LVSQ
Sbjct: 365 KIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQ 424
Query: 445 EPALFATSIKENILFGK-EDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG 503
LF ++ NI + + E S E++ EAA+ + A +FI ++ DT +GE GV +SGG
Sbjct: 425 NVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484
Query: 504 XXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRN 563
IL+LDEATSALD+ESER +Q ALD+ RT+++IAHRLSTI
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK 544
Query: 564 ADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
AD I VV+DG ++E G+H++L++ G+Y L ++Q
Sbjct: 545 ADEIVVVEDGVIVERGTHNDLLE-HRGVYAQLHKMQ 579
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 201/411 (48%), Gaps = 8/411 (1%)
Query: 724 FCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICS 783
+GL + + + + Y +++ + +R R+ ++ V +FD+ S+G + S
Sbjct: 69 LVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLS 126
Query: 784 RLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARR 843
R+ D+ V S +V+ +++ F M + +W+L++++I + P+V I
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVS 186
Query: 844 VLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSW 903
+++S + + A + + + + F Q K +K R + ++
Sbjct: 187 KRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVS 246
Query: 904 YAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTT 963
+ I Q +AS A + +++ + F +++ R + ++
Sbjct: 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNA 306
Query: 964 DIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQP-ERITGNIELQNVHFAYPARPDVMIFEG 1022
+G A ++F ++D E E EG + ER TG++E +NV F YP R DV
Sbjct: 307 QFQRGMAACQTLFTILDS----EQEKDEGKRVIERATGDVEFRNVTFTYPGR-DVPALRN 361
Query: 1023 FSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIAL 1082
++KI AGK+ ALVG+SGSGKSTI LI RFYD +G++ +D D+R Y L SLR +AL
Sbjct: 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVAL 421
Query: 1083 VSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
VSQ LF T+ NIAY +++ +I EAA+ A A DFI ++ G DT
Sbjct: 422 VSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDT 472
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 229 bits (583), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 166/525 (31%), Positives = 268/525 (51%), Gaps = 37/525 (7%)
Query: 89 LALGSWVAC-----FLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVIT 143
L LG+ A +L+G + R+R + + R VG+FD T ++I+
Sbjct: 81 LILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR--TPHGDIIS 138
Query: 144 SVSNDSLVIQDAISEKLPNFVMNASLFFGCYLV---AFLMLWRLAIVGFPFVVLLVIP-G 199
V ND D I+ L N ++ FF + A +M++R+ ++ V L ++P
Sbjct: 139 RVINDV----DNINNVLGNSIIQ---FFSGIVTLAGAVIMMFRVNVI-LSLVTLSIVPLT 190
Query: 200 LMYGRTLMSLARKMRDEYNKA----GTIAEQAISSIRTVYAFVGESKTINEFS----SAL 251
++ + + S RK E + I E+ IS + + F E K + +F S
Sbjct: 191 VLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLR 250
Query: 252 QGSVXXXXXXXXXXXXXXXSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFXXXXXXXXXX 311
+ N + F + S +G + + GT+
Sbjct: 251 KVGTKAQIFSGVLPPLMNMVNNLGFALIS---GFGGWLALKDIITVGTIATFIGYSRQFT 307
Query: 312 XXXXXXXPNLKYFSEAMAAGERIMEMIK-RVPKIDSDSMEGEILENVLGEVEFKCVQFAY 370
A+A+ ERI E++ K D D++E L V GE+EFK V F+Y
Sbjct: 308 RPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVE---LREVRGEIEFKNVWFSY 364
Query: 371 PSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL 430
+ + KD I G+ VALVG +GSGK+T++ LL RFY G+I++DG+ I K+
Sbjct: 365 DKKKP--VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI 422
Query: 431 QLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYD 490
+ LRS +G+V Q+ LF+T++KEN+ +G A+ EE+ EAAK +++ +FI+ LP+ Y+
Sbjct: 423 KRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYE 482
Query: 491 TQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRT 550
T + + G +S G P+IL+LDEATS +D+++E+ +Q A+ K + G+T
Sbjct: 483 TVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKT 542
Query: 551 TIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSL 595
+IIIAHRL+TI+NAD+I V++DG+++E G HDELIQ + G Y L
Sbjct: 543 SIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ-KRGFYYEL 586
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 114/475 (24%), Positives = 216/475 (45%), Gaps = 10/475 (2%)
Query: 659 KLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHDEIKKK 718
K P + RRL+ P + V T+ + + + +G I V F+ ++ +
Sbjct: 19 KNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPR 78
Query: 719 TSIYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSS 778
Y + T ++ +Q + + + R+R+ + K+ VG+FD+
Sbjct: 79 ---YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR--TPH 133
Query: 779 GAICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVIIC 838
G I SR+ D + + +++G+ I + A M + L+LV +++ PL ++
Sbjct: 134 GDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLI 193
Query: 839 FYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRES 898
+ + + + + + E +S L I F+ + + ++ ++ + R+
Sbjct: 194 TQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVG 253
Query: 899 IRQSWYAGIGLAFSQSLASCTWALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADA 958
+ ++G+ + + +AL +GG L I+ + R + +
Sbjct: 254 TKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNEL 313
Query: 959 GSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVM 1018
+ I + +F ++D + E +DP+ + + G IE +NV F+Y + V+
Sbjct: 314 SNQFNMIQMALASAERIFEILD--LEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVL 371
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078
+ + I+ G+ ALVG +GSGK+TI+ L+ RFYD +G + +D DIR SLR
Sbjct: 372 --KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRS 429
Query: 1079 HIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
I +V Q+ LF+ T++EN+ YG DE EI EAAK ++ FI L EGY+T
Sbjct: 430 SIGIVLQDTILFSTTVKENLKYGNPGATDE-EIKEAAKLTHSDHFIKHLPEGYET 483
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 155/512 (30%), Positives = 235/512 (45%), Gaps = 25/512 (4%)
Query: 98 FLEGYCWTRTGERQATRMRARYLKAVLRQDVGYFDLHVTSTAEVITSVSNDSLVIQDAIS 157
F YC + +MR R + V +FD ST +++ ++ DS + A S
Sbjct: 83 FASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE--STGGLLSRITYDSEQVAGATS 140
Query: 158 EKLPNFVMNASLFFGCYLVAFLMLWRLAIVGFPFVVLLVIPGLMYGRTLMS-----LARK 212
L + V + G + F W+L++V +++V P + + + +S ++R
Sbjct: 141 RALVSIVREGASIIGLLTLMFWNSWQLSLV-----LIVVAPVVAFAISFVSKRFRKISRN 195
Query: 213 MRDEYNKAGTIAEQAISSIRTVYAFVG---ESKTINEFSSAL-QGSVXXXXXXXXXXXXX 268
M+ + AEQ + + V ++ G E K ++ S+++ Q ++
Sbjct: 196 MQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVI 255
Query: 269 XXSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFXXXXXXXXXXXXXXXXXPNLKYFSEAM 328
+ FL S VF F M
Sbjct: 256 QMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSE---FQRGM 312
Query: 329 AAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPA 388
AA + + ++ + D+ E E V GEV+ K V F Y + E +IP
Sbjct: 313 AACQTLFGLMDLETERDNGKYEAE---RVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQ 368
Query: 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPAL 448
GKTVALVG SGSGKST+ L RFY G I LDG + +L LR LVSQ L
Sbjct: 369 GKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHL 428
Query: 449 FATSIKENILFGKE-DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGGXXXX 507
F +I NI + E + + E++ +AA+ ++A FI +PQ DT +GE G +SGG
Sbjct: 429 FNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQR 488
Query: 508 XXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVI 567
+L+LDEATSALD+ESER +Q ALD+ +T ++IAHRLSTI AD I
Sbjct: 489 VAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEI 548
Query: 568 AVVQDGQVMETGSHDELIQAESGLYTSLVRLQ 599
VV +G+++E G H +L+ A+ G Y L R+Q
Sbjct: 549 LVVDEGEIIERGRHADLL-AQDGAYAQLHRIQ 579
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/420 (28%), Positives = 207/420 (49%), Gaps = 20/420 (4%)
Query: 721 IYAFCFLGLAVFTLVINIIQHYNFAYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGA 780
I F LGL + Y +++ ++ ++R R+ + + V +FDQ+ S+G
Sbjct: 66 ILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE--STGG 123
Query: 781 ICSRLAKDANVVRSLVGDRTALLVQTISAVTIAFTMGLFIAWRLALVMIAVQPLVI--IC 838
+ SR+ D+ V +V+ +++ T+ + +W+L+LV+I V P+V I
Sbjct: 124 LLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAIS 183
Query: 839 FYARRVLLKSMSNKAIKAQAESSKLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRES 898
F ++R + +S A + A + + + + ++ Q K +K R+++
Sbjct: 184 FVSKR--FRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQT 241
Query: 899 IRQSWYAGIGLAFSQSLASCT-WALDFWYGGRLIADGYISSKALFETFMILVSTG----R 953
++ I Q +AS +A+ F L + I ++ TF ++ S R
Sbjct: 242 MKLVSAQSIADPVIQMIASLALFAVLF-----LASVDSIRAELTPGTFTVVFSAMFGLMR 296
Query: 954 VIADAGSMTTDIAKGSDAVGSVFAVMDRYTKIEPEDPEGHQPERITGNIELQNVHFAYPA 1013
+ S+T++ +G A ++F +MD T+ D ++ ER+ G +++++V F Y
Sbjct: 297 PLKALTSVTSEFQRGMAACQTLFGLMDLETE---RDNGKYEAERVNGEVDVKDVTFTYQG 353
Query: 1014 RPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHL 1073
+ + S I GK+ ALVG+SGSGKSTI L RFYD G + +D D+R Y L
Sbjct: 354 KEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKL 412
Query: 1074 RSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
+LRRH ALVSQ LF TI NIAY A E +I +AA+ A+A +FI + +G DT
Sbjct: 413 TNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDT 472
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 152/242 (62%), Gaps = 3/242 (1%)
Query: 360 EVEFKCVQFAYPSRPES-IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
++ F+ ++F Y +P+S +I + L+I G+ + +VG SGSGKST+ L+QRFY P G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNA 478
++++DG + WLR Q+G+V Q+ L SI +NI S+E+VI AAK + A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 479 HNFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVV 538
H+FI +L + Y+T VGE+G +SGG P+IL+ DEATSALD ESE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 539 QEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598
+ K GRT IIIAHRLST++NAD I V++ G+++E G H EL+ LY+ L +L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 599 QT 600
Q+
Sbjct: 241 QS 242
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 81/134 (60%), Gaps = 4/134 (2%)
Query: 1001 NIELQNVHFAYPARPDV-MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
+I +N+ F Y +PD +I + ++ I+ G+ +VG+SGSGKST+ LI+RFY P G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 1060 DVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAAN 1119
V ID D+ LRR + +V Q+ L +I +NI+ A+ + +++ AAK A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAG 119
Query: 1120 AHDFIAGLNEGYDT 1133
AHDFI+ L EGY+T
Sbjct: 120 AHDFISELREGYNT 133
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 152/242 (62%), Gaps = 3/242 (1%)
Query: 360 EVEFKCVQFAYPSRPES-IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
++ F+ ++F Y +P+S +I + L+I G+ + +VG SGSGKST+ L+QRFY P G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNA 478
++++DG + WLR Q+G+V Q+ L SI +NI S+E+VI AAK + A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 479 HNFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVV 538
H+FI +L + Y+T VGE+G +SGG P+IL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 539 QEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598
+ K GRT IIIAHRLST++NAD I V++ G+++E G H EL+ LY+ L +L
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 599 QT 600
Q+
Sbjct: 239 QS 240
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 81/134 (60%), Gaps = 4/134 (2%)
Query: 1001 NIELQNVHFAYPARPDV-MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
+I +N+ F Y +PD +I + ++ I+ G+ +VG+SGSGKST+ LI+RFY P G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 1060 DVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAAN 1119
V ID D+ LRR + +V Q+ L +I +NI+ A+ + +++ AAK A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAG 117
Query: 1120 AHDFIAGLNEGYDT 1133
AHDFI+ L EGY+T
Sbjct: 118 AHDFISELREGYNT 131
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 152/242 (62%), Gaps = 3/242 (1%)
Query: 360 EVEFKCVQFAYPSRPES-IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
++ F+ ++F Y +P+S +I + L+I G+ + +VG SGSGKST+ L+QRFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNA 478
++++DG + WLR Q+G+V Q+ L SI +NI S+E+VI AAK + A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 479 HNFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVV 538
H+FI +L + Y+T VGE+G +SGG P+IL+ DEATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 539 QEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598
+ K GRT IIIAHRLST++NAD I V++ G+++E G H EL+ LY+ L +L
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 599 QT 600
Q+
Sbjct: 245 QS 246
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 81/134 (60%), Gaps = 4/134 (2%)
Query: 1001 NIELQNVHFAYPARPDV-MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
+I +N+ F Y +PD +I + ++ I+ G+ +VG+SGSGKST+ LI+RFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1060 DVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAAN 1119
V ID D+ LRR + +V Q+ L +I +NI+ A+ + +++ AAK A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAG 123
Query: 1120 AHDFIAGLNEGYDT 1133
AHDFI+ L EGY+T
Sbjct: 124 AHDFISELREGYNT 137
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 199 bits (506), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 152/242 (62%), Gaps = 3/242 (1%)
Query: 360 EVEFKCVQFAYPSRPES-IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
++ F+ ++F Y +P+S +I + L+I G+ + +VG +GSGKST+ L+QRFY P G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNA 478
++++DG + WLR Q+G+V Q+ L SI +NI S+E+VI AAK + A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 479 HNFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVV 538
H+FI +L + Y+T VGE+G +SGG P+IL+ DEATSALD ESE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 539 QEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598
+ K GRT IIIAHRLST++NAD I V++ G+++E G H EL+ LY+ L +L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 599 QT 600
Q+
Sbjct: 241 QS 242
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 81/134 (60%), Gaps = 4/134 (2%)
Query: 1001 NIELQNVHFAYPARPDV-MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
+I +N+ F Y +PD +I + ++ I+ G+ +VG++GSGKST+ LI+RFY P G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 1060 DVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAAN 1119
V ID D+ LRR + +V Q+ L +I +NI+ A+ + +++ AAK A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAG 119
Query: 1120 AHDFIAGLNEGYDT 1133
AHDFI+ L EGY+T
Sbjct: 120 AHDFISELREGYNT 133
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 199 bits (506), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 152/242 (62%), Gaps = 3/242 (1%)
Query: 360 EVEFKCVQFAYPSRPES-IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
++ F+ ++F Y +P+S +I + L+I G+ + +VG SGSGKST+ L+QRFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNA 478
++++DG + WLR Q+G+V Q+ L SI +NI S+E+VI AAK + A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 479 HNFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVV 538
H+FI +L + Y+T VGE+G +SGG P+IL+ D+ATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 539 QEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598
+ K GRT IIIAHRLST++NAD I V++ G+++E G H EL+ LY+ L +L
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 599 QT 600
Q+
Sbjct: 245 QS 246
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 81/134 (60%), Gaps = 4/134 (2%)
Query: 1001 NIELQNVHFAYPARPDV-MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
+I +N+ F Y +PD +I + ++ I+ G+ +VG+SGSGKST+ LI+RFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1060 DVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAAN 1119
V ID D+ LRR + +V Q+ L +I +NI+ A+ + +++ AAK A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAG 123
Query: 1120 AHDFIAGLNEGYDT 1133
AHDFI+ L EGY+T
Sbjct: 124 AHDFISELREGYNT 137
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 196 bits (499), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 151/242 (62%), Gaps = 3/242 (1%)
Query: 360 EVEFKCVQFAYPSRPES-IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
++ F+ ++F Y +P+S +I + L+I G+ + +VG SGSGKST+ L+QRFY P G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNA 478
++++DG + WLR Q+G+V Q+ L SI +NI S+E+VI AAK + A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 479 HNFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVV 538
H+FI +L + Y+T VGE+G +SGG P+IL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 539 QEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598
+ K GRT IIIA RLST++NAD I V++ G+++E G H EL+ LY+ L +L
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 599 QT 600
Q+
Sbjct: 239 QS 240
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 81/134 (60%), Gaps = 4/134 (2%)
Query: 1001 NIELQNVHFAYPARPDV-MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
+I +N+ F Y +PD +I + ++ I+ G+ +VG+SGSGKST+ LI+RFY P G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 1060 DVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAAN 1119
V ID D+ LRR + +V Q+ L +I +NI+ A+ + +++ AAK A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAG 117
Query: 1120 AHDFIAGLNEGYDT 1133
AHDFI+ L EGY+T
Sbjct: 118 AHDFISELREGYNT 131
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 196 bits (499), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 151/242 (62%), Gaps = 3/242 (1%)
Query: 360 EVEFKCVQFAYPSRPES-IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
++ F+ ++F Y +P+S +I + L+I G+ + +VG SGSGKST+ L+QRFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNA 478
++++DG + WLR Q+G+V Q+ L SI +NI S+E+VI AAK + A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 479 HNFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVV 538
H+FI +L + Y+T VGE+G +SGG P+IL+ DEATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 539 QEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598
+ K GRT IIIA RLST++NAD I V++ G+++E G H EL+ LY+ L +L
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 599 QT 600
Q+
Sbjct: 245 QS 246
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 81/134 (60%), Gaps = 4/134 (2%)
Query: 1001 NIELQNVHFAYPARPDV-MIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
+I +N+ F Y +PD +I + ++ I+ G+ +VG+SGSGKST+ LI+RFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1060 DVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAAN 1119
V ID D+ LRR + +V Q+ L +I +NI+ A+ + +++ AAK A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAG 123
Query: 1120 AHDFIAGLNEGYDT 1133
AHDFI+ L EGY+T
Sbjct: 124 AHDFISELREGYNT 137
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 195 bits (496), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 158/257 (61%), Gaps = 6/257 (2%)
Query: 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
G +EF+ V F+Y E++ +D T+ G+T+ALVG SG+GKST++ LL RFY G
Sbjct: 52 GRIEFENVHFSYADGRETL--QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109
Query: 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNA 478
I +DG I ++ LRS +G+V Q+ LF +I +NI +G+ A +EV AA+A+
Sbjct: 110 CIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI 169
Query: 479 HNFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVV 538
H+ I P+ Y TQVGERG+++SGG P I+LLDEATSALD+ +ER +
Sbjct: 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 539 QEALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598
Q +L K RTTI++AHRLST+ NAD I V++DG ++E G H+ L+ + G+Y + +L
Sbjct: 230 QASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALL-SRGGVYADMWQL 288
Query: 599 QT---TTPDDNNNATMH 612
Q T +D TM
Sbjct: 289 QQGQEETSEDTKPQTME 305
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 86/151 (56%), Gaps = 4/151 (2%)
Query: 984 KIEPEDPEGHQPERI-TGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSG 1042
+ E +D G P R G IE +NVHF+Y + + + S + G++ ALVG SG+G
Sbjct: 35 ETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETL--QDVSFTVMPGQTLALVGPSGAG 92
Query: 1043 KSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGA 1102
KSTI+ L+ RFYD G ++ID +DI SLR HI +V Q+ LF TI +NI YG
Sbjct: 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGR 152
Query: 1103 SDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
++ E+ AA+AA HD I EGY T
Sbjct: 153 VTAGND-EVEAAAQAAGIHDAIMAFPEGYRT 182
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 194 bits (493), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 149/239 (62%), Gaps = 4/239 (1%)
Query: 364 KCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILD 423
+ V FAY + I +D +A G SG GKST+ +LL+RFY P GEI +D
Sbjct: 5 RHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 424 GVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKE-DASMEEVIEAAKASNAHNFI 482
G ID + L+ RSQ+G VSQ+ A+ A +I+EN+ +G E D + E++ + + A +F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 483 RQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEAL 542
+P Q +T+VGERGV++SGG P+IL+LDEAT++LDSESE +VQ+AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 543 DKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQTT 601
D + GRTT++IAHRLSTI +AD I ++ GQ+ +G H+EL+ A LY V Q T
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV-ATHPLYAKYVSEQLT 240
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 66/129 (51%), Gaps = 2/129 (1%)
Query: 1005 QNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKID 1064
++V FAY I S + + A G SG GKSTI L+ERFY P G++ ID
Sbjct: 5 RHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 1065 DRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANAHDFI 1124
+ I + L + R I VSQ+ + AGTIREN+ YG + + ++ + A A F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 1125 AGLNEGYDT 1133
+ + +T
Sbjct: 123 ENMPDQLNT 131
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 190 bits (483), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 155/244 (63%), Gaps = 2/244 (0%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+EF V F+YP + K IP+G T ALVG +GSGKST+ LL RFY G+I
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI 76
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHN 480
+ G +++K +RS +G+V Q+ LF +IK NIL+GK DA+ EEVI+A K++ ++
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 481 FIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQE 540
FI LP+++DT VG +G+++SGG P+I++ DEATS+LDS++E + Q+
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 541 ALDKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRLQT 600
A++ RT IIIAHRLSTI +A+ I ++ G+++E G+H +L++ +G Y + +Q+
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNMQS 255
Query: 601 TTPD 604
D
Sbjct: 256 GGND 259
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
NIE +V+F+YP + + + + I +G + ALVG +GSGKSTI L+ RFYD +GD
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGD 75
Query: 1061 VKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAKAANA 1120
+KI +++ Y+ S+R I +V Q+ LF TI+ NI YG D DE E+++A K+A
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDE-EVIKATKSAQL 134
Query: 1121 HDFIAGLNEGYDT 1133
+DFI L + +DT
Sbjct: 135 YDFIEALPKKWDT 147
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 188 bits (478), Expect = 1e-47, Method: Composition-based stats.
Identities = 98/249 (39%), Positives = 152/249 (61%), Gaps = 4/249 (1%)
Query: 359 GEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
G V+F+ V FAYP+RP+ ++ + T+ G+ ALVG +GSGKSTV ALLQ Y P GG
Sbjct: 13 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGG 72
Query: 419 EIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFG-KEDASMEEVIEAAKASN 477
+++LDG + + + ++L Q+ V QEP +F S++ENI +G + +MEE+ AA S
Sbjct: 73 QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSG 132
Query: 478 AHNFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERV 537
AH+FI LPQ YDT+V E G Q+SGG P +L+LD+ATSALD+ S+
Sbjct: 133 AHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQ 192
Query: 538 VQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSL 595
V++ L ++ R+ ++I LS + AD I ++ G + E G+H +L++ + G Y ++
Sbjct: 193 VEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME-KKGCYWAM 251
Query: 596 VRLQTTTPD 604
V+ P+
Sbjct: 252 VQAPADAPE 260
Score = 131 bits (330), Expect = 2e-30, Method: Composition-based stats.
Identities = 60/139 (43%), Positives = 88/139 (63%)
Query: 995 PERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFY 1054
P + G ++ Q+V FAYP RPDV++ +G + + G+ TALVG +GSGKST+ L++ Y
Sbjct: 8 PLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 67
Query: 1055 DPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEA 1114
P G + +D + + Y R L R +A V QEP +F +++ENIAYG + + EI A
Sbjct: 68 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAA 127
Query: 1115 AKAANAHDFIAGLNEGYDT 1133
A + AH FI+GL +GYDT
Sbjct: 128 AVKSGAHSFISGLPQGYDT 146
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 186 bits (472), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 144/244 (59%), Gaps = 4/244 (1%)
Query: 356 NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP 415
N+ G V+F+ V FAYP+ P + + T+ GK ALVG +GSGKSTV ALLQ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 416 LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFG-KEDASMEEVIEAAK 474
GG+++LDG + + +L +Q+ V QEP LF S +ENI +G +MEE+ A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 475 ASNAHNFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSES 534
S AH+FI PQ YDT+VGE G Q+SGG PR+L+LD+ATSALD+ +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 535 ERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLY 592
+ VQ L ++ RT ++I H+LS A I +++G V E G+H +L++ G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLME-RGGCY 250
Query: 593 TSLV 596
S+V
Sbjct: 251 RSMV 254
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 80/139 (57%)
Query: 995 PERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFY 1054
P + G ++ Q+V FAYP P+V + +G + + GK TALVG +GSGKST+ L++ Y
Sbjct: 10 PLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
Query: 1055 DPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEA 1114
P G V +D + Y L +A V QEP LF + RENIAYG + EI
Sbjct: 70 QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAV 129
Query: 1115 AKAANAHDFIAGLNEGYDT 1133
A + AHDFI+G +GYDT
Sbjct: 130 AMESGAHDFISGFPQGYDT 148
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 142/244 (58%), Gaps = 4/244 (1%)
Query: 356 NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP 415
N+ G V+F+ V FAYP+ P + + T+ GK ALVG +GSGKSTV ALLQ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 416 LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFG-KEDASMEEVIEAAK 474
GG+++LDG + + +L +Q+ V QEP LF S +ENI +G +MEE+ A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 475 ASNAHNFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSES 534
S AH+FI PQ YDT+VGE G Q+SGG PR+L+LD ATSALD+ +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 535 ERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLY 592
+ VQ L ++ RT ++I +LS A I +++G V E G+H +L++ G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME-RGGCY 250
Query: 593 TSLV 596
S+V
Sbjct: 251 RSMV 254
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 80/139 (57%)
Query: 995 PERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFY 1054
P + G ++ Q+V FAYP P+V + +G + + GK TALVG +GSGKST+ L++ Y
Sbjct: 10 PLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
Query: 1055 DPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEA 1114
P G V +D + Y L +A V QEP LF + RENIAYG + EI
Sbjct: 70 QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAV 129
Query: 1115 AKAANAHDFIAGLNEGYDT 1133
A + AHDFI+G +GYDT
Sbjct: 130 AMESGAHDFISGFPQGYDT 148
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 177 bits (448), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 141/244 (57%), Gaps = 4/244 (1%)
Query: 356 NVLGEVEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAP 415
N+ G V+F+ V FAYP+ P + + T+ GK ALVG +GSGKSTV ALLQ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 416 LGGEIILDGVSIDKLQLKWLRSQMGLVSQEPALFATSIKENILFG-KEDASMEEVIEAAK 474
GG+++LDG + + +L +Q+ V QEP LF S +ENI +G +MEE+ A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 475 ASNAHNFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSES 534
S AH+FI PQ YDT+VGE G Q++ G PR+L+LD ATSALD+ +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 535 ERVVQEALDKAV--VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLY 592
+ VQ L ++ RT ++I +LS A I +++G V E G+H +L++ G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME-RGGCY 250
Query: 593 TSLV 596
S+V
Sbjct: 251 RSMV 254
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 80/139 (57%)
Query: 995 PERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFY 1054
P + G ++ Q+V FAYP P+V + +G + + GK TALVG +GSGKST+ L++ Y
Sbjct: 10 PLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
Query: 1055 DPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEA 1114
P G V +D + Y L +A V QEP LF + RENIAYG + EI
Sbjct: 70 QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAV 129
Query: 1115 AKAANAHDFIAGLNEGYDT 1133
A + AHDFI+G +GYDT
Sbjct: 130 AMESGAHDFISGFPQGYDT 148
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 127/455 (27%), Positives = 224/455 (49%), Gaps = 13/455 (2%)
Query: 138 TAEVITSVSNDSLVIQDAISEKLPNFVMNASLFFGCYLVAFLMLWRLA---IVGFPFVVL 194
T+ +IT ++ND +Q+ + L V LF G ++A + +L+ I P +VL
Sbjct: 119 TSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVL 178
Query: 195 LVIPGLMYGRTLMSLARKMRDEYNKAGTIAEQAISSIRTVYAFVGESKTINEFSSA---L 251
L + G L RK+++ ++ + + + +R V AF E F A L
Sbjct: 179 LFVWLTKKGNPLF---RKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESL 235
Query: 252 QGSVXXXXXXXXXXXXXXXSNGVTFGIWSFLCYYGSRMVMYHGAQGGTVFXXXXXXXXXX 311
+ S+ V G+ + L ++G +V + + G++
Sbjct: 236 RRSIISAFSLIVFALPLFIFI-VNMGMIAVL-WFGGVLVRNNQMEIGSIMAYTNYLMQIM 293
Query: 312 XXXXXXXPNLKYFSEAMAAGERIMEMIKRVPKIDSDSMEGEILENVLGEVEFKCVQFAYP 371
L + A A+ +R++E++ P I+ ++ L NV G V F+ V+F Y
Sbjct: 294 FSLMMIGNILNFIVRASASAKRVLEVLNEKPAIE-EADNALALPNVEGSVSFENVEFRYF 352
Query: 372 SRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431
+ ++ ++ G VA++G +GSGKST++ L+ R P G + +D + + ++
Sbjct: 353 ENTDPVL-SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK 411
Query: 432 LKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDT 491
LK LR + V QE LF+ +IKEN+ +G+EDA+ +E++EAAK + H+FI LP+ YD+
Sbjct: 412 LKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDS 471
Query: 492 QVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTT 551
+V G SGG P++L+LD+ TS++D +E+ + + L + G TT
Sbjct: 472 RVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTT 531
Query: 552 IIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQ 586
II ++ T AD I V+ +G+V G+H EL++
Sbjct: 532 FIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566
Score = 159 bits (402), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 110/393 (27%), Positives = 190/393 (48%), Gaps = 13/393 (3%)
Query: 745 AYMGEHLTKRIRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRTALLV 804
+Y ++ +R + K+L+F + ++ SS + +RL D +++LV ++V
Sbjct: 88 SYASQNFGADLRRDLFRKVLSFSISNVNRFHTSS--LITRLTNDVTQLQNLVMMLLRIVV 145
Query: 805 QTISAVTIAFTMGLFIAWRLALVMIAVQPLVIICFYARRVLLKSMSNKAIKAQAESS--- 861
+ M + I +L+ V+I + P +++ F V L N + ES+
Sbjct: 146 RAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLF----VWLTKKGNPLFRKIQESTDEV 201
Query: 862 -KLAAEAVSNLRTITAFSSQHRILKMLEKAQQGPRRESIRQSWYAGIGLAFSQSLASCTW 920
++ E + +R + AF + + KA + RR I L + +
Sbjct: 202 NRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGM 261
Query: 921 ALDFWYGGRLIADGYISSKALFETFMILVSTGRVIADAGSMTTDIAKGSDAVGSVFAVMD 980
W+GG L+ + + ++ L+ + G++ I + S + V V++
Sbjct: 262 IAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLN 321
Query: 981 RYTKIEPEDPEGHQPERITGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSG 1040
IE D P + G++ +NV F Y D + G + ++ G A++G++G
Sbjct: 322 EKPAIEEADNALALPN-VEGSVSFENVEFRYFENTD-PVLSGVNFSVKPGSLVAVLGETG 379
Query: 1041 SGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAY 1100
SGKST++ LI R DP +G V++D+ D+R+ L+ LR HI+ V QE LF+GTI+EN+ +
Sbjct: 380 SGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKW 439
Query: 1101 GASDEIDESEIVEAAKAANAHDFIAGLNEGYDT 1133
G D D+ EIVEAAK A HDFI L EGYD+
Sbjct: 440 GREDATDD-EIVEAAKIAQIHDFIISLPEGYDS 471
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 2/207 (0%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
I ++ +I G+ V L+G +GSGKST+++ R GEI +DGVS D + L+ R
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 438 QMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERG 497
G++ Q+ +F+ + ++N L S +E+ + A + I Q P + D + + G
Sbjct: 95 AFGVIPQKVFIFSGTFRKN-LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153
Query: 498 VQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHR 557
+S G +ILLLDE ++ LD + ++++ L +A T I+ R
Sbjct: 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR 213
Query: 558 LSTIRNADVIAVVQDGQVMETGSHDEL 584
+ + D V+++ +V + S EL
Sbjct: 214 IEAMLECDQFLVIEENKVRQYDSILEL 240
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078
I E S I G+ L+G++GSGKST++ R + +G+++ID S L R+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 1079 HIALVSQEPTLFAGTIRENIAYGAS 1103
++ Q+ +F+GT R+N+ A+
Sbjct: 95 AFGVIPQKVFIFSGTFRKNLDPNAA 119
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 15/207 (7%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
L I G+ +AL+G SGSGKST++ + Y P G+I D + +L K +GLV
Sbjct: 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVF 81
Query: 444 QEPALFA-TSIKENILFGKE--DASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQM 500
Q AL+ ++ +NI F E A EE+ + + I +L +Y Q+
Sbjct: 82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW-------QL 134
Query: 501 SGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDK--AVVGRTTIIIAH-R 557
SGG P +LLLDE S LD+ V+ L + +G TT+ + H +
Sbjct: 135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ 194
Query: 558 LSTIRNADVIAVVQDGQVMETGSHDEL 584
+ AD IAV+++G++++ G+ DE+
Sbjct: 195 AEALAMADRIAVIREGEILQVGTPDEV 221
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 10/100 (10%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIALV 1083
++KI+ G+ AL+G SGSGKST++ I Y P G + D++D+ L R++ LV
Sbjct: 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVT--ELPPKDRNVGLV 80
Query: 1084 SQEPTLFAG-TIRENIAY------GASDEIDESEIVEAAK 1116
Q L+ T+ +NIA+ +EID+ ++ E AK
Sbjct: 81 FQNWALYPHMTVYKNIAFPLELRKAPREEIDK-KVREVAK 119
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 22/231 (9%)
Query: 372 SRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ 431
+R + +IP G VA+VG G GKS++++ L + G + + G Q
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQ 73
Query: 432 LKWLRSQMGLVSQEPALFATSIKENILFGK--EDASMEEVIEAAKASNAHNFIRQLPQQY 489
W+++ S++ENILFG E+ VI+A + LP
Sbjct: 74 QAWIQND-------------SLRENILFGCQLEEPYYRSVIQACALLPD---LEILPSGD 117
Query: 490 DTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEAL---DKAV 546
T++GE+GV +SGG I L D+ SA+D+ + + E + +
Sbjct: 118 RTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML 177
Query: 547 VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSLVR 597
+T I++ H +S + DVI V+ G++ E GS+ EL+ A G + +R
Sbjct: 178 KNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELL-ARDGAFAEFLR 227
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
+I ++N F + AR D G + I G A+VGQ G GKS+++ + D ++G
Sbjct: 3 SITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1061 VKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDE 1105
V I + +A V Q+ + ++RENI +G E
Sbjct: 62 VAI-------------KGSVAYVPQQAWIQNDSLRENILFGCQLE 93
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 103/216 (47%), Gaps = 23/216 (10%)
Query: 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPAL 448
G+ VAL+G SG GK+T + +L Y P GEI D V ++ + K+ ++G+V Q AL
Sbjct: 29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REVGMVFQNYAL 86
Query: 449 FA-TSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501
+ ++ ENI F +D + V+E A+ N + + P Q+S
Sbjct: 87 YPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLS 135
Query: 502 GGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALD--KAVVGRTTIIIAH-RL 558
GG P++LL DE S LD+ +++ + + +G T++ + H +
Sbjct: 136 GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195
Query: 559 STIRNADVIAVVQDGQVMETGSHDELIQAESGLYTS 594
+ A IAV G++++ G+ DE+ + ++ +
Sbjct: 196 EAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVA 231
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 16/106 (15%)
Query: 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDD---RDIRSYHLRSLR 1077
+G S +++ G+ AL+G SG GK+T + ++ Y P G++ DD DI +
Sbjct: 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY----- 74
Query: 1078 RHIALVSQEPTLFAG-TIRENIAYG------ASDEIDESEIVEAAK 1116
R + +V Q L+ T+ ENIA+ + DE+ E +VE A+
Sbjct: 75 REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEV-EKRVVEIAR 119
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 29/233 (12%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI--DKLQLKWL 435
+ D L++ G+ + ++G SG GK+T++ L F P GEI L G +I L
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 436 RSQMGLVSQEPALFA-TSIKENILFG---------KEDASMEEVIEAAKASNAHNFIRQL 485
++G + QE LF ++ NI +G +E +E ++E I +L
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTG-------ISEL 131
Query: 486 PQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKA 545
+Y ++SGG P ++LLDE SALD + R ++E + A
Sbjct: 132 AGRYPH-------ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAA 184
Query: 546 VV--GRTTIIIAH-RLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSL 595
+ G++ + ++H R ++ AD IAV++ G++++T S EL + + L +L
Sbjct: 185 LRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAAL 237
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI--RSYHL 1073
+ + S+ ++ G+ ++G SG GK+T++ + F P G++ + + I ++ +L
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 1074 RSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
R + + QE LF T+ NIAYG
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYG 104
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 24/217 (11%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQ 438
+ L + +G+ ++G +G+GK+ + L+ F+ P G I+LDG + L + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 439 MGLVSQEPALFA-TSIKENILFG---KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVG 494
+ V Q +LF ++K+N+ FG K+ + V++ A+ + + + P
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-------- 125
Query: 495 ERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGR----T 550
+ +SGG P+ILLLDE SALD ++ +E L +V+ + T
Sbjct: 126 ---LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML--SVLHKKNKLT 180
Query: 551 TIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELIQ 586
+ I H + R AD IAVV DG++++ G +E+ +
Sbjct: 181 VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 1020 FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079
+ S+K+E+G+ ++G +G+GK+ + LI F+ P G + +D +D+ L +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD--LSPEKHD 73
Query: 1080 IALVSQEPTLFAG-TIRENIAYG 1101
IA V Q +LF +++N+ +G
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG 96
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 22/218 (10%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL---QLKWL 435
+ L +PAG+ ++G SG+GKST+I + P G +++DG + L +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 436 RSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQ------LPQQY 489
R Q+G++ Q L ++ +FG +E ++ + + L ++
Sbjct: 81 RRQIGMIFQHFNLLSS----RTVFGNVALPLE--LDNTPKDEVKRRVTELLSLVGLGDKH 134
Query: 490 DTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALD--KAVV 547
D+ +SGG P++LL DEATSALD + R + E L +
Sbjct: 135 DSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL 190
Query: 548 GRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDEL 584
G T ++I H + + R D +AV+ +G+++E + E+
Sbjct: 191 GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 1017 VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY---HL 1073
+ S+ + AG+ ++G SG+GKST+I + P +G V +D +++ + L
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 77
Query: 1074 RSLRRHIALVSQEPTLFAG-TIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132
RR I ++ Q L + T+ N+A E+D + E + + GL + +D
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPL--ELDNTPKDEVKRRVTELLSLVGLGDKHD 135
Query: 1133 T 1133
+
Sbjct: 136 S 136
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 115/240 (47%), Gaps = 17/240 (7%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+EF V+ YP S+ + I G+ V L+G SGSGK+T++ L+ P G++
Sbjct: 15 IEFVGVEKIYPGGARSV--RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAH 479
+ G + L + + +GLV Q ALF ++ +N+ FG + + + A+
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 480 NFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESER--- 536
F+R + Y + ++SGG P++LL DE +A+D++ R
Sbjct: 131 RFMRL--ESYANRFPH---ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185
Query: 537 -VVQEALDKAVVGRTTIIIAH-RLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTS 594
V++ D+ +G T++ + H + + AD + V+ +G V + G+ +E+ + L+ +
Sbjct: 186 TFVRQVHDE--MGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVA 243
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
IE V YP G S +I G+ L+G SGSGK+TI+ LI P KGD
Sbjct: 14 TIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD 71
Query: 1061 VKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG------ASDEID 1107
V I + R L +R++ LV Q LF T+ +N+++G DE+D
Sbjct: 72 VWIGGK--RVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD 123
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 27/237 (11%)
Query: 361 VEFKCVQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+E V F Y + KD GK +VG +GSGK+T++ +L A GEI
Sbjct: 12 IELNSVSFRYNG---DYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA-AGEI 67
Query: 421 ILDGVSIDKLQLKWLRSQMGLVSQEPA--LFATSIKENILFGKEDASMEEVIEAAKASNA 478
LDG D LR +G V Q P+ + +++E++ F E ++E S
Sbjct: 68 FLDGSPADPF---LLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDE-------SEM 117
Query: 479 HNFIRQLPQQYDTQVGERG------VQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDS 532
I+++ + VG G + +SGG R L LDE S LD
Sbjct: 118 RKRIKKVLE----LVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDP 173
Query: 533 ESERVVQEALDK-AVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAE 588
S+R + + L+ G+ I++ H L + + D I + +G + GS +E ++ E
Sbjct: 174 PSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVERE 230
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 14/120 (11%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
IEL +V F Y + + + + E GK +VG++GSGK+T++ ++ G++
Sbjct: 12 IELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 1062 KIDDRDIRSYHLRSLRRHIALVSQEPT--LFAGTIRENIAYGASDEI---DESEIVEAAK 1116
+D + LR+++ V Q P+ + T+ E++A+ S EI DESE+ + K
Sbjct: 68 FLDGSPADPFL---LRKNVGYVFQNPSSQIIGATVEEDVAF--SLEIMGLDESEMRKRIK 122
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 101/218 (46%), Gaps = 22/218 (10%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL---QLKWL 435
+ L +PAG+ ++G SG+GKST+I + P G +++DG + L +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 436 RSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQ------LPQQY 489
R Q+G++ Q L ++ +FG +E ++ + + L ++
Sbjct: 104 RRQIGMIFQHFNLLSS----RTVFGNVALPLE--LDNTPKDEVKRRVTELLSLVGLGDKH 157
Query: 490 DTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALD--KAVV 547
D+ +SGG P++LL D+ATSALD + R + E L +
Sbjct: 158 DSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 548 GRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDEL 584
G T ++I H + + R D +AV+ +G+++E + E+
Sbjct: 214 GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 1017 VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY---HL 1073
+ S+ + AG+ ++G SG+GKST+I + P +G V +D +++ + L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 1074 RSLRRHIALVSQEPTLFAG-TIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132
RR I ++ Q L + T+ N+A E+D + E + + GL + +D
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPL--ELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 1133 T 1133
+
Sbjct: 159 S 159
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 22/218 (10%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL---QLKWL 435
+ L +PAG+ ++G SG+GKST+I + P G +++DG + L +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 436 RSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQ------LPQQY 489
R Q+G + Q L ++ +FG +E ++ + + L ++
Sbjct: 104 RRQIGXIFQHFNLLSS----RTVFGNVALPLE--LDNTPKDEVKRRVTELLSLVGLGDKH 157
Query: 490 DTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALD--KAVV 547
D+ +SGG P++LL D+ATSALD + R + E L +
Sbjct: 158 DSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 548 GRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDEL 584
G T ++I H + R D +AV+ +G+++E + E+
Sbjct: 214 GLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEV 251
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 1017 VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSY---HL 1073
+ S+ + AG+ ++G SG+GKST+I + P +G V +D +++ + L
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100
Query: 1074 RSLRRHIALVSQEPTLFAG-TIRENIAYGASDEIDESEIVEAAKAANAHDFIAGLNEGYD 1132
RR I + Q L + T+ N+A E+D + E + + GL + +D
Sbjct: 101 TKARRQIGXIFQHFNLLSSRTVFGNVALPL--ELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 1133 T 1133
+
Sbjct: 159 S 159
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 16/213 (7%)
Query: 375 ESIIF--KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ- 431
E II+ K+ L I G+ V+++G SGSGKST++ ++ P GE+ +D + + L
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 432 ---LKWLRSQMGLVSQE----PALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQ 484
K R ++G V Q+ P L A E L K +M +A + +
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK-MAE 133
Query: 485 LPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDK 544
L +++ + Q+SGG P I+L D+ T ALDS++ + + L K
Sbjct: 134 LEERF---ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 545 --AVVGRTTIIIAHRLSTIRNADVIAVVQDGQV 575
G+T +++ H ++ R + I ++DG+V
Sbjct: 191 LNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 1002 IELQNVHFAYPARPDVMI-FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
I+L+NV Y +++ + ++ I+ G+ +++G SGSGKST++ +I P +G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1061 VKIDD---RDIRSYHLRSLRR-HIALVSQEPTL 1089
V ID+ D+ L +RR I V Q+ L
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 66.6 bits (161), Expect = 8e-11, Method: Composition-based stats.
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 20/215 (9%)
Query: 375 ESIIF--KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ- 431
E II+ K+ L I G+ V++ G SGSGKST + ++ P GE+ +D + + L
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 432 ---LKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKA-SNAHNFIRQLPQ 487
K R ++G V Q+ L +L E+ + + + A S R L
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIP------LLTALENVELPLIFKYRGAXSGEERRKRALEC 128
Query: 488 QYDTQVGERGV-----QMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEAL 542
++ ER Q+SGG P I+L DE T ALDS++ + + L
Sbjct: 129 LKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLL 188
Query: 543 DK--AVVGRTTIIIAHRLSTIRNADVIAVVQDGQV 575
K G+T +++ H ++ R + I ++DG+V
Sbjct: 189 KKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 1002 IELQNVHFAYPARPDVMI-FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
I+L+NV Y +++ + ++ I+ G+ ++ G SGSGKST + +I P +G+
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 1061 VKIDD---RDIRSYHLRSLRR-HIALVSQEPTL 1089
V ID+ D+ L +RR I V Q+ L
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 40/224 (17%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQM 439
+D+C+ L+G +G+GKS + L+ P GE+ L+G I L + R +
Sbjct: 24 RDYCV---------LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGI 72
Query: 440 GLVSQEPALFA-TSIKENILFGKEDASMEEVIE-----AAKASNAHNFIRQLPQQYDTQV 493
G V Q+ ALF S+ NI +G + E A K AH R
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDR---------- 122
Query: 494 GERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESE-------RVVQEALDKAV 546
+ ++SGG PR+LLLDE SA+D +++ R VQ D +
Sbjct: 123 --KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI 180
Query: 547 VGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAESG 590
+ T +I + AD +AV+ +G+++E G EL A++G
Sbjct: 181 LHVTHDLIEAAML----ADEVAVMLNGRIVEKGKLKELFSAKNG 220
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 1023 FSIKIEAGKS-TALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIA 1081
++ E G+ L+G +G+GKS + LI P +G+V+++ DI L RR I
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIG 73
Query: 1082 LVSQEPTLFAG-TIRENIAYG 1101
V Q+ LF ++ NIAYG
Sbjct: 74 FVPQDYALFPHLSVYRNIAYG 94
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 19/222 (8%)
Query: 366 VQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425
V F++ + + K+ L I G+ +A+ G +GSGK++++ L+ G I G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 426 SIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEE--VIEAAKASNAHNFIR 483
++ SQ + +IKENI+FG S +E KA I
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIIFG---VSYDEYRYKSVVKACQLQQDIT 144
Query: 484 QLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDS-ESERVVQEAL 542
+ +Q +T +GE GV +SGG + LLD LD E+V + +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 543 DKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDEL 584
K + +T I++ ++ +R AD I ++ G G+ EL
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 1006 NVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDD 1065
NV F++ + + ++ IE G+ A+ G +GSGK++++ LI + +G +K
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1066 RDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS-DEIDESEIVEAAK 1116
R ++ SQ + GTI+ENI +G S DE +V+A +
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQ 138
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 30/220 (13%)
Query: 375 ESIIF--KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQ- 431
E II+ K+ L I G+ V+++G SGSGKST++ ++ P GE+ +D + + L
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 432 ---LKWLRSQMGLVSQE----PALFATSIKENILFGKEDASM------EEVIEAAK-ASN 477
K R ++G V Q+ P L A E L K +M + +E K A
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 478 AHNFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERV 537
F P Q+SGG P I+L D+ T ALDS++
Sbjct: 135 EERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183
Query: 538 VQEALDK--AVVGRTTIIIAHRLSTIRNADVIAVVQDGQV 575
+ + L K G+T +++ H ++ R + I ++DG+V
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 1002 IELQNVHFAYPARPDVMI-FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
++L+NV Y +++ + ++ I+ G+ +++G SGSGKST++ +I P +G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1061 VKIDD---RDIRSYHLRSLRR-HIALVSQEPTLF 1090
V ID+ D+ L +RR I V Q+ L
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 19/222 (8%)
Query: 366 VQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425
V F++ + + K+ L I G+ +A+ G +GSGK++++ L+ G I G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 426 SIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEE--VIEAAKASNAHNFIR 483
++ SQ + +IKENI+FG S +E KA I
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIIFG---VSYDEYRYKSVVKACQLQQDIT 144
Query: 484 QLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDS-ESERVVQEAL 542
+ +Q +T +GE GV +SGG + LLD LD E+V + +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 543 DKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDEL 584
K + +T I++ ++ +R AD I ++ G G+ EL
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 1006 NVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDD 1065
NV F++ + + ++ IE G+ A+ G +GSGK++++ LI + +G +K
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1066 RDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS-DEIDESEIVEAAK 1116
R ++ SQ + GTI+ENI +G S DE +V+A +
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQ 138
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 7/220 (3%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
+ + D L I +G+ VA++G +G+GKST++ LL + +P GE L G +++ Q K
Sbjct: 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKA 82
Query: 435 LRSQMGLVSQEPAL-FATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493
L ++ Q L F S+ E I G+ + +A + A L Q+ D +V
Sbjct: 83 LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-DYRV 141
Query: 494 GERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALD----SESERVVQEALDKAVVGR 549
G Q PR L LDE TSALD + R++++ + +
Sbjct: 142 LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV 201
Query: 550 TTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDELIQAES 589
++ L+ + AD I ++ G+++ G+ +E++ AE+
Sbjct: 202 CCVLHDLNLAALY-ADRIMLLAQGKLVACGTPEEVLNAET 240
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 1004 LQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKI 1063
L+ H Y + +I + S+ I +G+ A++G +G+GKST++ L+ + P G+ +
Sbjct: 12 LEASHLHYHVQQQALIND-VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70
Query: 1064 DDRDIRSYHLRSLRRHIALVSQEPTL-FAGTIRENIAYG 1101
+++ S+ ++L R A++ Q L F ++ E I G
Sbjct: 71 LGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMG 109
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 19/210 (9%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ KD I G+ +A+ G +G+GK++++ ++ P G+I G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 438 QMGLVSQEPALFATSIKENILFG--KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495
++ SQ + +IKENI+FG ++ VI KA I + ++ + +GE
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVI---KACQLEEDISKFAEKDNIVLGE 126
Query: 496 RGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESER-VVQEALDKAVVGRTTIII 554
G+ +SGG + LLD LD +E+ + + + K + +T I++
Sbjct: 127 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 186
Query: 555 AHRLSTIRNADVIAVVQDGQVMETGSHDEL 584
++ ++ AD I ++ +G G+ EL
Sbjct: 187 TSKMEHLKKADKILILHEGSSYFYGTFSEL 216
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 999 TGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK 1058
T + ++NV A+ + + + KIE G+ A+ G +G+GK++++ +I +P +
Sbjct: 4 TTEVVMENVT-AFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1059 GDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS-DEIDESEIVEAAK 1116
G +K R I+ SQ + GTI+ENI +G S DE +++A +
Sbjct: 63 GKIKHSGR-------------ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQ 108
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 19/210 (9%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ KD I G+ +A+ G +G+GK++++ ++ P G+I G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 438 QMGLVSQEPALFATSIKENILFG--KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495
++ SQ + +IKENI+FG ++ VI KA I + ++ + +GE
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVI---KACQLEEDISKFAEKDNIVLGE 138
Query: 496 RGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESER-VVQEALDKAVVGRTTIII 554
G+ +SGG + LLD LD +E+ + + + K + +T I++
Sbjct: 139 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 198
Query: 555 AHRLSTIRNADVIAVVQDGQVMETGSHDEL 584
++ ++ AD I ++ +G G+ EL
Sbjct: 199 TSKMEHLKKADKILILHEGSSYFYGTFSEL 228
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 999 TGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK 1058
T + ++NV A+ + + + KIE G+ A+ G +G+GK++++ +I +P +
Sbjct: 16 TTEVVMENVT-AFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 74
Query: 1059 GDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS-DEIDESEIVEAAK 1116
G +K R I+ SQ + GTI+ENI +G S DE +++A +
Sbjct: 75 GKIKHSGR-------------ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQ 120
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 93/223 (41%), Gaps = 31/223 (13%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI--DKLQLKWL 435
+ K + I G+ V ++G SGSGKST + L GEII+DG+++ L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 436 RSQMGLVSQEPALFA-TSIKENILFGK-----------EDASMEEVIEAAKASNAHNFIR 483
R ++G+V Q LF ++ NI E +ME + + AH +
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 484 QLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALD 543
L SGG P+I+L DE TSALD E V +
Sbjct: 159 SL---------------SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 203
Query: 544 K-AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
+ A G T +++ H + R D + + G ++E G ++L
Sbjct: 204 QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+++ +VH + + + +G ++ I G+ ++G SGSGKST + + D +G++
Sbjct: 22 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 1062 KIDDRDIRSY--HLRSLRRHIALVSQEPTLFAG-TIRENI 1098
ID ++++ +L +R + +V Q LF T+ NI
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNI 121
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 93/223 (41%), Gaps = 31/223 (13%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI--DKLQLKWL 435
+ K + I G+ V ++G SGSGKST + L GEII+DG+++ L +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 436 RSQMGLVSQEPALFA-TSIKENILFGK-----------EDASMEEVIEAAKASNAHNFIR 483
R ++G+V Q LF ++ NI E +ME + + AH +
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 137
Query: 484 QLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALD 543
L SGG P+I+L DE TSALD E V +
Sbjct: 138 SL---------------SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 182
Query: 544 K-AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
+ A G T +++ H + R D + + G ++E G ++L
Sbjct: 183 QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 225
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+++ +VH + + + +G ++ I G+ ++G SGSGKST + + D +G++
Sbjct: 1 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 60
Query: 1062 KIDDRDIRSY--HLRSLRRHIALVSQEPTLFAG-TIRENI 1098
ID ++++ +L +R + +V Q LF T+ NI
Sbjct: 61 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNI 100
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 18/230 (7%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID--KLQLKWLR 436
K + I G+ A++GG+G GKST+ P G I+ D ID + + LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 437 SQMGLVSQEP--ALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVG 494
+G+V Q+P LF+ S+ +++ FG + + E + NA L + +
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNA------LKRTGIEHLK 137
Query: 495 ERGVQ-MSGGXXXXXXXXXXXXXXPRILLLDEATSALD----SESERVVQEALDKAVVGR 549
++ +S G P++L+LDE T+ LD SE +++ E + +G
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM--QKELGI 195
Query: 550 TTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELIQAESGLYTSLVRL 598
T II H + + D + V+++G+V+ G+ E+ + + +RL
Sbjct: 196 TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRL 245
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 1020 FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDR--DIRSYHLRSLR 1077
+G ++ I+ G+ TA++G +G GKST+ P G + D++ D + LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 1078 RHIALVSQEP--TLFAGTIRENIAYGASD-EIDESEI 1111
I +V Q+P LF+ ++ +++++GA + ++ E EI
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEI 120
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 19/222 (8%)
Query: 366 VQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425
V F++ + + K+ L I G+ +A+ G +GSGK++++ L+ G I G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 426 SIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEE--VIEAAKASNAHNFIR 483
++ SQ + +IKENI+ G S +E KA I
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIIRG---VSYDEYRYKSVVKACQLQQDIT 144
Query: 484 QLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDS-ESERVVQEAL 542
+ +Q +T +GE GV +SGG + LLD LD E+V + +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 543 DKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDEL 584
K + +T I++ ++ +R AD I ++ G G+ EL
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 1006 NVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDD 1065
NV F++ + + ++ IE G+ A+ G +GSGK++++ LI + +G +K
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1066 RDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS-DEIDESEIVEAAK 1116
R ++ SQ + GTI+ENI G S DE +V+A +
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQ 138
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 19/222 (8%)
Query: 366 VQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425
V F++ + + K+ L I G+ +A+ G +GSGK++++ L+ G I G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 426 SIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEE--VIEAAKASNAHNFIR 483
++ SQ + +IKENI+ G S +E KA I
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIISG---VSYDEYRYKSVVKACQLQQDIT 144
Query: 484 QLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDS-ESERVVQEAL 542
+ +Q +T +GE GV +SGG + LLD LD E+V + +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 543 DKAVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDEL 584
K + +T I++ ++ +R AD I ++ G G+ EL
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 1006 NVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDD 1065
NV F++ + + ++ IE G+ A+ G +GSGK++++ LI + +G +K
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1066 RDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS-DEIDESEIVEAAK 1116
R ++ SQ + GTI+ENI G S DE +V+A +
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQ 138
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 16/220 (7%)
Query: 366 VQFAYPSRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGV 425
V F++ + + K+ L I G+ +A+ G +GSGK++++ L+ G I G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG- 99
Query: 426 SIDKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQL 485
++ SQ + +IKENI+ D + + KA I +
Sbjct: 100 ------------RVSFCSQFSWIMPGTIKENIIGVSYDEYRYKSV--VKACQLQQDITKF 145
Query: 486 PQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDS-ESERVVQEALDK 544
+Q +T +GE GV +SGG + LLD LD E+V + + K
Sbjct: 146 AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 205
Query: 545 AVVGRTTIIIAHRLSTIRNADVIAVVQDGQVMETGSHDEL 584
+ +T I++ ++ +R AD I ++ G G+ EL
Sbjct: 206 LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 245
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 1006 NVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDD 1065
NV F++ + + ++ IE G+ A+ G +GSGK++++ LI + +G +K
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1066 RDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAK 1116
R ++ SQ + GTI+ENI + DE +V+A +
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIGVSYDEYRYKSVVKACQ 137
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 19/210 (9%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ KD I G+ +A+ G +G+GK++++ ++ P G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 438 QMGLVSQEPALFATSIKENILFG--KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495
++ SQ + +IKENI+FG ++ VI KA I + ++ + +GE
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVI---KACQLEEDISKFAEKDNIVLGE 156
Query: 496 RGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESER-VVQEALDKAVVGRTTIII 554
G+ +S G + LLD LD +E+ + + + K + +T I++
Sbjct: 157 GGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 555 AHRLSTIRNADVIAVVQDGQVMETGSHDEL 584
++ ++ AD I ++ +G G+ EL
Sbjct: 217 TSKMEHLKKADKILILHEGSSYFYGTFSEL 246
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078
+ + + KIE G+ A+ G +G+GK++++ +I +P +G +K R
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 1079 HIALVSQEPTLFAGTIRENIAYGAS-DEIDESEIVEAAK 1116
I+ SQ + GTI+ENI +G S DE +++A +
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQ 138
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 19/210 (9%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ KD I G+ +A+ G +G+GK++++ ++ P G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 438 QMGLVSQEPALFATSIKENILFG--KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGE 495
++ SQ + +IKENI+ G ++ VI KA I + ++ + +GE
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVI---KACQLEEDISKFAEKDNIVLGE 156
Query: 496 RGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESER-VVQEALDKAVVGRTTIII 554
G+ +SGG + LLD LD +E+ + + + K + +T I++
Sbjct: 157 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 555 AHRLSTIRNADVIAVVQDGQVMETGSHDEL 584
++ ++ AD I ++ +G G+ EL
Sbjct: 217 TSKMEHLKKADKILILHEGSSYFYGTFSEL 246
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 999 TGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK 1058
G+ L +F+ P + + + KIE G+ A+ G +G+GK++++ +I +P +
Sbjct: 36 NGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 92
Query: 1059 GDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGAS-DEIDESEIVEAAK 1116
G +K R I+ SQ + GTI+ENI G S DE +++A +
Sbjct: 93 GKIKHSGR-------------ISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQ 138
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 92/209 (44%), Gaps = 18/209 (8%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ KD I G+ +A+ G +G+GK++++ ++ P G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 438 QMGLVSQEPALFATSIKENIL-FGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496
++ SQ + +IKENI+ ++ VI KA I + ++ + +GE
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVI---KACQLEEDISKFAEKDNIVLGEG 156
Query: 497 GVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESER-VVQEALDKAVVGRTTIIIA 555
G+ +SGG + LLD LD +E+ + + + K + +T I++
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 556 HRLSTIRNADVIAVVQDGQVMETGSHDEL 584
++ ++ AD I ++ +G G+ EL
Sbjct: 217 SKMEHLKKADKILILHEGSSYFYGTFSEL 245
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 999 TGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK 1058
G+ L +F+ P + + + KIE G+ A+ G +G+GK++++ +I +P +
Sbjct: 36 NGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 92
Query: 1059 GDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAK 1116
G +K R I+ SQ + GTI+ENI + DE +++A +
Sbjct: 93 GKIKHSGR-------------ISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQ 137
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 92/209 (44%), Gaps = 18/209 (8%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ KD I G+ +A+ G +G+GK++++ ++ P G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 438 QMGLVSQEPALFATSIKENIL-FGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496
++ SQ + +IKENI+ ++ VI KA I + ++ + +GE
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVI---KACQLEEDISKFAEKDNIVLGEG 156
Query: 497 GVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESER-VVQEALDKAVVGRTTIIIA 555
G+ +SGG + LLD LD +E+ + + + K + +T I++
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 556 HRLSTIRNADVIAVVQDGQVMETGSHDEL 584
++ ++ AD I ++ +G G+ EL
Sbjct: 217 SKMEHLKKADKILILHEGSSYFYGTFSEL 245
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078
+ + + KIE G+ A+ G +G+GK++++ +I +P +G +K R
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 1079 HIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAK 1116
I+ SQ + GTI+ENI + DE +++A +
Sbjct: 101 -ISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQ 137
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 102/225 (45%), Gaps = 12/225 (5%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
E ++ L I G+ + + G +GSGKST++ ++ P G+++ DG ++ +
Sbjct: 19 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG---ERKKGYE 75
Query: 435 LRSQMGLVSQEPA--LFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492
+R +G+ Q P FA + + + F ++ + A F+ +D+
Sbjct: 76 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVKKAMEFV---GLDFDSF 131
Query: 493 VGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDK-AVVGRTT 551
+SGG P IL+LDE LD E + + ++K +G+T
Sbjct: 132 KDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTV 191
Query: 552 IIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQA-ESGLYTS 594
I+I+H + T+ N D + V++ G+ + G+ E ++ + +TS
Sbjct: 192 ILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTS 236
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 1002 IELQNV-HFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKG 1059
IE+ NV H + P + E S+ I G+ + G +GSGKST++ ++ +P G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1060 DVKIDDRDIRSYHLRSLRRHIALVSQEP--TLFAGTIRENIAYGASDEIDESEIVEAAKA 1117
DV D + Y +RR+I + Q P FA + + +A+ + + + V K
Sbjct: 63 DVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKK 119
Query: 1118 A 1118
A
Sbjct: 120 A 120
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 98/216 (45%), Gaps = 11/216 (5%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
E ++ L I G+ + + G +GSGKST++ ++ P G+++ DG ++ +
Sbjct: 21 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG---ERKKGYE 77
Query: 435 LRSQMGLVSQEPA--LFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492
+R +G+ Q P FA + + + F ++ + A F+ +D+
Sbjct: 78 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVKKAMEFV---GLDFDSF 133
Query: 493 VGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDK-AVVGRTT 551
+SGG P IL+LDE LD E + + ++K +G+T
Sbjct: 134 KDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTV 193
Query: 552 IIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586
I+I+H + T+ N D + V++ G+ + G+ E ++
Sbjct: 194 ILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 229
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 1000 GNIELQNV-HFAYPARP-DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPL 1057
G IE+ NV H + P + E S+ I G+ + G +GSGKST++ ++ +P
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 1058 KGDVKIDDRDIRSYHLRSLRRHIALVSQEP--TLFAGTIRENIAYGASDEIDESEIVEAA 1115
GDV D + Y +RR+I + Q P FA + + +A+ + + + V
Sbjct: 63 SGDVLYDGERKKGYE---IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLV 119
Query: 1116 KAA 1118
K A
Sbjct: 120 KKA 122
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 92/209 (44%), Gaps = 18/209 (8%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ KD I G+ +A+ G +G+GK++++ ++ P G+I G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 438 QMGLVSQEPALFATSIKENIL-FGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496
++ SQ + +IKENI+ ++ VI KA I + ++ + +GE
Sbjct: 70 RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVI---KACQLEEDISKFAEKDNIVLGEG 126
Query: 497 GVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESER-VVQEALDKAVVGRTTIIIA 555
G+ +SGG + LLD LD +E+ + + + K + +T I++
Sbjct: 127 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 186
Query: 556 HRLSTIRNADVIAVVQDGQVMETGSHDEL 584
++ ++ AD I ++ +G G+ EL
Sbjct: 187 SKMEHLKKADKILILHEGSSYFYGTFSEL 215
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 14/118 (11%)
Query: 999 TGNIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLK 1058
T + ++NV A+ + + + KIE G+ A+ G +G+GK++++ +I +P +
Sbjct: 4 TTEVVMENVT-AFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1059 GDVKIDDRDIRSYHLRSLRRHIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAK 1116
G +K R I+ SQ + GTI+ENI + DE +++A +
Sbjct: 63 GKIKHSGR-------------ISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQ 107
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 26/222 (11%)
Query: 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG---VSIDKLQLK 433
+ + + I G+ ++G SG+GK+T + ++ P GE+ D S KL +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 434 WLRSQMGLVSQEPALFAT-SIKENILFGKEDASM------EEVIEAAKASNAHNFIRQLP 486
++G+V Q AL+ + ENI F + M + V E AK + H+ + P
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 487 QQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAV 546
+ ++SGG P +LLLDE S LD+ R AL K V
Sbjct: 139 R-----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARM-RDSARALVKEV 186
Query: 547 ---VGRTTIIIAHRLSTI-RNADVIAVVQDGQVMETGSHDEL 584
+G T ++++H + I AD + V+ G++++ G ++L
Sbjct: 187 QSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 1017 VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH---L 1073
V+ + +I IE G+ ++G SG+GK+T + +I P G++ DDR + S +
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 1074 RSLRRHIALVSQEPTLFAG-TIRENIAY-----GASDEIDESEIVEAAKAANAH 1121
R I +V Q L+ T ENIA+ S E + E AK + H
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH 131
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 53.9 bits (128), Expect = 6e-07, Method: Composition-based stats.
Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 8/181 (4%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSID---KLQLKW 434
I K L++ G+ V+++G SGSGKST++ +L AP G++ L+G +D + +L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 435 LRS-QMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493
LR+ ++G V Q F I E M ++ + K + ++
Sbjct: 79 LRNRKLGFVFQ----FHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL 134
Query: 494 GERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTII 553
+ ++SGG P +L DE T LDS + + V + K G T+I+
Sbjct: 135 SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIV 194
Query: 554 I 554
+
Sbjct: 195 M 195
Score = 37.0 bits (84), Expect = 0.060, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 33/50 (66%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI 1068
I +G S+ ++ G+ +++G SGSGKST++ ++ P +G V ++ +++
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV 68
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 91/209 (43%), Gaps = 18/209 (8%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
+ KD I G+ +A+ G +G+GK++++ ++ P G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 438 QMGLVSQEPALFATSIKENIL-FGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496
++ SQ + +IKENI+ ++ VI KA I + ++ + +GE
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVI---KACQLEEDISKFAEKDNIVLGEG 156
Query: 497 GVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESER-VVQEALDKAVVGRTTIIIA 555
G+ +S G + LLD LD +E+ + + + K + +T I++
Sbjct: 157 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 556 HRLSTIRNADVIAVVQDGQVMETGSHDEL 584
++ ++ AD I ++ +G G+ EL
Sbjct: 217 SKMEHLKKADKILILHEGSSYFYGTFSEL 245
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRR 1078
+ + + KIE G+ A+ G +G+GK++++ +I +P +G +K R
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 1079 HIALVSQEPTLFAGTIRENIAYGASDEIDESEIVEAAK 1116
I+ SQ + GTI+ENI + DE +++A +
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQ 137
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 15/216 (6%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
E ++ KD L I G+ V VG SG GKST++ ++ G++ + ++
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND--TPP 72
Query: 435 LRSQMGLVSQEPALFA-TSIKENILFG-KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492
+G+V Q AL+ S+ EN+ FG K + +EVI + N + QL D
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN--QRVNQVAEVLQLAHLLD-- 128
Query: 493 VGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSE---SERVVQEALDKAVVGR 549
+ +SGG P + LLDE S LD+ R+ L K +GR
Sbjct: 129 --RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR-LGR 185
Query: 550 TTIIIAH-RLSTIRNADVIAVVQDGQVMETGSHDEL 584
T I + H ++ + AD I V+ G+V + G EL
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
+++LQNV A+ +V++ + ++ I G+ VG SG GKST++ +I GD
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 1061 VKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
+ I ++ R R + +V Q L+ ++ EN+++G
Sbjct: 60 LFIGEK--RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG 99
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 15/216 (6%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
E ++ KD L I G+ V VG SG GKST++ ++ G++ + ++
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND--TPP 72
Query: 435 LRSQMGLVSQEPALFA-TSIKENILFG-KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492
+G+V Q AL+ S+ EN+ FG K + +EVI + N + QL D
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN--QRVNQVAEVLQLAHLLD-- 128
Query: 493 VGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSE---SERVVQEALDKAVVGR 549
+ +SGG P + LLDE S LD+ R+ L K +GR
Sbjct: 129 --RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR-LGR 185
Query: 550 TTIIIAH-RLSTIRNADVIAVVQDGQVMETGSHDEL 584
T I + H ++ + AD I V+ G+V + G EL
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
+++LQNV A+ +V++ + ++ I G+ VG SG GKST++ +I GD
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 1061 VKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
+ I ++ R R + +V Q L+ ++ EN+++G
Sbjct: 60 LFIGEK--RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG 99
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 26/222 (11%)
Query: 377 IIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDG---VSIDKLQLK 433
+ + + I G+ ++G SG+GK+T + ++ P GE+ D S KL +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 434 WLRSQMGLVSQEPALFAT-SIKENILFGKEDASM------EEVIEAAKASNAHNFIRQLP 486
++G+V Q AL+ + ENI F + M + V E AK + H+ + P
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 487 QQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAV 546
+ ++SG P +LLLDE S LD+ R AL K V
Sbjct: 139 R-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM-RDSARALVKEV 186
Query: 547 ---VGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
+G T ++++H + I AD + V+ G++++ G ++L
Sbjct: 187 QSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 1017 VMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYH---L 1073
V+ + +I IE G+ ++G SG+GK+T + +I P G++ DDR + S +
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 1074 RSLRRHIALVSQEPTLFAG-TIRENIAY-----GASDEIDESEIVEAAKAANAH 1121
R I +V Q L+ T ENIA+ S E + E AK + H
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH 131
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 96/216 (44%), Gaps = 15/216 (6%)
Query: 375 ESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKW 434
E ++ KD L I G+ V VG SG GKST++ ++ G++ + ++
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND--TPP 72
Query: 435 LRSQMGLVSQEPALFA-TSIKENILFG-KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492
+G+V Q AL+ S+ EN+ FG K + +EVI + N + QL D
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN--QRVNQVAEVLQLAHLLD-- 128
Query: 493 VGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSE---SERVVQEALDKAVVGR 549
+ +SGG P + LLD+ S LD+ R+ L K +GR
Sbjct: 129 --RKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKR-LGR 185
Query: 550 TTIIIAH-RLSTIRNADVIAVVQDGQVMETGSHDEL 584
T I + H ++ + AD I V+ G+V + G EL
Sbjct: 186 TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 1001 NIELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGD 1060
+++LQNV A+ +V++ + ++ I G+ VG SG GKST++ +I GD
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 1061 VKIDDRDIRSYHLRSLRRHIALVSQEPTLFAG-TIRENIAYG 1101
+ I ++ R R + +V Q L+ ++ EN+++G
Sbjct: 60 LFIGEK--RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG 99
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 25/212 (11%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
LTI G+ + L+G SG GK+T + ++ P G I + L K + +V
Sbjct: 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVF 89
Query: 444 QEPALFA-TSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496
Q A++ ++ ENI F +D + V AA+ + + P
Sbjct: 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP---------- 139
Query: 497 GVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGR---TTII 553
Q+SGG P +LL+DE S LD++ RV A K + + TTI
Sbjct: 140 -AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL-RVAMRAEIKKLQQKLKVTTIY 197
Query: 554 IAH-RLSTIRNADVIAVVQDGQVMETGSHDEL 584
+ H ++ + D IAV+ GQ+++ GS E+
Sbjct: 198 VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 1023 FSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIAL 1082
++ I+ G+ L+G SG GK+T + +I +P +G + DRD+ +L R+I++
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV--TYLPPKDRNISM 87
Query: 1083 VSQEPTLFAG-TIRENIAYG------ASDEIDE 1108
V Q ++ T+ ENIA+ DEID+
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK 120
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 25/212 (11%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
LTI G+ + L+G SG GK+T + ++ P G I + L K + +V
Sbjct: 33 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVF 90
Query: 444 QEPALFA-TSIKENILFG------KEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGER 496
Q A++ ++ ENI F +D + V AA+ + + P
Sbjct: 91 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP---------- 140
Query: 497 GVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGR---TTII 553
Q+SGG P +LL+DE S LD++ RV A K + + TTI
Sbjct: 141 -AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL-RVAMRAEIKKLQQKLKVTTIY 198
Query: 554 IAH-RLSTIRNADVIAVVQDGQVMETGSHDEL 584
+ H ++ + D IAV+ GQ+++ GS E+
Sbjct: 199 VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 230
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 1023 FSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIAL 1082
++ I+ G+ L+G SG GK+T + +I +P +G + DRD+ +L R+I++
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV--TYLPPKDRNISM 88
Query: 1083 VSQEPTLFAG-TIRENIAYG------ASDEIDE 1108
V Q ++ T+ ENIA+ DEID+
Sbjct: 89 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK 121
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 28/223 (12%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
+++ G ++G +GSGKST+I ++ F G + + I + L G+V
Sbjct: 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIVR 86
Query: 444 --QEP-ALFATSIKENILFG---------------KEDASMEEVIEAAKASNAHNFIRQL 485
Q P L ++ EN+L G K EE++E KA F++ L
Sbjct: 87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE--KAFKILEFLK-L 143
Query: 486 PQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSAL-DSESERVVQEALDK 544
YD + GE +SGG P+++++DE + + + + L+
Sbjct: 144 SHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 545 AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586
G T +II HRL + N D + V+ +GQ++ G +E I+
Sbjct: 200 KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 1020 FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079
+G SI + G T ++G +GSGKST+I +I F +G V +++DI + L +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 1080 -IALVSQEPT-LFAGTIRENIAYG 1101
I Q P L T+ EN+ G
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIG 106
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 28/223 (12%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
+++ G ++G +GSGKST+I ++ F G + + I + L G+V
Sbjct: 28 ISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIVR 86
Query: 444 --QEP-ALFATSIKENILFGKED---------------ASMEEVIEAAKASNAHNFIRQL 485
Q P L ++ EN+L G+ + EE++E KA F++ L
Sbjct: 87 TFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVE--KAFKILEFLK-L 143
Query: 486 PQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSAL-DSESERVVQEALDK 544
YD + GE +SGG P+++++DE + + + + L+
Sbjct: 144 SHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 545 AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586
G T +II HRL + N D + V+ +GQ++ G +E I+
Sbjct: 200 KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 1020 FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079
+G SI + G T ++G +GSGKST+I +I F +G V +++DI + L +
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 1080 -IALVSQEPT-LFAGTIRENIAYGASDEIDESE 1110
I Q P L T+ EN+ G EI+ E
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIG---EINPGE 112
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 108/233 (46%), Gaps = 39/233 (16%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSI---------- 427
+ K L AG ++++G SGSGKST + + P G II++G +I
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 428 ---DKLQLKWLRSQMGLVSQEPALFA-TSIKENILFGKEDASMEEVIEAAKASNAHNFIR 483
DK QL+ LR+++ +V Q L++ ++ EN+ ME I+ S R
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV--------MEAPIQVLGLSKHDARER 132
Query: 484 QLPQQYDTQVG--ERG-----VQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDS---- 532
L +Y +VG ER V +SGG P +LL DE TSALD
Sbjct: 133 AL--KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVG 190
Query: 533 ESERVVQEALDKAVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDEL 584
E R++Q+ ++ G+T +++ H + R+ + + + G++ E G +++
Sbjct: 191 EVLRIMQQLAEE---GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 28/223 (12%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVS 443
+++ G ++G +GSGKST+I ++ F G + + I + L G+V
Sbjct: 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIVR 86
Query: 444 --QEP-ALFATSIKENILFGKED---------------ASMEEVIEAAKASNAHNFIRQL 485
Q P L ++ EN+L G+ + EE++E KA F++ L
Sbjct: 87 TFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVE--KAFKILEFLK-L 143
Query: 486 PQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSAL-DSESERVVQEALDK 544
YD + GE +SGG P+++++D+ + + + + L+
Sbjct: 144 SHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLEL 199
Query: 545 AVVGRTTIIIAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQ 586
G T +II HRL + N D + V+ +GQ++ G +E I+
Sbjct: 200 KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 1020 FEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRH 1079
+G SI + G T ++G +GSGKST+I +I F +G V +++DI + L +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 1080 -IALVSQEPT-LFAGTIRENIAYGASDEIDESE 1110
I Q P L T+ EN+ G EI+ E
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIG---EINPGE 112
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 21/232 (9%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALL--QRFYAPLGGEIILDGVSIDKLQL-KW 434
I K L +P G+ AL+G +G+GKST+ +L Y GEI+LDG +I +L +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 435 LRSQMGLVSQEPALFATSIKENIL-------FGKEDASMEEVIEAAKASNAHNFIRQLPQ 487
R + L Q P N L G+E E + KA ++
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS 137
Query: 488 QYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVV 547
+Y + SGG P +LDE S LD ++ +VV ++ A+
Sbjct: 138 RYLNE------GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVN-AMR 190
Query: 548 GRT--TIIIAH--RLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTSL 595
G ++I H R+ D + V+ DG+V+ TG + ++ E+ Y L
Sbjct: 191 GPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYEWL 242
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 27/220 (12%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI-ILDGVSIDKLQLKWL--- 435
KD L I G+ + L+G SG GK+T + + P G+I I D + D + ++
Sbjct: 23 KDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPK 82
Query: 436 RSQMGLVSQEPALFA-TSIKENILF-------GKEDASMEEVIEAAKASNAHNFIRQLPQ 487
+ V Q AL+ ++ +NI F K++ + V E A+ + + P+
Sbjct: 83 ERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEID-KRVREVAEXLGLTELLNRKPR 141
Query: 488 QYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDK--A 545
++SGG P++ L DE S LD++ + L K
Sbjct: 142 -----------ELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQR 190
Query: 546 VVGRTTIIIAH-RLSTIRNADVIAVVQDGQVMETGSHDEL 584
+G TTI + H ++ D IAV G++ + G+ DE+
Sbjct: 191 QLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI----RSY 1071
DV + S++I+ G+ L+G SG GK+T + I +P +G + I+D + +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 1072 HLRSLRRHIALVSQEPTLFA-GTIRENIAY 1100
+ R +A V Q L+ T+ +NIA+
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAF 107
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 9/209 (4%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWL-RSQMGLV 442
L +P G+ V L+G +G+GK+T ++ + G+II +G I + R + LV
Sbjct: 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALV 86
Query: 443 SQEPALFAT-SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMS 501
+ +F ++ EN+ G + +E I+ +I L + ++ + G +S
Sbjct: 87 PEGRRIFPELTVYENLXXGAYNRKDKEGIK-----RDLEWIFSLFPRLKERLKQLGGTLS 141
Query: 502 GGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHR--LS 559
GG P++L DE + L V E + K TTI++ + L
Sbjct: 142 GGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG 201
Query: 560 TIRNADVIAVVQDGQVMETGSHDELIQAE 588
++ A V++ GQ++ G EL+ E
Sbjct: 202 ALKVAHYGYVLETGQIVLEGKASELLDNE 230
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E+Q++H Y A + +G +K+ G+ L+G +G+GK+T + I KG +
Sbjct: 7 LEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1062 KIDDRDIRSYHLRSLRRH-IALVSQEPTLFAG-TIRENIAYGASDEIDESEI 1111
+ +DI + + R IALV + +F T+ EN+ GA + D+ I
Sbjct: 64 IFNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGI 115
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 23/228 (10%)
Query: 384 LTIPAGKTVALVGGSGSGKSTVIALLQRFYAP----LGGEIILDGVSIDKLQLKWLRS-- 437
L I A+VG S SGKST+I + + P L G ++ G + ++ + LR
Sbjct: 29 LDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIR 88
Query: 438 --QMGLVSQ--EPALFAT-----SIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQ 488
++ LV Q + +L T K+ + S E+IE KAS +R P+
Sbjct: 89 WKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIE--KASEKLRMVRLNPEA 146
Query: 489 YDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESE-RVVQEALDKAVV 547
+ +Q+SGG P +L+LDE TSALD ++ ++Q + +
Sbjct: 147 V---LNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKM 203
Query: 548 GRTTII-IAHRLSTIRN-ADVIAVVQDGQVMETGSHDELIQAESGLYT 593
+ T+I + H ++ AD +AV+ G ++E S ++ + YT
Sbjct: 204 LKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYT 251
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 1021 EGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDP----LKGDVKIDDRDI---RSYHL 1073
+G S+ I TA+VG+S SGKSTII + + P L G V +D+ R L
Sbjct: 25 DGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEEL 84
Query: 1074 RSLR-RHIALVSQ 1085
R +R + IALV Q
Sbjct: 85 RKIRWKEIALVPQ 97
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 19/215 (8%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRS 437
I K I G+ L+G +G+GK+T + ++ P G + + G ++ + + +R
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 438 QMGLVSQEPALFATSIKENIL------FGKEDASMEEVIEAAKASNAHNFIRQLPQQYDT 491
+ + +E + L + + +EE++E A I L ++
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE------IAGLGEKIKD 142
Query: 492 QVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVV-GRT 550
+V S G PR+ +LDE TS LD + R V++ L +A G T
Sbjct: 143 RVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 551 TIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDEL 584
++ +H + + D IA++ +G ++ETG+ +EL
Sbjct: 199 ILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 1019 IFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI--RSYHLRSL 1076
I +G S +IE G+ L+G +G+GK+T + +I P G V + +++ + +R L
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 102/229 (44%), Gaps = 25/229 (10%)
Query: 380 KDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI-ILDGVSIDKLQLKWLRSQ 438
++ L + G+ + L+G SG GK+T + ++ P G+I I D + D + ++ +
Sbjct: 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79
Query: 439 ---MGLVSQEPALFA-TSIKENILFGKEDASM------EEVIEAAKASNAHNFIRQLPQQ 488
+ +V Q AL+ ++ +NI F + + + V E A+ + + P+
Sbjct: 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR- 138
Query: 489 YDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDK--AV 546
++SGG P++ L+DE S LD++ ++ L K
Sbjct: 139 ----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ 188
Query: 547 VGRTTIIIAH-RLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYTS 594
+G TTI + H ++ + D IAV+ G + + GS DE+ + + +
Sbjct: 189 LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVA 237
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 1024 SIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDI----RSYHLRSLRRH 1079
S++++ G+ L+G SG GK+T + +I +P +G + I D+ + + + R
Sbjct: 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82
Query: 1080 IALVSQEPTLFAG-TIRENIAY 1100
IA+V Q L+ T+ +NIA+
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAF 104
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/184 (21%), Positives = 79/184 (42%), Gaps = 41/184 (22%)
Query: 373 RPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQL 432
+ E+ +F+ + G +A++G +G GKST++ LL + P+ G+I
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI------------ 62
Query: 433 KWLRSQMGLVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492
+ +G V P F++ ++L +++ ++++ + F + P+ +D Q
Sbjct: 63 -EVYQSIGFV---PQFFSSPFAYSVL---------DIVLMGRSTHINTFAK--PKSHDYQ 107
Query: 493 VGERGV--------------QMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVV 538
V + + +SGG +++LLDE TSALD ++ +V
Sbjct: 108 VAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIV 167
Query: 539 QEAL 542
L
Sbjct: 168 LSLL 171
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+ ++N+ F Y A + +F+ + + G A++GQ+G GKST++ L+ + P++G +
Sbjct: 5 LSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 1062 KI 1063
++
Sbjct: 63 EV 64
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 22/185 (11%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLK--WL 435
+ + +TI G V G +G GK+T++ + + PL GEII +GV I K++ K +L
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFL 83
Query: 436 RSQMGL---VSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQ 492
++ + +S E L A + L+G + + E+++A ++ + ++L
Sbjct: 84 PEEIIVPRKISVEDYLKAVAS----LYGVK-VNKNEIMDALESVEVLDLKKKL------- 131
Query: 493 VGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTI 552
GE +S G I +LD+ A+D +S+ V +++ + + + +
Sbjct: 132 -GE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 553 IIAHR 557
II+ R
Sbjct: 187 IISSR 191
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+E++++ Y D + E ++ IE G G +G GK+T++ I + PLKG++
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 49/214 (22%), Positives = 94/214 (43%), Gaps = 29/214 (13%)
Query: 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQE 445
+ AG+ + LVG +G+GKST++A + + G I G ++ L +SQ+
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 446 PA-LFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG- 503
FAT + + + D + E++ + A D ++G Q+SGG
Sbjct: 82 QTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTNQLSGGE 131
Query: 504 ------XXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVV-----GRTTI 552
++LLLD+ ++LD Q ALDK + G +
Sbjct: 132 WQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSALDKILSALSQQGLAIV 187
Query: 553 IIAHRLS-TIRNADVIAVVQDGQVMETGSHDELI 585
+ +H L+ T+R+A +++ G+++ +G +E++
Sbjct: 188 MSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 1023 FSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIAL 1082
S ++ AG+ LVG +G+GKST++ + KG ++ + + ++ L H A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALHRAY 77
Query: 1083 VSQEPT 1088
+SQ+ T
Sbjct: 78 LSQQQT 83
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 29/214 (13%)
Query: 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQE 445
+ AG+ + LVG +G+GKST++A + + G I G ++ L +SQ+
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 446 PA-LFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG- 503
FAT + + + D + E++ + A D ++G Q+SGG
Sbjct: 82 QTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTNQLSGGE 131
Query: 504 ------XXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVV-----GRTTI 552
++LLLD+ +LD Q ALDK + G +
Sbjct: 132 WQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSALDKILSALSQQGLAIV 187
Query: 553 IIAHRLS-TIRNADVIAVVQDGQVMETGSHDELI 585
+ +H L+ T+R+A +++ G+++ +G +E++
Sbjct: 188 MSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 1023 FSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDDRDIRSYHLRSLRRHIAL 1082
S ++ AG+ LVG +G+GKST++ + KG ++ + + ++ L H A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALHRAY 77
Query: 1083 VSQEPT 1088
+SQ+ T
Sbjct: 78 LSQQQT 83
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 50/214 (23%), Positives = 91/214 (42%), Gaps = 29/214 (13%)
Query: 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQE 445
+ AG+ + LVG +G+GKST++A + G I G ++ L +SQ+
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARXAGXTSG-KGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 446 PA-LFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG- 503
FAT + + + D + E++ + A D ++G Q+SGG
Sbjct: 82 QTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTNQLSGGE 131
Query: 504 ------XXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVV-----GRTTI 552
++LLLDE ++LD Q ALDK + G +
Sbjct: 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALCQQGLAIV 187
Query: 553 IIAHRLS-TIRNADVIAVVQDGQVMETGSHDELI 585
+H L+ T+R+A +++ G+ + +G +E++
Sbjct: 188 XSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 50/214 (23%), Positives = 91/214 (42%), Gaps = 29/214 (13%)
Query: 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQE 445
+ AG+ + LVG +G+GKST++A + G I G ++ L +SQ+
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARXAGXTSG-KGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 446 PA-LFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQVGERGVQMSGG- 503
FAT + + + D + E++ + A D ++G Q+SGG
Sbjct: 82 QTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTNQLSGGE 131
Query: 504 ------XXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVV-----GRTTI 552
++LLLDE ++LD Q ALDK + G +
Sbjct: 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALSQQGLAIV 187
Query: 553 IIAHRLS-TIRNADVIAVVQDGQVMETGSHDELI 585
+H L+ T+R+A +++ G+ + +G +E++
Sbjct: 188 XSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 102/246 (41%), Gaps = 37/246 (15%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALL--QRFYAPLGGEIILDGVSIDKL----- 430
I + L + G+ A++G +GSGKST+ A L + Y GG + G + L
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 431 -------------QLKWLRSQMGLVSQEPALFATSIKENI-LFGKEDASMEEVIEAAKAS 476
++ + +Q L + A+ + +E + F +D MEE I K
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDL-MEEKIALLK-- 132
Query: 477 NAHNFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESER 536
+P+ T+ V SGG P + +LDE+ S LD ++ +
Sbjct: 133 --------MPEDLLTR--SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALK 182
Query: 537 VVQEALDKAVVG-RTTIIIAH--RLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYT 593
VV + ++ G R+ II+ H R+ D + V+ G+++++G + Q E Y
Sbjct: 183 VVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYG 242
Query: 594 SLVRLQ 599
L Q
Sbjct: 243 WLTEQQ 248
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTI 1046
D I G S+ + G+ A++G +GSGKST+
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTL 43
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 102/246 (41%), Gaps = 37/246 (15%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALL--QRFYAPLGGEIILDGVSIDKL----- 430
I + L + G+ A++G +GSGKST+ A L + Y GG + G + L
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 431 -------------QLKWLRSQMGLVSQEPALFATSIKENI-LFGKEDASMEEVIEAAKAS 476
++ + +Q L + A+ + +E + F +D MEE I K
Sbjct: 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDL-MEEKIALLK-- 151
Query: 477 NAHNFIRQLPQQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESER 536
+P+ T+ V SGG P + +LDE+ S LD ++ +
Sbjct: 152 --------MPEDLLTR--SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALK 201
Query: 537 VVQEALDKAVVG-RTTIIIAH--RLSTIRNADVIAVVQDGQVMETGSHDELIQAESGLYT 593
VV + ++ G R+ II+ H R+ D + V+ G+++++G + Q E Y
Sbjct: 202 VVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYG 261
Query: 594 SLVRLQ 599
L Q
Sbjct: 262 WLTEQQ 267
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 1016 DVMIFEGFSIKIEAGKSTALVGQSGSGKSTI 1046
D I G S+ + G+ A++G +GSGKST+
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTL 62
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 520 ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVV------QD 572
+ +LDE T L E R + E L + V G T I+I H L I+NAD I + +
Sbjct: 829 LYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEG 888
Query: 573 GQVMETGSHDEL 584
G ++ TG+ +E+
Sbjct: 889 GYIVATGTPEEI 900
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 520 ILLLDEATSALDS-ESERVVQEALDKAVVGRTTIIIAHRLSTIRNADVIAVV------QD 572
I +LDE T L ++ER+++ +G T I++ H IRNAD I +
Sbjct: 487 IYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDIGPGGGTNG 546
Query: 573 GQVMETGSHDELIQ 586
G+V+ G+ DEL++
Sbjct: 547 GRVVFQGTVDELLK 560
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 35/175 (20%), Positives = 75/175 (42%), Gaps = 18/175 (10%)
Query: 389 GKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMGLVSQEPAL 448
G+ V ++G +GSGK+T++ + P G I ++G+ + K++ ++R
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIR-NYIR------------ 75
Query: 449 FATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQ-QYDTQVGERGV-QMSGGXXX 506
++T++ E G + + E K + F+ L + ++ R + ++S G
Sbjct: 76 YSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSV 135
Query: 507 XXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLSTI 561
P I+ LDE +D+ V+ + + G+ I++ H L +
Sbjct: 136 LVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE--YGKEGILVTHELDML 188
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 520 ILLLDEATSALDSESERVVQEALDKAV-VGRTTIIIAHRLSTIRNADVIAVV------QD 572
+ +LDE + L R + E L + +G T I++ H TI +AD I +
Sbjct: 544 LYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHG 603
Query: 573 GQVMETGSHDELIQAE---SGLYTS 594
G+++ +G +DEL++ + +G Y S
Sbjct: 604 GRIVHSGPYDELLRNKDSITGAYLS 628
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 361 VEFKCVQFAYP--SRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGG 418
V+ ++F YP S+P+ D +A++G +G+GKST+I +L P G
Sbjct: 672 VKVTNMEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Query: 419 EI 420
E+
Sbjct: 729 EV 730
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 500 MSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLS 559
+SGG P +++LDE T+ LD +S + +AL + G III H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 560 TIRN-ADVIAVVQDGQVMETGSH 581
+N + + V+DG++ +G +
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSGHN 982
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+++ N+ F YP I + + + A++G +G+GKST+I ++ P G+V
Sbjct: 672 VKVTNMEFQYPGTSKPQITD-INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2OAP|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAP|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAQ|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
pdb|2OAQ|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
Length = 511
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 1025 IKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDVKIDD-RDIRSYH 1072
+ IE S +VG++ SGK+T + I F P V I+D R+I+ YH
Sbjct: 255 LAIEHKFSAIVVGETASGKTTTLNAIXXFIPPDAKVVSIEDTREIKLYH 303
>pdb|3FG6|A Chain A, Structure Of The C-terminus Of Adseverin
pdb|3FG6|C Chain C, Structure Of The C-terminus Of Adseverin
pdb|3FG6|G Chain G, Structure Of The C-terminus Of Adseverin
pdb|3FG6|E Chain E, Structure Of The C-terminus Of Adseverin
pdb|3FG6|F Chain F, Structure Of The C-terminus Of Adseverin
pdb|3FG6|H Chain H, Structure Of The C-terminus Of Adseverin
pdb|3FG6|D Chain D, Structure Of The C-terminus Of Adseverin
pdb|3FG6|B Chain B, Structure Of The C-terminus Of Adseverin
Length = 371
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 45 GDGFSTPLVLFLTSKFMNNIGGVSNVPIDVFTHNINKNTVHLLYLALGSWVACFLEGYCW 104
G + P LF + + +I + V +DV +++N N V +L L S GY W
Sbjct: 159 GQAPAPPTRLFQVRRNLASITRI--VEVDVDANSLNSNDVFVLKLPQNS-------GYIW 209
Query: 105 TRTGERQATRMRARYLKAVLR 125
G Q A Y+ +VL+
Sbjct: 210 VGKGASQEEEKGAEYVASVLK 230
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 654 EEDIKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQPIYAFAMGSMISVYFLTDHD 713
E+ +KKL +F + + A E + TLG +G G+ Y A G + Y + +
Sbjct: 120 EDRVKKL---NFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKRE 176
Query: 714 EIKKKTSIY 722
++K+K +Y
Sbjct: 177 DLKEKGCVY 185
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 367 QFAYP--SRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+F YP S+P+ D +A++G +G+GKST+I +L P GE+
Sbjct: 672 EFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 500 MSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLS 559
+SGG P +++LDE T+ LD +S + +AL + G III H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 560 TIRN-ADVIAVVQDGQVMETGSH 581
+N + + V+DG+ +G +
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSGHN 976
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+++ N F YP I + + + A++G +G+GKST+I ++ P G+V
Sbjct: 666 VKVTNXEFQYPGTSKPQITD-INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 367 QFAYP--SRPESIIFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEI 420
+F YP S+P+ D +A++G +G+GKST+I +L P GE+
Sbjct: 678 EFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 500 MSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDKAVVGRTTIIIAHRLS 559
+SGG P +++LDE T+ LD +S + +AL + G III H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 560 TIRN-ADVIAVVQDGQVMETGSH 581
+N + + V+DG+ +G +
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSGHN 982
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 1002 IELQNVHFAYPARPDVMIFEGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGDV 1061
+++ N F YP I + + + A++G +G+GKST+I ++ P G+V
Sbjct: 672 VKVTNXEFQYPGTSKPQITD-INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
Query: 1046 IIGLIERFYDPLKG-------DVK----IDDRDIRSYHLRSLRRHIALVSQEPTLFAG 1092
++GLI+ PLKG D K +DD+D+++ + + + H + EP LF G
Sbjct: 1031 MMGLIKNHNGPLKGKPYSGWVDAKTGEPVDDKDVKAKYEKYILEHSGIRLIEPELFGG 1088
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 22/227 (9%)
Query: 378 IFKDFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKL--QLKWL 435
I K I G L G +G+GK+T++ +L + G + L G K+ + +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 436 RSQMGLVSQ---EPALFATSIKENILFGK-EDASMEEVIEAAKASNAHNFIRQL-----P 486
R +G VS E + + ++ G + + + I+ + AH ++ +
Sbjct: 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKA 155
Query: 487 QQYDTQVGERGVQMSGGXXXXXXXXXXXXXXPRILLLDEATSALD---SESERVVQEALD 543
QQY +G +S G P++L+LDE + LD ES + ++L
Sbjct: 156 QQY---IG----YLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLS 208
Query: 544 KAVVGRTTIIIAHRLSTIR-NADVIAVVQDGQVMETGSHDELIQAES 589
+ I + H + I N I +++DGQ ++ G+ ++++ +E+
Sbjct: 209 DSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSEN 255
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVI------ALLQRFY 413
K+ + IP G VA+ G SGSGKST++ AL Q+ +
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLH 378
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVI------ALLQRFY 413
K+ + IP G VA+ G SGSGKST++ AL Q+ +
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLH 680
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 379 FKDFCLTIPAGKTVALVGGSGSGKSTVI------ALLQRFY 413
K+ + IP G VA+ G SGSGKST++ AL Q+ +
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLH 680
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 33/203 (16%)
Query: 386 IPAGKTVALVGGSGSGKSTVIALLQRFYAP--LGGEIILDGV----SIDKLQLKWLRSQM 439
+ G V +VG +G+GKST + +L P G DGV ++LQ + + +
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 440 GLV-----SQEPALFATSIKENI--LFGKEDAS--MEEVIEAAKASNAHNFIRQLPQQYD 490
G + Q L ++K + L K D + +EEV++A + N
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELEN------------- 150
Query: 491 TQVGERGVQ-MSGGXXXXXXXXXXXXXXPRILLLDEATSALDSESERVVQEALDK-AVVG 548
V ER +Q +SGG DE +S LD A+ + + G
Sbjct: 151 --VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG 208
Query: 549 RTTIIIAHRLSTIRN-ADVIAVV 570
++ +++ H L+ + +D+I VV
Sbjct: 209 KSVLVVEHDLAVLDYLSDIIHVV 231
>pdb|4GP7|A Chain A, Polynucleotide Kinase
pdb|4GP7|B Chain B, Polynucleotide Kinase
Length = 171
Score = 30.4 bits (67), Expect = 6.7, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 384 LTIPAGKTVALVGGSGSGKST 404
LTIP V L+G SGSGKST
Sbjct: 4 LTIPELSLVVLIGSSGSGKST 24
>pdb|4GP6|A Chain A, Polynucleotide Kinase
pdb|4GP6|B Chain B, Polynucleotide Kinase
Length = 171
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 384 LTIPAGKTVALVGGSGSGKST 404
LTIP V L+G SGSGKST
Sbjct: 4 LTIPELSLVVLIGSSGSGKST 24
>pdb|1SLQ|A Chain A, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
pdb|1SLQ|B Chain B, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
pdb|1SLQ|C Chain C, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
pdb|1SLQ|D Chain D, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
pdb|1SLQ|E Chain E, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
pdb|1SLQ|F Chain F, Crystal Structure Of The Trimeric State Of The Rhesus
Rotavirus Vp4 Membrane Interaction Domain, Vp5ct
Length = 278
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 14/113 (12%)
Query: 381 DFCLTIPAGKTVALVGGSGSGKSTVIALLQRFYAPLGGEIILDGVSIDKLQLKWLRSQMG 440
D+ +P G+ + GG+ S S + L +F D + L LR +
Sbjct: 137 DYSFALPVGQWPVMTGGAVSLHSAGVTLSTQF--------------TDFVSLNSLRFRFR 182
Query: 441 LVSQEPALFATSIKENILFGKEDASMEEVIEAAKASNAHNFIRQLPQQYDTQV 493
L +EP+ T + + L+G A+ E + + + I +P D Q
Sbjct: 183 LTVEEPSFSITRTRVSRLYGLPAANPNNGKEYYEVAGRFSLISLVPSNDDYQT 235
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 29.6 bits (65), Expect = 9.4, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 394 LVGGSGSGKSTVIALLQRFYAPLGGEIIL 422
LVG +G+GK+T +A + +YA LG ++++
Sbjct: 110 LVGVNGTGKTTSLAKMANYYAELGYKVLI 138
>pdb|2CR4|A Chain A, Solution Structure Of The Sh2 Domain Of Human Sh3bp2
Protein
Length = 126
Score = 29.6 bits (65), Expect = 9.6, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 23/123 (18%)
Query: 648 GASQSNEEDIKKLPVPSFRRLVALNAPEWKQATLGCVGATLFGAVQP-------IYAFAM 700
G+S S+ ED +K+P+P+ V +N E C LF A P +Y
Sbjct: 1 GSSGSSGEDYEKVPLPNS---VFVNTTE------SCEVERLFKATSPRGEPQDGLYCIRN 51
Query: 701 GSMISVYFLTDHDEIKKKTSIY-------AFCFLGLAVFTLVINIIQHYNFAYMGEHLTK 753
S S L DE K Y F G +F V ++++HY+ + H +
Sbjct: 52 SSTKSGKVLVVWDETSNKVRNYRIFEKDSKFYLEGEVLFVSVGSMVEHYHTHVLPSHQSL 111
Query: 754 RIR 756
+R
Sbjct: 112 LLR 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,354,428
Number of Sequences: 62578
Number of extensions: 1064372
Number of successful extensions: 3041
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2637
Number of HSP's gapped (non-prelim): 270
length of query: 1133
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1024
effective length of database: 8,152,335
effective search space: 8347991040
effective search space used: 8347991040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)